Query 014127
Match_columns 430
No_of_seqs 121 out of 137
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 02:06:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014127.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014127hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09787 Golgin_A5: Golgin sub 100.0 1.9E-26 4.2E-31 241.8 27.8 163 232-398 336-511 (511)
2 KOG4677 Golgi integral membran 99.9 7.8E-25 1.7E-29 224.2 29.3 169 236-410 379-553 (554)
3 PF08172 CASP_C: CASP C termin 99.6 2.3E-14 5E-19 139.6 15.3 130 277-412 95-246 (248)
4 KOG0963 Transcription factor/C 98.7 0.00012 2.7E-09 79.3 33.5 46 358-404 570-615 (629)
5 TIGR02168 SMC_prok_B chromosom 97.7 0.14 3.1E-06 57.7 34.9 14 295-308 921-934 (1179)
6 TIGR02169 SMC_prok_A chromosom 97.7 0.18 3.9E-06 57.3 34.1 30 279-308 431-460 (1164)
7 PF00261 Tropomyosin: Tropomyo 97.6 0.029 6.3E-07 54.3 23.0 173 132-320 35-214 (237)
8 TIGR02168 SMC_prok_B chromosom 97.6 0.21 4.5E-06 56.4 34.1 35 280-314 899-933 (1179)
9 TIGR02169 SMC_prok_A chromosom 97.5 0.32 7E-06 55.3 34.7 37 279-315 452-488 (1164)
10 KOG0161 Myosin class II heavy 97.3 0.23 5E-06 61.0 29.2 196 103-322 837-1032(1930)
11 KOG1029 Endocytic adaptor prot 97.1 0.8 1.7E-05 52.0 30.3 126 188-315 436-589 (1118)
12 KOG0161 Myosin class II heavy 97.1 0.81 1.8E-05 56.5 31.4 169 142-319 1043-1226(1930)
13 KOG1029 Endocytic adaptor prot 96.9 0.65 1.4E-05 52.8 26.2 28 276-303 564-591 (1118)
14 COG1196 Smc Chromosome segrega 96.9 1.5 3.3E-05 51.6 34.9 225 96-320 687-929 (1163)
15 PF10174 Cast: RIM-binding pro 96.9 1.2 2.7E-05 50.6 29.9 133 179-320 228-360 (775)
16 PRK02224 chromosome segregatio 96.7 1.6 3.6E-05 49.1 28.0 51 165-215 255-305 (880)
17 KOG4643 Uncharacterized coiled 96.7 0.15 3.2E-06 58.9 19.4 157 162-320 171-346 (1195)
18 KOG0994 Extracellular matrix g 96.6 1.1 2.3E-05 53.0 26.0 198 103-319 1531-1747(1758)
19 KOG0977 Nuclear envelope prote 96.3 0.12 2.6E-06 56.4 15.8 126 170-295 87-217 (546)
20 KOG1937 Uncharacterized conser 96.3 1.8 3.8E-05 46.7 23.8 172 145-320 246-427 (521)
21 PRK02224 chromosome segregatio 96.0 3.7 8E-05 46.4 29.9 34 149-182 525-558 (880)
22 PRK11637 AmiB activator; Provi 95.8 2.9 6.2E-05 43.8 24.3 28 287-314 224-251 (428)
23 PRK04863 mukB cell division pr 95.6 7.9 0.00017 47.3 31.2 81 241-321 398-481 (1486)
24 COG1196 Smc Chromosome segrega 95.6 6.7 0.00015 46.4 33.7 30 95-124 191-220 (1163)
25 TIGR02680 conserved hypothetic 95.0 11 0.00024 45.5 26.8 39 277-315 923-961 (1353)
26 PF07888 CALCOCO1: Calcium bin 95.0 7.2 0.00016 43.0 24.4 37 236-272 279-315 (546)
27 PF13851 GAS: Growth-arrest sp 94.8 2.7 5.8E-05 40.4 17.2 135 165-306 31-174 (201)
28 KOG0971 Microtubule-associated 94.7 6.5 0.00014 45.8 22.0 149 122-270 258-440 (1243)
29 PRK10929 putative mechanosensi 94.6 13 0.00028 44.3 26.4 37 284-320 267-303 (1109)
30 PRK09039 hypothetical protein; 94.4 6.9 0.00015 40.4 20.2 131 167-309 52-185 (343)
31 TIGR00606 rad50 rad50. This fa 94.4 15 0.00033 44.0 29.8 61 253-313 1027-1092(1311)
32 PF07888 CALCOCO1: Calcium bin 94.2 11 0.00023 41.7 30.5 70 107-177 167-236 (546)
33 PF09726 Macoilin: Transmembra 94.2 9.7 0.00021 43.1 22.2 117 153-269 452-581 (697)
34 KOG0250 DNA repair protein RAD 93.9 5.1 0.00011 47.1 19.6 210 98-316 222-456 (1074)
35 PRK09039 hypothetical protein; 93.9 7.8 0.00017 40.0 19.2 119 97-216 46-164 (343)
36 PF05667 DUF812: Protein of un 93.8 13 0.00029 41.3 26.4 193 125-321 324-530 (594)
37 KOG0996 Structural maintenance 93.6 21 0.00046 42.7 25.0 157 155-311 385-557 (1293)
38 PF10168 Nup88: Nuclear pore c 93.4 14 0.0003 42.0 21.8 164 140-308 543-711 (717)
39 PF14915 CCDC144C: CCDC144C pr 93.4 5 0.00011 41.2 16.4 146 172-323 53-206 (305)
40 PF00038 Filament: Intermediat 93.2 9.6 0.00021 37.7 28.0 105 106-210 20-138 (312)
41 COG1579 Zn-ribbon protein, pos 93.0 3.7 8E-05 40.9 14.6 123 183-305 46-172 (239)
42 KOG0250 DNA repair protein RAD 92.7 26 0.00057 41.5 28.6 44 173-216 279-322 (1074)
43 TIGR01843 type_I_hlyD type I s 92.6 13 0.00028 37.6 18.4 23 297-319 247-269 (423)
44 TIGR00606 rad50 rad50. This fa 92.6 29 0.00063 41.7 31.9 114 99-218 787-910 (1311)
45 KOG4643 Uncharacterized coiled 92.6 27 0.00059 41.3 27.5 62 256-318 525-600 (1195)
46 KOG0612 Rho-associated, coiled 92.0 34 0.00075 41.2 29.3 28 286-313 671-698 (1317)
47 PF10174 Cast: RIM-binding pro 91.8 29 0.00063 40.0 27.3 112 97-209 238-356 (775)
48 KOG0994 Extracellular matrix g 91.1 43 0.00092 40.5 25.6 58 237-294 1693-1750(1758)
49 KOG0996 Structural maintenance 91.1 42 0.0009 40.4 26.3 82 234-315 501-582 (1293)
50 KOG0980 Actin-binding protein 90.7 40 0.00086 39.5 23.4 109 100-216 329-444 (980)
51 PF15070 GOLGA2L5: Putative go 90.3 17 0.00038 40.6 17.8 33 166-198 27-59 (617)
52 PF10212 TTKRSYEDQ: Predicted 90.0 19 0.00041 39.6 17.3 56 251-309 459-514 (518)
53 PF00261 Tropomyosin: Tropomyo 90.0 20 0.00043 34.9 20.6 65 256-320 122-186 (237)
54 PF09726 Macoilin: Transmembra 89.9 40 0.00087 38.4 27.2 68 248-322 588-655 (697)
55 COG1579 Zn-ribbon protein, pos 89.8 23 0.0005 35.4 19.1 105 166-270 22-126 (239)
56 KOG0977 Nuclear envelope prote 88.7 44 0.00095 37.2 27.2 100 106-206 115-214 (546)
57 PF04111 APG6: Autophagy prote 88.3 4.6 0.0001 41.2 10.8 79 239-317 56-134 (314)
58 PF07926 TPR_MLP1_2: TPR/MLP1/ 88.3 18 0.00039 32.2 14.0 37 279-315 95-131 (132)
59 PF09787 Golgin_A5: Golgin sub 88.3 42 0.00091 36.4 25.1 147 124-271 150-312 (511)
60 PF12718 Tropomyosin_1: Tropom 87.9 21 0.00046 32.6 15.8 22 158-179 11-32 (143)
61 PF05667 DUF812: Protein of un 87.7 52 0.0011 36.8 22.2 136 171-315 390-531 (594)
62 PF15619 Lebercilin: Ciliary p 87.7 27 0.00059 33.5 17.2 79 221-301 58-144 (194)
63 COG4942 Membrane-bound metallo 87.6 45 0.00098 35.9 22.3 40 166-205 71-110 (420)
64 KOG0964 Structural maintenance 87.5 38 0.00083 40.1 18.2 50 155-204 665-714 (1200)
65 PRK11281 hypothetical protein; 87.4 74 0.0016 38.3 28.7 37 284-320 287-323 (1113)
66 PF00769 ERM: Ezrin/radixin/mo 87.2 27 0.00058 34.6 15.0 47 165-211 9-55 (246)
67 PRK10884 SH3 domain-containing 87.0 14 0.0003 35.9 12.6 27 159-185 91-117 (206)
68 KOG0971 Microtubule-associated 86.9 73 0.0016 37.7 27.1 43 274-316 503-545 (1243)
69 KOG1003 Actin filament-coating 86.8 33 0.00071 33.6 20.7 47 273-319 135-181 (205)
70 PF15035 Rootletin: Ciliary ro 86.6 14 0.00029 35.3 12.1 105 164-268 5-130 (182)
71 PF07106 TBPIP: Tat binding pr 85.7 17 0.00037 33.3 12.1 64 235-303 74-137 (169)
72 PRK03918 chromosome segregatio 84.7 76 0.0017 35.9 30.8 32 91-122 163-194 (880)
73 PF04012 PspA_IM30: PspA/IM30 84.6 37 0.00081 32.2 14.9 55 164-218 26-80 (221)
74 TIGR03007 pepcterm_ChnLen poly 84.0 62 0.0013 34.3 26.4 24 293-316 352-375 (498)
75 PRK04863 mukB cell division pr 83.7 1.2E+02 0.0027 37.5 35.3 24 298-321 574-597 (1486)
76 PF15070 GOLGA2L5: Putative go 83.6 83 0.0018 35.4 29.2 24 97-120 40-63 (617)
77 PRK11637 AmiB activator; Provi 83.5 63 0.0014 34.0 26.8 14 393-406 364-377 (428)
78 PF11559 ADIP: Afadin- and alp 83.1 35 0.00075 30.7 17.6 115 138-271 36-150 (151)
79 PF00769 ERM: Ezrin/radixin/mo 83.0 31 0.00068 34.1 13.3 31 156-186 7-37 (246)
80 PF14992 TMCO5: TMCO5 family 82.8 28 0.00061 35.6 13.1 102 192-307 21-141 (280)
81 PF05701 WEMBL: Weak chloropla 82.0 84 0.0018 34.3 28.8 122 196-319 281-423 (522)
82 PF06120 Phage_HK97_TLTM: Tail 81.4 70 0.0015 33.0 16.6 103 202-315 54-167 (301)
83 PF09730 BicD: Microtubule-ass 80.8 1.1E+02 0.0025 35.1 20.1 155 163-317 274-461 (717)
84 PF05701 WEMBL: Weak chloropla 80.7 93 0.002 34.0 29.9 35 236-270 298-332 (522)
85 PF08614 ATG16: Autophagy prot 80.6 4.6 9.9E-05 38.1 6.3 46 275-320 123-168 (194)
86 PF09789 DUF2353: Uncharacteri 80.4 78 0.0017 33.0 16.2 145 173-319 14-177 (319)
87 KOG4460 Nuclear pore complex, 80.3 87 0.0019 35.2 16.4 68 223-292 652-719 (741)
88 PF05622 HOOK: HOOK protein; 80.1 0.55 1.2E-05 52.4 0.0 107 97-207 301-409 (713)
89 PF09755 DUF2046: Uncharacteri 80.0 80 0.0017 32.9 26.5 61 247-314 142-203 (310)
90 PF00038 Filament: Intermediat 79.9 66 0.0014 31.8 27.2 83 238-320 221-307 (312)
91 PF08317 Spc7: Spc7 kinetochor 79.9 75 0.0016 32.4 21.2 39 282-320 230-268 (325)
92 TIGR01010 BexC_CtrB_KpsE polys 79.9 74 0.0016 32.4 21.7 67 249-315 216-297 (362)
93 TIGR01843 type_I_hlyD type I s 79.6 74 0.0016 32.2 19.7 70 240-315 203-272 (423)
94 PF08317 Spc7: Spc7 kinetochor 79.3 78 0.0017 32.3 17.4 15 303-317 276-290 (325)
95 PF04849 HAP1_N: HAP1 N-termin 79.3 69 0.0015 33.2 14.6 66 236-301 230-302 (306)
96 KOG0976 Rho/Rac1-interacting s 78.8 1.4E+02 0.0031 35.1 23.5 119 95-217 250-372 (1265)
97 PF09730 BicD: Microtubule-ass 78.7 92 0.002 35.8 16.6 76 237-314 94-181 (717)
98 PF14662 CCDC155: Coiled-coil 78.7 68 0.0015 31.3 20.1 70 244-313 99-168 (193)
99 PF07926 TPR_MLP1_2: TPR/MLP1/ 78.6 48 0.001 29.5 16.7 100 162-263 25-128 (132)
100 PF09311 Rab5-bind: Rabaptin-l 78.4 4.5 9.7E-05 38.0 5.5 81 133-213 1-81 (181)
101 PF15066 CAGE1: Cancer-associa 77.8 38 0.00081 37.1 12.6 76 244-319 342-427 (527)
102 PF06818 Fez1: Fez1; InterPro 77.8 74 0.0016 31.2 15.1 51 165-215 56-106 (202)
103 PRK10884 SH3 domain-containing 77.5 19 0.00042 34.9 9.7 31 277-307 134-164 (206)
104 KOG4673 Transcription factor T 77.5 1.4E+02 0.0031 34.4 25.8 56 162-217 545-601 (961)
105 PRK10246 exonuclease subunit S 77.3 1.6E+02 0.0035 34.9 27.6 85 231-315 775-862 (1047)
106 KOG0018 Structural maintenance 77.0 1.8E+02 0.0038 35.1 19.3 66 150-215 209-274 (1141)
107 PF12795 MscS_porin: Mechanose 76.8 71 0.0015 31.0 13.4 51 165-215 82-132 (240)
108 TIGR01000 bacteriocin_acc bact 76.7 1.1E+02 0.0023 32.5 19.0 70 251-320 240-315 (457)
109 PF05911 DUF869: Plant protein 76.2 82 0.0018 36.5 15.4 49 158-206 593-641 (769)
110 PF04156 IncA: IncA protein; 75.3 68 0.0015 29.6 15.0 34 166-199 79-112 (191)
111 PF12325 TMF_TATA_bd: TATA ele 75.3 57 0.0012 29.3 11.3 37 179-215 20-56 (120)
112 PF10186 Atg14: UV radiation r 75.3 82 0.0018 30.4 15.4 13 392-404 261-273 (302)
113 PF13870 DUF4201: Domain of un 75.0 70 0.0015 29.6 16.7 68 242-318 107-174 (177)
114 KOG0612 Rho-associated, coiled 75.0 2.1E+02 0.0045 35.0 22.0 20 22-41 383-402 (1317)
115 KOG0249 LAR-interacting protei 74.9 1.7E+02 0.0037 34.0 18.5 29 159-187 161-189 (916)
116 PF12128 DUF3584: Protein of u 74.8 2E+02 0.0043 34.7 32.6 23 278-300 826-848 (1201)
117 PF04849 HAP1_N: HAP1 N-termin 74.4 1.1E+02 0.0025 31.7 16.7 16 187-202 109-124 (306)
118 PF04111 APG6: Autophagy prote 74.1 36 0.00077 34.9 11.0 85 238-322 48-132 (314)
119 PF06818 Fez1: Fez1; InterPro 73.9 94 0.002 30.5 14.0 42 231-272 64-105 (202)
120 PF05557 MAD: Mitotic checkpoi 73.7 13 0.00029 41.6 8.5 30 287-316 557-586 (722)
121 PF10473 CENP-F_leu_zip: Leuci 73.0 78 0.0017 29.2 15.3 26 187-212 15-40 (140)
122 PF12777 MT: Microtubule-bindi 71.8 7 0.00015 40.0 5.4 80 241-320 229-308 (344)
123 PF10473 CENP-F_leu_zip: Leuci 71.7 85 0.0018 29.0 14.9 22 196-217 10-31 (140)
124 PF01576 Myosin_tail_1: Myosin 71.6 1.3 2.8E-05 50.9 0.0 50 251-300 261-310 (859)
125 COG2433 Uncharacterized conser 71.6 38 0.00082 38.1 11.0 73 237-309 433-508 (652)
126 PF09755 DUF2046: Uncharacteri 71.5 1.3E+02 0.0029 31.2 18.7 63 252-314 111-174 (310)
127 KOG4673 Transcription factor T 71.4 2E+02 0.0044 33.3 26.5 46 277-322 582-631 (961)
128 PRK11281 hypothetical protein; 70.9 2.5E+02 0.0053 34.1 25.9 56 156-211 194-249 (1113)
129 KOG1853 LIS1-interacting prote 70.7 1.3E+02 0.0029 30.9 19.7 82 130-218 35-120 (333)
130 KOG4674 Uncharacterized conser 70.5 3.1E+02 0.0067 35.0 30.1 50 166-215 708-757 (1822)
131 PF10186 Atg14: UV radiation r 70.3 1.1E+02 0.0023 29.6 17.4 21 194-214 25-45 (302)
132 TIGR03007 pepcterm_ChnLen poly 70.0 1.5E+02 0.0033 31.3 24.6 55 160-214 167-229 (498)
133 PF05622 HOOK: HOOK protein; 69.6 1.5 3.3E-05 49.0 0.0 8 11-18 96-103 (713)
134 PF12252 SidE: Dot/Icm substra 69.3 2.2E+02 0.0047 34.6 16.7 142 148-293 1008-1178(1439)
135 TIGR02977 phageshock_pspA phag 69.2 1.1E+02 0.0024 29.4 14.7 55 165-219 28-82 (219)
136 PF05911 DUF869: Plant protein 68.2 2.4E+02 0.0052 32.8 24.1 65 155-219 86-150 (769)
137 PF13514 AAA_27: AAA domain 67.8 2.7E+02 0.0057 33.2 28.7 25 279-303 907-931 (1111)
138 PTZ00121 MAEBL; Provisional 67.1 3.4E+02 0.0074 34.3 24.9 7 145-151 1208-1214(2084)
139 PF14257 DUF4349: Domain of un 67.0 84 0.0018 30.7 11.5 60 244-310 129-190 (262)
140 PRK10929 putative mechanosensi 66.9 3E+02 0.0064 33.4 24.4 60 155-214 174-233 (1109)
141 TIGR03495 phage_LysB phage lys 66.3 68 0.0015 29.5 9.9 68 241-308 20-94 (135)
142 PF12325 TMF_TATA_bd: TATA ele 66.3 1E+02 0.0022 27.8 11.5 78 229-306 26-106 (120)
143 PF10234 Cluap1: Clusterin-ass 66.2 1.6E+02 0.0034 30.0 16.7 64 131-195 126-189 (267)
144 PF12128 DUF3584: Protein of u 65.9 3E+02 0.0066 33.2 30.8 25 250-274 438-462 (1201)
145 KOG0933 Structural maintenance 65.8 3E+02 0.0066 33.2 25.8 25 98-122 249-273 (1174)
146 KOG3647 Predicted coiled-coil 63.8 1.9E+02 0.0041 30.0 13.5 66 151-216 88-160 (338)
147 PF06120 Phage_HK97_TLTM: Tail 63.7 1.9E+02 0.0041 30.0 14.0 47 168-214 67-113 (301)
148 KOG0982 Centrosomal protein Nu 63.2 2.4E+02 0.0051 31.0 19.8 92 103-214 242-336 (502)
149 KOG0933 Structural maintenance 62.8 3.4E+02 0.0075 32.8 28.0 115 155-271 742-860 (1174)
150 PF10146 zf-C4H2: Zinc finger- 62.6 1.7E+02 0.0036 29.1 14.0 101 191-311 3-103 (230)
151 PF11180 DUF2968: Protein of u 61.3 1.5E+02 0.0032 29.0 11.6 86 224-323 96-181 (192)
152 KOG0804 Cytoplasmic Zn-finger 61.2 2.6E+02 0.0056 30.8 14.6 71 244-317 386-456 (493)
153 PRK09841 cryptic autophosphory 61.1 2.9E+02 0.0063 31.3 18.6 19 192-210 277-295 (726)
154 PF15254 CCDC14: Coiled-coil d 61.0 1.4E+02 0.0031 34.7 13.0 132 163-298 389-555 (861)
155 PF04889 Cwf_Cwc_15: Cwf15/Cwc 60.6 24 0.00052 35.1 6.4 11 84-94 156-166 (244)
156 PF01576 Myosin_tail_1: Myosin 60.5 2.8 6.2E-05 48.1 0.0 144 161-304 314-483 (859)
157 COG2433 Uncharacterized conser 59.7 1.8E+02 0.0038 33.1 13.3 41 171-211 418-458 (652)
158 PF07798 DUF1640: Protein of u 59.6 1.5E+02 0.0033 27.6 17.3 22 194-215 49-70 (177)
159 PF10481 CENP-F_N: Cenp-F N-te 59.3 2.2E+02 0.0047 29.5 12.9 70 241-317 61-130 (307)
160 PF04156 IncA: IncA protein; 59.1 1.5E+02 0.0032 27.3 15.4 20 247-266 144-163 (191)
161 PF10458 Val_tRNA-synt_C: Valy 59.0 88 0.0019 24.7 8.7 30 245-274 2-31 (66)
162 KOG0995 Centromere-associated 59.0 3.1E+02 0.0067 31.0 19.1 98 114-215 216-320 (581)
163 COG4372 Uncharacterized protei 58.4 2.8E+02 0.006 30.2 25.9 77 97-174 113-192 (499)
164 PRK10636 putative ABC transpor 57.8 79 0.0017 35.1 10.5 75 242-316 558-632 (638)
165 PF05384 DegS: Sensor protein 57.4 1.7E+02 0.0037 27.5 14.4 115 176-290 28-148 (159)
166 PF03961 DUF342: Protein of un 57.2 99 0.0021 32.8 10.7 77 238-315 332-408 (451)
167 KOG1853 LIS1-interacting prote 56.9 2.4E+02 0.0052 29.1 16.4 27 247-273 164-190 (333)
168 PF07851 TMPIT: TMPIT-like pro 56.3 1.9E+02 0.0042 30.3 12.3 44 366-409 122-165 (330)
169 PF07798 DUF1640: Protein of u 55.4 1.8E+02 0.0039 27.1 16.4 102 160-270 43-147 (177)
170 PF03962 Mnd1: Mnd1 family; I 55.1 1.6E+02 0.0035 28.0 10.8 26 190-215 70-95 (188)
171 PRK02119 hypothetical protein; 55.0 35 0.00075 28.0 5.5 31 282-312 23-53 (73)
172 KOG0288 WD40 repeat protein Ti 54.6 2.3E+02 0.0051 30.9 12.7 57 159-215 11-67 (459)
173 PF02841 GBP_C: Guanylate-bind 53.8 2.2E+02 0.0048 28.5 12.1 59 157-215 179-237 (297)
174 PF10146 zf-C4H2: Zinc finger- 53.7 2.4E+02 0.0051 28.0 13.2 98 166-272 6-107 (230)
175 PF09789 DUF2353: Uncharacteri 53.5 2.1E+02 0.0045 29.9 12.0 141 175-315 9-159 (319)
176 smart00787 Spc7 Spc7 kinetocho 53.0 2.8E+02 0.006 28.6 17.2 16 97-112 77-92 (312)
177 COG3206 GumC Uncharacterized p 52.1 3.1E+02 0.0068 29.0 26.0 51 249-303 344-394 (458)
178 PF04102 SlyX: SlyX; InterPro 52.0 98 0.0021 24.9 7.5 44 160-203 3-46 (69)
179 COG0419 SbcC ATPase involved i 51.9 4.4E+02 0.0096 30.6 31.7 59 257-315 385-443 (908)
180 KOG0962 DNA repair protein RAD 51.6 5.6E+02 0.012 31.7 20.2 57 159-215 207-263 (1294)
181 PF12808 Mto2_bdg: Micro-tubul 51.1 56 0.0012 25.6 5.7 41 142-182 10-50 (52)
182 PF05483 SCP-1: Synaptonemal c 50.5 4.6E+02 0.01 30.4 27.6 153 167-322 463-655 (786)
183 PF12329 TMF_DNA_bd: TATA elem 49.2 1.5E+02 0.0032 24.3 8.4 68 194-270 3-70 (74)
184 TIGR01005 eps_transp_fam exopo 49.2 4.4E+02 0.0094 29.8 27.6 24 293-316 373-396 (754)
185 COG1842 PspA Phage shock prote 47.9 2.9E+02 0.0062 27.3 14.5 18 192-209 55-72 (225)
186 PRK10803 tol-pal system protei 47.5 71 0.0015 31.8 7.4 51 161-211 40-90 (263)
187 PF04582 Reo_sigmaC: Reovirus 46.5 18 0.00039 37.7 3.1 123 191-322 30-152 (326)
188 TIGR02231 conserved hypothetic 46.4 3.1E+02 0.0067 29.6 12.5 30 241-270 139-168 (525)
189 KOG4637 Adaptor for phosphoino 45.9 4.3E+02 0.0092 28.7 15.7 54 241-297 231-284 (464)
190 PRK02793 phi X174 lysis protei 45.8 1.6E+02 0.0034 24.1 7.9 44 158-201 5-48 (72)
191 KOG3894 SNARE protein Syntaxin 45.8 25 0.00055 36.4 4.0 35 372-406 281-315 (316)
192 PF12777 MT: Microtubule-bindi 45.6 58 0.0012 33.5 6.6 53 174-226 234-286 (344)
193 PF03962 Mnd1: Mnd1 family; I 45.5 2.7E+02 0.0059 26.5 10.7 63 238-301 67-129 (188)
194 KOG3457 Sec61 protein transloc 45.1 17 0.00036 31.3 2.2 17 386-402 68-84 (88)
195 PF05529 Bap31: B-cell recepto 45.0 1.4E+02 0.0031 27.8 8.6 34 239-272 153-186 (192)
196 PF06156 DUF972: Protein of un 44.9 95 0.0021 27.3 6.9 46 277-322 10-55 (107)
197 TIGR02680 conserved hypothetic 44.9 6.9E+02 0.015 30.8 25.9 41 75-116 735-775 (1353)
198 PRK03918 chromosome segregatio 44.9 5.2E+02 0.011 29.4 36.2 43 279-321 388-430 (880)
199 KOG0979 Structural maintenance 44.8 6.5E+02 0.014 30.5 20.3 82 235-316 257-345 (1072)
200 PF05557 MAD: Mitotic checkpoi 44.7 25 0.00054 39.6 4.1 29 188-216 398-426 (722)
201 COG4467 Regulator of replicati 44.6 81 0.0017 28.4 6.4 44 277-320 10-53 (114)
202 PRK01203 prefoldin subunit alp 44.6 2.5E+02 0.0055 25.7 11.0 81 229-309 3-121 (130)
203 KOG0239 Kinesin (KAR3 subfamil 44.4 4.1E+02 0.0088 30.4 13.4 29 374-410 375-403 (670)
204 PF06716 DUF1201: Protein of u 44.1 35 0.00075 26.5 3.5 30 386-415 17-48 (54)
205 PRK13729 conjugal transfer pil 44.0 66 0.0014 35.2 7.0 54 249-316 71-124 (475)
206 PF02183 HALZ: Homeobox associ 44.0 1.2E+02 0.0027 22.8 6.5 40 231-270 3-42 (45)
207 PRK09343 prefoldin subunit bet 43.6 2.3E+02 0.0051 25.0 10.5 30 181-210 6-35 (121)
208 TIGR03185 DNA_S_dndD DNA sulfu 43.4 5.1E+02 0.011 28.9 30.7 70 246-315 390-461 (650)
209 KOG0980 Actin-binding protein 43.1 6.5E+02 0.014 30.1 33.4 19 2-21 252-270 (980)
210 PF10587 EF-1_beta_acid: Eukar 43.1 21 0.00045 24.8 2.0 12 68-79 9-20 (28)
211 PF10481 CENP-F_N: Cenp-F N-te 42.9 4.1E+02 0.0088 27.6 16.2 34 276-309 156-189 (307)
212 KOG1821 Uncharacterized conser 42.8 19 0.0004 38.9 2.6 45 29-73 403-447 (662)
213 KOG0240 Kinesin (SMY1 subfamil 41.9 5.7E+02 0.012 29.1 15.4 24 297-320 562-585 (607)
214 PF09753 Use1: Membrane fusion 41.5 59 0.0013 31.8 5.7 16 299-314 166-181 (251)
215 PF07106 TBPIP: Tat binding pr 41.0 2.9E+02 0.0062 25.3 10.8 28 247-274 116-143 (169)
216 PF06637 PV-1: PV-1 protein (P 40.8 3.9E+02 0.0085 29.0 11.8 12 158-169 328-339 (442)
217 PTZ00266 NIMA-related protein 39.9 3.1E+02 0.0066 33.0 12.0 77 71-149 443-519 (1021)
218 TIGR01005 eps_transp_fam exopo 39.8 6E+02 0.013 28.7 29.6 22 133-154 205-226 (754)
219 PRK11519 tyrosine kinase; Prov 39.7 6.1E+02 0.013 28.8 18.3 21 294-314 368-388 (719)
220 PF10211 Ax_dynein_light: Axon 39.6 2.7E+02 0.0058 26.6 9.6 12 101-112 81-92 (189)
221 PF13851 GAS: Growth-arrest sp 39.1 3.6E+02 0.0078 25.9 22.1 132 158-301 66-201 (201)
222 KOG0993 Rab5 GTPase effector R 39.0 5.7E+02 0.012 28.2 16.9 171 90-315 42-215 (542)
223 PF02403 Seryl_tRNA_N: Seryl-t 38.8 1.4E+02 0.003 25.2 6.9 75 186-266 26-100 (108)
224 PRK13729 conjugal transfer pil 38.8 1.5E+02 0.0033 32.5 8.7 56 158-213 66-121 (475)
225 PF15175 SPATA24: Spermatogene 38.7 3.5E+02 0.0075 25.6 10.2 62 141-202 8-83 (153)
226 KOG0249 LAR-interacting protei 38.6 7.2E+02 0.016 29.3 17.7 18 251-268 241-258 (916)
227 KOG0999 Microtubule-associated 38.6 6.5E+02 0.014 28.8 23.8 60 111-174 43-102 (772)
228 PRK14127 cell division protein 38.1 1.4E+02 0.0031 26.5 7.0 55 240-294 37-104 (109)
229 KOG4674 Uncharacterized conser 38.0 1E+03 0.022 30.8 28.5 164 154-317 710-886 (1822)
230 KOG1962 B-cell receptor-associ 37.8 3.4E+02 0.0074 27.0 10.2 65 257-321 130-197 (216)
231 KOG0964 Structural maintenance 37.7 8.3E+02 0.018 29.7 27.8 107 97-206 258-373 (1200)
232 PF12718 Tropomyosin_1: Tropom 37.4 3.2E+02 0.007 24.9 18.6 86 130-216 50-135 (143)
233 PF12761 End3: Actin cytoskele 36.9 4.2E+02 0.009 26.0 11.8 91 163-267 98-194 (195)
234 COG1842 PspA Phage shock prote 36.2 4.4E+02 0.0095 26.1 12.6 77 130-212 67-143 (225)
235 PRK00736 hypothetical protein; 36.1 2.1E+02 0.0046 23.1 7.2 37 161-197 5-41 (68)
236 PRK04406 hypothetical protein; 36.0 1.8E+02 0.004 24.0 6.9 42 279-320 8-49 (75)
237 PRK08476 F0F1 ATP synthase sub 35.7 3.3E+02 0.0072 24.5 12.9 19 277-295 120-138 (141)
238 smart00787 Spc7 Spc7 kinetocho 35.3 5.2E+02 0.011 26.7 17.2 22 248-269 205-226 (312)
239 PF15066 CAGE1: Cancer-associa 35.3 6.7E+02 0.015 27.9 14.9 61 164-224 386-447 (527)
240 PF05110 AF-4: AF-4 proto-onco 35.2 19 0.0004 43.3 1.4 13 194-206 951-963 (1191)
241 PRK13169 DNA replication intia 35.2 1.7E+02 0.0036 26.1 7.0 46 277-322 10-55 (110)
242 COG4026 Uncharacterized protei 35.0 2.2E+02 0.0048 28.9 8.4 10 279-288 195-204 (290)
243 COG2900 SlyX Uncharacterized p 34.9 2.7E+02 0.0059 23.3 7.9 50 156-205 3-52 (72)
244 PRK00295 hypothetical protein; 34.6 2.4E+02 0.0053 22.7 7.3 38 161-198 5-42 (68)
245 PRK11578 macrolide transporter 34.1 5.2E+02 0.011 26.3 12.6 78 239-320 105-182 (370)
246 PF10212 TTKRSYEDQ: Predicted 34.1 5.9E+02 0.013 28.5 12.2 27 191-217 429-455 (518)
247 PF09486 HrpB7: Bacterial type 33.9 4.1E+02 0.0089 25.1 15.0 36 163-198 17-52 (158)
248 PRK15178 Vi polysaccharide exp 33.8 6.6E+02 0.014 27.4 22.2 23 104-126 171-193 (434)
249 TIGR03185 DNA_S_dndD DNA sulfu 33.4 7.2E+02 0.016 27.7 27.3 43 277-320 372-415 (650)
250 KOG4603 TBP-1 interacting prot 33.1 2.3E+02 0.005 27.6 7.9 40 233-272 79-118 (201)
251 PF06428 Sec2p: GDP/GTP exchan 32.7 43 0.00093 29.2 2.9 83 183-273 2-84 (100)
252 PF06770 Arif-1: Actin-rearran 32.5 55 0.0012 31.9 3.8 30 376-405 163-192 (196)
253 PRK10361 DNA recombination pro 32.3 7.3E+02 0.016 27.4 25.9 32 158-189 71-102 (475)
254 PF04977 DivIC: Septum formati 31.9 1E+02 0.0022 24.1 4.7 29 238-266 22-50 (80)
255 PF10267 Tmemb_cc2: Predicted 31.8 6.8E+02 0.015 27.0 12.6 22 177-198 246-267 (395)
256 PRK02793 phi X174 lysis protei 31.8 2.3E+02 0.005 23.1 6.8 40 279-318 5-44 (72)
257 PF04102 SlyX: SlyX; InterPro 31.1 2.8E+02 0.006 22.2 7.5 51 166-216 2-52 (69)
258 KOG0018 Structural maintenance 31.0 1.1E+03 0.023 29.0 26.7 39 277-315 404-442 (1141)
259 PF04859 DUF641: Plant protein 30.8 72 0.0016 29.2 4.1 56 229-284 76-131 (131)
260 TIGR02231 conserved hypothetic 30.7 7.2E+02 0.016 26.9 13.3 81 236-316 74-172 (525)
261 PF06657 Cep57_MT_bd: Centroso 30.6 2.3E+02 0.0051 23.5 6.8 26 276-301 51-76 (79)
262 PRK04406 hypothetical protein; 30.1 3.2E+02 0.0069 22.6 8.4 41 158-198 8-48 (75)
263 PF07716 bZIP_2: Basic region 30.1 2.1E+02 0.0046 21.6 6.0 33 236-268 21-53 (54)
264 PRK01156 chromosome segregatio 30.0 9E+02 0.02 27.8 28.0 21 244-264 480-500 (895)
265 PF08172 CASP_C: CASP C termin 30.0 5.8E+02 0.013 25.6 10.8 35 235-269 88-122 (248)
266 PF10168 Nup88: Nuclear pore c 29.7 9.2E+02 0.02 27.8 19.4 28 274-301 631-658 (717)
267 PF10234 Cluap1: Clusterin-ass 29.6 3.3E+02 0.0073 27.8 8.9 67 236-302 179-252 (267)
268 PRK10803 tol-pal system protei 29.5 1.3E+02 0.0028 29.9 6.1 41 280-320 45-85 (263)
269 PF08409 DUF1736: Domain of un 29.2 60 0.0013 27.3 3.1 26 381-406 21-46 (80)
270 PRK10698 phage shock protein P 28.8 5.6E+02 0.012 25.0 14.9 18 194-211 57-74 (222)
271 KOG0963 Transcription factor/C 28.7 9.4E+02 0.02 27.6 24.4 33 238-270 233-265 (629)
272 PRK00736 hypothetical protein; 28.4 3.1E+02 0.0068 22.1 7.0 44 158-201 9-52 (68)
273 KOG2264 Exostosin EXT1L [Signa 28.3 3.2E+02 0.0069 31.3 9.1 56 247-316 93-148 (907)
274 PF15456 Uds1: Up-regulated Du 28.2 4.5E+02 0.0098 23.7 10.1 40 175-214 8-47 (124)
275 KOG2257 N-acetylglucosaminyltr 27.7 51 0.0011 30.5 2.6 26 387-412 11-36 (135)
276 PF10205 KLRAQ: Predicted coil 27.7 3E+02 0.0066 24.4 7.2 37 281-317 25-61 (102)
277 PF13747 DUF4164: Domain of un 27.6 3.8E+02 0.0083 22.7 11.3 78 103-185 7-84 (89)
278 PF11365 DUF3166: Protein of u 27.6 3.7E+02 0.008 23.5 7.7 40 177-216 3-42 (96)
279 PF10805 DUF2730: Protein of u 27.5 2.4E+02 0.0052 24.4 6.6 21 254-274 42-63 (106)
280 PF09738 DUF2051: Double stran 27.4 3.7E+02 0.008 27.8 8.9 22 295-316 139-160 (302)
281 PF02403 Seryl_tRNA_N: Seryl-t 27.2 3.8E+02 0.0082 22.6 8.2 65 240-308 36-100 (108)
282 PF10267 Tmemb_cc2: Predicted 27.2 8.1E+02 0.018 26.4 17.3 25 369-394 359-383 (395)
283 PF14992 TMCO5: TMCO5 family 27.1 6.9E+02 0.015 25.8 10.7 100 97-215 25-135 (280)
284 KOG4571 Activating transcripti 27.1 1.4E+02 0.0031 30.9 5.8 30 241-270 256-285 (294)
285 PF04582 Reo_sigmaC: Reovirus 26.8 1.4E+02 0.003 31.3 5.8 19 251-269 116-134 (326)
286 KOG2129 Uncharacterized conser 26.7 8E+02 0.017 27.2 11.4 133 184-319 45-202 (552)
287 PF11559 ADIP: Afadin- and alp 26.3 4.7E+02 0.01 23.4 16.2 10 238-247 138-147 (151)
288 COG3524 KpsE Capsule polysacch 26.3 8.1E+02 0.018 26.1 15.6 177 221-407 153-366 (372)
289 PF08657 DASH_Spc34: DASH comp 25.5 1.8E+02 0.004 29.3 6.3 70 236-305 183-255 (259)
290 TIGR03017 EpsF chain length de 25.3 7.8E+02 0.017 25.5 23.8 174 129-321 144-336 (444)
291 PRK00888 ftsB cell division pr 25.1 1.5E+02 0.0032 25.8 4.9 29 239-267 33-61 (105)
292 PF13870 DUF4201: Domain of un 25.1 5.5E+02 0.012 23.7 15.3 117 190-321 7-130 (177)
293 smart00338 BRLZ basic region l 25.1 2.2E+02 0.0048 22.0 5.5 31 240-270 33-63 (65)
294 PF04201 TPD52: Tumour protein 25.0 1.7E+02 0.0036 27.9 5.5 48 246-293 28-80 (162)
295 PF08826 DMPK_coil: DMPK coile 24.9 3.7E+02 0.008 21.6 9.0 58 143-211 4-61 (61)
296 PF15397 DUF4618: Domain of un 24.9 7.5E+02 0.016 25.2 18.1 135 154-299 6-144 (258)
297 PF15188 CCDC-167: Coiled-coil 24.7 4.5E+02 0.0097 22.6 7.8 59 247-305 5-66 (85)
298 PF01920 Prefoldin_2: Prefoldi 24.7 3.9E+02 0.0085 21.9 9.5 33 238-270 67-99 (106)
299 PF10779 XhlA: Haemolysin XhlA 24.5 2.1E+02 0.0046 22.9 5.4 46 245-290 4-49 (71)
300 PF12795 MscS_porin: Mechanose 24.1 6.6E+02 0.014 24.3 19.4 94 152-246 76-170 (240)
301 PRK00295 hypothetical protein; 24.0 3.9E+02 0.0084 21.6 7.2 43 159-201 10-52 (68)
302 COG4372 Uncharacterized protei 23.9 9.9E+02 0.021 26.2 22.3 30 244-273 214-243 (499)
303 PRK04325 hypothetical protein; 23.9 4E+02 0.0086 21.9 6.9 37 161-197 9-45 (74)
304 KOG3385 V-SNARE [Intracellular 23.9 80 0.0017 28.6 3.0 30 276-305 26-55 (118)
305 PF06143 Baculo_11_kDa: Baculo 23.9 1.6E+02 0.0035 25.2 4.7 17 365-381 20-36 (84)
306 PF02050 FliJ: Flagellar FliJ 23.8 3.9E+02 0.0085 21.6 12.8 79 182-271 5-83 (123)
307 KOG0804 Cytoplasmic Zn-finger 23.7 1E+03 0.022 26.4 13.6 20 277-296 437-456 (493)
308 PF09304 Cortex-I_coil: Cortex 23.6 5.4E+02 0.012 23.1 13.9 27 154-180 9-35 (107)
309 TIGR03752 conj_TIGR03752 integ 23.6 7.1E+02 0.015 27.6 10.6 12 245-256 121-132 (472)
310 PRK05892 nucleoside diphosphat 23.6 2.8E+02 0.0061 25.7 6.7 15 277-291 56-70 (158)
311 PF05529 Bap31: B-cell recepto 23.4 6.1E+02 0.013 23.6 9.7 64 247-317 118-189 (192)
312 PF12761 End3: Actin cytoskele 23.1 7.2E+02 0.016 24.4 9.6 29 229-257 92-120 (195)
313 PLN02320 seryl-tRNA synthetase 22.4 3E+02 0.0066 30.4 7.6 25 278-302 140-164 (502)
314 PF14662 CCDC155: Coiled-coil 22.3 7.5E+02 0.016 24.3 22.3 86 227-312 89-188 (193)
315 PF04094 DUF390: Protein of un 22.3 1.3E+03 0.029 27.1 20.0 35 276-310 639-673 (828)
316 PRK06975 bifunctional uroporph 21.9 1.2E+03 0.026 26.4 17.6 54 162-216 358-412 (656)
317 KOG2264 Exostosin EXT1L [Signa 21.8 8.6E+02 0.019 28.0 10.8 54 158-211 97-150 (907)
318 PF14257 DUF4349: Domain of un 21.8 5.4E+02 0.012 25.1 8.6 32 184-215 127-158 (262)
319 PF11180 DUF2968: Protein of u 21.7 7.7E+02 0.017 24.2 13.7 37 238-274 152-188 (192)
320 TIGR02977 phageshock_pspA phag 21.1 7.5E+02 0.016 23.8 20.0 57 160-216 91-147 (219)
321 PF00435 Spectrin: Spectrin re 21.0 4E+02 0.0086 20.6 9.6 59 240-299 41-104 (105)
322 PF14851 FAM176: FAM176 family 20.8 2.2E+02 0.0047 26.8 5.3 20 70-89 115-134 (153)
323 PF14723 SSFA2_C: Sperm-specif 20.8 5.2E+02 0.011 25.1 7.9 21 197-217 106-126 (179)
324 PRK05431 seryl-tRNA synthetase 20.8 3.8E+02 0.0082 28.6 7.8 77 188-270 27-103 (425)
325 KOG3064 RNA-binding nuclear pr 20.7 55 0.0012 33.5 1.5 13 61-73 248-261 (303)
326 COG3883 Uncharacterized protei 20.6 9.3E+02 0.02 24.7 20.3 63 153-215 37-99 (265)
327 KOG0163 Myosin class VI heavy 20.5 7.2E+02 0.016 29.6 10.1 21 108-128 955-975 (1259)
328 KOG2140 Uncharacterized conser 20.4 42 0.00091 37.6 0.7 28 50-77 670-698 (739)
329 PF14770 TMEM18: Transmembrane 20.4 60 0.0013 29.3 1.6 39 389-427 17-61 (123)
330 PF04012 PspA_IM30: PspA/IM30 20.4 7.3E+02 0.016 23.4 21.5 55 158-212 88-142 (221)
331 PF14817 HAUS5: HAUS augmin-li 20.4 1.3E+03 0.029 26.4 18.0 41 281-321 395-435 (632)
332 PF15458 NTR2: Nineteen comple 20.3 3.7E+02 0.0079 26.8 7.2 44 276-319 209-252 (254)
No 1
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=99.95 E-value=1.9e-26 Score=241.85 Aligned_cols=163 Identities=29% Similarity=0.413 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 014127 232 EFEREILEAEYTFIADKII----QLEDKAKKLEGNIEMTRKEIEDP--TEVEIELKRRLGQLTDHLIQKQAQVEALSSEK 305 (430)
Q Consensus 232 EaE~e~l~qE~~~l~~el~----~lq~klk~lE~EIq~Lr~~ls~p--S~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk 305 (430)
|.|.+++.+|+.++.+++. .++.++...+.||++|+.+++.. +....|+|+||++||++||+||++||.|.+||
T Consensus 336 e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek 415 (511)
T PF09787_consen 336 EAELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQLESLGSEK 415 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhh
Confidence 7888899999999998885 56667777899999999998663 34678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCC---CCCCCCC--cccCcccCCCCCcCcchhh--hhhcccchhhhhhhhHHHHHHHHHHHH
Q 014127 306 ATLAFRIEAVSRLLDENKPV---TGSSSRD--LEFGAWDLSQSNLRPLFEE--KIRSGKKHIGSLLKQLDSIFLAGVVFL 378 (430)
Q Consensus 306 ~AL~lqLERle~~~~e~~~~---s~~s~~d--~e~~~~~~~~s~lrP~f~~--~~a~~~r~~k~al~~lD~~~lrl~rfL 378 (430)
++|.+||||+.+.+++.... +..+... ..++. ..++.|++.. ++.++.|+++++++.||+|++++|+||
T Consensus 416 ~al~lqlErl~~~l~~~~~~~~~~~~~~~~~~~~~d~----~~r~~~~~~~~~~d~~~~~r~~~a~~~iD~~~ir~g~fL 491 (511)
T PF09787_consen 416 NALRLQLERLETQLKEEASNNRPSSILMKYSNSEDDA----ESRVPLLMKDSPHDIGVARRVKRAASVIDSFSIRLGIFL 491 (511)
T ss_pred hhccccHHHHHHHHHhhccCCCCchhhHhhccCCCch----hhhhhhhccCCCccchHHHHHHHHHHHHhHhhHHHHHHH
Confidence 99999999999988852221 1111111 11111 1222222222 223457999999999999999999999
Q ss_pred hhchhhHHHHHHHHHHHHHH
Q 014127 379 RRNPIAKLWSLVYLVCLHLW 398 (430)
Q Consensus 379 rr~p~aRl~fi~Y~v~LHlw 398 (430)
||||++|+|||+||++||||
T Consensus 492 rr~p~~R~~~i~Y~~~LhlW 511 (511)
T PF09787_consen 492 RRYPMARIFVIIYMALLHLW 511 (511)
T ss_pred hcCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999
No 2
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=99.94 E-value=7.8e-25 Score=224.17 Aligned_cols=169 Identities=17% Similarity=0.136 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 014127 236 EILEAEYTFIADKII----QLEDKAKKLEGNIEMTRKEIEDPTE--VEIELKRRLGQLTDHLIQKQAQVEALSSEKATLA 309 (430)
Q Consensus 236 e~l~qE~~~l~~el~----~lq~klk~lE~EIq~Lr~~ls~pS~--~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~ 309 (430)
+..++|..+....+. .+|.++...+.+|++|+.++...+- ...+|+.+.++||++|++||+++|++..+++.|.
T Consensus 379 ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~r~~~~s~~~l~~~~~qLt~tl~qkq~~le~v~~~~~~ln 458 (554)
T KOG4677|consen 379 ECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKLRAWNDSVDALFTTKNQLTYTLKQKQIGLERVVEILHKLN 458 (554)
T ss_pred HHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHHHHhhhhhHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455555555555553 6777888899999999999987653 3789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCcccCcccCCCCCcCcchhhhhhcccchhhhhhhhHHHHHHHHHHHHhhchhhHHHHH
Q 014127 310 FRIEAVSRLLDENKPVTGSSSRDLEFGAWDLSQSNLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSL 389 (430)
Q Consensus 310 lqLERle~~~~e~~~~s~~s~~d~e~~~~~~~~s~lrP~f~~~~a~~~r~~k~al~~lD~~~lrl~rfLrr~p~aRl~fi 389 (430)
++||||+........+ ...+++ .+++ ..++.+.|+|.+... ..++..+++.+|+++++++.|+|+||.+|+||+
T Consensus 459 ~~lerLq~~~N~~~~v-~~~~~~--n~~~-~~~~~v~~l~~d~~~--~~q~r~a~s~VD~~s~~l~~~lr~~psArif~~ 532 (554)
T KOG4677|consen 459 APLERLQEYVNLVEDV-DTKLNL--NTKF-KCHDVVIDLYRDLKD--RQQLRAARSKVDKGSAELEKILRLLPSARIFWK 532 (554)
T ss_pred hhHHHHHHHhcccccc-ceeecc--CCCc-ccccccchHhhhhhh--hHHHHHHHhhcchhhHHHHHHHhcCchhHHHHH
Confidence 9999998754311111 111111 1111 123334467776533 267788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCC
Q 014127 390 VYLVCLHLWVIYILLSHSQSS 410 (430)
Q Consensus 390 ~Y~v~LHlwV~~vL~~~s~~s 410 (430)
+||++|||||||||++|||..
T Consensus 533 ~YmallHLWvmivlLTYTPEm 553 (554)
T KOG4677|consen 533 NYMALLHLWVMIVLLTYTPEM 553 (554)
T ss_pred HHHHHHHHHHHHHHhhcCccC
Confidence 999999999999999999974
No 3
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=99.59 E-value=2.3e-14 Score=139.56 Aligned_cols=130 Identities=24% Similarity=0.396 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHhcCCC-CCCC----------------CCCcccCc
Q 014127 277 EIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRL--LDENKPV-TGSS----------------SRDLEFGA 337 (430)
Q Consensus 277 e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~--~~e~~~~-s~~s----------------~~d~e~~~ 337 (430)
..|||..++.+-+.+-.=|..+++|.+++-.| .||+.-+ |...... +... ..|.+.+.
T Consensus 95 n~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL---YEKiRylqSY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~r 171 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRREVESLRADNVKL---YEKIRYLQSYNNKGSGSSSSAVSNSPGRSSVSPEPGGSSDVESNR 171 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhCcccccCCCcccccCCCCcccCCCCCCCCCchhHHH
Confidence 56788888888888888888888888887766 3454332 2221101 0000 01111111
Q ss_pred cc-CCCCCcCcc--hhhhhhcccchhhhhhhhHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhccCCCcc
Q 014127 338 WD-LSQSNLRPL--FEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHSQSSAE 412 (430)
Q Consensus 338 ~~-~~~s~lrP~--f~~~~a~~~r~~k~al~~lD~~~lrl~rfLrr~p~aRl~fi~Y~v~LHlwV~~vL~~~s~~s~~ 412 (430)
+. .+-..+.|+ |..... .|. .+.|+|+|++++.+||++++|+++|++||||||+||+|||++||+++.++++
T Consensus 172 Y~~~YE~~l~PF~~F~~~E~--~R~-~~~L~~~eR~~ls~~r~vL~nr~~R~~f~~Y~l~LH~lvf~~l~~~~~~~~~ 246 (248)
T PF08172_consen 172 YSSAYEESLNPFAAFRKRER--QRR-YKRLSPPERIFLSLTRFVLSNRTTRMLFFFYCLGLHLLVFFVLYYMSHSTSM 246 (248)
T ss_pred HHHHHHhccChHHHHhHhhH--HHH-HhcCChHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 11 122345575 665554 345 4489999999999999999999999999999999999999999997666443
No 4
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=98.66 E-value=0.00012 Score=79.32 Aligned_cols=46 Identities=24% Similarity=0.280 Sum_probs=42.9
Q ss_pred chhhhhhhhHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHH
Q 014127 358 KHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILL 404 (430)
Q Consensus 358 r~~k~al~~lD~~~lrl~rfLrr~p~aRl~fi~Y~v~LHlwV~~vL~ 404 (430)
++|+ .+.++|++++.+++++..++++|.+||||+|+||++||++|+
T Consensus 570 ~k~~-~l~~~~~~~~s~~r~~l~nk~~r~~~~~y~i~lh~~v~~~l~ 615 (629)
T KOG0963|consen 570 RKYK-RLGSFERITLSLGRTLLFNKMTRTLFFFYTIGLHLLVFIVLY 615 (629)
T ss_pred hhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 689999999999999999999999999999999999999998
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.73 E-value=0.14 Score=57.68 Aligned_cols=14 Identities=14% Similarity=0.190 Sum_probs=5.1
Q ss_pred HHHHHHHHhhHHHH
Q 014127 295 QAQVEALSSEKATL 308 (430)
Q Consensus 295 QtqLEsLssEk~AL 308 (430)
+.+++.+..+...+
T Consensus 921 ~~~~~~~~~~~~~l 934 (1179)
T TIGR02168 921 REKLAQLELRLEGL 934 (1179)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.67 E-value=0.18 Score=57.31 Aligned_cols=30 Identities=10% Similarity=0.214 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 014127 279 ELKRRLGQLTDHLIQKQAQVEALSSEKATL 308 (430)
Q Consensus 279 ELE~RL~~LTe~LIqKQtqLEsLssEk~AL 308 (430)
.++.++..|...+-..+..++.+..+...+
T Consensus 431 ~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~ 460 (1164)
T TIGR02169 431 GIEAKINELEEEKEDKALEIKKQEWKLEQL 460 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333333
No 7
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.61 E-value=0.029 Score=54.34 Aligned_cols=173 Identities=20% Similarity=0.253 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHh
Q 014127 132 SELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 211 (430)
Q Consensus 132 ~el~~~m~e~~~A~elE~~aH~aTR~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqr 211 (430)
..=-.+|-.-+.-++.++......-..+..++..++....+..+++-.+.......-.++..|+.++........+.-++
T Consensus 35 E~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k 114 (237)
T PF00261_consen 35 EAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERK 114 (237)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555666667777777777777888888888888888888888777777777778888888888777777777666
Q ss_pred hhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCChhHHHHHHHH
Q 014127 212 NSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI-------EDPTEVEIELKRRL 284 (430)
Q Consensus 212 l~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~l-------s~pS~~e~ELE~RL 284 (430)
+..+..+. .++..++....+.+..++.++..++.+|..+...+ ...+.-...++.+|
T Consensus 115 ~~E~~rkl----------------~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i 178 (237)
T PF00261_consen 115 YEEVERKL----------------KVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKI 178 (237)
T ss_dssp HHHCHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----------------HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 66554331 11222233333444444455555555555444444 33344578999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 014127 285 GQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLD 320 (430)
Q Consensus 285 ~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~ 320 (430)
+.|++.|-.=-+.++........|..++.+++..+.
T Consensus 179 ~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 179 RDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999876544
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.61 E-value=0.21 Score=56.41 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 014127 280 LKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEA 314 (430)
Q Consensus 280 LE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLER 314 (430)
++.++..+-..+-.-+..+..+..+...+..++..
T Consensus 899 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~ 933 (1179)
T TIGR02168 899 LSEELRELESKRSELRRELEELREKLAQLELRLEG 933 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444444444
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.48 E-value=0.32 Score=55.25 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 014127 279 ELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 315 (430)
Q Consensus 279 ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERl 315 (430)
.++..+..+...+-..+.++..+..+...+.-++..+
T Consensus 452 ~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l 488 (1164)
T TIGR02169 452 KQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKL 488 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444433
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.26 E-value=0.23 Score=60.98 Aligned_cols=196 Identities=23% Similarity=0.329 Sum_probs=131.1
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 103 ENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQK 182 (430)
Q Consensus 103 e~~~arl~~ek~~l~k~l~e~~~~q~~ea~el~~~m~e~~~A~elE~~aH~aTR~qA~aREa~LE~enae~akALA~~Qr 182 (430)
+......+.+...+...|+.-+..-. |-.+....+..-...+.++++.-..+.++|..++..|.....++..-|...+-
T Consensus 837 ee~~~~~~~e~~~l~~~l~~~e~~~~-ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~ 915 (1930)
T KOG0161|consen 837 EEEMRAKEEEIQKLKEELQKSESKRK-ELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKE 915 (1930)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443332222 33333334444555688888889999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 183 KLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGN 262 (430)
Q Consensus 183 ~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~E 262 (430)
.+++...+...++.+...++.++..|...+.+... .+.-+..|+..+..++..+++.+..+++.
T Consensus 916 ~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~----------------~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~ 979 (1930)
T KOG0161|consen 916 RLEEEEEKNAELERKKRKLEQEVQELKEQLEELEL----------------TLQKLELEKNAAENKLKNLEEEINSLDEN 979 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888888888877766554421 11112223333444444444444444444
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Q 014127 263 IEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDEN 322 (430)
Q Consensus 263 Iq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~e~ 322 (430)
|..| +....+||.+++.|++.|.....++..+.--++-+.-+|+.++..+++.
T Consensus 980 ~~kL-------~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e 1032 (1930)
T KOG0161|consen 980 ISKL-------SKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLERE 1032 (1930)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 4456679999999999999999999999888888888888876555443
No 11
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.8 Score=52.04 Aligned_cols=126 Identities=17% Similarity=0.206 Sum_probs=76.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 188 TNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTR 267 (430)
Q Consensus 188 ~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr 267 (430)
..+...|.++++.|...+..|-.+|++..-.....++.+..-..-- +.-..|+..++++|..++.++..+-.|-|.|-
T Consensus 436 nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~--e~~isei~qlqarikE~q~kl~~l~~Ekq~l~ 513 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQR--ELMISEIDQLQARIKELQEKLQKLAPEKQELN 513 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3456667777777777777777777777665555555553322222 33445788888999999999988888888887
Q ss_pred HHhCC------CC-hhHHHHHHHH-------HHHHHHHHH--H------------HHHHHHHHhhHHHHHHHHHHH
Q 014127 268 KEIED------PT-EVEIELKRRL-------GQLTDHLIQ--K------------QAQVEALSSEKATLAFRIEAV 315 (430)
Q Consensus 268 ~~ls~------pS-~~e~ELE~RL-------~~LTe~LIq--K------------QtqLEsLssEk~AL~lqLERl 315 (430)
.++.+ ++ .-..+|+.-+ +.|-|+|.. | -+|++.|..+.+++.+.+|.+
T Consensus 514 ~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~ 589 (1118)
T KOG1029|consen 514 HQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEEL 589 (1118)
T ss_pred HHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 76643 22 2133443221 112222211 1 246677777778888877774
No 12
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.09 E-value=0.81 Score=56.49 Aligned_cols=169 Identities=22% Similarity=0.220 Sum_probs=96.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccch
Q 014127 142 MDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIY 221 (430)
Q Consensus 142 ~~A~elE~~aH~aTR~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~ 221 (430)
-+.++-++..+..+-+....--.+|+........-|..++.++++....++.|..++..++.....|...+..-....
T Consensus 1043 ~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r-- 1120 (1930)
T KOG0161|consen 1043 KRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASR-- 1120 (1930)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 344555555555555555555556666666666666666677777777677776666666666666666554432211
Q ss_pred hhHHHhhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhCCCChh--------HHHHHHHHHH
Q 014127 222 LKRLAASKGVEFEREILEAEYTFIADKII-------QLEDKAKKLEGNIEMTRKEIEDPTEV--------EIELKRRLGQ 286 (430)
Q Consensus 222 a~q~~a~~~~EaE~e~l~qE~~~l~~el~-------~lq~klk~lE~EIq~Lr~~ls~pS~~--------e~ELE~RL~~ 286 (430)
...+..+.-+..+|..+..++. .+...-++.+.+++.|++.+...+.. .......+..
T Consensus 1121 -------~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~e 1193 (1930)
T KOG0161|consen 1121 -------AKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAE 1193 (1930)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 1111112333444444444442 22233366788999999888654321 2233455677
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 014127 287 LTDHLIQKQAQVEALSSEKATLAFRIEAVSRLL 319 (430)
Q Consensus 287 LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~ 319 (430)
|+++|-+.|..=-.+..++..|+.....+....
T Consensus 1194 l~~qle~l~~~k~~lekek~~lq~e~~~l~~ev 1226 (1930)
T KOG0161|consen 1194 LQEQLEQLQKDKAKLEKEKSDLQREIADLAAEL 1226 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666666677776666666654433
No 13
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.65 Score=52.75 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014127 276 VEIELKRRLGQLTDHLIQKQAQVEALSS 303 (430)
Q Consensus 276 ~e~ELE~RL~~LTe~LIqKQtqLEsLss 303 (430)
...-+..++..|-+.+..+|.+.|.+-.
T Consensus 564 eidi~n~qlkelk~~~~~q~lake~~yk 591 (1118)
T KOG1029|consen 564 EIDIFNNQLKELKEDVNSQQLAKEELYK 591 (1118)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999998876
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.88 E-value=1.5 Score=51.63 Aligned_cols=225 Identities=21% Similarity=0.253 Sum_probs=123.2
Q ss_pred hHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 014127 96 GDAIKERENMVARLEGEKQSLEKILEERAKQ------QVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETA 169 (430)
Q Consensus 96 ~~~i~ere~~~arl~~ek~~l~k~l~e~~~~------q~~ea~el~~~m~e~~~A~elE~~aH~aTR~qA~aREa~LE~e 169 (430)
...+..-..-+..++.....+...+.+...+ +...+..-......=+..++.++............|..+++..
T Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1163)
T COG1196 687 EEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEE 766 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555444444332 1222333344444555566677777777777777788888888
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH-------HhhhhcccccchhhHHHhh-----hhhhHHHHH
Q 014127 170 NADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS-------QRNSNTHQTGIYLKRLAAS-----KGVEFEREI 237 (430)
Q Consensus 170 nae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLr-------qrl~~~~q~~~~a~q~~a~-----~~~EaE~e~ 237 (430)
+..+...++..+..++.-......+.+.+...+.....++ .++....+....+.+-+.. ...+.+..-
T Consensus 767 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~ 846 (1163)
T COG1196 767 LESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDE 846 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877777766666665544333333333333333333333 3322222222111111110 111111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 014127 238 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 317 (430)
Q Consensus 238 l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~ 317 (430)
+..++..++.++..++.++..++.++..+...+........+++++|+.+...+.+...+++.+....+.+..++.++..
T Consensus 847 l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 926 (1163)
T COG1196 847 LEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEV 926 (1163)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444555555555555555555555445678899999999999999999999999999988888877764
Q ss_pred HHH
Q 014127 318 LLD 320 (430)
Q Consensus 318 ~~~ 320 (430)
...
T Consensus 927 ~~~ 929 (1163)
T COG1196 927 ELP 929 (1163)
T ss_pred HHH
Confidence 443
No 15
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.87 E-value=1.2 Score=50.62 Aligned_cols=133 Identities=19% Similarity=0.258 Sum_probs=91.5
Q ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 179 AAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKK 258 (430)
Q Consensus 179 ~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~ 258 (430)
++|.-|+.+-.++..|+-.+..++.+...|+.++.-+..... ....+.+..+.+..++..++.++.-++..
T Consensus 228 alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~---------~~~k~le~~~s~~~~mK~k~d~~~~eL~r 298 (775)
T PF10174_consen 228 ALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRD---------RLDKQLEVYKSHSLAMKSKMDRLKLELSR 298 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchH---------HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 567777777788888887777777777777776644432211 11122334444555666667777777777
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 014127 259 LEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLD 320 (430)
Q Consensus 259 lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~ 320 (430)
...||..+...|...+....++..+|.-|=+.|-.|+...+-|.+|+-+|+++||+....+.
T Consensus 299 k~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~ 360 (775)
T PF10174_consen 299 KKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLE 360 (775)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 77777777777776666667777888888888888888888888888888888887655443
No 16
>PRK02224 chromosome segregation protein; Provisional
Probab=96.67 E-value=1.6 Score=49.11 Aligned_cols=51 Identities=24% Similarity=0.312 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 014127 165 KLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 215 (430)
Q Consensus 165 ~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~ 215 (430)
.++.....+...|..++..++.-..++..+...+..++...+.|...+...
T Consensus 255 ~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~ 305 (880)
T PRK02224 255 TLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLD 305 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 334444444444444544444444555555555555555555555554443
No 17
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.65 E-value=0.15 Score=58.85 Aligned_cols=157 Identities=23% Similarity=0.288 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchh----hHHHhhhhhhHHH--
Q 014127 162 LLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYL----KRLAASKGVEFER-- 235 (430)
Q Consensus 162 REa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a----~q~~a~~~~EaE~-- 235 (430)
-.-.|+.+.|++.+=|-.++..++++....-.+++.+..|+.+++.|+|++.+..-...++ ..+.+ ....+|+
T Consensus 171 ~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdelda-lre~aer~d 249 (1195)
T KOG4643|consen 171 KNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDA-LREQAERPD 249 (1195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH-HHHhhhcCC
Confidence 3456899999999999999999999999999999999999999999999988774332222 33322 2222221
Q ss_pred ----HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 236 ----EILEAEYTFIADKIIQLED-------KAKKLEGNIEMTRKEIEDPT--EVEIELKRRLGQLTDHLIQKQAQVEALS 302 (430)
Q Consensus 236 ----e~l~qE~~~l~~el~~lq~-------klk~lE~EIq~Lr~~ls~pS--~~e~ELE~RL~~LTe~LIqKQtqLEsLs 302 (430)
+.+ -++.|..+.++.++. .-.-|+.+|+.+|.+-...| +..+.|.+.|+.|-...---|+++|.|.
T Consensus 250 ~~ykerl-mDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~ 328 (1195)
T KOG4643|consen 250 TTYKERL-MDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELH 328 (1195)
T ss_pred Cccchhh-hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 111 123344444444433 34557888888888876555 4688999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 014127 303 SEKATLAFRIEAVSRLLD 320 (430)
Q Consensus 303 sEk~AL~lqLERle~~~~ 320 (430)
-|+.+|..+=+.+...+.
T Consensus 329 eEnstLq~q~eqL~~~~e 346 (1195)
T KOG4643|consen 329 EENSTLQVQKEQLDGQME 346 (1195)
T ss_pred HHHHHHHHHHHHhhhhhh
Confidence 999999999888765554
No 18
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.64 E-value=1.1 Score=52.96 Aligned_cols=198 Identities=22% Similarity=0.253 Sum_probs=100.9
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh----------hHHHHHHHHHHHHHHHHH
Q 014127 103 ENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNN----------TRMEALQLLAKLETANAD 172 (430)
Q Consensus 103 e~~~arl~~ek~~l~k~l~e~~~~q~~ea~el~~~m~e~~~A~elE~~aH~a----------TR~qA~aREa~LE~enae 172 (430)
+.+..|-.+-+.-.+.|+.+..+-- ++|..++.+|-..-+|+++--++... .-+.++..+.+.+++-+.
T Consensus 1531 d~IL~~T~~di~ra~~L~s~A~~a~-~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~ 1609 (1758)
T KOG0994|consen 1531 DAILSRTKGDIARAENLQSEAERAR-SRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAA 1609 (1758)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777776654443 37777777666666665543333322 123344455555555544
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHH---hhhhhhHH-----HHHHHHHHHH
Q 014127 173 LARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLA---ASKGVEFE-----REILEAEYTF 244 (430)
Q Consensus 173 ~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~---a~~~~EaE-----~e~l~qE~~~ 244 (430)
.++.+..+ +.++.+|+-+++.+.+... |-+.+++++. .+....+. .+.+ |++-.
T Consensus 1610 aE~~~~~a-------~q~~~eL~~~~e~lk~~~~----------qns~~A~~a~~~a~sa~~~A~~a~q~~~~l-q~~~~ 1671 (1758)
T KOG0994|consen 1610 AEKLATSA-------TQQLGELETRMEELKHKAA----------QNSAEAKQAEKTAGSAKEQALSAEQGLEIL-QKYYE 1671 (1758)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHH----------hccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 44444333 3445555555544444332 1111222211 11111111 1211 22222
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 014127 245 IADKIIQLEDK-AKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLL 319 (430)
Q Consensus 245 l~~el~~lq~k-lk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~ 319 (430)
+.+.|...+.. .....+..++|+...+.-.....+-=.+|+.|.-....++.+||...+|..-|+-+++.+-.-.
T Consensus 1672 ~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1672 LVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 22222100000 0112233445554443333334455568888888899999999999999999999999965533
No 19
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.34 E-value=0.12 Score=56.43 Aligned_cols=126 Identities=20% Similarity=0.275 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhccccc--chh--h-HHHhhhhhhHHHHHHHHHHHH
Q 014127 170 NADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTG--IYL--K-RLAASKGVEFEREILEAEYTF 244 (430)
Q Consensus 170 nae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~--~~a--~-q~~a~~~~EaE~e~l~qE~~~ 244 (430)
.+-|..-|+.+.+-+++-..+.+.|+.++..+..+...|+.++.++.+.. .+. . ........++|...++..+..
T Consensus 87 k~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~ 166 (546)
T KOG0977|consen 87 KAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKA 166 (546)
T ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 34578889999999999999999999999999999999999999996643 222 1 222456778888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHH
Q 014127 245 IADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQ 295 (430)
Q Consensus 245 l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQ 295 (430)
+.+++.+++.+...+..+|+.+|+++..-+....+++++...|.+-|--++
T Consensus 167 le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 167 LEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999998888778899999999988886655
No 20
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=1.8 Score=46.68 Aligned_cols=172 Identities=18% Similarity=0.184 Sum_probs=127.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHhHHHHHHHHHHHHHHhhhhcccccch
Q 014127 145 FELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEME---TNQVAELRQQTELKEVAHEELSQRNSNTHQTGIY 221 (430)
Q Consensus 145 ~elE~~aH~aTR~qA~aREa~LE~enae~akALA~~Qr~lee~---~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~ 221 (430)
+..+.+.|-..=.++..+...++..|.++.+.+---.|-++.- ..=++.|..+++.+.-....|.++.++-.++...
T Consensus 246 l~ae~kqh~v~~~ales~~sq~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~ 325 (521)
T KOG1937|consen 246 LQAEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQ 325 (521)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3446677888888889999999999999999888777777664 3567778888888888888888888887665311
Q ss_pred h----hHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C-ChhHHHHHHHHHHHHHHHHHHH
Q 014127 222 L----KRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED-P-TEVEIELKRRLGQLTDHLIQKQ 295 (430)
Q Consensus 222 a----~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~-p-S~~e~ELE~RL~~LTe~LIqKQ 295 (430)
- ....-..+.+.++ -.++..+++++..+-.++.+.+..-..|++.++. | ...-..+..||+.++-. |.||
T Consensus 326 kkl~Lr~~l~~~e~e~~e---~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gn-iRKq 401 (521)
T KOG1937|consen 326 KKLQLREELKNLETEDEE---IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGN-IRKQ 401 (521)
T ss_pred HHHHHHHHHhcccchHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhH-HHHH
Confidence 1 1122234444443 2345567778777888888888888889888866 3 34588999999999876 5666
Q ss_pred -HHHHHHHhhHHHHHHHHHHHHHHHH
Q 014127 296 -AQVEALSSEKATLAFRIEAVSRLLD 320 (430)
Q Consensus 296 -tqLEsLssEk~AL~lqLERle~~~~ 320 (430)
+-|=.+..|...|+.|+..+...+.
T Consensus 402 ~~DI~Kil~etreLqkq~ns~se~L~ 427 (521)
T KOG1937|consen 402 EQDIVKILEETRELQKQENSESEALN 427 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4588999999999999999876543
No 21
>PRK02224 chromosome segregation protein; Provisional
Probab=96.01 E-value=3.7 Score=46.35 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=15.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 149 KQRHNNTRMEALQLLAKLETANADLARALAAAQK 182 (430)
Q Consensus 149 ~~aH~aTR~qA~aREa~LE~enae~akALA~~Qr 182 (430)
+..+......+..+...|+.+..++...+....+
T Consensus 525 ~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~ 558 (880)
T PRK02224 525 IAERRETIEEKRERAEELRERAAELEAEAEEKRE 558 (880)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555555444433333
No 22
>PRK11637 AmiB activator; Provisional
Probab=95.85 E-value=2.9 Score=43.78 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 014127 287 LTDHLIQKQAQVEALSSEKATLAFRIEA 314 (430)
Q Consensus 287 LTe~LIqKQtqLEsLssEk~AL~lqLER 314 (430)
|-..+-..++++..|..+...|.-.|++
T Consensus 224 L~~~~~~~~~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 224 LESSLQKDQQQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444443
No 23
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.65 E-value=7.9 Score=47.34 Aligned_cols=81 Identities=5% Similarity=0.012 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 014127 241 EYTFIADKIIQLEDKAKKLEGNIEMTRKE---IEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 317 (430)
Q Consensus 241 E~~~l~~el~~lq~klk~lE~EIq~Lr~~---ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~ 317 (430)
++..+...+..++.++...++.|+.+... ..-|.-+..+|+..+....+.+-+++.++..+..+.+.+.-.++.+..
T Consensus 398 qLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~ 477 (1486)
T PRK04863 398 QLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQ 477 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666666666665552 233544566899999999999999999999999999988888888776
Q ss_pred HHHh
Q 014127 318 LLDE 321 (430)
Q Consensus 318 ~~~e 321 (430)
.+..
T Consensus 478 ~~~~ 481 (1486)
T PRK04863 478 AYQL 481 (1486)
T ss_pred HHHH
Confidence 5554
No 24
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.62 E-value=6.7 Score=46.38 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=17.0
Q ss_pred HhHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q 014127 95 AGDAIKERENMVARLEGEKQSLEKILEERA 124 (430)
Q Consensus 95 ~~~~i~ere~~~arl~~ek~~l~k~l~e~~ 124 (430)
--..+.|-+.-+.+|+.++...++.+.=.+
T Consensus 191 ~~~~~~el~~~l~~L~~q~~~a~~y~~l~~ 220 (1163)
T COG1196 191 LEDLLEELEKQLEKLERQAEKAERYQELKA 220 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666555444333
No 25
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.03 E-value=11 Score=45.46 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 014127 277 EIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 315 (430)
Q Consensus 277 e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERl 315 (430)
..++..+|.++-..|-.-+..+..+..+..++.-.+.++
T Consensus 923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a 961 (1353)
T TIGR02680 923 VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRA 961 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555444
No 26
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.99 E-value=7.2 Score=43.03 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 014127 236 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 272 (430)
Q Consensus 236 e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~ 272 (430)
..+.+|...+.++|+.+++.+..-++++..|+..++.
T Consensus 279 ~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~ 315 (546)
T PF07888_consen 279 QQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSD 315 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666666643
No 27
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.84 E-value=2.7 Score=40.36 Aligned_cols=135 Identities=19% Similarity=0.262 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHH-------H-hhhhhhHHHH
Q 014127 165 KLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRL-------A-ASKGVEFERE 236 (430)
Q Consensus 165 ~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~-------~-a~~~~EaE~e 236 (430)
.|..+.++.-+=.....+.+.+-..+...|.+-+...+.+...|+.++..-......+..+ . ..+..+-|.+
T Consensus 31 sLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~e 110 (201)
T PF13851_consen 31 SLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHE 110 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444445555555555554443322221110 0 1244444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 014127 237 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTE-VEIELKRRLGQLTDHLIQKQAQVEALSSEKA 306 (430)
Q Consensus 237 ~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~-~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~ 306 (430)
++.+.|..++.+...|..+-...=.+|+ +.+. -..-||++|..|++.|=.|++||..+.+--+
T Consensus 111 vL~qr~~kle~ErdeL~~kf~~~i~evq-------Qk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~n 174 (201)
T PF13851_consen 111 VLEQRFEKLEQERDELYRKFESAIQEVQ-------QKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAAN 174 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5655555555554444444332222222 2232 3678999999999999999999998876544
No 28
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.66 E-value=6.5 Score=45.76 Aligned_cols=149 Identities=21% Similarity=0.259 Sum_probs=95.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHh-----HHHHHHH
Q 014127 122 ERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARAL--AAAQKKLEME-----TNQVAEL 194 (430)
Q Consensus 122 e~~~~q~~ea~el~~~m~e~~~A~elE~~aH~aTR~qA~aREa~LE~enae~akAL--A~~Qr~lee~-----~~rvaeL 194 (430)
++-+-|-...+|..+-||+....+.-|+++-.-...+|++=..++..+.++.+-++ +++-+..-++ +..+..+
T Consensus 258 ekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~l 337 (1243)
T KOG0971|consen 258 EKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEAL 337 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 45566666778888889988888888888888888888888888888888887775 4444444443 3456677
Q ss_pred HhHHHHHHHHHHHHHHhhhhcccccc--hh---hHHH-----------hhhhh-----------hHHHHHHHHHHHHHHH
Q 014127 195 RQQTELKEVAHEELSQRNSNTHQTGI--YL---KRLA-----------ASKGV-----------EFEREILEAEYTFIAD 247 (430)
Q Consensus 195 eqkv~~lE~~~~sLrqrl~~~~q~~~--~a---~q~~-----------a~~~~-----------EaE~e~l~qE~~~l~~ 247 (430)
.+++..|+..++=|+.++++-+..+. +. +|+. -.++. -.|.+..+.|+..+..
T Consensus 338 kEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r 417 (1243)
T KOG0971|consen 338 KERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRR 417 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 77888888888888888777744321 11 1211 01111 1122445555555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 014127 248 KIIQLEDKAKKLEGNIEMTRKEI 270 (430)
Q Consensus 248 el~~lq~klk~lE~EIq~Lr~~l 270 (430)
.-++|+.++..+|..|..|+.++
T Consensus 418 ~kE~Lsr~~d~aEs~iadlkEQV 440 (1243)
T KOG0971|consen 418 QKERLSRELDQAESTIADLKEQV 440 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666777777666654
No 29
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=94.63 E-value=13 Score=44.28 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 014127 284 LGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLD 320 (430)
Q Consensus 284 L~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~ 320 (430)
=+.|++.|++=-..+..+..+.....-+++++.+..+
T Consensus 267 N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~ 303 (1109)
T PRK10929 267 NRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALN 303 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888777888888888888888888765444
No 30
>PRK09039 hypothetical protein; Validated
Probab=94.44 E-value=6.9 Score=40.41 Aligned_cols=131 Identities=15% Similarity=0.078 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcc---cccchhhHHHhhhhhhHHHHHHHHHHH
Q 014127 167 ETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH---QTGIYLKRLAASKGVEFEREILEAEYT 243 (430)
Q Consensus 167 E~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~---q~~~~a~q~~a~~~~EaE~e~l~qE~~ 243 (430)
+.+...+..-|+.+=-.+..+..+...|++.+..+......++.+-.... +.+.. .....+.-...+..++.
T Consensus 52 ~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~-----~~~~~~~~~~~l~~~L~ 126 (343)
T PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAG-----AGAAAEGRAGELAQELD 126 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----hcchHHHHHHHHHHHHH
Confidence 33333444444444444455555555666666555554443333222111 11100 00011111233344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 014127 244 FIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLA 309 (430)
Q Consensus 244 ~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~ 309 (430)
.........+-++..+.++|+.||.+ -..|+..|..+-...-.+|.+++.|..+.+..-
T Consensus 127 ~~k~~~se~~~~V~~L~~qI~aLr~Q-------la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 127 SEKQVSARALAQVELLNQQIAALRRQ-------LAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666677777777777777 335666666666667778888888877777664
No 31
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.38 E-value=15 Score=44.01 Aligned_cols=61 Identities=11% Similarity=0.202 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 014127 253 EDKAKKLEGNIEMTRKEIEDP-----TEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIE 313 (430)
Q Consensus 253 q~klk~lE~EIq~Lr~~ls~p-----S~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLE 313 (430)
+.++..++.+|..|..++.+- ...-.+|..++..|+-.--..+.++-.+..+...|..+|+
T Consensus 1027 ~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~ 1092 (1311)
T TIGR00606 1027 ENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELR 1092 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 555566666666666655432 1245666777777777767777777777777777777773
No 32
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.23 E-value=11 Score=41.71 Aligned_cols=70 Identities=21% Similarity=0.261 Sum_probs=39.1
Q ss_pred HhHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 014127 107 ARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARAL 177 (430)
Q Consensus 107 arl~~ek~~l~k~l~e~~~~q~~ea~el~~~m~e~~~A~elE~~aH~aTR~qA~aREa~LE~enae~akAL 177 (430)
..|..+...|+..|....+...+ -..-...+....+.+..|+..=.....++..|..+|+..+..+..-.
T Consensus 167 ~~l~~~v~~l~~eL~~~~ee~e~-L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 167 EQLREEVERLEAELEQEEEEMEQ-LKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666556555444432 22223455555666666665555555666677777777766654444
No 33
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.21 E-value=9.7 Score=43.14 Aligned_cols=117 Identities=17% Similarity=0.212 Sum_probs=52.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhh--------H
Q 014127 153 NNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLK--------R 224 (430)
Q Consensus 153 ~aTR~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~--------q 224 (430)
.+.-..+-.=+..|+.+|..+..-|..+-+..+.+..-+..|+.++......-.++-.+|.+-.+.+.... +
T Consensus 452 ~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~ 531 (697)
T PF09726_consen 452 TNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQ 531 (697)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhcccc
Confidence 33333444444555555555555555555555555544555555544433333333333333322110000 0
Q ss_pred HHhhhhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 225 LAASKGVEFE-----REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE 269 (430)
Q Consensus 225 ~~a~~~~EaE-----~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ 269 (430)
....+..-+| +.-+..|+..|..+|...++.+..+|.+++.||+.
T Consensus 532 ~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 532 AQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred chhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011122222 13344455555566666666666666666666654
No 34
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.92 E-value=5.1 Score=47.09 Aligned_cols=210 Identities=17% Similarity=0.191 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH---HHHHHHHHHHH
Q 014127 98 AIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLL---AKLETANADLA 174 (430)
Q Consensus 98 ~i~ere~~~arl~~ek~~l~k~l~e~~~~q~~ea~el~~~m~e~~~A~elE~~aH~aTR~qA~aRE---a~LE~enae~a 174 (430)
.+.+=-+.+.-++++...++|-+++-++.=. ....+ .+|.+.+..+ .+--+|. .....+ -.+++.+.-..
T Consensus 222 ~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~-~~~~~-e~~~~~l~~L----k~k~~W~-~V~~~~~ql~~~~~~i~~~q 294 (1074)
T KOG0250|consen 222 SLDHAKELIDLKEEEIKNLKKKIKEEEEKLD-NLEQL-EDLKENLEQL----KAKMAWA-WVNEVERQLNNQEEEIKKKQ 294 (1074)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3344445566677777777777665444322 22222 2233333332 2222221 111122 23344555555
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 014127 175 RALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLED 254 (430)
Q Consensus 175 kALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~ 254 (430)
-.++.|+.+++.+..++..+++++...+.....++....-+..+...+.+..... .-|..-++.+|...|..++.++.
T Consensus 295 ek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~--~re~~~~~~~~~~~~n~i~~~k~ 372 (1074)
T KOG0250|consen 295 EKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDL--RREVNDLKEEIREIENSIRKLKK 372 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777776666666666666666666555433332222222211111 11111233344444555555555
Q ss_pred HHHHHHHHHHHHHHHhCCC-ChhH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 014127 255 KAKKLEGNIEMTRKEIEDP-TEVE---------------------IELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRI 312 (430)
Q Consensus 255 klk~lE~EIq~Lr~~ls~p-S~~e---------------------~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqL 312 (430)
.+..++..|..++++..+. ++.. ..|..-+..+.+-+-..|...+.+.+++..+.-.+
T Consensus 373 ~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i 452 (1074)
T KOG0250|consen 373 EVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKI 452 (1074)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544221 1223 33444444444455555555555555555555555
Q ss_pred HHHH
Q 014127 313 EAVS 316 (430)
Q Consensus 313 ERle 316 (430)
+-.+
T Consensus 453 ~~~~ 456 (1074)
T KOG0250|consen 453 ENIS 456 (1074)
T ss_pred HHHH
Confidence 5443
No 35
>PRK09039 hypothetical protein; Validated
Probab=93.86 E-value=7.8 Score=40.02 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 014127 97 DAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARA 176 (430)
Q Consensus 97 ~~i~ere~~~arl~~ek~~l~k~l~e~~~~q~~ea~el~~~m~e~~~A~elE~~aH~aTR~qA~aREa~LE~enae~akA 176 (430)
..|..++.-+++|+.+-..|-.+|.=+..... ..++-=..+-..+++++.++..=.........-...++.+.+.+.++
T Consensus 46 ~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~-~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~ 124 (343)
T PRK09039 46 REISGKDSALDRLNSQIAELADLLSLERQGNQ-DLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQE 124 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHH
Confidence 45666777777777777666666655444333 12111122222222222222211111111111123455555555566
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 014127 177 LAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 216 (430)
Q Consensus 177 LA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~ 216 (430)
|+.......+...++..|.++++.+...+..|...|..++
T Consensus 125 L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666655555555544443
No 36
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.81 E-value=13 Score=41.30 Aligned_cols=193 Identities=19% Similarity=0.223 Sum_probs=107.7
Q ss_pred HHhHHHHHHHHHHHH---HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Q 014127 125 KQQVKEASELQTSMM---ETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELK 201 (430)
Q Consensus 125 ~~q~~ea~el~~~m~---e~~~A~elE~~aH~aTR~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~l 201 (430)
..+.+|-.+|+.-.- ..++.++.+.....+...++.....+.+.++.++++.+.--.+-.+. +...+..++.|
T Consensus 324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~l----L~d~e~ni~kL 399 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVEL----LPDAEENIAKL 399 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCcHHHHHHH
Confidence 344456667765433 34455777888888888888888888888888887777644443322 11122333444
Q ss_pred HHHHHHHHHhhhhcccccchh-----hHHHhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 014127 202 EVAHEELSQRNSNTHQTGIYL-----KRLAAS----KGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 272 (430)
Q Consensus 202 E~~~~sLrqrl~~~~q~~~~a-----~q~~a~----~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~ 272 (430)
+..++.-.+++..+.+.+... ...... ..-+.|....-+++..+..++..+...++..++.+..|...+..
T Consensus 400 ~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~ 479 (594)
T PF05667_consen 400 QALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEK 479 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444443332111 011100 11112222223344444444445555555555555555554433
Q ss_pred -C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 014127 273 -P-TEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDE 321 (430)
Q Consensus 273 -p-S~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~e 321 (430)
| ..+-.-+=+||...+-.+=-=++.|+.+..+-..|+.++..++..++.
T Consensus 480 ~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~R 530 (594)
T PF05667_consen 480 LPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDR 530 (594)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 233556778999999886555578999999999888888887765543
No 37
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.55 E-value=21 Score=42.72 Aligned_cols=157 Identities=16% Similarity=0.171 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHH
Q 014127 155 TRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFE 234 (430)
Q Consensus 155 TR~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE 234 (430)
-+.+......+|+.+.+...-.|-.+++++..-..+......+...++...+..+..+++++-+...+++.......+++
T Consensus 385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~ 464 (1293)
T KOG0996|consen 385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD 464 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777788888888888888888888888777777777777777777777777777776655444333211111111
Q ss_pred ---------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 014127 235 ---------REILEAEYTFIADKIIQL-------EDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQV 298 (430)
Q Consensus 235 ---------~e~l~qE~~~l~~el~~l-------q~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqL 298 (430)
-+-++.|+..++++|..+ ..++.-.+.+...|......-+..-.+|..+|-.....+..+++.+
T Consensus 465 e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l 544 (1293)
T KOG0996|consen 465 EILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTEL 544 (1293)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333333444444333 3333334444444433322222234567777777777777777777
Q ss_pred HHHHhhHHHHHHH
Q 014127 299 EALSSEKATLAFR 311 (430)
Q Consensus 299 EsLssEk~AL~lq 311 (430)
..+..+...|...
T Consensus 545 ~~~k~~l~~~k~e 557 (1293)
T KOG0996|consen 545 DDLKEELPSLKQE 557 (1293)
T ss_pred HHHHHhhhhHHHH
Confidence 7766666554433
No 38
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.43 E-value=14 Score=42.02 Aligned_cols=164 Identities=16% Similarity=0.207 Sum_probs=98.4
Q ss_pred HHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccc
Q 014127 140 ETMDAFELE-KQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQT 218 (430)
Q Consensus 140 e~~~A~elE-~~aH~aTR~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~ 218 (430)
.+..-+-.| ...|...|.+.+.|...|...-..--+-|..|+..++.=+..+..|.++++.....++.|.+|++.+-+.
T Consensus 543 ~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~ 622 (717)
T PF10168_consen 543 QATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQL 622 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445 4667778888888888888888888888888888877777777778888888888888888888777442
Q ss_pred cchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---C-ChhHHHHHHHHHHHHHHHHHH
Q 014127 219 GIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED---P-TEVEIELKRRLGQLTDHLIQK 294 (430)
Q Consensus 219 ~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~---p-S~~e~ELE~RL~~LTe~LIqK 294 (430)
.... .--..++|++. +.|+..+.+++..++..++.+...++..+.++.. + +....=-+++.+.+++.|-+=
T Consensus 623 l~~~----~P~LS~AEr~~-~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~ 697 (717)
T PF10168_consen 623 LNSQ----LPVLSEAEREF-KKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQ 697 (717)
T ss_pred Hhcc----CCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHH
Confidence 1100 00122334322 2345555555655555555555555544444321 1 111111256666777766665
Q ss_pred HHHHHHHHhhHHHH
Q 014127 295 QAQVEALSSEKATL 308 (430)
Q Consensus 295 QtqLEsLssEk~AL 308 (430)
=.+|..+..+.+.+
T Consensus 698 ~~~I~~~v~~ik~i 711 (717)
T PF10168_consen 698 GEEIDELVKQIKNI 711 (717)
T ss_pred HHHHHHHHHHHHHH
Confidence 55566655555444
No 39
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.35 E-value=5 Score=41.24 Aligned_cols=146 Identities=15% Similarity=0.223 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhHHHH-------HHHHHHHHHHhhhhcccccchhhHH-HhhhhhhHHHHHHHHHHH
Q 014127 172 DLARALAAAQKKLEMETNQVAELRQQTEL-------KEVAHEELSQRNSNTHQTGIYLKRL-AASKGVEFEREILEAEYT 243 (430)
Q Consensus 172 e~akALA~~Qr~lee~~~rvaeLeqkv~~-------lE~~~~sLrqrl~~~~q~~~~a~q~-~a~~~~EaE~e~l~qE~~ 243 (430)
.+++.+..+...|..=+.+.+.|..+++. +|.+.++++-+|..+-+. ..+- .+.+..|.-..+.+.|.-
T Consensus 53 ~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d---~dqsq~skrdlelafqr~rdEw~ 129 (305)
T PF14915_consen 53 TLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQD---HDQSQTSKRDLELAFQRARDEWV 129 (305)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHhhHHHHHHHHHHHhhHHH
Confidence 46667777777777778888888888744 556666666666555322 0111 122333333333443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Q 014127 244 FIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENK 323 (430)
Q Consensus 244 ~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~e~~ 323 (430)
.++++ +...++.+....+.|..+++..-+--.-|+..||..+|.|-.|--.+|.+..+..--+.|+..+++-+++..
T Consensus 130 ~lqdk---mn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~ 206 (305)
T PF14915_consen 130 RLQDK---MNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQ 206 (305)
T ss_pred HHHHH---hcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 44443 222345667777888888876444567899999999999999999999999999999999999988777543
No 40
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.19 E-value=9.6 Score=37.71 Aligned_cols=105 Identities=25% Similarity=0.246 Sum_probs=51.0
Q ss_pred HHhHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------------HHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 014127 106 VARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDA--------------FELEKQRHNNTRMEALQLLAKLETANA 171 (430)
Q Consensus 106 ~arl~~ek~~l~k~l~e~~~~q~~ea~el~~~m~e~~~A--------------~elE~~aH~aTR~qA~aREa~LE~ena 171 (430)
|--||.+-..|+.-+...........+.+....-..+.+ ++++...=...-.+...+..+......
T Consensus 20 Vr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~ 99 (312)
T PF00038_consen 20 VRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERK 99 (312)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666665555554333333332222222222 222222222333333344444455555
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHH
Q 014127 172 DLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 210 (430)
Q Consensus 172 e~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrq 210 (430)
.+..-|..+...++..+.....|+.++..+..++.-++.
T Consensus 100 ~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~ 138 (312)
T PF00038_consen 100 DLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQ 138 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Confidence 566667777777777777777777777777766655554
No 41
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.97 E-value=3.7 Score=40.86 Aligned_cols=123 Identities=19% Similarity=0.259 Sum_probs=59.2
Q ss_pred HHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 183 KLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGN 262 (430)
Q Consensus 183 ~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~E 262 (430)
.+......+..++.++...+...++++.++...+................-|....+.....+.++|..+.+.+..++.+
T Consensus 46 ~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~ 125 (239)
T COG1579 46 ALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKE 125 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555666666666666666666665543321112222223334444445555555556666666666666666
Q ss_pred HHHHHHHhCC--CC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 014127 263 IEMTRKEIED--PT--EVEIELKRRLGQLTDHLIQKQAQVEALSSEK 305 (430)
Q Consensus 263 Iq~Lr~~ls~--pS--~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk 305 (430)
|..++..+.. +. .....++..+..+=+....=..+.+.|.++.
T Consensus 126 i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l 172 (239)
T COG1579 126 IEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKL 172 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6655555433 11 1244444444444444443344444444443
No 42
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=92.72 E-value=26 Score=41.52 Aligned_cols=44 Identities=20% Similarity=0.313 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 014127 173 LARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 216 (430)
Q Consensus 173 ~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~ 216 (430)
..+.|-.+.-.+--...+++.+.++++.......++++++...+
T Consensus 279 ~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teie 322 (1074)
T KOG0250|consen 279 VERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIE 322 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 33344444444444444444454555444444444444444443
No 43
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.59 E-value=13 Score=37.61 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=11.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Q 014127 297 QVEALSSEKATLAFRIEAVSRLL 319 (430)
Q Consensus 297 qLEsLssEk~AL~lqLERle~~~ 319 (430)
.+..+..+...+..+++.++..+
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555433
No 44
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.58 E-value=29 Score=41.71 Aligned_cols=114 Identities=11% Similarity=0.104 Sum_probs=57.7
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 99 IKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALA 178 (430)
Q Consensus 99 i~ere~~~arl~~ek~~l~k~l~e~~~~q~~ea~el~~~m~e~~~A~elE~~aH~aTR~qA~aREa~LE~enae~akALA 178 (430)
+......+.|+..+-..+++-+++-...+. ... . ..++..++.+..+..............+..+...+.+.|.
T Consensus 787 L~~~v~~i~r~~~ei~~l~~qie~l~~~l~-~~~---~--~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~ 860 (1311)
T TIGR00606 787 CLTDVTIMERFQMELKDVERKIAQQAAKLQ-GSD---L--DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQ 860 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccc---c--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444456666666666666665544333 111 0 1255666666666666666665555555555555555555
Q ss_pred HHHHHHHH----------hHHHHHHHHhHHHHHHHHHHHHHHhhhhcccc
Q 014127 179 AAQKKLEM----------ETNQVAELRQQTELKEVAHEELSQRNSNTHQT 218 (430)
Q Consensus 179 ~~Qr~lee----------~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~ 218 (430)
.+|.++.. ...+...|+..+..+...+..+...+..+...
T Consensus 861 ~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~ 910 (1311)
T TIGR00606 861 HLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQ 910 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55333222 22233444444444555555555544444333
No 45
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=92.56 E-value=27 Score=41.31 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--------------HHHHHHHHHHHHH
Q 014127 256 AKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEK--------------ATLAFRIEAVSRL 318 (430)
Q Consensus 256 lk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk--------------~AL~lqLERle~~ 318 (430)
...+-+..+.|+..+.+.-.....|-++|+.|..+ -+|+++||.-..++ ++++++.|.++-.
T Consensus 525 ye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t-~qn~~~LEq~~n~lE~~~~elkk~idaL~alrrhke~LE~e 600 (1195)
T KOG4643|consen 525 YELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT-SQNGALLEQNNNDLELIHNELKKYIDALNALRRHKEKLEEE 600 (1195)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555444566788888888888 88888888766553 5677777776654
No 46
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=91.98 E-value=34 Score=41.17 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 014127 286 QLTDHLIQKQAQVEALSSEKATLAFRIE 313 (430)
Q Consensus 286 ~LTe~LIqKQtqLEsLssEk~AL~lqLE 313 (430)
.+.-.|-.+|..++.+.+|.+.++++..
T Consensus 671 ~~e~~lk~~q~~~eq~~~E~~~~~L~~~ 698 (1317)
T KOG0612|consen 671 KLERKLKMLQNELEQENAEHHRLRLQDK 698 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3455666778888888888888854444
No 47
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=91.80 E-value=29 Score=39.96 Aligned_cols=112 Identities=23% Similarity=0.282 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHH----HHHHH--hHHHHHHHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 014127 97 DAIKERENMVARLEGEKQSLEKILE----ERAKQ--QVKEASELQTS-MMETMDAFELEKQRHNNTRMEALQLLAKLETA 169 (430)
Q Consensus 97 ~~i~ere~~~arl~~ek~~l~k~l~----e~~~~--q~~ea~el~~~-m~e~~~A~elE~~aH~aTR~qA~aREa~LE~e 169 (430)
..|+.=|.++..|+.|-..|.-=+. +|... |. |+...++. |..-|..+..|+..-..-.+..+.+.-++...
T Consensus 238 ~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~l-e~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~ 316 (775)
T PF10174_consen 238 TKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQL-EVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQ 316 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455556666667777766643211 22222 22 33333333 33457778888888888888888888888887
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Q 014127 170 NADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 209 (430)
Q Consensus 170 nae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLr 209 (430)
+.++=..|..++=.+.-...+...|...|..+...++.-.
T Consensus 317 ~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~ 356 (775)
T PF10174_consen 317 DSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKN 356 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 7777666666666655555555555555544444444333
No 48
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.09 E-value=43 Score=40.53 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHH
Q 014127 237 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQK 294 (430)
Q Consensus 237 ~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqK 294 (430)
.+++|...|..+-.+.-+.|+.|+-+...-.+.|..+...-..|++|++++++.+-+|
T Consensus 1693 ~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1693 QLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 3555555444433333333444444333333444444444567788888777765443
No 49
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.08 E-value=42 Score=40.40 Aligned_cols=82 Identities=18% Similarity=0.293 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 014127 234 EREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIE 313 (430)
Q Consensus 234 E~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLE 313 (430)
|..+.+-|+..|.........++..+...+..++......--.-..++.-|.++-+-+.++-+.++.+..+-..+.-+|-
T Consensus 501 e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~ 580 (1293)
T KOG0996|consen 501 ELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLN 580 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33444444444444333344444444444443333332211123344444555555555555555555555554444444
Q ss_pred HH
Q 014127 314 AV 315 (430)
Q Consensus 314 Rl 315 (430)
++
T Consensus 581 ~~ 582 (1293)
T KOG0996|consen 581 KL 582 (1293)
T ss_pred HH
Confidence 43
No 50
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=90.69 E-value=40 Score=39.46 Aligned_cols=109 Identities=20% Similarity=0.187 Sum_probs=58.4
Q ss_pred HHHHHHHHh----HHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 014127 100 KERENMVAR----LEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLAR 175 (430)
Q Consensus 100 ~ere~~~ar----l~~ek~~l~k~l~e~~~~q~~ea~el~~~m~e~~~A~elE~~aH~aTR~qA~aREa~LE~enae~ak 175 (430)
..|+...-+ +++.+..++++..+....= ...+.- +.+++-+.+--.--..++.+-...|.++-+.+-+
T Consensus 329 d~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~----~q~~~q----l~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a 400 (980)
T KOG0980|consen 329 DPRELQIEQLSREVAQLKAQLENLKEEARRRI----EQYENQ----LLALEGELQEQQREAQENREEQEQLRNELAQLLA 400 (980)
T ss_pred ChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHH----HHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556555444 4555555565554433221 122222 2233333333333344555555577777777777
Q ss_pred HHHHHHHHH---HHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 014127 176 ALAAAQKKL---EMETNQVAELRQQTELKEVAHEELSQRNSNTH 216 (430)
Q Consensus 176 ALA~~Qr~l---ee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~ 216 (430)
.=..+++.. ++.-+++...+.+...+......|++...++-
T Consensus 401 ~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL 444 (980)
T KOG0980|consen 401 SRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLL 444 (980)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666655 66666666666666666666666666655553
No 51
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=90.32 E-value=17 Score=40.64 Aligned_cols=33 Identities=12% Similarity=0.244 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Q 014127 166 LETANADLARALAAAQKKLEMETNQVAELRQQT 198 (430)
Q Consensus 166 LE~enae~akALA~~Qr~lee~~~rvaeLeqkv 198 (430)
++..+..++--+.......+.-+.++-.|+..+
T Consensus 27 ~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL 59 (617)
T PF15070_consen 27 WQQRMQQMSEEVRTLKEEKEHDISRVQELERSL 59 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444333
No 52
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=90.03 E-value=19 Score=39.62 Aligned_cols=56 Identities=25% Similarity=0.368 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 014127 251 QLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLA 309 (430)
Q Consensus 251 ~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~ 309 (430)
.+..+++...+.|.+|..+++. ....+|.+|..|||+|+.=..+|..-.-|+.+|.
T Consensus 459 ~l~eeL~~a~~~i~~LqDEL~T---Tr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 459 SLEEELKEANQNISRLQDELET---TRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555543 2557899999999999998888888888887775
No 53
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=90.02 E-value=20 Score=34.90 Aligned_cols=65 Identities=22% Similarity=0.227 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 014127 256 AKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLD 320 (430)
Q Consensus 256 lk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~ 320 (430)
+..++.+++.....+...-.-..+|+.+|+.++..|-.=+..-+........+.-++..|+..+.
T Consensus 122 l~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lk 186 (237)
T PF00261_consen 122 LKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLK 186 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33444444444333333222355677777777777766665555555555555555555544443
No 54
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.93 E-value=40 Score=38.36 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Q 014127 248 KIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDEN 322 (430)
Q Consensus 248 el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~e~ 322 (430)
+.+.|-..|..|.++-+.|...|+.-|.-..+|= -.|=.=.-|||-+.........+++.|+..+-+.
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLf-------saLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLENSLSAETRIKLDLF-------SALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666667777777777666553333331 1222223344444444444555555555444433
No 55
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=89.80 E-value=23 Score=35.36 Aligned_cols=105 Identities=24% Similarity=0.213 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHH
Q 014127 166 LETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFI 245 (430)
Q Consensus 166 LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l 245 (430)
|++.....-++|..++-.++.-...+..++..++.++.....+..+|+++..+...+.....+.-.+-|..-|..|+..+
T Consensus 22 l~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~a 101 (239)
T COG1579 22 LEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIA 101 (239)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 44555566777888888888778888888888888888888888888888776655533323444444445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 014127 246 ADKIIQLEDKAKKLEGNIEMTRKEI 270 (430)
Q Consensus 246 ~~el~~lq~klk~lE~EIq~Lr~~l 270 (430)
.+++..|..++..+..+++.++..+
T Consensus 102 k~r~~~le~el~~l~~~~~~l~~~i 126 (239)
T COG1579 102 KERINSLEDELAELMEEIEKLEKEI 126 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555554443
No 56
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=88.75 E-value=44 Score=37.16 Aligned_cols=100 Identities=23% Similarity=0.252 Sum_probs=52.8
Q ss_pred HHhHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 106 VARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLE 185 (430)
Q Consensus 106 ~arl~~ek~~l~k~l~e~~~~q~~ea~el~~~m~e~~~A~elE~~aH~aTR~qA~aREa~LE~enae~akALA~~Qr~le 185 (430)
+.+|..|-..|.+-+++..+.-. .+.+=-..-...+..++.|.+==.........=...|..+|.-+-..|+.+...++
T Consensus 115 i~kl~~e~~elr~~~~~~~k~~~-~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 115 ITKLREELKELRKKLEKAEKERR-GAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLD 193 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHh-hhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45555555555555555433322 22222222233344455554444444444444556677788888888888888888
Q ss_pred HhHHHHHHHHhHHHHHHHHHH
Q 014127 186 METNQVAELRQQTELKEVAHE 206 (430)
Q Consensus 186 e~~~rvaeLeqkv~~lE~~~~ 206 (430)
.++.---.++-++..|..+++
T Consensus 194 ~Etllr~d~~n~~q~Lleel~ 214 (546)
T KOG0977|consen 194 DETLLRVDLQNRVQTLLEELA 214 (546)
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 877544444444444443333
No 57
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.33 E-value=4.6 Score=41.20 Aligned_cols=79 Identities=22% Similarity=0.304 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 014127 239 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 317 (430)
Q Consensus 239 ~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~ 317 (430)
++|-..+.++|..++.+-..++++|..++.+...-...+.++=..++.+.-.|++.+...+++........-+|+++++
T Consensus 56 e~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 56 EQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444444444444444443333233355666777788888888888899999888888888888875
No 58
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=88.29 E-value=18 Score=32.20 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 014127 279 ELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 315 (430)
Q Consensus 279 ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERl 315 (430)
..+.+=..|...+-.-+..++.|...+.-|.-|||.+
T Consensus 95 sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 95 SWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444445555666666777788888888888888764
No 59
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=88.28 E-value=42 Score=36.40 Aligned_cols=147 Identities=20% Similarity=0.173 Sum_probs=89.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHH
Q 014127 124 AKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEV 203 (430)
Q Consensus 124 ~~~q~~ea~el~~~m~e~~~A~elE~~aH~aTR~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~ 203 (430)
.+-|.+....|+.-+...=.|+.-+...+-..-..++.|.-+++.....++..+.++. ++.....+..++.+.+..+..
T Consensus 150 ~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e~~~~~L~~~~~A~~-~~~~~l~~~~e~~~~l~l~~~ 228 (511)
T PF09787_consen 150 SRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKEIERQELEERPKALR-HYIEYLRESGELQEQLELLKA 228 (511)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3444445567777777777777778888888888899999999999999998888444 555566666666666666555
Q ss_pred HHHHHHHhhhhcc-------ccc----chhhH-HH----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 204 AHEELSQRNSNTH-------QTG----IYLKR-LA----ASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTR 267 (430)
Q Consensus 204 ~~~sLrqrl~~~~-------q~~----~~a~q-~~----a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr 267 (430)
.....++.+..-. +.+ .+++. .. .....-.|.+-+++|...+.+++..++.++..+..+++.+.
T Consensus 229 ~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e 308 (511)
T PF09787_consen 229 EGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLE 308 (511)
T ss_pred HhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444443332 221 22211 00 00000134445666666677777766666666666666665
Q ss_pred HHhC
Q 014127 268 KEIE 271 (430)
Q Consensus 268 ~~ls 271 (430)
.++.
T Consensus 309 ~~~~ 312 (511)
T PF09787_consen 309 AQLE 312 (511)
T ss_pred HHHH
Confidence 5543
No 60
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=87.92 E-value=21 Score=32.57 Aligned_cols=22 Identities=18% Similarity=0.136 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014127 158 EALQLLAKLETANADLARALAA 179 (430)
Q Consensus 158 qA~aREa~LE~enae~akALA~ 179 (430)
.|+.|-..+++.+-.+.--...
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~ 32 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQ 32 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555544444433333
No 61
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=87.71 E-value=52 Score=36.82 Aligned_cols=136 Identities=21% Similarity=0.185 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 014127 171 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKII 250 (430)
Q Consensus 171 ae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~ 250 (430)
.+-...|+.++.-++....++..|..+++.....+..--+++........+ .....-.+...+++++..+..++.
T Consensus 390 ~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~-----e~~~~~~~ik~~r~~~k~~~~e~~ 464 (594)
T PF05667_consen 390 PDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRES-----ESKQKLQEIKELREEIKEIEEEIR 464 (594)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcch-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777888888888889999999987666665555555444332111 111111344556777888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC--CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 014127 251 QLEDKAKKLEGNIEMTRKEIED--PTEV----EIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 315 (430)
Q Consensus 251 ~lq~klk~lE~EIq~Lr~~ls~--pS~~----e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERl 315 (430)
.+++..+.+..+++.+-+.++. ||.- -+...++=..++--|- ..-.|..|.|.+.-+|+|-
T Consensus 465 ~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~----DTr~lQkeiN~l~gkL~Rt 531 (594)
T PF05667_consen 465 QKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILS----DTRELQKEINSLTGKLDRT 531 (594)
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999888754 4432 3333444333333332 1235667888888888884
No 62
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=87.68 E-value=27 Score=33.55 Aligned_cols=79 Identities=24% Similarity=0.310 Sum_probs=52.5
Q ss_pred hhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------C-ChhHHHHHHHHHHHHHHHH
Q 014127 221 YLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED-------P-TEVEIELKRRLGQLTDHLI 292 (430)
Q Consensus 221 ~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~-------p-S~~e~ELE~RL~~LTe~LI 292 (430)
..++++ .....|...++..+...++....++.+++..+.+|..++..+.+ . -+.-.+|..+|..++..|-
T Consensus 58 ~Lpqll--~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~ 135 (194)
T PF15619_consen 58 ELPQLL--QRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQ 135 (194)
T ss_pred hHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH
Confidence 335555 44556667777778877777777777777777777777765533 2 2346677778777777776
Q ss_pred HHHHHHHHH
Q 014127 293 QKQAQVEAL 301 (430)
Q Consensus 293 qKQtqLEsL 301 (430)
.+-..+..|
T Consensus 136 ~~~~ki~~L 144 (194)
T PF15619_consen 136 EKEKKIQEL 144 (194)
T ss_pred HHHHHHHHH
Confidence 665555443
No 63
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=87.56 E-value=45 Score=35.94 Aligned_cols=40 Identities=30% Similarity=0.331 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Q 014127 166 LETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAH 205 (430)
Q Consensus 166 LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~ 205 (430)
|+.++..+..+|...+..+..-...++.++..+..++...
T Consensus 71 ~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 71 LETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444433
No 64
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.48 E-value=38 Score=40.08 Aligned_cols=50 Identities=16% Similarity=0.267 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHH
Q 014127 155 TRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVA 204 (430)
Q Consensus 155 TR~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~ 204 (430)
||-+++.-.-+-+.+..++-..|..|.+.++....+++++...+...+..
T Consensus 665 srLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~ 714 (1200)
T KOG0964|consen 665 SRLELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVEND 714 (1200)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44444444555556667777777777777777777776666555544433
No 65
>PRK11281 hypothetical protein; Provisional
Probab=87.43 E-value=74 Score=38.26 Aligned_cols=37 Identities=11% Similarity=0.209 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 014127 284 LGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLD 320 (430)
Q Consensus 284 L~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~ 320 (430)
=+.|++.|++=-..++.+..+.....-+|+++.+..+
T Consensus 287 N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~ 323 (1113)
T PRK11281 287 NLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSER 323 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777788888888777777777655444
No 66
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=87.19 E-value=27 Score=34.56 Aligned_cols=47 Identities=28% Similarity=0.353 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHh
Q 014127 165 KLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 211 (430)
Q Consensus 165 ~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqr 211 (430)
+|+...-.+.--...++..|......+..|.++....+.+...|.++
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k 55 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQK 55 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555666666655555544444433
No 67
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.96 E-value=14 Score=35.92 Aligned_cols=27 Identities=15% Similarity=0.135 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 159 ALQLLAKLETANADLARALAAAQKKLE 185 (430)
Q Consensus 159 A~aREa~LE~enae~akALA~~Qr~le 185 (430)
+..|..+||.+.+++...|+.+....+
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 445666777777777777776665544
No 68
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.90 E-value=73 Score=37.70 Aligned_cols=43 Identities=12% Similarity=0.263 Sum_probs=29.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 014127 274 TEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 316 (430)
Q Consensus 274 S~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle 316 (430)
.....+|.+|++.-.+++|..+..|=.-.-=.+-|.-||..+.
T Consensus 503 ~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~ 545 (1243)
T KOG0971|consen 503 KGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELT 545 (1243)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345778888888888888888877666655555555555443
No 69
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=86.82 E-value=33 Score=33.61 Aligned_cols=47 Identities=21% Similarity=0.228 Sum_probs=37.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 014127 273 PTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLL 319 (430)
Q Consensus 273 pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~ 319 (430)
..+....++..|+.||+.|-.=-+-.|-...-.+.|....++++..+
T Consensus 135 ~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl 181 (205)
T KOG1003|consen 135 LEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKL 181 (205)
T ss_pred HhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhh
Confidence 34557889999999999998888888888877777777777776543
No 70
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=86.56 E-value=14 Score=35.29 Aligned_cols=105 Identities=19% Similarity=0.165 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH----------------HHHHHHHHHhhhhcccccchhhHHHh
Q 014127 164 AKLETANADLARALAAAQKKLEMETNQVAELRQQTELK----------------EVAHEELSQRNSNTHQTGIYLKRLAA 227 (430)
Q Consensus 164 a~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~l----------------E~~~~sLrqrl~~~~q~~~~a~q~~a 227 (430)
....++...+|-.++.+|.++..=..+|++|++++..- ...+++.-.+|..-+++..++.++++
T Consensus 5 ~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~ 84 (182)
T PF15035_consen 5 DAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNA 84 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34556666777778888888777777788877777321 12334444455555555555555554
Q ss_pred hhhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 228 SKGVEFER-----EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRK 268 (430)
Q Consensus 228 ~~~~EaE~-----e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~ 268 (430)
..+...|. +.|..++..++.++..+.+++...|.++..-..
T Consensus 85 lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~ 130 (182)
T PF15035_consen 85 LLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEE 130 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444442 334444444444444444444444444443333
No 71
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=85.75 E-value=17 Score=33.31 Aligned_cols=64 Identities=23% Similarity=0.414 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014127 235 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSS 303 (430)
Q Consensus 235 ~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLss 303 (430)
..-+..++..+++++..++..++.++.++..|. +.|| ..+|...+.+|...+-.-+..|+.|.+
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~---~~~t--~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLS---SEPT--NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566666666666666666666655443 4455 557888877777777666666666665
No 72
>PRK03918 chromosome segregation protein; Provisional
Probab=84.69 E-value=76 Score=35.88 Aligned_cols=32 Identities=34% Similarity=0.332 Sum_probs=16.5
Q ss_pred HHHHHhHHHHHHHHHHHhHHhhHHHHHHHHHH
Q 014127 91 AAAKAGDAIKERENMVARLEGEKQSLEKILEE 122 (430)
Q Consensus 91 ~~~~~~~~i~ere~~~arl~~ek~~l~k~l~e 122 (430)
+...+...+++-+.-+..|++....+..+.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~ 194 (880)
T PRK03918 163 AYKNLGEVIKEIKRRIERLEKFIKRTENIEEL 194 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555666665555555433
No 73
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=84.57 E-value=37 Score=32.19 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccc
Q 014127 164 AKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQT 218 (430)
Q Consensus 164 a~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~ 218 (430)
.-|+.-..++...|..++..+.........++.++...+.....|..+...+-..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~ 80 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAA 80 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566667777777777777777777777777777777777777777776666433
No 74
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=83.97 E-value=62 Score=34.25 Aligned_cols=24 Identities=13% Similarity=0.129 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Q 014127 293 QKQAQVEALSSEKATLAFRIEAVS 316 (430)
Q Consensus 293 qKQtqLEsLssEk~AL~lqLERle 316 (430)
.+|.++..|..+....+-.++.+-
T Consensus 352 ~~~~el~~L~Re~~~~~~~Y~~l~ 375 (498)
T TIGR03007 352 EVEAELTQLNRDYEVNKSNYEQLL 375 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544444433
No 75
>PRK04863 mukB cell division protein MukB; Provisional
Probab=83.71 E-value=1.2e+02 Score=37.53 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=11.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHh
Q 014127 298 VEALSSEKATLAFRIEAVSRLLDE 321 (430)
Q Consensus 298 LEsLssEk~AL~lqLERle~~~~e 321 (430)
++.+......++-+++.+...+.+
T Consensus 574 ~~~~~~~~~~~r~~~~qL~~~i~~ 597 (1486)
T PRK04863 574 VSEARERRMALRQQLEQLQARIQR 597 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555544443
No 76
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=83.60 E-value=83 Score=35.43 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHH
Q 014127 97 DAIKERENMVARLEGEKQSLEKIL 120 (430)
Q Consensus 97 ~~i~ere~~~arl~~ek~~l~k~l 120 (430)
-.-.|+...+.|...-..+|.+|-
T Consensus 40 ~L~eEk~~~~~~V~eLE~sL~eLk 63 (617)
T PF15070_consen 40 TLKEEKEHDISRVQELERSLSELK 63 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666676666666666643
No 77
>PRK11637 AmiB activator; Provisional
Probab=83.49 E-value=63 Score=33.96 Aligned_cols=14 Identities=21% Similarity=-0.192 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHhc
Q 014127 393 VCLHLWVIYILLSH 406 (430)
Q Consensus 393 v~LHlwV~~vL~~~ 406 (430)
++-|---|+.+|.|
T Consensus 364 ii~hg~g~~t~Y~~ 377 (428)
T PRK11637 364 VVEHGKGDMSLYGY 377 (428)
T ss_pred EEEeCCCcEEEccC
Confidence 34453333334443
No 78
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=83.08 E-value=35 Score=30.69 Aligned_cols=115 Identities=15% Similarity=0.197 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhccc
Q 014127 138 MMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ 217 (430)
Q Consensus 138 m~e~~~A~elE~~aH~aTR~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q 217 (430)
++.++-.+=..+.++...+.........|..++..+...+.+++..++....+++.+..+...++....++...+.
T Consensus 36 vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k---- 111 (151)
T PF11559_consen 36 VINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLK---- 111 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4555666777788888888888888899999888888888888777776666666665555555544443333211
Q ss_pred ccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 014127 218 TGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 271 (430)
Q Consensus 218 ~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls 271 (430)
...-|...++- .++..-....-.+++.+.||++|+..+.
T Consensus 112 ------------~~kee~~klk~---~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 112 ------------QEKEELQKLKN---QLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred ------------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11111111110 1111223455667778888888877654
No 79
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=82.97 E-value=31 Score=34.08 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 156 RMEALQLLAKLETANADLARALAAAQKKLEM 186 (430)
Q Consensus 156 R~qA~aREa~LE~enae~akALA~~Qr~lee 186 (430)
+.+...|+-+++.++...-.+|...+..+..
T Consensus 7 k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~ 37 (246)
T PF00769_consen 7 KQELEERLRQMEEEMRRAQEALEESEETAEE 37 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888888777766555
No 80
>PF14992 TMCO5: TMCO5 family
Probab=82.82 E-value=28 Score=35.55 Aligned_cols=102 Identities=18% Similarity=0.225 Sum_probs=53.5
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhccccc---chhhHHHh-----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 192 AELRQQTELKEVAHEELSQRNSNTHQTG---IYLKRLAA-----SKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNI 263 (430)
Q Consensus 192 aeLeqkv~~lE~~~~sLrqrl~~~~q~~---~~a~q~~a-----~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EI 263 (430)
-.|-+|+.++|-...+|-+++..+---. ...+.... ....|.|... |+.+..-+-..|
T Consensus 21 q~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~--------------LE~~ne~l~~~~ 86 (280)
T PF14992_consen 21 QSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAK--------------LEKENEHLSKSV 86 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHH--------------HhhhhHhhhhhh
Confidence 3477888889999999988888874321 11122211 1112222222 222222222222
Q ss_pred HHHHHHh---------CCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 014127 264 EMTRKEI---------EDPT--EVEIELKRRLGQLTDHLIQKQAQVEALSSEKAT 307 (430)
Q Consensus 264 q~Lr~~l---------s~pS--~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~A 307 (430)
+.+.+.. ..|+ ..-.+.+.++.+++...+..-.+++.+..+...
T Consensus 87 ~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~ 141 (280)
T PF14992_consen 87 QELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQ 141 (280)
T ss_pred hhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322 1221 224456688888888888888888887655443
No 81
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=81.95 E-value=84 Score=34.32 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--
Q 014127 196 QQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDP-- 273 (430)
Q Consensus 196 qkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~p-- 273 (430)
..+.....+++..+..|+++............+...|. +..+.++..+.++.......+..++.++..++..+...
T Consensus 281 ~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~EL--e~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~ 358 (522)
T PF05701_consen 281 SSLASAKKELEEAKKELEKAKEEASSLRASVESLRSEL--EKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKA 358 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHh
Confidence 33555555566666666655444444433333333333 34555666666666555555666666666666655221
Q ss_pred -----ChhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 014127 274 -----TEVEIELKRRLGQLTD--------------HLIQKQAQVEALSSEKATLAFRIEAVSRLL 319 (430)
Q Consensus 274 -----S~~e~ELE~RL~~LTe--------------~LIqKQtqLEsLssEk~AL~lqLERle~~~ 319 (430)
...-.+|-.-|++|+. -+-.=...+|...+...+.+.+|+-+..-.
T Consensus 359 ~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~ 423 (522)
T PF05701_consen 359 EEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEA 423 (522)
T ss_pred hhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123344444444443 233334556666666666777776654433
No 82
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=81.39 E-value=70 Score=33.03 Aligned_cols=103 Identities=17% Similarity=0.239 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--h----
Q 014127 202 EVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPT--E---- 275 (430)
Q Consensus 202 E~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS--~---- 275 (430)
-..++.++.++..|... |+. +...-+...+......|..++.++.++...|..+...+..+. .
T Consensus 54 A~~ld~~~~kl~~Ms~~-----ql~------~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~ 122 (301)
T PF06120_consen 54 ADSLDELKEKLKEMSST-----QLR------ANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYI 122 (301)
T ss_pred HHhhHHHHHHHHhcCHH-----HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHH
Confidence 44556777777777533 111 111112333444556666677777777777766666554431 1
Q ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 014127 276 -----VEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 315 (430)
Q Consensus 276 -----~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERl 315 (430)
...+.-.++..+|+.|-..|.+++.+.+-.+...-.|.-+
T Consensus 123 ~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~ 167 (301)
T PF06120_consen 123 INHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDL 167 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1246788888999999988888888888777777666654
No 83
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=80.81 E-value=1.1e+02 Score=35.09 Aligned_cols=155 Identities=17% Similarity=0.211 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhc--------ccccchhh-----------
Q 014127 163 LAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT--------HQTGIYLK----------- 223 (430)
Q Consensus 163 Ea~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~--------~q~~~~a~----------- 223 (430)
+..++.+.+.+.+.|-..|..++.-...+....+++..|...+..|+.--... .....+..
T Consensus 274 L~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~~ye~Di~~ 353 (717)
T PF09730_consen 274 LLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGDYYEVDING 353 (717)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccccchhhhcccc
Confidence 34567788888888888888888877777777777777766666666511111 00000000
Q ss_pred -HHHh--hhhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhCC------CCh-hHHHHHHHHHHHHH
Q 014127 224 -RLAA--SKGVEFEREILEAEYTFIADKIIQLEDKA----KKLEGNIEMTRKEIED------PTE-VEIELKRRLGQLTD 289 (430)
Q Consensus 224 -q~~a--~~~~EaE~e~l~qE~~~l~~el~~lq~kl----k~lE~EIq~Lr~~ls~------pS~-~e~ELE~RL~~LTe 289 (430)
.+.. -.....|...++.|+..|..++..++... ...+.+++.|..++.. +.. -..+|++.|+.++.
T Consensus 354 ~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~ 433 (717)
T PF09730_consen 354 LEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSK 433 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 0100 11222223334444444444443222222 2234555555554422 122 37799999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 014127 290 HLIQKQAQVEALSSEKATLAFRIEAVSR 317 (430)
Q Consensus 290 ~LIqKQtqLEsLssEk~AL~lqLERle~ 317 (430)
.--..|+.|-....|..+.--.|-.+-+
T Consensus 434 ~A~E~q~~LnsAQDELvtfSEeLAqLYH 461 (717)
T PF09730_consen 434 LAGESQGSLNSAQDELVTFSEELAQLYH 461 (717)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888643
No 84
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=80.69 E-value=93 Score=34.00 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014127 236 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 270 (430)
Q Consensus 236 e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~l 270 (430)
...+.|...+...+..|+.++.....++..++...
T Consensus 298 ~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e 332 (522)
T PF05701_consen 298 EKAKEEASSLRASVESLRSELEKEKEELERLKERE 332 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555555555555544
No 85
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=80.59 E-value=4.6 Score=38.10 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 014127 275 EVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLD 320 (430)
Q Consensus 275 ~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~ 320 (430)
.....|+.++..|.+.|-.|+..++.|.-|..+|.+++--++..++
T Consensus 123 ~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~ 168 (194)
T PF08614_consen 123 AELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLR 168 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466889999999999999999999999999999999887765444
No 86
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=80.40 E-value=78 Score=32.97 Aligned_cols=145 Identities=17% Similarity=0.158 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchh-------hHHHhhhhhhHHHHHHHHHHHHH
Q 014127 173 LARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYL-------KRLAASKGVEFEREILEAEYTFI 245 (430)
Q Consensus 173 ~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a-------~q~~a~~~~EaE~e~l~qE~~~l 245 (430)
+.+-|..||...+.=..-+..|.+....++....++.+.....+..+.++ .+++ ....-.-..+..|+..|
T Consensus 14 L~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL--~~sre~Nk~L~~Ev~~L 91 (319)
T PF09789_consen 14 LSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLL--SESREQNKKLKEEVEEL 91 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHH--HHHHHHHHHHHHHHHHH
Confidence 45566777777666555577777777777777776665544333222221 1222 22222224556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-CC---h-hHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 014127 246 ADKIIQLEDKAKKLEGNIEMTRKEIED-PT---E-VEIELKRRL-------GQLTDHLIQKQAQVEALSSEKATLAFRIE 313 (430)
Q Consensus 246 ~~el~~lq~klk~lE~EIq~Lr~~ls~-pS---~-~e~ELE~RL-------~~LTe~LIqKQtqLEsLssEk~AL~lqLE 313 (430)
.+++..++..++.+...+...+..... ++ + ....|=.+| .+|-.-|-.-=...|.+.+|+.+..-...
T Consensus 92 rqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~ 171 (319)
T PF09789_consen 92 RQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAH 171 (319)
T ss_pred HHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666665543211 11 1 111111111 11111111111233566777777777777
Q ss_pred HHHHHH
Q 014127 314 AVSRLL 319 (430)
Q Consensus 314 Rle~~~ 319 (430)
|+++.+
T Consensus 172 RLN~EL 177 (319)
T PF09789_consen 172 RLNHEL 177 (319)
T ss_pred HHHHHH
Confidence 777654
No 87
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.28 E-value=87 Score=35.24 Aligned_cols=68 Identities=13% Similarity=0.131 Sum_probs=39.9
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHH
Q 014127 223 KRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLI 292 (430)
Q Consensus 223 ~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LI 292 (430)
+-.++.++...|...+--+.+.|...|+.+..+.++-..-|.+.-..+..|+-.-. +.+-++++..|.
T Consensus 652 ~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~--~~Q~~~iqsiL~ 719 (741)
T KOG4460|consen 652 VLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILS--AYQRKCIQSILK 719 (741)
T ss_pred cchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccc--HHHHHHHHHHHH
Confidence 34456666666766666677777777777777776655555544444444431111 555566666553
No 88
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=80.13 E-value=0.55 Score=52.38 Aligned_cols=107 Identities=23% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 014127 97 DAIKERENMVARLEGEKQSLEKILEERA--KQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLA 174 (430)
Q Consensus 97 ~~i~ere~~~arl~~ek~~l~k~l~e~~--~~q~~ea~el~~~m~e~~~A~elE~~aH~aTR~qA~aREa~LE~enae~a 174 (430)
++++++.+=|.|||.+-+..-|=|++-. +.|.++-.+-...+|++...+|.+..+=++.+.+ ..+++.++.++.
T Consensus 301 D~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~q----le~~k~qi~eLe 376 (713)
T PF05622_consen 301 DELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQ----LEEYKKQIQELE 376 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHH
Confidence 7888999999999998888877777655 6777888888889999999999999876665544 346777778888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHH
Q 014127 175 RALAAAQKKLEMETNQVAELRQQTELKEVAHEE 207 (430)
Q Consensus 175 kALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~s 207 (430)
..+...++..+.-.-++..|.+++..++.+.+.
T Consensus 377 ~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~ 409 (713)
T PF05622_consen 377 QKLSEESRRADKLEFENKQLEEKLEALEEEKER 409 (713)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777665555555566666555444333
No 89
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=80.05 E-value=80 Score=32.85 Aligned_cols=61 Identities=26% Similarity=0.412 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHH
Q 014127 247 DKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQK-QAQVEALSSEKATLAFRIEA 314 (430)
Q Consensus 247 ~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqK-QtqLEsLssEk~AL~lqLER 314 (430)
.+|..++.+......++.+|++ ...+||+-|-+==+.|+.| |.+++.|.+||..|+.+|+.
T Consensus 142 k~i~~Le~e~~~~q~~le~Lr~-------EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 142 KKIERLEKEKSAKQEELERLRR-------EKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3333444433334444444443 4667777777777777766 77899999999999988875
No 90
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=79.92 E-value=66 Score=31.84 Aligned_cols=83 Identities=18% Similarity=0.287 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 014127 238 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED----PTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIE 313 (430)
Q Consensus 238 l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~----pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLE 313 (430)
++..+..+..++..++.+...++..|..+...+.. ....-..||..|..|...+-......+.|..-|-+|...+.
T Consensus 221 ~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIa 300 (312)
T PF00038_consen 221 LRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIA 300 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33344444455555555555555555555443322 12235566777777777777777777777777777777666
Q ss_pred HHHHHHH
Q 014127 314 AVSRLLD 320 (430)
Q Consensus 314 Rle~~~~ 320 (430)
.-.++++
T Consensus 301 tYR~LLE 307 (312)
T PF00038_consen 301 TYRKLLE 307 (312)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 6555543
No 91
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=79.90 E-value=75 Score=32.44 Aligned_cols=39 Identities=21% Similarity=0.406 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 014127 282 RRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLD 320 (430)
Q Consensus 282 ~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~ 320 (430)
+.|..|...|-.++..++.+..++..+.-++..+++..+
T Consensus 230 ~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 230 KELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555555555555544443
No 92
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=79.88 E-value=74 Score=32.42 Aligned_cols=67 Identities=15% Similarity=0.216 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhhHHHHHHHHH
Q 014127 249 IIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHL---------------IQKQAQVEALSSEKATLAFRIE 313 (430)
Q Consensus 249 l~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~L---------------IqKQtqLEsLssEk~AL~lqLE 313 (430)
+..++.++..++.++..++.......|.-..++.++..|..+| -.++.+++.|..|....+-.++
T Consensus 216 i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~ 295 (362)
T TIGR01010 216 ISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLK 295 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666565443322333444444554444444 3344555555555555555555
Q ss_pred HH
Q 014127 314 AV 315 (430)
Q Consensus 314 Rl 315 (430)
.+
T Consensus 296 ~~ 297 (362)
T TIGR01010 296 AA 297 (362)
T ss_pred HH
Confidence 43
No 93
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=79.62 E-value=74 Score=32.20 Aligned_cols=70 Identities=16% Similarity=0.147 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 014127 240 AEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 315 (430)
Q Consensus 240 qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERl 315 (430)
.++..++.++..++.++..++.++..++.++.. ....++..+.+.+-.=+.++..+......++.+|+..
T Consensus 203 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~------~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~ 272 (423)
T TIGR01843 203 RERAEAQGELGRLEAELEVLKRQIDELQLERQQ------IEQTFREEVLEELTEAQARLAELRERLNKARDRLQRL 272 (423)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444445555555555555555544444332 1112223333344444555555555566666666654
No 94
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=79.34 E-value=78 Score=32.31 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHHH
Q 014127 303 SEKATLAFRIEAVSR 317 (430)
Q Consensus 303 sEk~AL~lqLERle~ 317 (430)
.|...|.-+++.++.
T Consensus 276 ~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 276 SEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555544
No 95
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=79.27 E-value=69 Score=33.22 Aligned_cols=66 Identities=18% Similarity=0.285 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 236 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDP-------TEVEIELKRRLGQLTDHLIQKQAQVEAL 301 (430)
Q Consensus 236 e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~p-------S~~e~ELE~RL~~LTe~LIqKQtqLEsL 301 (430)
..++.|+..|..++..++.+++..-.|.+.|...+... +..-.+|..|+......|..=|.++-.+
T Consensus 230 ~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 230 RRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566666666666666665555555555544221 1124455555555555555555555443
No 96
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=78.75 E-value=1.4e+02 Score=35.08 Aligned_cols=119 Identities=16% Similarity=0.079 Sum_probs=66.4
Q ss_pred HhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH----HHHHHHH
Q 014127 95 AGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLL----AKLETAN 170 (430)
Q Consensus 95 ~~~~i~ere~~~arl~~ek~~l~k~l~e~~~~q~~ea~el~~~m~e~~~A~elE~~aH~aTR~qA~aRE----a~LE~en 170 (430)
-+-.|+|+-....=++.+-+.-+.-|+-|..-=..|-|+--.-..+.-+-++.+++ ||-.|.-+- .=|+.+|
T Consensus 250 ~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkq----t~t~a~gdseqatkylh~en 325 (1265)
T KOG0976|consen 250 TCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQ----TRTRADGDSEQATKYLHLEN 325 (1265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----HHHHhhccHHHHHHHHHHHH
Confidence 34567777665544444433333333333333333444433333333333333333 344443332 2377788
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhccc
Q 014127 171 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ 217 (430)
Q Consensus 171 ae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q 217 (430)
-.+.+-++++|..|-+...++..|.++...+|...+.+-.+...+++
T Consensus 326 mkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e 372 (1265)
T KOG0976|consen 326 MKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQE 372 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHH
Confidence 88888888888888888877777777777777766665555544443
No 97
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=78.69 E-value=92 Score=35.80 Aligned_cols=76 Identities=24% Similarity=0.367 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhCCCChh------HHHHHHHHHHHHHHHHHHHHHHHHHHhh---
Q 014127 237 ILEAEYTFIADKIIQLEDKAKKLE---GNIEMTRKEIEDPTEV------EIELKRRLGQLTDHLIQKQAQVEALSSE--- 304 (430)
Q Consensus 237 ~l~qE~~~l~~el~~lq~klk~lE---~EIq~Lr~~ls~pS~~------e~ELE~RL~~LTe~LIqKQtqLEsLssE--- 304 (430)
++-++|+.|+++-..||..+..+. .|.+-+++.+..-... +.|=--||+.+++.=+ -..||+|-+|
T Consensus 94 rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~ql--eEALesl~~EReq 171 (717)
T PF09730_consen 94 RLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQL--EEALESLKSEREQ 171 (717)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 344566666666666666653322 3344444444332211 1111234444433211 1356666655
Q ss_pred HHHHHHHHHH
Q 014127 305 KATLAFRIEA 314 (430)
Q Consensus 305 k~AL~lqLER 314 (430)
|++|+..|..
T Consensus 172 k~~LrkEL~~ 181 (717)
T PF09730_consen 172 KNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHH
Confidence 4555555554
No 98
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=78.68 E-value=68 Score=31.27 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 014127 244 FIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIE 313 (430)
Q Consensus 244 ~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLE 313 (430)
.|..++..|+.+..++-.+...+.++...-......|..+++.-...+-+|-+-+..-..-...|..-++
T Consensus 99 ~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ie 168 (193)
T PF14662_consen 99 SLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIE 168 (193)
T ss_pred HHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3445555555555555555555555443322244566666666666555555444444444444443333
No 99
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=78.65 E-value=48 Score=29.51 Aligned_cols=100 Identities=23% Similarity=0.191 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchh----hHHHhhhhhhHHHHH
Q 014127 162 LLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYL----KRLAASKGVEFEREI 237 (430)
Q Consensus 162 REa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a----~q~~a~~~~EaE~e~ 237 (430)
+...+.......++....+|.+-+.+...-+..-+.+..+......++..+.........+ .+.-.+|..+ +..
T Consensus 25 ~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~q--k~~ 102 (132)
T PF07926_consen 25 QLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQ--KEQ 102 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHH
Confidence 3344444444444444455555554444433333333333333333333333332222222 1222345222 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 238 LEAEYTFIADKIIQLEDKAKKLEGNI 263 (430)
Q Consensus 238 l~qE~~~l~~el~~lq~klk~lE~EI 263 (430)
+..|+..+...+..|..+.+-|=+.|
T Consensus 103 le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 103 LEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433333
No 100
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=78.41 E-value=4.5 Score=38.02 Aligned_cols=81 Identities=21% Similarity=0.166 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhh
Q 014127 133 ELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRN 212 (430)
Q Consensus 133 el~~~m~e~~~A~elE~~aH~aTR~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl 212 (430)
||+.+--.+|.++....+.=.+.|....+-...|..+|.-|--.++..+..+.+...+++.|.+.+..|+.-+.-++..+
T Consensus 1 eL~~~~aq~~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r~d~ 80 (181)
T PF09311_consen 1 ELGLGEAQVMRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKREDL 80 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHT---------------------------------------------------
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhccccc
Confidence 46666677778888888888888888888888999999999999999999998888999999999988888776555553
Q ss_pred h
Q 014127 213 S 213 (430)
Q Consensus 213 ~ 213 (430)
.
T Consensus 81 ~ 81 (181)
T PF09311_consen 81 I 81 (181)
T ss_dssp -
T ss_pred c
Confidence 3
No 101
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=77.85 E-value=38 Score=37.11 Aligned_cols=76 Identities=21% Similarity=0.312 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 014127 244 FIADKIIQLEDKA----------KKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIE 313 (430)
Q Consensus 244 ~l~~el~~lq~kl----------k~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLE 313 (430)
+|+.++..||-++ .++...|+.|=..=..---...++++-|+-|-+.|..-|..|..-..||.+|+++|+
T Consensus 342 yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelk 421 (527)
T PF15066_consen 342 YLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELK 421 (527)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4455555555553 334444444422222222357799999999999999999999999999999999999
Q ss_pred HHHHHH
Q 014127 314 AVSRLL 319 (430)
Q Consensus 314 Rle~~~ 319 (430)
+++.-|
T Consensus 422 K~k~ny 427 (527)
T PF15066_consen 422 KIKANY 427 (527)
T ss_pred HHhhhH
Confidence 986544
No 102
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=77.76 E-value=74 Score=31.19 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 014127 165 KLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 215 (430)
Q Consensus 165 ~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~ 215 (430)
.|....-.-...|-.|+..+.-....+..|++++-.++.+...|+..+...
T Consensus 56 ~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 56 ELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 334444444456667888888888899999999999999999999998887
No 103
>PRK10884 SH3 domain-containing protein; Provisional
Probab=77.54 E-value=19 Score=34.87 Aligned_cols=31 Identities=26% Similarity=0.238 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 014127 277 EIELKRRLGQLTDHLIQKQAQVEALSSEKAT 307 (430)
Q Consensus 277 e~ELE~RL~~LTe~LIqKQtqLEsLssEk~A 307 (430)
..+|+.+..+|.+.|..-|+.++.+..++..
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677777755555555544444444333
No 104
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=77.52 E-value=1.4e+02 Score=34.44 Aligned_cols=56 Identities=25% Similarity=0.214 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHhHHHHHHHHHHHHHHhhhhccc
Q 014127 162 LLAKLETANADLARALAAAQKKLEMET-NQVAELRQQTELKEVAHEELSQRNSNTHQ 217 (430)
Q Consensus 162 REa~LE~enae~akALA~~Qr~lee~~-~rvaeLeqkv~~lE~~~~sLrqrl~~~~q 217 (430)
+-+.||..|...-+++-.+..-++-++ .+-++++++-..+-....+||+.|....+
T Consensus 545 ~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq 601 (961)
T KOG4673|consen 545 LAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQ 601 (961)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544444333222 12334555555555555666666655544
No 105
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=77.33 E-value=1.6e+02 Score=34.88 Aligned_cols=85 Identities=12% Similarity=0.052 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 014127 231 VEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRK-EIED--PTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKAT 307 (430)
Q Consensus 231 ~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~-~ls~--pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~A 307 (430)
.+.+.+.+++++..+.+.+..++..+..++..++.-.. .... +.++-.+++..+..+...+-..+.++-.+......
T Consensus 775 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 854 (1047)
T PRK10246 775 DEETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQGEIRQQLKQ 854 (1047)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555444433332100 0000 22334566777777777666666666666555555
Q ss_pred HHHHHHHH
Q 014127 308 LAFRIEAV 315 (430)
Q Consensus 308 L~lqLERl 315 (430)
+.-.+.++
T Consensus 855 ~~~~~~~~ 862 (1047)
T PRK10246 855 DADNRQQQ 862 (1047)
T ss_pred HHHHHHHH
Confidence 44444443
No 106
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=76.96 E-value=1.8e+02 Score=35.12 Aligned_cols=66 Identities=6% Similarity=0.121 Sum_probs=37.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 014127 150 QRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 215 (430)
Q Consensus 150 ~aH~aTR~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~ 215 (430)
..|.++++.++...--++..+...-.-|++.+..+.-.+.+...-+..+.....+.....+++...
T Consensus 209 e~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~ 274 (1141)
T KOG0018|consen 209 EKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKV 274 (1141)
T ss_pred HHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777666666666665555544444444444444444444444444433
No 107
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=76.76 E-value=71 Score=30.95 Aligned_cols=51 Identities=24% Similarity=0.268 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 014127 165 KLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 215 (430)
Q Consensus 165 ~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~ 215 (430)
+|+......-..|...+..+.....+...+...-...-....+.+++++.+
T Consensus 82 eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei 132 (240)
T PF12795_consen 82 ELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEI 132 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444344444444444444
No 108
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=76.67 E-value=1.1e+02 Score=32.49 Aligned_cols=70 Identities=13% Similarity=0.221 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCC-----hhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 014127 251 QLEDKAKKLEGNIEMTRKEIEDPT-----EVEIELKRRLGQLTDHLI-QKQAQVEALSSEKATLAFRIEAVSRLLD 320 (430)
Q Consensus 251 ~lq~klk~lE~EIq~Lr~~ls~pS-----~~e~ELE~RL~~LTe~LI-qKQtqLEsLssEk~AL~lqLERle~~~~ 320 (430)
.++.++..++.+|..++.++..-. ....+.+.|+.+|-...+ .=+.+++.+..+...++.+|+.++..+.
T Consensus 240 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 240 TIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444443210 123345667777665544 5677788888888888888888776554
No 109
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=76.16 E-value=82 Score=36.47 Aligned_cols=49 Identities=35% Similarity=0.346 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHH
Q 014127 158 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHE 206 (430)
Q Consensus 158 qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~ 206 (430)
.-..-...|+.+-..+.-.|+.|+..++.-..++-++++++..+...+.
T Consensus 593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~ 641 (769)
T PF05911_consen 593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELE 641 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666777777777777777777777666666665555555
No 110
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=75.35 E-value=68 Score=29.58 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHH
Q 014127 166 LETANADLARALAAAQKKLEMETNQVAELRQQTE 199 (430)
Q Consensus 166 LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~ 199 (430)
++.+..+....|+..+++++.-..+...+...+.
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQERIQELESELE 112 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444333
No 111
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=75.33 E-value=57 Score=29.31 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=17.2
Q ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 014127 179 AAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 215 (430)
Q Consensus 179 ~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~ 215 (430)
+++..|.-.-.++..|.+++..++...+.++++|..+
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l 56 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKL 56 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445555555555555554444443
No 112
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=75.28 E-value=82 Score=30.44 Aligned_cols=13 Identities=8% Similarity=0.099 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 014127 392 LVCLHLWVIYILL 404 (430)
Q Consensus 392 ~v~LHlwV~~vL~ 404 (430)
+.+|.-=|.++.+
T Consensus 261 v~lLn~nI~~L~~ 273 (302)
T PF10186_consen 261 VFLLNKNIAQLCF 273 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444555544
No 113
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=75.00 E-value=70 Score=29.55 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 014127 242 YTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRL 318 (430)
Q Consensus 242 ~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~ 318 (430)
+..+.+++...+.....+...+..|+.+...+..| .|..-.......++.+..+...|.-.++.++..
T Consensus 107 ~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P---------~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~ 174 (177)
T PF13870_consen 107 LAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVP---------ALLRDYDKTKEEVEELRKEIKELERKVEILEMR 174 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444555555555666666666666554322 122223334455555666666666666665543
No 114
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=74.95 E-value=2.1e+02 Score=35.00 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=12.6
Q ss_pred cCCCCccccccccccccccc
Q 014127 22 DGRLPSNIRGNHKSNAGIRA 41 (430)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~ 41 (430)
..+.+-.+.|+|-.-.|..-
T Consensus 383 p~~~~~~f~Gn~LPFIGfTy 402 (1317)
T KOG0612|consen 383 PPRIPKAFSGNHLPFIGFTY 402 (1317)
T ss_pred CCCCCCCCcCCcCCeeeeee
Confidence 34566677788876666543
No 115
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=74.88 E-value=1.7e+02 Score=33.98 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014127 159 ALQLLAKLETANADLARALAAAQKKLEME 187 (430)
Q Consensus 159 A~aREa~LE~enae~akALA~~Qr~lee~ 187 (430)
.-.|..+|+.++.++...|-++.+.++..
T Consensus 161 ~eer~~kl~~~~qe~naeL~rarqreemn 189 (916)
T KOG0249|consen 161 IEERTRKLEEQLEELNAELQRARQREKMN 189 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555555555555555555443
No 116
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=74.83 E-value=2e+02 Score=34.68 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014127 278 IELKRRLGQLTDHLIQKQAQVEA 300 (430)
Q Consensus 278 ~ELE~RL~~LTe~LIqKQtqLEs 300 (430)
.+++.++..|-+.|-.+++.+..
T Consensus 826 ~~~~~~~~~l~~~~~~~~~~~~~ 848 (1201)
T PF12128_consen 826 RDLEQELQELEQELNQLQKEVKQ 848 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445444444433
No 117
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=74.39 E-value=1.1e+02 Score=31.68 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=7.6
Q ss_pred hHHHHHHHHhHHHHHH
Q 014127 187 ETNQVAELRQQTELKE 202 (430)
Q Consensus 187 ~~~rvaeLeqkv~~lE 202 (430)
....+.+|++++..+.
T Consensus 109 ~~e~v~qLrHeL~~kd 124 (306)
T PF04849_consen 109 ALEQVEQLRHELSMKD 124 (306)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344555555554443
No 118
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=74.06 E-value=36 Score=34.87 Aligned_cols=85 Identities=22% Similarity=0.194 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 014127 238 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 317 (430)
Q Consensus 238 l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~ 317 (430)
+..|+..++.+-..+..++..+|++-+.+.+++..-.....+|+..-...-...-..|-++-.+..+..++..|++-+..
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~ 127 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASN 127 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666667777777777777777666655333344454444455555556666666667777777777777665
Q ss_pred HHHhc
Q 014127 318 LLDEN 322 (430)
Q Consensus 318 ~~~e~ 322 (430)
.++..
T Consensus 128 ~L~~L 132 (314)
T PF04111_consen 128 QLDRL 132 (314)
T ss_dssp HHHCH
T ss_pred HHHHH
Confidence 55543
No 119
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=73.87 E-value=94 Score=30.49 Aligned_cols=42 Identities=24% Similarity=0.281 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 014127 231 VEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 272 (430)
Q Consensus 231 ~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~ 272 (430)
-..|.++...|+.....+...+..++..++.+|..||..+..
T Consensus 64 K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 64 KQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELAC 105 (202)
T ss_pred hhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHh
Confidence 334455666676666666777778888888888888887644
No 120
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=73.69 E-value=13 Score=41.62 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 014127 287 LTDHLIQKQAQVEALSSEKATLAFRIEAVS 316 (430)
Q Consensus 287 LTe~LIqKQtqLEsLssEk~AL~lqLERle 316 (430)
.++.-..|+.+|+.|..|+..|.-+|..++
T Consensus 557 ~~~~~~~k~~~l~~L~~En~~L~~~l~~le 586 (722)
T PF05557_consen 557 TSKAEQIKKSTLEALQAENEDLLARLRSLE 586 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344445689999999999999998887664
No 121
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=73.04 E-value=78 Score=29.22 Aligned_cols=26 Identities=15% Similarity=0.118 Sum_probs=14.6
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHhh
Q 014127 187 ETNQVAELRQQTELKEVAHEELSQRN 212 (430)
Q Consensus 187 ~~~rvaeLeqkv~~lE~~~~sLrqrl 212 (430)
-....+.|.+.|..++.+++....+.
T Consensus 15 ~~~e~dsle~~v~~LEreLe~~q~~~ 40 (140)
T PF10473_consen 15 SESEKDSLEDHVESLERELEMSQENK 40 (140)
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHhH
Confidence 34455666666666666665544443
No 122
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=71.77 E-value=7 Score=40.03 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 014127 241 EYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLD 320 (430)
Q Consensus 241 E~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~ 320 (430)
++...++.|...+.++..++..|+.|+.+..........|+..+......|-.=+.-+..|.+|+.-|.-+++.+.....
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~ 308 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLK 308 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhc
Confidence 34444455556666666666666666666655444566666666666666766677777777777777766666655443
No 123
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=71.67 E-value=85 Score=29.01 Aligned_cols=22 Identities=9% Similarity=0.179 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHhhhhccc
Q 014127 196 QQTELKEVAHEELSQRNSNTHQ 217 (430)
Q Consensus 196 qkv~~lE~~~~sLrqrl~~~~q 217 (430)
.+++.-+...++|..++.++..
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEr 31 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLER 31 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHH
Confidence 3444445555555555555443
No 124
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=71.64 E-value=1.3 Score=50.90 Aligned_cols=50 Identities=32% Similarity=0.494 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 251 QLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEA 300 (430)
Q Consensus 251 ~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEs 300 (430)
.+..++..++.++..|+.++.....+..+|+++|..+...|-.=++.++.
T Consensus 261 ~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~ 310 (859)
T PF01576_consen 261 ALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEE 310 (859)
T ss_dssp --------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56667777888888888887766656777888887777777655555544
No 125
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=71.59 E-value=38 Score=38.15 Aligned_cols=73 Identities=29% Similarity=0.384 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 014127 237 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPT---EVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLA 309 (430)
Q Consensus 237 ~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS---~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~ 309 (430)
.++.|.+.|...+.+++..+..++.++..++..+...- ..--.++.+|..|.-.|..|-..+|.|..+.+-+.
T Consensus 433 ~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 433 RLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666666654321 12334888999999999999999998888877776
No 126
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=71.45 E-value=1.3e+02 Score=31.24 Aligned_cols=63 Identities=24% Similarity=0.328 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 014127 252 LEDKAKKLEGNIEMTRKEIEDPTE-VEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEA 314 (430)
Q Consensus 252 lq~klk~lE~EIq~Lr~~ls~pS~-~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLER 314 (430)
|..++..+..+--.|...+..-.. --.-|-++|..|---...||..++.|..||--|+-.||.
T Consensus 111 L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~ 174 (310)
T PF09755_consen 111 LSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQ 174 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Confidence 445555555554455555544221 234677888888777789999999999999888888876
No 127
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=71.41 E-value=2e+02 Score=33.32 Aligned_cols=46 Identities=26% Similarity=0.328 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHHHhc
Q 014127 277 EIELKRRLGQLTDHLIQKQAQV----EALSSEKATLAFRIEAVSRLLDEN 322 (430)
Q Consensus 277 e~ELE~RL~~LTe~LIqKQtqL----EsLssEk~AL~lqLERle~~~~e~ 322 (430)
+..|=.++..|-..|-.|-.++ .-+..|+--|..||+..++.+++.
T Consensus 582 ~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel 631 (961)
T KOG4673|consen 582 ESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEEL 631 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666665554 236677888888888877666543
No 128
>PRK11281 hypothetical protein; Provisional
Probab=70.93 E-value=2.5e+02 Score=34.05 Aligned_cols=56 Identities=16% Similarity=0.071 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHh
Q 014127 156 RMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 211 (430)
Q Consensus 156 R~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqr 211 (430)
|...+++.+-|+.+|.-.-..|.......+--+.+.+.+..++..++...+.|+..
T Consensus 194 ~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~ 249 (1113)
T PRK11281 194 RVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEA 249 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555444444444445555555555555555544443
No 129
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=70.74 E-value=1.3e+02 Score=30.87 Aligned_cols=82 Identities=21% Similarity=0.155 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHhHHHHHHHHH
Q 014127 130 EASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETN----QVAELRQQTELKEVAH 205 (430)
Q Consensus 130 ea~el~~~m~e~~~A~elE~~aH~aTR~qA~aREa~LE~enae~akALA~~Qr~lee~~~----rvaeLeqkv~~lE~~~ 205 (430)
|--|.|++.-|-..-++-|+ .++..|.-+|+..|..+..-+-+..-+.+.+.. ++..|+..+.-.-.-+
T Consensus 35 El~EFQegSrE~EaelesqL-------~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aik 107 (333)
T KOG1853|consen 35 ELNEFQEGSREIEAELESQL-------DQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIK 107 (333)
T ss_pred HHHHHhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666555544454444 356667777888888877777777777776543 3445666666666666
Q ss_pred HHHHHhhhhcccc
Q 014127 206 EELSQRNSNTHQT 218 (430)
Q Consensus 206 ~sLrqrl~~~~q~ 218 (430)
+.|+..|....|.
T Consensus 108 eql~kyiReLEQa 120 (333)
T KOG1853|consen 108 EQLRKYIRELEQA 120 (333)
T ss_pred HHHHHHHHHHHHh
Confidence 7777666666553
No 130
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=70.47 E-value=3.1e+02 Score=34.99 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 014127 166 LETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 215 (430)
Q Consensus 166 LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~ 215 (430)
|...|-.|..-|..-++....-..+......+++.++++...|+++-..+
T Consensus 708 L~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll 757 (1822)
T KOG4674|consen 708 LEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLL 757 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666555555555566666666666665544333
No 131
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=70.33 E-value=1.1e+02 Score=29.63 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=8.3
Q ss_pred HHhHHHHHHHHHHHHHHhhhh
Q 014127 194 LRQQTELKEVAHEELSQRNSN 214 (430)
Q Consensus 194 Leqkv~~lE~~~~sLrqrl~~ 214 (430)
+..++..+....+.|+.++..
T Consensus 25 ~~~~l~~~~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 25 LRSELQQLKEENEELRRRIEE 45 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444333
No 132
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=70.00 E-value=1.5e+02 Score=31.32 Aligned_cols=55 Identities=11% Similarity=0.072 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 014127 160 LQLLAKLETANADLARALAAAQKKLEM--------ETNQVAELRQQTELKEVAHEELSQRNSN 214 (430)
Q Consensus 160 ~aREa~LE~enae~akALA~~Qr~lee--------~~~rvaeLeqkv~~lE~~~~sLrqrl~~ 214 (430)
..+..+++.+..+..++|.+.+++-.. -..++..+.+++...+.....++.++..
T Consensus 167 ~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~ 229 (498)
T TIGR03007 167 DEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDA 229 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666655432110 1133444555555544444444444333
No 133
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=69.56 E-value=1.5 Score=48.99 Aligned_cols=8 Identities=13% Similarity=0.185 Sum_probs=2.1
Q ss_pred cccccccc
Q 014127 11 FSDVKIGM 18 (430)
Q Consensus 11 ~~~~~~~~ 18 (430)
+||+..+.
T Consensus 96 ~Pd~~~Ia 103 (713)
T PF05622_consen 96 LPDLQAIA 103 (713)
T ss_dssp ---HHHHH
T ss_pred CCCHHHHH
Confidence 34444443
No 134
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=69.34 E-value=2.2e+02 Score=34.60 Aligned_cols=142 Identities=22% Similarity=0.246 Sum_probs=75.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHhHH-HHHH--HHHHHHHHhhhhcccccchhh
Q 014127 148 EKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQ-VAELRQQT-ELKE--VAHEELSQRNSNTHQTGIYLK 223 (430)
Q Consensus 148 E~~aH~aTR~qA~aREa~LE~enae~akALA~~Qr~lee~~~r-vaeLeqkv-~~lE--~~~~sLrqrl~~~~q~~~~a~ 223 (430)
+-.++.---|.+..+.++=..-.. +|+.||+-|+.+.-- +-..-..+ ..+| .=-.+||.+|+.+.|...++.
T Consensus 1008 ~EA~~AK~QMDaIKqmIekKv~L~----~L~qCqdALeKqnIa~AL~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesLQ 1083 (1439)
T PF12252_consen 1008 EEARQAKAQMDAIKQMIEKKVVLQ----ALTQCQDALEKQNIAGALQALNNIPSDKEMSKISSELREQIQSVKQDLESLQ 1083 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 334444455666666554333222 999999999987521 11111111 0011 123567777777766644442
Q ss_pred HHH-h--hhhhhHHHHHHHHHHHHHHHHHHHHHH-----------H---HHHHHHHHHHHHHH---hCCCC-----hhHH
Q 014127 224 RLA-A--SKGVEFEREILEAEYTFIADKIIQLED-----------K---AKKLEGNIEMTRKE---IEDPT-----EVEI 278 (430)
Q Consensus 224 q~~-a--~~~~EaE~e~l~qE~~~l~~el~~lq~-----------k---lk~lE~EIq~Lr~~---ls~pS-----~~e~ 278 (430)
-.+ . -...+..+...+.=+..++.++..|+. . +..+.+||..||+. |..-+ ++.-
T Consensus 1084 RAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSDIE 1163 (1439)
T PF12252_consen 1084 RAVVTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRNEKIRMHSGTDKVDFSDIE 1163 (1439)
T ss_pred HhhcccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCcccHHHHH
Confidence 111 1 233444444444444455555543332 2 34477888888874 32222 3577
Q ss_pred HHHHHHHHHHHHHHH
Q 014127 279 ELKRRLGQLTDHLIQ 293 (430)
Q Consensus 279 ELE~RL~~LTe~LIq 293 (430)
-||+||+.+...|+.
T Consensus 1164 kLE~qLq~~~~kL~d 1178 (1439)
T PF12252_consen 1164 KLEKQLQVIHTKLYD 1178 (1439)
T ss_pred HHHHHHHHhhhhhHH
Confidence 899999998888753
No 135
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=69.24 E-value=1.1e+02 Score=29.41 Aligned_cols=55 Identities=9% Similarity=0.123 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhccccc
Q 014127 165 KLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTG 219 (430)
Q Consensus 165 ~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~ 219 (430)
-|..-..++...|..+.+.+-.....--.++.++...+.....|..+-..+-+.|
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G 82 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKG 82 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3444445555566666666666666666666777777777777766665554443
No 136
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=68.19 E-value=2.4e+02 Score=32.83 Aligned_cols=65 Identities=26% Similarity=0.257 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhccccc
Q 014127 155 TRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTG 219 (430)
Q Consensus 155 TR~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~ 219 (430)
.|.+...+.+++..+...+..--+..-+.|.++..-+.+|.+.-...+.+...|+.+|+.+++.-
T Consensus 86 ~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken 150 (769)
T PF05911_consen 86 IKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKEN 150 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444455555555555555555666666666666665543
No 137
>PF13514 AAA_27: AAA domain
Probab=67.78 E-value=2.7e+02 Score=33.20 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 014127 279 ELKRRLGQLTDHLIQKQAQVEALSS 303 (430)
Q Consensus 279 ELE~RL~~LTe~LIqKQtqLEsLss 303 (430)
+|+.++..|.+.+...+.+++.|..
T Consensus 907 ~l~~~~~~l~~~~~~~~~~l~~l~~ 931 (1111)
T PF13514_consen 907 ELEEELEELQEERAELEQELEALEG 931 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455555566666666666655543
No 138
>PTZ00121 MAEBL; Provisional
Probab=67.11 E-value=3.4e+02 Score=34.25 Aligned_cols=7 Identities=29% Similarity=0.273 Sum_probs=2.6
Q ss_pred HHHHHHh
Q 014127 145 FELEKQR 151 (430)
Q Consensus 145 ~elE~~a 151 (430)
+++.++.
T Consensus 1208 lEE~Rra 1214 (2084)
T PTZ00121 1208 AEEERKA 1214 (2084)
T ss_pred HHHHHHH
Confidence 3333333
No 139
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=66.95 E-value=84 Score=30.70 Aligned_cols=60 Identities=23% Similarity=0.331 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 014127 244 FIADKIIQLEDKAKKLEGNIEMTRKEIEDPT--EVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAF 310 (430)
Q Consensus 244 ~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS--~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~l 310 (430)
..+++...++.+++.++.+.++|+.-+..+. .+-.++|++|. +-|.+||.+.+.++.|.-
T Consensus 129 DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~-------~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 129 DVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELS-------RVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4456677788888888888899988887653 23455555544 345666666655555443
No 140
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=66.89 E-value=3e+02 Score=33.42 Aligned_cols=60 Identities=12% Similarity=0.078 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 014127 155 TRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 214 (430)
Q Consensus 155 TR~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~ 214 (430)
-++.-+++.+-|+.+|..+...+.......+--..+.+.+..++..++...+.|+..+-.
T Consensus 174 ~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 174 QLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777778888888877777776666666666777777677666666654433
No 141
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=66.35 E-value=68 Score=29.50 Aligned_cols=68 Identities=16% Similarity=0.247 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 014127 241 EYTFIADKIIQLEDKAKKLEGNIEMTRKEIE-------DPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATL 308 (430)
Q Consensus 241 E~~~l~~el~~lq~klk~lE~EIq~Lr~~ls-------~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL 308 (430)
+...+...+...+..++.....|..+..++. .....+..|...+......|-+.|.+|+.|..|+..+
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~l 94 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDL 94 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 3334444444444444444444444444332 2222455565556666666666666666655555443
No 142
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=66.34 E-value=1e+02 Score=27.76 Aligned_cols=78 Identities=23% Similarity=0.209 Sum_probs=38.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 014127 229 KGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPT---EVEIELKRRLGQLTDHLIQKQAQVEALSSEK 305 (430)
Q Consensus 229 ~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS---~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk 305 (430)
++.|.|...++.++..++..-..+..++-++-.+++.++....... ....+|+.|+..+-+.|=.|=..+|.|..+.
T Consensus 26 r~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv 105 (120)
T PF12325_consen 26 RRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADV 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4444444444444444444333344444333333333333222211 1355677777777777777776666655544
Q ss_pred H
Q 014127 306 A 306 (430)
Q Consensus 306 ~ 306 (430)
.
T Consensus 106 ~ 106 (120)
T PF12325_consen 106 Q 106 (120)
T ss_pred H
Confidence 3
No 143
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=66.19 E-value=1.6e+02 Score=30.03 Aligned_cols=64 Identities=25% Similarity=0.263 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 014127 131 ASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELR 195 (430)
Q Consensus 131 a~el~~~m~e~~~A~elE~~aH~aTR~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLe 195 (430)
|+++-..--.-...+.-|. -+...|+.+..|-.++.+-=..+-.++...+..++.-...+..+.
T Consensus 126 aseit~~GA~LydlL~kE~-~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~ 189 (267)
T PF10234_consen 126 ASEITQRGASLYDLLGKEV-ELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLA 189 (267)
T ss_pred HHHHHHHHHHHHHHHhchH-hHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444455555 667778888888887777666666666666666655444444333
No 144
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=65.86 E-value=3e+02 Score=33.18 Aligned_cols=25 Identities=12% Similarity=0.490 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCC
Q 014127 250 IQLEDKAKKLEGNIEMTRKEIEDPT 274 (430)
Q Consensus 250 ~~lq~klk~lE~EIq~Lr~~ls~pS 274 (430)
..++.+...+..++..++.++.+|+
T Consensus 438 ~~~~~~~~~~~~~l~~l~~~~~~~~ 462 (1201)
T PF12128_consen 438 EELQEQREQLKSELAELKQQLKNPQ 462 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 3455555556667777777777764
No 145
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=65.77 E-value=3e+02 Score=33.17 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHHHH
Q 014127 98 AIKERENMVARLEGEKQSLEKILEE 122 (430)
Q Consensus 98 ~i~ere~~~arl~~ek~~l~k~l~e 122 (430)
.+.+=++|..+++.=.+++.|..++
T Consensus 249 ~~~~i~e~~~~i~~l~e~~~k~~~e 273 (1174)
T KOG0933|consen 249 SAHEIEEMKDKIAKLDESLGKTDKE 273 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444555666665555555444443
No 146
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=63.77 E-value=1.9e+02 Score=30.03 Aligned_cols=66 Identities=23% Similarity=0.202 Sum_probs=40.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 014127 151 RHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETN-------QVAELRQQTELKEVAHEELSQRNSNTH 216 (430)
Q Consensus 151 aH~aTR~qA~aREa~LE~enae~akALA~~Qr~lee~~~-------rvaeLeqkv~~lE~~~~sLrqrl~~~~ 216 (430)
=|+..+|.|.+|=.+|-..---+-.||.+++..++.-.+ .-+.|..|++....+++-++.+++..+
T Consensus 88 ~~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lq 160 (338)
T KOG3647|consen 88 LHKESLMSAAQRPLELLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQ 160 (338)
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377778888888777765544455555555444443222 234567777777777777777766664
No 147
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=63.65 E-value=1.9e+02 Score=29.99 Aligned_cols=47 Identities=11% Similarity=0.237 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 014127 168 TANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 214 (430)
Q Consensus 168 ~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~ 214 (430)
..+.++...++....+|.++...+++++.++..++..+..+...+.+
T Consensus 67 Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~ 113 (301)
T PF06120_consen 67 MSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAE 113 (301)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35567777788888888888888888888888888887777665544
No 148
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.22 E-value=2.4e+02 Score=31.00 Aligned_cols=92 Identities=21% Similarity=0.303 Sum_probs=54.0
Q ss_pred HHHHHhHHhhHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 103 ENMVARLEGEKQSLEK---ILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAA 179 (430)
Q Consensus 103 e~~~arl~~ek~~l~k---~l~e~~~~q~~ea~el~~~m~e~~~A~elE~~aH~aTR~qA~aREa~LE~enae~akALA~ 179 (430)
++--.||-+|-.+|.- .|+|-.|.|. ..+.+++.+|-.+|..- ---++|++.|+.+|-+.
T Consensus 242 gd~~SrlkqEnlqLvhR~h~LEEq~reqE----------lraeE~l~Ee~rrhrEi-l~k~eReasle~Enlqm------ 304 (502)
T KOG0982|consen 242 GDRSSRLKQENLQLVHRYHMLEEQRREQE----------LRAEESLSEEERRHREI-LIKKEREASLEKENLQM------ 304 (502)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhh----------hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH------
Confidence 3445677777777776 5666666665 34566788888888643 23456778887776432
Q ss_pred HHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 014127 180 AQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 214 (430)
Q Consensus 180 ~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~ 214 (430)
.++.=--.+.+|+..+.-+...++.|-...+.
T Consensus 305 ---r~qqleeentelRs~~arlksl~dklaee~qr 336 (502)
T KOG0982|consen 305 ---RDQQLEEENTELRSLIARLKSLADKLAEEDQR 336 (502)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 22222223455666666666666655444333
No 149
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.83 E-value=3.4e+02 Score=32.76 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhh
Q 014127 155 TRMEALQLLAKLETANADLARALAAAQKKLEMETNQ----VAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKG 230 (430)
Q Consensus 155 TR~qA~aREa~LE~enae~akALA~~Qr~lee~~~r----vaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~ 230 (430)
+..+.....-+++++.-+.-.++-.|+-++..--.. -..=+.+++.++.+...+.++++.....+....+.. -.
T Consensus 742 ~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~--e~ 819 (1174)
T KOG0933|consen 742 DLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEY--ER 819 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 334444455556666666666666666555321111 111233444445555555555444433322221111 22
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 014127 231 VEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 271 (430)
Q Consensus 231 ~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls 271 (430)
...|.+.+++|+...+..+..+..+++++..++..++..+.
T Consensus 820 l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~ 860 (1174)
T KOG0933|consen 820 LQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVD 860 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666666777777777766666665543
No 150
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=62.61 E-value=1.7e+02 Score=29.07 Aligned_cols=101 Identities=19% Similarity=0.175 Sum_probs=62.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014127 191 VAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 270 (430)
Q Consensus 191 vaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~l 270 (430)
+.+++.++..++.-...|...+....++.. -......|.+-|.+|...+.++|+.-...+..||..|..++.+
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee~------~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~e- 75 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEEK------CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESE- 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 456677777777777777776666654421 2344556667788888888888888777777777777765432
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 014127 271 EDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFR 311 (430)
Q Consensus 271 s~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lq 311 (430)
-+++. +....++..+-.|..+.+.++..
T Consensus 76 ---------r~~~~----~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 76 ---------RNKRQ----EKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred ---------HHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 22234445666666666666555
No 151
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=61.33 E-value=1.5e+02 Score=29.03 Aligned_cols=86 Identities=20% Similarity=0.335 Sum_probs=57.6
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014127 224 RLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSS 303 (430)
Q Consensus 224 q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLss 303 (430)
|.....+.|.-+-.|..+..++...|...++++..+..+++..+.+-.. .+..--+-+.++-.|..
T Consensus 96 Qt~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~--------------va~~Q~q~r~ea~aL~~ 161 (192)
T PF11180_consen 96 QTARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQ--------------VAARQQQARQEAQALEA 161 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 3334455555566666666677777777777777788777776655322 23333345666778889
Q ss_pred hHHHHHHHHHHHHHHHHhcC
Q 014127 304 EKATLAFRIEAVSRLLDENK 323 (430)
Q Consensus 304 Ek~AL~lqLERle~~~~e~~ 323 (430)
|+.+.+.||..++++.+...
T Consensus 162 e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 162 ERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887776543
No 152
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=61.15 E-value=2.6e+02 Score=30.80 Aligned_cols=71 Identities=17% Similarity=0.131 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 014127 244 FIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 317 (430)
Q Consensus 244 ~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~ 317 (430)
.++.++.+++.+++....+-..|++.. ..-..-|++...++.+.+-.|+.++..|.....-|-|.||.-+.
T Consensus 386 q~q~k~~k~~kel~~~~E~n~~l~knq---~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qqk 456 (493)
T KOG0804|consen 386 QLQTKLKKCQKELKEEREENKKLIKNQ---DVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQK 456 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhhh
Confidence 344555555555444443333333322 22244556666667778888888888888888888888887554
No 153
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=61.15 E-value=2.9e+02 Score=31.34 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=7.8
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q 014127 192 AELRQQTELKEVAHEELSQ 210 (430)
Q Consensus 192 aeLeqkv~~lE~~~~sLrq 210 (430)
..+++++...|....++++
T Consensus 277 ~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 277 PEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444
No 154
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=60.95 E-value=1.4e+02 Score=34.74 Aligned_cols=132 Identities=20% Similarity=0.218 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH------------HH-------HHHHhHHHHHHHHHHHHHHhhhhcccccchh-
Q 014127 163 LAKLETANADLARALAAAQKKLEMETN------------QV-------AELRQQTELKEVAHEELSQRNSNTHQTGIYL- 222 (430)
Q Consensus 163 Ea~LE~enae~akALA~~Qr~lee~~~------------rv-------aeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a- 222 (430)
..-|.-+|+.|-+=|-.+.+.|.++-. ++ -.|+-++.+....++.|+.+-+++-+.....
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~ 468 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK 468 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Confidence 556777888888888777777766411 11 2233333333333344443333221110000
Q ss_pred --------------hHHH-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 014127 223 --------------KRLA-ASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQL 287 (430)
Q Consensus 223 --------------~q~~-a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~L 287 (430)
.++. .....+.|-..++.|+...-.++..++-++...|.|.+.|.-.+.+.. +++ .||+.|
T Consensus 469 ~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrD-aEi---~RL~eL 544 (861)
T PF15254_consen 469 EENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRD-AEI---ERLREL 544 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHH-HHH---HHHHHH
Confidence 0111 234455566678888887778888888888888888888876665533 121 488888
Q ss_pred HHHHHHHHHHH
Q 014127 288 TDHLIQKQAQV 298 (430)
Q Consensus 288 Te~LIqKQtqL 298 (430)
|..|-.-++.+
T Consensus 545 tR~LQ~Sma~l 555 (861)
T PF15254_consen 545 TRTLQNSMAKL 555 (861)
T ss_pred HHHHHHHHHHH
Confidence 88886555554
No 155
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=60.58 E-value=24 Score=35.15 Aligned_cols=11 Identities=55% Similarity=0.613 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 014127 84 EKILAEKAAAK 94 (430)
Q Consensus 84 ~~~~~~~~~~~ 94 (430)
+||..||+..+
T Consensus 156 ekIKkER~ee~ 166 (244)
T PF04889_consen 156 EKIKKERAEEK 166 (244)
T ss_pred HHHHHHHHHHH
Confidence 44555554443
No 156
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=60.50 E-value=2.8 Score=48.13 Aligned_cols=144 Identities=22% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchh-------hHHHh------
Q 014127 161 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYL-------KRLAA------ 227 (430)
Q Consensus 161 aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a-------~q~~a------ 227 (430)
.|...|+..---+.+=|..++..+++....+..|+.....+..+++++...+.+.......+ .+.++
T Consensus 314 ~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~ 393 (859)
T PF01576_consen 314 QRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKV 393 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33444444444555555555555555555555555555555555555555444443221000 01111
Q ss_pred -------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHH
Q 014127 228 -------------SKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQK 294 (430)
Q Consensus 228 -------------~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqK 294 (430)
.+...++.-.++.+|..+.+.+..++...+.+..+|..+..++...-..-.+|++..+.|-..+-.=
T Consensus 394 ~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El 473 (859)
T PF01576_consen 394 EELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEEL 473 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHH
Confidence 2333333344444555555555555555566666666665555432112234444444444444333
Q ss_pred HHHHHHHHhh
Q 014127 295 QAQVEALSSE 304 (430)
Q Consensus 295 QtqLEsLssE 304 (430)
+.+|+.+.+.
T Consensus 474 ~~~leE~E~~ 483 (859)
T PF01576_consen 474 QEQLEEAEDA 483 (859)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 157
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=59.70 E-value=1.8e+02 Score=33.10 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHh
Q 014127 171 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 211 (430)
Q Consensus 171 ae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqr 211 (430)
..+-+-+..|...++.-..+...|...+..++.+...|..+
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~ 458 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESE 458 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444433
No 158
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=59.58 E-value=1.5e+02 Score=27.60 Aligned_cols=22 Identities=32% Similarity=0.270 Sum_probs=12.5
Q ss_pred HHhHHHHHHHHHHHHHHhhhhc
Q 014127 194 LRQQTELKEVAHEELSQRNSNT 215 (430)
Q Consensus 194 Leqkv~~lE~~~~sLrqrl~~~ 215 (430)
++.........+.+|+..++..
T Consensus 49 ~e~~~~~~~a~~~eLr~el~~~ 70 (177)
T PF07798_consen 49 LENQEYLFKAAIAELRSELQNS 70 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566666666666543
No 159
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=59.31 E-value=2.2e+02 Score=29.53 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 014127 241 EYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 317 (430)
Q Consensus 241 E~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~ 317 (430)
||+.|.-+...+-+....++.--+++.+++-.+..--.-||.+|.. =-.+||.|..|..-+.-.|||.+.
T Consensus 61 e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s-------~Kkqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 61 EYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNS-------CKKQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444445555555555554443323334444433 233788888888888888887765
No 160
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=59.05 E-value=1.5e+02 Score=27.34 Aligned_cols=20 Identities=10% Similarity=0.220 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014127 247 DKIIQLEDKAKKLEGNIEMT 266 (430)
Q Consensus 247 ~el~~lq~klk~lE~EIq~L 266 (430)
.++..++++++..+..++.+
T Consensus 144 ~e~~~l~~~~~~~~~~~~~~ 163 (191)
T PF04156_consen 144 KEIRELQKELQDSREEVQEL 163 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 161
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=59.02 E-value=88 Score=24.70 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 014127 245 IADKIIQLEDKAKKLEGNIEMTRKEIEDPT 274 (430)
Q Consensus 245 l~~el~~lq~klk~lE~EIq~Lr~~ls~pS 274 (430)
+..++.+|+.++.+++.+|+.+...|++|.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~ 31 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNEN 31 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 346777899999999999999999998863
No 162
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.01 E-value=3.1e+02 Score=30.97 Aligned_cols=98 Identities=16% Similarity=0.153 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 014127 114 QSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAK-------LETANADLARALAAAQKKLEM 186 (430)
Q Consensus 114 ~~l~k~l~e~~~~q~~ea~el~~~m~e~~~A~elE~~aH~aTR~qA~aREa~-------LE~enae~akALA~~Qr~lee 186 (430)
.++++.|+.+=+.+..--..==.+|..+.+.++...+ .++.---|+.. |+--..-|-+.+..+.-+-+.
T Consensus 216 ~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~ 291 (581)
T KOG0995|consen 216 SELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQH 291 (581)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH
Confidence 3445555555555543233323344444444444444 23322223333 333333444455555555555
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 014127 187 ETNQVAELRQQTELKEVAHEELSQRNSNT 215 (430)
Q Consensus 187 ~~~rvaeLeqkv~~lE~~~~sLrqrl~~~ 215 (430)
-...+..+..+++.+|.+++.|+.+....
T Consensus 292 ~~~~l~~l~~Eie~kEeE~e~lq~~~d~L 320 (581)
T KOG0995|consen 292 MEKKLEMLKSEIEEKEEEIEKLQKENDEL 320 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666554444
No 163
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=58.45 E-value=2.8e+02 Score=30.24 Aligned_cols=77 Identities=25% Similarity=0.283 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 014127 97 DAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMET---MDAFELEKQRHNNTRMEALQLLAKLETANADL 173 (430)
Q Consensus 97 ~~i~ere~~~arl~~ek~~l~k~l~e~~~~q~~ea~el~~~m~e~---~~A~elE~~aH~aTR~qA~aREa~LE~enae~ 173 (430)
.+=-||+..-.++...+..+-|-+-+-+.-++ .+..||+-+.-. -.-++.|+++-.+.+-+.++--..|..+--+|
T Consensus 113 ~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~-Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L 191 (499)
T COG4372 113 KARQEREAVRQELAAARQNLAKAQQELARLTK-QAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDL 191 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467888888888888888888888888777 577888754322 22377777777777777776655665555554
Q ss_pred H
Q 014127 174 A 174 (430)
Q Consensus 174 a 174 (430)
.
T Consensus 192 ~ 192 (499)
T COG4372 192 K 192 (499)
T ss_pred H
Confidence 3
No 164
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=57.76 E-value=79 Score=35.12 Aligned_cols=75 Identities=13% Similarity=0.148 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 014127 242 YTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 316 (430)
Q Consensus 242 ~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle 316 (430)
+..++.++..++.++..+|++|..+...+..|..-...-.+++..|.+.+-..++++|.+..+=-.|.-.||-+.
T Consensus 558 ~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 558 TQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666788888888888888888887663211111236778888888888888888877777776666554
No 165
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=57.38 E-value=1.7e+02 Score=27.53 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccch-h-hHHH----hhhhhhHHHHHHHHHHHHHHHHH
Q 014127 176 ALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIY-L-KRLA----ASKGVEFEREILEAEYTFIADKI 249 (430)
Q Consensus 176 ALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~-a-~q~~----a~~~~EaE~e~l~qE~~~l~~el 249 (430)
-...+++.|++-..++...=.+|..++......+.+|....+.-.. . .++- .+........+.+++-..|...-
T Consensus 28 E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rR 107 (159)
T PF05384_consen 28 EYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERR 107 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666777777777777788888778887776543110 1 1111 12222233333333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 014127 250 IQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDH 290 (430)
Q Consensus 250 ~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~ 290 (430)
..|+-.++.+..-|++...-+++-+.+-.=|...|..+++.
T Consensus 108 D~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~ 148 (159)
T PF05384_consen 108 DELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQ 148 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45555555566666655555555444444445555555444
No 166
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=57.20 E-value=99 Score=32.83 Aligned_cols=77 Identities=18% Similarity=0.274 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 014127 238 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 315 (430)
Q Consensus 238 l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERl 315 (430)
++.++..+.+++..++.++..+++.|..+.+.-..+. ...+....+..+...+.....++..|..+...|.-++++.
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~-~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGK-LPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666777777777777777777777766433221 2335666777777777777777777777777777777665
No 167
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=56.92 E-value=2.4e+02 Score=29.08 Aligned_cols=27 Identities=26% Similarity=0.565 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 014127 247 DKIIQLEDKAKKLEGNIEMTRKEIEDP 273 (430)
Q Consensus 247 ~el~~lq~klk~lE~EIq~Lr~~ls~p 273 (430)
..+.+|++++.++.++++--.++-+.|
T Consensus 164 esvqRLkdEardlrqelavr~kq~E~p 190 (333)
T KOG1853|consen 164 ESVQRLKDEARDLRQELAVRTKQTERP 190 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 456678888888888887655555443
No 168
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=56.31 E-value=1.9e+02 Score=30.28 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhccCC
Q 014127 366 QLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHSQS 409 (430)
Q Consensus 366 ~lD~~~lrl~rfLrr~p~aRl~fi~Y~v~LHlwV~~vL~~~s~~ 409 (430)
--+++=+.++..+.--|.+=.+++=|-+.-.++-|.++|+|.+.
T Consensus 122 EYEkFKl~~tii~l~~~~~~~~~~~~r~~d~~~~f~lvwyY~tL 165 (330)
T PF07851_consen 122 EYEKFKLYLTIILLLFAVALLFLLNYRVLDQLFNFLLVWYYCTL 165 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 34445566666666566666666667777777777777777654
No 169
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=55.43 E-value=1.8e+02 Score=27.13 Aligned_cols=102 Identities=25% Similarity=0.278 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHh--hhhhhHHHH
Q 014127 160 LQLLAKLETANADLARALAAAQKKLEME-TNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAA--SKGVEFERE 236 (430)
Q Consensus 160 ~aREa~LE~enae~akALA~~Qr~lee~-~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a--~~~~EaE~e 236 (430)
++.-.+++...-.+-.+++.....+.-- ....+.++.+.+.+..+.+.|++++..-- +.+.+ ..+...|+.
T Consensus 43 ~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei------~~l~a~~klD~n~eK~ 116 (177)
T PF07798_consen 43 LVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEI------NKLRAEVKLDLNLEKG 116 (177)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhHH
Confidence 3444566667777777777777776653 35677777777777777777777654421 11111 122333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014127 237 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 270 (430)
Q Consensus 237 ~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~l 270 (430)
..+.+...+..++..+..++ ..+|..||.++
T Consensus 117 ~~r~e~~~~~~ki~e~~~ki---~~ei~~lr~~i 147 (177)
T PF07798_consen 117 RIREEQAKQELKIQELNNKI---DTEIANLRTEI 147 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 55555556666655444442 33444444443
No 170
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=55.06 E-value=1.6e+02 Score=28.01 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=12.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhc
Q 014127 190 QVAELRQQTELKEVAHEELSQRNSNT 215 (430)
Q Consensus 190 rvaeLeqkv~~lE~~~~sLrqrl~~~ 215 (430)
++..|..+++.++....+|..++..+
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444454444444
No 171
>PRK02119 hypothetical protein; Provisional
Probab=54.99 E-value=35 Score=28.00 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 014127 282 RRLGQLTDHLIQKQAQVEALSSEKATLAFRI 312 (430)
Q Consensus 282 ~RL~~LTe~LIqKQtqLEsLssEk~AL~lqL 312 (430)
.-|..|.+.++.=|.+|+.|......|.-||
T Consensus 23 ~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 23 NLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666655554444443333
No 172
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=54.63 E-value=2.3e+02 Score=30.85 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 014127 159 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 215 (430)
Q Consensus 159 A~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~ 215 (430)
--+|..+|.++.++.+++-.+.--.+.........+.-++..+|.++..|+.+....
T Consensus 11 ~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l 67 (459)
T KOG0288|consen 11 NDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQL 67 (459)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777777776655555555556667778888888888777764443
No 173
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=53.82 E-value=2.2e+02 Score=28.52 Aligned_cols=59 Identities=20% Similarity=0.194 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 014127 157 MEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 215 (430)
Q Consensus 157 ~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~ 215 (430)
.+.+..-..++..+-.+.++|..-++.++....+...++.+...++.....+.+.++..
T Consensus 179 ~~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~ 237 (297)
T PF02841_consen 179 QEFLQSKESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQ 237 (297)
T ss_dssp HHHHHHCHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666667777777777777766666666666666555555554444444
No 174
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=53.75 E-value=2.4e+02 Score=28.03 Aligned_cols=98 Identities=21% Similarity=0.191 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHH
Q 014127 166 LETANADLARALAAAQKK---LEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEY 242 (430)
Q Consensus 166 LE~enae~akALA~~Qr~---lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~ 242 (430)
|-....+|.+-.+.+... ++.+...+.++..+...|..+....-..|..+++.......++... +.|+
T Consensus 6 ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa--~~er------- 76 (230)
T PF10146_consen 6 IRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQA--ESER------- 76 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-------
Confidence 333444444444444333 3334556777777777777777777777777776655554444222 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hCC
Q 014127 243 TFIADKIIQLEDKAKKLEGNIEMTRKE-IED 272 (430)
Q Consensus 243 ~~l~~el~~lq~klk~lE~EIq~Lr~~-ls~ 272 (430)
....+.+.++.+++..+..+|..+|.+ +.-
T Consensus 77 ~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl 107 (230)
T PF10146_consen 77 NKRQEKIQRLYEEYKPLKDEINELRKEYLGL 107 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 234466777888888888899999998 654
No 175
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=53.52 E-value=2.1e+02 Score=29.95 Aligned_cols=141 Identities=15% Similarity=0.182 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhh--HHH-hh--hhhhHHHHHHHHHHHHHHHHH
Q 014127 175 RALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLK--RLA-AS--KGVEFEREILEAEYTFIADKI 249 (430)
Q Consensus 175 kALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~--q~~-a~--~~~EaE~e~l~qE~~~l~~el 249 (430)
-||--+-+.|+.=..+.+++.-.++-+...+..|+.......+....-+ ... .. ...-.-....+.+-..|..++
T Consensus 9 eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev 88 (319)
T PF09789_consen 9 EALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEV 88 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 4677777777776777776666665566666666666555443321111 111 01 001111233455556777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 014127 250 IQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRL-----GQLTDHLIQKQAQVEALSSEKATLAFRIEAV 315 (430)
Q Consensus 250 ~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL-----~~LTe~LIqKQtqLEsLssEk~AL~lqLERl 315 (430)
..|+.++..+..+|..||..+...-+.-..+..+- ..|..+|-.=+.+.+.|..+..++.=..|.+
T Consensus 89 ~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl 159 (319)
T PF09789_consen 89 EELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEEL 159 (319)
T ss_pred HHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999998866432222333332 2344444444555555555555555555544
No 176
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=53.03 E-value=2.8e+02 Score=28.64 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhHHhh
Q 014127 97 DAIKERENMVARLEGE 112 (430)
Q Consensus 97 ~~i~ere~~~arl~~e 112 (430)
.-|-+--.++.-+|.+
T Consensus 77 ~~I~egr~~~~~~E~e 92 (312)
T smart00787 77 KYISEGRDLFKEIEEE 92 (312)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555544
No 177
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=52.11 E-value=3.1e+02 Score=28.98 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014127 249 IIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSS 303 (430)
Q Consensus 249 l~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLss 303 (430)
+..++.+...+++++..++.++..-. ..+.+|..|...+=.+++..|.+..
T Consensus 344 ~~~l~~~~~~L~~~~~~l~~~~~~~~----~~~~~l~~L~Re~~~~r~~ye~lL~ 394 (458)
T COG3206 344 LALLEQQEAALEKELAQLKGRLSKLP----KLQVQLRELEREAEAARSLYETLLQ 394 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhch----HhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666667777777777666533 4555666666666666666665544
No 178
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=52.00 E-value=98 Score=24.85 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHH
Q 014127 160 LQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEV 203 (430)
Q Consensus 160 ~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~ 203 (430)
..|..+||...+=....|..+...+-.++.+++.|...+..+..
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666665555555555555555555444444333
No 179
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=51.86 E-value=4.4e+02 Score=30.63 Aligned_cols=59 Identities=24% Similarity=0.349 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 014127 257 KKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 315 (430)
Q Consensus 257 k~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERl 315 (430)
..+...++.+...+........++..++..+...+-..+..++.+......+..++..+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 443 (908)
T COG0419 385 KQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQL 443 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555554444443333455555555555555555666666666666665555554
No 180
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=51.55 E-value=5.6e+02 Score=31.73 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 014127 159 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 215 (430)
Q Consensus 159 A~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~ 215 (430)
.+.=...|.........-+..+|++++--.-+|.+++.++...+...+.++-.+...
T Consensus 207 ~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el 263 (1294)
T KOG0962|consen 207 ELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKEL 263 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344445555666666677788888888888888888888877777776666554444
No 181
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=51.05 E-value=56 Score=25.56 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 142 MDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQK 182 (430)
Q Consensus 142 ~~A~elE~~aH~aTR~qA~aREa~LE~enae~akALA~~Qr 182 (430)
..-+-.|+.+++..+..|-.|..+|+.+|..|-.-|...|-
T Consensus 10 e~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 10 ERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred HHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456677899999999999999999999999888877653
No 182
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=50.47 E-value=4.6e+02 Score=30.45 Aligned_cols=153 Identities=17% Similarity=0.201 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchh---------------hHHHhhhhh
Q 014127 167 ETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYL---------------KRLAASKGV 231 (430)
Q Consensus 167 E~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a---------------~q~~a~~~~ 231 (430)
-+.+..|.+.+..+...++.+..+-.+|-.++..+..+-..+.++..++-....-. .++. ...
T Consensus 463 ~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie--~Le 540 (786)
T PF05483_consen 463 KESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIE--NLE 540 (786)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 34455666666666666666666666666666666666666666655553221000 0100 001
Q ss_pred hHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 014127 232 EFEREILEAEYTFIADKII-------------------------QLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQ 286 (430)
Q Consensus 232 EaE~e~l~qE~~~l~~el~-------------------------~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~ 286 (430)
+. -..++-|+.++++++. ....+++-++..+.-||+++.+++-...+|...=..
T Consensus 541 e~-~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~ 619 (786)
T PF05483_consen 541 ET-NTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKA 619 (786)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11 1123334444443332 233334556677888888888776556667777777
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Q 014127 287 LTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDEN 322 (430)
Q Consensus 287 LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~e~ 322 (430)
|--.....=+++-.+-.-.+.|...++.+++.+.+.
T Consensus 620 LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~ 655 (786)
T PF05483_consen 620 LKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEE 655 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 777777777777788888999999999988876653
No 183
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=49.18 E-value=1.5e+02 Score=24.33 Aligned_cols=68 Identities=18% Similarity=0.252 Sum_probs=32.3
Q ss_pred HHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014127 194 LRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 270 (430)
Q Consensus 194 Leqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~l 270 (430)
+..+++.++.....|+.+.++....-...+..+- -+++.+..++..+..+..++...+.+|+.|+..+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IK---------KLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIK---------KLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666666665555433111122221 1222333334455555555555666666555444
No 184
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=49.17 E-value=4.4e+02 Score=29.76 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Q 014127 293 QKQAQVEALSSEKATLAFRIEAVS 316 (430)
Q Consensus 293 qKQtqLEsLssEk~AL~lqLERle 316 (430)
.++.++..|..|....+-.++.+-
T Consensus 373 ~~~~e~~~L~Re~~~~~~~Y~~ll 396 (754)
T TIGR01005 373 EQQVDLDALQRDAAAKRQLYESYL 396 (754)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555543
No 185
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=47.90 E-value=2.9e+02 Score=27.32 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=6.6
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 014127 192 AELRQQTELKEVAHEELS 209 (430)
Q Consensus 192 aeLeqkv~~lE~~~~sLr 209 (430)
-.|+.++..+......|.
T Consensus 55 k~~e~~~~~~~~~~~k~e 72 (225)
T COG1842 55 KQLERKLEEAQARAEKLE 72 (225)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 186
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=47.47 E-value=71 Score=31.79 Aligned_cols=51 Identities=18% Similarity=0.280 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHh
Q 014127 161 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 211 (430)
Q Consensus 161 aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqr 211 (430)
.|...||.....-..++..+|+.|+.-+.+++.|+-+++.+.+..+.++++
T Consensus 40 ~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~r 90 (263)
T PRK10803 40 DRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 90 (263)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 566667766666677778888888888888888888887777777766654
No 187
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=46.52 E-value=18 Score=37.69 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=24.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014127 191 VAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 270 (430)
Q Consensus 191 vaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~l 270 (430)
+..+.+.+-.+|..+.+|+..+-.+..+...++.-+ ........-.+.++..+..++..++..+..+...|..|...+
T Consensus 30 Ls~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L--~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~l 107 (326)
T PF04582_consen 30 LSPIRERLSALESSVASLSDSVSSLSSTISDLSSDL--QDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTL 107 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhh
Confidence 344555666666666666666555555432221111 001111111234455666777778888888888888887777
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Q 014127 271 EDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDEN 322 (430)
Q Consensus 271 s~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~e~ 322 (430)
+.....-..|...+..++ +.+-.|.+..+++.+++-.|++.....
T Consensus 108 s~h~ssIS~Lqs~v~~ls-------TdvsNLksdVSt~aL~ItdLe~RV~~L 152 (326)
T PF04582_consen 108 SDHSSSISDLQSSVSALS-------TDVSNLKSDVSTQALNITDLESRVKAL 152 (326)
T ss_dssp ----------HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHhhhhhh-------hhhhhhhhhhhhhcchHhhHHHHHHHH
Confidence 776655667777777665 566777777788888777777655543
No 188
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=46.36 E-value=3.1e+02 Score=29.63 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014127 241 EYTFIADKIIQLEDKAKKLEGNIEMTRKEI 270 (430)
Q Consensus 241 E~~~l~~el~~lq~klk~lE~EIq~Lr~~l 270 (430)
++..+...+..+..++..++++|+.+++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 139 EIERLLTEDREAERRIRELEKQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555566666666666665554
No 189
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=45.90 E-value=4.3e+02 Score=28.71 Aligned_cols=54 Identities=30% Similarity=0.353 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 014127 241 EYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQ 297 (430)
Q Consensus 241 E~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtq 297 (430)
.+..+.+.+.+++++++.+ ||.++.-+++.-+...+|++++..|..-|++=|..
T Consensus 231 ~i~ei~~sl~~l~d~lk~~---~q~~~~~~enr~~e~m~l~k~~nslkp~l~~lr~~ 284 (464)
T KOG4637|consen 231 RIREIHDSLTRLEDDLKAL---IQALRSNSENRLCELMELDKAMNSLKPDLIQLRKI 284 (464)
T ss_pred HHHHHHHHHHhHHHHHHHH---HHHHhhhhhhhhHHHHHHHHHHhhcCchHHHHHHH
Confidence 3445667777777776665 88888777776667889999999999888876543
No 190
>PRK02793 phi X174 lysis protein; Provisional
Probab=45.84 E-value=1.6e+02 Score=24.05 Aligned_cols=44 Identities=20% Similarity=0.153 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Q 014127 158 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELK 201 (430)
Q Consensus 158 qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~l 201 (430)
....|..+||...+=....|..+..-+-.++.+++.|..++..+
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777666666666555555555555555554444333
No 191
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.77 E-value=25 Score=36.45 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=30.5
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhc
Q 014127 372 LAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSH 406 (430)
Q Consensus 372 lrl~rfLrr~p~aRl~fi~Y~v~LHlwV~~vL~~~ 406 (430)
=.+++..+.+...|.|.+|.+|++-+.++|+.|+|
T Consensus 281 e~irka~~~~~~~r~~~lf~llvlsf~lLFldwy~ 315 (316)
T KOG3894|consen 281 EEIRKAKRNNGGLRVFLLFFLLVLSFSLLFLDWYY 315 (316)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcC
Confidence 34668888999999999999999999999988876
No 192
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=45.56 E-value=58 Score=33.46 Aligned_cols=53 Identities=21% Similarity=0.219 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHH
Q 014127 174 ARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLA 226 (430)
Q Consensus 174 akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~ 226 (430)
...|..++..+..-..++..|..++.....+...|..++..++.+...+..++
T Consensus 234 ~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li 286 (344)
T PF12777_consen 234 EEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLI 286 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Confidence 33333333333333334444444443333344444444444433333333333
No 193
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=45.51 E-value=2.7e+02 Score=26.51 Aligned_cols=63 Identities=25% Similarity=0.346 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 238 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEAL 301 (430)
Q Consensus 238 l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsL 301 (430)
++..+..+++++..++.++..++..|+.++.. ..+|.....+-.+|..|...+-..+.+++..
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~-r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKKG-REESEEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566677777777777777777766332 2235556667777777777777777777643
No 194
>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=45.11 E-value=17 Score=31.30 Aligned_cols=17 Identities=18% Similarity=0.381 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014127 386 LWSLVYLVCLHLWVIYI 402 (430)
Q Consensus 386 l~fi~Y~v~LHlwV~~v 402 (430)
+.||+.+++||+|-=|.
T Consensus 68 vgFIasV~~LHi~gK~~ 84 (88)
T KOG3457|consen 68 VGFIASVFALHIWGKLT 84 (88)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 57999999999996443
No 195
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=44.95 E-value=1.4e+02 Score=27.83 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 014127 239 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 272 (430)
Q Consensus 239 ~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~ 272 (430)
+++.....+++..++.++++.+.+++.|++|.++
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455567777777777788888888877654
No 196
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=44.94 E-value=95 Score=27.33 Aligned_cols=46 Identities=30% Similarity=0.372 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Q 014127 277 EIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDEN 322 (430)
Q Consensus 277 e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~e~ 322 (430)
-.+||.+|..|.+.+-.=..++..|.-|++.|++.-+.|...+.+.
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999999998888999999999999999999988766654
No 197
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=44.93 E-value=6.9e+02 Score=30.84 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHhhHHHH
Q 014127 75 EREERRKLKEKILAEKAAAKAGDAIKERENMVARLEGEKQSL 116 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~i~ere~~~arl~~ek~~l 116 (430)
-|++.|.+|-..+.++++.-. +.|.+-++-.+.|++....|
T Consensus 735 aR~~~R~~ri~el~~~IaeL~-~~i~~l~~~l~~l~~r~~~L 775 (1353)
T TIGR02680 735 ARERARLRRIAELDARLAAVD-DELAELARELRALGARQRAL 775 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 344555555333433333221 33333333344443333333
No 198
>PRK03918 chromosome segregation protein; Provisional
Probab=44.88 E-value=5.2e+02 Score=29.39 Aligned_cols=43 Identities=14% Similarity=0.324 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 014127 279 ELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDE 321 (430)
Q Consensus 279 ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~e 321 (430)
+|...+..|....-..+..+..+..++..+.-.+..++..+..
T Consensus 388 ~l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~ 430 (880)
T PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEE 430 (880)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666555566666777777777766666666654443
No 199
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=44.81 E-value=6.5e+02 Score=30.50 Aligned_cols=82 Identities=23% Similarity=0.312 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 014127 235 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTE-------VEIELKRRLGQLTDHLIQKQAQVEALSSEKAT 307 (430)
Q Consensus 235 ~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~-------~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~A 307 (430)
...++.++..+..++.-..++.+-||.++..++..++..+. .-.+.=..|...-+.++.|+.++|.+.....-
T Consensus 257 ~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~ 336 (1072)
T KOG0979|consen 257 KDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEK 336 (1072)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554555555555555555555544332 12222233455556778888888888777776
Q ss_pred HHHHHHHHH
Q 014127 308 LAFRIEAVS 316 (430)
Q Consensus 308 L~lqLERle 316 (430)
.+-+++++.
T Consensus 337 rq~~i~~~~ 345 (1072)
T KOG0979|consen 337 RQKRIEKAK 345 (1072)
T ss_pred HHHHHHHHH
Confidence 666776654
No 200
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=44.65 E-value=25 Score=39.57 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 014127 188 TNQVAELRQQTELKEVAHEELSQRNSNTH 216 (430)
Q Consensus 188 ~~rvaeLeqkv~~lE~~~~sLrqrl~~~~ 216 (430)
...+.-|+.+..+...+++.||..|....
T Consensus 398 ~~~~~RLerq~~L~~kE~d~LR~~L~syd 426 (722)
T PF05557_consen 398 KKLIRRLERQKALATKERDYLRAQLKSYD 426 (722)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566666666677777777666653
No 201
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=44.63 E-value=81 Score=28.36 Aligned_cols=44 Identities=23% Similarity=0.260 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 014127 277 EIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLD 320 (430)
Q Consensus 277 e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~ 320 (430)
-.+||.+|..|...|=.=-+++.+|..|+++|++..+++...+-
T Consensus 10 v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~ 53 (114)
T COG4467 10 VDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLG 53 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhC
Confidence 35788888888888777778899999999999999999976543
No 202
>PRK01203 prefoldin subunit alpha; Provisional
Probab=44.61 E-value=2.5e+02 Score=25.72 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=57.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------CCCC-------------
Q 014127 229 KGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI---------------------EDPT------------- 274 (430)
Q Consensus 229 ~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~l---------------------s~pS------------- 274 (430)
...+++...+++++..+++++..++....++..-|..+...- ..|.
T Consensus 3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VE 82 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIA 82 (130)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEE
Confidence 345566778888888888888888777777777777665510 0010
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 014127 275 ----EVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLA 309 (430)
Q Consensus 275 ----~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~ 309 (430)
..-..|..++..|...+-.|+.+++++..-.+.|.
T Consensus 83 K~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 83 EERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01445788888888888999999998888887776
No 203
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=44.39 E-value=4.1e+02 Score=30.43 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=21.4
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhccCCC
Q 014127 374 GVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHSQSS 410 (430)
Q Consensus 374 l~rfLrr~p~aRl~fi~Y~v~LHlwV~~vL~~~s~~s 410 (430)
-..|-.-+|+.+.++=.|-|| +|.|+.+.
T Consensus 375 ~~VF~e~~~lv~S~lDGYnVC--------IFAYGQTG 403 (670)
T KOG0239|consen 375 DDVFEEVSPLVQSALDGYNVC--------IFAYGQTG 403 (670)
T ss_pred HHHHHHHHHHHHHHhcCccee--------EEEecccC
Confidence 345556689999999999888 66666653
No 204
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=44.06 E-value=35 Score=26.52 Aligned_cols=30 Identities=27% Similarity=0.670 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHH--HHHhccCCCccccc
Q 014127 386 LWSLVYLVCLHLWVIY--ILLSHSQSSAEARS 415 (430)
Q Consensus 386 l~fi~Y~v~LHlwV~~--vL~~~s~~s~~~rs 415 (430)
+.|+++|+..-+|.++ |||..++.++++|.
T Consensus 17 IC~Fl~~~~~F~~F~~Kqilfr~~~~snear~ 48 (54)
T PF06716_consen 17 ICLFLFCLVVFIWFVYKQILFRNNPQSNEARF 48 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCcchhhc
Confidence 4555566666666665 46666676666654
No 205
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=44.00 E-value=66 Score=35.23 Aligned_cols=54 Identities=20% Similarity=0.311 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 014127 249 IIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 316 (430)
Q Consensus 249 l~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle 316 (430)
+...|.+++.+|++|+.+|.++..-+....++ |..|+.+.+|+..|.-|++.+.
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq~~dl--------------e~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQRGDD--------------QRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH--------------HHHHHHHHHHHHHHHHHHHhhh
Confidence 34456666677777777754433111111123 5556677788888888876543
No 206
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.97 E-value=1.2e+02 Score=22.77 Aligned_cols=40 Identities=18% Similarity=0.360 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014127 231 VEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 270 (430)
Q Consensus 231 ~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~l 270 (430)
.|.+-++++..|..|..+...|+.+...+..+|..|+..+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455577888888888888888888888888888776554
No 207
>PRK09343 prefoldin subunit beta; Provisional
Probab=43.59 E-value=2.3e+02 Score=25.04 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=12.1
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHHHHHH
Q 014127 181 QKKLEMETNQVAELRQQTELKEVAHEELSQ 210 (430)
Q Consensus 181 Qr~lee~~~rvaeLeqkv~~lE~~~~sLrq 210 (430)
+..++....+.-.+.+++.........|..
T Consensus 6 ~~~~q~~~~~~q~lq~~l~~~~~q~~~le~ 35 (121)
T PRK09343 6 PPEVQAQLAQLQQLQQQLERLLQQKSQIDL 35 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333333333
No 208
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=43.38 E-value=5.1e+02 Score=28.91 Aligned_cols=70 Identities=30% Similarity=0.406 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-CCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 014127 246 ADKIIQLEDKAKKLEGNIEMTRKEIED-PTE-VEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 315 (430)
Q Consensus 246 ~~el~~lq~klk~lE~EIq~Lr~~ls~-pS~-~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERl 315 (430)
...+..+.++++.++.++..+.+++.. |+. .-..|..++..+...|-.-+..++.+..+...+.-+++.+
T Consensus 390 ~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 461 (650)
T TIGR03185 390 QDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEAL 461 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888888999989888865 552 3445555555555555544444444444444444444443
No 209
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=43.14 E-value=6.5e+02 Score=30.08 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=11.7
Q ss_pred CCCCCCcccccccccccccc
Q 014127 2 VSVPGKVDAFSDVKIGMNDV 21 (430)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~ 21 (430)
|++|.-...-||+.- .+|+
T Consensus 252 I~IP~LP~~~Pnf~~-~sdl 270 (980)
T KOG0980|consen 252 IQIPTLPEDAPNFLR-QSDL 270 (980)
T ss_pred hcCCCCCCCCccccc-ccch
Confidence 567777766677653 3444
No 210
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=43.09 E-value=21 Score=24.80 Aligned_cols=12 Identities=58% Similarity=0.833 Sum_probs=6.6
Q ss_pred CcchHHHHHHHH
Q 014127 68 SESESEREREER 79 (430)
Q Consensus 68 ~~~~~~~~~~~~ 79 (430)
+|.|-+|.|++|
T Consensus 9 ed~ea~r~reeR 20 (28)
T PF10587_consen 9 EDEEAERIREER 20 (28)
T ss_pred ccHHHHHHHHHH
Confidence 455556555554
No 211
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=42.89 E-value=4.1e+02 Score=27.64 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 014127 276 VEIELKRRLGQLTDHLIQKQAQVEALSSEKATLA 309 (430)
Q Consensus 276 ~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~ 309 (430)
...-.+.+|..|-+..-..=..--+|.+|.-+|.
T Consensus 156 ~q~~~~sk~e~L~ekynkeveerkrle~e~k~lq 189 (307)
T PF10481_consen 156 SQYYSDSKYEELQEKYNKEVEERKRLEAEVKALQ 189 (307)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 4455667777776654333222233444444443
No 212
>KOG1821 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.84 E-value=19 Score=38.88 Aligned_cols=45 Identities=24% Similarity=0.401 Sum_probs=29.8
Q ss_pred ccccccccccccccccccccCCCCCCCCCCCCCCCCCCCCcchHH
Q 014127 29 IRGNHKSNAGIRASVLNDSKRGSSSTSEDGSDSNSDSSSSESESE 73 (430)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (430)
-+..|..|.|..|+-.+|.++||+-.++....+-.|+.+||+.+-
T Consensus 403 rKkkhNanggfNSsPpndkakggsipkSird~d~ddg~dSddd~s 447 (662)
T KOG1821|consen 403 RKKKHNANGGFNSSPPNDKAKGGSIPKSIRDNDKDDGCDSDDDSS 447 (662)
T ss_pred hhccccCCCCcCCCCCcccccCCCCCcchhhcccccCCCCCCcch
Confidence 357888999999999999988887666544433333334444443
No 213
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=41.95 E-value=5.7e+02 Score=29.05 Aligned_cols=24 Identities=33% Similarity=0.185 Sum_probs=17.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHH
Q 014127 297 QVEALSSEKATLAFRIEAVSRLLD 320 (430)
Q Consensus 297 qLEsLssEk~AL~lqLERle~~~~ 320 (430)
|+|.+.++.+..--+.++..+.++
T Consensus 562 q~e~~~~~~~~~~~~~~~~~~~~k 585 (607)
T KOG0240|consen 562 QLEVLQSESNTKMEQEEKELRPCK 585 (607)
T ss_pred ehhhhhhHHHHHHHHHHHhhHHHH
Confidence 888888888888888777544443
No 214
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=41.53 E-value=59 Score=31.85 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=9.2
Q ss_pred HHHHhhHHHHHHHHHH
Q 014127 299 EALSSEKATLAFRIEA 314 (430)
Q Consensus 299 EsLssEk~AL~lqLER 314 (430)
|.|+.|.-.|--+|..
T Consensus 166 E~L~~em~~La~~LK~ 181 (251)
T PF09753_consen 166 EDLTEEMLSLARQLKE 181 (251)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666555554
No 215
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=40.97 E-value=2.9e+02 Score=25.32 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 014127 247 DKIIQLEDKAKKLEGNIEMTRKEIEDPT 274 (430)
Q Consensus 247 ~el~~lq~klk~lE~EIq~Lr~~ls~pS 274 (430)
..+..++.++..++..++.|+..-..-|
T Consensus 116 ~~i~~l~~e~~~l~~kL~~l~~~~~~vs 143 (169)
T PF07106_consen 116 EEIEELEEEIEELEEKLEKLRSGSKPVS 143 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4555566667777777777766333333
No 216
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=40.83 E-value=3.9e+02 Score=28.97 Aligned_cols=12 Identities=42% Similarity=0.310 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHH
Q 014127 158 EALQLLAKLETA 169 (430)
Q Consensus 158 qA~aREa~LE~e 169 (430)
+|++|+++|+++
T Consensus 328 EAqareaklqae 339 (442)
T PF06637_consen 328 EAQAREAKLQAE 339 (442)
T ss_pred HHHHHHHHHHHH
Confidence 566666666654
No 217
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=39.85 E-value=3.1e+02 Score=33.01 Aligned_cols=77 Identities=26% Similarity=0.359 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 014127 71 ESEREREERRKLKEKILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEK 149 (430)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ere~~~arl~~ek~~l~k~l~e~~~~q~~ea~el~~~m~e~~~A~elE~ 149 (430)
|..+++..+|.+.++.+.|++....-..+ |||.+ .|++-|+...|.+-.||.++...|-+.++.-=-|-++.++.|+
T Consensus 443 e~~er~~~er~~~E~er~er~e~e~~er~-Erer~-er~erer~Erer~erEr~erer~erer~~r~e~er~~r~e~e~ 519 (1021)
T PTZ00266 443 ENAHRKALEMKILEKKRIERLEREERERL-ERERM-ERIERERLERERLERERLERDRLERDRLDRLERERVDRLERDR 519 (1021)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 218
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=39.81 E-value=6e+02 Score=28.68 Aligned_cols=22 Identities=5% Similarity=0.068 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 014127 133 ELQTSMMETMDAFELEKQRHNN 154 (430)
Q Consensus 133 el~~~m~e~~~A~elE~~aH~a 154 (430)
+++..+-++-.+++.=+..|..
T Consensus 205 ~l~~~l~~aE~~l~~fk~~~~l 226 (754)
T TIGR01005 205 DLSKQSRDAEAEVAAYRAQSDL 226 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 3444444444444444555544
No 219
>PRK11519 tyrosine kinase; Provisional
Probab=39.74 E-value=6.1e+02 Score=28.77 Aligned_cols=21 Identities=10% Similarity=0.012 Sum_probs=8.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHH
Q 014127 294 KQAQVEALSSEKATLAFRIEA 314 (430)
Q Consensus 294 KQtqLEsLssEk~AL~lqLER 314 (430)
+|.++..|..+....+--++.
T Consensus 368 ~e~~~~~L~Re~~~~~~lY~~ 388 (719)
T PRK11519 368 TQQEIVRLTRDVESGQQVYMQ 388 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 220
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=39.59 E-value=2.7e+02 Score=26.57 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=6.6
Q ss_pred HHHHHHHhHHhh
Q 014127 101 ERENMVARLEGE 112 (430)
Q Consensus 101 ere~~~arl~~e 112 (430)
||+.+..|+-.+
T Consensus 81 ERGlLL~rvrde 92 (189)
T PF10211_consen 81 ERGLLLLRVRDE 92 (189)
T ss_pred HHhHHHHHHHHH
Confidence 566655555444
No 221
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=39.09 E-value=3.6e+02 Score=25.93 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchh----hHHHhhhhhhH
Q 014127 158 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYL----KRLAASKGVEF 233 (430)
Q Consensus 158 qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a----~q~~a~~~~Ea 233 (430)
.|..-..+|+.....|.+-=. .+..-..++..+++++..++.+.+.|.++...++++...+ +..+..-.-.+
T Consensus 66 ~a~~e~~eL~k~L~~y~kdK~----~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~ 141 (201)
T PF13851_consen 66 KAEEEVEELRKQLKNYEKDKQ----SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKT 141 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444443221 1222234455556666666666666666666555443222 11111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 234 EREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEAL 301 (430)
Q Consensus 234 E~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsL 301 (430)
....+ .|+.++..+.+.+...+.++...-.. .++.|. .+..=-+.|-+.|-.|.+.|..|
T Consensus 142 ~~kn~-----lLEkKl~~l~~~lE~keaqL~evl~~-~nldp~--~~~~v~~~l~~~l~~KN~~I~~L 201 (201)
T PF13851_consen 142 GLKNL-----LLEKKLQALSEQLEKKEAQLNEVLAA-ANLDPA--ALSQVSKKLEDVLDSKNQTIKDL 201 (201)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHH--HHHHHHHHHHHHHHHHHHHHhhC
Confidence 11111 34455555555555555555543222 233332 23333345566677777776643
No 222
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.04 E-value=5.7e+02 Score=28.17 Aligned_cols=171 Identities=23% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHH
Q 014127 90 KAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQR-HNNTRMEALQLLAKLET 168 (430)
Q Consensus 90 ~~~~~~~~~i~ere~~~arl~~ek~~l~k~l~e~~~~q~~ea~el~~~m~e~~~A~elE~~a-H~aTR~qA~aREa~LE~ 168 (430)
++-+.-+.|..|=|||-|=-.--.-.-..-+..--++-.-|..-||..|.++....+-+-.. -.--|.+-+.-+.+++.
T Consensus 42 ~lrtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k~~~~~ye~q~~~~leqertq~qq~~e~~er 121 (542)
T KOG0993|consen 42 HLRTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQASQKSPNPTYECQMCQNLEQERTQLQQNEEKLER 121 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH--HHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHH
Q 014127 169 ANADLARALAA--AQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIA 246 (430)
Q Consensus 169 enae~akALA~--~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~ 246 (430)
+.+++-.-|++ .+-+|+-+..++-+..+|+-.+=..+.
T Consensus 122 Ev~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pme---------------------------------------- 161 (542)
T KOG0993|consen 122 EVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPME---------------------------------------- 161 (542)
T ss_pred HHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHH----------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 014127 247 DKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 315 (430)
Q Consensus 247 ~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERl 315 (430)
.+|..+++++-+.|+.|+-+.+...++.+ -||-.|+.|- |+.++.---.+||.+
T Consensus 162 keI~elk~kl~~aE~~i~El~k~~~h~a~-------slh~~t~lL~--------L~RD~s~~l~~leel 215 (542)
T KOG0993|consen 162 KEINELKKKLAKAEQRIDELSKAKHHKAE-------SLHVFTDLLN--------LARDKSEQLRQLEEL 215 (542)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhhhcccch-------HHHHHHHHHH--------HhcCCchhhhHHHHh
No 223
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=38.80 E-value=1.4e+02 Score=25.20 Aligned_cols=75 Identities=24% Similarity=0.305 Sum_probs=36.6
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 186 METNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEM 265 (430)
Q Consensus 186 e~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~ 265 (430)
.-.+++-.|.++...+....+.|+.+--... +++-.....-.+.+-+..+...+.+++..++.++..++.++..
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~s------k~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELS------KEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555565565555555555555422221 1111111111122335555666666666666666666666654
Q ss_pred H
Q 014127 266 T 266 (430)
Q Consensus 266 L 266 (430)
+
T Consensus 100 ~ 100 (108)
T PF02403_consen 100 L 100 (108)
T ss_dssp H
T ss_pred H
Confidence 3
No 224
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=38.78 E-value=1.5e+02 Score=32.55 Aligned_cols=56 Identities=9% Similarity=0.175 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 014127 158 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNS 213 (430)
Q Consensus 158 qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~ 213 (430)
-.+..+.+=++.+.++++-|+.+++.++.=..+...++++++.++.+...|+.++.
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666777777777776666666677778888888888888888774
No 225
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=38.73 E-value=3.5e+02 Score=25.64 Aligned_cols=62 Identities=21% Similarity=0.205 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhhhhHHHH---------HHHH-----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHH
Q 014127 141 TMDAFELEKQRHNNTRMEA---------LQLL-----AKLETANADLARALAAAQKKLEMETNQVAELRQQTELKE 202 (430)
Q Consensus 141 ~~~A~elE~~aH~aTR~qA---------~aRE-----a~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE 202 (430)
+...++.|+.+|.-|+.=. ..=| -+|+-+-.+.++|+..++.+.-.++.+.+.|..++...+
T Consensus 8 ~~~~l~~Ek~eHaKTK~lLake~EKLqfAlgeieiL~kQl~rek~afe~a~~~vk~k~~~Es~k~dqL~~KC~~~~ 83 (153)
T PF15175_consen 8 VEKKLEEEKAEHAKTKALLAKESEKLQFALGEIEILSKQLEREKLAFEKALGSVKSKVLQESSKKDQLITKCNEIE 83 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455778888888877422 1122 246778888999999999999999999999998887764
No 226
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=38.64 E-value=7.2e+02 Score=29.26 Aligned_cols=18 Identities=22% Similarity=0.553 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014127 251 QLEDKAKKLEGNIEMTRK 268 (430)
Q Consensus 251 ~lq~klk~lE~EIq~Lr~ 268 (430)
++...+.++.+++..|+.
T Consensus 241 rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 241 KLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHhhhHHHHHHHHHHHHH
Confidence 344445556666666664
No 227
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.63 E-value=6.5e+02 Score=28.78 Aligned_cols=60 Identities=22% Similarity=0.209 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 014127 111 GEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLA 174 (430)
Q Consensus 111 ~ek~~l~k~l~e~~~~q~~ea~el~~~m~e~~~A~elE~~aH~aTR~qA~aREa~LE~enae~a 174 (430)
.||..|.+-++|-+- +-.-.++-|--+-+|+..=.-.|.-+-.....||..|-++-+.-+
T Consensus 43 eeK~~Lkqq~eElea----eyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE 102 (772)
T KOG0999|consen 43 EEKEDLKQQLEELEA----EYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKE 102 (772)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhH
Confidence 466666666655432 333455556666677777777788777788888888877665433
No 228
>PRK14127 cell division protein GpsB; Provisional
Probab=38.10 E-value=1.4e+02 Score=26.53 Aligned_cols=55 Identities=16% Similarity=0.397 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------ChhHHHHHHHHHHHHHHHHHH
Q 014127 240 AEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDP-------------TEVEIELKRRLGQLTDHLIQK 294 (430)
Q Consensus 240 qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~p-------------S~~e~ELE~RL~~LTe~LIqK 294 (430)
++|..+..++.+|+.++..++.+|..++.++..+ +....++=+||.-|=....-|
T Consensus 37 ~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~VFg~ 104 (109)
T PRK14127 37 KDYEAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKHVFGS 104 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHHHhcc
Confidence 3555555666666666666666666666654321 124667778887776555443
No 229
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=37.97 E-value=1e+03 Score=30.78 Aligned_cols=164 Identities=18% Similarity=0.221 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHh------
Q 014127 154 NTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAA------ 227 (430)
Q Consensus 154 aTR~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a------ 227 (430)
+-.-....-...=+..+..++--|..|..++.--..++.-|.++-.++......|.+....+++...+...+..
T Consensus 710 er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~ 789 (1822)
T KOG4674|consen 710 ERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQK 789 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556667778889999999999999999999999999999999999999999999877544432221
Q ss_pred --hhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 228 --SKGVEFE-REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED----PTEVEIELKRRLGQLTDHLIQKQAQVEA 300 (430)
Q Consensus 228 --~~~~EaE-~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~----pS~~e~ELE~RL~~LTe~LIqKQtqLEs 300 (430)
.-..+.+ +..+.+.+..|...+..++.++.....++..+...++. +..--.++.+-+..+-..|-.+++.++.
T Consensus 790 ~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~ 869 (1822)
T KOG4674|consen 790 NELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAK 869 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 24444555556666666665555545555444443322 1112445566666666666666666666
Q ss_pred HHhhHHHHHHHHHHHHH
Q 014127 301 LSSEKATLAFRIEAVSR 317 (430)
Q Consensus 301 LssEk~AL~lqLERle~ 317 (430)
|..+.+.|.-+|+-...
T Consensus 870 le~k~~eL~k~l~~~~~ 886 (1822)
T KOG4674|consen 870 LEIKLSELEKRLKSAKT 886 (1822)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 66666666666666544
No 230
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=37.77 E-value=3.4e+02 Score=26.96 Aligned_cols=65 Identities=23% Similarity=0.271 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 014127 257 KKLEGNIEMTRKEIEDPTE---VEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDE 321 (430)
Q Consensus 257 k~lE~EIq~Lr~~ls~pS~---~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~e 321 (430)
+..-.+.+.+++.+..++. ....+...+..|-+.|=.|++.+|....++.+|..|.|.++..+.+
T Consensus 130 ~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Eydr 197 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDR 197 (216)
T ss_pred HHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 3444577888888877662 3567788888999999999999999999999999999998766554
No 231
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=37.70 E-value=8.3e+02 Score=29.74 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHH-------HHhhhhhHHHHHHHHHHHH
Q 014127 97 DAIKERENMVARLEGEKQSLEKILEER--AKQQVKEASELQTSMMETMDAFELE-------KQRHNNTRMEALQLLAKLE 167 (430)
Q Consensus 97 ~~i~ere~~~arl~~ek~~l~k~l~e~--~~~q~~ea~el~~~m~e~~~A~elE-------~~aH~aTR~qA~aREa~LE 167 (430)
.+..-|+++..+|..+.-+|+..|.-- +++|. ..=++-|+.---+++++ .-...-.|.-++.-..+++
T Consensus 258 ~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~---~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~ 334 (1200)
T KOG0964|consen 258 DALDKVEDESEDLKCEIKELENKLTNLREEKEQL---KARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVK 334 (1200)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHH
Confidence 455558888888888888888766543 34444 22234444444333332 2233334444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHH
Q 014127 168 TANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHE 206 (430)
Q Consensus 168 ~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~ 206 (430)
....+-..-|+.+.-+-..-+.+-..+...+..++....
T Consensus 335 ~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~ 373 (1200)
T KOG0964|consen 335 DKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQR 373 (1200)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 555544444444444444444444444444444444333
No 232
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=37.44 E-value=3.2e+02 Score=24.92 Aligned_cols=86 Identities=12% Similarity=0.209 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Q 014127 130 EASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 209 (430)
Q Consensus 130 ea~el~~~m~e~~~A~elE~~aH~aTR~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLr 209 (430)
+...+++.+.++-.+++.- ..|..+-.+..-|...||.+...+.+.|....-++.+-..++..++-+|..++...+.+-
T Consensus 50 eld~~~~~l~~~k~~lee~-~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E 128 (143)
T PF12718_consen 50 ELDKLEEQLKEAKEKLEES-EKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWE 128 (143)
T ss_pred HHHHHHHHHHHHHHHHHhH-HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHH
Confidence 4445566666665554432 333333347777888899999999999999999999988888889999988888888777
Q ss_pred Hhhhhcc
Q 014127 210 QRNSNTH 216 (430)
Q Consensus 210 qrl~~~~ 216 (430)
.++..+.
T Consensus 129 ~k~eel~ 135 (143)
T PF12718_consen 129 EKYEELE 135 (143)
T ss_pred HHHHHHH
Confidence 7766553
No 233
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=36.92 E-value=4.2e+02 Score=26.00 Aligned_cols=91 Identities=16% Similarity=0.213 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHhHHHHHHHH-HHHHHHhhh-hcccccchhhHHHhhhhhhHHHH
Q 014127 163 LAKLETANADLARALAAAQKKLEME----TNQVAELRQQTELKEVA-HEELSQRNS-NTHQTGIYLKRLAASKGVEFERE 236 (430)
Q Consensus 163 Ea~LE~enae~akALA~~Qr~lee~----~~rvaeLeqkv~~lE~~-~~sLrqrl~-~~~q~~~~a~q~~a~~~~EaE~e 236 (430)
++.|+-+.++|..-|...++..+.. ....+....+++.|-.. ...|+ .+. .....+..++.
T Consensus 98 evrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~-~~~~~~~~~~~~l~~------------ 164 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLR-ELEEGRSKSGKNLKS------------ 164 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHH-hhhccCCCCCCCHHH------------
Confidence 4567777777777777777777762 23445555554433221 11111 111 11111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 237 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTR 267 (430)
Q Consensus 237 ~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr 267 (430)
++..+..+++++..|+.=+....++++.|+
T Consensus 165 -v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 165 -VREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 233344555666666666666677776664
No 234
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=36.15 E-value=4.4e+02 Score=26.05 Aligned_cols=77 Identities=25% Similarity=0.237 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Q 014127 130 EASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 209 (430)
Q Consensus 130 ea~el~~~m~e~~~A~elE~~aH~aTR~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLr 209 (430)
.+..++.--..++.+-...+. .+|+.+...|+.....+..++....-.++.=...+..|+.++..++.....|.
T Consensus 67 ~~~k~e~~A~~Al~~g~E~LA------r~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ 140 (225)
T COG1842 67 RAEKLEEKAELALQAGNEDLA------REALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALK 140 (225)
T ss_pred HHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555443333 24566666777777777766666666665555666666666666666666665
Q ss_pred Hhh
Q 014127 210 QRN 212 (430)
Q Consensus 210 qrl 212 (430)
.+.
T Consensus 141 ar~ 143 (225)
T COG1842 141 ARK 143 (225)
T ss_pred HHH
Confidence 553
No 235
>PRK00736 hypothetical protein; Provisional
Probab=36.08 E-value=2.1e+02 Score=23.08 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhH
Q 014127 161 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQ 197 (430)
Q Consensus 161 aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqk 197 (430)
.|...||...+-....|-.+...+-.++.+++.|..+
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~q 41 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKK 41 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554444444444444444444444444333
No 236
>PRK04406 hypothetical protein; Provisional
Probab=35.96 E-value=1.8e+02 Score=23.98 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 014127 279 ELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLD 320 (430)
Q Consensus 279 ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~ 320 (430)
.++.||..|=..|..=...+|.|..-......++.++.+.++
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~ 49 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMK 49 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666555555555666666555555555555544433
No 237
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=35.73 E-value=3.3e+02 Score=24.51 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014127 277 EIELKRRLGQLTDHLIQKQ 295 (430)
Q Consensus 277 e~ELE~RL~~LTe~LIqKQ 295 (430)
..+|+..+..|+++++.|=
T Consensus 120 ~~~l~~qv~~~~~~~~~~~ 138 (141)
T PRK08476 120 KEQLLSQMPEFKEALNAKL 138 (141)
T ss_pred HHHHHHhHHHHHHHHHHHh
Confidence 5688888888888888873
No 238
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=35.33 E-value=5.2e+02 Score=26.68 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014127 248 KIIQLEDKAKKLEGNIEMTRKE 269 (430)
Q Consensus 248 el~~lq~klk~lE~EIq~Lr~~ 269 (430)
++..+++++.....+|...++.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~ 226 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKK 226 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555544443
No 239
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=35.31 E-value=6.7e+02 Score=27.93 Aligned_cols=61 Identities=21% Similarity=0.240 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhh-cccccchhhH
Q 014127 164 AKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN-THQTGIYLKR 224 (430)
Q Consensus 164 a~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~-~~q~~~~a~q 224 (430)
-+++..+..+-.+||..|++|++....-..|.-+++.+....-.|+.+... ++++-.+.++
T Consensus 386 nd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsq 447 (527)
T PF15066_consen 386 NDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQ 447 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHH
Confidence 356777888999999999999999888888888999999998888876443 3444333333
No 240
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=35.24 E-value=19 Score=43.33 Aligned_cols=13 Identities=8% Similarity=0.026 Sum_probs=5.0
Q ss_pred HHhHHHHHHHHHH
Q 014127 194 LRQQTELKEVAHE 206 (430)
Q Consensus 194 Leqkv~~lE~~~~ 206 (430)
.-++-+.|.+..|
T Consensus 951 ymqEAKrLKHkAD 963 (1191)
T PF05110_consen 951 YMQEAKRLKHKAD 963 (1191)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 241
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=35.18 E-value=1.7e+02 Score=26.10 Aligned_cols=46 Identities=24% Similarity=0.282 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Q 014127 277 EIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDEN 322 (430)
Q Consensus 277 e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~e~ 322 (430)
-..||.+|..|...+-.=..++-.|.-|+++|++.-+.|...+.+.
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999989999999999999999988888766653
No 242
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=35.04 E-value=2.2e+02 Score=28.86 Aligned_cols=10 Identities=40% Similarity=0.744 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 014127 279 ELKRRLGQLT 288 (430)
Q Consensus 279 ELE~RL~~LT 288 (430)
.|++|+..|-
T Consensus 195 ~L~~r~~ELe 204 (290)
T COG4026 195 DLKKRWDELE 204 (290)
T ss_pred HHHHHHHHhc
Confidence 4444444443
No 243
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.88 E-value=2.7e+02 Score=23.30 Aligned_cols=50 Identities=18% Similarity=0.112 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Q 014127 156 RMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAH 205 (430)
Q Consensus 156 R~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~ 205 (430)
.+++.+|..+||.+.+-=++.|..+.--+-++..-++.+..++..+....
T Consensus 3 ~~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl 52 (72)
T COG2900 3 DMELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKL 52 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677888888888877777776665555555555555555544444333
No 244
>PRK00295 hypothetical protein; Provisional
Probab=34.58 E-value=2.4e+02 Score=22.73 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Q 014127 161 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQT 198 (430)
Q Consensus 161 aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv 198 (430)
.|...||...+=....|-.+..-+-.++.+++.|..++
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql 42 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQM 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555544444444444444444444444443333
No 245
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=34.13 E-value=5.2e+02 Score=26.32 Aligned_cols=78 Identities=17% Similarity=0.152 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 014127 239 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRL 318 (430)
Q Consensus 239 ~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~ 318 (430)
+.++..+...+...+.++...+.+.++.+.-.+.-..+..+++. .-..+...|.+++.+.+..+.+..+|+.++..
T Consensus 105 ~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 180 (370)
T PRK11578 105 EATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDT----AATELAVKQAQIGTIDAQIKRNQASLDTAKTN 180 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555544333333323444443 34556667788888888888888888887765
Q ss_pred HH
Q 014127 319 LD 320 (430)
Q Consensus 319 ~~ 320 (430)
+.
T Consensus 181 l~ 182 (370)
T PRK11578 181 LD 182 (370)
T ss_pred Hh
Confidence 44
No 246
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=34.13 E-value=5.9e+02 Score=28.51 Aligned_cols=27 Identities=7% Similarity=0.042 Sum_probs=14.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhccc
Q 014127 191 VAELRQQTELKEVAHEELSQRNSNTHQ 217 (430)
Q Consensus 191 vaeLeqkv~~lE~~~~sLrqrl~~~~q 217 (430)
......|......+|..|..+|..+.+
T Consensus 429 lQ~adSKa~~f~~Ec~aL~~rL~~aE~ 455 (518)
T PF10212_consen 429 LQHADSKAVHFYAECRALQKRLESAEK 455 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555666666666555533
No 247
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=33.87 E-value=4.1e+02 Score=25.06 Aligned_cols=36 Identities=33% Similarity=0.338 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Q 014127 163 LAKLETANADLARALAAAQKKLEMETNQVAELRQQT 198 (430)
Q Consensus 163 Ea~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv 198 (430)
...|+...++.-++++.+...++....++....+.+
T Consensus 17 ~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l 52 (158)
T PF09486_consen 17 ERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRL 52 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666555555554444
No 248
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=33.81 E-value=6.6e+02 Score=27.40 Aligned_cols=23 Identities=4% Similarity=-0.000 Sum_probs=12.9
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHH
Q 014127 104 NMVARLEGEKQSLEKILEERAKQ 126 (430)
Q Consensus 104 ~~~arl~~ek~~l~k~l~e~~~~ 126 (430)
++..||-..-.+.|.+++=|.+.
T Consensus 171 D~fsRl~~~~~s~E~l~~Yy~~~ 193 (434)
T PRK15178 171 ALFSRFHAPLGINDDPYRYYLSK 193 (434)
T ss_pred ChhhcCCCCCCCHHHHHHHHHhc
Confidence 66777743323455666666543
No 249
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=33.37 E-value=7.2e+02 Score=27.74 Aligned_cols=43 Identities=21% Similarity=0.215 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 014127 277 EIELKRRLGQLTDHLI-QKQAQVEALSSEKATLAFRIEAVSRLLD 320 (430)
Q Consensus 277 e~ELE~RL~~LTe~LI-qKQtqLEsLssEk~AL~lqLERle~~~~ 320 (430)
..++. ++..+-+.+. ..|.++..+..+...++-+|..++..+.
T Consensus 372 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 372 GSELT-QLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKIS 415 (650)
T ss_pred HHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444 5666666666 5678888888888888888888776554
No 250
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=33.12 E-value=2.3e+02 Score=27.61 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 014127 233 FEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 272 (430)
Q Consensus 233 aE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~ 272 (430)
.|..++.-++..++++++.|+..++.++.||--|...++.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~ 118 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTT 118 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 4567777888888888888888888888888877766654
No 251
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=32.72 E-value=43 Score=29.21 Aligned_cols=83 Identities=22% Similarity=0.240 Sum_probs=47.4
Q ss_pred HHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 183 KLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGN 262 (430)
Q Consensus 183 ~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~E 262 (430)
.+..+..++..+++....++.++++|-..|.. .+|.+++...- |+..+......+...+...+..+..+..+
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFe------EAN~MVa~ar~--e~~~~e~k~~~le~~l~e~~~~l~~lq~q 73 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFE------EANKMVADARR--ERAALEEKNEQLEKQLKEKEALLESLQAQ 73 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH--HHHHHHHHHHHHHHCTTHHCHCCCHCTSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777777777777766543 45777643322 23333333344445544445555556666
Q ss_pred HHHHHHHhCCC
Q 014127 263 IEMTRKEIEDP 273 (430)
Q Consensus 263 Iq~Lr~~ls~p 273 (430)
+..|+..+...
T Consensus 74 L~~LK~v~~~~ 84 (100)
T PF06428_consen 74 LKELKTVMESM 84 (100)
T ss_dssp SSHHHHCTTT-
T ss_pred HHHHHHHHHHc
Confidence 66666665553
No 252
>PF06770 Arif-1: Actin-rearrangement-inducing factor (Arif-1); InterPro: IPR010639 This family consists of several Nucleopolyhedrovirus actin-rearrangement-inducing factor (Arif-1) proteins. In response to Autographa californica nuclear polyhedrosis virus (AcMNPV) infection, a sequential rearrangement of the actin cytoskeleton occurs this is induced by Arif-1 []. Arif-1 is tyrosine phosphorylated and is located at the plasma membrane as a component of the actin rearrangement-inducing complex [].
Probab=32.54 E-value=55 Score=31.94 Aligned_cols=30 Identities=20% Similarity=0.626 Sum_probs=26.8
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHHh
Q 014127 376 VFLRRNPIAKLWSLVYLVCLHLWVIYILLS 405 (430)
Q Consensus 376 rfLrr~p~aRl~fi~Y~v~LHlwV~~vL~~ 405 (430)
-|++.|+..=+++++.++++|+|-+++++.
T Consensus 163 Tf~kqnr~~l~~~~l~~l~~~~w~l~v~~k 192 (196)
T PF06770_consen 163 TFFKQNRFTLIMFVLLILVLNCWNLYVLYK 192 (196)
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 467779999999999999999999999874
No 253
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=32.28 E-value=7.3e+02 Score=27.43 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 014127 158 EALQLLAKLETANADLARALAAAQKKLEMETN 189 (430)
Q Consensus 158 qA~aREa~LE~enae~akALA~~Qr~lee~~~ 189 (430)
+...+...++.+++++..-+...+...+++..
T Consensus 71 ~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~ 102 (475)
T PRK10361 71 SLQSINTSLEADLREVTTRMEAAQQHADDKIR 102 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555555444433
No 254
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=31.92 E-value=1e+02 Score=24.07 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 238 LEAEYTFIADKIIQLEDKAKKLEGNIEMT 266 (430)
Q Consensus 238 l~qE~~~l~~el~~lq~klk~lE~EIq~L 266 (430)
+++++..++.++..++.+...++.+|+.+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555555
No 255
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=31.82 E-value=6.8e+02 Score=26.96 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhHHHHHHHHhHH
Q 014127 177 LAAAQKKLEMETNQVAELRQQT 198 (430)
Q Consensus 177 LA~~Qr~lee~~~rvaeLeqkv 198 (430)
+.-.-..|+++.-+..-|++++
T Consensus 246 ~~~~~~~LqEEr~R~erLEeql 267 (395)
T PF10267_consen 246 YQFILEALQEERYRYERLEEQL 267 (395)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH
Confidence 3344444555555555555555
No 256
>PRK02793 phi X174 lysis protein; Provisional
Probab=31.78 E-value=2.3e+02 Score=23.09 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 014127 279 ELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRL 318 (430)
Q Consensus 279 ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~ 318 (430)
+++.||..|=..|..=...+|.|..-......++.++++.
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~ 44 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDH 44 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555555555555444433
No 257
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=31.07 E-value=2.8e+02 Score=22.24 Aligned_cols=51 Identities=22% Similarity=0.190 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 014127 166 LETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 216 (430)
Q Consensus 166 LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~ 216 (430)
+++...++.--||-.+.-+++=+.-+.....++..++..+..|..++..+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455556666666666666666556666666666666666666666655554
No 258
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=31.02 E-value=1.1e+03 Score=28.98 Aligned_cols=39 Identities=21% Similarity=0.312 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 014127 277 EIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 315 (430)
Q Consensus 277 e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERl 315 (430)
..++|.|+.+|..++-..+++...|..-.+++.--++-+
T Consensus 404 ~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~ 442 (1141)
T KOG0018|consen 404 RAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEEL 442 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888887666666666655555554444433
No 259
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=30.78 E-value=72 Score=29.20 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 014127 229 KGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRL 284 (430)
Q Consensus 229 ~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL 284 (430)
....++...++..+...+.-+..|+.++...+.||..||..+..-...+..|++||
T Consensus 76 ~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 76 ARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 260
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=30.74 E-value=7.2e+02 Score=26.89 Aligned_cols=81 Identities=15% Similarity=0.187 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CC--------ChhHHHH-------HHHHHHHHHHHHHHHHH
Q 014127 236 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE---DP--------TEVEIEL-------KRRLGQLTDHLIQKQAQ 297 (430)
Q Consensus 236 e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls---~p--------S~~e~EL-------E~RL~~LTe~LIqKQtq 297 (430)
.-++.++..+++++..+++++..++..+..+..... .+ ..+-.++ ..++..|-..+..-..+
T Consensus 74 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (525)
T TIGR02231 74 AELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERR 153 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777777766654321 11 0011223 34555555555555555
Q ss_pred HHHHHhhHHHHHHHHHHHH
Q 014127 298 VEALSSEKATLAFRIEAVS 316 (430)
Q Consensus 298 LEsLssEk~AL~lqLERle 316 (430)
++.+..+.+.|+-+|.++.
T Consensus 154 ~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 154 IRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 5566666666666655554
No 261
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=30.56 E-value=2.3e+02 Score=23.51 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 276 VEIELKRRLGQLTDHLIQKQAQVEAL 301 (430)
Q Consensus 276 ~e~ELE~RL~~LTe~LIqKQtqLEsL 301 (430)
.-.+|+..|..|.+.|=.|=.||-.|
T Consensus 51 ~R~~L~~~l~~lv~~mE~K~dQI~~L 76 (79)
T PF06657_consen 51 KRRDLEQELEELVKRMEAKADQIYKL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47799999999999999999988776
No 262
>PRK04406 hypothetical protein; Provisional
Probab=30.06 E-value=3.2e+02 Score=22.59 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Q 014127 158 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQT 198 (430)
Q Consensus 158 qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv 198 (430)
....|...||...+=....|-.+..-+-.++.+++.|..++
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql 48 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQM 48 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666655555555555444444444444443333
No 263
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=30.05 E-value=2.1e+02 Score=21.58 Aligned_cols=33 Identities=12% Similarity=0.231 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 236 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRK 268 (430)
Q Consensus 236 e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~ 268 (430)
...++.+..++.++..|+.....|..+|..|+.
T Consensus 21 ~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 21 QRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334555556666666666666667777766654
No 264
>PRK01156 chromosome segregation protein; Provisional
Probab=30.02 E-value=9e+02 Score=27.83 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014127 244 FIADKIIQLEDKAKKLEGNIE 264 (430)
Q Consensus 244 ~l~~el~~lq~klk~lE~EIq 264 (430)
.+..++..+..+++.++.++.
T Consensus 480 ~l~~~i~~l~~~~~~l~~~~~ 500 (895)
T PRK01156 480 RLEEKIREIEIEVKDIDEKIV 500 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444433333333
No 265
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=29.98 E-value=5.8e+02 Score=25.56 Aligned_cols=35 Identities=11% Similarity=0.262 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 235 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE 269 (430)
Q Consensus 235 ~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ 269 (430)
+.+.++....|+++++.++..+..+..||+.|+.+
T Consensus 88 RDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777777777777777777777764
No 266
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.74 E-value=9.2e+02 Score=27.84 Aligned_cols=28 Identities=36% Similarity=0.564 Sum_probs=17.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 274 TEVEIELKRRLGQLTDHLIQKQAQVEAL 301 (430)
Q Consensus 274 S~~e~ELE~RL~~LTe~LIqKQtqLEsL 301 (430)
|.++.++-+-|..+.+.|=.=+..|+.+
T Consensus 631 S~AEr~~~~EL~~~~~~l~~l~~si~~l 658 (717)
T PF10168_consen 631 SEAEREFKKELERMKDQLQDLKASIEQL 658 (717)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5568888888888877764434444443
No 267
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=29.61 E-value=3.3e+02 Score=27.75 Aligned_cols=67 Identities=19% Similarity=0.304 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CC--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 236 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED-----PT--EVEIELKRRLGQLTDHLIQKQAQVEALS 302 (430)
Q Consensus 236 e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~-----pS--~~e~ELE~RL~~LTe~LIqKQtqLEsLs 302 (430)
+..++.+..+..+-..|..||++...|+++.++.+.. |. ..-..||..|+.|=+.=+.|=--++-|.
T Consensus 179 ~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe 252 (267)
T PF10234_consen 179 QQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLE 252 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3344445555555567777888888888888776643 32 2356678888888888888866665443
No 268
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=29.52 E-value=1.3e+02 Score=29.93 Aligned_cols=41 Identities=24% Similarity=0.185 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 014127 280 LKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLD 320 (430)
Q Consensus 280 LE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~ 320 (430)
||+.+..-...+++=|.||+.|..|...|+=++|.+++.++
T Consensus 45 le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~ 85 (263)
T PRK10803 45 LERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLN 85 (263)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444444444555566666666666666666666544333
No 269
>PF08409 DUF1736: Domain of unknown function (DUF1736); InterPro: IPR013618 This domain of unknown function is found in various hypothetical metazoan proteins.
Probab=29.25 E-value=60 Score=27.26 Aligned_cols=26 Identities=15% Similarity=0.392 Sum_probs=21.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhc
Q 014127 381 NPIAKLWSLVYLVCLHLWVIYILLSH 406 (430)
Q Consensus 381 ~p~aRl~fi~Y~v~LHlwV~~vL~~~ 406 (430)
+...|.+.+.|+..+|+|.++.-.+.
T Consensus 21 ~~~tR~LT~~yl~~~n~~LLl~P~~L 46 (80)
T PF08409_consen 21 SLLTRWLTYNYLPAFNLWLLLFPSWL 46 (80)
T ss_pred cHHHHHHHHHHHHHHHHHHHHCcccc
Confidence 45678999999999999998776543
No 270
>PRK10698 phage shock protein PspA; Provisional
Probab=28.75 E-value=5.6e+02 Score=24.99 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=7.5
Q ss_pred HHhHHHHHHHHHHHHHHh
Q 014127 194 LRQQTELKEVAHEELSQR 211 (430)
Q Consensus 194 Leqkv~~lE~~~~sLrqr 211 (430)
++.++...+.....|..+
T Consensus 57 ~er~~~~~~~~~~~~e~k 74 (222)
T PRK10698 57 LTRRIEQAEAQQVEWQEK 74 (222)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 271
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=28.71 E-value=9.4e+02 Score=27.59 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014127 238 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 270 (430)
Q Consensus 238 l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~l 270 (430)
...|+..+-.++.+.+..+-.+|.+++.|+.++
T Consensus 233 k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql 265 (629)
T KOG0963|consen 233 KAAEVSLIMTELEDAQQRIVFLEREVEQLREQL 265 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666666666665
No 272
>PRK00736 hypothetical protein; Provisional
Probab=28.37 E-value=3.1e+02 Score=22.09 Aligned_cols=44 Identities=20% Similarity=0.144 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Q 014127 158 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELK 201 (430)
Q Consensus 158 qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~l 201 (430)
+...|.+-++....++..++++-|+.|+.-+.++..|.+++...
T Consensus 9 ~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 9 ELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456677777888888888888888888778888887777543
No 273
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=28.25 E-value=3.2e+02 Score=31.26 Aligned_cols=56 Identities=25% Similarity=0.334 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 014127 247 DKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 316 (430)
Q Consensus 247 ~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle 316 (430)
.+|..++.+-+++..+|+.+ -..+..|-..+.+||+.|++|..+...-+.+++.+-
T Consensus 93 ~EL~ele~krqel~seI~~~--------------n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEI--------------NTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHH--------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 45555655555555555533 344556777788999999999999999998888864
No 274
>PF15456 Uds1: Up-regulated During Septation
Probab=28.16 E-value=4.5e+02 Score=23.73 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 014127 175 RALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 214 (430)
Q Consensus 175 kALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~ 214 (430)
.||.+++.-=--...+|++|..++..++..++.++.++..
T Consensus 8 tAl~ds~~feiLs~eEVe~LKkEl~~L~~R~~~lr~kl~l 47 (124)
T PF15456_consen 8 TALGDSKEFEILSFEEVEELKKELRSLDSRLEYLRRKLAL 47 (124)
T ss_pred HHHHHHHcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555444445578889999999999999988887763
No 275
>KOG2257 consensus N-acetylglucosaminyltransferase complex, subunit PIG-P, required for phosphatidylinositol biosynthesis [Function unknown]
Probab=27.74 E-value=51 Score=30.47 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcc
Q 014127 387 WSLVYLVCLHLWVIYILLSHSQSSAE 412 (430)
Q Consensus 387 ~fi~Y~v~LHlwV~~vL~~~s~~s~~ 412 (430)
+|+.|++..-++|+|++|.++|.+--
T Consensus 11 gF~~yiv~~~~~ViylIWai~P~~~l 36 (135)
T KOG2257|consen 11 GFVLYIVSWTLFVIYLIWAITPVPIL 36 (135)
T ss_pred hhHHHHHHHHHHHHHHHhhcccHHHH
Confidence 69999999999999999999998643
No 276
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=27.67 E-value=3e+02 Score=24.36 Aligned_cols=37 Identities=22% Similarity=0.467 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 014127 281 KRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 317 (430)
Q Consensus 281 E~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~ 317 (430)
...-..|++.|-.|-+.|-.+..|.-+|.|+-.+|..
T Consensus 25 Q~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~k 61 (102)
T PF10205_consen 25 QAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTK 61 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444577777777888888888888888887777654
No 277
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=27.64 E-value=3.8e+02 Score=22.72 Aligned_cols=78 Identities=24% Similarity=0.383 Sum_probs=56.4
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 103 ENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQK 182 (430)
Q Consensus 103 e~~~arl~~ek~~l~k~l~e~~~~q~~ea~el~~~m~e~~~A~elE~~aH~aTR~qA~aREa~LE~enae~akALA~~Qr 182 (430)
+.+..||++.-..||+-+..+-.... ...++...+ ..+...+.+=..--.++.+|...|+..|.+...-|-...-
T Consensus 7 e~al~rL~~aid~LE~~v~~r~~~~~-~~~~~e~ei----~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e 81 (89)
T PF13747_consen 7 EAALTRLEAAIDRLEKAVDRRLERDR-KRDELEEEI----QRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIE 81 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHHH----HHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999988876444 334554443 4445555555666678899999999999999888876655
Q ss_pred HHH
Q 014127 183 KLE 185 (430)
Q Consensus 183 ~le 185 (430)
.+.
T Consensus 82 ~Ir 84 (89)
T PF13747_consen 82 TIR 84 (89)
T ss_pred HHH
Confidence 443
No 278
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=27.57 E-value=3.7e+02 Score=23.54 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 014127 177 LAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 216 (430)
Q Consensus 177 LA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~ 216 (430)
.+..+++|++--.+++.++.++..++..-+.|..+|.+..
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999998888774
No 279
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=27.53 E-value=2.4e+02 Score=24.45 Aligned_cols=21 Identities=14% Similarity=0.431 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHhCC-CC
Q 014127 254 DKAKKLEGNIEMTRKEIED-PT 274 (430)
Q Consensus 254 ~klk~lE~EIq~Lr~~ls~-pS 274 (430)
+++...+..++.+...+.+ ||
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~LPt 63 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHLPT 63 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC
Confidence 3333333333444333333 55
No 280
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=27.36 E-value=3.7e+02 Score=27.82 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=9.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH
Q 014127 295 QAQVEALSSEKATLAFRIEAVS 316 (430)
Q Consensus 295 QtqLEsLssEk~AL~lqLERle 316 (430)
+..+|.+-.....|.+++.-+.
T Consensus 139 ~~elEr~K~~~d~L~~e~~~Lr 160 (302)
T PF09738_consen 139 IRELERQKRAHDSLREELDELR 160 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 281
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=27.24 E-value=3.8e+02 Score=22.55 Aligned_cols=65 Identities=22% Similarity=0.268 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 014127 240 AEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATL 308 (430)
Q Consensus 240 qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL 308 (430)
+++..+..++..++.+-+.+.++|..+.+.= .+-.+|-.+...+.+.+-....++..+..+.+.+
T Consensus 36 ~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~----~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 36 QERRELQQELEELRAERNELSKEIGKLKKAG----EDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666554433 2234555556666665555555555555554443
No 282
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=27.22 E-value=8.1e+02 Score=26.39 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHH
Q 014127 369 SIFLAGVVFLRRNPIAKLWSLVYLVC 394 (430)
Q Consensus 369 ~~~lrl~rfLrr~p~aRl~fi~Y~v~ 394 (430)
++...+..-|.++| .|+++.+.+++
T Consensus 359 St~~~~~~Pl~~tR-~r~~~t~~~v~ 383 (395)
T PF10267_consen 359 STVANCPLPLTRTR-LRTLTTLLLVG 383 (395)
T ss_pred HHHhcCCcHHhhcc-HHHHHHHHHHH
Confidence 44444445455555 56666665555
No 283
>PF14992 TMCO5: TMCO5 family
Probab=27.12 E-value=6.9e+02 Score=25.81 Aligned_cols=100 Identities=19% Similarity=0.297 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 014127 97 DAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARA 176 (430)
Q Consensus 97 ~~i~ere~~~arl~~ek~~l~k~l~e~~~~q~~ea~el~~~m~e~~~A~elE~~aH~aTR~qA~aREa~LE~enae~akA 176 (430)
.-|.+.|..+-+|+.|-...-.++++.++.-. =+.+-+++. ..+++ --+.||-+|.-+.+.
T Consensus 25 ~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~-~~~~~e~~l----~~le~--------------e~~~LE~~ne~l~~~ 85 (280)
T PF14992_consen 25 QKIQEKEGAIQSLEREITKMDHIADRSEEEDI-ISEERETDL----QELEL--------------ETAKLEKENEHLSKS 85 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCchhHHhh-hhhchHHHH----HHHHh--------------hhHHHhhhhHhhhhh
Confidence 66889999999999998888888887755432 334444432 12222 236789999999999
Q ss_pred HHHHHHHHHHhHHH-----------HHHHHhHHHHHHHHHHHHHHhhhhc
Q 014127 177 LAAAQKKLEMETNQ-----------VAELRQQTELKEVAHEELSQRNSNT 215 (430)
Q Consensus 177 LA~~Qr~lee~~~r-----------vaeLeqkv~~lE~~~~sLrqrl~~~ 215 (430)
+...|++++++... ..+.+-++..+...|..+..++.+.
T Consensus 86 ~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kv 135 (280)
T PF14992_consen 86 VQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKV 135 (280)
T ss_pred hhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999998875322 2233344444444555444444444
No 284
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=27.10 E-value=1.4e+02 Score=30.86 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014127 241 EYTFIADKIIQLEDKAKKLEGNIEMTRKEI 270 (430)
Q Consensus 241 E~~~l~~el~~lq~klk~lE~EIq~Lr~~l 270 (430)
|+.-|+.+=.+|++++..+|.||+.||+-+
T Consensus 256 e~~~Le~rN~~LK~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 256 ELEGLEKRNEELKDQASELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555567777777777777776644
No 285
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=26.78 E-value=1.4e+02 Score=31.29 Aligned_cols=19 Identities=11% Similarity=0.310 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014127 251 QLEDKAKKLEGNIEMTRKE 269 (430)
Q Consensus 251 ~lq~klk~lE~EIq~Lr~~ 269 (430)
.++..+..+.-+|--|+..
T Consensus 116 ~Lqs~v~~lsTdvsNLksd 134 (326)
T PF04582_consen 116 DLQSSVSALSTDVSNLKSD 134 (326)
T ss_dssp --HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhhhhhh
Confidence 3333333333333333333
No 286
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=26.74 E-value=8e+02 Score=27.15 Aligned_cols=133 Identities=20% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHH--HHHHHHHHHHHH------
Q 014127 184 LEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYT--FIADKIIQLEDK------ 255 (430)
Q Consensus 184 lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~--~l~~el~~lq~k------ 255 (430)
.+.=+.++..|.++.+.+..+.+.|+-.-.-++...-+..+..-.-+..+| +..||. +|-.+|..|+..
T Consensus 45 ~e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQarae---qeeEfisntLlkkiqal~keketla~ 121 (552)
T KOG2129|consen 45 GESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAE---QEEEFISNTLLKKIQALFKEKETLAT 121 (552)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccc---hHHHHHHHHHHHHHHHhhccccccch
Q ss_pred ----------------HHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 014127 256 ----------------AKKLEGNIEMTRKEIEDPT-EVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRL 318 (430)
Q Consensus 256 ----------------lk~lE~EIq~Lr~~ls~pS-~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~ 318 (430)
++++..+--.+..-+.+.- .--.-|=+.|+-|-..=+.||+.||.|..|+-.|.--||.-+-.
T Consensus 122 ~Ye~eee~lTn~Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEa 201 (552)
T KOG2129|consen 122 VYEVEEEFLTNPLSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEA 201 (552)
T ss_pred hhhhhhhhccCchhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHH
Q ss_pred H
Q 014127 319 L 319 (430)
Q Consensus 319 ~ 319 (430)
+
T Consensus 202 l 202 (552)
T KOG2129|consen 202 L 202 (552)
T ss_pred H
No 287
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=26.28 E-value=4.7e+02 Score=23.37 Aligned_cols=10 Identities=20% Similarity=0.185 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 014127 238 LEAEYTFIAD 247 (430)
Q Consensus 238 l~qE~~~l~~ 247 (430)
...||..|++
T Consensus 138 ke~E~~kLk~ 147 (151)
T PF11559_consen 138 KEREIEKLKE 147 (151)
T ss_pred HHHHHHHHHH
Confidence 3333433333
No 288
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=26.27 E-value=8.1e+02 Score=26.06 Aligned_cols=177 Identities=21% Similarity=0.221 Sum_probs=0.0
Q ss_pred hhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ChhHHHHHHH-------HHHHHHHH
Q 014127 221 YLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDP--TEVEIELKRR-------LGQLTDHL 291 (430)
Q Consensus 221 ~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~p--S~~e~ELE~R-------L~~LTe~L 291 (430)
++.+....---+.|.=+-+.-...-.+.++-.++.+++.++.+...+..+..+ ....-+++.+ +..|-+-|
T Consensus 153 eaq~Iaqailkqse~lIN~Ls~rAr~dt~r~Ae~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL 232 (372)
T COG3524 153 EAQKIAQAILKQSEKLINQLSERARRDTVRFAEEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDEL 232 (372)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHhcCCCCCCCCCCcccCcccCCCCCcCcc---hhhhhhcc---cc
Q 014127 292 IQKQAQVEALSSEK-------ATLAFRIEAVSRLLDENKPVTGSSSRDLEFGAWDLSQSNLRPL---FEEKIRSG---KK 358 (430)
Q Consensus 292 IqKQtqLEsLssEk-------~AL~lqLERle~~~~e~~~~s~~s~~d~e~~~~~~~~s~lrP~---f~~~~a~~---~r 358 (430)
|.+|++|..+.+-- -.|.-|.|-++.++.+... .+.+| +++..+-.. |.+..... .+
T Consensus 233 ~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q-------~isag---~~~~sl~~qaAefq~l~lE~~fAek 302 (372)
T COG3524 233 IVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQ-------AISAG---GSSQSLSNQAAEFQRLYLENTFAEK 302 (372)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHH-------HhcCC---CCccchhHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhHHHHHHHHHHHHh--------------hch-hhHHHHHHHHHHHHHHHHHHHHhcc
Q 014127 359 HIGSLLKQLDSIFLAGVVFLR--------------RNP-IAKLWSLVYLVCLHLWVIYILLSHS 407 (430)
Q Consensus 359 ~~k~al~~lD~~~lrl~rfLr--------------r~p-~aRl~fi~Y~v~LHlwV~~vL~~~s 407 (430)
.|..++..|++.-+-.-|-.+ .|| ..=.+|..++++|-+|=+.++.+++
T Consensus 303 ay~AAl~SlEsArieAdrqq~yL~iis~P~~pdlA~yP~RLyni~at~iill~~yGI~~ll~~s 366 (372)
T COG3524 303 AYAAALTSLESARIEADRQQLYLEIISQPNLPDLAKYPERLYNILATFIILLIVYGIVVLLKAS 366 (372)
T ss_pred HHHHHHHHHHHHhhhhhhhhheeeeecCCCchhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHH
No 289
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=25.47 E-value=1.8e+02 Score=29.27 Aligned_cols=70 Identities=21% Similarity=0.289 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChh--HHHHHHHHHHHHHHHHHHHH-HHHHHHhhH
Q 014127 236 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEV--EIELKRRLGQLTDHLIQKQA-QVEALSSEK 305 (430)
Q Consensus 236 e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~--e~ELE~RL~~LTe~LIqKQt-qLEsLssEk 305 (430)
..+++.|..+.++|..++.++...+.+++.+......++.. +.+-...-...|+-+|+|-. .|..|..++
T Consensus 183 ~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~ 255 (259)
T PF08657_consen 183 AALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKK 255 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 44677788888888888888877777777665544433321 01111122246777776642 334443333
No 290
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=25.26 E-value=7.8e+02 Score=25.54 Aligned_cols=174 Identities=16% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhHHHHHHHHhH
Q 014127 129 KEASELQTSMMETMDA--FELEKQRHNNTRMEALQLLAKLETANADLARALAAAQK---------KLEMETNQVAELRQQ 197 (430)
Q Consensus 129 ~ea~el~~~m~e~~~A--~elE~~aH~aTR~qA~aREa~LE~enae~akALA~~Qr---------~lee~~~rvaeLeqk 197 (430)
+.|..+-.+++++.-. .+.-...=..|..-...|..+++.+..+...+|...++ ..+....++..|..+
T Consensus 144 ~~A~~i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~ 223 (444)
T TIGR03017 144 RFAATVANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQ 223 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhH
Q 014127 198 TELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVE 277 (430)
Q Consensus 198 v~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e 277 (430)
+............++.........+.-... .-+..+..++..++.++..++.......|.-
T Consensus 224 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v 284 (444)
T TIGR03017 224 LVAAQAQVMDASSKEGGSSGKDALPEVIAN-------------------PIIQNLKTDIARAESKLAELSQRLGPNHPQY 284 (444)
T ss_pred HHHHHHHHHHHHHHHhccCCcccchhhhcC-------------------hHHHHHHHHHHHHHHHHHHHHHHhCCCCcHH
Q ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 014127 278 IELKRRLGQLTDHLIQ--------KQAQVEALSSEKATLAFRIEAVSRLLDE 321 (430)
Q Consensus 278 ~ELE~RL~~LTe~LIq--------KQtqLEsLssEk~AL~lqLERle~~~~e 321 (430)
..++.+|..|-..|-. -+...+.+....+.+.-+++..+.....
T Consensus 285 ~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 336 (444)
T TIGR03017 285 KRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVLE 336 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 291
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.15 E-value=1.5e+02 Score=25.82 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 239 EAEYTFIADKIIQLEDKAKKLEGNIEMTR 267 (430)
Q Consensus 239 ~qE~~~l~~el~~lq~klk~lE~EIq~Lr 267 (430)
++++..++.++..++.+...+..+|..|+
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444455454443
No 292
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=25.10 E-value=5.5e+02 Score=23.67 Aligned_cols=117 Identities=15% Similarity=0.198 Sum_probs=69.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 190 QVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE 269 (430)
Q Consensus 190 rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ 269 (430)
.+..++-+...+.+....+..++.....-+. ...-.++|. ++-+-..+..+|.....++..|+..
T Consensus 7 ~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge------~L~~iDFeq---------Lkien~~l~~kIeERn~eL~~Lk~~ 71 (177)
T PF13870_consen 7 EISKLRLKNITLKHQLAKLEEQLRQKEELGE------GLHLIDFEQ---------LKIENQQLNEKIEERNKELLKLKKK 71 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------cccHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666555543322 123233332 3334445666666666777777664
Q ss_pred hCCC-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 014127 270 IEDP-------TEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDE 321 (430)
Q Consensus 270 ls~p-------S~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~e 321 (430)
.... -.--..+...+..+-..|..++..+..+..+......+..++......
T Consensus 72 ~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~ 130 (177)
T PF13870_consen 72 IGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKK 130 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4321 122445666777777788888888888888888888777777654443
No 293
>smart00338 BRLZ basic region leucin zipper.
Probab=25.09 E-value=2.2e+02 Score=22.04 Aligned_cols=31 Identities=13% Similarity=0.257 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014127 240 AEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 270 (430)
Q Consensus 240 qE~~~l~~el~~lq~klk~lE~EIq~Lr~~l 270 (430)
.++..|+.+...|..++..++.++..|+..+
T Consensus 33 ~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 33 RKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555556666666666666665543
No 294
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=25.02 E-value=1.7e+02 Score=27.94 Aligned_cols=48 Identities=25% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH-----HHHHHHHHHH
Q 014127 246 ADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRR-----LGQLTDHLIQ 293 (430)
Q Consensus 246 ~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~R-----L~~LTe~LIq 293 (430)
+++-..|+.+|.+.|.||+.||+-|..+-.-..+|.++ +..|.+.|.+
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlsk 80 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSK 80 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHH
No 295
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=24.93 E-value=3.7e+02 Score=21.63 Aligned_cols=58 Identities=26% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHh
Q 014127 143 DAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 211 (430)
Q Consensus 143 ~A~elE~~aH~aTR~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqr 211 (430)
.|++.|..+|.+ +..+....-.+--.++.+|++--.+..+|.++|..|+...+.++.+
T Consensus 4 saL~~EirakQ~-----------~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 4 SALEAEIRAKQA-----------IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 296
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=24.93 E-value=7.5e+02 Score=25.21 Aligned_cols=135 Identities=18% Similarity=0.170 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhH
Q 014127 154 NTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEF 233 (430)
Q Consensus 154 aTR~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~Ea 233 (430)
.|-.+.-.++..|...|.++.++|-.+...-.. +|..|-++-.......+.|...-.+ ....+..-...|....
T Consensus 6 ~sl~el~~h~~~L~~~N~~L~~~IqdtE~st~~---~Vr~lLqqy~~~~~~i~~le~~~~~---~l~~ak~eLqe~eek~ 79 (258)
T PF15397_consen 6 TSLQELKKHEDFLTKLNKELIKEIQDTEDSTAL---KVRKLLQQYDIYRTAIDILEYSNHK---QLQQAKAELQEWEEKE 79 (258)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhHHhhHHH---HHHHHHHHHHHHHHHHHHHHccChH---HHHHHHHHHHHHHHHH
Confidence 344566678889999999999999887665444 4555555554444444444332111 0112222234555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CC--hhHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 234 EREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED--PT--EVEIELKRRLGQLTDHLIQKQAQVE 299 (430)
Q Consensus 234 E~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~--pS--~~e~ELE~RL~~LTe~LIqKQtqLE 299 (430)
|. .+..|+.++..+..++.+...++.-|+-=+.+ |- .-..+|..+|.+|.+.--.-...+.
T Consensus 80 e~-----~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~ 144 (258)
T PF15397_consen 80 ES-----KLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELN 144 (258)
T ss_pred Hh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 44566677777777777777777777654433 32 2377899999999887644444433
No 297
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=24.74 E-value=4.5e+02 Score=22.55 Aligned_cols=59 Identities=19% Similarity=0.330 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--Ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 014127 247 DKIIQLEDKAKKLEGNIEMTRKEIEDP--TE-VEIELKRRLGQLTDHLIQKQAQVEALSSEK 305 (430)
Q Consensus 247 ~el~~lq~klk~lE~EIq~Lr~~ls~p--S~-~e~ELE~RL~~LTe~LIqKQtqLEsLssEk 305 (430)
.+|..+++++......++.....+..+ |+ .-..||+-+..|...|-....+|-.|..|+
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhh
Confidence 355566677777777777777777554 33 467788777777777776666666665543
No 298
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=24.72 E-value=3.9e+02 Score=21.86 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014127 238 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 270 (430)
Q Consensus 238 l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~l 270 (430)
++..+..+..++..++.++..++.++..++..+
T Consensus 67 L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 67 LEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555666666666666666666655544
No 299
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=24.48 E-value=2.1e+02 Score=22.91 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 014127 245 IADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDH 290 (430)
Q Consensus 245 l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~ 290 (430)
+.+++.+.+.+++..+..+..+..........-..+..+|..+++.
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666655555555443322222234555555555543
No 300
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=24.09 E-value=6.6e+02 Score=24.29 Aligned_cols=94 Identities=18% Similarity=0.107 Sum_probs=64.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccc-hhhHHHhhhh
Q 014127 152 HNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGI-YLKRLAASKG 230 (430)
Q Consensus 152 H~aTR~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~-~a~q~~a~~~ 230 (430)
.+.+-.+-..|..+......+....|+..+..+..-..+-..+...+...-.....+..+|......+. +..+. .-|.
T Consensus 76 ~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a-~~~~ 154 (240)
T PF12795_consen 76 ANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEA-QRWL 154 (240)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHH-HHHH
Confidence 345667778888888888888888899998888888888888888888888888888888877644432 22222 2344
Q ss_pred hhHHHHHHHHHHHHHH
Q 014127 231 VEFEREILEAEYTFIA 246 (430)
Q Consensus 231 ~EaE~e~l~qE~~~l~ 246 (430)
..+|...+..++.+++
T Consensus 155 l~ae~~~l~~~~~~le 170 (240)
T PF12795_consen 155 LQAELAALEAQIEMLE 170 (240)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455444444433333
No 301
>PRK00295 hypothetical protein; Provisional
Probab=24.05 E-value=3.9e+02 Score=21.57 Aligned_cols=43 Identities=21% Similarity=0.084 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Q 014127 159 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELK 201 (430)
Q Consensus 159 A~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~l 201 (430)
-..|.+=++..+.++..++++-|+.|+.-..++..|.+++..+
T Consensus 10 LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 10 LESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666677777777777777766666666666666543
No 302
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=23.91 E-value=9.9e+02 Score=26.24 Aligned_cols=30 Identities=10% Similarity=0.149 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 014127 244 FIADKIIQLEDKAKKLEGNIEMTRKEIEDP 273 (430)
Q Consensus 244 ~l~~el~~lq~klk~lE~EIq~Lr~~ls~p 273 (430)
..+.+|.+.+..+....++|+..-.++++.
T Consensus 214 ~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~ 243 (499)
T COG4372 214 ARTEELARRAAAAQQTAQAIQQRDAQISQK 243 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555443
No 303
>PRK04325 hypothetical protein; Provisional
Probab=23.90 E-value=4e+02 Score=21.86 Aligned_cols=37 Identities=14% Similarity=0.122 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhH
Q 014127 161 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQ 197 (430)
Q Consensus 161 aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqk 197 (430)
.|..+||...+=....|-.+...+-.++.+++.|..+
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~q 45 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQ 45 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544444444444444444444444333
No 304
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.88 E-value=80 Score=28.63 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 014127 276 VEIELKRRLGQLTDHLIQKQAQVEALSSEK 305 (430)
Q Consensus 276 ~e~ELE~RL~~LTe~LIqKQtqLEsLssEk 305 (430)
.+..+|..=.+.++.|-+|=+.|-+|+-+.
T Consensus 26 ~~~~le~ENee~~e~L~~kV~aLKsLs~dI 55 (118)
T KOG3385|consen 26 HLASLERENEEAAESLQQKVKALKSLSLDI 55 (118)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 456666777778888888877777776543
No 305
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=23.87 E-value=1.6e+02 Score=25.20 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHhhc
Q 014127 365 KQLDSIFLAGVVFLRRN 381 (430)
Q Consensus 365 ~~lD~~~lrl~rfLrr~ 381 (430)
++||.+.-+-..||+-+
T Consensus 20 DQL~qlVsrN~sfirdF 36 (84)
T PF06143_consen 20 DQLEQLVSRNRSFIRDF 36 (84)
T ss_pred HHHHHHHHhChHHHHHH
Confidence 45666665555555543
No 306
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=23.79 E-value=3.9e+02 Score=21.55 Aligned_cols=79 Identities=19% Similarity=0.332 Sum_probs=38.0
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 182 KKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEG 261 (430)
Q Consensus 182 r~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~ 261 (430)
+.+.....+.....+++..+.....++...+.... .+.++.++.. ...-+..+...+..++..+..++.
T Consensus 5 ~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~-~~~s~~~~~~----------~~~~~~~l~~~i~~~~~~~~~~~~ 73 (123)
T PF02050_consen 5 QELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ-QGVSVAQLRN----------YQRYISALEQAIQQQQQELERLEQ 73 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SGGGHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555556666666666666666655554 3444433321 112223444555555566666666
Q ss_pred HHHHHHHHhC
Q 014127 262 NIEMTRKEIE 271 (430)
Q Consensus 262 EIq~Lr~~ls 271 (430)
+++..+..+.
T Consensus 74 ~~~~~r~~l~ 83 (123)
T PF02050_consen 74 EVEQAREELQ 83 (123)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666555543
No 307
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=23.66 E-value=1e+03 Score=26.39 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014127 277 EIELKRRLGQLTDHLIQKQA 296 (430)
Q Consensus 277 e~ELE~RL~~LTe~LIqKQt 296 (430)
..+|+.+|+.|+=.|=.+|.
T Consensus 437 I~dLqEQlrDlmf~le~qqk 456 (493)
T KOG0804|consen 437 ITDLQEQLRDLMFFLEAQQK 456 (493)
T ss_pred HHHHHHHHHhHheehhhhhh
Confidence 44677777777766655543
No 308
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=23.62 E-value=5.4e+02 Score=23.08 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 154 NTRMEALQLLAKLETANADLARALAAA 180 (430)
Q Consensus 154 aTR~qA~aREa~LE~enae~akALA~~ 180 (430)
+.+++-+.+.+.|+.....+-.+....
T Consensus 9 as~~el~n~La~Le~slE~~K~S~~eL 35 (107)
T PF09304_consen 9 ASQNELQNRLASLERSLEDEKTSQGEL 35 (107)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344444444444444444444443333
No 309
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.62 E-value=7.1e+02 Score=27.57 Aligned_cols=12 Identities=17% Similarity=0.152 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 014127 245 IADKIIQLEDKA 256 (430)
Q Consensus 245 l~~el~~lq~kl 256 (430)
+++++.+++..+
T Consensus 121 l~~~~~~~~~~l 132 (472)
T TIGR03752 121 LKSERQQLQGLI 132 (472)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 310
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=23.56 E-value=2.8e+02 Score=25.74 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHH
Q 014127 277 EIELKRRLGQLTDHL 291 (430)
Q Consensus 277 e~ELE~RL~~LTe~L 291 (430)
...+|.||+.|...|
T Consensus 56 q~~~e~RI~~L~~~L 70 (158)
T PRK05892 56 LARLDDRINELDRRL 70 (158)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556677777776554
No 311
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.45 E-value=6.1e+02 Score=23.63 Aligned_cols=64 Identities=23% Similarity=0.339 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 014127 247 DKIIQLEDKAKKLEGNIEMTRKEIEDPTE--------VEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 317 (430)
Q Consensus 247 ~el~~lq~klk~lE~EIq~Lr~~ls~pS~--------~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~ 317 (430)
..+..+-.++..+++.++.++++.+..+. ....++..+..|.+.|-.|+ .|..+|.-|.|.++.
T Consensus 118 ~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~-------~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 118 RRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKE-------KEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 34445556666677777777776654332 12334444444544444444 444455556555544
No 312
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=23.10 E-value=7.2e+02 Score=24.38 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=19.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 229 KGVEFEREILEAEYTFIADKIIQLEDKAK 257 (430)
Q Consensus 229 ~~~EaE~e~l~qE~~~l~~el~~lq~klk 257 (430)
.+.+-|.-+|+-|++.|.++|...+.+..
T Consensus 92 ~~~dwEevrLkrELa~Le~~l~~~~~~~~ 120 (195)
T PF12761_consen 92 EGTDWEEVRLKRELAELEEKLSKVEQAAE 120 (195)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555767777777777777765555543
No 313
>PLN02320 seryl-tRNA synthetase
Probab=22.36 E-value=3e+02 Score=30.42 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 278 IELKRRLGQLTDHLIQKQAQVEALS 302 (430)
Q Consensus 278 ~ELE~RL~~LTe~LIqKQtqLEsLs 302 (430)
.+|..+|..|-+.|..-+.++..+.
T Consensus 140 k~lk~~i~~le~~~~~~~~~l~~~~ 164 (502)
T PLN02320 140 KNLKEGLVTLEEDLVKLTDELQLEA 164 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555444
No 314
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=22.29 E-value=7.5e+02 Score=24.28 Aligned_cols=86 Identities=17% Similarity=0.234 Sum_probs=49.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhCCCC-------hhHHHHHHHHHHHHHHHH
Q 014127 227 ASKGVEFEREILEAEYTFIADKII-------QLEDKAKKLEGNIEMTRKEIEDPT-------EVEIELKRRLGQLTDHLI 292 (430)
Q Consensus 227 a~~~~EaE~e~l~qE~~~l~~el~-------~lq~klk~lE~EIq~Lr~~ls~pS-------~~e~ELE~RL~~LTe~LI 292 (430)
++++.|.|..-+-.++..|+++-. -++.+.+.+-.+...|..++.... ..-.+=-.++..|+..+-
T Consensus 89 q~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ie 168 (193)
T PF14662_consen 89 QARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIE 168 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 456677776666666666665553 444445555555556666663321 113344556666666665
Q ss_pred HHHHHHHHHHhhHHHHHHHH
Q 014127 293 QKQAQVEALSSEKATLAFRI 312 (430)
Q Consensus 293 qKQtqLEsLssEk~AL~lqL 312 (430)
.==+..+.|..||+-|+-||
T Consensus 169 Ey~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 169 EYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55556666677776666555
No 315
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=22.26 E-value=1.3e+03 Score=27.13 Aligned_cols=35 Identities=29% Similarity=0.260 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 014127 276 VEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAF 310 (430)
Q Consensus 276 ~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~l 310 (430)
.+.+|=.||..--.+|..=|-.+..-..|+.+|.+
T Consensus 639 g~~eL~~ql~~a~~t~a~l~~~~~~~~gei~alrl 673 (828)
T PF04094_consen 639 GEAELVSQLAAAQSTLADLQRLVQDQAGEIAALRL 673 (828)
T ss_pred CchhHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHh
Confidence 47799999999999999999999999999999987
No 316
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=21.87 E-value=1.2e+03 Score=26.43 Aligned_cols=54 Identities=20% Similarity=0.198 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 014127 162 LLAKLETANADLARALA-AAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 216 (430)
Q Consensus 162 REa~LE~enae~akALA-~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~ 216 (430)
|..++...+.+. +.++ ..|..+.+-..+++.|+.++.........|++.++++.
T Consensus 358 ~~~~~~~~~~e~-~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~ 412 (656)
T PRK06975 358 RQQANDAQTAEL-RVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLS 412 (656)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444 2222 23333444445556666666666666666666655553
No 317
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=21.85 E-value=8.6e+02 Score=28.05 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHh
Q 014127 158 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 211 (430)
Q Consensus 158 qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqr 211 (430)
+...+-.+|.-+++++-.-+-.|++.+..++.+...|.-.++..++.+.+|+++
T Consensus 97 ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 97 ELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 445556678888999999999999999999999999999999999999998874
No 318
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=21.75 E-value=5.4e+02 Score=25.13 Aligned_cols=32 Identities=22% Similarity=0.138 Sum_probs=20.6
Q ss_pred HHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 014127 184 LEMETNQVAELRQQTELKEVAHEELSQRNSNT 215 (430)
Q Consensus 184 lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~ 215 (430)
.++-|.+...++-+++.++...+.|+.-+.++
T Consensus 127 ~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka 158 (262)
T PF14257_consen 127 SEDVTEQYVDLEARLKNLEAEEERLLELLEKA 158 (262)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456677777777777777777666555433
No 319
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=21.67 E-value=7.7e+02 Score=24.18 Aligned_cols=37 Identities=8% Similarity=0.216 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 014127 238 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPT 274 (430)
Q Consensus 238 l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS 274 (430)
.++|...|..+-...+.+|.++...|..|..+...|.
T Consensus 152 ~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~~~ 188 (192)
T PF11180_consen 152 ARQEAQALEAERRAAQAQLRQLQRQVRQLQRQANEPI 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4556666777777788888888888888888876654
No 320
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=21.06 E-value=7.5e+02 Score=23.77 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 014127 160 LQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 216 (430)
Q Consensus 160 ~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~ 216 (430)
+.+-...+.....|...+...+..++.=..++..|+.++.........|.-+...+.
T Consensus 91 l~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~ 147 (219)
T TIGR02977 91 LIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAAS 147 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566667777777777777777777777777777777777777777777665554
No 321
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=20.98 E-value=4e+02 Score=20.56 Aligned_cols=59 Identities=12% Similarity=0.171 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCh-----hHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 240 AEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTE-----VEIELKRRLGQLTDHLIQKQAQVE 299 (430)
Q Consensus 240 qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~-----~e~ELE~RL~~LTe~LIqKQtqLE 299 (430)
..+..++.+|...+..+..+...-+.| .....+.. .-..|..|...|...+-.++..||
T Consensus 41 ~~~~~~~~ei~~~~~~l~~l~~~~~~L-~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~Le 104 (105)
T PF00435_consen 41 KKHKELQEEIESRQERLESLNEQAQQL-IDSGPEDSDEIQEKLEELNQRWEALCELVEERRQKLE 104 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 355566677777777777777666666 33333322 356788888888888888888776
No 322
>PF14851 FAM176: FAM176 family
Probab=20.80 E-value=2.2e+02 Score=26.84 Aligned_cols=20 Identities=40% Similarity=0.559 Sum_probs=13.8
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 014127 70 SESEREREERRKLKEKILAE 89 (430)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~ 89 (430)
|.+|-+|.+|=.+|++|+.|
T Consensus 115 sae~~e~A~rlEeRe~iirE 134 (153)
T PF14851_consen 115 SAEELERAQRLEERERIIRE 134 (153)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 44666777777777777765
No 323
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=20.76 E-value=5.2e+02 Score=25.06 Aligned_cols=21 Identities=0% Similarity=-0.015 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhhhhccc
Q 014127 197 QTELKEVAHEELSQRNSNTHQ 217 (430)
Q Consensus 197 kv~~lE~~~~sLrqrl~~~~q 217 (430)
+++.+..-+...|..+.++++
T Consensus 106 Elq~mr~~ln~FR~qm~dlE~ 126 (179)
T PF14723_consen 106 ELQQMRRSLNSFREQMMDLEL 126 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666644
No 324
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.76 E-value=3.8e+02 Score=28.62 Aligned_cols=77 Identities=22% Similarity=0.227 Sum_probs=40.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 188 TNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTR 267 (430)
Q Consensus 188 ~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr 267 (430)
.+++-.|..+...+..+.++|+.+.-...+.. -.......+.+-+.++...+.+++..++.++..+++++..+-
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i------~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEI------GQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELL 100 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555543332221 110001011223556666777777777777777777777665
Q ss_pred HHh
Q 014127 268 KEI 270 (430)
Q Consensus 268 ~~l 270 (430)
..+
T Consensus 101 ~~i 103 (425)
T PRK05431 101 LRI 103 (425)
T ss_pred HhC
Confidence 544
No 325
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=20.74 E-value=55 Score=33.49 Aligned_cols=13 Identities=38% Similarity=0.481 Sum_probs=5.4
Q ss_pred CCCCC-CCCcchHH
Q 014127 61 SNSDS-SSSESESE 73 (430)
Q Consensus 61 ~~~~~-~~~~~~~~ 73 (430)
||+|| |++|+++|
T Consensus 248 ~d~e~esd~de~Ee 261 (303)
T KOG3064|consen 248 SDSEDESDSDEIEE 261 (303)
T ss_pred cccccCCchhhHHH
Confidence 34444 34444444
No 326
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.63 E-value=9.3e+02 Score=24.69 Aligned_cols=63 Identities=10% Similarity=0.121 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 014127 153 NNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 215 (430)
Q Consensus 153 ~aTR~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~ 215 (430)
...--+...-...++.+...+-.-+...+.++++...+++.+.++++.++.+.+.++.+|..-
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555566677777777777777888888888888888888888888887777766654
No 327
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=20.52 E-value=7.2e+02 Score=29.64 Aligned_cols=21 Identities=33% Similarity=0.325 Sum_probs=9.6
Q ss_pred hHHhhHHHHHHHHHHHHHHhH
Q 014127 108 RLEGEKQSLEKILEERAKQQV 128 (430)
Q Consensus 108 rl~~ek~~l~k~l~e~~~~q~ 128 (430)
|++.|++---|.-++.++.|.
T Consensus 955 ~~k~e~e~kRK~eEeqr~~qe 975 (1259)
T KOG0163|consen 955 RAKAEMETKRKAEEEQRKAQE 975 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 344444444444444444443
No 328
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=20.42 E-value=42 Score=37.57 Aligned_cols=28 Identities=57% Similarity=0.576 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCCCCC-CCCcchHHHHHH
Q 014127 50 GSSSTSEDGSDSNSDS-SSSESESERERE 77 (430)
Q Consensus 50 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 77 (430)
|+++.|+++||+++.+ ||+|+-+.-.|+
T Consensus 670 ~sss~ses~s~s~~s~ssSsd~s~~~~re 698 (739)
T KOG2140|consen 670 SSSSDSESESDSGDSSSSSSDSSSKSTRE 698 (739)
T ss_pred ccccccccCCCCCCcccccchhccchhhc
Confidence 3344444444333222 344443333344
No 329
>PF14770 TMEM18: Transmembrane protein 18
Probab=20.41 E-value=60 Score=29.30 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCc------cccccchhhhhhhhhc
Q 014127 389 LVYLVCLHLWVIYILLSHSQSSA------EARSGAVFSLENINNT 427 (430)
Q Consensus 389 i~Y~v~LHlwV~~vL~~~s~~s~------~~rsga~~s~e~~~~~ 427 (430)
++|+++.|+..+++++..-.... ..-.+-++|.|.||.-
T Consensus 17 l~~L~~fH~~~~~~~~~tr~~~~~q~~lf~~ll~~v~~aE~iN~~ 61 (123)
T PF14770_consen 17 LIGLIAFHVLLLLLAILTRRRYNFQMILFLILLLLVYCAEYINEY 61 (123)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666544444433222211 1223456777777753
No 330
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=20.36 E-value=7.3e+02 Score=23.42 Aligned_cols=55 Identities=35% Similarity=0.380 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhh
Q 014127 158 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRN 212 (430)
Q Consensus 158 qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl 212 (430)
.|+.+...++.....|...+......++.=...+..|+.++..+......|..+.
T Consensus 88 ~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 88 EALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666665555555555555555555555555555555443
No 331
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=20.35 E-value=1.3e+03 Score=26.37 Aligned_cols=41 Identities=20% Similarity=0.215 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 014127 281 KRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDE 321 (430)
Q Consensus 281 E~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~e 321 (430)
.++|..+-....+||.++-.|...+.+..-+|++.....++
T Consensus 395 ~q~I~~frqlv~e~QeqIr~LiK~Nsaakt~L~q~~~E~~~ 435 (632)
T PF14817_consen 395 WQRILDFRQLVSEKQEQIRALIKGNSAAKTQLEQSPAEAQE 435 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhChHHHHH
Confidence 56788888899999999999999999999999997654444
No 332
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=20.33 E-value=3.7e+02 Score=26.84 Aligned_cols=44 Identities=32% Similarity=0.355 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 014127 276 VEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLL 319 (430)
Q Consensus 276 ~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~ 319 (430)
....|...|..|+...-+++.+|+.|..|+..+..|-..++..+
T Consensus 209 ~~~rL~~~l~~le~~~~~~~~~l~~l~~E~~~I~~re~elq~~l 252 (254)
T PF15458_consen 209 CLERLRESLSSLEDSKSQLQQQLESLEKEKEEIEEREKELQELL 252 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47889999999999999999999999999999999888877654
Done!