Query 014127
Match_columns 430
No_of_seqs 121 out of 137
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 05:57:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 97.2 0.00055 1.9E-08 77.7 8.5 18 103-120 884-901 (1184)
2 1c1g_A Tropomyosin; contractIl 96.6 0.35 1.2E-05 42.7 34.0 35 280-314 242-276 (284)
3 3na7_A HP0958; flagellar bioge 96.6 0.35 1.2E-05 45.9 20.7 68 145-212 16-83 (256)
4 3vkg_A Dynein heavy chain, cyt 96.4 0.83 2.8E-05 57.4 27.2 157 159-321 1943-2102(3245)
5 2dfs_A Myosin-5A; myosin-V, in 96.2 0.2 6.9E-06 56.9 19.2 60 254-316 984-1043(1080)
6 2v71_A Nuclear distribution pr 95.9 0.82 2.8E-05 42.6 18.9 117 188-320 55-171 (189)
7 3na7_A HP0958; flagellar bioge 94.4 2.6 9E-05 39.8 17.8 128 161-302 25-152 (256)
8 3vkg_A Dynein heavy chain, cyt 94.2 2.3 7.9E-05 53.6 21.1 27 97-123 1927-1953(3245)
9 2b9c_A Striated-muscle alpha t 93.4 0.53 1.8E-05 42.0 10.2 135 148-291 11-145 (147)
10 2v66_B Nuclear distribution pr 92.4 2 6.8E-05 37.0 11.9 105 190-310 4-108 (111)
11 3oja_B Anopheles plasmodium-re 91.3 8.3 0.00028 39.5 17.4 30 97-126 456-485 (597)
12 3ol1_A Vimentin; structural ge 90.3 1.4 4.9E-05 37.7 9.0 37 257-293 65-101 (119)
13 2ocy_A RAB guanine nucleotide 89.8 11 0.00038 34.0 14.9 58 253-310 78-143 (154)
14 2fxo_A Myosin heavy chain, car 87.1 14 0.00046 31.8 17.6 87 130-216 38-124 (129)
15 2v71_A Nuclear distribution pr 86.1 22 0.00074 33.1 16.5 82 130-218 32-117 (189)
16 3swk_A Vimentin; cytoskeleton, 85.2 2.4 8.3E-05 34.5 6.9 36 257-292 45-80 (86)
17 3oja_B Anopheles plasmodium-re 84.4 29 0.00098 35.5 16.2 41 280-320 542-582 (597)
18 2fxo_A Myosin heavy chain, car 84.4 19 0.00064 30.9 16.5 79 237-322 45-123 (129)
19 3q8t_A Beclin-1; autophagy, AT 83.7 16 0.00054 30.2 11.3 42 276-317 54-95 (96)
20 2dfs_A Myosin-5A; myosin-V, in 83.0 28 0.00095 39.7 16.6 24 193-216 981-1004(1080)
21 4gkw_A Spindle assembly abnorm 82.3 23 0.00077 31.7 12.3 125 187-321 9-137 (167)
22 3mq9_A Bone marrow stromal ant 81.1 17 0.00059 36.3 12.8 32 193-224 394-425 (471)
23 3o0z_A RHO-associated protein 80.1 36 0.0012 31.1 14.5 21 249-269 92-112 (168)
24 2v4h_A NF-kappa-B essential mo 77.6 23 0.0008 30.4 10.5 73 244-320 35-107 (110)
25 3u59_A Tropomyosin beta chain; 76.2 31 0.0011 28.3 11.0 69 247-315 30-98 (101)
26 1m1j_C Fibrinogen gamma chain; 73.0 39 0.0013 34.6 12.8 47 172-218 24-70 (409)
27 2lw1_A ABC transporter ATP-bin 72.6 21 0.00072 28.6 8.7 57 248-305 23-79 (89)
28 1f5n_A Interferon-induced guan 72.2 1.1E+02 0.0036 32.7 18.7 113 157-271 462-584 (592)
29 1x79_B RAB GTPase binding effe 69.2 28 0.00097 29.9 9.1 102 192-308 2-103 (112)
30 3o0z_A RHO-associated protein 68.5 71 0.0024 29.2 18.2 21 301-321 130-154 (168)
31 3ghg_A Fibrinogen alpha chain; 67.4 79 0.0027 33.8 13.7 16 300-315 230-245 (562)
32 2ocy_A RAB guanine nucleotide 65.1 79 0.0027 28.4 19.1 100 166-273 49-148 (154)
33 3ol1_A Vimentin; structural ge 65.1 63 0.0022 27.3 13.5 43 172-214 17-59 (119)
34 2i1j_A Moesin; FERM, coiled-co 65.0 8.2 0.00028 40.9 6.0 60 156-215 330-389 (575)
35 3bas_A Myosin heavy chain, str 64.8 48 0.0017 26.7 9.3 41 279-319 46-86 (89)
36 3s4r_A Vimentin; alpha-helix, 64.6 57 0.002 26.7 10.3 70 241-319 17-86 (93)
37 2v4h_A NF-kappa-B essential mo 64.3 64 0.0022 27.7 10.2 27 229-255 76-105 (110)
38 3viq_B Mating-type switching p 63.7 20 0.00068 29.5 6.7 58 243-300 4-69 (85)
39 3u1c_A Tropomyosin alpha-1 cha 62.5 65 0.0022 26.6 11.5 35 281-315 64-98 (101)
40 2eqb_B RAB guanine nucleotide 62.2 70 0.0024 26.8 13.9 66 158-229 9-74 (97)
41 1l8d_A DNA double-strand break 61.2 65 0.0022 26.1 11.4 32 239-270 70-101 (112)
42 3mq7_A Bone marrow stromal ant 58.7 82 0.0028 27.4 10.0 37 277-313 73-109 (121)
43 3u1c_A Tropomyosin alpha-1 cha 58.7 76 0.0026 26.1 11.9 6 206-211 47-52 (101)
44 3cvf_A Homer-3, homer protein 57.9 37 0.0012 27.5 7.3 59 156-214 8-73 (79)
45 2efr_A General control protein 55.5 1.2E+02 0.004 27.3 20.8 37 158-194 67-103 (155)
46 1deq_A Fibrinogen (alpha chain 55.0 1.4E+02 0.0046 30.7 12.5 22 249-270 136-157 (390)
47 3hnw_A Uncharacterized protein 55.0 49 0.0017 28.9 8.3 73 194-268 66-138 (138)
48 3m9b_A Proteasome-associated A 53.1 9.5 0.00032 37.0 3.6 70 256-325 26-97 (251)
49 2zqm_A Prefoldin beta subunit 52.8 90 0.0031 25.2 9.4 38 171-208 9-46 (117)
50 2xdj_A Uncharacterized protein 52.4 79 0.0027 25.5 8.5 55 161-215 6-60 (83)
51 2efr_A General control protein 50.2 1.4E+02 0.0048 26.7 21.4 9 279-287 127-135 (155)
52 3cve_A Homer protein homolog 1 47.7 1E+02 0.0036 24.4 9.1 57 158-214 4-67 (72)
53 2e7s_A RAB guanine nucleotide 47.5 17 0.00057 32.3 4.0 32 276-307 97-128 (135)
54 1go4_E MAD1 (mitotic arrest de 47.1 37 0.0013 28.6 5.9 26 190-215 13-38 (100)
55 2e7s_A RAB guanine nucleotide 46.7 58 0.002 28.8 7.3 48 176-229 47-94 (135)
56 1x79_B RAB GTPase binding effe 45.8 1.4E+02 0.0049 25.5 10.5 60 105-164 21-80 (112)
57 2yy0_A C-MYC-binding protein; 41.9 54 0.0018 24.4 5.5 26 247-272 26-51 (53)
58 4dk0_A Putative MACA; alpha-ha 41.2 1.7E+02 0.0058 27.7 10.4 34 239-272 121-154 (369)
59 3q8t_A Beclin-1; autophagy, AT 41.0 1.5E+02 0.0051 24.3 10.7 25 277-301 69-93 (96)
60 3i00_A HIP-I, huntingtin-inter 40.1 1.7E+02 0.0059 25.0 9.2 67 249-318 17-83 (120)
61 4dk0_A Putative MACA; alpha-ha 38.8 1.5E+02 0.0052 28.0 9.7 81 235-319 72-152 (369)
62 3jsv_C NF-kappa-B essential mo 38.2 1.5E+02 0.0053 24.7 8.2 23 165-187 6-28 (94)
63 2jee_A YIIU; FTSZ, septum, coi 37.4 1.4E+02 0.0048 24.2 7.7 62 242-303 8-76 (81)
64 1fxk_A Prefoldin; archaeal pro 37.0 1.6E+02 0.0053 23.4 9.9 93 174-270 7-102 (107)
65 3cve_A Homer protein homolog 1 37.0 1.6E+02 0.0053 23.4 8.1 54 245-298 5-58 (72)
66 2xdj_A Uncharacterized protein 36.7 1E+02 0.0035 24.8 6.8 43 279-321 10-52 (83)
67 3tnu_A Keratin, type I cytoske 36.7 2E+02 0.0067 24.4 10.9 12 259-270 117-128 (131)
68 2i1j_A Moesin; FERM, coiled-co 36.4 56 0.0019 34.5 6.7 52 163-214 407-458 (575)
69 3tnu_B Keratin, type II cytosk 36.2 2E+02 0.0067 24.3 11.2 13 258-270 114-126 (129)
70 3a7p_A Autophagy protein 16; c 35.9 98 0.0033 27.9 7.2 40 279-318 79-118 (152)
71 3fpp_A Macrolide-specific effl 35.0 1.1E+02 0.0038 28.8 7.9 79 235-317 71-149 (341)
72 2dgc_A Protein (GCN4); basic d 34.9 78 0.0027 24.1 5.6 34 238-271 28-61 (63)
73 3oja_A Leucine-rich immune mol 33.8 3.6E+02 0.012 26.7 17.0 15 285-299 470-484 (487)
74 3he4_A Synzip6; heterodimeric 33.3 43 0.0015 24.9 3.7 25 102-126 22-46 (56)
75 3nmd_A CGMP dependent protein 31.9 1.9E+02 0.0064 23.1 7.4 48 277-324 21-68 (72)
76 1g6u_A Domain swapped dimer; d 31.4 1.2E+02 0.0041 21.9 5.6 19 207-225 4-22 (48)
77 2v66_B Nuclear distribution pr 31.4 2.4E+02 0.0083 24.0 14.6 87 105-202 11-104 (111)
78 1ci6_A Transcription factor AT 30.8 1.4E+02 0.0047 22.6 6.3 31 239-269 29-59 (63)
79 1ses_A Seryl-tRNA synthetase; 30.7 1.3E+02 0.0044 30.5 8.0 75 188-270 27-101 (421)
80 3mov_A Lamin-B1; LMNB1, B-type 30.6 2.2E+02 0.0076 23.3 9.5 40 101-140 9-48 (95)
81 3efg_A Protein SLYX homolog; x 30.6 1.4E+02 0.0048 23.7 6.6 40 159-198 12-51 (78)
82 2oqq_A Transcription factor HY 30.0 1.1E+02 0.0039 22.0 5.3 29 242-270 12-40 (42)
83 3ghg_C Fibrinogen gamma chain; 30.0 4E+02 0.014 27.3 11.5 44 172-215 24-67 (411)
84 2b9c_A Striated-muscle alpha t 29.7 2E+02 0.0069 25.3 8.2 17 277-293 103-119 (147)
85 3iox_A AGI/II, PA; alpha helix 29.3 5.3E+02 0.018 27.2 14.6 14 415-428 304-317 (497)
86 4dzn_A Coiled-coil peptide CC- 29.1 1.1E+02 0.0039 20.5 4.8 18 238-255 7-24 (33)
87 1t2k_D Cyclic-AMP-dependent tr 29.0 1.1E+02 0.0038 22.7 5.5 29 241-269 30-58 (61)
88 3jsv_C NF-kappa-B essential mo 28.5 1.9E+02 0.0064 24.2 7.2 77 242-318 4-83 (94)
89 3swk_A Vimentin; cytoskeleton, 28.4 2.3E+02 0.0078 22.7 10.2 19 250-268 66-84 (86)
90 3m91_A Proteasome-associated A 27.6 1.8E+02 0.0063 21.5 6.3 33 158-190 13-45 (51)
91 3a7p_A Autophagy protein 16; c 27.6 3.3E+02 0.011 24.4 9.2 13 130-142 17-29 (152)
92 1wle_A Seryl-tRNA synthetase; 27.5 2E+02 0.007 29.9 9.0 35 236-270 119-153 (501)
93 3cvf_A Homer-3, homer protein 27.1 1.5E+02 0.0053 23.8 6.3 51 246-296 12-62 (79)
94 3tnu_B Keratin, type II cytosk 26.8 2.9E+02 0.0098 23.3 9.7 48 161-211 50-97 (129)
95 2wwb_C SEC61BETA, protein tran 26.3 14 0.00049 31.0 0.1 14 386-399 78-91 (96)
96 4g1a_A AQ-C16C19 peptide; heli 26.0 22 0.00074 23.9 0.9 28 191-218 2-29 (32)
97 3lay_A Zinc resistance-associa 25.5 3.8E+02 0.013 24.2 9.6 28 269-300 104-131 (175)
98 2ww9_C Protein transport prote 24.4 23 0.00079 29.3 1.0 16 386-401 69-84 (87)
99 2f1m_A Acriflavine resistance 24.2 4E+02 0.014 24.1 10.2 43 241-283 61-103 (277)
100 3mq9_A Bone marrow stromal ant 24.0 5.3E+02 0.018 25.4 13.9 19 197-215 444-462 (471)
101 3nmd_A CGMP dependent protein 24.0 2.7E+02 0.0094 22.1 7.3 45 172-216 23-67 (72)
102 3vmx_A Voltage-gated hydrogen 23.9 2.2E+02 0.0076 21.0 6.5 36 237-272 8-43 (48)
103 3fpp_A Macrolide-specific effl 23.7 3.3E+02 0.011 25.4 9.1 32 241-272 122-153 (341)
104 3m48_A General control protein 21.9 1.7E+02 0.006 20.1 4.7 28 244-271 4-31 (33)
105 2dq0_A Seryl-tRNA synthetase; 21.9 1.6E+02 0.0055 30.2 6.9 71 196-266 31-102 (455)
106 3s4r_A Vimentin; alpha-helix, 21.4 3.3E+02 0.011 22.1 12.8 70 189-269 23-92 (93)
107 3tnu_A Keratin, type I cytoske 21.1 3.8E+02 0.013 22.6 9.1 45 164-211 55-99 (131)
108 2wq1_A General control protein 20.9 1.8E+02 0.0061 20.0 4.6 27 244-270 4-30 (33)
109 3qh9_A Liprin-beta-2; coiled-c 20.7 3.4E+02 0.012 22.0 9.6 25 247-271 54-78 (81)
110 2w83_C C-JUN-amino-terminal ki 20.6 3.4E+02 0.012 21.9 8.8 33 233-265 44-76 (77)
111 3qne_A Seryl-tRNA synthetase, 20.4 1.7E+02 0.006 30.5 6.8 71 196-266 33-104 (485)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.22 E-value=0.00055 Score=77.75 Aligned_cols=18 Identities=33% Similarity=0.324 Sum_probs=8.3
Q ss_pred HHHHHhHHhhHHHHHHHH
Q 014127 103 ENMVARLEGEKQSLEKIL 120 (430)
Q Consensus 103 e~~~arl~~ek~~l~k~l 120 (430)
+.-+..|+.++..+..-+
T Consensus 884 e~~l~~Le~e~~~l~~~L 901 (1184)
T 1i84_S 884 EQKHTQLCEEKNLLQEKL 901 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444555555544433
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.59 E-value=0.35 Score=42.72 Aligned_cols=35 Identities=9% Similarity=0.136 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 014127 280 LKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEA 314 (430)
Q Consensus 280 LE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLER 314 (430)
++..+..+...+-..+..+..+....+.+..+++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (284)
T 1c1g_A 242 AERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH 276 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444433344444444444444444444
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.58 E-value=0.35 Score=45.91 Aligned_cols=68 Identities=12% Similarity=0.021 Sum_probs=33.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhh
Q 014127 145 FELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRN 212 (430)
Q Consensus 145 ~elE~~aH~aTR~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl 212 (430)
+..+...-...+....+....|+.+.+.+...+...+-.+++-..++..++..+.........++.++
T Consensus 16 lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 16 LDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555555555555555555555544444444444444444444444443
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.37 E-value=0.83 Score=57.37 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHH
Q 014127 159 ALQLLAKLETANADLARALAAAQK---KLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFER 235 (430)
Q Consensus 159 A~aREa~LE~enae~akALA~~Qr---~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~ 235 (430)
...-+.+|++.+.+..+.|..+.. ..+.+...+...+.+++..+.+....+...+.--....|+ .=.+.+.
T Consensus 1943 L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa------~Pkr~~l 2016 (3245)
T 3vkg_A 1943 LAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPT------GPLREEV 2016 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC------ChHHHHH
Confidence 334445555555555555544433 3333444455555555444444443333222111111111 1111223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 014127 236 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 315 (430)
Q Consensus 236 e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERl 315 (430)
+.+++++...+++|..++++++.+++.|+.|+.+....+.....|+..+......|..=+.-+..|.+|+.-|.-+.+.+
T Consensus 2017 ~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l 2096 (3245)
T 3vkg_A 2017 EQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENF 2096 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Confidence 34455666667788888888888888899888888776667788999999999999999999999999999999999988
Q ss_pred HHHHHh
Q 014127 316 SRLLDE 321 (430)
Q Consensus 316 e~~~~e 321 (430)
+..+..
T Consensus 2097 ~~~~~~ 2102 (3245)
T 3vkg_A 2097 NTQMST 2102 (3245)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776654
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.17 E-value=0.2 Score=56.92 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 014127 254 DKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 316 (430)
Q Consensus 254 ~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle 316 (430)
.+++.++++|+.++.++..-+.....+|.++.++.+.| |..+..|..|++-|+-|++.++
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L---~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET---EQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333332223344555555555433 3555555556666666665555
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.94 E-value=0.82 Score=42.58 Aligned_cols=117 Identities=13% Similarity=0.143 Sum_probs=76.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 188 TNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTR 267 (430)
Q Consensus 188 ~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr 267 (430)
..+...|..++..+..++++++.++...+.... .....++.|+..+......++..+..+|+....|.
T Consensus 55 Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~------------~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlE 122 (189)
T 2v71_A 55 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSY------------KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 122 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 345667778888888888888887655543211 11223455667777778888888888888888887
Q ss_pred HHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 014127 268 KEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLD 320 (430)
Q Consensus 268 ~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~ 320 (430)
...-..+..-.+++.+|+...+..+-=++-|+ ||..|...+.|+.--.+
T Consensus 123 r~~R~~~~SleD~e~kln~aiEr~alLE~El~----EKe~l~~~~QRLkdE~r 171 (189)
T 2v71_A 123 RAKRATIMSLEDFEQRLNQAIERNAFLESELD----EKESLLVSVQRLKDEAR 171 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCC--------
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 76655555688999999887776665555554 78888888888765333
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.42 E-value=2.6 Score=39.81 Aligned_cols=128 Identities=14% Similarity=0.118 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHH
Q 014127 161 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEA 240 (430)
Q Consensus 161 aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~q 240 (430)
.+...|..+..++...++..+..+..-...+..+..++..++...+.++.++......... -...-|..-+..
T Consensus 25 ~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~-------v~~~kE~~aL~k 97 (256)
T 3na7_A 25 PLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE-------IKSERELRSLNI 97 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CSSSSHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------cCCHHHHHHHHH
Confidence 3444455666666666666666666666666666666666666666666666665433211 112223333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 241 EYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALS 302 (430)
Q Consensus 241 E~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLs 302 (430)
|+.++..++..+++++..+...|+.++.. ..+++.++..+...|-.+++.++.-.
T Consensus 98 Eie~~~~~i~~lE~eile~~e~ie~~~~~-------l~~~~~~l~~~~~~l~~~~~~~~~~~ 152 (256)
T 3na7_A 98 EEDIAKERSNQANREIENLQNEIKRKSEK-------QEDLKKEMLELEKLALELESLVENEV 152 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444333 23444444455555555544444433
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.23 E-value=2.3 Score=53.57 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 014127 97 DAIKERENMVARLEGEKQSLEKILEER 123 (430)
Q Consensus 97 ~~i~ere~~~arl~~ek~~l~k~l~e~ 123 (430)
.-|.|=..-|+.|..+-+.++..|++.
T Consensus 1927 ~KL~et~~~V~~l~~~L~~~~~~L~~k 1953 (3245)
T 3vkg_A 1927 KKLRDTEAQVKDLQVSLAQKNRELDVK 1953 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555655555555555555443
No 9
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=93.41 E-value=0.53 Score=42.03 Aligned_cols=135 Identities=16% Similarity=0.208 Sum_probs=62.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHh
Q 014127 148 EKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAA 227 (430)
Q Consensus 148 E~~aH~aTR~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a 227 (430)
++.+...--..++.++.+.+....+..++.-.+...-...-.++..|+.+++....-..+--++...+..+
T Consensus 11 eLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RK--------- 81 (147)
T 2b9c_A 11 ELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARK--------- 81 (147)
T ss_dssp CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---------
Confidence 33333333344555555555555555554444333333333455555555554444333322222222111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHH
Q 014127 228 SKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHL 291 (430)
Q Consensus 228 ~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~L 291 (430)
..-++.+.+...........++..|+..+..+-..+.-|..+-..++.-+..++.+|+.||+.|
T Consensus 82 l~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L~~kL 145 (147)
T 2b9c_A 82 LVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKKLV 145 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 0111111111111222233344445555555555554444444445566889999999998765
No 10
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=92.36 E-value=2 Score=36.97 Aligned_cols=105 Identities=17% Similarity=0.197 Sum_probs=76.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 190 QVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE 269 (430)
Q Consensus 190 rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ 269 (430)
+...|..++..+..++++|+.++...+.... . ..-.++.|+..+.+.-..++..+..+|+....|.++
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~---~---------~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSY---K---------QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 5667899999999999999998776543311 1 112355667777777788888899999888888777
Q ss_pred hCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 014127 270 IEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAF 310 (430)
Q Consensus 270 ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~l 310 (430)
.-..++.-.++|.+|+.. |.+-+-||.=.-||-.|..
T Consensus 72 ~R~t~~SLeD~E~k~n~a----iErnalLE~El~EKe~L~~ 108 (111)
T 2v66_B 72 KRATIVSLEDFEQRLNQA----IERNAFLESELDEKESLLV 108 (111)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 655555677999998765 5566677766667777654
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.28 E-value=8.3 Score=39.49 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 014127 97 DAIKERENMVARLEGEKQSLEKILEERAKQ 126 (430)
Q Consensus 97 ~~i~ere~~~arl~~ek~~l~k~l~e~~~~ 126 (430)
+.|.+.+..+.+|+.+....++.+....+.
T Consensus 456 ~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~ 485 (597)
T 3oja_B 456 AEVNELRAEVQQLTNEQIQQEQLLQGLHAE 485 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777766666554444
No 12
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=90.29 E-value=1.4 Score=37.66 Aligned_cols=37 Identities=14% Similarity=0.441 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHH
Q 014127 257 KKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQ 293 (430)
Q Consensus 257 k~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIq 293 (430)
..+|.+|..+|+.+..-+....+||.++.+|++-|.-
T Consensus 65 ~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 65 EEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888877777788999999888886654
No 13
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.83 E-value=11 Score=34.02 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhCC---C-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 014127 253 EDKAKKLEGNIEMTRKEIED---P-----TEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAF 310 (430)
Q Consensus 253 q~klk~lE~EIq~Lr~~ls~---p-----S~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~l 310 (430)
+.....+++|++.|..++=. . ......++.|...|-.+|-.|.+.|+++......|..
T Consensus 78 E~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 78 EEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554411 0 1136678999999999999999999986655554443
No 14
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=87.13 E-value=14 Score=31.77 Aligned_cols=87 Identities=21% Similarity=0.225 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Q 014127 130 EASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 209 (430)
Q Consensus 130 ea~el~~~m~e~~~A~elE~~aH~aTR~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLr 209 (430)
+..+-+..++.-...+..++++-...--++..|-..|...-.++..-|..++..+++.-.+...|...-..++..|..|+
T Consensus 38 ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk 117 (129)
T 2fxo_A 38 ELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELK 117 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666677788888888888889999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhcc
Q 014127 210 QRNSNTH 216 (430)
Q Consensus 210 qrl~~~~ 216 (430)
..|.+..
T Consensus 118 ~~led~e 124 (129)
T 2fxo_A 118 RDIDDLE 124 (129)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888764
No 15
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=86.08 E-value=22 Score=33.07 Aligned_cols=82 Identities=24% Similarity=0.217 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHhHHHHHHHHH
Q 014127 130 EASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQ----VAELRQQTELKEVAH 205 (430)
Q Consensus 130 ea~el~~~m~e~~~A~elE~~aH~aTR~qA~aREa~LE~enae~akALA~~Qr~lee~~~r----vaeLeqkv~~lE~~~ 205 (430)
|-.|-|++.-+--..++-++. ++..|...|...|..+..-+-....+++....+ +..|...+..+...+
T Consensus 32 El~EFqesSrELE~ELE~eL~-------~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~ 104 (189)
T 2v71_A 32 ELVEFQEGSRELEAELEAQLV-------QAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIK 104 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555444444444443 333444555555555555555555555444333 555555555555555
Q ss_pred HHHHHhhhhcccc
Q 014127 206 EELSQRNSNTHQT 218 (430)
Q Consensus 206 ~sLrqrl~~~~q~ 218 (430)
+.|+.+|.++.+.
T Consensus 105 ~~l~~~ireLEq~ 117 (189)
T 2v71_A 105 EQLHKYVRELEQA 117 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5565555555443
No 16
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=85.22 E-value=2.4 Score=34.48 Aligned_cols=36 Identities=14% Similarity=0.477 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHH
Q 014127 257 KKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLI 292 (430)
Q Consensus 257 k~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LI 292 (430)
..+|.+|..||+.+...|-...+||.++.+|++-|.
T Consensus 45 ~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 45 EEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999988877788999999999988764
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.44 E-value=29 Score=35.46 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 014127 280 LKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLD 320 (430)
Q Consensus 280 LE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~ 320 (430)
+++....|=..+=.++.+++.+..|.+.+..++..+.....
T Consensus 542 ~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 542 LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444555667777788888888888887766443
No 18
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=84.44 E-value=19 Score=30.90 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 014127 237 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 316 (430)
Q Consensus 237 ~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle 316 (430)
.+.+|...|...|..-++-+...+....+| .....+|+..|+.|.+.|-.--.+...|..++.-+.-.+..++
T Consensus 45 ~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L-------~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk 117 (129)
T 2fxo_A 45 SLLQEKNDLQLQVQAEQDNLADAEERCDQL-------IKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELK 117 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333333444444433 1236789999999999999999999999999999999998888
Q ss_pred HHHHhc
Q 014127 317 RLLDEN 322 (430)
Q Consensus 317 ~~~~e~ 322 (430)
..++..
T Consensus 118 ~~led~ 123 (129)
T 2fxo_A 118 RDIDDL 123 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766643
No 19
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=83.70 E-value=16 Score=30.23 Aligned_cols=42 Identities=5% Similarity=0.268 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 014127 276 VEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 317 (430)
Q Consensus 276 ~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~ 317 (430)
.+..+=+.++.+--.|+.-|..+.+|.+...--..+|++|+.
T Consensus 54 eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 54 EEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355666677788888888888888888888888888888763
No 20
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=82.99 E-value=28 Score=39.69 Aligned_cols=24 Identities=8% Similarity=0.008 Sum_probs=13.4
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhcc
Q 014127 193 ELRQQTELKEVAHEELSQRNSNTH 216 (430)
Q Consensus 193 eLeqkv~~lE~~~~sLrqrl~~~~ 216 (430)
.++.++..++.+.+.|+.++++..
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~~ 1004 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQTQ 1004 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666655555543
No 21
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=82.29 E-value=23 Score=31.69 Aligned_cols=125 Identities=18% Similarity=0.183 Sum_probs=65.9
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHhhhhccccc-chhhHHHh--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 187 ETNQVAELRQQTELKEVAHEELSQRNSNTHQTG-IYLKRLAA--SKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNI 263 (430)
Q Consensus 187 ~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~-~~a~q~~a--~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EI 263 (430)
+-..++.|+..++.+..+.++.+.+|.-..... ..-..+.+ .+. -..+.|+..|.+++..+|-.+.+.++.+
T Consensus 9 K~~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn-----~~HQKEi~~Lrae~~~~QRn~~K~~~~L 83 (167)
T 4gkw_A 9 KEDEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRN-----VAHQKEIGKLRAELGTAQRNLEKADQLL 83 (167)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc-----cHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 334566666666666666665555544332211 00000110 000 1123344444444444444444444333
Q ss_pred HHHHHHhCCCChhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 014127 264 EMTRKEIEDPTEVEIELK-RRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDE 321 (430)
Q Consensus 264 q~Lr~~ls~pS~~e~ELE-~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~e 321 (430)
.+-..+- .+.-|+ +.|+.|---|-.|-+++|+|+.-+-.|+..||.-.-..++
T Consensus 84 krn~~qQ-----nQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E 137 (167)
T 4gkw_A 84 KRNSQQQ-----NQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAE 137 (167)
T ss_dssp HHHHHHH-----HHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHH-----hHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211111 222232 4578888889999999999999999999999985544443
No 22
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=81.11 E-value=17 Score=36.28 Aligned_cols=32 Identities=16% Similarity=0.105 Sum_probs=15.8
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhcccccchhhH
Q 014127 193 ELRQQTELKEVAHEELSQRNSNTHQTGIYLKR 224 (430)
Q Consensus 193 eLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q 224 (430)
+.+.....++..++.++-++.++.....+.|.
T Consensus 394 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (471)
T 3mq9_A 394 EARNVTHLLQQELTEAQKGFQDVEAQAATANH 425 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcch
Confidence 34444444555555555555555444444443
No 23
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=80.06 E-value=36 Score=31.14 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014127 249 IIQLEDKAKKLEGNIEMTRKE 269 (430)
Q Consensus 249 l~~lq~klk~lE~EIq~Lr~~ 269 (430)
+..++.++..+..|+..++..
T Consensus 92 ~~elq~ri~~L~~El~~~k~~ 112 (168)
T 3o0z_A 92 IGDLQARITSLQEEVKHLKHN 112 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555443
No 24
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=77.58 E-value=23 Score=30.38 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 014127 244 FIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLD 320 (430)
Q Consensus 244 ~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~ 320 (430)
..++-|...+..+..+..+|.+++..++. ..-|+.+..---+-...--+.=|.+.+||..|..||+.|++...
T Consensus 35 ~AEeaL~~Kq~~idelk~ei~q~~~~lE~----I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 35 QAEEALVAKQELIDKLKEEAEQHKIVMET----VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444322 12333333333333333345568889999999999999887543
No 25
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=76.22 E-value=31 Score=28.32 Aligned_cols=69 Identities=22% Similarity=0.261 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 014127 247 DKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 315 (430)
Q Consensus 247 ~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERl 315 (430)
.++..++......+.+|..|.+.+...-..-..++.+|......|=..-.......++.++|..++.-+
T Consensus 30 ~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 30 ADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555544321112224556667777777777777777777888888777544
No 26
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=73.03 E-value=39 Score=34.65 Aligned_cols=47 Identities=17% Similarity=0.041 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccc
Q 014127 172 DLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQT 218 (430)
Q Consensus 172 e~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~ 218 (430)
+++..|...|+.++.....+..+.+++.-+..+...|..-+++.-.+
T Consensus 24 ~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~ 70 (409)
T 1m1j_C 24 GIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPS 70 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 46788999999999999998888889988888888888888888544
No 27
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=72.56 E-value=21 Score=28.65 Aligned_cols=57 Identities=12% Similarity=0.176 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 014127 248 KIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEK 305 (430)
Q Consensus 248 el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk 305 (430)
++..+..+|..+|.+|..+..+|..|..-..+. .++..|+..|-..+..|+.+...=
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~-~~~~~l~~~l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPH-EQTQKVLADMAAAEQELEQAFERW 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677888888888999999998886311122 356677777777777777776543
No 28
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=72.19 E-value=1.1e+02 Score=32.67 Aligned_cols=113 Identities=15% Similarity=0.173 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhccccc-chhhHHHhhhhhhHHH
Q 014127 157 MEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTG-IYLKRLAASKGVEFER 235 (430)
Q Consensus 157 ~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~-~~a~q~~a~~~~EaE~ 235 (430)
.+.+.-...++...=..-.+|...++.++++..+...++.+...++..+..+.+.++..++.- ....|+.. ..|.|+
T Consensus 462 ~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~--kme~~~ 539 (592)
T 1f5n_A 462 QTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTE--KMENDR 539 (592)
T ss_dssp HHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 444444555555555555677778888888888888888888888888877777766654332 22244443 345555
Q ss_pred HHHHHHHH-HHHHHH--------HHHHHHHHHHHHHHHHHHHHhC
Q 014127 236 EILEAEYT-FIADKI--------IQLEDKAKKLEGNIEMTRKEIE 271 (430)
Q Consensus 236 e~l~qE~~-~l~~el--------~~lq~klk~lE~EIq~Lr~~ls 271 (430)
+.+.+|.. .+..++ ...+.+++.|.+||+.|+++..
T Consensus 540 ~~~~~e~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~~~ 584 (592)
T 1f5n_A 540 VQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMR 584 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444443 222222 2456678889999999988743
No 29
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=69.21 E-value=28 Score=29.87 Aligned_cols=102 Identities=16% Similarity=0.121 Sum_probs=54.7
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 014127 192 AELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 271 (430)
Q Consensus 192 aeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls 271 (430)
++...+|+.+......|+.+|.+....+..+ ...|....| ....++..|..++..-|+.+..|+...+
T Consensus 2 ~~t~~~~~~lq~~~~ql~~qL~k~~~~r~~L---e~~w~~k~E---------~~k~qV~~L~~~~q~sE~~L~~Lqq~fs 69 (112)
T 1x79_B 2 AETRDQVKKLQLMLRQANDQLEKTMKDKQEL---EDFIKQSSE---------DSSHQISALVLRAQASEILLEELQQGLS 69 (112)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888888888777764432222 122433333 2234555667777777777777777665
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 014127 272 DPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATL 308 (430)
Q Consensus 272 ~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL 308 (430)
+ ...+...+|..||..-=+=...|..|-.|+..|
T Consensus 70 q---~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L 103 (112)
T 1x79_B 70 Q---AKRDVQEQMAVLMQSREQVSEELVRLQKDNDSL 103 (112)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHTC-----------
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 4 344666677777776655555555555555443
No 30
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=68.55 E-value=71 Score=29.18 Aligned_cols=21 Identities=19% Similarity=0.506 Sum_probs=12.7
Q ss_pred HHhhHHHHH----HHHHHHHHHHHh
Q 014127 301 LSSEKATLA----FRIEAVSRLLDE 321 (430)
Q Consensus 301 LssEk~AL~----lqLERle~~~~e 321 (430)
|.-|++.+. |.|-.+++.|++
T Consensus 130 lEKe~a~~eid~~~eLKalQ~~~eq 154 (168)
T 3o0z_A 130 SEKEKNNLEIDLNYKLKSLQQRLEQ 154 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 445666666 666666665554
No 31
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=67.41 E-value=79 Score=33.75 Aligned_cols=16 Identities=6% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHH
Q 014127 300 ALSSEKATLAFRIEAV 315 (430)
Q Consensus 300 sLssEk~AL~lqLERl 315 (430)
.+..|...+++-||+-
T Consensus 230 kal~ei~Qm~mvLE~~ 245 (562)
T 3ghg_A 230 KALTDMPQMRMELERP 245 (562)
T ss_dssp ----------------
T ss_pred HHhhhhhcEEEEEEec
Confidence 4568888888999886
No 32
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=65.12 E-value=79 Score=28.45 Aligned_cols=100 Identities=10% Similarity=0.109 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHH
Q 014127 166 LETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFI 245 (430)
Q Consensus 166 LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l 245 (430)
|+.+......-+..++..+.++..+....+.....++.+.++|-.-|.. .+|.+++..+ .++...+.....|
T Consensus 49 l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFe------EAN~MVa~ar--~~~~~~e~r~~~L 120 (154)
T 2ocy_A 49 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD------EANNMVADAR--KEKYAIEILNKRL 120 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH------HHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH--HHHHHHHHHHHHH
Confidence 3444445555566666666666666666666666666666655554432 4577775443 3333444455567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 014127 246 ADKIIQLEDKAKKLEGNIEMTRKEIEDP 273 (430)
Q Consensus 246 ~~el~~lq~klk~lE~EIq~Lr~~ls~p 273 (430)
...+...+..+..++.++..|+.-|.+-
T Consensus 121 ~~ql~e~~~~l~~lq~ql~~LK~v~~~m 148 (154)
T 2ocy_A 121 TEQLREKDTLLDTLTLQLKNLKKVMHSL 148 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777888888888888888766553
No 33
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=65.10 E-value=63 Score=27.34 Aligned_cols=43 Identities=9% Similarity=0.097 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 014127 172 DLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 214 (430)
Q Consensus 172 e~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~ 214 (430)
-|.+-|..+++.++.-+..-+.|.-++.-+....++++.+.++
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~ 59 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE 59 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3556677777777766666666666666666666666655443
No 34
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=65.01 E-value=8.2 Score=40.90 Aligned_cols=60 Identities=20% Similarity=0.230 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 014127 156 RMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 215 (430)
Q Consensus 156 R~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~ 215 (430)
|++|.-...+|+.....+......++..|......+..|.++....+.+...|.++-..+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~ 389 (575)
T 2i1j_A 330 RERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNEL 389 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555666666666666667777777777776666555554333
No 35
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=64.84 E-value=48 Score=26.71 Aligned_cols=41 Identities=22% Similarity=0.275 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 014127 279 ELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLL 319 (430)
Q Consensus 279 ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~ 319 (430)
.|..-...|..+|...+...+.|...|+.|..+|..++..+
T Consensus 46 ~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 46 TLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444455555588888899999999999999988887544
No 36
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=64.59 E-value=57 Score=26.65 Aligned_cols=70 Identities=19% Similarity=0.313 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 014127 241 EYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLL 319 (430)
Q Consensus 241 E~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~ 319 (430)
-++.--++.+.|+.+.+.++.+|..++.. .|+....-++.-|..| +.+|+.+..|++.+..++..+....
T Consensus 17 RlAsyIdKVR~LEqqN~~Le~~i~~l~~~--~~~~~~~~ye~~i~~L-------r~~i~~~~~ek~~l~~e~dnl~~~~ 86 (93)
T 3s4r_A 17 RFANLIDKVRFLEQQNKILLAELEQLKGQ--GKSRLGDLYEEEMREL-------RRQVDQLTNDKARVEVERDNLAEDI 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCCcHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444466667777777777777766543 1222222334444433 5788999999999999988876533
No 37
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=64.25 E-value=64 Score=27.69 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=12.9
Q ss_pred hhhhHHH---HHHHHHHHHHHHHHHHHHHH
Q 014127 229 KGVEFER---EILEAEYTFIADKIIQLEDK 255 (430)
Q Consensus 229 ~~~EaE~---e~l~qE~~~l~~el~~lq~k 255 (430)
.+.++|+ +.+..|...|.+++..|+.+
T Consensus 76 ~DF~aERadREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 76 ADFQAERHAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence 4455553 44444444444444444443
No 38
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=63.69 E-value=20 Score=29.49 Aligned_cols=58 Identities=17% Similarity=0.306 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChh-----HHHHH---HHHHHHHHHHHHHHHHHHH
Q 014127 243 TFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEV-----EIELK---RRLGQLTDHLIQKQAQVEA 300 (430)
Q Consensus 243 ~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~-----e~ELE---~RL~~LTe~LIqKQtqLEs 300 (430)
..++.++..|+.+...++++|+.++.++.+|.+. ++.+= +-|+..+..|+.+=+.+..
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~rg 69 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEHEK 69 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 3566788889999999999999999999887642 33332 2233445566665554443
No 39
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=62.50 E-value=65 Score=26.55 Aligned_cols=35 Identities=29% Similarity=0.298 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 014127 281 KRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 315 (430)
Q Consensus 281 E~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERl 315 (430)
+.+|....+.|-..-.......++..+|..++.-+
T Consensus 64 ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 64 LEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666555666666777777766544
No 40
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=62.20 E-value=70 Score=26.84 Aligned_cols=66 Identities=9% Similarity=0.091 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhh
Q 014127 158 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASK 229 (430)
Q Consensus 158 qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~ 229 (430)
.+-.+...|+.++.....-+..++..+.++..+....+.....++.++++|-.-|.. .+|.+++..
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe------EAN~MVa~a 74 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD------EANNMVADA 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Confidence 455667778888888888888888888888887777777777777777766655443 356666543
No 41
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=61.19 E-value=65 Score=26.14 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014127 239 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 270 (430)
Q Consensus 239 ~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~l 270 (430)
..++..+..++..+..++..++.+++.++..+
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555554443
No 42
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=58.73 E-value=82 Score=27.40 Aligned_cols=37 Identities=32% Similarity=0.414 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 014127 277 EIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIE 313 (430)
Q Consensus 277 e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLE 313 (430)
-.+|+..|..|.+.|-.+=+.+|.|..++..+..++-
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 3466666666666666666677777766666655543
No 43
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=58.70 E-value=76 Score=26.13 Aligned_cols=6 Identities=17% Similarity=0.390 Sum_probs=2.1
Q ss_pred HHHHHh
Q 014127 206 EELSQR 211 (430)
Q Consensus 206 ~sLrqr 211 (430)
.+|+.+
T Consensus 47 ~sL~kk 52 (101)
T 3u1c_A 47 VQLEKQ 52 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 44
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=57.90 E-value=37 Score=27.51 Aligned_cols=59 Identities=29% Similarity=0.319 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHhHHHHHHHHHHHHHHhhhh
Q 014127 156 RMEALQLLAKLETANADLARALAAAQKKLEMETN-------QVAELRQQTELKEVAHEELSQRNSN 214 (430)
Q Consensus 156 R~qA~aREa~LE~enae~akALA~~Qr~lee~~~-------rvaeLeqkv~~lE~~~~sLrqrl~~ 214 (430)
+..+..|...+|.+|.++..-|..++..++.-.. ++..|-+.+.-+=.+..+|++.|.+
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5556678888888888888888888888887543 2333444444445555666666554
No 45
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=55.48 E-value=1.2e+02 Score=27.28 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 014127 158 EALQLLAKLETANADLARALAAAQKKLEMETNQVAEL 194 (430)
Q Consensus 158 qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeL 194 (430)
.+-.|+..++.+...+..-|-.+....++--+.|..|
T Consensus 67 kasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kL 103 (155)
T 2efr_A 67 KYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKL 103 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333333333333333333
No 46
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=55.04 E-value=1.4e+02 Score=30.69 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 014127 249 IIQLEDKAKKLEGNIEMTRKEI 270 (430)
Q Consensus 249 l~~lq~klk~lE~EIq~Lr~~l 270 (430)
|+.|+.-|..+-.+|++|...+
T Consensus 136 ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 136 INLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666655
No 47
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=54.99 E-value=49 Score=28.94 Aligned_cols=73 Identities=16% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 194 LRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRK 268 (430)
Q Consensus 194 Leqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~ 268 (430)
+-+.+-.+....+.|.+++.....+...++.-+...+.+.|. +++++..+.+++..|+.++.++|.++...++
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~--~~~e~~~l~~~~~~l~~~~~~le~~~~~~~~ 138 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAES--SAKEIKELKSEINKYQKNIVKLETELNDSKK 138 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 48
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=53.13 E-value=9.5 Score=36.96 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhCCC-C-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCC
Q 014127 256 AKKLEGNIEMTRKEIEDP-T-EVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKPV 325 (430)
Q Consensus 256 lk~lE~EIq~Lr~~ls~p-S-~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~e~~~~ 325 (430)
+..+++++..|+.++.+. . +...-.+.|++.|...+...+.+.+.|..+.+.++-+|++++...+..++.
T Consensus 26 ~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 26 LEQLRREAAVLREQLENAVGSHAPTRSARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhhhcccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 334556666777766321 0 212222889999999999999999999999999999999999877766554
No 49
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=52.77 E-value=90 Score=25.21 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Q 014127 171 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEEL 208 (430)
Q Consensus 171 ae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sL 208 (430)
.+....+...+..+..=..+...++......+...++|
T Consensus 9 Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL 46 (117)
T 2zqm_A 9 QAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEI 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666665566666665555555555544
No 50
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=52.37 E-value=79 Score=25.53 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 014127 161 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 215 (430)
Q Consensus 161 aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~ 215 (430)
.|...||........++..++..++.=..+++.|+-+++........++++..+.
T Consensus 6 ~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~ 60 (83)
T 2xdj_A 6 DRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3556666555556678888999999888999999999998888888887764444
No 51
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=50.22 E-value=1.4e+02 Score=26.72 Aligned_cols=9 Identities=22% Similarity=0.353 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 014127 279 ELKRRLGQL 287 (430)
Q Consensus 279 ELE~RL~~L 287 (430)
+|+.-|..|
T Consensus 127 eLd~tl~el 135 (155)
T 2efr_A 127 EMKQLEDKV 135 (155)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 52
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=47.72 E-value=1e+02 Score=24.45 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHhHHHHHHHHHHHHHHhhhh
Q 014127 158 EALQLLAKLETANADLARALAAAQKKLEMETN-------QVAELRQQTELKEVAHEELSQRNSN 214 (430)
Q Consensus 158 qA~aREa~LE~enae~akALA~~Qr~lee~~~-------rvaeLeqkv~~lE~~~~sLrqrl~~ 214 (430)
.+..|...+|.+|.++..-|..++..++.-.. ++..|-+.+.-+=.+..+|++.|.+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45677888888888888888888888887543 2333444444444555666666554
No 53
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=47.48 E-value=17 Score=32.26 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 014127 276 VEIELKRRLGQLTDHLIQKQAQVEALSSEKAT 307 (430)
Q Consensus 276 ~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~A 307 (430)
....++.|...|-.+|-.|.+-|+++....+.
T Consensus 97 ~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~ 128 (135)
T 2e7s_A 97 EKYAIEILNKRLTEQLREKDMLLDTLTLQLKN 128 (135)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888889999998888888876444333
No 54
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=47.10 E-value=37 Score=28.59 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=16.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhc
Q 014127 190 QVAELRQQTELKEVAHEELSQRNSNT 215 (430)
Q Consensus 190 rvaeLeqkv~~lE~~~~sLrqrl~~~ 215 (430)
.+..|..+++.++.+.+.|++++...
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~L 38 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRML 38 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777776665544
No 55
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.69 E-value=58 Score=28.79 Aligned_cols=48 Identities=10% Similarity=0.126 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhh
Q 014127 176 ALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASK 229 (430)
Q Consensus 176 ALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~ 229 (430)
-+..++..+.++..+....+.....++.+.++|-.-|.+ .+|.+++..
T Consensus 47 e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFe------EAN~MVa~a 94 (135)
T 2e7s_A 47 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD------EANNLVADA 94 (135)
T ss_dssp HHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHH------HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Confidence 344455555555555555555555555555555444332 356666544
No 56
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=45.81 E-value=1.4e+02 Score=25.50 Aligned_cols=60 Identities=15% Similarity=0.188 Sum_probs=25.9
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 014127 105 MVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLA 164 (430)
Q Consensus 105 ~~arl~~ek~~l~k~l~e~~~~q~~ea~el~~~m~e~~~A~elE~~aH~aTR~qA~aREa 164 (430)
-++++.+++..|+..+.+..+.=..+.++|+.....+-.-+..=.++-+-++.+++.+.+
T Consensus 21 qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~ 80 (112)
T 1x79_B 21 QLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMA 80 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444444444444444444443333333333333333333333333
No 57
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=41.89 E-value=54 Score=24.38 Aligned_cols=26 Identities=4% Similarity=0.173 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Q 014127 247 DKIIQLEDKAKKLEGNIEMTRKEIED 272 (430)
Q Consensus 247 ~el~~lq~klk~lE~EIq~Lr~~ls~ 272 (430)
.++..|+.++..+.++++.|+..+.+
T Consensus 26 ~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 26 LELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444555555555555555443
No 58
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=41.19 E-value=1.7e+02 Score=27.75 Aligned_cols=34 Identities=9% Similarity=0.121 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 014127 239 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 272 (430)
Q Consensus 239 ~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~ 272 (430)
+..+...+.++..++.++..++.++..++.++..
T Consensus 121 ~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~ 154 (369)
T 4dk0_A 121 KATLNNAKAEMDVVQENIKQAEIEVNTAETNLGY 154 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4445556667777777788888888888877755
No 59
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=40.97 E-value=1.5e+02 Score=24.29 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 277 EIELKRRLGQLTDHLIQKQAQVEAL 301 (430)
Q Consensus 277 e~ELE~RL~~LTe~LIqKQtqLEsL 301 (430)
..+++..+.+|=.++-.=|.+|+.|
T Consensus 69 l~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 69 QLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555555544
No 60
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=40.14 E-value=1.7e+02 Score=25.05 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 014127 249 IIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRL 318 (430)
Q Consensus 249 l~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~ 318 (430)
|..|+..+..+..+++.+...... ....|+.|+.+|--.|.....+......|+.-|+.+++.+...
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~q~---~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTESQR---VVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 61
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=38.81 E-value=1.5e+02 Score=28.04 Aligned_cols=81 Identities=9% Similarity=0.044 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 014127 235 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEA 314 (430)
Q Consensus 235 ~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLER 314 (430)
....+.++..++.++...+..+...+.+.++++.-......+..+++.. -..|..-+.+++.+......++.+|+.
T Consensus 72 l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a----~~~~~~a~a~~~~~~~~l~~~~~~l~~ 147 (369)
T 4dk0_A 72 LNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTA----KATLNNAKAEMDVVQENIKQAEIEVNT 147 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666677777777777777766655543334444433 233444566667777777777777777
Q ss_pred HHHHH
Q 014127 315 VSRLL 319 (430)
Q Consensus 315 le~~~ 319 (430)
++..+
T Consensus 148 a~~~l 152 (369)
T 4dk0_A 148 AETNL 152 (369)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 66544
No 62
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=38.19 E-value=1.5e+02 Score=24.67 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 014127 165 KLETANADLARALAAAQKKLEME 187 (430)
Q Consensus 165 ~LE~enae~akALA~~Qr~lee~ 187 (430)
.|.+.......||+..|..+++=
T Consensus 6 ~L~~~L~~aEeaL~~kq~~id~l 28 (94)
T 3jsv_C 6 DLRQQLQQAEEALVAKQELIDKL 28 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 45555566666666666555543
No 63
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=37.36 E-value=1.4e+02 Score=24.25 Aligned_cols=62 Identities=19% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Q 014127 242 YTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIE-------LKRRLGQLTDHLIQKQAQVEALSS 303 (430)
Q Consensus 242 ~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~E-------LE~RL~~LTe~LIqKQtqLEsLss 303 (430)
+..|++++..+=+.|..+.-+|+.|+..-..-+....+ |+....+|-+-...+|..|.+|..
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 64
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=37.03 E-value=1.6e+02 Score=23.42 Aligned_cols=93 Identities=13% Similarity=0.084 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccc--cch-hhHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 014127 174 ARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQT--GIY-LKRLAASKGVEFEREILEAEYTFIADKII 250 (430)
Q Consensus 174 akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~--~~~-a~q~~a~~~~EaE~e~l~qE~~~l~~el~ 250 (430)
.+.+.+.|..+..-..+...++.+....+....+|.. +... -.. ...+.-....+--...+.....++...+.
T Consensus 7 i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~----l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~ 82 (107)
T 1fxk_A 7 LAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSR----AADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREK 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----SCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666665556666666666555555554432 2110 000 00100011111111223334445556666
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 014127 251 QLEDKAKKLEGNIEMTRKEI 270 (430)
Q Consensus 251 ~lq~klk~lE~EIq~Lr~~l 270 (430)
.++.++..++.++..++..+
T Consensus 83 ~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 83 TIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665544
No 65
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=37.02 E-value=1.6e+02 Score=23.42 Aligned_cols=54 Identities=20% Similarity=0.259 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 014127 245 IADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQV 298 (430)
Q Consensus 245 l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqL 298 (430)
+.++|..++.+...++..|+.+..++.+......-+..-|..+.+.|=-|=..|
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL 58 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFEL 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345555566666667777777766665543344455555556665555554333
No 66
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=36.71 E-value=1e+02 Score=24.84 Aligned_cols=43 Identities=23% Similarity=0.203 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 014127 279 ELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDE 321 (430)
Q Consensus 279 ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~e 321 (430)
.||..+......+++=|.+|+.|..|...|+=++|.+.+....
T Consensus 10 ~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~q 52 (83)
T 2xdj_A 10 QLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQ 52 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444455555678888999999999999999999988765554
No 67
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=36.68 E-value=2e+02 Score=24.44 Aligned_cols=12 Identities=33% Similarity=0.457 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHh
Q 014127 259 LEGNIEMTRKEI 270 (430)
Q Consensus 259 lE~EIq~Lr~~l 270 (430)
++.||...|+-+
T Consensus 117 Ld~EIatYRkLL 128 (131)
T 3tnu_A 117 LEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhH
Confidence 556666555544
No 68
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=36.37 E-value=56 Score=34.53 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 014127 163 LAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 214 (430)
Q Consensus 163 Ea~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~ 214 (430)
...|+.+..++..-++++....+.+..++..|++++......+..-+.+|.+
T Consensus 407 ~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~~ 458 (575)
T 2i1j_A 407 RQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLA 458 (575)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666666666666666666666766666655555555555544
No 69
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=36.24 E-value=2e+02 Score=24.32 Aligned_cols=13 Identities=31% Similarity=0.342 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHh
Q 014127 258 KLEGNIEMTRKEI 270 (430)
Q Consensus 258 ~lE~EIq~Lr~~l 270 (430)
.++.||...|+-+
T Consensus 114 ~Ld~EIatYRkLL 126 (129)
T 3tnu_B 114 ALDVEIATYRKLL 126 (129)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhH
Confidence 3556666655543
No 70
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=35.89 E-value=98 Score=27.89 Aligned_cols=40 Identities=10% Similarity=0.158 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 014127 279 ELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRL 318 (430)
Q Consensus 279 ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~ 318 (430)
.|+.+|..|.+-|-.|...++.|..|..+|.+++.-++..
T Consensus 79 ~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~k 118 (152)
T 3a7p_A 79 SKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQK 118 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777777777777777665543
No 71
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=35.01 E-value=1.1e+02 Score=28.79 Aligned_cols=79 Identities=13% Similarity=0.104 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 014127 235 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEA 314 (430)
Q Consensus 235 ~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLER 314 (430)
...++.++..++.++...+..+...+.+.++.+.-......+..+++.. -..+...+.+++.+......++.+|+.
T Consensus 71 ~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a----~~~~~~~~a~l~~~~a~l~~a~a~l~~ 146 (341)
T 3fpp_A 71 IKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNA----ATEMAVKQAQIGTIDAQIKRNQASLDT 146 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHHH----HHHHHHTHHHHHHHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666677777777777777777766555543334455543 233445566666666665555555555
Q ss_pred HHH
Q 014127 315 VSR 317 (430)
Q Consensus 315 le~ 317 (430)
++.
T Consensus 147 a~~ 149 (341)
T 3fpp_A 147 AKT 149 (341)
T ss_dssp TTT
T ss_pred HHH
Confidence 443
No 72
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=34.93 E-value=78 Score=24.10 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 014127 238 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 271 (430)
Q Consensus 238 l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls 271 (430)
.++.+..|+.++..|+.+...|..+|..|+.++.
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556666666666666667777777766553
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.75 E-value=3.6e+02 Score=26.71 Aligned_cols=15 Identities=13% Similarity=0.313 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 014127 285 GQLTDHLIQKQAQVE 299 (430)
Q Consensus 285 ~~LTe~LIqKQtqLE 299 (430)
..|-|.-.+||.-.+
T Consensus 470 ~~~~~~~~~~~~~~~ 484 (487)
T 3oja_A 470 ATLQELVVREQNLAS 484 (487)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 334444445554433
No 74
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=33.28 E-value=43 Score=24.85 Aligned_cols=25 Identities=44% Similarity=0.574 Sum_probs=20.8
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHHH
Q 014127 102 RENMVARLEGEKQSLEKILEERAKQ 126 (430)
Q Consensus 102 re~~~arl~~ek~~l~k~l~e~~~~ 126 (430)
=|++|||||...+.|||-++--+|-
T Consensus 22 lenivarlendnanlekdianlekd 46 (56)
T 3he4_A 22 LENIVARLENDNANLEKDIANLEKD 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHH
Confidence 4899999999999999987766553
No 75
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=31.94 E-value=1.9e+02 Score=23.06 Aligned_cols=48 Identities=21% Similarity=0.218 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCC
Q 014127 277 EIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKP 324 (430)
Q Consensus 277 e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~~~e~~~ 324 (430)
--+|+.-|..-.+.|-+|+..|+.+..+...+.-.+..|+..++..++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 446777777777778888888888888888888888888777766654
No 76
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=31.45 E-value=1.2e+02 Score=21.90 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=10.5
Q ss_pred HHHHhhhhcccccchhhHH
Q 014127 207 ELSQRNSNTHQTGIYLKRL 225 (430)
Q Consensus 207 sLrqrl~~~~q~~~~a~q~ 225 (430)
.|+.+++....+++++.++
T Consensus 4 alkselqalkkegfspeel 22 (48)
T 1g6u_A 4 ALKSELQALKKEGFSPEEL 22 (48)
T ss_dssp HHHHHHHHHHHTTCSHHHH
T ss_pred HHHHHHHHHHHcCCCHHHH
Confidence 4455555555566655544
No 77
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=31.43 E-value=2.4e+02 Score=23.97 Aligned_cols=87 Identities=24% Similarity=0.282 Sum_probs=54.3
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-------H
Q 014127 105 MVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARA-------L 177 (430)
Q Consensus 105 ~~arl~~ek~~l~k~l~e~~~~q~~ea~el~~~m~e~~~A~elE~~aH~aTR~qA~aREa~LE~enae~akA-------L 177 (430)
-++||..|.+++-.=+.. .+..-.-++..+..|...=..++.....+.-+||..|-+|+++ |
T Consensus 11 ~~~~L~~E~e~~k~K~~~-----------~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SL 79 (111)
T 2v66_B 11 DNQRLKYEVEALKEKLEH-----------QYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSL 79 (111)
T ss_dssp HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhH
Confidence 356666666665433322 1222222333445555566677888889999999999999876 5
Q ss_pred HHHHHHHHHhHHHHHHHHhHHHHHH
Q 014127 178 AAAQKKLEMETNQVAELRQQTELKE 202 (430)
Q Consensus 178 A~~Qr~lee~~~rvaeLeqkv~~lE 202 (430)
.++..++....-+.+.|+.++..++
T Consensus 80 eD~E~k~n~aiErnalLE~El~EKe 104 (111)
T 2v66_B 80 EDFEQRLNQAIERNAFLESELDEKE 104 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666656666677777666444
No 78
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=30.83 E-value=1.4e+02 Score=22.61 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 239 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKE 269 (430)
Q Consensus 239 ~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ 269 (430)
.++...|+.+-..|+.++..++.||+.|+.-
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666666666666666543
No 79
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=30.73 E-value=1.3e+02 Score=30.51 Aligned_cols=75 Identities=13% Similarity=0.172 Sum_probs=43.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 188 TNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTR 267 (430)
Q Consensus 188 ~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr 267 (430)
.+++-.|.++...+..+.+.|+.+.-...+. +.. ....+.+-+.++...+.+++..++.++..+++++..+=
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~-------i~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKR-------VPK-APPEEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------SSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHh-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666655553333222 111 11112334566777777888888888888888777655
Q ss_pred HHh
Q 014127 268 KEI 270 (430)
Q Consensus 268 ~~l 270 (430)
..+
T Consensus 99 ~~i 101 (421)
T 1ses_A 99 LQV 101 (421)
T ss_dssp TTC
T ss_pred HhC
Confidence 544
No 80
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=30.58 E-value=2.2e+02 Score=23.27 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=24.0
Q ss_pred HHHHHHHhHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014127 101 ERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMME 140 (430)
Q Consensus 101 ere~~~arl~~ek~~l~k~l~e~~~~q~~ea~el~~~m~e 140 (430)
-|+|-+.-|++.+.+|+.-|.+-+..-..+...+|..+..
T Consensus 9 ~~~~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~ 48 (95)
T 3mov_A 9 SRENLYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTD 48 (95)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999988888777666666665433
No 81
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=30.57 E-value=1.4e+02 Score=23.69 Aligned_cols=40 Identities=20% Similarity=0.018 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Q 014127 159 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQT 198 (430)
Q Consensus 159 A~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv 198 (430)
...|..+||...+=....|-.+..-+-.+...++.|..++
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql 51 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELI 51 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666665555555555544444444444443333
No 82
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=30.03 E-value=1.1e+02 Score=22.04 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014127 242 YTFIADKIIQLEDKAKKLEGNIEMTRKEI 270 (430)
Q Consensus 242 ~~~l~~el~~lq~klk~lE~EIq~Lr~~l 270 (430)
...++.....|+.+++-++.|.++||+-+
T Consensus 12 ~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 12 VKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 33555677788888999999999998755
No 83
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=30.01 E-value=4e+02 Score=27.33 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 014127 172 DLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 215 (430)
Q Consensus 172 e~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~ 215 (430)
+++..|..-|+.++.....+...-+++.-.......+-.-|.+.
T Consensus 24 gl~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~ 67 (411)
T 3ghg_C 24 GIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLT 67 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 35667777777777766666666566655555555555555554
No 84
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=29.68 E-value=2e+02 Score=25.28 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014127 277 EIELKRRLGQLTDHLIQ 293 (430)
Q Consensus 277 e~ELE~RL~~LTe~LIq 293 (430)
..+|+..|+.++..|-.
T Consensus 103 ~~eLEeeL~~~~~nlKs 119 (147)
T 2b9c_A 103 CAELEEELKTVTNNLKS 119 (147)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34666666666666654
No 85
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=29.29 E-value=5.3e+02 Score=27.21 Aligned_cols=14 Identities=21% Similarity=0.430 Sum_probs=9.6
Q ss_pred ccchhhhhhhhhcC
Q 014127 415 SGAVFSLENINNTA 428 (430)
Q Consensus 415 sga~~s~e~~~~~~ 428 (430)
.+|.+|+-+||..+
T Consensus 304 ~~AllS~sSLN~~~ 317 (497)
T 3iox_A 304 DNALLSVASLNREH 317 (497)
T ss_dssp EEEEEEECCCCBCS
T ss_pred ccceeeeeeccCCC
Confidence 45677777777654
No 86
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=29.14 E-value=1.1e+02 Score=20.52 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014127 238 LEAEYTFIADKIIQLEDK 255 (430)
Q Consensus 238 l~qE~~~l~~el~~lq~k 255 (430)
++||++.+..++..++-+
T Consensus 7 lkqeiaalkkeiaalkfe 24 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFE 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 87
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=28.95 E-value=1.1e+02 Score=22.69 Aligned_cols=29 Identities=10% Similarity=0.066 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 241 EYTFIADKIIQLEDKAKKLEGNIEMTRKE 269 (430)
Q Consensus 241 E~~~l~~el~~lq~klk~lE~EIq~Lr~~ 269 (430)
++..++.+-..|+.++..+..++..|+..
T Consensus 30 ~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 30 KAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555443
No 88
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=28.55 E-value=1.9e+02 Score=24.18 Aligned_cols=77 Identities=18% Similarity=0.164 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 014127 242 YTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPT---EVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRL 318 (430)
Q Consensus 242 ~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS---~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk~AL~lqLERle~~ 318 (430)
+..|+..|...+..+.++...|..|+..+...- ....-|+.+..---+-...--+.=|.+..||..|..+|+.+.+.
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 445666666666667667777777766543321 11223333333333333333345566666666666666666653
No 89
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=28.36 E-value=2.3e+02 Score=22.68 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014127 250 IQLEDKAKKLEGNIEMTRK 268 (430)
Q Consensus 250 ~~lq~klk~lE~EIq~Lr~ 268 (430)
..|+.++..+..||.-|++
T Consensus 66 ~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 66 LDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4566666677777766543
No 90
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=27.62 E-value=1.8e+02 Score=21.50 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 014127 158 EALQLLAKLETANADLARALAAAQKKLEMETNQ 190 (430)
Q Consensus 158 qA~aREa~LE~enae~akALA~~Qr~lee~~~r 190 (430)
+...+...|-..|..++.+|..+...|..=..+
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkee 45 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREE 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777777788877776665543333
No 91
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=27.59 E-value=3.3e+02 Score=24.45 Aligned_cols=13 Identities=38% Similarity=0.460 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 014127 130 EASELQTSMMETM 142 (430)
Q Consensus 130 ea~el~~~m~e~~ 142 (430)
+-++=+|+.|+..
T Consensus 17 ~~~~~~~~~md~~ 29 (152)
T 3a7p_A 17 ERSNPQTDSMDDL 29 (152)
T ss_dssp -------------
T ss_pred hhcCCcchhHHHH
Confidence 4456677777766
No 92
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=27.47 E-value=2e+02 Score=29.94 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014127 236 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 270 (430)
Q Consensus 236 e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~l 270 (430)
+-+.++...+.++|..++.++..+++++..+=..+
T Consensus 119 ~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~i 153 (501)
T 1wle_A 119 QSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRL 153 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555666666666666666666666666554443
No 93
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=27.09 E-value=1.5e+02 Score=23.82 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHH
Q 014127 246 ADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQA 296 (430)
Q Consensus 246 ~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~RL~~LTe~LIqKQt 296 (430)
.++|..++.+...++..|+.|..++.+.-....-+..-|..+.+.|=-|=.
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~ 62 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLF 62 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 344555555555566666666666655333344444445555555544433
No 94
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.76 E-value=2.9e+02 Score=23.27 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHh
Q 014127 161 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 211 (430)
Q Consensus 161 aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqr 211 (430)
.....|...++.+.++|+..+...+.+ +..+..++..++.++..++..
T Consensus 50 ~el~~l~~~~~~LE~~l~e~e~~~~~~---l~~~q~~i~~lE~eL~~~r~e 97 (129)
T 3tnu_B 50 AEIDNVKKQCANLQNAIADAEQRGELA---LKDARNKLAELEEALQKAKQD 97 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHH
Confidence 333445555666666666555544332 233334444444444444444
No 95
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=26.30 E-value=14 Score=30.98 Aligned_cols=14 Identities=29% Similarity=0.624 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH
Q 014127 386 LWSLVYLVCLHLWV 399 (430)
Q Consensus 386 l~fi~Y~v~LHlwV 399 (430)
++|++.+++||+|.
T Consensus 78 l~Fi~~Vi~Lhi~~ 91 (96)
T 2wwb_C 78 LLFIASVFMLHIWG 91 (96)
T ss_dssp HHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhh
Confidence 47888888999874
No 96
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=25.97 E-value=22 Score=23.87 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=16.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhcccc
Q 014127 191 VAELRQQTELKEVAHEELSQRNSNTHQT 218 (430)
Q Consensus 191 vaeLeqkv~~lE~~~~sLrqrl~~~~q~ 218 (430)
++.|++++..+|..|..-.|++...+|+
T Consensus 2 iaaleqkiaaleqkcaaceqkiaaleqk 29 (32)
T 4g1a_A 2 IAALEQKIAALEQKCAACEQKIAALEQK 29 (32)
T ss_dssp CHHHHHHHHHHHHHTSSHHHHHHHHC--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3556677777776666665665555443
No 97
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=25.47 E-value=3.8e+02 Score=24.22 Aligned_cols=28 Identities=0% Similarity=0.116 Sum_probs=15.0
Q ss_pred HhCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 269 EIEDPTEVEIELKRRLGQLTDHLIQKQAQVEA 300 (430)
Q Consensus 269 ~ls~pS~~e~ELE~RL~~LTe~LIqKQtqLEs 300 (430)
.+..++++ +..++.|++.+...|+++..
T Consensus 104 L~~a~~~D----eakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 104 LLTASSPD----TAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHTSSSCC----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCC----HHHHHHHHHHHHHHHHHHHH
Confidence 34445544 33555666666666665544
No 98
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=24.42 E-value=23 Score=29.27 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 014127 386 LWSLVYLVCLHLWVIY 401 (430)
Q Consensus 386 l~fi~Y~v~LHlwV~~ 401 (430)
+.|++.+++||+|-=|
T Consensus 69 l~FIa~VilLHI~gK~ 84 (87)
T 2ww9_C 69 VGFIFSVIALHLLTKF 84 (87)
T ss_dssp HHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhhhh
Confidence 4788899999998543
No 99
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=24.19 E-value=4e+02 Score=24.08 Aligned_cols=43 Identities=9% Similarity=0.065 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 014127 241 EYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRR 283 (430)
Q Consensus 241 E~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~~e~ELE~R 283 (430)
++..++.++...+..+...+.+.++.+.-...-..+..+|+..
T Consensus 61 ~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a 103 (277)
T 2f1m_A 61 TYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQA 103 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHH
Confidence 3444455566666666666777777665554433345555543
No 100
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=23.98 E-value=5.3e+02 Score=25.40 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 014127 197 QTELKEVAHEELSQRNSNT 215 (430)
Q Consensus 197 kv~~lE~~~~sLrqrl~~~ 215 (430)
+++++|.+.-.|.++|+++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 101
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.95 E-value=2.7e+02 Score=22.09 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 014127 172 DLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 216 (430)
Q Consensus 172 e~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~ 216 (430)
+|-.+|-.--..|..+..++.+|+..+..++.....|+.++.+..
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455544555566667788888888888888888888887764
No 102
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=23.87 E-value=2.2e+02 Score=21.05 Aligned_cols=36 Identities=28% Similarity=0.220 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 014127 237 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 272 (430)
Q Consensus 237 ~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~ 272 (430)
.+++-+..+..++..|+..-..+|+||++|++-+.+
T Consensus 8 kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 8 RLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 456666777788888888888899999999886643
No 103
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=23.69 E-value=3.3e+02 Score=25.43 Aligned_cols=32 Identities=9% Similarity=0.276 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 014127 241 EYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 272 (430)
Q Consensus 241 E~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~ 272 (430)
++...+.++..++.++...+..+..++.++..
T Consensus 122 ~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~ 153 (341)
T 3fpp_A 122 EMAVKQAQIGTIDAQIKRNQASLDTAKTNLDY 153 (341)
T ss_dssp HHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 34444455556666666666666666555533
No 104
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=21.85 E-value=1.7e+02 Score=20.09 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 014127 244 FIADKIIQLEDKAKKLEGNIEMTRKEIE 271 (430)
Q Consensus 244 ~l~~el~~lq~klk~lE~EIq~Lr~~ls 271 (430)
.|+++...|=.+...+++||.+|+.-+.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 3556777777777888999999887654
No 105
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=21.85 E-value=1.6e+02 Score=30.19 Aligned_cols=71 Identities=11% Similarity=0.073 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhhhcccccchh-hHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 196 QQTELKEVAHEELSQRNSNTHQTGIYL-KRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMT 266 (430)
Q Consensus 196 qkv~~lE~~~~sLrqrl~~~~q~~~~a-~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~L 266 (430)
+++..+.....+++.+++.++.+.... +++-.......+.+-+.++...+.+++..++.++..+++++..+
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 106
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=21.45 E-value=3.3e+02 Score=22.06 Aligned_cols=70 Identities=23% Similarity=0.243 Sum_probs=35.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 189 NQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRK 268 (430)
Q Consensus 189 ~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~Lr~ 268 (430)
.+|..|+++...|+.....|+.+ + .+.+- .--+.+..-++..+..+..+-.+++-++..+..+++.++.
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~-------~--~~~~~--~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQ-------G--KSRLG--DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------H--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-------c--CCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666665555432 0 01111 1122333334444555555555666666666666666665
Q ss_pred H
Q 014127 269 E 269 (430)
Q Consensus 269 ~ 269 (430)
.
T Consensus 92 K 92 (93)
T 3s4r_A 92 K 92 (93)
T ss_dssp H
T ss_pred h
Confidence 3
No 107
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.08 E-value=3.8e+02 Score=22.62 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHh
Q 014127 164 AKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 211 (430)
Q Consensus 164 a~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqr 211 (430)
..|...++.+.++|+..+...+.+ +..+..++..+|.++..++..
T Consensus 55 ~~l~~~~~sLE~~l~e~e~~~~~~---l~~~q~~i~~lE~eL~~~r~e 99 (131)
T 3tnu_A 55 QSQLSMKASLENSLEETKGRYCMQ---LAQIQEMIGSVEEQLAQLRCE 99 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666555544332 223334444444444444444
No 108
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=20.91 E-value=1.8e+02 Score=20.03 Aligned_cols=27 Identities=22% Similarity=0.171 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014127 244 FIADKIIQLEDKAKKLEGNIEMTRKEI 270 (430)
Q Consensus 244 ~l~~el~~lq~klk~lE~EIq~Lr~~l 270 (430)
.|++++..+=.+...++.||.+|+.-+
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 456777778788888899999888755
No 109
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=20.75 E-value=3.4e+02 Score=22.04 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Q 014127 247 DKIIQLEDKAKKLEGNIEMTRKEIE 271 (430)
Q Consensus 247 ~el~~lq~klk~lE~EIq~Lr~~ls 271 (430)
++|..|+..+...+.+|..|..++.
T Consensus 54 ~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 54 AEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 4444455555555666666666554
No 110
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=20.63 E-value=3.4e+02 Score=21.90 Aligned_cols=33 Identities=24% Similarity=0.513 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 233 FEREILEAEYTFIADKIIQLEDKAKKLEGNIEM 265 (430)
Q Consensus 233 aE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~ 265 (430)
.|+++++.|+..+++-..+++.+++.+|+++.+
T Consensus 44 ~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 44 CEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677777777777777788888888877654
No 111
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=20.38 E-value=1.7e+02 Score=30.49 Aligned_cols=71 Identities=10% Similarity=0.032 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhhhcccccchh-hHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 196 QQTELKEVAHEELSQRNSNTHQTGIYL-KRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMT 266 (430)
Q Consensus 196 qkv~~lE~~~~sLrqrl~~~~q~~~~a-~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~EIq~L 266 (430)
+++..++....+++.+++.++.+.... +++-.......+.+-+.++...+.++|..++.++..+++++..+
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!