Query 014127
Match_columns 430
No_of_seqs 121 out of 137
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 05:57:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014127.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014127hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ivsa1 a.2.7.3 (A:797-862) Va 62.0 23 0.0017 25.0 8.6 29 246-274 3-31 (66)
2 d1seta1 a.2.7.1 (A:1-110) Sery 46.3 53 0.0038 24.9 8.8 80 183-270 22-101 (110)
3 d1fxka_ a.2.5.1 (A:) Prefoldin 43.2 63 0.0046 24.4 9.1 32 239-270 71-102 (107)
4 d1f5na1 a.114.1.1 (A:284-583) 27.8 1.6E+02 0.011 24.4 10.5 18 252-269 282-299 (300)
5 d2f23a1 a.2.1.1 (A:3-77) GreA 26.6 91 0.0066 22.8 6.7 50 242-291 10-67 (75)
6 d1grja1 a.2.1.1 (A:2-79) GreA 18.9 1.4E+02 0.01 21.9 6.4 16 276-291 53-68 (78)
7 d1s35a2 a.7.1.1 (A:1169-1273) 16.6 1.7E+02 0.013 20.6 8.7 72 142-213 32-103 (105)
8 d1hcia4 a.7.1.1 (A:633-746) al 14.7 2.1E+02 0.015 20.7 10.4 60 240-300 44-108 (114)
9 d1u5pa2 a.7.1.1 (A:1772-1872) 13.7 2E+02 0.014 19.9 8.9 60 239-299 37-101 (101)
10 d1seta1 a.2.7.1 (A:1-110) Sery 13.5 2.4E+02 0.018 20.8 9.8 22 299-320 74-95 (110)
No 1
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=61.95 E-value=23 Score=24.98 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 014127 246 ADKIIQLEDKAKKLEGNIEMTRKEIEDPT 274 (430)
Q Consensus 246 ~~el~~lq~klk~lE~EIq~Lr~~ls~pS 274 (430)
.+++.+|+.++..++.+|..+.+.|++|.
T Consensus 3 ~~E~~RL~K~l~kl~~~i~~~~~kL~N~~ 31 (66)
T d1ivsa1 3 EEWRRRQEKRLKELLALAERSQRKLASPG 31 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCChH
Confidence 45677899999999999999999999875
No 2
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=46.30 E-value=53 Score=24.87 Aligned_cols=80 Identities=14% Similarity=0.223 Sum_probs=45.0
Q ss_pred HHHHhHHHHHHHHhHHHHHHHHHHHHHHhhhhcccccchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 183 KLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGN 262 (430)
Q Consensus 183 ~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~~~~q~~~~a~q~~a~~~~EaE~e~l~qE~~~l~~el~~lq~klk~lE~E 262 (430)
..+....++-.|.++...+....++|+.+--.+.. ++-...+.+ .+-+.++...+.+++..++.+++.++.+
T Consensus 22 ~~~~~ld~i~~ld~~rr~l~~~~e~l~~~rN~~sk------~i~k~~~~~--~~~l~~~~k~lk~~i~~le~~~~~~~~~ 93 (110)
T d1seta1 22 GVALDLEALLALDREVQELKKRLQEVQTERNQVAK------RVPKAPPEE--KEALIARGKALGEEAKRLEEALREKEAR 93 (110)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HGGGCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666666666666655332221 111112222 2235566777778888888888888877
Q ss_pred HHHHHHHh
Q 014127 263 IEMTRKEI 270 (430)
Q Consensus 263 Iq~Lr~~l 270 (430)
+..+-..+
T Consensus 94 l~~~ll~i 101 (110)
T d1seta1 94 LEALLLQV 101 (110)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHcC
Confidence 77665444
No 3
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=43.22 E-value=63 Score=24.44 Aligned_cols=32 Identities=6% Similarity=0.155 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014127 239 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 270 (430)
Q Consensus 239 ~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~l 270 (430)
+..+.++...+.+++.++..++.++..++..+
T Consensus 71 ~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 71 QEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666665543
No 4
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.77 E-value=1.6e+02 Score=24.42 Aligned_cols=18 Identities=6% Similarity=0.309 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014127 252 LEDKAKKLEGNIEMTRKE 269 (430)
Q Consensus 252 lq~klk~lE~EIq~Lr~~ 269 (430)
++.+...++.+|+.|+..
T Consensus 282 ~~~~~~~l~~ei~~Lk~~ 299 (300)
T d1f5na1 282 FQKESRIMKNEIQDLQTK 299 (300)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 334445555555555543
No 5
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=26.60 E-value=91 Score=22.79 Aligned_cols=50 Identities=12% Similarity=0.232 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCC------hhHHHHHHHHHHHHHHH
Q 014127 242 YTFIADKIIQLEDKAKKLEGNIEMTRK--EIEDPT------EVEIELKRRLGQLTDHL 291 (430)
Q Consensus 242 ~~~l~~el~~lq~klk~lE~EIq~Lr~--~ls~pS------~~e~ELE~RL~~LTe~L 291 (430)
|..|+++|..++.+....-..|+..+. +++.-. .....++.||..|.+.|
T Consensus 10 ~~kL~~EL~~l~~~r~ei~~~I~eAr~~GDl~ENaeY~aAke~q~~~e~rI~eLe~~L 67 (75)
T d2f23a1 10 YERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDIL 67 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556665554444444455554443 233322 14778889999988876
No 6
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=18.85 E-value=1.4e+02 Score=21.89 Aligned_cols=16 Identities=13% Similarity=0.102 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHH
Q 014127 276 VEIELKRRLGQLTDHL 291 (430)
Q Consensus 276 ~e~ELE~RL~~LTe~L 291 (430)
.+..++.||..|.+.|
T Consensus 53 ~q~~~e~RI~eLe~~L 68 (78)
T d1grja1 53 QQGFCEGRIKDIEAKL 68 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3677788888888776
No 7
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.60 E-value=1.7e+02 Score=20.62 Aligned_cols=72 Identities=10% Similarity=-0.010 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 014127 142 MDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNS 213 (430)
Q Consensus 142 ~~A~elE~~aH~aTR~qA~aREa~LE~enae~akALA~~Qr~lee~~~rvaeLeqkv~~lE~~~~sLrqrl~ 213 (430)
+..++.-.++|..-..+...+...+..=+.....-+...--..+.-..++..|.+++..+...+..-+.+|.
T Consensus 32 l~~v~~l~k~h~~l~~~l~~~~~~v~~l~~~a~~L~~~~~~~~~~I~~~~~~l~~rw~~l~~~~~~r~~~L~ 103 (105)
T d1s35a2 32 LEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDRHRKNNEKAQEASVLLR 103 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344666666777766666666665544333322222221112222234566666677666666666666554
No 8
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.66 E-value=2.1e+02 Score=20.68 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 240 AEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPT-----EVEIELKRRLGQLTDHLIQKQAQVEA 300 (430)
Q Consensus 240 qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS-----~~e~ELE~RL~~LTe~LIqKQtqLEs 300 (430)
..+..++.+|...+.++..+.+.=+.|...- +|. ....+|..+...|-+.+..+++.||.
T Consensus 44 ~~h~~~e~el~~~~~~i~~l~~~g~~L~~~~-~~~~~~i~~~~~~L~~~W~~L~~~~~~R~~~Le~ 108 (114)
T d1hcia4 44 NQLKQYEHNIINYKNNIDKLEGDHQLIQEAL-VFDNKHTNYTMEHIRVGWELLLTTIARTINEVET 108 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCTTCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566667667777766666656565432 221 24789999999999999999999986
No 9
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=13.67 E-value=2e+02 Score=19.90 Aligned_cols=60 Identities=5% Similarity=0.016 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCh-----hHHHHHHHHHHHHHHHHHHHHHHH
Q 014127 239 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTE-----VEIELKRRLGQLTDHLIQKQAQVE 299 (430)
Q Consensus 239 ~qE~~~l~~el~~lq~klk~lE~EIq~Lr~~ls~pS~-----~e~ELE~RL~~LTe~LIqKQtqLE 299 (430)
...+..++.+|...+.++..+...-+.|-.. .+|.. --.+|..+...|.+.+..+...||
T Consensus 37 l~~h~~~~~~i~~~~~~~~~l~~~~~~l~~~-~~~~~~~I~~~~~~l~~~w~~L~~~~~~R~~~Le 101 (101)
T d1u5pa2 37 RKKHKRLEAELAAHEPAIQGVLDTGKKLSDD-NTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLE 101 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3445556667777777777777666666432 23332 255677777777777777766653
No 10
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=13.47 E-value=2.4e+02 Score=20.80 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=10.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHH
Q 014127 299 EALSSEKATLAFRIEAVSRLLD 320 (430)
Q Consensus 299 EsLssEk~AL~lqLERle~~~~ 320 (430)
..|..+...+.-++..++..+.
T Consensus 74 k~lk~~i~~le~~~~~~~~~l~ 95 (110)
T d1seta1 74 KALGEEAKRLEEALREKEARLE 95 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544443
Done!