BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014128
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SPW|A Chain A, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
pdb|3SPW|B Chain B, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
Length = 436
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 131/318 (41%), Gaps = 45/318 (14%)
Query: 90 ECEDPYM-RLVYASSWALSI----YFAYRRAW----KPFNPVLGETF-------EMVNHG 133
E E P + R++ + W +S Y + + KP NP LGE F E G
Sbjct: 75 EVESPELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFG 134
Query: 134 GVTFIAEQVSHHPPMSAGHAENEHFIYDVT--SKLRTKFLGN-SIDVYPVGRTRVTLKRD 190
++EQVSHHPP++A N+ + ++++ F + + V G T + +K +
Sbjct: 135 ETVLLSEQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASFTKSLMLTVKQFGHTMLDIKDE 194
Query: 191 GVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFQPCGWFGAGRYEVDGY 250
+ + PPP + ++ +++ G + + +TG V+ F G+F +
Sbjct: 195 SYL--VTPPPLHIEGILVASPFVELEGKSYIQS-STGLLCVIEFSGRGYFSGKKNSFKAR 251
Query: 251 VY----DAAEQPKILMT--GKWNESMSYQPCDSEGEPLPGTELKEVWRVADAPEDDKYQY 304
+Y D+ ++ K L T G+W+ S + + E + + A P +
Sbjct: 252 IYKDSKDSKDKEKALYTISGQWSGSSKIIKANKKEES------RLFYDAARIPAEH---- 301
Query: 305 TYFTHKLNSFDTAPKKLLPSDSRLRPDRYALEKGDLSKAGSEKSRLEERQRAEKRIREAK 364
LN + L S A++ GD + K+ LEE QR ++ EAK
Sbjct: 302 ------LNVKPLEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAK 355
Query: 365 DDMFTPKWF-DLSDEVTP 381
+ +WF D VTP
Sbjct: 356 GISWQRRWFKDFDYSVTP 373
>pdb|1ZHT|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 7-Hydroxycholesterol
pdb|1ZHW|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 20-hydroxycholesterol
pdb|1ZHX|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 25-Hydroxycholesterol
pdb|1ZHY|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Cholesterol
pdb|1ZHZ|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Ergosterol
Length = 438
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 117/282 (41%), Gaps = 36/282 (12%)
Query: 117 KPFNPVLGETF-------EMVNHGGVTFIAEQVSHHPPMSAGHAENEHFIYDVT--SKLR 167
KP NP LGE F E G ++EQVSHHPP++A N+ + ++++
Sbjct: 113 KPLNPFLGELFVGKWENKEHPEFGETVLLSEQVSHHPPVTAFSIFNDKNKVKLQGYNQIK 172
Query: 168 TKFLGN-SIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTT 226
F + + V G T + +K + + + PPP + ++ +++ G + + +T
Sbjct: 173 ASFTKSLMLTVKQFGHTMLDIKDESYL--VTPPPLHIEGILVASPFVELEGKSYIQS-ST 229
Query: 227 GDKVVLYFQPCGWFGAGRYEVDGYVY----DAAEQPKILMT--GKWNESMSYQPCDSEGE 280
G V+ F G+F + +Y D+ ++ K L T G+W+ S + + E
Sbjct: 230 GLLCVIEFSGRGYFSGKKNSFKARIYKDSKDSKDKEKALYTISGQWSGSSKIIKANKKEE 289
Query: 281 PLPGTELKEVWRVADAPEDDKYQYTYFTHKLNSFDTAPKKLLPSDSRLRPDRYALEKGDL 340
+ + A P + LN + L S A++ GD
Sbjct: 290 S------RLFYDAARIPAEH----------LNVKPLEEQHPLESRKAWYDVAGAIKLGDF 333
Query: 341 SKAGSEKSRLEERQRAEKRIREAKDDMFTPKWF-DLSDEVTP 381
+ K+ LEE QR ++ EAK + +WF D VTP
Sbjct: 334 NLIAKTKTELEETQRELRKEEEAKGISWQRRWFKDFDYSVTP 375
>pdb|1ZI7|A Chain A, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
pdb|1ZI7|B Chain B, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
pdb|1ZI7|C Chain C, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
Length = 406
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 129/315 (40%), Gaps = 42/315 (13%)
Query: 90 ECEDPYM-RLVYASSWALSI----YFAYRRAW----KPFNPVLGETF-------EMVNHG 133
E E P + R++ + W +S Y + + KP NP LGE F E G
Sbjct: 48 EVESPELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFG 107
Query: 134 GVTFIAEQVSHHPPMSAGHAENEHFIYDVT--SKLRTKFLGN-SIDVYPVGRTRVTLKRD 190
++EQVSHHPP++A N+ + ++++ F + + V G T + +K +
Sbjct: 108 ETVLLSEQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASFTKSLMLTVKQFGHTMLDIKDE 167
Query: 191 GVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFQPC-GWFGAGRYEVDG 249
+ + PPP + ++ +++ G + + +TG V+ F G + + +
Sbjct: 168 SYL--VTPPPLHIEGILVASPFVELEGKSYIQS-STGLLCVIEFSGVDGKKNSFKARIYK 224
Query: 250 YVYDAAEQPKILMT--GKWNESMSYQPCDSEGEPLPGTELKEVWRVADAPEDDKYQYTYF 307
D+ ++ K L T G+W+ S + + E + + A P +
Sbjct: 225 DSKDSKDKEKALYTISGQWSGSSKIIKANKKEES------RLFYDAARIPAEH------- 271
Query: 308 THKLNSFDTAPKKLLPSDSRLRPDRYALEKGDLSKAGSEKSRLEERQRAEKRIREAKDDM 367
LN + L S A++ GD + K+ LEE QR ++ EAK
Sbjct: 272 ---LNVKPLEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGIS 328
Query: 368 FTPKWF-DLSDEVTP 381
+ +WF D VTP
Sbjct: 329 WQRRWFKDFDYSVTP 343
>pdb|3KG6|A Chain A, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
pdb|3KG6|B Chain B, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
pdb|3KG6|C Chain C, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
pdb|3KG6|D Chain D, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
Length = 285
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 240 FGAGRYEVDGYVYDAAEQPKILMTGKWNESMSYQPCDS-EGEPLPGTELKEVWRVADAPE 298
FG + GY+ AA K L T + E + D + +P TE+K V V E
Sbjct: 40 FGKVLFPSTGYLEIAASAGKSLFTSQ--EQVVVSDVDILQSLVIPETEIKTVQTVVSFAE 97
Query: 299 DDKYQYTYFTHKLNSFDTAPKKLLPSDSRL--RPDRYALEKGDLSKAGSEKSR---LEER 353
++ Y++ F+ P+ +L + ++ P R + K DL K +E S+ +EE
Sbjct: 98 NNSYKFEIFSPSEGENQQTPQWVLHAQGKIYTEPTRNSQAKIDLEKYQAECSQAIEIEEH 157
Query: 354 QR 355
R
Sbjct: 158 YR 159
>pdb|3CUC|A Chain A, Crystal Structure Of A Fic Domain Containing Signaling
Protein (Bt_2513) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.71 A Resolution
pdb|3CUC|B Chain B, Crystal Structure Of A Fic Domain Containing Signaling
Protein (Bt_2513) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.71 A Resolution
Length = 291
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 42 NYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYS 82
+YWK + G D++ + + + S PNSVL E+ Y+
Sbjct: 111 DYWKNAKTPDGQDIRXQIKVGEYKSRPNSVLTATGEVFSYA 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,218,032
Number of Sequences: 62578
Number of extensions: 633950
Number of successful extensions: 1550
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1540
Number of HSP's gapped (non-prelim): 10
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)