Query 014128
Match_columns 430
No_of_seqs 193 out of 1026
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 05:58:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zhx_A KES1 protein; oxysterol 100.0 3.2E-90 1.1E-94 712.3 34.8 319 38-378 8-371 (438)
2 4g3b_A Alpha4F3D; alpha helix, 54.0 17 0.0006 21.3 3.5 21 343-363 3-23 (26)
3 3twe_A Alpha4H; unknown functi 52.3 20 0.0007 21.2 3.6 21 343-363 3-23 (27)
4 3sbu_A Hypothetical NTF2-like 40.3 23 0.00079 33.2 4.0 40 198-237 206-247 (261)
5 2c5i_P Vacuolar protein sortin 38.1 8.3 0.00028 23.9 0.4 10 139-148 1-10 (29)
6 2w6b_A RHO guanine nucleotide 30.1 46 0.0016 23.8 3.2 20 343-362 26-45 (56)
7 1mw5_A Hypothetical protein HI 21.5 22 0.00075 29.9 0.3 44 50-94 111-169 (187)
8 3syn_E ATP-binding protein YLX 16.8 68 0.0023 18.3 1.5 18 338-355 4-21 (23)
9 3l4f_A RHO guanine nucleotide 13.0 2E+02 0.007 20.9 3.6 21 342-362 22-42 (61)
10 2v2f_A Penicillin binding prot 12.2 98 0.0034 18.0 1.5 14 249-262 7-20 (26)
No 1
>1zhx_A KES1 protein; oxysterol,sterol binding protein, lipid binding protein; HET: HC3; 1.50A {Saccharomyces cerevisiae} SCOP: d.338.1.1 PDB: 1zht_A* 1zhw_A* 1zhy_A* 1zhz_A* 3spw_A* 1zi7_A
Probab=100.00 E-value=3.2e-90 Score=712.32 Aligned_cols=319 Identities=24% Similarity=0.399 Sum_probs=285.8
Q ss_pred cccchHHHHHhhccCc---cccCCcccCcccccccchhHHhhccccchHhhhcccCCC----------C------HHHHH
Q 014128 38 EERDNYWKMMQKYIGA---DVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECE----------D------PYMRL 98 (430)
Q Consensus 38 ~~~~slw~~lk~~iGk---DLts~islPv~~~EP~S~Lqr~ae~~ey~~lL~~Aa~~~----------d------~~eRm 98 (430)
..+.|+|+.|+++||+ ||+ +|||||+||||+|+||+++++|+|++||++||..+ | |++||
T Consensus 8 ~~~~s~w~~~lK~i~k~g~DLS-kIslPv~i~EP~SlLE~~~~~~e~~dLL~~aa~~~~~~~~a~~~~D~~~~~~p~eRm 86 (438)
T 1zhx_A 8 YASSSSWTSFLKSIASFNGDLS-SLSAPPFILSPISLTEFSQYWAEHPELFLEPSFINDDNYKEHCLIDPEVESPELARM 86 (438)
T ss_dssp HTTSHHHHHHHHTTTTCCSCGG-GSCCCGGGEEEEEGGGGGGGGCSCHHHHHGGGGCCTTTGGGSCTTCTTCSCHHHHHH
T ss_pred cccccHHHHHHHHhhhcCCChh-hcccCchhcCCccHHHHHHHhhhhHHHHhhhhhcccccccccccCCccccCCHHHHH
Confidence 5678999988778865 996 59999999999999999999999999999888766 9 99999
Q ss_pred HHHHHHHHhhhhh-c-------cccCCCCCCCCCCeEEEEecC------C-eEEEEeecccCCCeeEEEEECC--CeEEE
Q 014128 99 VYASSWALSIYFA-Y-------RRAWKPFNPVLGETFEMVNHG------G-VTFIAEQVSHHPPMSAGHAENE--HFIYD 161 (430)
Q Consensus 99 ~~V~af~iS~~~~-~-------~r~~KPfNPiLGETfe~~~~~------g-~~~iaEQVSHHPPIsA~~~e~~--~~~~~ 161 (430)
++|++|+||+|+. + .+.+|||||||||||+|.+++ | ++|||||||||||||||||+++ +|.++
T Consensus 87 ~~V~af~lS~~~~~y~~~~~~~~~~kKPfNPiLGETFe~~~~d~~~~~~g~~~~iaEQVSHHPPISA~~~e~~~~g~~~~ 166 (438)
T 1zhx_A 87 LAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLLSEQVSHHPPVTAFSIFNDKNKVKLQ 166 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCEEECCCTTCEEEEEECCTTCTTTCCEEEEEEEEEETTEEEEEEEEETTTTEEEE
T ss_pred HHHHHHHHhhhhhhcccccccccccccCcCCcccceEEEEecCccCCCCCcEEEEEEeccCCCCeeEEEEEcCCCCEEEE
Confidence 9999999999864 2 568999999999999999854 6 8999999999999999999996 59999
Q ss_pred EEeceeeeEEee-EEEEEEeeEEEEEEecCCeEEEEeCCCceeeeeeccceeEecCCcEEEEeCCCCCEEEEEEecCccc
Q 014128 162 VTSKLRTKFLGN-SIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFQPCGWF 240 (430)
Q Consensus 162 ~~~~~~~kF~G~-sv~v~~~G~~~i~~~~~ge~Y~~~~P~~~v~nii~G~~~~e~~G~~~I~~~~tg~~a~i~F~~~~~f 240 (430)
|+..+++||+|+ ||+|.+.|.++|+|+ ||+|+|++|+++|+|||+|++|+|++|+|.|+| +||++|+|+|+++|||
T Consensus 167 g~~~~kskF~G~~Sv~v~~~G~~~l~l~--~E~Y~~t~P~~~v~gIi~G~~~vE~~G~~~I~~-~tg~~~~l~F~~kg~f 243 (438)
T 1zhx_A 167 GYNQIKASFTKSLMLTVKQFGHTMLDIK--DESYLVTPPPLHIEGILVASPFVELEGKSYIQS-STGLLCVIEFSGRGYF 243 (438)
T ss_dssp EEEEEEEEECTTCCEEEEEECCEEEEET--TEEEEEECCCEEEECTTTTCCEEEECSEEEEEE-TTSCEEEEEEECSSSS
T ss_pred EEeeeEEEEcCceEEEEEcceEEEEEEC--CcEEEEecCcEEEEEEEecceeEecCCeEEEEc-CCCCEEEEEEcCCCCc
Confidence 999999999999 999999999999997 899999999999999999999999999999999 7999999999999999
Q ss_pred cCcceEEEEEEECC------CCCceEEEeeeecceeeeeeCCCCCCCCCCCceeEEEeeccCCCCCccccceeeeecCCC
Q 014128 241 GAGRYEVDGYVYDA------AEQPKILMTGKWNESMSYQPCDSEGEPLPGTELKEVWRVADAPEDDKYQYTYFTHKLNSF 314 (430)
Q Consensus 241 g~~~~~v~G~V~d~------~g~~~~~i~G~W~~~l~~~~~~~~g~~~~~~~~~~lW~~~~~p~~~~y~ft~fa~~LNe~ 314 (430)
|++.|.|+|.|++. +|+++++|.|+|++.|++.+...+ .....+|++.+.|... + .+
T Consensus 244 ~g~~n~v~G~I~~~~~~~~~~~~~l~~i~G~W~~~l~i~~~~~~------~~~~~~~~~~~~~~~~------~--~v--- 306 (438)
T 1zhx_A 244 SGKKNSFKARIYKDSKDSKDKEKALYTISGQWSGSSKIIKANKK------EESRLFYDAARIPAEH------L--NV--- 306 (438)
T ss_dssp CSSSSEEEEEEESSTTGGGCGGGCSEEEEEETTSEEEEEETTCG------GGCEEEEETTTSCCCC------C--BC---
T ss_pred CCCccEEEEEEEcCCcccCCCCcEEEEEEEEEcceEEEEeCCCC------ccceEEeccCCCCCcc------c--cC---
Confidence 99999999999985 567899999999999999765321 1135799998876421 1 11
Q ss_pred CCCCCcCCCCCCcc--chhHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHhcCCCceecceeecCC
Q 014128 315 DTAPKKLLPSDSRL--RPDRYALEKGDLSKAGSEKSRLEERQRAEKRIREAKDDMFTPKWFDLSDE 378 (430)
Q Consensus 315 ~~~~~~~~ptDSR~--RpD~rale~Gd~d~A~~eK~~LEe~QR~~rk~R~~~~~~w~Pr~F~~~~d 378 (430)
.+ ...++|||||+ |||+|||++||++.|+++|.+|||+||++||+|+++|++|+||||++.++
T Consensus 307 ~p-~e~q~ptdSR~~Wr~d~~ale~Gd~d~A~~eK~rLEe~QR~~rk~re~~g~~w~Pr~F~~~~~ 371 (438)
T 1zhx_A 307 KP-LEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGISWQRRWFKDFDY 371 (438)
T ss_dssp CC-GGGCCTTBHHHHTHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSEEEEEC
T ss_pred CC-hhhCCCcccchhhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccceEEECCc
Confidence 11 13568999997 89999999999999999999999999999999999999999999999876
No 2
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=54.01 E-value=17 Score=21.30 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 014128 343 AGSEKSRLEERQRAEKRIREA 363 (430)
Q Consensus 343 A~~eK~~LEe~QR~~rk~R~~ 363 (430)
|.+.-..||+.|...||.|++
T Consensus 3 ade~ykeled~qerlrk~rkk 23 (26)
T 4g3b_A 3 ADEXYKELEDXQERLRKXRKK 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 455667799999988888875
No 3
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=52.32 E-value=20 Score=21.19 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 014128 343 AGSEKSRLEERQRAEKRIREA 363 (430)
Q Consensus 343 A~~eK~~LEe~QR~~rk~R~~ 363 (430)
|.+.-..||+.|...||.|++
T Consensus 3 adelykeledlqerlrklrkk 23 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556667899999988998875
No 4
>3sbu_A Hypothetical NTF2-like protein; cystatin-like, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; HET: MLY; 2.15A {Bacteroides fragilis}
Probab=40.32 E-value=23 Score=33.19 Aligned_cols=40 Identities=20% Similarity=0.394 Sum_probs=32.1
Q ss_pred CCCceeeeeeccceeE-ecCCc-EEEEeCCCCCEEEEEEecC
Q 014128 198 PPPTKVHNLIFGRTWI-DSPGD-MVMTNLTTGDKVVLYFQPC 237 (430)
Q Consensus 198 ~P~~~v~nii~G~~~~-e~~G~-~~I~~~~tg~~a~i~F~~~ 237 (430)
+|.-.+.||++|+.+. +--.+ +.|+.-.+|+..++.|+..
T Consensus 206 lP~~~i~NI~YGQky~~~s~~KIl~~rGi~NG~e~~l~Fkk~ 247 (261)
T 3sbu_A 206 LPADXLSNINYGQQNDDNASHKILALXGIGNGFSNILYFQRX 247 (261)
T ss_dssp CCSSEEEEEESSCCCCTTCSEEEEEEEESSSCCEEEEEEEEE
T ss_pred cCcccceeeeccccccCCCCceEEEEEeecCceeEEEEEeec
Confidence 4889999999999994 43333 3677889999999999865
No 5
>2c5i_P Vacuolar protein sorting protein 51; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.3A {Saccharomyces cerevisiae}
Probab=38.06 E-value=8.3 Score=23.85 Aligned_cols=10 Identities=50% Similarity=0.773 Sum_probs=2.8
Q ss_pred EeecccCCCe
Q 014128 139 AEQVSHHPPM 148 (430)
Q Consensus 139 aEQVSHHPPI 148 (430)
|||+||--|+
T Consensus 1 aeqItHKK~l 10 (29)
T 2c5i_P 1 AEQISHKKSL 10 (29)
T ss_dssp ------CCCC
T ss_pred CccccccCCc
Confidence 6888887765
No 6
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=30.12 E-value=46 Score=23.78 Aligned_cols=20 Identities=40% Similarity=0.483 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014128 343 AGSEKSRLEERQRAEKRIRE 362 (430)
Q Consensus 343 A~~eK~~LEe~QR~~rk~R~ 362 (430)
-...|.-||+.||+++++.+
T Consensus 26 ~k~m~k~lEeEqkARk~LE~ 45 (56)
T 2w6b_A 26 NKKMKKSLEEEQRARKDLEK 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999877643
No 7
>1mw5_A Hypothetical protein HI1480; structural genomics, structure 2 function project, S2F, unknown function; HET: MSE; 2.10A {Haemophilus influenzae} SCOP: d.259.1.1
Probab=21.54 E-value=22 Score=29.87 Aligned_cols=44 Identities=34% Similarity=0.585 Sum_probs=31.7
Q ss_pred ccCc---cccCCcccCcccccccchhHHhh------------ccccchHhhhcccCCCCH
Q 014128 50 YIGA---DVQSLVTLPVFISEPNSVLQRMA------------ELMEYSHLLDLADECEDP 94 (430)
Q Consensus 50 ~iGk---DLts~islPv~~~EP~S~Lqr~a------------e~~ey~~lL~~Aa~~~d~ 94 (430)
.||+ ||+ .++.|.+++-|-||--|++ -.|+|.+-|+--.+..||
T Consensus 111 kigsepldls-nlpapfyvllpesfaaritllvqdkalpyvrvsmeywhaleykgelndp 169 (187)
T 1mw5_A 111 KIGSEPLDLS-NLPAPFYVLLPESFAARITLLVQDKALPYVRVSMEYWHALEYKGELNDP 169 (187)
T ss_dssp HHHHSCCEET-TEECCEEEEEESSHHHHHHHHHHCSEEEEEEEEEEEGGGGSCCCSCC--
T ss_pred cccCCCcccc-cCCCceeEeccHHhhhHhhhhhhcccCceeeeeHHHHHHHHhccccCCh
Confidence 3675 885 4899999999999988876 357888777655555554
No 8
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=16.81 E-value=68 Score=18.26 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=13.4
Q ss_pred CChhHHHHHHHHHHHHHH
Q 014128 338 GDLSKAGSEKSRLEERQR 355 (430)
Q Consensus 338 Gd~d~A~~eK~~LEe~QR 355 (430)
+.+|.|.....++|.+.|
T Consensus 4 nrydqaatlrakmekrer 21 (23)
T 3syn_E 4 NRYDQAATLRAKMEKRER 21 (26)
T ss_pred chHHHHHHHHHHHHHHhh
Confidence 567888888888886655
No 9
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=12.98 E-value=2e+02 Score=20.92 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014128 342 KAGSEKSRLEERQRAEKRIRE 362 (430)
Q Consensus 342 ~A~~eK~~LEe~QR~~rk~R~ 362 (430)
.....|.-+|+.||++++.++
T Consensus 22 e~k~~k~~le~eqraRk~LE~ 42 (61)
T 3l4f_A 22 DNKKMKKSLEEEQRARKDLEK 42 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445678889999999887764
No 10
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=12.20 E-value=98 Score=18.01 Aligned_cols=14 Identities=21% Similarity=0.249 Sum_probs=11.1
Q ss_pred EEEECCCCCceEEE
Q 014128 249 GYVYDAAEQPKILM 262 (430)
Q Consensus 249 G~V~d~~g~~~~~i 262 (430)
-.|||++|+.+..|
T Consensus 7 s~IYD~~g~~i~~l 20 (26)
T 2v2f_A 7 SKIYDNKNQLIADL 20 (26)
T ss_pred CEEEeCCCCEeeec
Confidence 46899999887766
Done!