Your job contains 1 sequence.
>014129
MEIWDTSTEAVIKALRSRGWCFGNIQEVTAIIAINSALIDDKDPRKVADSTESELLNTDL
KSIGGKSLPDPTRKFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIE
ITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNR
KYSVFSRSSLRPSQESGGGGPPPFEKFQIGAPSHQLAQRGRFYHDDSESTAKTSEPVAVE
TTGNTKVMPSTSQQTTGLEKNNSVTSPKVTRVEERTEEDPSSSQARPKEVVESFPVQNQA
ASQKLLQKMSTSNQDNRHSRGRRYRGKGKEEEPAVFTLEEWEKRKAGAKPFVNHKLPDTS
NDEDLAWQLQNQLDLEDSHEQSGMHDSQAENIRMSMFSYERDDRVHGTENRGRGRGRGRR
KGRGRGRGRG
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 014129
(430 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2147615 - symbol:AT5G19950 "AT5G19950" species... 810 1.1e-80 1
UNIPROTKB|F1NAJ8 - symbol:TDRD3 "Tudor domain-containing ... 245 5.4e-18 1
UNIPROTKB|Q5ZMS6 - symbol:TDRD3 "Tudor domain-containing ... 245 5.6e-18 1
UNIPROTKB|Q6P1U3 - symbol:tdrd3 "Tudor domain-containing ... 238 6.7e-18 3
MGI|MGI:2444023 - symbol:Tdrd3 "tudor domain containing 3... 239 6.2e-17 2
FB|FBgn0036450 - symbol:CG13472 species:7227 "Drosophila ... 219 6.6e-16 2
UNIPROTKB|G3X6R8 - symbol:TDRD3 "Tudor domain-containing ... 222 2.5e-15 1
UNIPROTKB|Q2HJG4 - symbol:TDRD3 "Tudor domain-containing ... 222 2.5e-15 1
ZFIN|ZDB-GENE-040426-19 - symbol:tdrd3 "tudor domain cont... 216 1.2e-14 1
UNIPROTKB|Q9H7E2 - symbol:TDRD3 "Tudor domain-containing ... 181 1.1e-10 2
UNIPROTKB|Q6NRP6 - symbol:tdrd3 "Tudor domain-containing ... 164 4.1e-09 3
UNIPROTKB|E1BXW9 - symbol:TDRD3 "Tudor domain-containing ... 165 5.1e-09 1
RGD|1310126 - symbol:Tdrd3 "tudor domain containing 3" sp... 161 1.4e-08 1
UNIPROTKB|Q66HC1 - symbol:Tdrd3 "Tudor domain-containing ... 161 1.4e-08 1
TAIR|locus:2167376 - symbol:RMI1 "AT5G63540" species:3702... 142 1.9e-06 1
UNIPROTKB|A4IF98 - symbol:RMI1 "RecQ-mediated genome inst... 141 2.2e-06 1
UNIPROTKB|Q9H9A7 - symbol:RMI1 "RecQ-mediated genome inst... 140 2.8e-06 1
MGI|MGI:1921636 - symbol:Rmi1 "RMI1, RecQ mediated genome... 127 5.9e-06 2
UNIPROTKB|Q5ZHV8 - symbol:RMI1 "RecQ-mediated genome inst... 131 2.8e-05 1
WB|WBGene00011576 - symbol:T07C12.12 species:6239 "Caenor... 100 0.00022 3
ZFIN|ZDB-GENE-040426-829 - symbol:rmi1 "RMI1, RecQ mediat... 118 0.00057 1
>TAIR|locus:2147615 [details] [associations]
symbol:AT5G19950 "AT5G19950" species:3702 "Arabidopsis
thaliana" [GO:0005739 "mitochondrion" evidence=IDA] GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR UniGene:At.31238
UniGene:At.66761 InterPro:IPR013894 Pfam:PF08585 eggNOG:NOG300229
EMBL:AY099764 EMBL:AY088786 EMBL:BT000297 EMBL:AK317064
IPI:IPI00541025 RefSeq:NP_568387.1 RefSeq:NP_850854.1
ProteinModelPortal:Q8L502 SMR:Q8L502 IntAct:Q8L502 PaxDb:Q8L502
PRIDE:Q8L502 EnsemblPlants:AT5G19950.1 EnsemblPlants:AT5G19950.2
GeneID:832117 KEGG:ath:AT5G19950 TAIR:At5g19950
HOGENOM:HOG000131650 InParanoid:Q8L502 OMA:DLAWQLQ PhylomeDB:Q8L502
ProtClustDB:CLSN2689808 ArrayExpress:Q8L502 Genevestigator:Q8L502
Uniprot:Q8L502
Length = 443
Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
Identities = 193/427 (45%), Positives = 260/427 (60%)
Query: 5 DTSTEAVIKALRSRGWCFGNIQEVTAIIAINSALIDDKDPR-KVADSTESELLNTDLKSI 63
D + VI AL SRGWCF +++ + +++ S+LI + + +S E+ELLN D+K I
Sbjct: 11 DHTHTVVINALTSRGWCFRDVEYLKSLVTEISSLIGGGNKTGAIVESVEAELLNMDIKLI 70
Query: 64 GGKSLPDPT--RKFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEI 121
GGKSLPDPT R+ SH+QGP VLQ++ VRD++RSS EEF G+ R+LK LTDG EI
Sbjct: 71 GGKSLPDPTELRRCSHLQGPKVLQISYVRDVTRSSAEEFVGSSTGKRVLKFALTDGKTEI 130
Query: 122 TAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRK 181
+A+EYSHIP+I DV PGTKVRLENK + G+VCL P VTVLGG V SL EEWQM +K
Sbjct: 131 SALEYSHIPTINNDVTPGTKVRLENKAVIRDGLVCLTPKEVTVLGGYVQSLTEEWQMKKK 190
Query: 182 YSVFSRSSLRPSQESXXXXXXX-FEKFQIGAPSHQLAQRGRFYHDDSESTAKTSEPVAVE 240
Y+ SL SQES FE+ +I SH + D +++T++ + P+A E
Sbjct: 191 YA-----SLARSQESKAGDGPPPFEELKIRTGSH--------HRDYNKTTSRNNVPIAAE 237
Query: 241 TT--------GNTKVMPSTSQQTT-GLEKNNSVTSPKVTRVEERTEEDPSSSQARPKEVV 291
++ G + + + T +++N + + PK++ VE +E SSS RPK+VV
Sbjct: 238 SSVKHAGGEKGESSEVDGNKRGTNKNIQRNPADSDPKIS-VEVENQEKRSSSDTRPKQVV 296
Query: 292 ESFPVQNQAASQKLLQKMSTSNQDNRH-------SXXXXXXXXXXXXXPAVFTLEEWEKR 344
E+ P+QNQAA+Q LL+KM S+ ++R AVFTL+EWEKR
Sbjct: 297 EAVPLQNQAAAQILLEKMKHSSSNDRQYQGRRGRGRGRGRGRGREEEDSAVFTLDEWEKR 356
Query: 345 KAG--AKPFVNHKLPDTSNDEDLAWQLQNQLDLEDSHEQSGMHDSQAENIRMSMFSYER- 401
G A P NH DT+ DEDLAWQLQNQ DLEDS+ Q M + A +IRM+MF Y R
Sbjct: 357 NTGGGALPTANHP-SDTTRDEDLAWQLQNQFDLEDSYGQE-MPGAGAADIRMNMFDYGRT 414
Query: 402 -DDRVHG 407
D+ HG
Sbjct: 415 EDNFGHG 421
>UNIPROTKB|F1NAJ8 [details] [associations]
symbol:TDRD3 "Tudor domain-containing protein 3"
species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0035064
"methylated histone residue binding" evidence=IEA]
InterPro:IPR000449 InterPro:IPR009060 InterPro:IPR010304
Pfam:PF00627 Pfam:PF06003 InterPro:IPR002999 GO:GO:0005634
GO:GO:0005737 GO:GO:0006397 GO:GO:0003682 GO:GO:0003723
GO:GO:0003713 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
SMART:SM00333 PROSITE:PS50304 SUPFAM:SSF46934 InterPro:IPR013894
Pfam:PF08585 IPI:IPI00598582 GeneTree:ENSGT00440000038925
EMBL:AADN02005667 EMBL:AADN02005668 EMBL:AADN02005669
EMBL:AADN02005670 Ensembl:ENSGALT00000036503 ArrayExpress:F1NAJ8
Uniprot:F1NAJ8
Length = 723
Score = 245 (91.3 bits), Expect = 5.4e-18, P = 5.4e-18
Identities = 53/137 (38%), Positives = 81/137 (59%)
Query: 56 LNTDLKSIGGKSLPDPTR--KFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLV 113
LNTDL++IG K LP K ++GP VLQ+ +R++S E S + R+L+L
Sbjct: 41 LNTDLRTIGKKFLPSDINGGKVEKLEGPCVLQIQKIRNVSAPKDNEES--QAAPRMLRLQ 98
Query: 114 LTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLH 173
+TDGH TAIEY+ + I + PGTK++L + V +G + L+ + VLGG V L
Sbjct: 99 MTDGHTSCTAIEYNSMSKISLNTPPGTKIKLSGIIEVRNGFLLLDDSNTAVLGGEVEHLI 158
Query: 174 EEWQMNRKYSVFSRSSL 190
E+W++ R + SRS++
Sbjct: 159 EKWELQRSLAKHSRSNI 175
>UNIPROTKB|Q5ZMS6 [details] [associations]
symbol:TDRD3 "Tudor domain-containing protein 3"
species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0035064 "methylated histone residue binding" evidence=ISS]
[GO:0003713 "transcription coactivator activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] InterPro:IPR000449
InterPro:IPR009060 InterPro:IPR010304 Pfam:PF00627 Pfam:PF06003
InterPro:IPR002999 GO:GO:0005634 GO:GO:0005737 GO:GO:0006397
GO:GO:0003682 GO:GO:0016568 GO:GO:0003723 GO:GO:0003713
InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 SMART:SM00333
PROSITE:PS50304 GO:GO:0035064 SUPFAM:SSF46934 InterPro:IPR013894
Pfam:PF08585 CTD:81550 eggNOG:NOG300229 HOGENOM:HOG000154539
HOVERGEN:HBG059153 EMBL:AJ719308 IPI:IPI00598582
RefSeq:NP_001025993.1 UniGene:Gga.9367 HSSP:Q9H7E2
ProteinModelPortal:Q5ZMS6 SMR:Q5ZMS6 GeneID:418823 KEGG:gga:418823
NextBio:20821961 Uniprot:Q5ZMS6
Length = 741
Score = 245 (91.3 bits), Expect = 5.6e-18, P = 5.6e-18
Identities = 53/137 (38%), Positives = 81/137 (59%)
Query: 56 LNTDLKSIGGKSLPDPTR--KFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLV 113
LNTDL++IG K LP K ++GP VLQ+ +R++S E S + R+L+L
Sbjct: 41 LNTDLRTIGKKFLPSDINGGKVEKLEGPCVLQIQKIRNVSAPKDNEES--QAAPRMLRLQ 98
Query: 114 LTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLH 173
+TDGH TAIEY+ + I + PGTK++L + V +G + L+ + VLGG V L
Sbjct: 99 MTDGHTSCTAIEYNSMSKISLNTPPGTKIKLSGIIEVRNGFLLLDDSNTAVLGGEVEHLI 158
Query: 174 EEWQMNRKYSVFSRSSL 190
E+W++ R + SRS++
Sbjct: 159 EKWELQRSLAKHSRSNI 175
>UNIPROTKB|Q6P1U3 [details] [associations]
symbol:tdrd3 "Tudor domain-containing protein 3"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0035064 "methylated histone residue binding" evidence=ISS]
InterPro:IPR000449 InterPro:IPR009060 Pfam:PF00627
InterPro:IPR002999 GO:GO:0005634 GO:GO:0005737 GO:GO:0003682
GO:GO:0016568 GO:GO:0003713 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 Pfam:PF00567 SMART:SM00333 PROSITE:PS50304
GO:GO:0035064 SUPFAM:SSF46934 InterPro:IPR013894 Pfam:PF08585
CTD:81550 eggNOG:NOG300229 HOGENOM:HOG000154539 HOVERGEN:HBG059153
OrthoDB:EOG4WM4T9 HSSP:Q9H7E2 EMBL:BC064868 RefSeq:NP_989385.1
UniGene:Str.15251 GeneID:395019 KEGG:xtr:395019
Xenbase:XB-GENE-949075 InParanoid:Q6P1U3 Uniprot:Q6P1U3
Length = 710
Score = 238 (88.8 bits), Expect = 6.7e-18, Sum P(3) = 6.7e-18
Identities = 54/137 (39%), Positives = 79/137 (57%)
Query: 56 LNTDLKSIGGKSLPDPTR--KFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLV 113
LNTDL++ G K LP+ K + GP VLQ+ +R+IS E S + R+L+L
Sbjct: 6 LNTDLRTTGKKFLPNDINGGKVEKVNGPCVLQIQKIRNISAPKDNEES--QAAPRMLRLQ 63
Query: 114 LTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLH 173
LTDGH TAIE +++ I + PGTK++L + V +G + L+ VLGG V L
Sbjct: 64 LTDGHTSCTAIELNYLSKISLNTPPGTKIKLLGTIEVKNGYLLLDDTNTVVLGGEVEHLI 123
Query: 174 EEWQMNRKYSVFSRSSL 190
E+W++ R S SRS++
Sbjct: 124 EKWELQRSLSKHSRSNI 140
Score = 45 (20.9 bits), Expect = 6.7e-18, Sum P(3) = 6.7e-18
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 370 QNQLDLEDSHEQSGMHDSQAENIRMSMFSYERDDRVHGTE 409
QN + E SH++ G D Q N S F +R R TE
Sbjct: 491 QNS-NTEGSHQKRGKKDDQRYN---SEFYTDRRARTGNTE 526
Score = 38 (18.4 bits), Expect = 6.7e-18, Sum P(3) = 6.7e-18
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 271 RVEERTEEDPSSSQARPKEVVESFP-VQNQAASQKLLQ-KMSTSNQDNRH 318
R R EED + ARP F ++++ S + K+ + +Q H
Sbjct: 308 RGRTRAEEDDELTSARPSAPSTLFDFLESKMGSFSIEDHKLQSQSQSQVH 357
>MGI|MGI:2444023 [details] [associations]
symbol:Tdrd3 "tudor domain containing 3" species:10090 "Mus
musculus" [GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0035064 "methylated histone residue binding" evidence=ISO]
InterPro:IPR000449 InterPro:IPR009060 InterPro:IPR010304
Pfam:PF00627 Pfam:PF06003 InterPro:IPR002999 MGI:MGI:2444023
GO:GO:0005634 GO:GO:0005737 GO:GO:0006397 GO:GO:0003682
GO:GO:0016568 GO:GO:0003723 GO:GO:0003713 InterPro:IPR015940
SMART:SM00165 PROSITE:PS50030 SMART:SM00333 PROSITE:PS50304
GO:GO:0035064 SUPFAM:SSF46934 InterPro:IPR013894 Pfam:PF08585
CTD:81550 eggNOG:NOG300229 HOGENOM:HOG000154539 HOVERGEN:HBG059153
OrthoDB:EOG4WM4T9 OMA:CDRPYSR EMBL:AK028617 EMBL:AK033390
EMBL:AC154562 EMBL:CT010453 EMBL:BC005670 EMBL:BC066144
IPI:IPI00227152 IPI:IPI00896611 IPI:IPI01008137
RefSeq:NP_001240684.1 RefSeq:NP_766193.3 UniGene:Mm.35168 PDB:2D9T
PDBsum:2D9T ProteinModelPortal:Q91W18 SMR:Q91W18 PhosphoSite:Q91W18
PaxDb:Q91W18 PRIDE:Q91W18 Ensembl:ENSMUST00000168275
Ensembl:ENSMUST00000169504 Ensembl:ENSMUST00000170865 GeneID:219249
KEGG:mmu:219249 UCSC:uc007uuf.2 UCSC:uc007uug.2 UCSC:uc011zpb.1
GeneTree:ENSGT00440000038925 InParanoid:Q91W18
EvolutionaryTrace:Q91W18 NextBio:376651 Bgee:Q91W18
CleanEx:MM_TDRD3 Genevestigator:Q91W18 Uniprot:Q91W18
Length = 743
Score = 239 (89.2 bits), Expect = 6.2e-17, Sum P(2) = 6.2e-17
Identities = 52/137 (37%), Positives = 81/137 (59%)
Query: 56 LNTDLKSIGGKSLPDPTR--KFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLV 113
LNTDL++IG K LP K ++GP VLQ+ VR+++ E S + R+L++
Sbjct: 41 LNTDLRTIGKKFLPSDINGGKVEKLEGPCVLQIQKVRNVAAPKDNEES--QAAPRMLRVQ 98
Query: 114 LTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLH 173
+TDGH TA+E+S+I I + PGTKV+L V + +G + L+ + TVLGG V L
Sbjct: 99 MTDGHTSCTAVEFSYISKISLNTPPGTKVKLSGTVDIKNGFLLLSDSNTTVLGGEVEHLI 158
Query: 174 EEWQMNRKYSVFSRSSL 190
++W + R +RS++
Sbjct: 159 DKWALQRSLLKHNRSNI 175
Score = 38 (18.4 bits), Expect = 6.2e-17, Sum P(2) = 6.2e-17
Identities = 23/105 (21%), Positives = 43/105 (40%)
Query: 208 QIGAPSHQLAQRGRFYHDDSESTAKTSE----------PVAVETTG--NTKVMPSTSQQT 255
Q G P H ++ R + ++ S K + PV + G N + P +
Sbjct: 539 QTGHPDHCYERKPRTMNSEAVSGLKIEKHFSVNTDYPRPVQSNSLGVPNGETAPPLKGRR 598
Query: 256 TG-LEKNNSVTS-PKVTRVEERTEEDPSSSQARPKEVVES-FPVQ 297
G ++ VT+ P ++ + S +P++V+ES PV+
Sbjct: 599 VGPIKSAGPVTAVPYDDKIFYNSGPKRRSGPIKPEKVIESSIPVE 643
>FB|FBgn0036450 [details] [associations]
symbol:CG13472 species:7227 "Drosophila melanogaster"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046331 "lateral
inhibition" evidence=IMP] InterPro:IPR000449 InterPro:IPR010304
Pfam:PF00627 Pfam:PF06003 InterPro:IPR002999 GO:GO:0005634
GO:GO:0005737 EMBL:AE014296 GO:GO:0006397 GO:GO:0003723
InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 GO:GO:0046331
SMART:SM00333 PROSITE:PS50304 InterPro:IPR013894 Pfam:PF08585
HSSP:Q16637 eggNOG:NOG300229 GeneTree:ENSGT00440000038925
EMBL:AY069766 RefSeq:NP_648724.1 UniGene:Dm.1961 SMR:Q9VUH8
EnsemblMetazoa:FBtr0075691 GeneID:39612 KEGG:dme:Dmel_CG13472
UCSC:CG13472-RA FlyBase:FBgn0036450 InParanoid:Q9VUH8 OMA:DKPAKEN
OrthoDB:EOG4N8PKX GenomeRNAi:39612 NextBio:814512 Uniprot:Q9VUH8
Length = 836
Score = 219 (82.2 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 61/181 (33%), Positives = 98/181 (54%)
Query: 13 KALRSRGWCFGNIQEVTAIIAINSALIDDKDPRKVADSTESELLNTDLKSIGGKSLPDPT 72
K LR GW +E I+ + + +D RK+ + + LN DL+ IGG +LP
Sbjct: 5 KKLREVGWYL--TEEGLKIV---TTAVGSEDVRKIVN----DALNRDLRDIGGGALP-AK 54
Query: 73 RKFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEITAIEYSHIPSI 132
R+ + + G IVLQV VR+I+ E S + RLL+L L+DG I A+E +P +
Sbjct: 55 REDATLPGKIVLQVQRVRNIAAPKANEES--KAAPRLLQLDLSDGQNSIKALELEPVPQL 112
Query: 133 PYDVVPGTKVRLE-NKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRKYSVFSRSSLR 191
+V PG+K+ + K+ + G + L + + +LGG V +L+E+W + R ++RS R
Sbjct: 113 NLNVAPGSKIYFKAEKLQLMQGFLLLKSSEIQLLGGRVDALYEKWDLARTMMRYARSG-R 171
Query: 192 P 192
P
Sbjct: 172 P 172
Score = 53 (23.7 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 208 QIGAPSHQLAQRGRFYHDDSE-STAKTSEPVAVETTGNTKVMPSTSQQTT----GLEKNN 262
Q+ + + AQ + +H+ S A S+ T +K+M S++ L K+
Sbjct: 615 QLHSQKPEKAQTNQKHHNPRHNSQANYSQLANGYTYDPSKIMGFQSKEANEFAMNLLKSQ 674
Query: 263 SVTSPKVTRVEERTEEDPSSS 283
VT P + EE +E P S
Sbjct: 675 GVTLPNEKQQEEEQQESPPMS 695
>UNIPROTKB|G3X6R8 [details] [associations]
symbol:TDRD3 "Tudor domain-containing protein 3"
species:9913 "Bos taurus" [GO:0035064 "methylated histone residue
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] InterPro:IPR000449
InterPro:IPR009060 Pfam:PF00627 InterPro:IPR002999 GO:GO:0005634
GO:GO:0003682 GO:GO:0003713 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 Pfam:PF00567 SMART:SM00333 PROSITE:PS50304
SUPFAM:SSF46934 InterPro:IPR013894 Pfam:PF08585 UniGene:Bt.13745
OMA:CDRPYSR GeneTree:ENSGT00440000038925 EMBL:DAAA02032549
EMBL:DAAA02032550 EMBL:DAAA02032551 EMBL:DAAA02032552
EMBL:DAAA02032553 EMBL:DAAA02032554 EMBL:DAAA02032555
Ensembl:ENSBTAT00000012261 Uniprot:G3X6R8
Length = 722
Score = 222 (83.2 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 44/114 (38%), Positives = 72/114 (63%)
Query: 77 HIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEITAIEYSHIPSIPYDV 136
+++GP VLQ+ +R+++ E S + R+L+L +TDGHI TA+E+S++ I +
Sbjct: 42 NLEGPCVLQIQKIRNVAAPKDNEES--QAAPRMLRLQMTDGHISCTAVEFSYLSKISLNT 99
Query: 137 VPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRKYSVFSRSSL 190
PGTKV+L V + +G + LN + TVLGG V L E+W++ R S +RS++
Sbjct: 100 PPGTKVKLSGAVDIKNGFLLLNDSNTTVLGGEVEHLIEKWELQRSLSKHNRSNI 153
>UNIPROTKB|Q2HJG4 [details] [associations]
symbol:TDRD3 "Tudor domain-containing protein 3"
species:9913 "Bos taurus" [GO:0035064 "methylated histone residue
binding" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=ISS] [GO:0003713 "transcription coactivator activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] InterPro:IPR000449 InterPro:IPR009060 Pfam:PF00627
InterPro:IPR002999 GO:GO:0005634 GO:GO:0005737 GO:GO:0003682
GO:GO:0016568 GO:GO:0003713 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 Pfam:PF00567 SMART:SM00333 PROSITE:PS50304
GO:GO:0035064 SUPFAM:SSF46934 InterPro:IPR013894 Pfam:PF08585
EMBL:BC105432 IPI:IPI00709108 RefSeq:NP_001039891.1
UniGene:Bt.13745 ProteinModelPortal:Q2HJG4 SMR:Q2HJG4 GeneID:537918
KEGG:bta:537918 CTD:81550 eggNOG:NOG300229 HOGENOM:HOG000154539
HOVERGEN:HBG059153 InParanoid:Q2HJG4 OrthoDB:EOG4WM4T9
NextBio:20877244 Uniprot:Q2HJG4
Length = 722
Score = 222 (83.2 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 44/114 (38%), Positives = 72/114 (63%)
Query: 77 HIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEITAIEYSHIPSIPYDV 136
+++GP VLQ+ +R+++ E S + R+L+L +TDGHI TA+E+S++ I +
Sbjct: 42 NLEGPCVLQIQKIRNVAAPKDNEES--QAAPRMLRLQMTDGHISCTAVEFSYLSKISLNT 99
Query: 137 VPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRKYSVFSRSSL 190
PGTKV+L V + +G + LN + TVLGG V L E+W++ R S +RS++
Sbjct: 100 PPGTKVKLSGAVDIKNGFLLLNDSNTTVLGGEVEHLIEKWELQRSLSKHNRSNI 153
>ZFIN|ZDB-GENE-040426-19 [details] [associations]
symbol:tdrd3 "tudor domain containing 3"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0035064 "methylated histone residue binding" evidence=ISS]
[GO:0003713 "transcription coactivator activity" evidence=ISS]
[GO:2001141 "regulation of RNA biosynthetic process" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0016568
"chromatin modification" evidence=IEA] InterPro:IPR000449
InterPro:IPR009060 InterPro:IPR010304 Pfam:PF00627 Pfam:PF06003
InterPro:IPR002999 ZFIN:ZDB-GENE-040426-19 GO:GO:0005634
GO:GO:0005737 GO:GO:0006397 GO:GO:0003723 InterPro:IPR015940
SMART:SM00165 PROSITE:PS50030 SMART:SM00333 PROSITE:PS50304
SUPFAM:SSF46934 InterPro:IPR013894 Pfam:PF08585 OMA:CDRPYSR
GeneTree:ENSGT00440000038925 EMBL:CU459094 EMBL:CU464202
EMBL:CU633774 IPI:IPI00497779 Ensembl:ENSDART00000028955
ArrayExpress:F1RDB0 Bgee:F1RDB0 Uniprot:F1RDB0
Length = 734
Score = 216 (81.1 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 48/137 (35%), Positives = 77/137 (56%)
Query: 56 LNTDLKSIGGKSLPDPTR--KFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLV 113
LN DL+ IG LP + ++GP VLQV +R+++ S E S + R+L++
Sbjct: 42 LNNDLRPIGKSFLPADINSGRIEKLEGPCVLQVQKIRNVAASKDHEES--QAAPRMLRVQ 99
Query: 114 LTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLH 173
+TDGH T +E+ + I + PGTKV+L V V +GI+ L+ + + VLGG V +
Sbjct: 100 MTDGHTACTGLEFKQLSKISLNTPPGTKVKLLGVVQVKNGILLLDDSKIAVLGGEVDHMI 159
Query: 174 EEWQMNRKYSVFSRSSL 190
E+W+ R + SR ++
Sbjct: 160 EKWEFQRSLAKHSRRNI 176
>UNIPROTKB|Q9H7E2 [details] [associations]
symbol:TDRD3 "Tudor domain-containing protein 3"
species:9606 "Homo sapiens" [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0035064 "methylated histone residue binding"
evidence=IDA] InterPro:IPR000449 InterPro:IPR009060 Pfam:PF00627
InterPro:IPR002999 GO:GO:0005634 GO:GO:0005737 GO:GO:0003682
GO:GO:0016568 GO:GO:0003713 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 Pfam:PF00567 SMART:SM00333 PROSITE:PS50304
GO:GO:0035064 SUPFAM:SSF46934 EMBL:CH471124 PDB:2LTO PDBsum:2LTO
CTD:81550 eggNOG:NOG300229 HOGENOM:HOG000154539 HOVERGEN:HBG059153
OrthoDB:EOG4WM4T9 EMBL:EU643838 EMBL:AK024660 EMBL:BX537910
EMBL:AL354764 EMBL:AL512666 EMBL:BC030514 EMBL:BC060876
IPI:IPI00006571 IPI:IPI00924692 IPI:IPI00929228
RefSeq:NP_001139542.1 RefSeq:NP_001139543.1 RefSeq:NP_110421.1
UniGene:Hs.525061 PDB:1WJI PDB:3PMT PDB:3PNW PDB:3S6W PDBsum:1WJI
PDBsum:3PMT PDBsum:3PNW PDBsum:3S6W ProteinModelPortal:Q9H7E2
SMR:Q9H7E2 IntAct:Q9H7E2 STRING:Q9H7E2 PhosphoSite:Q9H7E2
DMDM:29337133 PaxDb:Q9H7E2 PRIDE:Q9H7E2 DNASU:81550
Ensembl:ENST00000196169 Ensembl:ENST00000377881
Ensembl:ENST00000377894 Ensembl:ENST00000535286 GeneID:81550
KEGG:hsa:81550 UCSC:uc001vhz.4 UCSC:uc001vib.4 UCSC:uc010aeg.3
GeneCards:GC13P060970 HGNC:HGNC:20612 HPA:CAB034925 MIM:614392
neXtProt:NX_Q9H7E2 PharmGKB:PA134962690 InParanoid:Q9H7E2
OMA:CDRPYSR PhylomeDB:Q9H7E2 ChiTaRS:TDRD3 EvolutionaryTrace:Q9H7E2
GenomeRNAi:81550 NextBio:71791 ArrayExpress:Q9H7E2 Bgee:Q9H7E2
CleanEx:HS_TDRD3 Genevestigator:Q9H7E2 Uniprot:Q9H7E2
Length = 651
Score = 181 (68.8 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 35/82 (42%), Positives = 54/82 (65%)
Query: 109 LLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGV 168
+L+L +TDGHI TA+E+S++ I + PGTKV+L V + +G + LN + TVLGG
Sbjct: 1 MLRLQMTDGHISCTAVEFSYMSKISLNTPPGTKVKLSGIVDIKNGFLLLNDSNTTVLGGE 60
Query: 169 VASLHEEWQMNRKYSVFSRSSL 190
V L E+W++ R S +RS++
Sbjct: 61 VEHLIEKWELQRSLSKHNRSNI 82
Score = 42 (19.8 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 19/65 (29%), Positives = 27/65 (41%)
Query: 256 TGLEKNNSVTSPKVTRVEERTEED------PSSSQARPKEVVESFPVQNQAASQKLLQKM 309
+GL +N P + V E ED P S R K+ S+P+ +Q S +K
Sbjct: 350 SGLPRNRGSERPSTSSVSEVWAEDRIKCDRPYSRYDRTKDT--SYPLGSQH-SDGAFKKR 406
Query: 310 STSNQ 314
S Q
Sbjct: 407 DNSMQ 411
Score = 39 (18.8 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 14/59 (23%), Positives = 26/59 (44%)
Query: 250 STSQQTTGLEKNNSVTSP--KVTRVEERTEEDP--SSSQARPKEVVESFPVQNQAASQK 304
S++ + G++ NN + P TR + R E+ P K V+E + S++
Sbjct: 303 SSNTEQNGVKDNNHLRHPPRNDTR-QPRNEKPPRFQRDSQNSKSVLEGSGLPRNRGSER 360
>UNIPROTKB|Q6NRP6 [details] [associations]
symbol:tdrd3 "Tudor domain-containing protein 3"
species:8355 "Xenopus laevis" [GO:0003682 "chromatin binding"
evidence=ISS] [GO:0003713 "transcription coactivator activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0035064
"methylated histone residue binding" evidence=ISS]
InterPro:IPR000449 InterPro:IPR009060 Pfam:PF00627
InterPro:IPR002999 GO:GO:0005634 GO:GO:0005737 GO:GO:0003682
GO:GO:0016568 GO:GO:0003713 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 Pfam:PF00567 SMART:SM00333 PROSITE:PS50304
GO:GO:0035064 SUPFAM:SSF46934 CTD:81550 HOVERGEN:HBG059153
HSSP:Q9H7E2 EMBL:BC070694 RefSeq:NP_001084774.1 UniGene:Xl.8087
ProteinModelPortal:Q6NRP6 SMR:Q6NRP6 GeneID:431810 KEGG:xla:431810
Xenbase:XB-GENE-949081 Uniprot:Q6NRP6
Length = 650
Score = 164 (62.8 bits), Expect = 4.1e-09, Sum P(3) = 4.1e-09
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 109 LLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGV 168
+L++ LTDGH TA+E +H+ I + PGTK++L + V +G + L+ VLGG
Sbjct: 1 MLRVQLTDGHTSCTAVELNHLSKISLNTPPGTKIKLLGTIEVKNGYLLLDDTNTVVLGGE 60
Query: 169 VASLHEEWQMNRKYSVFSRSSL 190
V L E+W++ R S SRS++
Sbjct: 61 VEHLIEKWELQRSLSKHSRSNI 82
Score = 42 (19.8 bits), Expect = 4.1e-09, Sum P(3) = 4.1e-09
Identities = 14/61 (22%), Positives = 26/61 (42%)
Query: 219 RGRFYHDDSESTAKTSEPVAVETTGNTKVMPSTSQQTTGLEKNNSVTSPKVTRVEERTEE 278
R R DD ++A+ S P + +K+ + + + S T PK +E+ +
Sbjct: 252 RTRGEEDDELTSARPSAPSTLFDFLESKMGSFSIEDNKSHSQAQSQTHPKALNLEQNGIK 311
Query: 279 D 279
D
Sbjct: 312 D 312
Score = 41 (19.5 bits), Expect = 4.1e-09, Sum P(3) = 4.1e-09
Identities = 19/71 (26%), Positives = 29/71 (40%)
Query: 340 EWEKRKAGAKPFVNHKLPDTSNDE-DLAWQLQNQLDLEDSHEQSGMHDSQAENIRMSMFS 398
E RK+ P + + ++ E + + QN E SH++ G D Q N S F
Sbjct: 397 EGSYRKSCNNPMQSRGIKGGNHTEVKVEFHHQNSTT-EGSHQKRGKKDDQRYN---SEFY 452
Query: 399 YERDDRVHGTE 409
+R R E
Sbjct: 453 TDRRARTGNNE 463
>UNIPROTKB|E1BXW9 [details] [associations]
symbol:TDRD3 "Tudor domain-containing protein 3"
species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000449 InterPro:IPR009060
InterPro:IPR010304 Pfam:PF00627 Pfam:PF06003 InterPro:IPR002999
GO:GO:0005634 GO:GO:0005737 GO:GO:0006397 GO:GO:0003723
InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 SMART:SM00333
PROSITE:PS50304 SUPFAM:SSF46934 GeneTree:ENSGT00440000038925
EMBL:AADN02005667 EMBL:AADN02005668 EMBL:AADN02005669
EMBL:AADN02005670 IPI:IPI00915201 Ensembl:ENSGALT00000027376
ArrayExpress:E1BXW9 Uniprot:E1BXW9
Length = 647
Score = 165 (63.1 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 109 LLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGV 168
+L+L +TDGH TAIEY+ + I + PGTK++L + V +G + L+ + VLGG
Sbjct: 1 MLRLQMTDGHTSCTAIEYNSMSKISLNTPPGTKIKLSGIIEVRNGFLLLDDSNTAVLGGE 60
Query: 169 VASLHEEWQMNRKYSVFSRSSL 190
V L E+W++ R + SRS++
Sbjct: 61 VEHLIEKWELQRSLAKHSRSNI 82
>RGD|1310126 [details] [associations]
symbol:Tdrd3 "tudor domain containing 3" species:10116 "Rattus
norvegicus" [GO:0003682 "chromatin binding" evidence=IEA;ISO;ISS]
[GO:0003713 "transcription coactivator activity"
evidence=IEA;ISO;ISS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO;ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0035064
"methylated histone residue binding" evidence=IEA;ISO;ISS]
InterPro:IPR000449 InterPro:IPR009060 InterPro:IPR010304
Pfam:PF00627 Pfam:PF06003 InterPro:IPR002999 RGD:1310126
GO:GO:0005634 GO:GO:0005737 GO:GO:0006397 GO:GO:0003682
GO:GO:0016568 GO:GO:0003723 GO:GO:0003713 InterPro:IPR015940
SMART:SM00165 PROSITE:PS50030 SMART:SM00333 PROSITE:PS50304
GO:GO:0035064 SUPFAM:SSF46934 CTD:81550 eggNOG:NOG300229
HOGENOM:HOG000154539 HOVERGEN:HBG059153 OrthoDB:EOG4WM4T9
HSSP:Q9H7E2 OMA:CDRPYSR GeneTree:ENSGT00440000038925 EMBL:BC081929
IPI:IPI00373487 RefSeq:NP_001012043.1 UniGene:Rn.18991
ProteinModelPortal:Q66HC1 SMR:Q66HC1 PhosphoSite:Q66HC1
PRIDE:Q66HC1 Ensembl:ENSRNOT00000012440 GeneID:306066
KEGG:rno:306066 UCSC:RGD:1310126 InParanoid:Q66HC1 NextBio:655449
ArrayExpress:Q66HC1 Genevestigator:Q66HC1 Uniprot:Q66HC1
Length = 651
Score = 161 (61.7 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 31/82 (37%), Positives = 51/82 (62%)
Query: 109 LLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGV 168
+L++ +TDGH TA+E+S+I I + PGTKV+L V + +G + L+ + TVLGG
Sbjct: 1 MLRVQMTDGHTSCTAVEFSYISKISLNTPPGTKVKLSGTVDIKNGFLLLSDSNTTVLGGE 60
Query: 169 VASLHEEWQMNRKYSVFSRSSL 190
V L ++W + R +RS++
Sbjct: 61 VEHLIDKWALQRSLLKHNRSNI 82
>UNIPROTKB|Q66HC1 [details] [associations]
symbol:Tdrd3 "Tudor domain-containing protein 3"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000449 InterPro:IPR009060 InterPro:IPR010304
Pfam:PF00627 Pfam:PF06003 InterPro:IPR002999 RGD:1310126
GO:GO:0005634 GO:GO:0005737 GO:GO:0006397 GO:GO:0003682
GO:GO:0016568 GO:GO:0003723 GO:GO:0003713 InterPro:IPR015940
SMART:SM00165 PROSITE:PS50030 SMART:SM00333 PROSITE:PS50304
GO:GO:0035064 SUPFAM:SSF46934 CTD:81550 eggNOG:NOG300229
HOGENOM:HOG000154539 HOVERGEN:HBG059153 OrthoDB:EOG4WM4T9
HSSP:Q9H7E2 OMA:CDRPYSR GeneTree:ENSGT00440000038925 EMBL:BC081929
IPI:IPI00373487 RefSeq:NP_001012043.1 UniGene:Rn.18991
ProteinModelPortal:Q66HC1 SMR:Q66HC1 PhosphoSite:Q66HC1
PRIDE:Q66HC1 Ensembl:ENSRNOT00000012440 GeneID:306066
KEGG:rno:306066 UCSC:RGD:1310126 InParanoid:Q66HC1 NextBio:655449
ArrayExpress:Q66HC1 Genevestigator:Q66HC1 Uniprot:Q66HC1
Length = 651
Score = 161 (61.7 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 31/82 (37%), Positives = 51/82 (62%)
Query: 109 LLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGV 168
+L++ +TDGH TA+E+S+I I + PGTKV+L V + +G + L+ + TVLGG
Sbjct: 1 MLRVQMTDGHTSCTAVEFSYISKISLNTPPGTKVKLSGTVDIKNGFLLLSDSNTTVLGGE 60
Query: 169 VASLHEEWQMNRKYSVFSRSSL 190
V L ++W + R +RS++
Sbjct: 61 VEHLIDKWALQRSLLKHNRSNI 82
>TAIR|locus:2167376 [details] [associations]
symbol:RMI1 "AT5G63540" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IMP] [GO:0007126 "meiosis"
evidence=IMP] [GO:0048451 "petal formation" evidence=RCA]
[GO:0048453 "sepal formation" evidence=RCA] GO:GO:0007126
EMBL:CP002688 EMBL:AB007649 GO:GO:0000724 eggNOG:NOG261197
KO:K10990 InterPro:IPR013894 Pfam:PF08585 IPI:IPI00891834
RefSeq:NP_001119486.1 UniGene:At.51108 ProteinModelPortal:B3H7H7
SMR:B3H7H7 PaxDb:B3H7H7 PRIDE:B3H7H7 EnsemblPlants:AT5G63540.2
GeneID:836473 KEGG:ath:AT5G63540 TAIR:At5g63540
HOGENOM:HOG000064713 OMA:EVNKPPR PhylomeDB:B3H7H7
ProtClustDB:CLSN2681683 Genevestigator:B3H7H7 Uniprot:B3H7H7
Length = 677
Score = 142 (55.0 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 40/119 (33%), Positives = 58/119 (48%)
Query: 59 DLKSIGGKSLPDPTRKFSHIQ--GPIVLQVASVRDISRSSIEEF-SGNPGSNRLLKLVLT 115
D+ GG LP + I+ GP VLQV + +I + + N G R LKL +T
Sbjct: 150 DMNLCGGGVLPPNVASMNRIELAGPFVLQVDEIVNIGCPLKGRYENANAGLKRCLKLSMT 209
Query: 116 DGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHE 174
DG + +EY I + G K+ + + V V G++ L P +V VLGG+V L E
Sbjct: 210 DGVQRVFGMEYRPIKDLQVLAPAGLKI-VVSSVQVRHGLLMLVPEIVEVLGGMVEELEE 267
>UNIPROTKB|A4IF98 [details] [associations]
symbol:RMI1 "RecQ-mediated genome instability protein 1"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] GO:GO:0005634
GO:GO:0006260 EMBL:BC134472 IPI:IPI00706140 RefSeq:NP_001077234.1
UniGene:Bt.82031 STRING:A4IF98 PRIDE:A4IF98 GeneID:614063
KEGG:bta:614063 CTD:80010 eggNOG:NOG261197 HOGENOM:HOG000154148
HOVERGEN:HBG061190 InParanoid:A4IF98 KO:K10990 OrthoDB:EOG4XKV7M
NextBio:20898919 InterPro:IPR013894 Pfam:PF08585 Uniprot:A4IF98
Length = 624
Score = 141 (54.7 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 107 NRLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLG 166
+R+L L LTDG ++I +EY IP++ D+ PGTK+ + + G++ L P V +LG
Sbjct: 132 SRMLMLQLTDGIVQIQGMEYQSIPALHSDLPPGTKILIYGNISFRLGVLLLKPENVKMLG 191
Query: 167 GVVASLHEEWQMNR 180
G V +L EE+ +
Sbjct: 192 GEVDALLEEYAQEK 205
>UNIPROTKB|Q9H9A7 [details] [associations]
symbol:RMI1 "RecQ-mediated genome instability protein 1"
species:9606 "Homo sapiens" [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] GO:GO:0005634 GO:GO:0006260
PDB:4DAY PDBsum:4DAY CTD:80010 eggNOG:NOG261197 HOVERGEN:HBG061190
KO:K10990 OrthoDB:EOG4XKV7M InterPro:IPR013894 Pfam:PF08585
EMBL:AK022950 EMBL:AL732446 EMBL:BC020606 EMBL:BC032494
EMBL:BC039999 EMBL:BC053549 EMBL:BC064937 IPI:IPI00017203
RefSeq:NP_079221.2 UniGene:Hs.726327 PDB:3MXN PDB:3NBH PDB:3NBI
PDBsum:3MXN PDBsum:3NBH PDBsum:3NBI ProteinModelPortal:Q9H9A7
SMR:Q9H9A7 DIP:DIP-33324N IntAct:Q9H9A7 STRING:Q9H9A7
PhosphoSite:Q9H9A7 DMDM:90111982 PaxDb:Q9H9A7 PRIDE:Q9H9A7
Ensembl:ENST00000325875 Ensembl:ENST00000445877 GeneID:80010
KEGG:hsa:80010 UCSC:uc004anp.4 GeneCards:GC09P086595
H-InvDB:HIX0008132 HGNC:HGNC:25764 MIM:610404 neXtProt:NX_Q9H9A7
PharmGKB:PA134939007 InParanoid:Q9H9A7 OMA:TPKPWEA PhylomeDB:Q9H9A7
GenomeRNAi:80010 NextBio:70103 Bgee:Q9H9A7 CleanEx:HS_RMI1
Genevestigator:Q9H9A7 GermOnline:ENSG00000178966 Uniprot:Q9H9A7
Length = 625
Score = 140 (54.3 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 107 NRLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLG 166
+R+L L LTDG ++I +EY IP + D+ PGTK+ + + G++ L P V VLG
Sbjct: 132 SRMLMLQLTDGIVQIQGMEYQPIPILHSDLPPGTKILIYGNISFRLGVLLLKPENVKVLG 191
Query: 167 GVVASLHEEWQMNR 180
G V +L EE+ +
Sbjct: 192 GEVDALLEEYAQEK 205
>MGI|MGI:1921636 [details] [associations]
symbol:Rmi1 "RMI1, RecQ mediated genome instability 1,
homolog (S. cerevisiae)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] MGI:MGI:1921636 GO:GO:0005634 GO:GO:0006260 CTD:80010
eggNOG:NOG261197 HOGENOM:HOG000154148 HOVERGEN:HBG061190 KO:K10990
OrthoDB:EOG4XKV7M InterPro:IPR013894 Pfam:PF08585 OMA:TPKPWEA
EMBL:AK016542 EMBL:AK032229 EMBL:AK079457 EMBL:BC037694
IPI:IPI00311251 RefSeq:NP_001161720.1 RefSeq:NP_083180.3
UniGene:Mm.85289 ProteinModelPortal:Q9D4G9 SMR:Q9D4G9 IntAct:Q9D4G9
STRING:Q9D4G9 PhosphoSite:Q9D4G9 PRIDE:Q9D4G9
Ensembl:ENSMUST00000042450 GeneID:74386 KEGG:mmu:74386
UCSC:uc007qua.2 GeneTree:ENSGT00390000000636 InParanoid:Q9D4G9
NextBio:340617 Bgee:Q9D4G9 Genevestigator:Q9D4G9
GermOnline:ENSMUSG00000035367 Uniprot:Q9D4G9
Length = 616
Score = 127 (49.8 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 54/209 (25%), Positives = 83/209 (39%)
Query: 107 NRLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLG 166
+R+L L LTDG I +EY IP++ + PGTK+ + + G++ L P V VLG
Sbjct: 132 SRMLMLQLTDGVTHIQGMEYQSIPALHSGLPPGTKILVRGCILFRLGVLLLKPENVKVLG 191
Query: 167 GVVASLHEEWQMNRKYSVFSR--SSLRPSQESXXXXXXXFEKFQIGAPSHQLAQRGRFYH 224
G V L EE N + V +R L P+ G L
Sbjct: 192 GEVDGLSEE---NAQEKVLARLIGELDPTVPVIPNNSIHNVPKVSGGLDAVLGP------ 242
Query: 225 DDSESTAKTSEPVAVETTGNTKVMPSTSQQTTGLEKNNSVTSPKV----TRVEERTEEDP 280
D E A E + E+ N V S +TG N + T+P + R +E P
Sbjct: 243 SDEELLASLDE--SEESAANNDVAMERSCFSTGTSSNTTPTNPSGFEPGCNISSRPKEKP 300
Query: 281 SSSQARPKE-VVESFPVQNQAASQKLLQK 308
+ + + F ++ ++ +QK
Sbjct: 301 PNQPTHFTDGEFDDFSLEEALLLEETVQK 329
Score = 54 (24.1 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 56 LNTDLKSIGGKSLPDPTRKF--SHIQGPIVLQVASVRDISR---SSIEEFSGNPGSNRLL 110
L TDL+ + LPD + + G LQ+ S+ D+S+ S I++ G +N L+
Sbjct: 57 LLTDLRDLEHPLLPDDILELPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTNDLV 116
>UNIPROTKB|Q5ZHV8 [details] [associations]
symbol:RMI1 "RecQ-mediated genome instability protein 1"
species:9031 "Gallus gallus" [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] GO:GO:0005634
GO:GO:0006260 CTD:80010 eggNOG:NOG261197 HOGENOM:HOG000154148
HOVERGEN:HBG061190 KO:K10990 OrthoDB:EOG4XKV7M InterPro:IPR013894
Pfam:PF08585 EMBL:AJ721026 IPI:IPI00583174 RefSeq:NP_001026783.1
UniGene:Gga.22150 STRING:Q5ZHV8 GeneID:431669 KEGG:gga:431669
InParanoid:Q5ZHV8 NextBio:20830932 Uniprot:Q5ZHV8
Length = 627
Score = 131 (51.2 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 108 RLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGG 167
R+L L LTDG +I +EY +P + ++ PGTK+ + V G++ L P V +LGG
Sbjct: 133 RMLMLQLTDGIHQIQGMEYQPVPVLHSNLPPGTKITVHGNVAYRLGVLLLKPENVKLLGG 192
Query: 168 VVASLHEEWQMNR 180
V +L EE+ R
Sbjct: 193 EVDALLEEYSQER 205
>WB|WBGene00011576 [details] [associations]
symbol:T07C12.12 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] GO:GO:0009792 KO:K10990 InterPro:IPR013894
Pfam:PF08585 GeneTree:ENSGT00390000000636 EMBL:Z73976 EMBL:Z78017
RefSeq:NP_741607.1 ProteinModelPortal:G5EF82 SMR:G5EF82
EnsemblMetazoa:T07C12.12 GeneID:179383 KEGG:cel:CELE_T07C12.12
CTD:179383 WormBase:T07C12.12 OMA:ILLKDEW NextBio:905168
Uniprot:G5EF82
Length = 615
Score = 100 (40.3 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 24/63 (38%), Positives = 31/63 (49%)
Query: 107 NRLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLG 166
+RLLKL L DG + AIE+ P + PGTK+ + + G L N VLG
Sbjct: 134 SRLLKLTLFDGETTLKAIEFWKCPQLSLHYKPGTKILIVPPCAIRKGTFLLKRNNCKVLG 193
Query: 167 GVV 169
G V
Sbjct: 194 GQV 196
Score = 55 (24.4 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 357 PDTSNDEDLAWQLQNQLDLEDSHEQSGMHDSQAENIRMS-MFSYERDD 403
PD NDED + +N+ ++E + QS ++ +++ +S + S +DD
Sbjct: 295 PDIFNDEDGDYDFENE-NIEYDNRQSTSMKAKNDSVLVSSLLSKMKDD 341
Score = 51 (23.0 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 15/70 (21%), Positives = 30/70 (42%)
Query: 40 DDKDPRKVADSTE-SELLNTDLKSIGGKSLPDPTRKFSHIQGPIVLQVASVRDISRSSIE 98
D+K V D S + ++ G + + K ++QGPIV Q+ D+ +
Sbjct: 43 DEKFANLVLDQWICSSIESSSFPVFGNHGIEETVAK-QNLQGPIVCQINGFIDVGSPYYQ 101
Query: 99 EFSGNPGSNR 108
++ G+ +
Sbjct: 102 QYCSMSGNGQ 111
>ZFIN|ZDB-GENE-040426-829 [details] [associations]
symbol:rmi1 "RMI1, RecQ mediated genome instability
1, homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
ZFIN:ZDB-GENE-040426-829 GO:GO:0005634 GO:GO:0006260 CTD:80010
eggNOG:NOG261197 HOGENOM:HOG000154148 KO:K10990 OrthoDB:EOG4XKV7M
InterPro:IPR013894 Pfam:PF08585 EMBL:BC045482 IPI:IPI00507496
RefSeq:NP_956474.1 UniGene:Dr.83721 STRING:Q7ZVM9 GeneID:393149
KEGG:dre:393149 InParanoid:Q7ZVM9 NextBio:20814221
ArrayExpress:Q7ZVM9 Uniprot:Q7ZVM9
Length = 519
Score = 118 (46.6 bits), Expect = 0.00057, P = 0.00057
Identities = 37/140 (26%), Positives = 67/140 (47%)
Query: 44 PRKVADSTESELLN---TDLKSIGGKSLPDPTRKFSHIQGPIVLQVASVRDISRSSIEEF 100
P +++++ ++ L N + S+ S P + I+G V +++ + +
Sbjct: 69 PERISEAQKTVLSNRCCVQMDSLLDVSQP-AYNQLQRIRGTDCSN-DQVSAVTQETQRPW 126
Query: 101 SGNPGSNRLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPN 160
P R+L L LTDG + +EY IP++ ++ PGTK++L + V G++ L
Sbjct: 127 EAKP--TRMLMLQLTDGVQNLEGMEYRPIPALNANLPPGTKLQLVGPIAVRLGVLLLKAE 184
Query: 161 VVTVLGGVVASLHEEWQMNR 180
+ VLGG V L E +R
Sbjct: 185 NIKVLGGEVEQLLEIHSQSR 204
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.310 0.126 0.356 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 430 390 0.00094 117 3 11 23 0.48 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 615 (65 KB)
Total size of DFA: 247 KB (2132 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 41.13u 0.15s 41.28t Elapsed: 00:00:02
Total cpu time: 41.13u 0.15s 41.28t Elapsed: 00:00:02
Start: Fri May 10 01:06:52 2013 End: Fri May 10 01:06:54 2013