BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014129
         (430 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NBI|A Chain A, Crystal Structure Of Human Rmi1 N-Terminus
          Length = 216

 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 24/147 (16%)

Query: 54  ELLNTDLKSIGGKSLPDPTRKF--SHIQGPIVLQVASVRDISR---SSIEEFSGNPGSN- 107
           + L TDL+ +    LPD   +     + G   LQ+ S+ D+S+   S I++  G   +N 
Sbjct: 58  QWLLTDLRDLEHPLLPDGILEIPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTND 117

Query: 108 ------------------RLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVP 149
                             R L L LTDG ++I   EY  IP +  D+ PGTK+ +   + 
Sbjct: 118 LVTAEAQVTPKPWEAKPSRXLXLQLTDGIVQIQGXEYQPIPILHSDLPPGTKILIYGNIS 177

Query: 150 VHSGIVCLNPNVVTVLGGVVASLHEEW 176
              G++ L P  V VLGG V +L EE+
Sbjct: 178 FRLGVLLLKPENVKVLGGEVDALLEEY 204


>pdb|2CUP|A Chain A, Solution Structure Of The Skeletal Muscle Lim-Protein 1
          Length = 101

 Score = 30.0 bits (66), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 209 IGAPSHQLAQRGRFYHDDSESTAKTSEPVAVET 241
           IGA S ++  + RF+HD     AK   P+A ET
Sbjct: 15  IGADSKEVHYKNRFWHDTCFRCAKCLHPLANET 47


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.126    0.356 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,128,852
Number of Sequences: 62578
Number of extensions: 422095
Number of successful extensions: 763
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 761
Number of HSP's gapped (non-prelim): 4
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)