BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014129
(430 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZMS6|TDRD3_CHICK Tudor domain-containing protein 3 OS=Gallus gallus GN=TDRD3 PE=2
SV=1
Length = 741
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 96/184 (52%), Gaps = 9/184 (4%)
Query: 56 LNTDLKSIGGKSLPDPTR--KFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLV 113
LNTDL++IG K LP K ++GP VLQ+ +R++S E S + R+L+L
Sbjct: 41 LNTDLRTIGKKFLPSDINGGKVEKLEGPCVLQIQKIRNVSAPKDNEESQ--AAPRMLRLQ 98
Query: 114 LTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLH 173
+TDGH TAIEY+ + I + PGTK++L + V +G + L+ + VLGG V L
Sbjct: 99 MTDGHTSCTAIEYNSMSKISLNTPPGTKIKLSGIIEVRNGFLLLDDSNTAVLGGEVEHLI 158
Query: 174 EEWQMNRKYSVFSRSSLRPSQESGGGGPPPFEKFQIGAPSHQLAQRGRFYHDDSESTAKT 233
E+W++ R + SRS++ GGPPPF F SH + T
Sbjct: 159 EKWELQRSLAKHSRSNI-----GTEGGPPPFLPFGQKCASHMQVDSRELDRRKTLQMTNT 213
Query: 234 SEPV 237
++PV
Sbjct: 214 AKPV 217
>sp|Q6P1U3|TDRD3_XENTR Tudor domain-containing protein 3 OS=Xenopus tropicalis GN=tdrd3
PE=2 SV=2
Length = 710
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 86/154 (55%), Gaps = 9/154 (5%)
Query: 56 LNTDLKSIGGKSLPDPTR--KFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLV 113
LNTDL++ G K LP+ K + GP VLQ+ +R+IS E S + R+L+L
Sbjct: 6 LNTDLRTTGKKFLPNDINGGKVEKVNGPCVLQIQKIRNISAPKDNEES--QAAPRMLRLQ 63
Query: 114 LTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLH 173
LTDGH TAIE +++ I + PGTK++L + V +G + L+ VLGG V L
Sbjct: 64 LTDGHTSCTAIELNYLSKISLNTPPGTKIKLLGTIEVKNGYLLLDDTNTVVLGGEVEHLI 123
Query: 174 EEWQMNRKYSVFSRSSLRPSQESGGGGPPPFEKF 207
E+W++ R S SRS++ GGPPPF F
Sbjct: 124 EKWELQRSLSKHSRSNIGIE-----GGPPPFVPF 152
>sp|Q91W18|TDRD3_MOUSE Tudor domain-containing protein 3 OS=Mus musculus GN=Tdrd3 PE=1
SV=4
Length = 743
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 88/154 (57%), Gaps = 9/154 (5%)
Query: 56 LNTDLKSIGGKSLPDPTR--KFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLV 113
LNTDL++IG K LP K ++GP VLQ+ VR+++ E S + R+L++
Sbjct: 41 LNTDLRTIGKKFLPSDINGGKVEKLEGPCVLQIQKVRNVAAPKDNEESQ--AAPRMLRVQ 98
Query: 114 LTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLH 173
+TDGH TA+E+S+I I + PGTKV+L V + +G + L+ + TVLGG V L
Sbjct: 99 MTDGHTSCTAVEFSYISKISLNTPPGTKVKLSGTVDIKNGFLLLSDSNTTVLGGEVEHLI 158
Query: 174 EEWQMNRKYSVFSRSSLRPSQESGGGGPPPFEKF 207
++W + R +RS++ GGPPPF F
Sbjct: 159 DKWALQRSLLKHNRSNI-----GAEGGPPPFLPF 187
>sp|Q2HJG4|TDRD3_BOVIN Tudor domain-containing protein 3 OS=Bos taurus GN=TDRD3 PE=2 SV=1
Length = 722
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 81/138 (58%), Gaps = 7/138 (5%)
Query: 77 HIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEITAIEYSHIPSIPYDV 136
+++GP VLQ+ +R+++ E S + R+L+L +TDGHI TA+E+S++ I +
Sbjct: 42 NLEGPCVLQIQKIRNVAAPKDNEESQ--AAPRMLRLQMTDGHISCTAVEFSYLSKISLNT 99
Query: 137 VPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRKYSVFSRSSLRPSQES 196
PGTKV+L V + +G + LN + TVLGG V L E+W++ R S +RS++
Sbjct: 100 PPGTKVKLSGAVDIKNGFLLLNDSNTTVLGGEVEHLIEKWELQRSLSKHNRSNI-----G 154
Query: 197 GGGGPPPFEKFQIGAPSH 214
GGPPPF F SH
Sbjct: 155 TEGGPPPFVPFGQKCVSH 172
>sp|Q6NYG6|TDRD3_DANRE Tudor domain-containing protein 3 OS=Danio rerio GN=tdrd3 PE=2 SV=1
Length = 733
Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 9/154 (5%)
Query: 56 LNTDLKSIGGKSLPDPTR--KFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLV 113
LN DL+ IG LP + ++GP VLQV +R+++ S E S + R+L++
Sbjct: 42 LNNDLRPIGKSFLPADINSGRIEKLEGPCVLQVQKIRNVAASKDHEESQ--AAPRMLRVQ 99
Query: 114 LTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLH 173
+TDGH T +E+ + I + PGTKV+L V V +GI+ L+ + + VLGG V +
Sbjct: 100 MTDGHTACTGLEFKQLSKISLNTPPGTKVKLLGVVQVKNGILLLDDSKIAVLGGEVDHMI 159
Query: 174 EEWQMNRKYSVFSRSSLRPSQESGGGGPPPFEKF 207
E+W+ R + SR ++ GGPPPF F
Sbjct: 160 EKWEFQRSLAKHSRRNI-----GAEGGPPPFVPF 188
>sp|Q9H7E2|TDRD3_HUMAN Tudor domain-containing protein 3 OS=Homo sapiens GN=TDRD3 PE=1
SV=1
Length = 651
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 63/106 (59%), Gaps = 5/106 (4%)
Query: 109 LLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGV 168
+L+L +TDGHI TA+E+S++ I + PGTKV+L V + +G + LN + TVLGG
Sbjct: 1 MLRLQMTDGHISCTAVEFSYMSKISLNTPPGTKVKLSGIVDIKNGFLLLNDSNTTVLGGE 60
Query: 169 VASLHEEWQMNRKYSVFSRSSLRPSQESGGGGPPPFEKFQIGAPSH 214
V L E+W++ R S +RS++ GGPPPF F SH
Sbjct: 61 VEHLIEKWELQRSLSKHNRSNI-----GTEGGPPPFVPFGQKCVSH 101
>sp|Q6NRP6|TDRD3_XENLA Tudor domain-containing protein 3 OS=Xenopus laevis GN=tdrd3 PE=2
SV=1
Length = 650
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 109 LLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGV 168
+L++ LTDGH TA+E +H+ I + PGTK++L + V +G + L+ VLGG
Sbjct: 1 MLRVQLTDGHTSCTAVELNHLSKISLNTPPGTKIKLLGTIEVKNGYLLLDDTNTVVLGGE 60
Query: 169 VASLHEEWQMNRKYSVFSRSSLRPSQESGGGGPPPFEKF 207
V L E+W++ R S SRS++ GGPPPF F
Sbjct: 61 VEHLIEKWELQRSLSKHSRSNIGIE-----GGPPPFVPF 94
>sp|Q66HC1|TDRD3_RAT Tudor domain-containing protein 3 OS=Rattus norvegicus GN=Tdrd3
PE=2 SV=1
Length = 651
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 109 LLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGV 168
+L++ +TDGH TA+E+S+I I + PGTKV+L V + +G + L+ + TVLGG
Sbjct: 1 MLRVQMTDGHTSCTAVEFSYISKISLNTPPGTKVKLSGTVDIKNGFLLLSDSNTTVLGGE 60
Query: 169 VASLHEEWQMNRKYSVFSRSSLRPSQESGGGGPPPFEKF 207
V L ++W + R +RS++ GGPPPF F
Sbjct: 61 VEHLIDKWALQRSLLKHNRSNI-----GAEGGPPPFLPF 94
>sp|Q9H9A7|RMI1_HUMAN RecQ-mediated genome instability protein 1 OS=Homo sapiens GN=RMI1
PE=1 SV=3
Length = 625
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 70/145 (48%), Gaps = 24/145 (16%)
Query: 56 LNTDLKSIGGKSLPDPTRKF--SHIQGPIVLQVASVRDISR---SSIEEFSGNPGSN--- 107
L TDL+ + LPD + + G LQ+ S+ D+S+ S I++ G +N
Sbjct: 57 LLTDLRDLEHPLLPDGILEIPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTNDLV 116
Query: 108 ----------------RLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVH 151
R+L L LTDG ++I +EY IP + D+ PGTK+ + +
Sbjct: 117 TAEAQVTPKPWEAKPSRMLMLQLTDGIVQIQGMEYQPIPILHSDLPPGTKILIYGNISFR 176
Query: 152 SGIVCLNPNVVTVLGGVVASLHEEW 176
G++ L P V VLGG V +L EE+
Sbjct: 177 LGVLLLKPENVKVLGGEVDALLEEY 201
>sp|A4IF98|RMI1_BOVIN RecQ-mediated genome instability protein 1 OS=Bos taurus GN=RMI1
PE=2 SV=1
Length = 624
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 24/145 (16%)
Query: 56 LNTDLKSIGGKSLPDPTRKF--SHIQGPIVLQVASVRDISR---SSIEEFSGNPGSN--- 107
L TDL+ + + LP + + G LQ+ S+ D+S+ + I++ G +N
Sbjct: 57 LLTDLRDLEHRLLPSGILETPKGELNGFFALQINSLVDVSQPAYAQIQKLRGKNTTNDLI 116
Query: 108 ----------------RLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVH 151
R+L L LTDG ++I +EY IP++ D+ PGTK+ + +
Sbjct: 117 TAETQVTPKPWEAKPSRMLMLQLTDGIVQIQGMEYQSIPALHSDLPPGTKILIYGNISFR 176
Query: 152 SGIVCLNPNVVTVLGGVVASLHEEW 176
G++ L P V +LGG V +L EE+
Sbjct: 177 LGVLLLKPENVKMLGGEVDALLEEY 201
>sp|Q9D4G9|RMI1_MOUSE RecQ-mediated genome instability protein 1 OS=Mus musculus GN=Rmi1
PE=2 SV=1
Length = 616
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 71/156 (45%), Gaps = 27/156 (17%)
Query: 56 LNTDLKSIGGKSLPDPTRKF--SHIQGPIVLQVASVRDISR---SSIEEFSGNPGSN--- 107
L TDL+ + LPD + + G LQ+ S+ D+S+ S I++ G +N
Sbjct: 57 LLTDLRDLEHPLLPDDILELPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTNDLV 116
Query: 108 ----------------RLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVH 151
R+L L LTDG I +EY IP++ + PGTK+ + +
Sbjct: 117 SAETQSTPKPWEVRPSRMLMLQLTDGVTHIQGMEYQSIPALHSGLPPGTKILVRGCILFR 176
Query: 152 SGIVCLNPNVVTVLGGVVASLHEEWQMNRKYSVFSR 187
G++ L P V VLGG V L EE N + V +R
Sbjct: 177 LGVLLLKPENVKVLGGEVDGLSEE---NAQEKVLAR 209
>sp|Q5ZHV8|RMI1_CHICK RecQ-mediated genome instability protein 1 OS=Gallus gallus GN=RMI1
PE=2 SV=1
Length = 627
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 89/204 (43%), Gaps = 32/204 (15%)
Query: 1 MEIWDTSTEAVIKALRSRGWCFGNIQEVTAIIAINSALIDDKDPRKVADSTESELLNTDL 60
+E W +ST V L C IQE ++ A I R+V + + L TDL
Sbjct: 10 VETWLSSTWHVKVPLTWLEACINWIQEENGGGNLSQAQIS----RQVFE----QWLLTDL 61
Query: 61 KSIGGKSLPDPTRKF--SHIQGPIVLQVASVRDISRSSI-------------EEFSGNPG 105
+ + LPD + G LQ+ S+ D+S+ + EE + N
Sbjct: 62 RDLEYPILPDGILDAPKGELSGFYSLQIDSLLDVSQPAYSQLQKIRGKSTVNEEVTANTQ 121
Query: 106 S---------NRLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVC 156
+ R+L L LTDG +I +EY +P + ++ PGTK+ + V G++
Sbjct: 122 AFQKPWEAKPTRMLMLQLTDGIHQIQGMEYQPVPVLHSNLPPGTKITVHGNVAYRLGVLL 181
Query: 157 LNPNVVTVLGGVVASLHEEWQMNR 180
L P V +LGG V +L EE+ R
Sbjct: 182 LKPENVKLLGGEVDALLEEYSQER 205
>sp|Q6DDH2|RMI1_XENLA RecQ-mediated genome instability protein 1 OS=Xenopus laevis
GN=rmi1 PE=2 SV=1
Length = 557
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 24/152 (15%)
Query: 56 LNTDLKSIGGKSLP-DPTRKF-SHIQGPIVLQVASVRDIS---RSSIEEFSGNPGSN--- 107
L TDL+ + LP + T + G +Q+ S+ DIS S +++ G +N
Sbjct: 57 LLTDLRDLEFPVLPANITDSLKCELNGFHAVQMDSLVDISLPAYSQLQKLKGKDSTNEQV 116
Query: 108 ----------------RLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVH 151
R+L L LTDG I A+EY I ++ ++ PGTK+ L+ +
Sbjct: 117 TCTTQQSQKPWEAKPTRMLMLQLTDGTQHIQAMEYRPIQALNANLSPGTKMVLQGTIVCR 176
Query: 152 SGIVCLNPNVVTVLGGVVASLHEEWQMNRKYS 183
G++ L P V VLGG V +L E+ + S
Sbjct: 177 LGVLLLKPENVKVLGGEVEALVAEYTQTKVLS 208
>sp|Q7ZVM9|RMI1_DANRE RecQ-mediated genome instability protein 1 OS=Danio rerio GN=rmi1
PE=2 SV=1
Length = 519
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 30/146 (20%)
Query: 56 LNTDLKSIGGKSLPDPTRKFSHIQGPIV-----LQVASVRDISRSS---IEEFSGNPGSN 107
L TDL+ + LP+ + S Q ++ +Q+ S+ D+S+ + ++ G SN
Sbjct: 56 LLTDLRDLAHPVLPE---RISEAQKTVLSNRCCVQMDSLLDVSQPAYNQLQRIRGTDCSN 112
Query: 108 -------------------RLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKV 148
R+L L LTDG + +EY IP++ ++ PGTK++L +
Sbjct: 113 DQVSAVTQETQRPWEAKPTRMLMLQLTDGVQNLEGMEYRPIPALNANLPPGTKLQLVGPI 172
Query: 149 PVHSGIVCLNPNVVTVLGGVVASLHE 174
V G++ L + VLGG V L E
Sbjct: 173 AVRLGVLLLKAENIKVLGGEVEQLLE 198
>sp|Q10160|RMI1_SCHPO RecQ-mediated genome instability protein 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rmi1 PE=3 SV=1
Length = 235
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 108 RLLKLVLTDGHIE-ITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLG 166
++ +L+L D + + +E I I GTK+ ++N V V G++ L+PN T+LG
Sbjct: 149 KMCRLILEDSNGQRFWGLERKPIKGIQLSTKLGTKLLVKN-VLVRRGVLMLDPNNTTILG 207
Query: 167 GVVASLHEEW 176
G + EEW
Sbjct: 208 GSI----EEW 213
>sp|P39998|EDC3_YEAST Enhancer of mRNA-decapping protein 3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=EDC3 PE=1 SV=1
Length = 551
Score = 32.3 bits (72), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 17/144 (11%)
Query: 211 APSHQLAQRGRFYHDDSESTAKTSEPVAVETTGNTKVMPSTSQQTTGLEKNNSVTSPKVT 270
+PS +G +D + AK + + ++ N+ +P+ ++QTT KN P T
Sbjct: 227 SPSINDKTKGTVINDKDQVLAKLGQMIISQSRSNSTSLPAANKQTTIRSKNTKQNIPMAT 286
Query: 271 RVEERTEEDPSSS--QARPKEVVESFPVQNQAASQKLLQKMSTSNQDNRHSRGR-RYRGK 327
V+ E +S ++E+F V AS L QK+ GR R R +
Sbjct: 287 PVQLLEMESITSEFFSINSAGLLENFAVN---ASFFLKQKLG----------GRARLRLQ 333
Query: 328 GKEEEPAVFTLEEWEKRKAGAKPF 351
EP V L + ++GAK
Sbjct: 334 NSNPEPLVVILAS-DSNRSGAKAL 356
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,855,615
Number of Sequences: 539616
Number of extensions: 7310643
Number of successful extensions: 25756
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 221
Number of HSP's that attempted gapping in prelim test: 24519
Number of HSP's gapped (non-prelim): 1020
length of query: 430
length of database: 191,569,459
effective HSP length: 120
effective length of query: 310
effective length of database: 126,815,539
effective search space: 39312817090
effective search space used: 39312817090
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)