Query 014129
Match_columns 430
No_of_seqs 205 out of 334
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 05:59:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014129.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014129hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nbi_A RECQ-mediated genome in 100.0 1.6E-43 5.6E-48 335.7 16.2 177 8-185 10-213 (216)
2 2b29_A Replication protein A 7 79.5 4.6 0.00016 34.7 6.9 59 78-146 23-84 (123)
3 2f3j_A RNA and export factor b 50.3 10 0.00036 33.5 3.3 12 356-367 18-29 (177)
4 1ub1_A MECP2, attachment regio 38.9 50 0.0017 29.0 5.7 19 360-378 71-93 (133)
5 3beg_B Splicing factor, argini 30.7 18 0.00062 29.3 1.5 8 362-369 30-37 (115)
6 1h2v_Z 20 kDa nuclear CAP bind 25.7 20 0.00069 30.2 0.9 10 361-370 52-61 (156)
7 4gop_B Putative uncharacterize 24.6 1.6E+02 0.0055 24.7 6.5 58 109-166 54-115 (136)
8 3beg_B Splicing factor, argini 23.3 30 0.001 27.9 1.5 13 362-374 60-72 (115)
9 2k50_A Replication factor A re 22.3 67 0.0023 26.0 3.4 42 107-148 42-83 (115)
10 2e70_A Transcription elongatio 21.9 40 0.0014 26.6 1.9 9 408-416 5-13 (71)
No 1
>3nbi_A RECQ-mediated genome instability protein 1; OB-fold, RPA-like, protein binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-43 Score=335.67 Aligned_cols=177 Identities=26% Similarity=0.361 Sum_probs=152.3
Q ss_pred HHHHHHHHHH-CCceeCchHHHHHHHH-HHhhcCCCC-ChhHHHHHHHHHHHHhhhhhcCCCCCCCcc--ccccccCCce
Q 014129 8 TEAVIKALRS-RGWCFGNIQEVTAIIA-INSALIDDK-DPRKVADSTESELLNTDLKSIGGKSLPDPT--RKFSHIQGPI 82 (430)
Q Consensus 8 ~~~l~~~L~~-~Gw~L~~~eWLk~Cv~-i~~~~~~~~-~~~~~~~~V~~qlL~sDLr~ig~~~LP~~~--~k~~~L~Gp~ 82 (430)
+.+|...|.+ .+.+|++ +||++||+ +++..+... +...+.+.|+.+||++||++++.++||+++ .+..+|+||+
T Consensus 10 ~~~v~~~l~~~~~i~v~~-~WL~~ci~~l~~~~~~~~l~~~~l~~~v~~q~L~sDL~~~~~~~LP~~i~~~~~~~L~Gp~ 88 (216)
T 3nbi_A 10 ALRAETWLLAAWHVKVPP-MWLEACINWIQEENNNVNLSQAQMNKQVFEQWLLTDLRDLEHPLLPDGILEIPKGELNGFY 88 (216)
T ss_dssp HHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHTSCHHHHCCCCSCTTTTTCSEEEEEEEE
T ss_pred HHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhHHHhCCCCCCchhhhCccceecccE
Confidence 4556666666 5777775 89999999 777766533 568999999999999999999999999998 4567899999
Q ss_pred EEEEeeeeecccchhhhhcc----------------------CCCCCceEEEEEecCceEEEEeecccCCCCCCCCCCCc
Q 014129 83 VLQVASVRDISRSSIEEFSG----------------------NPGSNRLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGT 140 (430)
Q Consensus 83 VLQI~~I~DIs~s~~~q~~~----------------------~~~~~RmLKL~LTDG~~~i~AiE~~pI~~Lsl~tpPGt 140 (430)
||||++|+|||.|+|+|+.. ..+++|||||+||||+++|+||||+||++|+++++|||
T Consensus 89 vlQV~~i~DIs~s~~sQl~~~rg~~~~nde~~~~~q~~~~~~~~~~~rmLkL~LtDG~~~i~AiE~~~i~~l~~~~~pGt 168 (216)
T 3nbi_A 89 ALQINSLVDVSQPAYSQIQKLRGKNTTNDLVTAEAQVTPKPWEAKPSRMLMLQLTDGIVQIQGMEYQPIPILHSDLPPGT 168 (216)
T ss_dssp EEEEEEEEESHHHHHHHHHHHHHC----------CCCCCCCCCCCCCCCEEEEEESSSCEEEEEECSCCTTCCTTCCTTC
T ss_pred EEEEEeEEEeccchHHHHHHHhCCCCCcccccccccccccccCCCCceEEEEEEcCCCeEEEEEEcccchhcccCCCCCc
Confidence 99999999999999986421 23568999999999999999999999999999999999
Q ss_pred eEEEeCCceEeeeEEEEeCCcEEEecccchhHHHHHhhhhhhhcc
Q 014129 141 KVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRKYSVF 185 (430)
Q Consensus 141 KIlLkg~v~vrrGvLLL~p~Nv~VLGG~Ve~L~e~W~~~r~l~~~ 185 (430)
||+|++++.|+||||||+|+||+||||+|++|+++|+++|.|++.
T Consensus 169 Kill~~~~~~~~G~llL~~~n~~vLGG~V~~L~~~w~~~r~l~r~ 213 (216)
T 3nbi_A 169 KILIYGNISFRLGVLLLKPENVKVLGGEVDALLEEYAQEKVLARL 213 (216)
T ss_dssp EEEEEEEEEEETTEEEECGGGEEEEECCCHHHHHHHTTC------
T ss_pred eEEEeCCcEEEeeEEEecCCCEEEECcCcHHHHHHHHHHHHHHHH
Confidence 999998899999999999999999999999999999999988754
No 2
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=79.47 E-value=4.6 Score=34.72 Aligned_cols=59 Identities=15% Similarity=0.315 Sum_probs=42.7
Q ss_pred cCCceEEEEeeeeecccchhhhhccCCCCCceEEEEEecCceEEEE-eecccCCCCCC--CCCCCceEEEeC
Q 014129 78 IQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEITA-IEYSHIPSIPY--DVVPGTKVRLEN 146 (430)
Q Consensus 78 L~Gp~VLQI~~I~DIs~s~~~q~~~~~~~~RmLKL~LTDG~~~i~A-iE~~pI~~Lsl--~tpPGtKIlLkg 146 (430)
...| ||||..++-|... +.. .=+||.|+||...+.| |--..+..+-. .+..||=|.|+.
T Consensus 23 ~~~P-vlQVl~~K~i~~~--------~~~-~RyRl~lSDG~~~~~~~mLatqln~~v~~g~l~~~sIirl~~ 84 (123)
T 2b29_A 23 NIKP-ILQVINIRPITTG--------NSP-PRYRLLMSDGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHR 84 (123)
T ss_dssp SCCC-EEEEEEEEEECCT--------TSC-CEEEEEEECSSEEEEEEEECGGGHHHHHTTSSCTTCEEEEEE
T ss_pred CCCc-eEEEEeeeecCCC--------CCC-ceEEEEEECcchheeeehhHHHHHHHHhcCCccCCCEEEEEE
Confidence 3445 8999999988542 112 3489999999999998 87655555422 378888888875
No 3
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=50.35 E-value=10 Score=33.53 Aligned_cols=12 Identities=25% Similarity=0.116 Sum_probs=6.7
Q ss_pred CCCCCchHHHHH
Q 014129 356 LPDTSNDEDLAW 367 (430)
Q Consensus 356 ~~d~~~de~la~ 367 (430)
-.|-|=||-|+.
T Consensus 18 ~ld~sLDdii~~ 29 (177)
T 2f3j_A 18 KMDMSLDDIIKL 29 (177)
T ss_dssp SSSCCHHHHHHH
T ss_pred hhccCHHHHHhh
Confidence 355566666643
No 4
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=38.91 E-value=50 Score=29.04 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=14.1
Q ss_pred CchHHHHHHhhh----cCCcccc
Q 014129 360 SNDEDLAWQLQN----QLDLEDS 378 (430)
Q Consensus 360 ~~de~la~qlq~----qldle~~ 378 (430)
-+.-||++-|.. -+|+++|
T Consensus 71 RSk~Ev~ryL~~~~~~~~~~e~F 93 (133)
T 1ub1_A 71 RSKVELIAYFEKVGDTSLDPNDF 93 (133)
T ss_dssp SSHHHHHHHHTTSCCCSCCGGGC
T ss_pred eCHHHHHHHHHHCCccCCCHhHC
Confidence 678899999963 2666766
No 5
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=30.72 E-value=18 Score=29.27 Aligned_cols=8 Identities=25% Similarity=0.153 Sum_probs=3.1
Q ss_pred hHHHHHHh
Q 014129 362 DEDLAWQL 369 (430)
Q Consensus 362 de~la~ql 369 (430)
+++|...+
T Consensus 30 ~~~l~~~F 37 (115)
T 3beg_B 30 WQDLKDHM 37 (115)
T ss_dssp TTHHHHHH
T ss_pred HHHHHHHH
Confidence 33443333
No 6
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=25.74 E-value=20 Score=30.24 Aligned_cols=10 Identities=10% Similarity=0.156 Sum_probs=4.0
Q ss_pred chHHHHHHhh
Q 014129 361 NDEDLAWQLQ 370 (430)
Q Consensus 361 ~de~la~qlq 370 (430)
.+++|...+.
T Consensus 52 t~~~l~~~F~ 61 (156)
T 1h2v_Z 52 TEEQIYELFS 61 (156)
T ss_dssp CHHHHHHHHG
T ss_pred CHHHHHHHHH
Confidence 3344444443
No 7
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=24.64 E-value=1.6e+02 Score=24.72 Aligned_cols=58 Identities=10% Similarity=0.087 Sum_probs=44.4
Q ss_pred eEEEEEecCceEEEEeecccCCC----CCCCCCCCceEEEeCCceEeeeEEEEeCCcEEEec
Q 014129 109 LLKLVLTDGHIEITAIEYSHIPS----IPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLG 166 (430)
Q Consensus 109 mLKL~LTDG~~~i~AiE~~pI~~----Lsl~tpPGtKIlLkg~v~vrrGvLLL~p~Nv~VLG 166 (430)
-+.++|.||.-.|.|.-+..-.. -...+.+|+=|.+.|.+..-+|-.-|.-..+..+-
T Consensus 54 ~~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~f~g~~qi~~~~ir~v~ 115 (136)
T 4gop_B 54 NVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKSFQNRRSISSGHMRPVI 115 (136)
T ss_dssp EEEEEEECSSCEEEEEEECC--------CCSCCTTCEEEEEEEEEEETTEEEEEESEEEECS
T ss_pred eEEEEEECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEEEEeCCEEEEEEEEEEECC
Confidence 47899999998888877654332 12348899999999999888998888888887764
No 8
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=23.34 E-value=30 Score=27.92 Aligned_cols=13 Identities=15% Similarity=0.041 Sum_probs=5.2
Q ss_pred hHHHHHHhhhcCC
Q 014129 362 DEDLAWQLQNQLD 374 (430)
Q Consensus 362 de~la~qlq~qld 374 (430)
+++-|..--+.||
T Consensus 60 ~~~~a~~Ai~~l~ 72 (115)
T 3beg_B 60 RKEDMTYAVRKLD 72 (115)
T ss_dssp SHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhC
Confidence 3444443333444
No 9
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=22.34 E-value=67 Score=26.04 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=31.3
Q ss_pred CceEEEEEecCceEEEEeecccCCCCCCCCCCCceEEEeCCc
Q 014129 107 NRLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKV 148 (430)
Q Consensus 107 ~RmLKL~LTDG~~~i~AiE~~pI~~Lsl~tpPGtKIlLkg~v 148 (430)
..++.|.|.|+.-.|.+.=+..-..+.-.+.+|.-|.|+|.+
T Consensus 42 ~~~~~~~l~D~TG~I~~t~w~~~~~~~~~l~~G~vv~i~g~~ 83 (115)
T 2k50_A 42 GKLANVIIADDTGELRAVFWTENIKLLKKFREGDVIRIKDVN 83 (115)
T ss_dssp CEEEEEEEEETTEEEEEEEETTGGGGGGTCCTTSEEEEEEEE
T ss_pred EEEEEEEEEeCCCeEEEEEeCchhhhhhcCCCCCEEEEEeeE
Confidence 579999999999877777665432222358899999999854
No 10
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.91 E-value=40 Score=26.64 Aligned_cols=9 Identities=44% Similarity=0.867 Sum_probs=3.5
Q ss_pred CcCCCCCCC
Q 014129 408 TENRGRGRG 416 (430)
Q Consensus 408 grgrgRGRG 416 (430)
+.|+++||+
T Consensus 5 ~gG~~~gr~ 13 (71)
T 2e70_A 5 SSGMSRGRG 13 (71)
T ss_dssp CSCCCCCSS
T ss_pred cCCcCCCCC
Confidence 333333433
Done!