Query 014129
Match_columns 430
No_of_seqs 205 out of 334
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 05:59:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014129.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014129hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2b3ga1 b.40.4.3 (A:3-114) Rep 76.7 1.3 9.2E-05 35.8 4.5 57 80-146 20-79 (112)
2 d1iyjb3 b.40.4.3 (B:2599-2731) 26.3 8 0.00058 31.9 0.5 68 78-146 14-87 (133)
3 d1nnxa_ b.40.10.1 (A:) Hypothe 25.0 54 0.0039 25.6 5.4 37 112-149 54-90 (106)
4 d1oyia_ a.4.5.19 (A:) dsRNA-bi 17.3 22 0.0016 25.0 1.2 35 366-405 21-55 (62)
5 d1avsa_ a.39.1.5 (A:) Troponin 13.3 1.3E+02 0.0092 21.0 4.8 26 7-33 32-57 (81)
6 d1ufza_ a.5.9.1 (A:) HBS1-like 11.7 96 0.007 23.3 3.7 28 25-52 31-59 (83)
7 d1gm5a2 b.40.4.9 (A:106-285) R 10.6 53 0.0039 26.6 2.0 44 106-150 79-124 (180)
8 d1f60a1 b.43.3.1 (A:241-334) E 10.2 89 0.0065 23.2 3.1 42 119-162 45-90 (94)
9 d1x49a1 d.50.1.1 (A:8-92) dsRN 8.3 1.1E+02 0.0077 22.1 2.7 20 299-318 64-83 (85)
10 d1qnaa2 d.129.1.1 (A:116-198) 8.1 1.8E+02 0.013 20.9 4.0 41 135-178 31-72 (83)
No 1
>d2b3ga1 b.40.4.3 (A:3-114) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Probab=76.66 E-value=1.3 Score=35.83 Aligned_cols=57 Identities=18% Similarity=0.384 Sum_probs=41.8
Q ss_pred CceEEEEeeeeecccchhhhhccCCCCCceEEEEEecCceEEE-EeecccCCCCCC--CCCCCceEEEeC
Q 014129 80 GPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEIT-AIEYSHIPSIPY--DVVPGTKVRLEN 146 (430)
Q Consensus 80 Gp~VLQI~~I~DIs~s~~~q~~~~~~~~RmLKL~LTDG~~~i~-AiE~~pI~~Lsl--~tpPGtKIlLkg 146 (430)
.| ||||..++=|.... .+.| +||.|+||..++. ||--..+..+-. .+..||=|.|+.
T Consensus 20 ~P-VlQVl~~k~i~~~~--------~~~R-yR~~lSDG~~~~~~amLatqln~~v~~g~l~~~sii~l~~ 79 (112)
T d2b3ga1 20 KP-ILQVINIRPITTGN--------SPPR-YRLLMSDGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHR 79 (112)
T ss_dssp CC-EEEEEEEEEEC-----------CCCE-EEEEEECSSEEEEEEEECGGGHHHHHTTSSCTTCEEEEEE
T ss_pred CC-EEEEEeeEeccCCC--------Ccce-EEEEEECcchhhhhhhhhhhhhhhhhcCCccCCCEEEEeE
Confidence 46 79999999885321 2234 9999999999997 887777655532 388899999875
No 2
>d1iyjb3 b.40.4.3 (B:2599-2731) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=26.31 E-value=8 Score=31.91 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=37.9
Q ss_pred cCCceEEEEeeeeeccc----chhhhhccCCCCCceEEEEEecCceEEEEeecccCCCCCC--CCCCCceEEEeC
Q 014129 78 IQGPIVLQVASVRDISR----SSIEEFSGNPGSNRLLKLVLTDGHIEITAIEYSHIPSIPY--DVVPGTKVRLEN 146 (430)
Q Consensus 78 L~Gp~VLQI~~I~DIs~----s~~~q~~~~~~~~RmLKL~LTDG~~~i~AiE~~pI~~Lsl--~tpPGtKIlLkg 146 (430)
-..++||=|..|..-+. +..... .....+-+..|+||||=-.|.|.=-.++..+-. -+..|.||.|.|
T Consensus 14 ~s~~mVLcVs~I~~~~~~~~~~~~~~~-~~~~~~~~~~lelTDGWYsi~a~lD~~L~~~l~~grl~vGqKL~i~G 87 (133)
T d1iyjb3 14 AAKTLVLCVSDIISLSTNVSETSGSKA-SSEDSNKVDTIELTDGWYAVKAQLDPPLLALVKSGRLTVGQKIITQG 87 (133)
T ss_dssp TCCSEEEEEEECCCCC------------------CCCCEEEECSSCEEEECCCHHHHHHHHHTCSCTTCEEEESC
T ss_pred ccCcEEEEEEEeeccCCcccccccccc-ccccccccceEEEecCCEEEEEEcCHHHHHHHHcCCccccceEEEEC
Confidence 34578887777743221 111100 011123445799999999999864334433211 289999999998
No 3
>d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli [TaxId: 562]}
Probab=24.99 E-value=54 Score=25.59 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=26.7
Q ss_pred EEEecCceEEEEeecccCCCCCCCCCCCceEEEeCCce
Q 014129 112 LVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVP 149 (430)
Q Consensus 112 L~LTDG~~~i~AiE~~pI~~Lsl~tpPGtKIlLkg~v~ 149 (430)
..++||.-+| -+|..+--.....+-|++||.|.|.|.
T Consensus 54 Y~F~D~TG~I-~VeId~~~w~g~~v~p~~kV~i~GevD 90 (106)
T d1nnxa_ 54 YVFKDASGTI-NVDIDHKRWNGVTVTPKDTVEIQGEVD 90 (106)
T ss_dssp EEEEETTEEE-EEECCGGGSTTCCCCTTSCEEEEEEEE
T ss_pred EEEECCCCcE-EEEEChhhcCCcccCCCCEEEEEEEEc
Confidence 5678998755 456555444455799999999998554
No 4
>d1oyia_ a.4.5.19 (A:) dsRNA-binding protein E3 (E3L) {Vaccinia virus [TaxId: 10245]}
Probab=17.33 E-value=22 Score=25.03 Aligned_cols=35 Identities=31% Similarity=0.385 Sum_probs=24.4
Q ss_pred HHHhhhcCCcccccccCCCcchhHHHhhhhcccccCCCCC
Q 014129 366 AWQLQNQLDLEDSHEQSGMHDSQAENIRMSMFSYERDDRV 405 (430)
Q Consensus 366 a~qlq~qldle~~~~~~~~~~~~ae~~r~~~f~~~~~~~~ 405 (430)
|-||-+|||||+- +.- -+--++..++.-|..+|-+
T Consensus 21 a~qltrqlnmekr-evn----kalydlqrsamvy~s~d~p 55 (62)
T d1oyia_ 21 AAQLTRQLNMEKR-EVN----KALYDLQRSAMVYSSDDIP 55 (62)
T ss_dssp HHHHHHHSSSCHH-HHH----HHHHHHHHHTSSEECSSSS
T ss_pred HHHHHHHHhHHHH-HHH----HHHHHHHHhhheecCCCCC
Confidence 6799999999987 332 3455677777777665443
No 5
>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=13.33 E-value=1.3e+02 Score=21.03 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHCCceeCchHHHHHHHH
Q 014129 7 STEAVIKALRSRGWCFGNIQEVTAIIA 33 (430)
Q Consensus 7 ~~~~l~~~L~~~Gw~L~~~eWLk~Cv~ 33 (430)
+.++|...|+..|+++++ .+++.++.
T Consensus 32 ~~~el~~~l~~~g~~~s~-~e~~~~~~ 57 (81)
T d1avsa_ 32 STKELGTVMRMLGQNPTK-EELDAIIE 57 (81)
T ss_dssp CHHHHHHHHHHTTCCCCH-HHHHHHHH
T ss_pred chhHHHHHHHHcCCCCCH-HHHHHHHH
Confidence 467899999999999997 56676666
No 6
>d1ufza_ a.5.9.1 (A:) HBS1-like protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.75 E-value=96 Score=23.32 Aligned_cols=28 Identities=7% Similarity=0.062 Sum_probs=20.1
Q ss_pred hHHHHHHHH-HHhhcCCCCChhHHHHHHH
Q 014129 25 IQEVTAIIA-INSALIDDKDPRKVADSTE 52 (430)
Q Consensus 25 ~eWLk~Cv~-i~~~~~~~~~~~~~~~~V~ 52 (430)
..-|.+|++ |.+-++++.....+++.|+
T Consensus 31 ~aRL~SCldqmR~VvGDsvpe~~lv~avl 59 (83)
T d1ufza_ 31 QARLYSCLDHMREVLGDAVPDDILTEAIL 59 (83)
T ss_dssp HHHHHHHHHHHHHHTTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccCCHHHHHHHHH
Confidence 456899999 9999988654455555444
No 7
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]}
Probab=10.57 E-value=53 Score=26.59 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=31.3
Q ss_pred CCceEEEEEecCceEEEEeecccCCCCCCC--CCCCceEEEeCCceE
Q 014129 106 SNRLLKLVLTDGHIEITAIEYSHIPSIPYD--VVPGTKVRLENKVPV 150 (430)
Q Consensus 106 ~~RmLKL~LTDG~~~i~AiE~~pI~~Lsl~--tpPGtKIlLkg~v~v 150 (430)
.++|+++.+.||...+..+=|.. +.+... ..+|.+++|.|.+..
T Consensus 79 ~~~~~~~~v~D~~g~i~l~fFn~-~~~~~~~k~~~G~~v~v~Gkvk~ 124 (180)
T d1gm5a2 79 NMNILTAVLSDGLVHVPLKWFNQ-DYLQTYLKQLTGKEVFVTGTVKS 124 (180)
T ss_dssp SCEEEEEEECCSSCCEEEEECSC-CTTHHHHHTTCSSCEEEEEEECS
T ss_pred ccceeEEEEEeccceEEEEEeCc-HHHHHHHhhhcCceEEEEEEEee
Confidence 35799999999998777765643 233322 357999999996543
No 8
>d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.16 E-value=89 Score=23.19 Aligned_cols=42 Identities=26% Similarity=0.393 Sum_probs=28.9
Q ss_pred eEEEEeecccCCCCCCCCCCCceEEE--eCC--ceEeeeEEEEeCCcE
Q 014129 119 IEITAIEYSHIPSIPYDVVPGTKVRL--ENK--VPVHSGIVCLNPNVV 162 (430)
Q Consensus 119 ~~i~AiE~~pI~~Lsl~tpPGtKIlL--kg~--v~vrrGvLLL~p~Nv 162 (430)
.+|..||...-+. ....+|.-+-| ++- -.|++|++|..|+|-
T Consensus 45 ~~VksI~~~~~~~--~~a~aG~~v~l~l~~i~~~~i~rG~vl~~~~~~ 90 (94)
T d1f60a1 45 TEVKSVEMHHEQL--EQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKND 90 (94)
T ss_dssp EEEEEEEETTEEC--SCBCTTCEEEEEESSCCTTTSCTTCEEEETTSS
T ss_pred EEEEEEEEcCcCc--CEecCCCeEEEEEeCccHHhcCCCCEEECCCCC
Confidence 7889999876543 13667766554 441 248999999999873
No 9
>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.25 E-value=1.1e+02 Score=22.14 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCCCccCcC
Q 014129 299 QAASQKLLQKMSTSNQDNRH 318 (430)
Q Consensus 299 ~aaaqkllq~~~~~~~~~~~ 318 (430)
|.||++.|..+...+..+.+
T Consensus 64 q~AA~~aL~~L~~~~~~~s~ 83 (85)
T d1x49a1 64 NAAAKLAVDILDNENKVDCH 83 (85)
T ss_dssp HHHHHHHHHHHTTTCCCCSS
T ss_pred HHHHHHHHHHHHHcCccccc
Confidence 68999999999877666554
No 10
>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=8.12 E-value=1.8e+02 Score=20.91 Aligned_cols=41 Identities=10% Similarity=0.243 Sum_probs=31.6
Q ss_pred CCCCCceEEEeCCceEeeeEEEEeCCcEEEeccc-chhHHHHHhh
Q 014129 135 DVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGV-VASLHEEWQM 178 (430)
Q Consensus 135 ~tpPGtKIlLkg~v~vrrGvLLL~p~Nv~VLGG~-Ve~L~e~W~~ 178 (430)
..-||..+++.++- + -+|+.....+.+.|.+ ++++.+.|+.
T Consensus 31 e~fpgl~~R~~~pk-~--~~lIF~SGkivitGaks~~~~~~a~~~ 72 (83)
T d1qnaa2 31 ELFPGLIYRMKVPK-I--VLLIFVSGKIVITGAKMRDETYKAFEN 72 (83)
T ss_dssp TTCSSEEEEETTTT-E--EEEECTTSEEEEEEESSHHHHHHHHHH
T ss_pred hhCCeEEEEECCCC-e--EEEEEcCCEEEEECCCCHHHHHHHHHH
Confidence 46788888887742 2 3788889999999995 7778888863
Done!