BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014130
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 158 bits (400), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 75/150 (50%), Positives = 98/150 (65%), Gaps = 2/150 (1%)
Query: 32 GFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFS 91
GFRF+PTDEEL+ YL RK F I E+D+YK +PW L + + ++EWYFFS
Sbjct: 23 GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG--EKEWYFFS 80
Query: 92 PLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVM 151
P D+KY NG+R NR GYWKATG D+ I E Q +G+KK LVF+ G+AP G +TNW+M
Sbjct: 81 PRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIM 140
Query: 152 HEYRLVEEEFEQLGPGLASYVLCRVFHKNN 181
HEYRL+E L +VLCR++ K +
Sbjct: 141 HEYRLIEPSRRNGSTKLDDWVLCRIYKKQS 170
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 158 bits (399), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 75/150 (50%), Positives = 98/150 (65%), Gaps = 2/150 (1%)
Query: 32 GFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFS 91
GFRF+PTDEEL+ YL RK F I E+D+YK +PW L + + ++EWYFFS
Sbjct: 20 GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG--EKEWYFFS 77
Query: 92 PLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVM 151
P D+KY NG+R NR GYWKATG D+ I E Q +G+KK LVF+ G+AP G +TNW+M
Sbjct: 78 PRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIM 137
Query: 152 HEYRLVEEEFEQLGPGLASYVLCRVFHKNN 181
HEYRL+E L +VLCR++ K +
Sbjct: 138 HEYRLIEPSRRNGSTKLDDWVLCRIYKKQS 167
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 101/155 (65%), Gaps = 7/155 (4%)
Query: 32 GFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFS 91
GFRFHPTD+ELV +YL RK + I EVD+YK +PWDL + + R EWYFF+
Sbjct: 18 GFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAR--EWYFFT 75
Query: 92 PLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVM 151
P D+KY NG+R NRA GYWKATG D+ + + +G+KK LVF++G+AP G +T+W+M
Sbjct: 76 PRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIM 135
Query: 152 HEYRLVEEEFEQLGPGLAS-----YVLCRVFHKNN 181
HEYRL + G S +VLCR+++K N
Sbjct: 136 HEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKN 170
>pdb|3OML|A Chain A, Structure Of Full-Length Peroxisomal Multifunctional
Enzyme Type 2 From Drosophila Melanogaster
Length = 613
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 57/149 (38%), Gaps = 32/149 (21%)
Query: 58 FNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFS---------------PLDKKYVNGAR 102
A G VDI N L D S +KT +Q+W + P KK G
Sbjct: 97 IKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRI 156
Query: 103 MNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWV-----------M 151
+ ++ G + G+ + LIG+ T+ A +G R N + M
Sbjct: 157 IMTSSNSGIYGNFGQVNYTAAKMGLIGLANTV------AIEGARNNVLCNVIVPTAASRM 210
Query: 152 HEYRLVEEEFEQLGPGLASYVLCRVFHKN 180
E L + F +L P L + V+ + H++
Sbjct: 211 TEGILPDILFNELKPKLIAPVVAYLCHES 239
>pdb|2WZI|A Chain A, Btgh84 D243n In Complex With 5f-Oxazoline
pdb|2WZI|B Chain B, Btgh84 D243n In Complex With 5f-Oxazoline
Length = 737
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 128 IGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHKNNIGPPNG 187
+G++ VF + +G ++E+F Q+ P + V+C + + PNG
Sbjct: 253 LGVRSFAVFFDNISGEGTNPQKQAELLNYIDEKFAQVKPDINQLVMCPTEYNKSWSNPNG 312
Query: 188 N 188
N
Sbjct: 313 N 313
>pdb|2WZH|A Chain A, Btgh84 D242n In Complex With Meumb-Derived Oxazoline
pdb|4AIU|A Chain A, A Complex Structure Of Btgh84
Length = 737
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 28/61 (45%)
Query: 128 IGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHKNNIGPPNG 187
+G++ VF + + +G ++E+F Q+ P + V+C + + PNG
Sbjct: 253 LGVRSFAVFFNDISGEGTNPQKQAELLNYIDEKFAQVKPDINQLVMCPTEYNKSWSNPNG 312
Query: 188 N 188
N
Sbjct: 313 N 313
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,542,520
Number of Sequences: 62578
Number of extensions: 406208
Number of successful extensions: 877
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 862
Number of HSP's gapped (non-prelim): 14
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)