Query 014130
Match_columns 430
No_of_seqs 200 out of 970
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 06:00:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.6E-54 5.5E-59 399.2 14.5 157 23-181 9-170 (174)
2 1ut7_A No apical meristem prot 100.0 1.8E-54 6.2E-59 397.7 13.4 158 23-182 11-168 (171)
3 2v66_B Nuclear distribution pr 93.3 0.16 5.6E-06 43.6 6.5 55 374-428 1-59 (111)
4 3he5_A Synzip1; heterodimeric 91.6 0.32 1.1E-05 35.1 5.1 46 377-422 4-49 (49)
5 2v71_A Nuclear distribution pr 86.2 1.5 5.1E-05 40.8 6.9 55 374-428 54-112 (189)
6 2w83_C C-JUN-amino-terminal ki 86.1 0.83 2.8E-05 36.9 4.4 41 379-419 33-73 (77)
7 1go4_E MAD1 (mitotic arrest de 83.3 3 0.0001 35.2 6.8 53 376-429 19-93 (100)
8 1gd2_E Transcription factor PA 81.6 1.8 6.2E-05 34.2 4.6 42 376-424 29-70 (70)
9 2oqq_A Transcription factor HY 76.5 4.5 0.00016 29.1 4.9 38 377-428 4-41 (42)
10 3a7p_A Autophagy protein 16; c 75.0 4.7 0.00016 36.4 5.8 32 392-423 98-129 (152)
11 2wt7_B Transcription factor MA 74.7 5.2 0.00018 33.1 5.6 40 377-416 49-88 (90)
12 3hnw_A Uncharacterized protein 73.7 6.3 0.00022 34.6 6.3 51 377-427 76-126 (138)
13 2jee_A YIIU; FTSZ, septum, coi 71.9 9.8 0.00033 30.9 6.4 42 384-425 21-62 (81)
14 3ol1_A Vimentin; structural ge 68.1 12 0.00042 31.8 6.7 43 370-412 14-56 (119)
15 3i00_A HIP-I, huntingtin-inter 62.7 11 0.00037 32.6 5.3 46 376-424 15-60 (120)
16 3hnw_A Uncharacterized protein 60.5 15 0.00051 32.2 5.9 51 374-424 87-137 (138)
17 1nkp_B MAX protein, MYC proto- 59.5 7.6 0.00026 30.7 3.5 33 374-406 45-77 (83)
18 3s4r_A Vimentin; alpha-helix, 53.5 20 0.0007 29.3 5.2 25 374-398 54-78 (93)
19 1dh3_A Transcription factor CR 48.3 22 0.00076 26.4 4.3 29 399-427 17-45 (55)
20 2ke4_A CDC42-interacting prote 48.2 34 0.0012 28.4 5.9 57 368-424 9-82 (98)
21 3s9g_A Protein hexim1; cyclin 46.6 40 0.0014 28.5 5.9 47 381-427 42-88 (104)
22 3oja_A Leucine-rich immune mol 46.4 30 0.001 34.8 6.4 50 375-427 409-458 (487)
23 3oja_A Leucine-rich immune mol 45.9 27 0.00091 35.2 5.9 56 374-429 412-467 (487)
24 1ytz_T Troponin T; muscle, THI 44.1 64 0.0022 27.3 7.0 54 360-416 36-89 (107)
25 1nlw_A MAD protein, MAX dimeri 38.6 31 0.0011 27.4 4.0 27 375-401 46-72 (80)
26 2wt7_A Proto-oncogene protein 38.5 26 0.00088 26.5 3.3 23 377-399 24-46 (63)
27 2dgc_A Protein (GCN4); basic d 38.3 26 0.00088 26.8 3.3 28 400-427 26-53 (63)
28 1hlo_A Protein (transcription 38.1 20 0.00069 28.1 2.8 26 402-427 55-80 (80)
29 3na7_A HP0958; flagellar bioge 37.6 54 0.0018 30.8 6.2 47 381-427 16-62 (256)
30 2wt7_A Proto-oncogene protein 36.3 74 0.0025 23.9 5.7 22 404-425 23-44 (63)
31 1am9_A Srebp-1A, protein (ster 36.3 29 0.001 27.5 3.5 26 375-400 49-74 (82)
32 2yy0_A C-MYC-binding protein; 34.9 37 0.0013 25.2 3.6 31 390-427 19-49 (53)
33 2eqb_B RAB guanine nucleotide 34.2 76 0.0026 26.5 5.8 48 377-424 13-60 (97)
34 2v66_B Nuclear distribution pr 34.0 41 0.0014 28.7 4.2 32 398-429 43-74 (111)
35 3s4r_A Vimentin; alpha-helix, 34.0 83 0.0029 25.6 6.0 51 372-423 19-75 (93)
36 1q08_A Zn(II)-responsive regul 33.5 79 0.0027 24.7 5.7 51 375-427 6-62 (99)
37 1nkp_A C-MYC, MYC proto-oncoge 32.9 56 0.0019 26.3 4.7 26 373-398 49-74 (88)
38 3o0z_A RHO-associated protein 32.0 72 0.0025 29.1 5.7 25 401-425 87-111 (168)
39 3ghg_A Fibrinogen alpha chain; 31.5 66 0.0023 34.3 6.1 42 347-388 21-76 (562)
40 2akf_A Coronin-1A; coiled coil 31.1 46 0.0016 22.3 3.1 24 395-418 4-27 (32)
41 3oja_B Anopheles plasmodium-re 30.8 83 0.0028 32.2 6.8 34 394-427 541-574 (597)
42 1ci6_A Transcription factor AT 30.3 64 0.0022 24.4 4.4 23 406-428 39-61 (63)
43 1yhn_B RILP, RAB interacting l 30.2 77 0.0026 24.6 4.7 31 383-413 3-33 (65)
44 3ghg_A Fibrinogen alpha chain; 30.2 84 0.0029 33.5 6.6 48 378-425 101-152 (562)
45 1jnm_A Proto-oncogene C-JUN; B 29.9 54 0.0019 24.5 3.9 37 377-427 23-59 (62)
46 3a5t_A Transcription factor MA 29.3 7.9 0.00027 32.9 -1.0 43 377-426 59-101 (107)
47 1am9_A Srebp-1A, protein (ster 29.3 41 0.0014 26.6 3.3 27 402-428 48-74 (82)
48 2efr_A General control protein 28.5 1.1E+02 0.0038 27.3 6.3 50 377-426 106-155 (155)
49 3trt_A Vimentin; cytoskeleton, 27.8 1E+02 0.0034 23.6 5.2 28 397-424 49-76 (77)
50 1jnm_A Proto-oncogene C-JUN; B 27.6 50 0.0017 24.7 3.3 26 402-427 20-45 (62)
51 3vmx_A Voltage-gated hydrogen 27.5 38 0.0013 25.0 2.5 23 406-428 20-42 (48)
52 1hlo_A Protein (transcription 27.4 46 0.0016 26.0 3.2 25 374-398 55-79 (80)
53 1gu4_A CAAT/enhancer binding p 27.3 48 0.0017 26.5 3.3 22 406-427 52-73 (78)
54 3swk_A Vimentin; cytoskeleton, 25.7 75 0.0026 25.5 4.3 30 378-407 2-31 (86)
55 3he5_A Synzip1; heterodimeric 25.5 47 0.0016 23.9 2.6 21 407-427 6-26 (49)
56 1hjb_A Ccaat/enhancer binding 25.1 55 0.0019 26.7 3.3 23 405-427 51-73 (87)
57 1zbd_B Rabphilin-3A; G protein 25.1 67 0.0023 27.8 4.2 38 391-428 14-51 (134)
58 1ic2_A Tropomyosin alpha chain 24.6 92 0.0031 24.4 4.5 48 376-423 6-60 (81)
59 1t2k_D Cyclic-AMP-dependent tr 24.5 1.4E+02 0.0047 22.1 5.3 37 377-427 23-59 (61)
60 3trt_A Vimentin; cytoskeleton, 24.3 1.7E+02 0.0057 22.3 5.9 24 393-416 52-75 (77)
61 2oxj_A Hybrid alpha/beta pepti 23.9 53 0.0018 22.6 2.5 22 406-427 3-24 (34)
62 1nkp_B MAX protein, MYC proto- 23.9 64 0.0022 25.2 3.5 18 410-427 60-77 (83)
63 3qh9_A Liprin-beta-2; coiled-c 23.6 1.7E+02 0.0059 23.7 5.9 52 374-425 24-75 (81)
64 2yy0_A C-MYC-binding protein; 23.2 71 0.0024 23.6 3.3 29 384-419 20-48 (53)
65 1go4_E MAD1 (mitotic arrest de 23.2 44 0.0015 28.1 2.5 35 374-415 10-44 (100)
66 1t2k_D Cyclic-AMP-dependent tr 23.0 1E+02 0.0035 22.9 4.3 25 403-427 21-45 (61)
67 3tnu_B Keratin, type II cytosk 22.5 69 0.0024 27.2 3.7 19 377-395 37-55 (129)
68 3m9b_A Proteasome-associated A 22.1 1E+02 0.0034 29.8 5.0 43 375-417 53-95 (251)
69 3iv1_A Tumor susceptibility ge 21.6 2.6E+02 0.0089 22.4 6.6 48 380-427 15-69 (78)
70 3cvf_A Homer-3, homer protein 21.6 2.1E+02 0.0073 22.9 6.1 50 375-427 26-75 (79)
71 2v4h_A NF-kappa-B essential mo 21.1 1.8E+02 0.0062 24.8 5.9 17 409-425 88-104 (110)
72 2w83_C C-JUN-amino-terminal ki 21.1 2.3E+02 0.0078 22.8 6.1 42 382-427 8-53 (77)
73 4ath_A MITF, microphthalmia-as 20.8 1.2E+02 0.0042 24.6 4.6 29 375-403 38-67 (83)
74 1dh3_A Transcription factor CR 20.8 60 0.002 24.0 2.5 24 376-399 22-45 (55)
75 3oja_B Anopheles plasmodium-re 20.8 1.2E+02 0.0042 30.9 5.8 46 380-425 506-551 (597)
76 1j1d_C Troponin I, TNI; THIN f 20.4 1.8E+02 0.0061 25.5 5.9 56 360-418 52-107 (133)
77 2oxj_A Hybrid alpha/beta pepti 20.3 1.3E+02 0.0046 20.6 3.9 29 378-406 3-31 (34)
78 3a7o_A Autophagy protein 16; c 20.1 1.5E+02 0.0051 23.6 4.8 27 393-419 49-75 (75)
79 3cve_A Homer protein homolog 1 20.1 2.2E+02 0.0077 22.4 5.8 49 375-426 20-68 (72)
80 1j1d_B Troponin T, TNT; THIN f 20.1 81 0.0028 26.6 3.5 54 360-416 36-89 (106)
81 2v71_A Nuclear distribution pr 20.0 1.9E+02 0.0064 26.7 6.3 37 393-429 91-127 (189)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.6e-54 Score=399.21 Aligned_cols=157 Identities=48% Similarity=0.943 Sum_probs=136.4
Q ss_pred ccCCCCCCCCceeCCChHHHHHHHHhhhhcCCCCCCCceeeccCCCCCCccccccccccCCCCceeeccCCcccccCCCc
Q 014130 23 KKNTAALAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFSPLDKKYVNGAR 102 (430)
Q Consensus 23 A~~~~~LPPGfRF~PTDEELV~~YL~rKi~G~plp~~~I~evDVY~~ePWdLp~~~~~k~~d~eWYFFs~r~kK~~~G~R 102 (430)
+...+.|||||||||||||||.|||++|+.|.+++..+|+++|||++|||+||+.+. .++.+|||||++++||++|.|
T Consensus 9 ~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~--~g~~ewYFFs~r~~ky~~g~R 86 (174)
T 3ulx_A 9 AEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERAL--FGAREWYFFTPRDRKYPNGSR 86 (174)
T ss_dssp CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCS--SCSSEEEEEEECCC-----CC
T ss_pred cccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhc--cCCceEEEEeccccccCCCCC
Confidence 455689999999999999999999999999999999999999999999999998764 356799999999999999999
Q ss_pred ccccccccEEeecCcceeeccCCeEeeeEEEEEeecCCCCCCCccCeEEEEEEeCcchhhc----cCC-CCCCeeEEEEe
Q 014130 103 MNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQ----LGP-GLASYVLCRVF 177 (430)
Q Consensus 103 ~nRatggG~WKatGk~k~I~~~g~vVG~KKtLvFy~grap~G~KT~WvMhEYrL~~~~~~~----~g~-~~de~VLCRIf 177 (430)
.+|++++||||++|++++|..+|.+||+||+|+||.|++++|.||+|+||||+|.+..... .+. ..++|||||||
T Consensus 87 ~nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf 166 (174)
T 3ulx_A 87 PNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLY 166 (174)
T ss_dssp SCEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEE
T ss_pred ceeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEE
Confidence 9999999999999999999988999999999999999999999999999999999864321 121 26899999999
Q ss_pred eeCC
Q 014130 178 HKNN 181 (430)
Q Consensus 178 ~K~~ 181 (430)
+|++
T Consensus 167 ~K~~ 170 (174)
T 3ulx_A 167 NKKN 170 (174)
T ss_dssp ESCC
T ss_pred EcCC
Confidence 9885
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.8e-54 Score=397.75 Aligned_cols=158 Identities=49% Similarity=0.902 Sum_probs=132.5
Q ss_pred ccCCCCCCCCceeCCChHHHHHHHHhhhhcCCCCCCCceeeccCCCCCCccccccccccCCCCceeeccCCcccccCCCc
Q 014130 23 KKNTAALAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFSPLDKKYVNGAR 102 (430)
Q Consensus 23 A~~~~~LPPGfRF~PTDEELV~~YL~rKi~G~plp~~~I~evDVY~~ePWdLp~~~~~k~~d~eWYFFs~r~kK~~~G~R 102 (430)
+..+..|||||||||||||||.|||++|+.|.+++..+|+++|||++|||+||+.+ ..++.+||||+++++||++|.|
T Consensus 11 ~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~--~~g~~ewyFFs~r~~k~~~g~R 88 (171)
T 1ut7_A 11 PLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKA--LFGEKEWYFFSPRDRKYPNGSR 88 (171)
T ss_dssp -CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHS--SSCSSEEEEEEECCC-------
T ss_pred cccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchh--hcCCccEEEEeccccccCCCCc
Confidence 34568999999999999999999999999999999999999999999999999875 3457899999999999999999
Q ss_pred ccccccccEEeecCcceeeccCCeEeeeEEEEEeecCCCCCCCccCeEEEEEEeCcchhhccCCCCCCeeEEEEeeeCCC
Q 014130 103 MNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHKNNI 182 (430)
Q Consensus 103 ~nRatggG~WKatGk~k~I~~~g~vVG~KKtLvFy~grap~G~KT~WvMhEYrL~~~~~~~~g~~~de~VLCRIf~K~~~ 182 (430)
++|++++||||++|++++|..++.+||+||+|+||.|++++|.||+|+||||+|............++|||||||+|++.
T Consensus 89 ~~R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 89 PNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp CCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred ccccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence 99999999999999999999889999999999999999999999999999999997642211123789999999999864
No 3
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=93.33 E-value=0.16 Score=43.59 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHhhhHHH----HHHHHhhhhhhhhhhcHHHHHhhh
Q 014130 374 CAKLIKELKNQVREVVVERATLKLDLMSAQA----MINILHSRIDFLTRENEDLKRKNK 428 (430)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 428 (430)
|.|-+.+|+..+..+..|.|.+|--.++++. .||.||--|+.|...++.|+..+|
T Consensus 1 ~Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iR 59 (111)
T 2v66_B 1 AEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR 59 (111)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999986 588899999999988888887766
No 4
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=91.56 E-value=0.32 Score=35.10 Aligned_cols=46 Identities=28% Similarity=0.398 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHH
Q 014130 377 LIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENED 422 (430)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (430)
++..|++|+..+.-|.||||..-.--..+|..|+-.|.-|++++|+
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkkiee 49 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIEE 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhcC
Confidence 5778999999999999999999998889998888888888777653
No 5
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=86.23 E-value=1.5 Score=40.81 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHhhhHHHH----HHHHhhhhhhhhhhcHHHHHhhh
Q 014130 374 CAKLIKELKNQVREVVVERATLKLDLMSAQAM----INILHSRIDFLTRENEDLKRKNK 428 (430)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 428 (430)
+.|-+.+|+..+..+..|.+.+|.....++.. ||.||..|..|+..++.|+..+|
T Consensus 54 ~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 54 AEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999999999988888777 99999988888888888877665
No 6
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=86.13 E-value=0.83 Score=36.87 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=32.9
Q ss_pred HHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhh
Q 014130 379 KELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRE 419 (430)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (430)
+||=..|.+++.|+|.|+.|+-+-+..+.-++.||..|..|
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777999999999999999999999999999999988754
No 7
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=83.27 E-value=3 Score=35.21 Aligned_cols=53 Identities=23% Similarity=0.203 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHhhh----------------------HHHHHHHHhhhhhhhhhhcHHHHHhhhc
Q 014130 376 KLIKELKNQVREVVVERATLKLDLMS----------------------AQAMINILHSRIDFLTRENEDLKRKNKA 429 (430)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (430)
+-|+.|+.|..++-=|.+.|+.++++ +.|. .-.+.-|+.|..|+|.||..|+.
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~-~~~~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVAR-QRLREDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHH-HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555556666655 2222 23577889999999999999875
No 8
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=81.56 E-value=1.8 Score=34.18 Aligned_cols=42 Identities=21% Similarity=0.194 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHH
Q 014130 376 KLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLK 424 (430)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (430)
+.|.+||.+|.++..+.+. +.+.+..|...|+.|..||+.||
T Consensus 29 ~~i~~LE~~v~~le~~~~~-------l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSS-------TTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHcC
Confidence 4899999998877655544 45667788888888888888765
No 9
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=76.45 E-value=4.5 Score=29.10 Aligned_cols=38 Identities=29% Similarity=0.433 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHHHhhh
Q 014130 377 LIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLKRKNK 428 (430)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (430)
|+++||.+..++ +.-++-|.+||-.|.+||--||..++
T Consensus 4 Yl~eLE~r~k~l--------------e~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 4 YLSELENRVKDL--------------ENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 677787776653 45578899999999999999998764
No 10
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=74.96 E-value=4.7 Score=36.36 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=29.1
Q ss_pred hhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHH
Q 014130 392 RATLKLDLMSAQAMINILHSRIDFLTRENEDL 423 (430)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (430)
-|.++-|+...+.-.|.++.++..|.+||.+|
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999876
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=74.71 E-value=5.2 Score=33.11 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhh
Q 014130 377 LIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFL 416 (430)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (430)
.+.+||.|+..+..|.|.|+.|.....-.++.++.+...|
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999988888888888887766
No 12
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=73.67 E-value=6.3 Score=34.63 Aligned_cols=51 Identities=20% Similarity=0.166 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHHHhh
Q 014130 377 LIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLKRKN 427 (430)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (430)
-+..|+.++.+..-|-..||-|+.+++.-+.-+...+..|.+++.+|.+.+
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777888888887777777777777777777776654
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=71.91 E-value=9.8 Score=30.95 Aligned_cols=42 Identities=24% Similarity=0.203 Sum_probs=32.4
Q ss_pred HHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHHH
Q 014130 384 QVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLKR 425 (430)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (430)
.|.-+-+|-|.||.+-=....-.+-+++..+.|++||+.||.
T Consensus 21 tI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~ 62 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444588888888777777788888888999999988874
No 14
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=68.11 E-value=12 Score=31.77 Aligned_cols=43 Identities=16% Similarity=0.239 Sum_probs=34.1
Q ss_pred CCccHHHHHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhh
Q 014130 370 MPPDCAKLIKELKNQVREVVVERATLKLDLMSAQAMINILHSR 412 (430)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (430)
+-+-|.+.|.+|+.+|..+.+|+..|.+|+=.++..+.-++.+
T Consensus 14 ~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~K 56 (119)
T 3ol1_A 14 LGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 56 (119)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3478999999999999999999999988876666555444433
No 15
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=62.65 E-value=11 Score=32.59 Aligned_cols=46 Identities=15% Similarity=0.262 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHH
Q 014130 376 KLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLK 424 (430)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (430)
-.|..|+.||..+.-|-|.|| +.||.+|.-|+.||-.|..|++.-+
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~---~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMK---TESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999998888885 5689999999999888877766644
No 16
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=60.50 E-value=15 Score=32.24 Aligned_cols=51 Identities=22% Similarity=0.201 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHH
Q 014130 374 CAKLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLK 424 (430)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (430)
..|-|.+|++|+-...++-|.++.|.-..+.-|+-||-+|--|..++++.+
T Consensus 87 ~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~~~ 137 (138)
T 3hnw_A 87 KDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELNDSK 137 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355666777777777777777777777777777777777777777776654
No 17
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=59.49 E-value=7.6 Score=30.72 Aligned_cols=33 Identities=9% Similarity=0.085 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHhhhHHHHH
Q 014130 374 CAKLIKELKNQVREVVVERATLKLDLMSAQAMI 406 (430)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (430)
...||..|+.++..+.-|.+.|+.+....++-|
T Consensus 45 Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 45 ATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999888888777777666655444433
No 18
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=53.48 E-value=20 Score=29.31 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHH
Q 014130 374 CAKLIKELKNQVREVVVERATLKLD 398 (430)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (430)
|...|.+|..+|..+..|+..+.+|
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e 78 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVE 78 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554444333
No 19
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=48.33 E-value=22 Score=26.42 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHhhhhhhhhhhcHHHHHhh
Q 014130 399 LMSAQAMINILHSRIDFLTRENEDLKRKN 427 (430)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (430)
=++-++.|+-|+.+|..|..||..|+..+
T Consensus 17 R~RKk~~~~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 17 RRKKKEYVKSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777788888888888888877654
No 20
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=48.23 E-value=34 Score=28.38 Aligned_cols=57 Identities=26% Similarity=0.348 Sum_probs=40.5
Q ss_pred CCCCcc-----HHHHHHHHHHHHHhhhhhhhhhHH------------HhhhHHHHHHHHhhhhhhhhhhcHHHH
Q 014130 368 SQMPPD-----CAKLIKELKNQVREVVVERATLKL------------DLMSAQAMINILHSRIDFLTRENEDLK 424 (430)
Q Consensus 368 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (430)
+++||. ....|.+|+++|.+-+-.||-|.- +-++.+.-|+.+-.+||.|+.+.-.+.
T Consensus 9 s~LPpeqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q 82 (98)
T 2ke4_A 9 SHLPPEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYE 82 (98)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566885 445899999999988888876532 345667777777778888877654443
No 21
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=46.59 E-value=40 Score=28.46 Aligned_cols=47 Identities=26% Similarity=0.297 Sum_probs=29.9
Q ss_pred HHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHHHhh
Q 014130 381 LKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLKRKN 427 (430)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (430)
|++.+.++.-|-..|+...-..-+=|..|+.-|+.|+.||..|++-+
T Consensus 42 LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 42 LEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333334444433445677888888999999999888755
No 22
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=46.37 E-value=30 Score=34.78 Aligned_cols=50 Identities=22% Similarity=0.285 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHHHhh
Q 014130 375 AKLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLKRKN 427 (430)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (430)
..+|+...+...+|-.|.|- |..++.....+.|.+|+.|.+||+.|++.+
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (487)
T 3oja_A 409 LQLLRAIVKRYEEMYVEQQS---VQNNAIRDWDMYQHKETQLAEENARLKKLN 458 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhhcchhhhhhhhhHHHHHHHHhhhhhhhh
Confidence 34444444444444444332 333355556667777777777777777654
No 23
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=45.87 E-value=27 Score=35.20 Aligned_cols=56 Identities=13% Similarity=-0.031 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHHHhhhc
Q 014130 374 CAKLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLKRKNKA 429 (430)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (430)
.-++|+..++...++.-|||.++.+|=..+.-|+-|.-+-+.|.++++++...+..
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 34588888888888999999999999999999999999888899999888776543
No 24
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=44.07 E-value=64 Score=27.26 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=44.2
Q ss_pred CCCCCCCCCCCCccHHHHHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhh
Q 014130 360 PFEANDFDSQMPPDCAKLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFL 416 (430)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (430)
|+++++++ ......++.+|-..|.++--||=.|...+.+..--||-|..||..|
T Consensus 36 pL~id~l~---~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 36 PLNIDHLN---EDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp CCCCSSSC---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCC---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 44566654 2355569999999999988888889999999999999999999888
No 25
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=38.59 E-value=31 Score=27.38 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 014130 375 AKLIKELKNQVREVVVERATLKLDLMS 401 (430)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (430)
..||..|+.+..++..|.+.|+.|...
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~ 72 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRH 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999888887777776665443
No 26
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=38.46 E-value=26 Score=26.53 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHh
Q 014130 377 LIKELKNQVREVVVERATLKLDL 399 (430)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~ 399 (430)
.|.+|+.++..+.-|.+.|+.++
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778887777777666655543
No 27
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=38.35 E-value=26 Score=26.76 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=19.7
Q ss_pred hhHHHHHHHHhhhhhhhhhhcHHHHHhh
Q 014130 400 MSAQAMINILHSRIDFLTRENEDLKRKN 427 (430)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (430)
++-++-|+-|+++|..|..+|..|+.-+
T Consensus 26 ~RK~~~~~~Le~~v~~L~~eN~~L~~ev 53 (63)
T 2dgc_A 26 ARKLQRMKQLEDKVEELLSKNYHLENEV 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777776544
No 28
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=38.09 E-value=20 Score=28.10 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=17.8
Q ss_pred HHHHHHHHhhhhhhhhhhcHHHHHhh
Q 014130 402 AQAMINILHSRIDFLTRENEDLKRKN 427 (430)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (430)
|-.-|..||.++..|..+++.|++.|
T Consensus 55 Ai~YI~~L~~~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 55 ATEYIQYMRRKNHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45567777777777777777777643
No 29
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=37.57 E-value=54 Score=30.79 Aligned_cols=47 Identities=19% Similarity=0.055 Sum_probs=29.4
Q ss_pred HHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHHHhh
Q 014130 381 LKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLKRKN 427 (430)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (430)
+..+|.++.-++..+..|+=..+.-+.-|+.++..++.+.+|+++.+
T Consensus 16 lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~ 62 (256)
T 3na7_A 16 LDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQV 62 (256)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466666666666666666666666666666666666666666554
No 30
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=36.35 E-value=74 Score=23.91 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=10.8
Q ss_pred HHHHHHhhhhhhhhhhcHHHHH
Q 014130 404 AMINILHSRIDFLTRENEDLKR 425 (430)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~ 425 (430)
.-|.-|+.+++.|..+|++|+.
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ 44 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQT 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555554444
No 31
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=36.28 E-value=29 Score=27.47 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHhh
Q 014130 375 AKLIKELKNQVREVVVERATLKLDLM 400 (430)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (430)
..||..|+.++..+.-|.+.|+.++-
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666665555443
No 32
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=34.91 E-value=37 Score=25.16 Aligned_cols=31 Identities=29% Similarity=0.405 Sum_probs=18.8
Q ss_pred hhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHHHhh
Q 014130 390 VERATLKLDLMSAQAMINILHSRIDFLTRENEDLKRKN 427 (430)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (430)
.+=|.||.|+ .-|+.||..|.+++++|++.+
T Consensus 19 ~d~eaLk~E~-------~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLEL-------AEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 4555666654 445666666666666666554
No 33
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.16 E-value=76 Score=26.52 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHH
Q 014130 377 LIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLK 424 (430)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (430)
-|..|+.++..+.-|-..|+.++-..++---..+++...+++|.|||-
T Consensus 13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 13 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777777777777777777777777788888888888874
No 34
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=34.00 E-value=41 Score=28.73 Aligned_cols=32 Identities=34% Similarity=0.528 Sum_probs=22.0
Q ss_pred HhhhHHHHHHHHhhhhhhhhhhcHHHHHhhhc
Q 014130 398 DLMSAQAMINILHSRIDFLTRENEDLKRKNKA 429 (430)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (430)
|+=..+.+---|+-+|-.|.+.|.||-|..|.
T Consensus 43 El~~lr~~~~~l~~~iReLEq~NDDLER~~R~ 74 (111)
T 2v66_B 43 DLSQTRAIKEQLHKYVRELEQANDDLERAKRA 74 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 33334444455667888899999999887764
No 35
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=33.98 E-value=83 Score=25.61 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=29.6
Q ss_pred ccHHHHHHHHHHHHHhhhhhhhhhHH------HhhhHHHHHHHHhhhhhhhhhhcHHH
Q 014130 372 PDCAKLIKELKNQVREVVVERATLKL------DLMSAQAMINILHSRIDFLTRENEDL 423 (430)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (430)
+||+..+..||.+...+..+-+.++- .-| -++.|+-|+..||.+..++-.|
T Consensus 19 AsyIdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~-ye~~i~~Lr~~i~~~~~ek~~l 75 (93)
T 3s4r_A 19 ANLIDKVRFLEQQNKILLAELEQLKGQGKSRLGDL-YEEEMRELRRQVDQLTNDKARV 75 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777888777666554433332 222 2556666666666666555433
No 36
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=33.48 E-value=79 Score=24.73 Aligned_cols=51 Identities=18% Similarity=0.297 Sum_probs=28.9
Q ss_pred HHHHHHHHH------HHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHHHhh
Q 014130 375 AKLIKELKN------QVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLKRKN 427 (430)
Q Consensus 375 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (430)
++||..|++ ||+++---+..- +.-....+..+|+.++..|+++.++|++..
T Consensus 6 L~~I~~lr~lGfsL~eIk~~l~~~~~~--~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~ 62 (99)
T 1q08_A 6 LKFIRHARQLGFSLESIRELLSIRIDP--EHHTCQESKGIVQERLQEVEARIAELQSMQ 62 (99)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHCG--GGCBHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHhCC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777776 555543211100 000234566777777777777777776653
No 37
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=32.90 E-value=56 Score=26.25 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=18.4
Q ss_pred cHHHHHHHHHHHHHhhhhhhhhhHHH
Q 014130 373 DCAKLIKELKNQVREVVVERATLKLD 398 (430)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (430)
....||..|+.+...+..|.+.|+.+
T Consensus 49 ~A~~YI~~L~~~~~~l~~~~~~L~~~ 74 (88)
T 1nkp_A 49 KATAYILSVQAEEQKLISEEDLLRKR 74 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999888877776655443
No 38
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=31.98 E-value=72 Score=29.06 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=18.6
Q ss_pred hHHHHHHHHhhhhhhhhhhcHHHHH
Q 014130 401 SAQAMINILHSRIDFLTRENEDLKR 425 (430)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (430)
++..+|.-||.||..|..|.+.+|-
T Consensus 87 q~se~~~elq~ri~~L~~El~~~k~ 111 (168)
T 3o0z_A 87 HDSEMIGDLQARITSLQEEVKHLKH 111 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455778888888888888777764
No 39
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=31.52 E-value=66 Score=34.25 Aligned_cols=42 Identities=29% Similarity=0.604 Sum_probs=24.1
Q ss_pred CCcccCCCCCCCCCCCC-CCCCCCCCccHH-------------HHHHHHHHHHHhh
Q 014130 347 IEPRETSCVPTAAPFEA-NDFDSQMPPDCA-------------KLIKELKNQVREV 388 (430)
Q Consensus 347 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------------~~~~~~~~~~~~~ 388 (430)
.|+-++.|...--|||+ .++.---|-+|. +-|++|++++.++
T Consensus 21 vE~~qs~Cke~~WPfCaDeDwGvkCPSGCrLQglLdkqErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 21 VERHQSACKDSDWPFCSDEDWNYKCPSGCRMKGLIDEVNQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp ------CCCCCCCCBCCSSSBTTEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred ccccccccccCCCCcccccccCCCCCcccchhhhHHhhcCcHHHHHHHHHHHHHHH
Confidence 34556666644558999 677766777774 4577777755444
No 40
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=31.11 E-value=46 Score=22.29 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=18.0
Q ss_pred hHHHhhhHHHHHHHHhhhhhhhhh
Q 014130 395 LKLDLMSAQAMINILHSRIDFLTR 418 (430)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~ 418 (430)
|.-|+-.-++++.-||.|+|.|..
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455568999999999998853
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.77 E-value=83 Score=32.16 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=19.9
Q ss_pred hhHHHhhhHHHHHHHHhhhhhhhhhhcHHHHHhh
Q 014130 394 TLKLDLMSAQAMINILHSRIDFLTRENEDLKRKN 427 (430)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (430)
.++.|+..-+..+..-+.++..|.+|+++++..+
T Consensus 541 ~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 541 DLEQENIALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3334555555555666666666777766665543
No 42
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=30.26 E-value=64 Score=24.39 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=15.8
Q ss_pred HHHHhhhhhhhhhhcHHHHHhhh
Q 014130 406 INILHSRIDFLTRENEDLKRKNK 428 (430)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~ 428 (430)
...|..+|..|.+|+.-||.++.
T Consensus 39 N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 39 NEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456677777788887777654
No 43
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=30.22 E-value=77 Score=24.61 Aligned_cols=31 Identities=13% Similarity=0.326 Sum_probs=28.2
Q ss_pred HHHHhhhhhhhhhHHHhhhHHHHHHHHhhhh
Q 014130 383 NQVREVVVERATLKLDLMSAQAMINILHSRI 413 (430)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (430)
.|+++|--||-.||..++-.|-.+..+|+-+
T Consensus 3 ~Elr~iLqERNELKa~vf~lqeEL~yY~~e~ 33 (65)
T 1yhn_B 3 EEFEQILQERNELKAKVFLLKEELAYFQREL 33 (65)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4788899999999999999999999999876
No 44
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.17 E-value=84 Score=33.49 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhh--hh--hhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHHH
Q 014130 378 IKELKNQVREVV--VE--RATLKLDLMSAQAMINILHSRIDFLTRENEDLKR 425 (430)
Q Consensus 378 ~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (430)
..++++-+.+++ +| .+.||+++=.--..|.+||+.|+.+..++..|.-
T Consensus 101 ~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 101 ANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555455554 22 2456777666668899999999998888776653
No 45
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=29.89 E-value=54 Score=24.52 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHHHhh
Q 014130 377 LIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLKRKN 427 (430)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (430)
.|.+|+.++.++.-|.+.|+ ++|..|..|+..||.++
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~--------------~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELA--------------STANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 67888888877776665544 45556666666665544
No 46
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=29.28 E-value=7.9 Score=32.93 Aligned_cols=43 Identities=26% Similarity=0.237 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHHHh
Q 014130 377 LIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLKRK 426 (430)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (430)
-+.+||+|+..+..|.|.|+.|... |..-+|.|..+.|.|.+.
T Consensus 59 ~~~~LE~e~~~L~~e~e~L~~En~~-------l~~E~~~lk~k~e~L~~~ 101 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVEKLASENAS-------MKLELDALRSKYEALQNF 101 (107)
T ss_dssp HHHHHHHHHTTTSSTTTTTTSTTSH-------HHHTTTSSSSCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777544 344455555555555543
No 47
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=29.27 E-value=41 Score=26.61 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=23.0
Q ss_pred HHHHHHHHhhhhhhhhhhcHHHHHhhh
Q 014130 402 AQAMINILHSRIDFLTRENEDLKRKNK 428 (430)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (430)
|-..|..||.++..|..|++.|+..+.
T Consensus 48 Ai~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 48 AIDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556789999999999999999998653
No 48
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=28.52 E-value=1.1e+02 Score=27.33 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHHHh
Q 014130 377 LIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLKRK 426 (430)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (430)
-|++|+.++..---....+..||=++-.-++-+++-.+-|++|.-.||++
T Consensus 106 ~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~~~ 155 (155)
T 2efr_A 106 SIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLKKL 155 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhhcC
Confidence 45555555444444444455555566666777788889999988888763
No 49
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=27.76 E-value=1e+02 Score=23.64 Aligned_cols=28 Identities=25% Similarity=0.178 Sum_probs=20.1
Q ss_pred HHhhhHHHHHHHHhhhhhhhhhhcHHHH
Q 014130 397 LDLMSAQAMINILHSRIDFLTRENEDLK 424 (430)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (430)
-++=.++.+|+-|..+|..|.-|.+-||
T Consensus 49 ~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 49 DALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444567777888888888887777765
No 50
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.57 E-value=50 Score=24.71 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=20.5
Q ss_pred HHHHHHHHhhhhhhhhhhcHHHHHhh
Q 014130 402 AQAMINILHSRIDFLTRENEDLKRKN 427 (430)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (430)
-..-|.-|+.+++.|..+|++|+..+
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v 45 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTA 45 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888888888888888888765
No 51
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=27.48 E-value=38 Score=25.01 Aligned_cols=23 Identities=26% Similarity=0.124 Sum_probs=20.7
Q ss_pred HHHHhhhhhhhhhhcHHHHHhhh
Q 014130 406 INILHSRIDFLTRENEDLKRKNK 428 (430)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~ 428 (430)
|.-||.+-+.+.+|||.|+++.|
T Consensus 20 v~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 20 IQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHHH
Confidence 66789999999999999999886
No 52
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=27.43 E-value=46 Score=26.02 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHH
Q 014130 374 CAKLIKELKNQVREVVVERATLKLD 398 (430)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (430)
...||..|+.++.++..|.+.|+.+
T Consensus 55 Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 55 ATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4569999999999998888887754
No 53
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=27.26 E-value=48 Score=26.45 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=13.7
Q ss_pred HHHHhhhhhhhhhhcHHHHHhh
Q 014130 406 INILHSRIDFLTRENEDLKRKN 427 (430)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~ 427 (430)
=..|+.+|+.|.+|+..||.++
T Consensus 52 N~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 52 NERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666554
No 54
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=25.74 E-value=75 Score=25.53 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhhhhhhhhHHHhhhHHHHHH
Q 014130 378 IKELKNQVREVVVERATLKLDLMSAQAMIN 407 (430)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (430)
|.+|+.+|..+..|+..+.+|+=.++..+.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~e 31 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIM 31 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 456777777777776666666544444443
No 55
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=25.50 E-value=47 Score=23.87 Aligned_cols=21 Identities=43% Similarity=0.566 Sum_probs=13.6
Q ss_pred HHHhhhhhhhhhhcHHHHHhh
Q 014130 407 NILHSRIDFLTRENEDLKRKN 427 (430)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~ 427 (430)
.-|+..|..|..|||-||+++
T Consensus 6 aqlenevaslenenetlkkkn 26 (49)
T 3he5_A 6 AQLENEVASLENENETLKKKN 26 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHhc
Confidence 345566666777777777654
No 56
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=25.12 E-value=55 Score=26.69 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=14.3
Q ss_pred HHHHHhhhhhhhhhhcHHHHHhh
Q 014130 405 MINILHSRIDFLTRENEDLKRKN 427 (430)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~ 427 (430)
.-..|+.+|+.|.+|+..|+.++
T Consensus 51 EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 51 ENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666667777776666554
No 57
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=25.07 E-value=67 Score=27.84 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=30.0
Q ss_pred hhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHHHhhh
Q 014130 391 ERATLKLDLMSAQAMINILHSRIDFLTRENEDLKRKNK 428 (430)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (430)
||+.+.-=|++++.+=..-+.||-.|..+.+++|+.+.
T Consensus 14 E~~~Il~Vl~Rd~~l~~~E~~ri~kL~~~l~~~k~~~~ 51 (134)
T 1zbd_B 14 EKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVA 51 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 56666666777888888888999999999999988754
No 58
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=24.63 E-value=92 Score=24.42 Aligned_cols=48 Identities=10% Similarity=0.108 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhh-------hhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHH
Q 014130 376 KLIKELKNQVREVV-------VERATLKLDLMSAQAMINILHSRIDFLTRENEDL 423 (430)
Q Consensus 376 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (430)
|.|..|+.+..+.. ..-+......+.++.-|..|+.||-.|..+.+..
T Consensus 6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ 60 (81)
T 1ic2_A 6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKY 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555443332 2223334456777888888888887776665544
No 59
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=24.51 E-value=1.4e+02 Score=22.13 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHHHhh
Q 014130 377 LIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLKRKN 427 (430)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (430)
.|.+|+.++..++-|. ..|++.|..|..|+..||.++
T Consensus 23 ~~~~Le~~~~~L~~~n--------------~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLN--------------GQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHh
Confidence 5666776666655443 345666777777777777654
No 60
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=24.32 E-value=1.7e+02 Score=22.34 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=11.4
Q ss_pred hhhHHHhhhHHHHHHHHhhhhhhh
Q 014130 393 ATLKLDLMSAQAMINILHSRIDFL 416 (430)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~ 416 (430)
...|-|++...-.|.-|+..|+.|
T Consensus 52 ~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 52 RQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444455555555544443
No 61
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=23.90 E-value=53 Score=22.59 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=14.1
Q ss_pred HHHHhhhhhhhhhhcHHHHHhh
Q 014130 406 INILHSRIDFLTRENEDLKRKN 427 (430)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~ 427 (430)
+|-|+-+|..|-.+|++|..-|
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV 24 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEV 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHH
Confidence 3566677777666666665544
No 62
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.88 E-value=64 Score=25.23 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=8.8
Q ss_pred hhhhhhhhhhcHHHHHhh
Q 014130 410 HSRIDFLTRENEDLKRKN 427 (430)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~ 427 (430)
+..++.|.++|+.|+..+
T Consensus 60 ~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 60 QQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555554443
No 63
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=23.56 E-value=1.7e+02 Score=23.65 Aligned_cols=52 Identities=23% Similarity=0.300 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHHH
Q 014130 374 CAKLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLKR 425 (430)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (430)
...=|++|.-.|-+|-=||---...+-+..+.|..||-++..=+.|.+-|.-
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~ 75 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHS 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3455788888888888899888889999999999999887766666665543
No 64
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.17 E-value=71 Score=23.64 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=14.8
Q ss_pred HHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhh
Q 014130 384 QVREVVVERATLKLDLMSAQAMINILHSRIDFLTRE 419 (430)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (430)
++..+..|.+.||.+ ++-|+.+++.|.++
T Consensus 20 d~eaLk~E~~eLk~k-------~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 20 EIELLRLELAEMKEK-------YEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 555555666666544 34444444444443
No 65
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=23.15 E-value=44 Score=28.06 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhh
Q 014130 374 CAKLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDF 415 (430)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (430)
.-.=++.|..+|..+-.|++.|+.+ |..|.+++.-
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~-------~~~LE~~Le~ 44 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEE-------KRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 4456778888888888888877654 5666666643
No 66
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=22.98 E-value=1e+02 Score=22.86 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=18.6
Q ss_pred HHHHHHHhhhhhhhhhhcHHHHHhh
Q 014130 403 QAMINILHSRIDFLTRENEDLKRKN 427 (430)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (430)
..-|+-|+.+++.|..+|.+|+..|
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i 45 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEV 45 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888887654
No 67
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.54 E-value=69 Score=27.18 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhhhhhhhhh
Q 014130 377 LIKELKNQVREVVVERATL 395 (430)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~ 395 (430)
-|++|...|..+.+|-+.+
T Consensus 37 Ei~elrr~iq~L~~el~~l 55 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNV 55 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333
No 68
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=22.06 E-value=1e+02 Score=29.80 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhh
Q 014130 375 AKLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLT 417 (430)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (430)
..-+.+|+.++..++.--+.|+.++..|+..|..|++.|+.|.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457788888888877766677777766666666666665553
No 69
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.59 E-value=2.6e+02 Score=22.38 Aligned_cols=48 Identities=25% Similarity=0.358 Sum_probs=31.6
Q ss_pred HHHHHHHhhhhhhhhhHH---Hh----hhHHHHHHHHhhhhhhhhhhcHHHHHhh
Q 014130 380 ELKNQVREVVVERATLKL---DL----MSAQAMINILHSRIDFLTRENEDLKRKN 427 (430)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (430)
.|+.++.+...|=++||. |+ .+-+.||+-|+...+.|.+..+-|+++.
T Consensus 15 rl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~ 69 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKD 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666543 33 3456788888888777777777777654
No 70
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=21.56 E-value=2.1e+02 Score=22.89 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHHHhh
Q 014130 375 AKLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLKRKN 427 (430)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (430)
.+-|..||..+..-..+++.+|.|+=+ .+.+|-.+|+.|+-=..-|-++.
T Consensus 26 e~~v~~le~~Le~s~~~q~~~~~Elk~---l~e~Ld~KI~eL~elRqgLakL~ 75 (79)
T 3cvf_A 26 EHQLRAMERSLEEARAERERARAEVGR---AAQLLDVSLFELSELREGLARLA 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHhc
Confidence 347888999999999999999999754 57889999999876555555543
No 71
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=21.15 E-value=1.8e+02 Score=24.77 Aligned_cols=17 Identities=29% Similarity=0.557 Sum_probs=7.7
Q ss_pred HhhhhhhhhhhcHHHHH
Q 014130 409 LHSRIDFLTRENEDLKR 425 (430)
Q Consensus 409 ~~~~~~~~~~~~~~~~~ 425 (430)
++++++.|..+++-|.|
T Consensus 88 l~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 88 LVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 44444444444444444
No 72
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=21.14 E-value=2.3e+02 Score=22.76 Aligned_cols=42 Identities=26% Similarity=0.447 Sum_probs=26.2
Q ss_pred HHHHHhhhhhhhhhHHHhhhHHHHHHH----HhhhhhhhhhhcHHHHHhh
Q 014130 382 KNQVREVVVERATLKLDLMSAQAMINI----LHSRIDFLTRENEDLKRKN 427 (430)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 427 (430)
-+||.++-.|-..| --.+-++|| |-+|||.|..|++-|+--+
T Consensus 8 gkevEnLi~EN~eL----l~TKNaLnvvk~DLI~rvdELt~E~e~l~~El 53 (77)
T 2w83_C 8 GREVENLILENTQL----LETKNALNIVKNDLIAKVDELTCEKDVLQGEL 53 (77)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444444444333 334555555 5689999999999887544
No 73
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=20.83 E-value=1.2e+02 Score=24.55 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHH-HhhhHH
Q 014130 375 AKLIKELKNQVREVVVERATLKL-DLMSAQ 403 (430)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 403 (430)
..||..|++|+..+.-|...+|. |++-.+
T Consensus 38 vdYI~~Lq~e~~r~~e~e~r~k~le~~n~~ 67 (83)
T 4ath_A 38 VDYIRKLQREQQRAKDLENRQKKLEHANRH 67 (83)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 45999999999999877776664 444433
No 74
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=20.81 E-value=60 Score=24.04 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHh
Q 014130 376 KLIKELKNQVREVVVERATLKLDL 399 (430)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~ 399 (430)
.+|++||.++..+.-|-..|+.++
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888877666655555443
No 75
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.80 E-value=1.2e+02 Score=30.86 Aligned_cols=46 Identities=13% Similarity=0.116 Sum_probs=17.9
Q ss_pred HHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHHH
Q 014130 380 ELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLKR 425 (430)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (430)
.|++++.++...-+.+..+....+.-++.++...+.|.+|+++|++
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 551 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEK 551 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHH
Confidence 3333344433333333333333333333333333333444444443
No 76
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=20.39 E-value=1.8e+02 Score=25.47 Aligned_cols=56 Identities=21% Similarity=0.237 Sum_probs=42.1
Q ss_pred CCCCCCCCCCCCccHHHHHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhh
Q 014130 360 PFEANDFDSQMPPDCAKLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTR 418 (430)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (430)
|+++.+++ -.....++.+|-..|.++--||=.|...+.+..--||-|..||..|..
T Consensus 52 pL~id~ls---~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~g 107 (133)
T 1j1d_C 52 PLELAGLG---FAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (133)
T ss_dssp CCCCTTCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCC---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHc
Confidence 34455553 133445888888888888888888888888888999999999988853
No 77
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=20.34 E-value=1.3e+02 Score=20.58 Aligned_cols=29 Identities=14% Similarity=0.385 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhhhhhhhhHHHhhhHHHHH
Q 014130 378 IKELKNQVREVVVERATLKLDLMSAQAMI 406 (430)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (430)
.+.||..+.++--|.+.|+.|+-+-++|+
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 47789999999999998888887777664
No 78
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=20.14 E-value=1.5e+02 Score=23.57 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=16.8
Q ss_pred hhhHHHhhhHHHHHHHHhhhhhhhhhh
Q 014130 393 ATLKLDLMSAQAMINILHSRIDFLTRE 419 (430)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (430)
|.|--|+.+.--.-|+||-|...|.+|
T Consensus 49 ErLNDEiislNIENNlL~~rl~~l~~E 75 (75)
T 3a7o_A 49 ERLNDELISGTIENNVLQQKLSDLKKE 75 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHhhHHHHHhHHHHHHHHHHHHHHhcC
Confidence 455567788877888888888777654
No 79
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=20.12 E-value=2.2e+02 Score=22.41 Aligned_cols=49 Identities=18% Similarity=0.350 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHHHh
Q 014130 375 AKLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLKRK 426 (430)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (430)
.+-|..||..+..-..+++.+|.|+=+ .+.+|-.+|+.|+-=..-|-++
T Consensus 20 e~~v~~le~~Le~s~~~q~~~~~Elk~---~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 20 EGQLSEMEQRLEKSQSEQDAFRSNLKT---LLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHh
Confidence 347888999999999999999999754 5788999999887555555444
No 80
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=20.11 E-value=81 Score=26.61 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=42.4
Q ss_pred CCCCCCCCCCCCccHHHHHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhh
Q 014130 360 PFEANDFDSQMPPDCAKLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFL 416 (430)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (430)
|+++++++ ......++.+|-..|.++--||=.|...+.+..--||-|..||..|
T Consensus 36 pL~id~l~---~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 36 VLAIDHLN---EDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHTTCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCC---HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 34555553 2344458888988898888888888888999999999999999888
No 81
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=20.04 E-value=1.9e+02 Score=26.71 Aligned_cols=37 Identities=32% Similarity=0.478 Sum_probs=25.7
Q ss_pred hhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHHHhhhc
Q 014130 393 ATLKLDLMSAQAMINILHSRIDFLTRENEDLKRKNKA 429 (430)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (430)
..|..|+=..+.+..-|+.+|-.|...|.||.|..|.
T Consensus 91 ~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~ 127 (189)
T 2v71_A 91 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA 127 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3445555555666777777888888888888877664
Done!