BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014132
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MWE|B Chain B, Truncated Human Atp-Citrate Lyase With Tartrate Bound
Length = 335
Score = 188 bits (477), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 112/156 (71%)
Query: 1 MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEY 60
MSNEL N I+R TDG+YEG+AIGGD +PGST DH+LR+ + P VKM+VVLGE+GG +EY
Sbjct: 180 MSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEY 239
Query: 61 SLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAV 120
+ +K+G++ KP+V W GTCA +F SEVQFGHAGA + E+A AKNQAL++AG
Sbjct: 240 KICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVF 299
Query: 121 VPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQI 156
VP S++ I+ +E LV G I P +EV PP +
Sbjct: 300 VPRSFDELGEIIQSVYEDLVANGVIVPAQEVPPPTV 335
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate
Bound
Length = 829
Score = 181 bits (460), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 83/151 (54%), Positives = 109/151 (72%)
Query: 1 MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEY 60
MSNEL N I+R TDG+YEG+AIGGD +PGST DH+LR+ + P VKM+VVLGE+GG +EY
Sbjct: 666 MSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEY 725
Query: 61 SLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAV 120
+ +K+G++ KP+V W GTCA +F SEVQFGHAGA + E+A AKNQAL++AG
Sbjct: 726 KICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVF 785
Query: 121 VPTSYEAFESAIKETFEKLVEEGKIPPVKEV 151
VP S++ I+ +E LV G I P +EV
Sbjct: 786 VPRSFDELGEIIQSVYEDLVANGVIVPAQEV 816
>pdb|3MWD|B Chain B, Truncated Human Atp-Citrate Lyase With Citrate Bound
Length = 334
Score = 181 bits (458), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 108/153 (70%)
Query: 2 SNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYS 61
SNEL N I+R TDG+YEG+AIGGD +PGST DH+LR+ + P VK +VVLGE+GG +EY
Sbjct: 181 SNELNNIISRTTDGVYEGVAIGGDRYPGSTFXDHVLRYQDTPGVKXIVVLGEIGGTEEYK 240
Query: 62 LVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVV 121
+ +K+G++ KP+V W GTCA F SEVQFGHAGA + E+A AKNQAL++AG V
Sbjct: 241 ICRGIKEGRLTKPIVCWCIGTCATXFSSEVQFGHAGACANQASETAVAKNQALKEAGVFV 300
Query: 122 PTSYEAFESAIKETFEKLVEEGKIPPVKEVTPP 154
P S++ I+ +E LV G I P +EV PP
Sbjct: 301 PRSFDELGEIIQSVYEDLVANGVIVPAQEVPPP 333
>pdb|2YV2|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain
From Aeropyrum Pernix K1
Length = 297
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 69/130 (53%), Gaps = 4/130 (3%)
Query: 1 MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEY 60
++ E+ + R G I IGGD G + ++ + F PQ + +V++GE+GG E
Sbjct: 163 LTYEISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGEIGGDMEE 222
Query: 61 SLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGA- 119
E +K+G+ KPV+A+++G R E + GHAGA + + K +ALR+AG
Sbjct: 223 RAAEMIKKGEFTKPVIAYIAG---RTAPPEKRMGHAGAIIMMGTGTYEGKVKALREAGVE 279
Query: 120 VVPTSYEAFE 129
V T +E E
Sbjct: 280 VAETPFEVPE 289
>pdb|2NUA|A Chain A, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NUA|D Chain D, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 7/135 (5%)
Query: 6 YNTIARVTD---GIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL 62
Y + + TD G + IGGD PGS D + F PQ + +V++GE+GG E
Sbjct: 158 YEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEA 217
Query: 63 VEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVP 122
+K+ V KPVV +++G A K + GHAGA G +A K AL AG
Sbjct: 218 AAYIKE-HVTKPVVGYIAGVTAPKGK---RMGHAGAIIAGGKGTADEKFAALEAAGVKTV 273
Query: 123 TSYEAFESAIKETFE 137
S A+K +
Sbjct: 274 RSLADIGEALKTVLK 288
>pdb|1JKJ|A Chain A, E. Coli Scs
pdb|1JKJ|D Chain D, E. Coli Scs
pdb|1JLL|A Chain A, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
pdb|1JLL|D Chain D, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
Length = 288
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 7/135 (5%)
Query: 6 YNTIARVTD---GIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL 62
Y + + TD G + IGGD PGS D + F PQ + +V++GE+GG E
Sbjct: 158 YEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEA 217
Query: 63 VEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVP 122
+K+ V KPVV +++G A K + GHAGA G +A K AL AG
Sbjct: 218 AAYIKE-HVTKPVVGYIAGVTAPKGK---RMGHAGAIIAGGKGTADEKFAALEAAGVKTV 273
Query: 123 TSYEAFESAIKETFE 137
S A+K +
Sbjct: 274 RSLADIGEALKTVLK 288
>pdb|2NU8|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|D Chain D, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 7/135 (5%)
Query: 6 YNTIARVTD---GIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL 62
Y + + TD G + IGGD PGS D + F PQ + +V++GE+GG E
Sbjct: 158 YEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEA 217
Query: 63 VEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVP 122
+K+ V KPVV +++G A K + GHAGA G +A K AL AG
Sbjct: 218 AAYIKE-HVTKPVVGYIAGVTAPKGK---RMGHAGAIIAGGKGTADEKFAALEAAGVKTV 273
Query: 123 TSYEAFESAIKETFE 137
S A+K +
Sbjct: 274 RSLADIGEALKTVLK 288
>pdb|2NU7|A Chain A, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|D Chain D, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 7/135 (5%)
Query: 6 YNTIARVTD---GIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL 62
Y + + TD G + IGGD PGS D + F PQ + +V++GE+GG E
Sbjct: 158 YEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEA 217
Query: 63 VEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVP 122
+K+ V KPVV +++G A K + GHAGA G +A K AL AG
Sbjct: 218 AAYIKE-HVTKPVVGYIAGVTAPKGK---RMGHAGAIIAGGKGTADEKFAALEAAGVKTV 273
Query: 123 TSYEAFESAIKETFE 137
S A+K +
Sbjct: 274 RSLADIGEALKTVLK 288
>pdb|1CQI|A Chain A, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQI|D Chain D, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQJ|A Chain A, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQJ|D Chain D, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
Length = 286
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 6 YNTIARVTD---GIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL 62
Y + + TD G + IGGD PGS D + F PQ + +V++GE+GG E
Sbjct: 158 YEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEA 217
Query: 63 VEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAG 118
+K+ V KPVV +++G A K + GHAGA G +A K AL AG
Sbjct: 218 AAYIKE-HVTKPVVGYIAGVTAPKGK---RMGHAGAIIAGGKGTADEKFAALEAAG 269
>pdb|2P2W|A Chain A, Crystal Structure Of Citrate Synthase From Thermotoga
Maritima Msb8
Length = 367
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 73/170 (42%), Gaps = 23/170 (13%)
Query: 245 TIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKD--AYDRGLSAYEFVESMKKK 301
+V A DL S +V L + GP GGA + ++ + DR EFV+ K+
Sbjct: 185 ALVIASTLSDLYSCIVGALGALKGPLHGGASEKVPPMLEEIGSEDR---VEEFVQKCLKE 241
Query: 302 GIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLS-KANNLVLNV 360
++ G GHR+ + D R L++ + HFP K A ++E Y +S K N+ NV
Sbjct: 242 KRKIMGFGHRVYK--TYDPRAVFLKRVLQEHFPDSKLFRIASKLEEYIVSNKIKNIYPNV 299
Query: 361 DGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFD 410
D LF +L MF+ LF AR +G H +
Sbjct: 300 DLYSSVLFEELGFPRNMFT--------------ALFATARVVGWTAHVIE 335
>pdb|1OI7|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase Alpha
Subunit From Thermus Thermophilus
Length = 288
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 25 DVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCA 84
D G+T D + FN P+ + +V++GE+GG DE +K + KPVV ++ G A
Sbjct: 180 DPVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKD-HMKKPVVGFIGGRSA 238
Query: 85 RLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETF 136
K + GHAGA G + + ++K +A +AG V + + +K+
Sbjct: 239 PKGK---RMGHAGAIIMGNVGTPESKLRAFAEAGIPVADTIDEIVELVKKAL 287
>pdb|3UFX|A Chain A, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|D Chain D, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|F Chain F, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|H Chain H, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
Length = 296
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 25 DVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCA 84
D G+T D + FN P+ + +V++GE+GG DE +K + KPVV ++ G A
Sbjct: 180 DPVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKD-HMKKPVVGFIGGRSA 238
Query: 85 RLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETF 136
K + GHAGA G + + ++K +A +AG V + + +K+
Sbjct: 239 PKGK---RMGHAGAIIMGNVGTPESKLRAFAEAGIPVADTIDEIVELVKKAL 287
>pdb|2NU9|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|D Chain D, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|F Chain F, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|H Chain H, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
Length = 288
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 6 YNTIARVTD---GIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL 62
Y + + TD G + IGGD PGS D + F PQ + +V++GE+GG E
Sbjct: 158 YEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEA 217
Query: 63 VEALKQGKVNKPVVAWVSGTCA 84
+K+ V KPVV +++G A
Sbjct: 218 AAYIKE-HVTKPVVGYIAGVTA 238
>pdb|2NU6|A Chain A, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU6|D Chain D, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 6 YNTIARVTD---GIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL 62
Y + + TD G + IGGD PGS D + F PQ + +V++GE+GG E
Sbjct: 158 YEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEA 217
Query: 63 VEALKQGKVNKPVVAWVSGTCA 84
+K+ V KPVV +++G A
Sbjct: 218 AAYIKE-HVTKPVVGYIAGVTA 238
>pdb|2SCU|A Chain A, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|2SCU|D Chain D, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|1SCU|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|1SCU|D Chain D, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
Length = 288
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 6 YNTIARVTD---GIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL 62
Y + + TD G + IGGD PGS D + F PQ + +V++GE+GG E
Sbjct: 158 YEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEA 217
Query: 63 VEALKQGKVNKPVVAWVSGTCA 84
+K+ V KPVV +++G A
Sbjct: 218 AAYIKE-HVTKPVVGYIAGVTA 238
>pdb|1O7X|A Chain A, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|B Chain B, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|C Chain C, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|D Chain D, Citrate Synthase From Sulfolobus Solfataricus
Length = 377
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 32/209 (15%)
Query: 228 CIMLCADHG-PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAY 285
++L DH P + A +V A D+ SSL + L + GP GGA ++A + F +
Sbjct: 176 ALILYTDHEVPASTTA--ALVAASTLSDMYSSLTAALAALKGPLHGGAAEEAFKQFIEIG 233
Query: 286 DRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFART----HFPSVKYMEY 341
D F + + + R+ G GHR+ + D R ++ +K A T + + +Y E
Sbjct: 234 DPNRVQNWFNDKVVNQKNRLMGFGHRVYK--TYDPRAKIFKKLALTLIERNADARRYFEI 291
Query: 342 AVQVETYTLSK--ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLA 399
A ++E + + + + N D G +F L MF+ LF L+
Sbjct: 292 AQKLEELGIKQFSSKGIYPNTDFYSGIVFYALGFPVYMFT--------------ALFALS 337
Query: 400 RSIGLIGHTF----DQKRLKQP--LYRHP 422
R++G + H +Q RL +P LY P
Sbjct: 338 RTLGWLAHIIEYVEEQHRLIRPRALYVGP 366
>pdb|1IOM|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|B Chain B, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|C Chain C, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|D Chain D, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
Length = 377
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 24/205 (11%)
Query: 222 TQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARY 280
+ ++ ++L A+HG S I DL S++ + + ++ GPR GGA + R
Sbjct: 171 ARLMDAALILHAEHGFNAS-TFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRM 229
Query: 281 FKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFAR----THFPSV 336
++ A E+V K R+ G+GHR+ + D R +L+K AR H S
Sbjct: 230 IQEI-GTPERAREWVREKLAKKERIMGMGHRVYKAF--DPRAGVLEKLARLVAEKHGHSK 286
Query: 337 KY-MEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGL 395
+Y + V+ E + + NVD G ++ DL FS + + +
Sbjct: 287 EYQILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDL-----GFS---------LEFFTPI 332
Query: 396 FVLARSIGLIGHTFDQKRLKQPLYR 420
F +AR G +GH + + L L R
Sbjct: 333 FAVARISGWVGHILEYQELDNRLLR 357
>pdb|1EUC|A Chain A, Crystal Structure Of Dephosphorylated Pig Heart, Gtp-
Specific Succinyl-Coa Synthetase
Length = 311
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Query: 20 IAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQ---GKVNKPVV 76
+ IGGD F G+ +D + F N P + ++++GE+GG E + E LKQ G +KPVV
Sbjct: 189 VGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVV 248
Query: 77 AWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETF 136
++++G A + + GHAGA G A+ K AL+ AG VV S + I + F
Sbjct: 249 SFIAGLTAPPGR---RMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEF 305
Query: 137 EK 138
EK
Sbjct: 306 EK 307
>pdb|2FPG|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gdp
Length = 305
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Query: 20 IAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQ---GKVNKPVV 76
+ IGGD F G+ +D + F N P + ++++GE+GG E + E LKQ G +KPVV
Sbjct: 183 VGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVV 242
Query: 77 AWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETF 136
++++G A + + GHAGA G A+ K AL+ AG VV S + I + F
Sbjct: 243 SFIAGLTAPPGR---RMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEF 299
Query: 137 EK 138
EK
Sbjct: 300 EK 301
>pdb|2C6X|A Chain A, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|B Chain B, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|C Chain C, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|D Chain D, Structure Of Bacillus Subtilis Citrate Synthase
Length = 363
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 225 IEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKD 283
+E ++L +HG S + VT DLVS++ + L T+ GP GGA + +D
Sbjct: 167 LETYMILATEHGMNAS-TFSARVTLSTESDLVSAVTAALGTMKGPLHGGAPSAVTKMLED 225
Query: 284 AYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAV 343
++ A +++ +KG R+ G GHR+ + +D R E L++ A + + ++ A+
Sbjct: 226 IGEKE-HAEAYLKEKLEKGERLMGFGHRVYK--TKDPRAEALRQKAEEVAGNDRDLDLAL 282
Query: 344 QVE 346
VE
Sbjct: 283 HVE 285
>pdb|1EUD|A Chain A, Crystal Structure Of Phosphorylated Pig Heart,
Gtp-Specific Succinyl-Coa Synthetase
Length = 311
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 20 IAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQ---GKVNKPVV 76
+ IGGD F G+ +D + F N P + ++++GE+GG E + E LKQ G +KPVV
Sbjct: 189 VGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVV 248
Query: 77 AWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETF 136
++++G A + + G AGA G A+ K AL+ AG VV S + I + F
Sbjct: 249 SFIAGLTAPPGR---RMGXAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEF 305
Query: 137 EK 138
EK
Sbjct: 306 EK 307
>pdb|2FP4|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gtp
pdb|2FPI|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol
pdb|2FPP|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol With Chloride Ions
Length = 305
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 20 IAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQ---GKVNKPVV 76
+ IGGD F G+ +D + F N P + ++++GE+GG E + E LKQ G +KPVV
Sbjct: 183 VGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVV 242
Query: 77 AWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETF 136
++++G A + + G AGA G A+ K AL+ AG VV S + I + F
Sbjct: 243 SFIAGLTAPPGR---RMGXAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEF 299
Query: 137 EK 138
EK
Sbjct: 300 EK 301
>pdb|2R26|A Chain A, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|B Chain B, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|C Chain C, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|D Chain D, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
Length = 384
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 24/215 (11%)
Query: 213 FKRSLPRYCTQFIEICIMLCADHG-PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRF 270
F R + + ++L DH P + A +V D+ S + + L + GP
Sbjct: 165 FGRKATKEEIDAMNTALILYTDHEVPASTTA--GLVAVSTLSDMYSGITAALAALKGPLH 222
Query: 271 GGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRI-KRGDNRDKRVELLQKFA 329
GGA + A F + D + F +++ R+ G GHR+ K D R K + + +
Sbjct: 223 GGAAEAAIAQFDEIKDPAMVEKWFNDNIINGKKRLMGFGHRVYKTYDPRAKIFKGIAEKL 282
Query: 330 RTHFPSV-KYMEYAVQVETYTLSK--ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEI 386
+ P V K E A ++E + + + + N D G +++ + G + I
Sbjct: 283 SSKKPEVHKVYEIATKLEDFGIKAFGSKGIYPNTDYFSGIVYMSI----GFPLRNNI--- 335
Query: 387 VEIGYLNGLFVLARSIGLIGHTF----DQKRLKQP 417
LF L+R G H +Q+RL +P
Sbjct: 336 -----YTALFALSRVTGWQAHFIEYVEEQQRLIRP 365
>pdb|2IFC|A Chain A, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|B Chain B, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|C Chain C, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|D Chain D, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2R9E|A Chain A, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|B Chain B, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|C Chain C, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|D Chain D, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
Length = 385
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 24/215 (11%)
Query: 213 FKRSLPRYCTQFIEICIMLCADHG-PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRF 270
F R + + ++L DH P + A +V D+ S + + L + GP
Sbjct: 166 FGRKATKEEIDAMNTALILYTDHEVPASTTA--GLVAVSTLSDMYSGITAALAALKGPLH 223
Query: 271 GGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRI-KRGDNRDKRVELLQKFA 329
GGA + A F + D + F +++ R+ G GHR+ K D R K + + +
Sbjct: 224 GGAAEAAIAQFDEIKDPAMVEKWFNDNIINGKKRLMGFGHRVYKTYDPRAKIFKGIAEKL 283
Query: 330 RTHFPSV-KYMEYAVQVETYTLSK--ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEI 386
+ P V K E A ++E + + + + N D G +++ + G + I
Sbjct: 284 SSKKPEVHKVYEIATKLEDFGIKAFGSKGIYPNTDYFSGIVYMSI----GFPLRNNI--- 336
Query: 387 VEIGYLNGLFVLARSIGLIGHTF----DQKRLKQP 417
LF L+R G H +Q+RL +P
Sbjct: 337 -----YTALFALSRVTGWQAHFIEYVEEQQRLIRP 366
>pdb|2YV1|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain
From Methanocaldococcus Jannaschii Dsm 2661
Length = 294
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Query: 1 MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEY 60
++ E+ + I + G+ + IGGD G + + F + + +V++GE+GG E
Sbjct: 162 LTYEIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGEIGGGAEE 221
Query: 61 SLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAV 120
+ ++ K+ KPV+ +++G A K + GHAGA +A++K +AL +AGA
Sbjct: 222 EAAKFIE--KMKKPVIGYIAGQSAPEGK---RMGHAGAIVEKGKGTAESKMKALEEAGAY 276
Query: 121 V 121
V
Sbjct: 277 V 277
>pdb|3HWK|A Chain A, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|B Chain B, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|C Chain C, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|D Chain D, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|E Chain E, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|F Chain F, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|G Chain G, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|H Chain H, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
Length = 414
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 79/188 (42%), Gaps = 17/188 (9%)
Query: 225 IEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDA 284
E ++L A+HG S +VT+ D+ S++ + + R G ++A +
Sbjct: 218 FEQSMILYAEHGFNASTFAARVVTS-TQSDIYSAVTGAIGALKGRLHGGANEAVMHDMIE 276
Query: 285 YDRGLSAYEFVESMKKKGIRVPGIGHRIKR-GDNRDKRVELLQKFARTHFPSVKYMEYAV 343
+A E++ + + ++ G GHR+ R GD+R ++ + T ++++
Sbjct: 277 IGDPANAREWLRAKLARKEKIMGFGHRVYRHGDSRVPTMKRALERVGTVRDGQRWLDI-Y 335
Query: 344 QVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIG 403
QV ++ A ++ N+D G + L G +I +FV++R G
Sbjct: 336 QVLAAEMASATGILPNLDFPTGPAY--YLMG------------FDIASFTPIFVMSRITG 381
Query: 404 LIGHTFDQ 411
H +Q
Sbjct: 382 WTAHIMEQ 389
>pdb|2H12|A Chain A, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|B Chain B, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|C Chain C, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|D Chain D, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|E Chain E, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|F Chain F, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
Length = 436
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 79/191 (41%), Gaps = 30/191 (15%)
Query: 229 IMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDR 287
++L ADH S + + G + + + +G+ + GP GGA ++A +
Sbjct: 231 LILHADHEQNASTS-TVRLAGSTGANPFACIAAGIAALWGPAHGGA-NEAVLKMLARIGK 288
Query: 288 GLSAYEFVESMKKK--GIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSV-----KYME 340
+ F+ +K K G+++ G GHR+ + N D R +++Q+ + ++
Sbjct: 289 KENIPAFIAQVKDKNSGVKLMGFGHRVYK--NFDPRAKIMQQTCHEVLTELGIKDDPLLD 346
Query: 341 YAVQVETYTLSK----ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLF 396
AV++E LS L NVD G + + + MF+ LF
Sbjct: 347 LAVELEKIALSDDYFVQRKLYPNVDFYSGIILKAMGIPTSMFTV--------------LF 392
Query: 397 VLARSIGLIGH 407
+AR+ G +
Sbjct: 393 AVARTTGWVSQ 403
>pdb|3NIY|A Chain A, Crystal Structure Of Native Xylanase 10b From Thermotoga
Petrophila Rku-1
pdb|3NIY|B Chain B, Crystal Structure Of Native Xylanase 10b From Thermotoga
Petrophila Rku-1
pdb|3NJ3|A Chain A, Crystal Structure Of Xylanase 10b From Thermotoga
Petrophila Rku-1 In Complex With Xylobiose
pdb|3NJ3|B Chain B, Crystal Structure Of Xylanase 10b From Thermotoga
Petrophila Rku-1 In Complex With Xylobiose
Length = 341
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 22/85 (25%)
Query: 265 TIGPRFGGAIDDAARYFKDA-------YD---------RGLSAYEFVESMKKKGIRVPGI 308
TIGP + I+ A R+ K+A Y+ + Y ++ +K+KG+ V GI
Sbjct: 166 TIGPEY---IEKAFRWTKEADPDAILIYNDYSIEEINAKSNFVYNMIKELKEKGVPVDGI 222
Query: 309 GHRIK---RGDNRDKRVELLQKFAR 330
G ++ RG N D L++FA+
Sbjct: 223 GFQMHIDYRGLNYDSFRRNLERFAK 247
>pdb|3O8J|A Chain A, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|B Chain B, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|C Chain C, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|D Chain D, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|E Chain E, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|F Chain F, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|G Chain G, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|H Chain H, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|I Chain I, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|J Chain J, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
Length = 404
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 80/191 (41%), Gaps = 19/191 (9%)
Query: 225 IEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKD 283
+ I ++L A+H S + V A G D+ S+++ + + GP+ GGA ++ + +
Sbjct: 205 MHISLVLYAEHEFNAS-TFTSRVIAGTGSDVYSAIIGAIGALRGPKHGGA-NEVSLEIQQ 262
Query: 284 AYDRGLSAYEFVESMKKKGIRVPGIGHRIKR-GDNRDKRVELLQKFARTHFPSVKYMEYA 342
Y+ A + + V G GH + D R + ++ + K S+K A
Sbjct: 263 RYETPDEAEADIRKRVENKEVVIGFGHPVYTIADPRHQVIKRVAKQLSEEGGSLKMYHIA 322
Query: 343 VQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSI 402
++ET + + + N+D + + + MF+ LFV+AR
Sbjct: 323 DRLET-VMWETKKMFPNLDWFSAVSYNMMGVPTEMFTP--------------LFVIARVT 367
Query: 403 GLIGHTFDQKR 413
G H +Q++
Sbjct: 368 GWAAHIIEQRQ 378
>pdb|4AQ4|A Chain A, Substrate Bound Sn-Glycerol-3-Phosphate Binding
Periplasmic Protein Ugpb From Escherichia Coli
Length = 419
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 33 SDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCA 84
+D +L FN QVK + +L E+ + ++S V G+ ++ + +G CA
Sbjct: 200 TDAVLEFNKPEQVKHIAMLEEMNKKGDFSYV-----GRKDESTEKFYNGDCA 246
>pdb|4H63|V Chain V, Structure Of The Schizosaccharomyces Pombe Mediator Head
Module
Length = 135
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 255 LVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEF---VESMKKKGIRVPGIGHR 311
L SS+ + LTI RF +D A KD Y Y+ SM + ++ + +
Sbjct: 16 LNSSIDNATLTILSRFQDILDIAINEGKDKYTVAPEVYQIECHTVSMVRAVEQLLDVSRQ 75
Query: 312 IKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNV 360
IK L T FP+V Y E ++ TL+K N +L V
Sbjct: 76 IKS--------YWLTNSLSTSFPTVDYSEPDLEKVKRTLTKLQNHLLEV 116
>pdb|1VBR|A Chain A, Crystal Structure Of Complex Xylanase 10b From Thermotoga
Maritima With Xylobiose
pdb|1VBR|B Chain B, Crystal Structure Of Complex Xylanase 10b From Thermotoga
Maritima With Xylobiose
pdb|1VBU|A Chain A, Crystal Structure Of Native Xylanase 10b From Thermotoga
Maritima
pdb|1VBU|B Chain B, Crystal Structure Of Native Xylanase 10b From Thermotoga
Maritima
Length = 328
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 22/85 (25%)
Query: 265 TIGPRFGGAIDDAARYFKDA-------YD---------RGLSAYEFVESMKKKGIRVPGI 308
TIGP + I+ A R+ K+A Y+ + Y ++ +K+KG+ V GI
Sbjct: 150 TIGPEY---IEKAFRWAKEADPDAILIYNDYSIEEINAKSNFVYNMIKELKEKGVPVDGI 206
Query: 309 GHRIK---RGDNRDKRVELLQKFAR 330
G ++ RG N D L++FA+
Sbjct: 207 GFQMHIDYRGLNYDSFRRNLERFAK 231
>pdb|3TQG|A Chain A, Structure Of The 2-Methylcitrate Synthase (Prpc) From
Coxiella Burnetii
pdb|3TQG|B Chain B, Structure Of The 2-Methylcitrate Synthase (Prpc) From
Coxiella Burnetii
Length = 375
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 65/163 (39%), Gaps = 20/163 (12%)
Query: 254 DLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRI 312
D+ S++ + + T+ GP GGA ++AA Y A ++ + G GH +
Sbjct: 204 DIYSAVTAAIATLRGPLHGGA-NEAAXDLIXLYKTPSEAIAGIKRKLANKELIXGFGHAV 262
Query: 313 KRGDNRDKRVELLQKFARTHFPSVK--YMEYAVQVETYTLSKANNLVLNVDGAIGSLFLD 370
R RD R +++ +A+ P+ Y+ T L N+D + +
Sbjct: 263 YR--ERDPRNAIIKSWAQKLAPNAADGYLFDISDAIENTXQDEKKLFPNLDFYSATAYHF 320
Query: 371 LLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKR 413
L + +F+ +FV +R G H F+Q++
Sbjct: 321 LNIPTKLFTP--------------IFVXSRVTGWCAHIFEQRK 349
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,040,445
Number of Sequences: 62578
Number of extensions: 559575
Number of successful extensions: 1714
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1672
Number of HSP's gapped (non-prelim): 52
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)