Query 014132
Match_columns 430
No_of_seqs 272 out of 2321
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 02:09:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02522 ATP citrate (pro-S)-l 100.0 8E-101 2E-105 812.9 38.9 430 1-430 179-608 (608)
2 COG0372 GltA Citrate synthase 100.0 2.3E-63 5E-68 504.2 22.2 334 17-426 31-377 (390)
3 cd06115 AthCS_per_like Arabido 100.0 2.5E-61 5.5E-66 494.5 21.6 341 17-429 40-409 (410)
4 cd06116 CaCS_like Chloroflexus 100.0 3.1E-61 6.7E-66 491.0 20.1 334 17-422 20-374 (384)
5 PRK14035 citrate synthase; Pro 100.0 3.6E-60 7.8E-65 481.3 21.3 333 24-429 24-366 (371)
6 cd06109 BsCS-I_like Bacillus s 100.0 2E-60 4.4E-65 480.3 19.4 235 159-422 103-344 (349)
7 cd06106 ScCit3_like Saccharomy 100.0 1.4E-60 2.9E-65 490.6 18.2 344 17-423 51-422 (428)
8 PRK12351 methylcitrate synthas 100.0 1.8E-60 3.8E-65 484.2 18.7 333 16-421 22-364 (378)
9 cd06107 EcCS_AthCS-per_like Es 100.0 2.6E-60 5.6E-65 483.9 19.3 333 17-421 20-376 (382)
10 PRK12350 citrate synthase 2; P 100.0 1.9E-59 4.1E-64 472.0 23.2 231 160-421 99-340 (353)
11 TIGR01793 cit_synth_euk citrat 100.0 2.7E-60 5.8E-65 487.7 17.4 342 17-422 54-420 (427)
12 TIGR01798 cit_synth_I citrate 100.0 5.6E-60 1.2E-64 484.9 19.4 324 26-421 57-400 (412)
13 PRK14036 citrate synthase; Pro 100.0 7.6E-60 1.7E-64 480.1 18.9 333 16-421 18-362 (377)
14 cd06108 Ec2MCS_like Escherichi 100.0 2.1E-59 4.7E-64 474.4 21.8 330 16-421 13-352 (363)
15 cd06117 Ec2MCS_like_1 Subgroup 100.0 1.2E-59 2.6E-64 477.0 19.4 333 16-421 13-355 (366)
16 PLN02456 citrate synthase 100.0 1.4E-59 3.1E-64 486.7 19.0 327 22-421 84-440 (455)
17 PRK05614 gltA type II citrate 100.0 5.4E-59 1.2E-63 478.9 19.6 320 23-414 66-404 (419)
18 cd06105 ScCit1-2_like Saccharo 100.0 4E-59 8.6E-64 479.6 17.1 336 21-422 55-417 (427)
19 cd06103 ScCS-like Saccharomyce 100.0 8.9E-59 1.9E-63 477.3 19.6 345 17-423 51-420 (426)
20 cd06112 citrate_synt_like_1_1 100.0 3.1E-58 6.8E-63 468.3 20.6 235 159-421 118-362 (373)
21 PRK14037 citrate synthase; Pro 100.0 2E-58 4.3E-63 469.8 19.0 330 16-420 18-358 (377)
22 PRK14034 citrate synthase; Pro 100.0 8.4E-58 1.8E-62 464.1 23.3 324 24-421 24-357 (372)
23 PRK09569 type I citrate syntha 100.0 1.5E-58 3.2E-63 476.6 16.7 337 17-421 53-419 (437)
24 KOG1254 ATP-citrate lyase [Ene 100.0 4.6E-59 9.9E-64 469.3 12.5 430 1-430 171-600 (600)
25 cd06114 EcCS_like Escherichia 100.0 5.3E-58 1.1E-62 469.9 18.9 324 26-421 52-394 (400)
26 PRK14032 citrate synthase; Pro 100.0 6E-58 1.3E-62 474.1 19.1 260 143-428 150-441 (447)
27 cd06113 citrate_synt_like_1_2 100.0 3.9E-57 8.5E-62 464.2 18.8 253 143-421 120-400 (406)
28 cd06101 citrate_synt Citrate s 100.0 6.5E-57 1.4E-61 439.9 18.3 233 172-422 6-262 (265)
29 cd06111 DsCS_like Cold-active 100.0 2.4E-56 5.3E-61 452.9 22.9 233 159-421 114-350 (362)
30 PRK14033 citrate synthase; Pro 100.0 1.1E-55 2.3E-60 449.7 23.8 243 143-415 109-355 (375)
31 TIGR01800 cit_synth_II 2-methy 100.0 1.9E-55 4.1E-60 447.8 24.8 228 158-414 113-344 (368)
32 PRK12349 citrate synthase 3; P 100.0 1.3E-55 2.8E-60 448.7 23.1 242 144-414 106-351 (369)
33 cd06118 citrate_synt_like_1 Ci 100.0 2.3E-55 5E-60 446.3 23.3 236 159-422 114-355 (358)
34 cd06110 BSuCS-II_like Bacillus 100.0 5.5E-55 1.2E-59 443.0 23.9 233 159-421 114-350 (356)
35 PF00285 Citrate_synt: Citrate 100.0 1.7E-55 3.7E-60 447.2 18.1 333 16-421 12-356 (356)
36 PRK06224 citrate synthase; Pro 100.0 5.5E-55 1.2E-59 426.4 20.0 238 174-429 8-255 (263)
37 cd06102 citrate_synt_like_2 Ci 100.0 7.4E-55 1.6E-59 427.1 19.9 222 177-421 23-276 (282)
38 cd06099 CS_ACL-C_CCL Citrate s 100.0 2E-53 4.3E-58 403.4 20.0 203 203-422 1-210 (213)
39 cd06100 CCL_ACL-C Citryl-CoA l 100.0 3.8E-53 8.3E-58 405.4 21.4 220 191-428 1-227 (227)
40 KOG2617 Citrate synthase [Ener 100.0 2E-44 4.4E-49 357.0 11.7 332 25-422 83-439 (458)
41 COG0074 SucD Succinyl-CoA synt 100.0 1.6E-33 3.5E-38 270.9 14.9 136 1-139 157-292 (293)
42 PTZ00187 succinyl-CoA syntheta 100.0 2.5E-31 5.5E-36 264.0 15.3 136 1-139 181-316 (317)
43 KOG1255 Succinyl-CoA synthetas 100.0 4.1E-31 9E-36 247.4 13.3 136 1-139 188-326 (329)
44 PLN00125 Succinyl-CoA ligase [ 99.9 1.6E-26 3.5E-31 228.9 16.3 135 1-138 162-296 (300)
45 PRK05678 succinyl-CoA syntheta 99.9 8.5E-25 1.8E-29 216.2 15.2 135 1-139 157-291 (291)
46 TIGR01019 sucCoAalpha succinyl 99.9 8.6E-25 1.9E-29 215.6 14.5 132 1-136 155-286 (286)
47 PF13607 Succ_CoA_lig: Succiny 99.9 9.8E-24 2.1E-28 187.3 10.3 118 2-133 14-136 (138)
48 TIGR02717 AcCoA-syn-alpha acet 99.8 2.8E-20 6.1E-25 194.8 11.8 120 1-134 162-286 (447)
49 PRK06091 membrane protein FdrA 99.6 5.2E-15 1.1E-19 155.9 11.7 108 1-137 205-317 (555)
50 COG1042 Acyl-CoA synthetase (N 99.4 5.2E-13 1.1E-17 143.6 8.9 122 2-137 167-293 (598)
51 PF00549 Ligase_CoA: CoA-ligas 99.3 3.5E-12 7.6E-17 115.1 8.4 116 1-119 7-152 (153)
52 PRK12349 citrate synthase 3; P 97.1 0.0022 4.8E-08 66.1 9.4 87 175-267 15-105 (369)
53 PRK14032 citrate synthase; Pro 96.8 0.0017 3.8E-08 68.4 6.0 125 130-268 4-151 (447)
54 cd06112 citrate_synt_like_1_1 96.8 0.0048 1E-07 63.7 8.6 90 173-268 9-102 (373)
55 PRK14037 citrate synthase; Pro 96.7 0.0054 1.2E-07 63.4 8.6 91 171-267 10-104 (377)
56 PRK14036 citrate synthase; Pro 96.7 0.0056 1.2E-07 63.3 8.6 91 171-267 10-104 (377)
57 cd06118 citrate_synt_like_1 Ci 96.6 0.0021 4.7E-08 66.0 4.4 89 173-267 7-99 (358)
58 cd06108 Ec2MCS_like Escherichi 96.5 0.013 2.8E-07 60.4 9.6 89 173-267 7-99 (363)
59 cd06109 BsCS-I_like Bacillus s 96.4 0.018 3.8E-07 59.1 9.9 106 172-284 6-113 (349)
60 TIGR01793 cit_synth_euk citrat 96.4 0.046 9.9E-07 57.5 13.0 97 165-267 39-147 (427)
61 cd06115 AthCS_per_like Arabido 96.4 0.017 3.8E-07 60.3 9.7 91 171-267 31-125 (410)
62 cd06110 BSuCS-II_like Bacillus 96.4 0.014 3E-07 60.0 8.8 88 173-266 7-98 (356)
63 cd06105 ScCit1-2_like Saccharo 96.3 0.062 1.4E-06 56.5 13.3 98 165-268 36-145 (427)
64 cd06111 DsCS_like Cold-active 96.3 0.028 6.2E-07 57.9 10.5 88 174-267 8-99 (362)
65 PRK12351 methylcitrate synthas 96.3 0.027 5.9E-07 58.3 10.3 90 173-268 16-109 (378)
66 PRK09569 type I citrate syntha 96.3 0.067 1.5E-06 56.4 13.2 99 165-266 38-145 (437)
67 TIGR01800 cit_synth_II 2-methy 96.2 0.024 5.3E-07 58.5 9.8 88 173-266 7-98 (368)
68 cd06116 CaCS_like Chloroflexus 96.2 0.037 8.1E-07 57.4 11.0 92 172-267 12-105 (384)
69 cd06113 citrate_synt_like_1_2 96.2 0.0088 1.9E-07 62.5 6.4 81 186-270 37-123 (406)
70 PRK14035 citrate synthase; Pro 96.2 0.037 7.9E-07 57.2 10.8 91 172-267 10-102 (371)
71 cd06106 ScCit3_like Saccharomy 96.2 0.063 1.4E-06 56.5 12.7 99 164-268 35-145 (428)
72 TIGR01798 cit_synth_I citrate 96.1 0.025 5.4E-07 59.2 9.0 92 170-267 37-132 (412)
73 cd06107 EcCS_AthCS-per_like Es 96.1 0.054 1.2E-06 56.2 11.4 91 172-268 12-106 (382)
74 PRK14033 citrate synthase; Pro 96.1 0.045 9.7E-07 56.7 10.6 91 171-267 15-109 (375)
75 cd06117 Ec2MCS_like_1 Subgroup 96.0 0.039 8.4E-07 57.0 10.0 89 173-267 7-99 (366)
76 PRK14034 citrate synthase; Pro 96.0 0.03 6.4E-07 57.9 9.0 88 174-267 12-102 (372)
77 cd06103 ScCS-like Saccharomyce 95.9 0.15 3.4E-06 53.6 13.9 99 165-268 36-145 (426)
78 PLN02456 citrate synthase 95.7 0.048 1E-06 57.8 9.3 93 169-267 68-164 (455)
79 PRK05614 gltA type II citrate 95.3 0.077 1.7E-06 55.7 9.1 89 173-267 53-145 (419)
80 cd06114 EcCS_like Escherichia 95.3 0.076 1.6E-06 55.5 8.8 91 171-267 33-127 (400)
81 TIGR01016 sucCoAbeta succinyl- 92.7 1.1 2.3E-05 46.5 11.3 104 5-132 272-381 (386)
82 PF00285 Citrate_synt: Citrate 92.2 0.074 1.6E-06 54.7 1.8 84 177-266 10-97 (356)
83 PRK00696 sucC succinyl-CoA syn 91.7 1.6 3.5E-05 45.2 11.1 107 5-135 272-384 (388)
84 TIGR00706 SppA_dom signal pept 90.8 1.3 2.8E-05 41.8 8.6 55 30-84 16-73 (207)
85 cd07014 S49_SppA Signal peptid 88.9 0.95 2.1E-05 41.5 5.9 54 31-84 26-83 (177)
86 cd00394 Clp_protease_like Case 88.0 0.94 2E-05 40.6 5.2 53 30-84 14-69 (161)
87 PRK14046 malate--CoA ligase su 86.1 9 0.0002 40.0 11.8 106 5-137 272-383 (392)
88 cd07022 S49_Sppa_36K_type Sign 86.0 1.8 3.8E-05 41.1 6.1 55 30-84 28-85 (214)
89 cd07023 S49_Sppa_N_C Signal pe 84.0 2 4.3E-05 40.4 5.4 55 30-84 20-78 (208)
90 PRK12350 citrate synthase 2; P 83.7 0.66 1.4E-05 47.7 2.1 47 173-220 9-57 (353)
91 TIGR02717 AcCoA-syn-alpha acet 83.7 7.9 0.00017 41.1 10.3 85 30-137 356-445 (447)
92 cd07018 S49_SppA_67K_type Sign 83.0 1.7 3.7E-05 41.5 4.5 52 30-81 32-87 (222)
93 PLN00124 succinyl-CoA ligase [ 80.9 10 0.00022 40.0 9.8 79 5-84 307-389 (422)
94 cd07019 S49_SppA_1 Signal pept 80.2 3.4 7.4E-05 39.1 5.5 54 31-84 25-82 (211)
95 COG0616 SppA Periplasmic serin 78.1 5.2 0.00011 40.5 6.3 68 17-84 67-140 (317)
96 PRK06494 enoyl-CoA hydratase; 77.2 5.8 0.00012 38.7 6.2 53 32-84 36-106 (259)
97 COG0372 GltA Citrate synthase 75.4 3.4 7.5E-05 43.1 4.2 89 169-263 20-112 (390)
98 COG2204 AtoC Response regulato 74.4 14 0.00031 39.4 8.6 98 48-151 167-270 (464)
99 PRK05980 enoyl-CoA hydratase; 74.0 6.9 0.00015 38.1 5.8 53 32-84 35-112 (260)
100 COG0045 SucC Succinyl-CoA synt 73.1 27 0.00058 36.3 9.9 104 5-132 271-380 (387)
101 PRK07657 enoyl-CoA hydratase; 72.0 7.5 0.00016 37.8 5.5 54 31-84 35-109 (260)
102 PRK06023 enoyl-CoA hydratase; 71.5 10 0.00022 36.7 6.4 54 31-84 37-109 (251)
103 PRK09076 enoyl-CoA hydratase; 71.2 12 0.00025 36.5 6.6 53 32-84 34-107 (258)
104 PRK06143 enoyl-CoA hydratase; 71.0 8.9 0.00019 37.4 5.8 53 32-84 39-112 (256)
105 PRK10949 protease 4; Provision 71.0 8.3 0.00018 42.7 6.1 58 27-84 347-408 (618)
106 PRK06144 enoyl-CoA hydratase; 70.3 11 0.00024 36.8 6.3 53 32-84 40-114 (262)
107 TIGR00705 SppA_67K signal pept 70.0 6.4 0.00014 43.3 5.0 56 29-84 331-390 (584)
108 PRK06127 enoyl-CoA hydratase; 69.2 10 0.00022 37.1 5.8 54 31-84 42-118 (269)
109 TIGR00705 SppA_67K signal pept 69.0 11 0.00024 41.4 6.6 87 30-121 79-181 (584)
110 PRK05809 3-hydroxybutyryl-CoA 68.4 10 0.00023 36.8 5.7 53 32-84 36-109 (260)
111 TIGR01929 menB naphthoate synt 67.4 14 0.0003 36.0 6.3 54 31-84 34-109 (259)
112 KOG1680 Enoyl-CoA hydratase [L 66.7 6.9 0.00015 38.9 3.9 52 31-82 68-137 (290)
113 PLN02600 enoyl-CoA hydratase 66.6 12 0.00026 36.3 5.6 53 32-84 27-100 (251)
114 TIGR03210 badI 2-ketocyclohexa 65.5 18 0.00038 35.2 6.6 53 32-84 34-106 (256)
115 PRK08138 enoyl-CoA hydratase; 65.2 18 0.00038 35.3 6.5 53 32-84 40-110 (261)
116 cd06558 crotonase-like Crotona 64.3 20 0.00043 32.7 6.4 54 31-84 30-105 (195)
117 TIGR03820 lys_2_3_AblA lysine- 64.1 69 0.0015 33.9 11.0 121 6-147 147-280 (417)
118 PRK07396 dihydroxynaphthoic ac 63.9 19 0.00042 35.3 6.6 53 32-84 45-119 (273)
119 COG1024 CaiD Enoyl-CoA hydrata 63.5 18 0.00039 35.1 6.3 54 31-84 36-110 (257)
120 PRK08252 enoyl-CoA hydratase; 63.4 17 0.00037 35.2 6.0 52 32-84 35-103 (254)
121 PRK06072 enoyl-CoA hydratase; 62.9 15 0.00033 35.5 5.6 54 31-84 31-101 (248)
122 PRK05995 enoyl-CoA hydratase; 61.9 23 0.00049 34.5 6.6 53 32-84 36-111 (262)
123 PRK09674 enoyl-CoA hydratase-i 61.6 22 0.00048 34.5 6.5 53 32-84 34-104 (255)
124 TIGR03189 dienoyl_CoA_hyt cycl 61.4 20 0.00044 34.8 6.1 53 32-84 32-101 (251)
125 PRK05870 enoyl-CoA hydratase; 61.4 19 0.00041 34.8 6.0 53 32-84 35-107 (249)
126 PRK05864 enoyl-CoA hydratase; 60.3 25 0.00053 34.6 6.6 23 32-54 42-64 (276)
127 PRK07509 enoyl-CoA hydratase; 60.3 13 0.00029 36.0 4.7 24 32-55 35-58 (262)
128 PRK07658 enoyl-CoA hydratase; 59.7 25 0.00055 34.0 6.5 53 32-84 33-106 (257)
129 PRK05869 enoyl-CoA hydratase; 59.6 28 0.0006 33.2 6.6 54 31-84 38-111 (222)
130 PRK07938 enoyl-CoA hydratase; 59.4 25 0.00055 34.0 6.4 54 31-84 32-106 (249)
131 PRK07799 enoyl-CoA hydratase; 59.4 22 0.00048 34.6 6.1 54 31-84 36-112 (263)
132 PRK06688 enoyl-CoA hydratase; 59.2 24 0.00053 34.1 6.3 54 31-84 36-108 (259)
133 PLN02888 enoyl-CoA hydratase 58.4 23 0.00051 34.6 6.1 54 31-84 41-111 (265)
134 PRK06495 enoyl-CoA hydratase; 58.4 20 0.00043 34.9 5.5 54 31-84 34-109 (257)
135 TIGR03200 dearomat_oah 6-oxocy 58.2 26 0.00056 36.3 6.5 54 31-84 59-136 (360)
136 PRK06091 membrane protein FdrA 58.2 46 0.001 36.4 8.6 88 33-138 398-495 (555)
137 PRK07327 enoyl-CoA hydratase; 58.2 26 0.00057 34.3 6.4 53 32-84 44-118 (268)
138 PRK07110 polyketide biosynthes 57.7 29 0.00063 33.6 6.5 54 31-84 36-106 (249)
139 PRK07511 enoyl-CoA hydratase; 57.7 20 0.00043 34.8 5.4 53 32-84 35-110 (260)
140 TIGR00238 KamA family protein. 57.7 1.2E+02 0.0026 30.9 11.2 61 14-76 158-224 (331)
141 PRK03580 carnitinyl-CoA dehydr 57.2 25 0.00053 34.3 6.0 53 32-84 34-106 (261)
142 PRK08139 enoyl-CoA hydratase; 56.1 31 0.00067 33.8 6.5 54 31-84 42-116 (266)
143 PRK06142 enoyl-CoA hydratase; 55.9 31 0.00068 33.7 6.5 24 31-54 37-60 (272)
144 PRK08321 naphthoate synthase; 55.7 28 0.00061 34.8 6.2 24 31-54 56-79 (302)
145 PRK09245 enoyl-CoA hydratase; 55.5 32 0.00069 33.5 6.4 23 32-54 36-58 (266)
146 PRK06190 enoyl-CoA hydratase; 55.1 31 0.00066 33.7 6.2 53 32-84 36-106 (258)
147 PRK05674 gamma-carboxygeranoyl 54.9 30 0.00065 33.8 6.2 53 32-84 38-113 (265)
148 PLN03214 probable enoyl-CoA hy 54.9 27 0.00058 34.5 5.9 54 31-84 42-119 (278)
149 PLN02664 enoyl-CoA hydratase/d 54.9 33 0.00072 33.7 6.5 23 32-54 40-62 (275)
150 PRK05862 enoyl-CoA hydratase; 54.6 35 0.00076 33.1 6.6 54 31-84 35-106 (257)
151 PLN02921 naphthoate synthase 54.1 30 0.00066 35.2 6.2 53 32-84 99-173 (327)
152 PRK10949 protease 4; Provision 54.0 33 0.00072 38.1 6.9 86 31-121 99-200 (618)
153 PRK08272 enoyl-CoA hydratase; 53.7 21 0.00045 35.7 4.9 23 32-54 42-64 (302)
154 PRK11423 methylmalonyl-CoA dec 53.5 32 0.00068 33.6 6.0 52 32-84 36-108 (261)
155 PF09350 DUF1992: Domain of un 52.9 82 0.0018 24.7 7.1 57 291-348 2-64 (71)
156 PRK07468 enoyl-CoA hydratase; 52.9 39 0.00085 32.9 6.6 53 32-84 37-112 (262)
157 PRK08258 enoyl-CoA hydratase; 52.4 37 0.0008 33.4 6.4 53 32-84 49-125 (277)
158 PRK07827 enoyl-CoA hydratase; 52.1 30 0.00066 33.6 5.7 53 32-84 38-113 (260)
159 PRK06210 enoyl-CoA hydratase; 52.0 23 0.0005 34.6 4.8 24 31-54 37-60 (272)
160 PF00158 Sigma54_activat: Sigm 51.9 22 0.00047 32.5 4.3 110 33-150 12-127 (168)
161 PRK08290 enoyl-CoA hydratase; 51.2 42 0.0009 33.4 6.6 24 32-55 36-59 (288)
162 cd07020 Clp_protease_NfeD_1 No 50.9 38 0.00081 31.3 5.8 52 30-84 16-73 (187)
163 PRK08140 enoyl-CoA hydratase; 49.2 42 0.00091 32.6 6.2 52 32-84 36-111 (262)
164 PF00378 ECH: Enoyl-CoA hydrat 48.9 23 0.0005 33.9 4.2 54 31-84 29-102 (245)
165 PLN02157 3-hydroxyisobutyryl-C 48.6 43 0.00093 35.2 6.4 53 32-84 69-145 (401)
166 PRK06563 enoyl-CoA hydratase; 48.4 44 0.00096 32.3 6.1 53 32-84 31-104 (255)
167 TIGR02280 PaaB1 phenylacetate 48.4 48 0.0011 32.1 6.4 52 32-84 31-105 (256)
168 PLN02851 3-hydroxyisobutyryl-C 48.3 45 0.00097 35.1 6.5 53 32-84 74-150 (407)
169 PRK10820 DNA-binding transcrip 48.2 39 0.00085 36.5 6.3 109 32-150 216-332 (520)
170 PRK08260 enoyl-CoA hydratase; 48.1 47 0.001 33.0 6.4 24 31-54 35-58 (296)
171 PRK09120 p-hydroxycinnamoyl Co 47.2 53 0.0012 32.3 6.6 53 32-84 40-116 (275)
172 PRK07260 enoyl-CoA hydratase; 46.5 53 0.0012 31.8 6.4 54 31-84 33-110 (255)
173 PRK07854 enoyl-CoA hydratase; 46.5 55 0.0012 31.5 6.5 52 32-84 32-98 (243)
174 PRK05617 3-hydroxyisobutyryl-C 46.3 46 0.001 34.0 6.2 53 32-84 35-112 (342)
175 COG0447 MenB Dihydroxynaphthoi 46.0 37 0.0008 32.9 4.9 84 27-121 43-156 (282)
176 PLN03085 nucleobase:cation sym 44.6 1.3E+02 0.0028 28.9 8.3 59 291-349 93-155 (221)
177 cd07021 Clp_protease_NfeD_like 44.6 50 0.0011 30.5 5.6 50 32-84 18-70 (178)
178 PLN02874 3-hydroxyisobutyryl-C 44.5 34 0.00074 35.5 4.9 53 32-84 43-117 (379)
179 PF08503 DapH_N: Tetrahydrodip 44.4 44 0.00095 27.3 4.5 54 60-117 4-60 (83)
180 PRK08259 enoyl-CoA hydratase; 43.4 41 0.00089 32.6 5.1 54 31-84 34-105 (254)
181 PRK05981 enoyl-CoA hydratase; 42.0 73 0.0016 31.0 6.6 53 32-84 36-115 (266)
182 cd07013 S14_ClpP Caseinolytic 41.2 53 0.0011 29.7 5.1 54 29-84 14-70 (162)
183 PLN02988 3-hydroxyisobutyryl-C 39.6 72 0.0016 33.2 6.4 53 32-84 41-117 (381)
184 PRK10203 hypothetical protein; 39.4 1.8E+02 0.004 25.4 7.8 57 291-347 8-68 (122)
185 PRK08788 enoyl-CoA hydratase; 39.4 64 0.0014 32.2 5.8 23 32-54 48-75 (287)
186 PF02887 PK_C: Pyruvate kinase 38.9 1.1E+02 0.0024 25.7 6.5 85 34-148 6-93 (117)
187 PF03709 OKR_DC_1_N: Orn/Lys/A 36.5 1.4E+02 0.003 25.3 6.7 54 29-84 23-79 (115)
188 PRK11730 fadB multifunctional 35.3 69 0.0015 36.1 5.9 52 32-83 39-113 (715)
189 TIGR02990 ectoine_eutA ectoine 34.9 98 0.0021 30.1 6.1 74 2-78 134-212 (239)
190 PRK07659 enoyl-CoA hydratase; 34.7 76 0.0016 30.8 5.4 52 32-84 38-110 (260)
191 COG1221 PspF Transcriptional r 33.6 53 0.0012 34.5 4.3 117 31-152 86-209 (403)
192 PLN02267 enoyl-CoA hydratase/i 33.1 1E+02 0.0023 29.6 6.0 54 31-84 30-106 (239)
193 TIGR02437 FadB fatty oxidation 32.7 78 0.0017 35.8 5.7 53 31-83 38-113 (714)
194 COG1509 KamA Lysine 2,3-aminom 31.9 2.5E+02 0.0054 29.2 8.6 110 19-147 162-284 (369)
195 cd07016 S14_ClpP_1 Caseinolyti 31.6 82 0.0018 28.0 4.7 50 30-84 18-70 (160)
196 COG1157 FliI Flagellar biosynt 29.6 1.2E+02 0.0027 32.0 6.1 66 11-84 159-230 (441)
197 PF01972 SDH_sah: Serine dehyd 27.7 3.8E+02 0.0083 26.9 8.8 105 31-140 76-197 (285)
198 KOG2617 Citrate synthase [Ener 26.8 3.1E+02 0.0067 29.0 8.3 58 204-266 108-167 (458)
199 cd03376 TPP_PFOR_porB_like Thi 25.7 3.4E+02 0.0073 26.1 8.1 109 29-138 65-189 (235)
200 KOG1681 Enoyl-CoA isomerase [L 24.4 66 0.0014 31.4 2.8 23 31-53 53-75 (292)
201 TIGR03222 benzo_boxC benzoyl-C 24.2 1.6E+02 0.0035 32.3 6.1 24 31-54 52-76 (546)
202 cd01460 vWA_midasin VWA_Midasi 24.1 7.1E+02 0.015 24.6 10.7 129 4-140 88-260 (266)
203 PF01990 ATP-synt_F: ATP synth 23.8 1.6E+02 0.0034 24.0 4.7 53 30-84 28-80 (95)
204 PRK11154 fadJ multifunctional 23.7 1.4E+02 0.003 33.7 5.7 54 31-84 38-113 (708)
205 TIGR03222 benzo_boxC benzoyl-C 23.4 2E+02 0.0043 31.6 6.6 53 32-84 303-378 (546)
206 PRK14095 pgi glucose-6-phospha 22.9 1.3E+02 0.0029 32.8 5.1 50 30-79 189-246 (533)
207 TIGR03821 AblA_like_1 lysine-2 22.4 8.1E+02 0.018 24.7 13.0 34 14-47 141-176 (321)
208 TIGR02441 fa_ox_alpha_mit fatt 22.3 1.9E+02 0.0042 32.8 6.5 53 31-83 45-119 (737)
209 PRK08150 enoyl-CoA hydratase; 21.6 2.2E+02 0.0047 27.6 6.0 51 32-84 34-104 (255)
210 COG0055 AtpD F0F1-type ATP syn 21.5 4.2E+02 0.0091 28.0 8.0 76 1-80 163-248 (468)
211 PRK08184 benzoyl-CoA-dihydrodi 21.4 1.8E+02 0.0039 31.9 5.8 23 32-54 307-330 (550)
212 PRK08184 benzoyl-CoA-dihydrodi 20.3 2.4E+02 0.0053 30.9 6.5 23 32-54 57-80 (550)
No 1
>PLN02522 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=8.4e-101 Score=812.88 Aligned_cols=430 Identities=93% Similarity=1.443 Sum_probs=412.4
Q ss_pred ChHHHHHHHHhcCCCeeEEEEecCCccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHHHHHHHcCCCCCCEEEEec
Q 014132 1 MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVS 80 (430)
Q Consensus 1 ~~~ei~~~~~~~g~G~S~~i~~Ggd~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~a~~~~~~~~~KPvv~~~~ 80 (430)
|++|+.+++.++|+|+|++||+|||+++|++|.|+|++|.+||+||+|++|+|+++..|++.++++++...+||||+||+
T Consensus 179 L~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e~~f~ea~~~a~~~KPVVa~ka 258 (608)
T PLN02522 179 MSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEYSLVEALKQGKVSKPVVAWVS 258 (608)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecCchhHHHHHHHHHHhcCCCCEEEEec
Confidence 58999999999999999999999999999999999999999999999999999999999999999986457899999999
Q ss_pred CCcccccccccccccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhh
Q 014132 81 GTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDL 160 (430)
Q Consensus 81 G~~~~~~p~g~~~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e~~~~~~~~~~ 160 (430)
|++++.+|++++||||||+++...+++++|.++|+++|+.++++++||+++++++|++|++.|.+.|.+|..+|++|+|.
T Consensus 259 Grsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv~vv~s~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (608)
T PLN02522 259 GTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAIVPTSFEALEAAIKETFEKLVEEGKIIPVKEVTPPQIPEDL 338 (608)
T ss_pred cCCCccCccccccccccccccCCCccHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHHHHhCCceeecCCCCCCCCCcch
Confidence 99995445788899999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcchhhHHHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCc
Q 014132 161 NTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVS 240 (430)
Q Consensus 161 ~~~~l~ak~p~i~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~S 240 (430)
++++.++++++-.+|+++||+.+++++.++|+++++||++.+||++++++||+|+.|++.++++||++|||+||||+|+|
T Consensus 339 ~~~~~~~~~~~~~~~~t~I~~~~~~~~~~rG~~i~dlig~~~~f~~~~~ll~~g~~p~~~~~~~ld~~Lvl~ADHG~~aS 418 (608)
T PLN02522 339 NSAIKSGKVRAPTHIVSTISDDRGEEPCYAGVPMSSIIEKDYGVGDVISLLWFKRSLPRYCTKFIEMCIMLCADHGPCVS 418 (608)
T ss_pred HHHHhCCceecccceEEEeecCCCCeeEECCccHHHHhccCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCcc
Confidence 99999999999999999999999999999999999999987799999999999999999999999999999999999999
Q ss_pred chhHHHHhhccCCChHHHHHHhhhccCCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCcH
Q 014132 241 GAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDK 320 (430)
Q Consensus 241 t~~aar~~aSt~a~~~~av~Agl~a~Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~~DP 320 (430)
|+|++|+++||++|+|+||+||++++||+||||++.|++||+++.+.+.+++++|+++++++++|||||||+|+.+++||
T Consensus 419 t~~aarv~AStg~dl~savaaGl~alGp~hGGA~e~a~~~l~ei~~~~~~~~~~V~~~~~~~~~IpGFGHrvy~~~~~Dp 498 (608)
T PLN02522 419 GAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLTPYEFVEGMKKKGIRVPGIGHRIKSRDNRDK 498 (608)
T ss_pred HHHHHHHhhccCCcHHHHHHHHHHhcCCcccchHHHHHHHHHHHhccccCHHHHHHHHHhCCCccccCCCCCCCCCCCCh
Confidence 97799999999999999999999999999999999999999999876458999999999999999999999997778999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcchhhhhhh
Q 014132 321 RVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLAR 400 (430)
Q Consensus 321 Ra~~L~~~~~~~~~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R 400 (430)
|+++|++++++++..++++++++++|+++.+++++|+||||||+|+++++||+|.+|||++|++|++.++.++++|++||
T Consensus 499 Ra~~L~~~~~~~~~~~~~~~~a~~vE~~~~~~~k~L~~NVDga~a~i~~~lg~p~~~ft~~e~~~~~~~~~~~~lF~l~R 578 (608)
T PLN02522 499 RVELLQKYARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEIDEIVEIGYLNGLFVLAR 578 (608)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHhhccCCCCcCcHhHHHHHHHHcCCCcccCccccccccccccccceEEEeeh
Confidence 99999999999988899999999999987666799999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHhhhhcCCCCCCCCcCcccCC
Q 014132 401 SIGLIGHTFDQKRLKQPLYRHPWEDVLYTK 430 (430)
Q Consensus 401 ~~GwiAH~~Eq~~~~~P~~r~~~~~~~Y~~ 430 (430)
++||+||++||+++.+|++|++||+|.|+|
T Consensus 579 ~~GwiAH~~Eq~~~~~~~~r~~~~~i~y~~ 608 (608)
T PLN02522 579 SIGLIGHTFDQKRLKQPLYRHPWEDVLYTK 608 (608)
T ss_pred HHHHHHHHHHHHHhhCCcccCchhhccccC
Confidence 999999999999999999999999999986
No 2
>COG0372 GltA Citrate synthase [Energy production and conversion]
Probab=100.00 E-value=2.3e-63 Score=504.20 Aligned_cols=334 Identities=23% Similarity=0.301 Sum_probs=259.9
Q ss_pred eEEEEecC-CccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHHHHHHH----cCCCCCCEEEEecCCccccccccc
Q 014132 17 YEGIAIGG-DVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALK----QGKVNKPVVAWVSGTCARLFKSEV 91 (430)
Q Consensus 17 S~~i~~Gg-d~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~a~~~~----~~~~~KPvv~~~~G~~~~~~p~g~ 91 (430)
|..-+.+| -.+.|.++.|+.+. .+-.+.-.++++||.|...| ..++.+ .+..+.-+.-++-+. |...
T Consensus 31 s~id~~~g~L~yrGy~i~dla~~-~~feev~~LLl~G~lPt~~e--l~~~~~~~~~~~~~~~~~~~~~~~~-----p~~~ 102 (390)
T COG0372 31 SYIDGDGGILRYRGYDIEDLAEK-SSFEEVAYLLLYGELPTKAE--LAAFFAKLAARRTLPEQVIRLLESL-----PRDA 102 (390)
T ss_pred eEecCCCceEEECCccHHHHHhh-cCHHHHHHHHHcCcCCChHH--HHHHHHHHHHhcCccHHHHHHHHhC-----CCCc
Confidence 33334444 46889999999997 77788888899999998776 333332 111111111111111 1010
Q ss_pred ccccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhHHHHHhcchhh
Q 014132 92 QFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRA 171 (430)
Q Consensus 92 ~~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~l~ak~p~ 171 (430)
|.-+ .....-..+ +.+++...+..+ ....+.|++|++|+
T Consensus 103 ---hpm~-----------------------------~l~~~vs~l------~~~~~~~~~~~~---~~~~a~rlia~~pt 141 (390)
T COG0372 103 ---HPMA-----------------------------VLRTAVSAL------SAFYPDKLDLND---RREAALRLIAKLPT 141 (390)
T ss_pred ---CcHH-----------------------------HHHHHHHHh------ccccccccccch---hHHHHHHHHHHhhH
Confidence 2211 111111111 222332222222 45568899999999
Q ss_pred HHHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCc-hhHHHHHHHHHHHhccCCCCCcchhHHHHhhc
Q 014132 172 PTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLP-RYCTQFIEICIMLCADHGPCVSGAHNTIVTAR 250 (430)
Q Consensus 172 i~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~-~~~~~~l~~~lvl~aDHg~~~St~~aar~~aS 250 (430)
|++.+|| ...|++++.+..++++ .+||++|+ ++..|+ +.++++||++||||||||+|+|| |++||++|
T Consensus 142 i~a~~yr--~~~g~~~i~p~~~~s~-------a~nfL~ml-~g~~p~~~~~~~a~d~~LiL~ADHe~NAST-ftarvvaS 210 (390)
T COG0372 142 IAAAVYR--YSRGEPPIAPDPDLSY-------AENFLYML-FGEPPSPPVEARAMDRALILHADHELNAST-FTARVVAS 210 (390)
T ss_pred HHHHHHH--HhcCCCCccCCCCccH-------HHHHHHHH-cCCCCCcHHHHHHHHHHHHHHhccCCCcHH-HHHHHHHh
Confidence 9999999 5678888888888766 55566555 888888 48999999999999999999999 99999999
Q ss_pred cCCChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCcHHHHHHHHHH
Q 014132 251 AGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFA 329 (430)
Q Consensus 251 t~a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~~DPRa~~L~~~~ 329 (430)
|++|+|+|++|||+++ ||+||||||.|++||+++.+..+++++||++.+++|++|||||||||| ++|||+++|++++
T Consensus 211 T~sd~ys~i~agi~aL~GPlHGGAne~v~~ml~ei~~~~~~~~~~v~~~l~~~~~imGFGHRVYk--~~DPRa~~lk~~a 288 (390)
T COG0372 211 TGSDLYACIAAGIGALKGPLHGGANEAVMKMLEEIGSSGESAEAYVRKALDRKERIMGFGHRVYK--NYDPRAKVLKELA 288 (390)
T ss_pred cCCcHHHHHHHHHHHcCCCccCChHHHHHHHHHHHcccchhHHHHHHHHHhCCCCcCCCCCCCCC--CCCchHHHHHHHH
Confidence 9999999999999999 999999999999999999977545999999999999999999999998 5899999999999
Q ss_pred HHhCC---CChHHHHHHHHHHHHhhc---cCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcchhhhhhhhhh
Q 014132 330 RTHFP---SVKYMEYAVQVETYTLSK---ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIG 403 (430)
Q Consensus 330 ~~~~~---~~~~~~~a~~~e~~~~~~---~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R~~G 403 (430)
+++.. +.++++++.++|+.+.++ .|+++||||||+|++|..||||.+|||| ||++||++|
T Consensus 289 ~~l~~~~g~~~~~~~a~~~e~~~l~~~~~~k~l~PNvDfysg~v~~~lGiP~~~fT~--------------lFaiaR~~G 354 (390)
T COG0372 289 EKLGKELGDLKLYEIAEELEEIALEDLGFEKKLYPNVDFYSGIVYRALGIPTDMFTP--------------LFAIARTVG 354 (390)
T ss_pred HHHHhhcCchhHHHHHHHHHHHHHHhhhcccCCCCccccchHHHHHHcCCCHHhhhh--------------hhhhhhHHH
Confidence 99853 347999999999998652 6999999999999999999999999998 999999999
Q ss_pred hhhhHHHhhhhcCCCCCCCCcCc
Q 014132 404 LIGHTFDQKRLKQPLYRHPWEDV 426 (430)
Q Consensus 404 wiAH~~Eq~~~~~P~~r~~~~~~ 426 (430)
|+|||+||+...++|.||++.-+
T Consensus 355 W~AH~~Eq~~~~~riiRPr~~Y~ 377 (390)
T COG0372 355 WIAHWIEQKEDGNKIIRPRALYT 377 (390)
T ss_pred HHHHHHHHHhccCCccCChhhhc
Confidence 99999999977567888866544
No 3
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains three Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3 which are involved in the glyoxylate cycle. AthCYS1, in addition to a peroxisomal targeting sequence, has a predicted secretory signal peptide; it may be targeted to both the secretory pathway and the peroxisomes and is thought to be located in the extracellular matrix. AthCSY1 is expr
Probab=100.00 E-value=2.5e-61 Score=494.54 Aligned_cols=341 Identities=18% Similarity=0.213 Sum_probs=262.8
Q ss_pred eEEEEecCC-ccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHH-HHHHH-cCCCCCCEEEEecCCccccccccccc
Q 014132 17 YEGIAIGGD-VFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL-VEALK-QGKVNKPVVAWVSGTCARLFKSEVQF 93 (430)
Q Consensus 17 S~~i~~Ggd-~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~-a~~~~-~~~~~KPvv~~~~G~~~~~~p~g~~~ 93 (430)
|..-|-.|. .|+|.++.|+.+.. .-+++-..+++||.|..+|.+. .+-++ .+..+..|+.++-.. |..
T Consensus 40 s~iDg~~G~L~YRGy~I~dLa~~~-~feEv~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~-----p~~--- 110 (410)
T cd06115 40 SYIDGDKGILRYRGYPIEELAEKS-TFLEVAYLLIYGNLPTKSQLSDWEFAVSQHTAVPTGVLDMIKSF-----PHD--- 110 (410)
T ss_pred eeEeCCCCeEEECCccHHHHHhcC-CHHHHHHHHHcCCCcCHHHHHHHHHHHHHccCCCHHHHHHHHhC-----CCC---
Confidence 333344444 68999999999842 3456777799999999877543 22222 333444444443222 211
Q ss_pred ccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCCCC------CC-CCCCchhhHHHHHh
Q 014132 94 GHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKE------VT-PPQIPEDLNTAIKS 166 (430)
Q Consensus 94 gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e------~~-~~~~~~~~~~~~l~ 166 (430)
+|...+. ..+-.+| +.++|+.+ +. .......++++||+
T Consensus 111 ~hPM~~L-----------------------------~~~vs~l------~~~~~~~~~~~~~~~~~~~~~~~~~~a~rli 155 (410)
T cd06115 111 AHPMGML-----------------------------VSAISAL------SAFHPEANPALAGQDIYKNKQVRDKQIVRIL 155 (410)
T ss_pred CCHHHHH-----------------------------HHHHHHH------hccCccccccccccccccCHHHHHHHHHHHH
Confidence 1332222 1111111 12233221 10 11122456789999
Q ss_pred cchhhHHHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCC-----CCchhHHHHHHHHHHHhccCCCCCcc
Q 014132 167 GKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKR-----SLPRYCTQFIEICIMLCADHGPCVSG 241 (430)
Q Consensus 167 ak~p~i~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~-----~~~~~~~~~l~~~lvl~aDHg~~~St 241 (430)
||+|+|++++|| ++.|++++.|+.++++ .+||++|| ++. +|++.++++||++||||||||+|+||
T Consensus 156 A~~p~i~A~~~r--~~~g~~~~~p~~~ls~-------a~NFl~Ml-~g~~~~~~~p~~~~~~~l~~~liL~ADH~~naST 225 (410)
T cd06115 156 GKAPTIAAAAYR--RRAGRPPNLPSQDLSY-------TENFLYML-DSLGERKYKPNPRLARALDILFILHAEHEMNCST 225 (410)
T ss_pred HHHHHHHHHHHH--HHcCCCCcCCCCCCCH-------HHHHHHHh-cCCCCcCCCCCHHHHHHHHHHHHHhhccCCCchH
Confidence 999999999999 5678889999988877 78888877 565 68889999999999999999999999
Q ss_pred hhHHHHhhccCCChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCcH
Q 014132 242 AHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDK 320 (430)
Q Consensus 242 ~~aar~~aSt~a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~~DP 320 (430)
|++|+++||++|+|+|++||++++ ||+||||+++|++||+++.+. ++++++|++.+++|++|||||||+||. .||
T Consensus 226 -faarv~aSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei~~~-~~~~~~v~~~~~~~~ri~GFGHrvYk~--~DP 301 (410)
T cd06115 226 -AAVRHLASSGVDVYTAVAGAVGALYGPLHGGANEAVLRMLAEIGTV-ENIPAFIEGVKNRKRKLSGFGHRVYKN--YDP 301 (410)
T ss_pred -HHHHHHHhcCCCHHHHHHHHHhhccCCcccchHHHHHHHHHHhCCh-HHHHHHHHHHHhcCCcccCCCCCCCCC--CCc
Confidence 999999999999999999999998 999999999999999999876 589999999999999999999999984 699
Q ss_pred HHHHHHHHHHHhC---CCChHHHHHHHHHHHHhhc----cCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcc
Q 014132 321 RVELLQKFARTHF---PSVKYMEYAVQVETYTLSK----ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLN 393 (430)
Q Consensus 321 Ra~~L~~~~~~~~---~~~~~~~~a~~~e~~~~~~----~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~ 393 (430)
|+++|+++++++. ..++++++++++|+++.++ .|+++||||||+|++++.||||.++||+
T Consensus 302 Ra~~L~~~~~~l~~~~~~~~~~~~a~~~e~~~~~~~~~~~k~l~pNVD~ysa~l~~~lG~p~~~~t~------------- 368 (410)
T cd06115 302 RAKIIKKLADEVFEIVGKDPLIEIAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTDFFPV------------- 368 (410)
T ss_pred cHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhcccCCCCChHHHHHHHHHHcCCChHhhhh-------------
Confidence 9999999999974 3578999999999976543 4899999999999999999999999998
Q ss_pred hhhhhhhhhhhhhhHHHhhhh-----cCCCCCCCCc-CcccC
Q 014132 394 GLFVLARSIGLIGHTFDQKRL-----KQPLYRHPWE-DVLYT 429 (430)
Q Consensus 394 ~lf~~~R~~GwiAH~~Eq~~~-----~~P~~r~~~~-~~~Y~ 429 (430)
+|++||++||+|||+||+.. .||..+|.-. .-.|+
T Consensus 369 -lFa~sR~~Gw~AH~~Eq~~~~~~~i~RP~~~Y~G~~~~~~~ 409 (410)
T cd06115 369 -LFAIPRMAGYLAHWRESLDDPDTKIMRPQQLYTGVWLRHYV 409 (410)
T ss_pred -HHHHHhhhhHHHHHHHHHhCCCCcccCcccccCCCCCCCCC
Confidence 99999999999999999843 4666655332 34443
No 4
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group is similar to gram-negative Escherichia coli (Ec) CS (type II, gltA) and Arabidopsis thaliana (Ath) peroxisomal (Per) CS. However EcCS and AthPerCS are not found in this group. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers w
Probab=100.00 E-value=3.1e-61 Score=491.02 Aligned_cols=334 Identities=19% Similarity=0.250 Sum_probs=260.8
Q ss_pred eEEEEecCC-ccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHH-H-HHHHcCCCCCCEEEEecCCccccccccccc
Q 014132 17 YEGIAIGGD-VFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL-V-EALKQGKVNKPVVAWVSGTCARLFKSEVQF 93 (430)
Q Consensus 17 S~~i~~Ggd-~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~-a-~~~~~~~~~KPvv~~~~G~~~~~~p~g~~~ 93 (430)
|..=|-.|. .|+|.++.|+.+.. .-+++-..+++||.|..+|.+. . ++.+.+..+..|+.++-.. |..
T Consensus 20 s~iDg~~G~L~YRGy~I~dL~~~~-~feEv~yLLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~l~~~-----p~~--- 90 (384)
T cd06116 20 TYIDGEKGILRYRGYPIEQLAEQS-SYLEVAYLLLHGELPTKERLAQWVYDITRHTMTHENLKKFMDGF-----RYD--- 90 (384)
T ss_pred eeEeCCCCeEEECCccHHHHhccC-CHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHhc-----CcC---
Confidence 333344445 68999999999842 3455777799999999877543 2 2323333444455444222 211
Q ss_pred ccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhHHHHHhcchhhHH
Q 014132 94 GHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPT 173 (430)
Q Consensus 94 gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~l~ak~p~i~ 173 (430)
+|.-.+. ..+-.+ ++.++|..++.........+++||+||+|+|+
T Consensus 91 ~hPM~~L-----------------------------~~~vs~------l~~~~~~~~~~~~~~~~~~~~~rliA~~p~i~ 135 (384)
T cd06116 91 AHPMGIL-----------------------------ISSVAA------LSTFYPEAKNIGDEEQRNKQIIRLIGKMPTIA 135 (384)
T ss_pred CCcHHHH-----------------------------HHHHHh------hhhcCccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 1332222 111111 12233333332222334567799999999999
Q ss_pred HHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCC-----CCchhHHHHHHHHHHHhccCCCCCcchhHHHHh
Q 014132 174 HIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKR-----SLPRYCTQFIEICIMLCADHGPCVSGAHNTIVT 248 (430)
Q Consensus 174 a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~-----~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~ 248 (430)
|++|| ++.|++++.|+.++++ .+||++|+ ++. +|+++++++||++||||||||+|+|| |++|++
T Consensus 136 A~~~r--~~~g~~~~~p~~~ls~-------a~Nfl~Ml-~g~~~~~~~p~~~~~~~l~~~LiL~ADH~~n~ST-faarv~ 204 (384)
T cd06116 136 AFAYR--HRLGLPYVLPDNDLSY-------TGNFLSML-FKMTEPKYEPNPVLAKALDVLFILHADHEQNCST-SAMRSV 204 (384)
T ss_pred HHHHH--HHcCCCccCCCCCCCH-------HHHHHHHh-CCCCCCCCCCCHHHHHHHHHHHhhhccCCCCchh-HHHhhh
Confidence 99999 5678889999999877 78888877 565 68889999999999999999999999 999999
Q ss_pred hccCCChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCcHHHHHHHH
Q 014132 249 ARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQK 327 (430)
Q Consensus 249 aSt~a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~~DPRa~~L~~ 327 (430)
+||++|+|+|++||++++ ||+||||+++|++||+++.+. ++++++|++.++++++|||||||+|+ +.|||+++|++
T Consensus 205 aSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei~~~-~~~~~~v~~~~~~~~ri~GFGHrvyk--~~DPRa~~L~~ 281 (384)
T cd06116 205 GSSRADPYTAVAAAVAALYGPLHGGANEAVLRMLQQIGSP-KNIPDFIETVKQGKERLMGFGHRVYK--NYDPRARIIKK 281 (384)
T ss_pred hccCCCHHHHHHHHHHhccCCcccchHHHHHHHHHHhCCh-HHHHHHHHHHHhcCCcccCCCCCCCC--CCChHHHHHHH
Confidence 999999999999999997 999999999999999999876 58999999999999999999999997 47999999999
Q ss_pred HHHHhC---CCChHHHHHHHHHHHHhhc----cCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcchhhhhhh
Q 014132 328 FARTHF---PSVKYMEYAVQVETYTLSK----ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLAR 400 (430)
Q Consensus 328 ~~~~~~---~~~~~~~~a~~~e~~~~~~----~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R 400 (430)
+++++. ..++++++++++|+++.++ .|+++||||||+|+++++||||.++||+ +|++||
T Consensus 282 ~~~~l~~~~~~~~~~~ia~~~e~~~~~~~~~~~k~l~pNvD~ysa~l~~~lGip~~~~t~--------------lf~isR 347 (384)
T cd06116 282 IADEVFEATGRNPLLDIAVELEKIALEDEYFISRKLYPNVDFYSGLIYQALGFPTEAFTV--------------LFAIPR 347 (384)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHhCCChhhccc--------------hhhhhh
Confidence 998873 3578999999999966443 5999999999999999999999999998 999999
Q ss_pred hhhhhhhHHHhhhh-----cCCCCCCC
Q 014132 401 SIGLIGHTFDQKRL-----KQPLYRHP 422 (430)
Q Consensus 401 ~~GwiAH~~Eq~~~-----~~P~~r~~ 422 (430)
++||+|||+||++. .||..+|.
T Consensus 348 ~~Gw~AH~~Eq~~~~~~~i~RP~~~Y~ 374 (384)
T cd06116 348 TSGWLAQWIEMLRDPEQKIARPRQVYT 374 (384)
T ss_pred hchHHHHHHHHHhCcCCcccCcccccc
Confidence 99999999999843 45665553
No 5
>PRK14035 citrate synthase; Provisional
Probab=100.00 E-value=3.6e-60 Score=481.25 Aligned_cols=333 Identities=17% Similarity=0.218 Sum_probs=257.4
Q ss_pred CCccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHH-HHHHH-cCCCCCCEEEEecCCccccccccccccccccccc
Q 014132 24 GDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL-VEALK-QGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSG 101 (430)
Q Consensus 24 gd~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~-a~~~~-~~~~~KPvv~~~~G~~~~~~p~g~~~gHagai~~ 101 (430)
+=.|+|.++.|..+. ..-+++-..+++||.|...|.+. .+.+. .+..+..|+.++..... .. +|...+
T Consensus 24 ~L~YRGy~i~dLa~~-~~Feeva~LLl~G~lP~~~el~~f~~~L~~~~~lp~~v~~~i~~~~~----~~---~hpm~~-- 93 (371)
T PRK14035 24 QLTYAGYDIDDLAEN-ASFEEVIFLLWNYRLPTEEELAHLKGKLRKYMTLNDRVYQHFEEYST----DH---VHPMTA-- 93 (371)
T ss_pred EeEECCccHHHHHhc-CCHHHHHHHHHCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhcCC----cC---CCHHHH--
Confidence 345799999999973 34456666799999998766433 22232 22223333322211100 01 122111
Q ss_pred CCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhHHHHHhcchhhHHHHHHhhcc
Q 014132 102 GEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISD 181 (430)
Q Consensus 102 ~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~l~ak~p~i~a~~~~i~~ 181 (430)
+...+. .++.++|..++..++ ...+++++++||+|+|++++|+ +
T Consensus 94 ------------------------------l~~~vs---~l~~~~~~~~~~~~~-~~~~~a~rliA~~p~i~A~~~r--~ 137 (371)
T PRK14035 94 ------------------------------LRTSVS---YLAHFDPDAEEESDE-ARYERAIRIQAKVASLVTAFAR--V 137 (371)
T ss_pred ------------------------------HHHHHH---HHhccCcccccCCHH-HHHHHHHHHHHHHHHHHHHHHH--H
Confidence 111111 123444544433333 3356888999999999999999 5
Q ss_pred CCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhccCCChHHHHHH
Q 014132 182 DRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVS 261 (430)
Q Consensus 182 ~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aSt~a~~~~av~A 261 (430)
+.|++++.|+.++++ .+||++|+ +|++|++.++++||++||||||||+|+|| |++|+++||++|+|+|++|
T Consensus 138 ~~g~~~~~p~~~ls~-------~~nfl~ml-~g~~p~~~~~~~l~~~LvL~ADHg~naST-~aaRv~aSt~ad~~sav~A 208 (371)
T PRK14035 138 RQGKEPLKPRPDLSY-------AANFLYML-RGELPTDIEVEAFNKALVLHADHELNAST-FTARCAVSSLSDMYSGVVA 208 (371)
T ss_pred hCCCCCCCCCCCCCH-------HHHHHHHh-ccCCCCHHHHHHHHHHHHHhccCCCCchH-HHHHHHHhcCCcHHHHHHH
Confidence 678888888888755 45555555 78899999999999999999999999999 9999999999999999999
Q ss_pred hhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhC---CCCh
Q 014132 262 GLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHF---PSVK 337 (430)
Q Consensus 262 gl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~ 337 (430)
|++++ ||+||||++.|++||+++.+. +++++||++.+++|++|||||||+|+ +.|||+++|+++++++. ..++
T Consensus 209 gi~al~GplHGGA~e~v~~~l~~i~~~-~~~~~~v~~~~~~~~~l~GFGHrvyk--~~DPRa~~L~~~~~~l~~~~~~~~ 285 (371)
T PRK14035 209 AVGSLKGPLHGGANERVMDMLSEIRSI-GDVDAYLDEKFANKEKIMGFGHRVYK--DGDPRAKYLREMSRKITKGTGREE 285 (371)
T ss_pred HHHhccCccccChHHHHHHHHHHhCCh-HHHHHHHHHHHhcCCcccCCCCCCCC--CCCccHHHHHHHHHHHHhhcCCCH
Confidence 99998 999999999999999999876 58999999999999999999999997 47999999999999885 4678
Q ss_pred HHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcchhhhhhhhhhhhhhHHHhhhh---
Q 014132 338 YMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRL--- 414 (430)
Q Consensus 338 ~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R~~GwiAH~~Eq~~~--- 414 (430)
++++++++++++.+ .++++||||||+|+++++||||.++||+ +|++||++||+|||+||++.
T Consensus 286 ~~~~a~~ie~~~~~-~k~l~pNvD~~s~~l~~~lG~p~~~~t~--------------lf~i~R~~Gw~AH~~Eq~~~~~l 350 (371)
T PRK14035 286 LFEMSVKIEKRMKE-EKGLIPNVDFYSATVYHVMGIPHDLFTP--------------IFAVSRVAGWIAHILEQYKDNRI 350 (371)
T ss_pred HHHHHHHHHHHHHH-hcCCCCChHHHHHHHHHHcCCChHhhhh--------------HHHHHhHHHHHHHHHHHHhcCCc
Confidence 99999999998765 6899999999999999999999999998 99999999999999999853
Q ss_pred cCCCCCCCCc-CcccC
Q 014132 415 KQPLYRHPWE-DVLYT 429 (430)
Q Consensus 415 ~~P~~r~~~~-~~~Y~ 429 (430)
.||..+|.-. ...|+
T Consensus 351 ~RP~~~Y~G~~~~~~~ 366 (371)
T PRK14035 351 MRPRAKYIGETNRKYI 366 (371)
T ss_pred cCCCccccCCCCCCCC
Confidence 3566555333 44443
No 6
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=100.00 E-value=2e-60 Score=480.28 Aligned_cols=235 Identities=23% Similarity=0.285 Sum_probs=212.7
Q ss_pred hhHHHHHhcchhhHHHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCC
Q 014132 159 DLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPC 238 (430)
Q Consensus 159 ~~~~~~l~ak~p~i~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~ 238 (430)
.+++++++|++|+|++++|++ +.|++++.|+.++++ .+||++|+ +|+.|++.++++||++||||||||+|
T Consensus 103 ~~~a~~liA~~p~i~a~~~r~--~~g~~~~~p~~~ls~-------a~nfl~ml-~g~~p~~~~~~~l~~~Lvl~ADHg~n 172 (349)
T cd06109 103 LATALRLLAAAPVITAALLRL--SRGKQPIAPDPSLSH-------AADYLRML-TGEPPSEAHVRALDAYLVTVADHGMN 172 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HcCCCCcCCCCCCCH-------HHHHHHHh-CCCCCChHHHHHHHHHHhHhcccCCC
Confidence 457889999999999999994 568888888888766 56777666 78888889999999999999999999
Q ss_pred CcchhHHHHhhccCCChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 014132 239 VSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDN 317 (430)
Q Consensus 239 ~St~~aar~~aSt~a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~ 317 (430)
+|| |++|+++||++|+|+|++||++++ ||+||||+++|++||+++.+. +++++||++.+++|++|||||||+|+.
T Consensus 173 ~ST-~aaRv~aSt~ad~~savaagi~al~GplHGGA~e~v~~~l~ei~~~-~~~~~~v~~~l~~~~~i~GfGH~vyk~-- 248 (349)
T cd06109 173 AST-FTARVIASTEADLTSAVLGAIGALKGPLHGGAPGPVLDMLDAIGTP-ENAEAWLREALARGERLMGFGHRVYRV-- 248 (349)
T ss_pred chh-hHHHHHhccCCcHHHHHHHHHHhccCCcccChHHHHHHHHHHhCCh-hhHHHHHHHHHHcCCeecCCCCCCCCC--
Confidence 999 999999999999999999999998 999999999999999999876 589999999999999999999999984
Q ss_pred CcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh------ccCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhh
Q 014132 318 RDKRVELLQKFARTHFPSVKYMEYAVQVETYTLS------KANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGY 391 (430)
Q Consensus 318 ~DPRa~~L~~~~~~~~~~~~~~~~a~~~e~~~~~------~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~ 391 (430)
.|||+++|+++++++..+++++++++++|+++.+ ..|+++||||||+|+++++||||.++||+
T Consensus 249 ~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~~~~~~~~~r~l~pNvD~~sg~l~~~lGip~~~~t~----------- 317 (349)
T cd06109 249 RDPRADVLKAAAERLGAPDERLEFAEAVEQAALALLREYKPGRPLETNVEFYTALLLEALGLPREAFTP----------- 317 (349)
T ss_pred CCcCHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhhHHHHHHHhCCChhhhhh-----------
Confidence 6999999999999998889999999999987632 26899999999999999999999999998
Q ss_pred cchhhhhhhhhhhhhhHHHhhhhcCCCCCCC
Q 014132 392 LNGLFVLARSIGLIGHTFDQKRLKQPLYRHP 422 (430)
Q Consensus 392 ~~~lf~~~R~~GwiAH~~Eq~~~~~P~~r~~ 422 (430)
+|++||++||+|||+||++.+ .+.||.
T Consensus 318 ---lF~isR~~Gw~AH~~Eq~~~~-~~~RP~ 344 (349)
T cd06109 318 ---TFAAGRTAGWTAHVLEQARTG-RLIRPQ 344 (349)
T ss_pred ---HHHHHhHHHHHHHHHHHHhcC-CCcCCC
Confidence 999999999999999998644 344553
No 7
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like. 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxaloacetate (OAA) to form 2-methylcitrate and CoA. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with OAA to form citrate and CoA, the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the a
Probab=100.00 E-value=1.4e-60 Score=490.57 Aligned_cols=344 Identities=19% Similarity=0.184 Sum_probs=260.8
Q ss_pred eEEEEecCCccCCCCHHHHHHHhhcC--------CCccEEEEeeccCChhHHHH-HHHHH-cCCCCCCEEEEecCCcccc
Q 014132 17 YEGIAIGGDVFPGSTLSDHILRFNNI--------PQVKMMVVLGELGGRDEYSL-VEALK-QGKVNKPVVAWVSGTCARL 86 (430)
Q Consensus 17 S~~i~~Ggd~i~g~~~~d~l~~l~~D--------p~T~~Ivl~gE~~~~~E~~~-a~~~~-~~~~~KPvv~~~~G~~~~~ 86 (430)
|..=|-+|-.|+|.++.|+.+.+..+ +++-..+++||.|..+|.+. .+.++ .+..+..|+.++-..
T Consensus 51 s~idg~~Gl~YRGy~I~dLa~~~~~~~~~~~f~~Eev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~---- 126 (428)
T cd06106 51 SVLDAEEGIRFHGKTIPECQKELPKAPIGGEMLPESMLWLLLTGKVPTFEQARGLSKELAERGKLPHYIEKLLDSL---- 126 (428)
T ss_pred eEECCCCCeeECCCcHHHHHhhCccccccCCccHHHHHHHHHcCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhC----
Confidence 66666677889999999999987744 34556689999999877543 33333 334555665555333
Q ss_pred cccccccccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCCCCC-CCCCCchhhHHHHH
Q 014132 87 FKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEV-TPPQIPEDLNTAIK 165 (430)
Q Consensus 87 ~p~g~~~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e~-~~~~~~~~~~~~~l 165 (430)
|.. +|...+... -.++|.. .+ -+ ...+ +.+ .++ ..| .+..++++||
T Consensus 127 -p~~---~hPM~~L~~-------~vs~L~~--------~~-~~---~~~y----~~~-----~~~~~~~-~~~~~~~~rL 173 (428)
T cd06106 127 -PKT---LHPMTQLSI-------GVAALNH--------DS-KF---AAAY----EKG-----IKKTEYW-EPTLEDSLNL 173 (428)
T ss_pred -CCC---CCHHHHHHH-------HHHhccc--------cc-hh---hhhc----ccC-----cccccch-HHHHHHHHHH
Confidence 222 243332210 0111110 00 00 0000 111 111 011 1234678999
Q ss_pred hcchhhHHHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCC-CCCcchhH
Q 014132 166 SGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHG-PCVSGAHN 244 (430)
Q Consensus 166 ~ak~p~i~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg-~~~St~~a 244 (430)
+||+|+|+|++||.....+.++.++..++++ .+||++|| |..|++...++||++|||||||| +|+|| |+
T Consensus 174 iAk~ptI~A~~yr~~~g~~~~~~~p~~~ls~-------a~NFL~Ml--g~~p~~~~~~~l~~~LiL~ADHeg~NaST-fa 243 (428)
T cd06106 174 IARLPALAARIYRNVYGEGHGLGKIDPEVDW-------SYNFTSML--GYGDNLDFVDLLRLYIALHGDHEGGNVSA-HT 243 (428)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCCCcCH-------HHHHHHHh--CCCCChHHHHHHHHHHhhhcccCCccchH-HH
Confidence 9999999999999543234466678888877 78888887 66788889999999999999999 89999 99
Q ss_pred HHHhhccCCChHHHHHHhhhcc-CCCccCchHHHHHHHHHH----hc--cCCCHHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 014132 245 TIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDA----YD--RGLSAYEFVESMKKKGIRVPGIGHRIKRGDN 317 (430)
Q Consensus 245 ar~~aSt~a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~----~~--~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~ 317 (430)
+|+++||++|+|+|++||++++ ||+||||+++|++||+++ ++ ..+++++||++.+++|++|||||||||+.
T Consensus 244 arvvaST~ad~ysav~agi~aL~GPlHGGAne~v~~~l~e~~~~ig~~~~~~~~~~~i~~~l~~g~~i~GfGHrvYk~-- 321 (428)
T cd06106 244 THLVGSALSDPYLSYSAGLMGLAGPLHGLAAQEVLRWILEMQKNIGSKATDQDIRDYLWKTLKSGRVVPGYGHAVLRK-- 321 (428)
T ss_pred HHHHhccCCCHHHHHHHHHHhcCCCcccChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcccCCCCCCCCC--
Confidence 9999999999999999999998 999999999999988776 32 12589999999999999999999999984
Q ss_pred CcHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhh------ccCCcccchhhHHHHHHHHhccCC-CCCchhhhHHHHh
Q 014132 318 RDKRVELLQKFARTHF--PSVKYMEYAVQVETYTLS------KANNLVLNVDGAIGSLFLDLLAGS-GMFSKQEIDEIVE 388 (430)
Q Consensus 318 ~DPRa~~L~~~~~~~~--~~~~~~~~a~~~e~~~~~------~~~~l~~Nvd~~~a~l~~~lG~~~-~~ft~~e~~~~~p 388 (430)
.|||+++|+++++++. ..++++++++++++++.+ ..++++||||||+|++++.||||. ++|||
T Consensus 322 ~DPRa~~l~~~~~~l~~~~~~~~~~~a~~ie~~~~~~l~~~~~~~~l~pNVDfysg~v~~~lGip~~~~ft~-------- 393 (428)
T cd06106 322 PDPRFTALMEFAQTRPELENDPVVQLVQKLSEIAPGVLTEHGKTKNPFPNVDAASGVLFYHYGIREFLYYTV-------- 393 (428)
T ss_pred CCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHcCCChhhcchH--------
Confidence 6999999999999875 346899999999986532 358999999999999999999998 78998
Q ss_pred hhhcchhhhhhhhhhhhhhHHHhhhhcCCCCCCCC
Q 014132 389 IGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPW 423 (430)
Q Consensus 389 ~~~~~~lf~~~R~~GwiAH~~Eq~~~~~P~~r~~~ 423 (430)
+|++||++||+||++||+...+||.||..
T Consensus 394 ------lFaisR~~GW~AHi~eq~~~~~~I~RP~s 422 (428)
T cd06106 394 ------IFGVSRALGPLTQLVWDRILGLPIERPKS 422 (428)
T ss_pred ------HHHHHHHHHHHHHHHHHHhCCCCCcCCCc
Confidence 99999999999999999977789999843
No 8
>PRK12351 methylcitrate synthase; Provisional
Probab=100.00 E-value=1.8e-60 Score=484.18 Aligned_cols=333 Identities=18% Similarity=0.169 Sum_probs=253.0
Q ss_pred eeEEEEecC-CccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHH-HHHHH-cCCCCCCEEEEecCCcccccccccc
Q 014132 16 IYEGIAIGG-DVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL-VEALK-QGKVNKPVVAWVSGTCARLFKSEVQ 92 (430)
Q Consensus 16 ~S~~i~~Gg-d~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~-a~~~~-~~~~~KPvv~~~~G~~~~~~p~g~~ 92 (430)
+|..-+..| =.|.|.++.|+.+.. .-+++-..+++||.|...|.+. .+-+. .+..+..|..++... |..
T Consensus 22 is~i~~~~g~L~YRGy~I~dLa~~~-~feeva~LL~~G~LP~~~el~~f~~~L~~~~~lp~~v~~~i~~~-----p~~-- 93 (378)
T PRK12351 22 LCTVGKSGNDLHYRGYDILDLAEHC-EFEEVAHLLVHGKLPTQAELAAYKTKLKALRGLPAAVKTVLEAI-----PAA-- 93 (378)
T ss_pred CeeEecCCCEEEECCccHHHHHhcC-CHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHhC-----Ccc--
Confidence 455545444 458999999999843 3566667799999998776433 22222 222333333332211 111
Q ss_pred cccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhHHHHHhcchhhH
Q 014132 93 FGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAP 172 (430)
Q Consensus 93 ~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~l~ak~p~i 172 (430)
.|.. +++..+-. .++.++|..++...+. ..+++++|+||+|+|
T Consensus 94 -~hPM-----------------------------~~L~~~vs------~l~~~d~~~~~~~~~~-~~~~a~rliA~~p~i 136 (378)
T PRK12351 94 -AHPM-----------------------------DVMRTGVS------VLGCLLPEKEDHNFSG-ARDIADRLLASLGSI 136 (378)
T ss_pred -CCHH-----------------------------HHHHHHHH------hhcccCcccccCChHH-HHHHHHHHHHHHHHH
Confidence 1221 11111111 1234455433333222 245688999999999
Q ss_pred HHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhccC
Q 014132 173 THIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAG 252 (430)
Q Consensus 173 ~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aSt~ 252 (430)
++++||..+ .++++.++..++++ .+||++|+ +|++|++.++++||++||||||||+|+|| |++|+++||+
T Consensus 137 ~a~~~r~~~-~~~~~~p~~~~ls~-------a~Nfl~ml-~g~~p~~~~~~~l~~~LvL~ADH~~naST-~aaRvvaSt~ 206 (378)
T PRK12351 137 LLYWYHYSH-NGRRIEVETDDDSI-------GGHFLHLL-HGKKPSESWVKAMHTSLILYAEHEFNAST-FTARVIAGTG 206 (378)
T ss_pred HHHHHHHHh-CCCccCCCCCcCCH-------HHHHHHHh-cCCCCCHHHHHHHHHHHHHhcccCCchHH-HHHHHHhccC
Confidence 999999543 24454444555655 55666655 78889999999999999999999999999 9999999999
Q ss_pred CChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 014132 253 KDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFART 331 (430)
Q Consensus 253 a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~ 331 (430)
+|+|+|++||++++ ||+||||++.|++||+++.+. ++++++|++.+++|++|||||||+|+ +.|||+++|++++++
T Consensus 207 ad~~sav~agi~aL~GplHGGA~e~v~~ml~~i~~~-~~~~~~v~~~l~~~~~l~GFGHrvyk--~~DPRa~~L~~~~~~ 283 (378)
T PRK12351 207 SDMYSAITGAIGALRGPKHGGANEVAFEIQQRYDTP-DEAEADIRRRVENKEVVIGFGHPVYT--ISDPRNKVIKEVAKK 283 (378)
T ss_pred CCHHHHHHHHHHhccCCccCchHHHHHHHHHHhCCH-HHHHHHHHHHHhCCCccccCCCCCCC--CCCccHHHHHHHHHH
Confidence 99999999999998 999999999999999999876 58999999999999999999999997 469999999999998
Q ss_pred hC---CCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcchhhhhhhhhhhhhhH
Q 014132 332 HF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHT 408 (430)
Q Consensus 332 ~~---~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R~~GwiAH~ 408 (430)
+. ..++++++++++|+++.+ .++++||||||+|+++++||||.++||+ +|++||++||+|||
T Consensus 284 l~~~~~~~~~~~~a~~ie~~~~~-~k~l~pNvD~ysg~l~~~lG~p~~~~t~--------------lF~~sR~~Gw~AH~ 348 (378)
T PRK12351 284 LSKEAGDTKLYDIAERLETVMWE-EKKMFPNLDWFSAVSYHMMGVPTAMFTP--------------LFVISRTTGWAAHV 348 (378)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHH-HhCCCCChHHHHHHHHHHcCCCHHhhhh--------------HHHHHHHHHHHHHH
Confidence 63 457899999999998865 6899999999999999999999999998 99999999999999
Q ss_pred HHhhhhc---CCCCCC
Q 014132 409 FDQKRLK---QPLYRH 421 (430)
Q Consensus 409 ~Eq~~~~---~P~~r~ 421 (430)
+||++.+ ||..+|
T Consensus 349 ~Eq~~~~~~iRP~~~Y 364 (378)
T PRK12351 349 IEQRQDNKIIRPSANY 364 (378)
T ss_pred HHHHhcCCccCCccee
Confidence 9998544 454444
No 9
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of ide
Probab=100.00 E-value=2.6e-60 Score=483.94 Aligned_cols=333 Identities=18% Similarity=0.213 Sum_probs=260.1
Q ss_pred eEEEEecCC-ccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHH-H-HHHHcCCCCCCEEEEecCCccccccccccc
Q 014132 17 YEGIAIGGD-VFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL-V-EALKQGKVNKPVVAWVSGTCARLFKSEVQF 93 (430)
Q Consensus 17 S~~i~~Ggd-~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~-a-~~~~~~~~~KPvv~~~~G~~~~~~p~g~~~ 93 (430)
|..=|-.|. .|.|.++.|+.+. ..-+++-..+++||.|...|.+. . ++.+.+..+..|+.++-.. |..
T Consensus 20 s~iDg~~G~L~YRGy~I~dLa~~-~~feev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~-----p~~--- 90 (382)
T cd06107 20 TYIDGDKGILLYRGYPIEQLAES-STYEEVAYLLLWGELPTQEQYDEFQRRLSEHMMVPESVHRLIQTF-----PRD--- 90 (382)
T ss_pred eeEeCCCCeEEECCccHHHHHhc-CCHHHHHHHHhCCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHhC-----CCC---
Confidence 333334444 6899999999985 34566777799999999877543 2 2333333455555544322 211
Q ss_pred ccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCCCCCC-------CCCCchhhHHHHHh
Q 014132 94 GHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVT-------PPQIPEDLNTAIKS 166 (430)
Q Consensus 94 gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e~~-------~~~~~~~~~~~~l~ 166 (430)
+|.-.+.. + -.+++ +.++|+.++. .......+++++|+
T Consensus 91 ~hPM~~L~----~---~vs~l----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 135 (382)
T cd06107 91 AHPMGILC----A---GLSAL----------------------------SAFYPEAIPAHTGDLYQNNPEVRDKQIIRTL 135 (382)
T ss_pred CCcHHHHH----H---HHHhh----------------------------cccCccccchhhccccccCHHHHHHHHHHHH
Confidence 23332220 0 01111 1222221111 11123356788999
Q ss_pred cchhhHHHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCC-----CCchhHHHHHHHHHHHhccCCCCCcc
Q 014132 167 GKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKR-----SLPRYCTQFIEICIMLCADHGPCVSG 241 (430)
Q Consensus 167 ak~p~i~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~-----~~~~~~~~~l~~~lvl~aDHg~~~St 241 (430)
||+|+|++++|| ++.|++++.|+.++++ .+||++|+ ++. +|+++++++||++||||||||+|+||
T Consensus 136 A~~p~i~A~~yr--~~~g~~~~~P~~~ls~-------a~NFL~Ml-~g~~~~~~~p~~~~~~~l~~~LiL~aDHg~n~ST 205 (382)
T cd06107 136 AKMPTIAAAAYC--HRIGRPFVYPRANLSY-------IENFLYMM-GYVDQEPYEPNPRLARALDRLWILHADHEMNCST 205 (382)
T ss_pred HHHHHHHHHHHH--HhCCCCCCCCCCCCCH-------HHHHHHHh-cCCCcCCCCCCHHHHHHHHHHHHHhcccCCcchh
Confidence 999999999999 5688999999999887 78888887 554 37888999999999999999999999
Q ss_pred hhHHHHhhccCCChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCcH
Q 014132 242 AHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDK 320 (430)
Q Consensus 242 ~~aar~~aSt~a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~~DP 320 (430)
|++|+++||++|+|+|++||++++ ||+||||+++|++||+++.+. ++++++|++.+++|++|||||||+|+ +.||
T Consensus 206 -~aaRv~aSt~ad~~s~v~aai~al~GplHGGA~e~v~~~l~ei~~~-~~~~~~v~~~~~~~~ri~GFGHrvyk--~~DP 281 (382)
T cd06107 206 -SAARHTGSSLADPISCMAAAIAALYGPLHGGANEAALKMLREIGTP-ENVPAFIERVKNGKRRLMGFGHRVYK--NYDP 281 (382)
T ss_pred -HHHHHHHhcCCcHHHHHHHHHhhccCCcccchHHHHHHHHHHhCCh-HHHHHHHHHHHhcCCCcCCCCCCCCC--CCCc
Confidence 999999999999999999999998 999999999999999999876 58999999999999999999999997 4699
Q ss_pred HHHHHHHHHHHhC---CCChHHHHHHHHHHHHhhc----cCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcc
Q 014132 321 RVELLQKFARTHF---PSVKYMEYAVQVETYTLSK----ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLN 393 (430)
Q Consensus 321 Ra~~L~~~~~~~~---~~~~~~~~a~~~e~~~~~~----~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~ 393 (430)
|+++|+++++++. ..++++++++++|+++.++ .|+++||||||+|+++++||||.++||+
T Consensus 282 Ra~~L~~~~~~l~~~~~~~~~~~~a~~ie~~~~~~~~~~~k~l~pNvD~~sa~~~~~lG~p~~~~t~------------- 348 (382)
T cd06107 282 RAKVIREILHEVLTEVEKDPLLKVAMELERIALEDEYFVSRKLYPNVDFYSGFIYKALGFPPEFFTV------------- 348 (382)
T ss_pred cHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhhccCCCCcChHHHHHHHHHHcCCChhhhhH-------------
Confidence 9999999999885 3578999999999976442 5999999999999999999999999998
Q ss_pred hhhhhhhhhhhhhhHHHhhhhc-CCCCCC
Q 014132 394 GLFVLARSIGLIGHTFDQKRLK-QPLYRH 421 (430)
Q Consensus 394 ~lf~~~R~~GwiAH~~Eq~~~~-~P~~r~ 421 (430)
+|++||++||+|||+||+..+ ..+.||
T Consensus 349 -lf~~sR~~Gw~AH~~Eq~~~~~~~i~RP 376 (382)
T cd06107 349 -LFAVARTSGWMAHWREMMEDPLQRIWRP 376 (382)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCCCceeCc
Confidence 999999999999999998654 345555
No 10
>PRK12350 citrate synthase 2; Provisional
Probab=100.00 E-value=1.9e-59 Score=472.03 Aligned_cols=231 Identities=22% Similarity=0.271 Sum_probs=210.8
Q ss_pred hHHHHHhcchhhHHHHHHhhccCCC-CcccccCCCcchhhhccCCHHHHHHHhhhCC---CCchhHHHHHHHHHHHhccC
Q 014132 160 LNTAIKSGKVRAPTHIISTISDDRG-EEPCYAGVPMSSIVEQGYGVGDVISLLWFKR---SLPRYCTQFIEICIMLCADH 235 (430)
Q Consensus 160 ~~~~~l~ak~p~i~a~~~~i~~~~g-~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~---~~~~~~~~~l~~~lvl~aDH 235 (430)
++++|++||+|+|++++|| +++| ++++.|+.++++ .+||++|+ +|. +|++.++++||++|||||||
T Consensus 99 ~~~~rliA~~pti~a~~~r--~~~g~~~~i~p~~~ls~-------a~nfl~ml-~g~~~~~p~~~~~~~ld~~LiL~ADH 168 (353)
T PRK12350 99 TARLDLARASVMALSAVAQ--SARGIGQPAVPQREIDH-------AATILERF-MGRWRGEPDPAHVAALDAYWVSAAEH 168 (353)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHcCCCCCcCCCCCCCH-------HHHHHHHh-ccCccCCCCHHHHHHHHHHHHHhccC
Confidence 3568999999999999999 5678 788889999887 78888877 676 78889999999999999999
Q ss_pred CCCCcchhHHHHhhccCCChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCC
Q 014132 236 GPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKR 314 (430)
Q Consensus 236 g~~~St~~aar~~aSt~a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~ 314 (430)
|+|+|| |++|+++||++|+|+|++||++++ ||+||||++.|++||+++.+. +++++||++++++|++|||||||+||
T Consensus 169 g~naST-faaRv~aSt~adlysav~agi~aL~GplHGGA~e~v~~ml~ei~~~-~~~~~~v~~~l~~~~ri~GFGHrvYk 246 (353)
T PRK12350 169 GMNAST-FTARVIASTGADVAAALSGAIGALSGPLHGGAPARVLPMLDAVERT-GDARGWVKGALDRGERLMGFGHRVYR 246 (353)
T ss_pred CCCcch-HHHHHHhccCCcHHHHHHHHHhhcCCCcccChHHHHHHHHHHhCCh-hhHHHHHHHHHHCCCccccCCCCCCC
Confidence 999999 999999999999999999999998 999999999999999999876 58999999999999999999999998
Q ss_pred CCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhc------cCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHh
Q 014132 315 GDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSK------ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVE 388 (430)
Q Consensus 315 ~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~~e~~~~~~------~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p 388 (430)
. .|||+++|+++++++. ++++++++++|+++.+. .|+++||||||+|+++++||||.++||+
T Consensus 247 ~--~DPRa~~L~~~~~~l~--~~~~~ia~~le~~~~~~~~~~~~~r~l~pNVDfysa~v~~~lGip~~~ft~-------- 314 (353)
T PRK12350 247 A--EDPRARVLRATAKRLG--APRYEVAEAVEQAALAELRERRPDRPLETNVEFWAAVLLDFAGVPAHMFTA-------- 314 (353)
T ss_pred C--CCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHHcCcChhhhcc--------
Confidence 4 6999999999999986 68999999999987551 6899999999999999999999999998
Q ss_pred hhhcchhhhhhhhhhhhhhHHHhhhhcCCCCCC
Q 014132 389 IGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRH 421 (430)
Q Consensus 389 ~~~~~~lf~~~R~~GwiAH~~Eq~~~~~P~~r~ 421 (430)
+|++||++||+|||+||++.+ .+.|+
T Consensus 315 ------lFai~R~~Gw~AH~~Eq~~~~-~i~RP 340 (353)
T PRK12350 315 ------MFTCGRTAGWSAHILEQKRTG-RLVRP 340 (353)
T ss_pred ------hHHhhhHHHHHHHHHHHHhcC-CCcCC
Confidence 999999999999999998654 23344
No 11
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic. This model includes both mitochondrial and peroxisomal forms of citrate synthase. Citrate synthase is the entry point to the TCA cycle from acetyl-CoA. Peroxisomal forms, such as SP:P08679 from yeast (recognized by the C-terminal targeting motif SKL) act in the glyoxylate cycle. Eukaryotic homologs excluded by the high trusted cutoff of this model include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans.
Probab=100.00 E-value=2.7e-60 Score=487.75 Aligned_cols=342 Identities=17% Similarity=0.168 Sum_probs=259.2
Q ss_pred eEEEEecCCccCCCCHHHHHHHhhcCC--------CccEEEEeeccCChhHHHH--HHHHHcCCCCCCEEEEecCCcccc
Q 014132 17 YEGIAIGGDVFPGSTLSDHILRFNNIP--------QVKMMVVLGELGGRDEYSL--VEALKQGKVNKPVVAWVSGTCARL 86 (430)
Q Consensus 17 S~~i~~Ggd~i~g~~~~d~l~~l~~Dp--------~T~~Ivl~gE~~~~~E~~~--a~~~~~~~~~KPvv~~~~G~~~~~ 86 (430)
|..=+-.|-.|+|.++.|+.+.+.+-+ ++-..+++||.|..+|.+. .++.+.+..+..|..++-..
T Consensus 54 S~iD~~~Gl~yRGy~I~dl~~~~~~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~~---- 129 (427)
T TIGR01793 54 SVLDPEEGIRFRGLSIPECQKLLPKAKGGEEPLPEGLLWLLLTGKVPSEEQVDALSAEWRARADLPEHVYKTIDAL---- 129 (427)
T ss_pred eEEcCCCCeEECCeeHHHHHHHhccCCccccCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhC----
Confidence 333333347899999999977665533 3444489999999877543 33433444566666555433
Q ss_pred cccccccccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhHHHHHh
Q 014132 87 FKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKS 166 (430)
Q Consensus 87 ~p~g~~~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~l~ 166 (430)
|.. .|..++... -.++|...- ...+.+. .|. .+...| .+..+++++|+
T Consensus 130 -p~~---~hPM~~L~~-------~vsaL~~~~------------~f~~~y~----~~~----~~~~~~-~~~~e~~~~Li 177 (427)
T TIGR01793 130 -PVT---LHPMAQFAT-------AVMALQVES------------EFAKAYA----KGI----HKTKYW-EYTYEDSMDLI 177 (427)
T ss_pred -CCC---CCHHHHHHH-------HHHhccccc------------chhhhcc----cCc----cccccH-HHHHHHHHHHH
Confidence 222 243332210 011111000 0000000 110 000111 12356889999
Q ss_pred cchhhHHHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCC-CCCcchhHH
Q 014132 167 GKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHG-PCVSGAHNT 245 (430)
Q Consensus 167 ak~p~i~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg-~~~St~~aa 245 (430)
||+|+|++++||...+.|++ +.++.++++ .+||++|+ . . |++...++||++|||||||| +|+|| |++
T Consensus 178 Ak~P~i~A~~yr~~~~~g~~-i~p~~~l~~-------a~Nfl~Ml-~-~-~~~~~~~~l~~~LiLhADHeg~NaST-faa 245 (427)
T TIGR01793 178 AKLPTVAAYIYRNMYKDGQS-ISIDDSKDY-------SANFAHML-G-Y-DSPSFQELMRLYLTIHSDHEGGNVSA-HTG 245 (427)
T ss_pred HHHHHHHHHHHHHHhcCCCc-cCCCCCccH-------HHHHHHHh-c-C-CCHHHHHHHHHHHhhhcccccccchh-HHH
Confidence 99999999999954557777 677888776 67777776 3 3 77889999999999999999 89999 999
Q ss_pred HHhhccCCChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhc------cCCCHHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 014132 246 IVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD------RGLSAYEFVESMKKKGIRVPGIGHRIKRGDNR 318 (430)
Q Consensus 246 r~~aSt~a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~------~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~~ 318 (430)
|+++||++|+|+|++||++++ ||+||||+++|++||+++.+ ..+++++||++.+++|++|||||||||+. .
T Consensus 246 rvvaSt~ad~y~~v~Agi~aL~GPlHGgAn~~vl~~l~ei~~~ig~~~s~~~v~~~i~~~l~~g~~i~GfGH~vyr~--~ 323 (427)
T TIGR01793 246 HLVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLWLKSVVSECGENVTKEQLKDYIWKTLNSGKVVPGYGHAVLRK--T 323 (427)
T ss_pred HHhhccCCCHHHHHHHHHhhccCCccCCcHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCCCCCCCC--C
Confidence 999999999999999999999 99999999999999999853 22578999999999999999999999984 6
Q ss_pred cHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh------hccCCcccchhhHHHHHHHHhccC-CCCCchhhhHHHHhhhh
Q 014132 319 DKRVELLQKFARTHFPSVKYMEYAVQVETYTL------SKANNLVLNVDGAIGSLFLDLLAG-SGMFSKQEIDEIVEIGY 391 (430)
Q Consensus 319 DPRa~~L~~~~~~~~~~~~~~~~a~~~e~~~~------~~~~~l~~Nvd~~~a~l~~~lG~~-~~~ft~~e~~~~~p~~~ 391 (430)
|||+.+|++++++....+++++++.++++++. .+.++++||||||+|++++.||+| .++||+
T Consensus 324 DPRa~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~pNVD~~sg~l~~~lGip~~~~~t~----------- 392 (427)
T TIGR01793 324 DPRYICQREFALKHLPDDPLFKLVSNLYKIVPGILTELGKVKNPWPNVDAHSGVLLQYYGLTEARYYTV----------- 392 (427)
T ss_pred CCCcHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHcCCCchhhhhh-----------
Confidence 99999999999988888899999999998652 146899999999999999999998 589998
Q ss_pred cchhhhhhhhhhhhhhHHHhhhhcCCCCCCC
Q 014132 392 LNGLFVLARSIGLIGHTFDQKRLKQPLYRHP 422 (430)
Q Consensus 392 ~~~lf~~~R~~GwiAH~~Eq~~~~~P~~r~~ 422 (430)
+|++||++||+||++||+...+||.||.
T Consensus 393 ---lFavsR~~Gw~AH~ieq~~~~~~I~RP~ 420 (427)
T TIGR01793 393 ---LFGVSRALGILSQLIWDRALGLPLERPK 420 (427)
T ss_pred ---HhhhhccchHHHHHHHHHHcCCCccCCc
Confidence 9999999999999999998888999984
No 12
>TIGR01798 cit_synth_I citrate synthase I (hexameric type). This model describes one of several distinct but closely homologous classes of citrate synthase, the protein that brings carbon (from acetyl-CoA) into the TCA cycle. This form, class I, is known to be hexameric and allosterically inhibited by NADH in Escherichia coli, Acinetobacter anitratum, Azotobacter vinelandii, Pseudomonas aeruginosa, etc. In most species with a class I citrate synthase, a dimeric class II isozyme is found. The class II enzyme may act primarily on propionyl-CoA to make 2-methylcitrate or be bifunctional, may be found among propionate utilization enzymes, and may be constitutive or induced by propionate. Some members of this model group as class I enzymes, and may be hexameric, but have shown regulatory properties more like class II enzymes.
Probab=100.00 E-value=5.6e-60 Score=484.89 Aligned_cols=324 Identities=18% Similarity=0.284 Sum_probs=252.7
Q ss_pred ccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHH--HHHHHcCCCCCCEEEEecCCcccccccccccccccccccCC
Q 014132 26 VFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL--VEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGE 103 (430)
Q Consensus 26 ~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~--a~~~~~~~~~KPvv~~~~G~~~~~~p~g~~~gHagai~~~~ 103 (430)
.|.|.++.|+.+. ..-+++-..+++||.|..+|.+. .++.+.+..+..|+.++-.. |.. +|...+.
T Consensus 57 ~YRGy~I~dL~~~-~~feEv~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~-----p~~---~hPM~~L--- 124 (412)
T TIGR01798 57 LYRGYPIDQLATK-SDYLEVCYLLLNGELPTAEQKDEFDDTVTRHTMVHEQVTRFFNGF-----RRD---AHPMAVM--- 124 (412)
T ss_pred EECCccHHHHhcc-CCHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHhC-----CCc---CChHHHH---
Confidence 6899999999984 23456767799999999877543 23333333455555444222 111 1332222
Q ss_pred cCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhHHHHHhcchhhHHHHHHhhccCC
Q 014132 104 MESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDR 183 (430)
Q Consensus 104 ~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~l~ak~p~i~a~~~~i~~~~ 183 (430)
..+-..+ +.++|+..+.......+.++++|+||+|+|+|++|| ++.
T Consensus 125 --------------------------~~~vs~l------~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~A~~yr--~~~ 170 (412)
T TIGR01798 125 --------------------------VGVVGAL------SAFYHDSLDINDPRHREIAAIRLIAKIPTLAAMSYK--YSI 170 (412)
T ss_pred --------------------------HHHHHHH------hhhCccccccCCHHHHHHHHHHHHHHHHHHHHHHHH--HhC
Confidence 1111111 223333222222223346789999999999999999 678
Q ss_pred CCcccccCCCcchhhhccCCHHHHHHHhhhCC-----CCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhccCCChHHH
Q 014132 184 GEEPCYAGVPMSSIVEQGYGVGDVISLLWFKR-----SLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSS 258 (430)
Q Consensus 184 g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~-----~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aSt~a~~~~a 258 (430)
|++++.|..++++ .+||++|+ +|. +|++.++++||++||||||||+|+|| |++|+++||++|+|+|
T Consensus 171 g~~~i~p~~~ls~-------a~Nfl~Ml-~g~~~~~~~p~~~~~~~l~~~LiL~aDHg~n~ST-faaRv~aSt~ad~ysa 241 (412)
T TIGR01798 171 GQPFVYPRNDLSY-------AENFLHMM-FATPCEDYKVNPVLARAMDRIFILHADHEQNAST-STVRLAGSSGANPFAC 241 (412)
T ss_pred CCCCcCCCCCCCH-------HHHHHHHh-cCCCCccCCCCHHHHHHHHHHHHHhhcCCCCccc-ceeeeeecCCCCHHHH
Confidence 8888999888877 67777777 675 67888999999999999999999999 9999999999999999
Q ss_pred HHHhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcC--CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhC--
Q 014132 259 LVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKG--IRVPGIGHRIKRGDNRDKRVELLQKFARTHF-- 333 (430)
Q Consensus 259 v~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~--~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~-- 333 (430)
++||++++ ||+||||+++|++||+++.+. +++++||++.++++ ++|||||||+|+ +.|||+++|+++++++.
T Consensus 242 v~agi~aL~GplHGGA~e~v~~ml~ei~~~-~~~~~~v~~~~~~~~~~~i~GFGHrvyk--~~DPRa~~L~~~a~~l~~~ 318 (412)
T TIGR01798 242 IAAGIAALWGPAHGGANEAALKMLEEIGSV-KNIPEFIKKVKDKNDPFRLMGFGHRVYK--NYDPRAKVMRETCHEVLKE 318 (412)
T ss_pred HHHHhhhccCccccchHHHHHHHHHHhCCh-hHHHHHHHHHHhcCCCccccCCCCCCCC--CCCccHHHHHHHHHHHHHH
Confidence 99999998 999999999999999999876 68999999999887 499999999998 46999999999988752
Q ss_pred ---CCChHHHHHHHHHHHHhh----ccCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcchhhhhhhhhhhhh
Q 014132 334 ---PSVKYMEYAVQVETYTLS----KANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIG 406 (430)
Q Consensus 334 ---~~~~~~~~a~~~e~~~~~----~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R~~GwiA 406 (430)
..++++++++++|+++.+ ..|+++||||||+|+++++||||.++||+ +|++||++||+|
T Consensus 319 ~g~~~~~~~~~a~~~e~~~~~~~~~~~k~l~pNvD~~sa~l~~~lG~p~~~~t~--------------lFaisR~~Gw~A 384 (412)
T TIGR01798 319 LGLHDDPLFKLAMELEKIALNDPYFIERKLYPNVDFYSGIILKAMGIPTSMFTV--------------IFALARTVGWIS 384 (412)
T ss_pred cCCCccHHHHHHHHHHHHHHhhhhhccCCCCcChHHHHHHHHHHcCCChhhhhh--------------HHHHHhhhhHHH
Confidence 237899999999996643 25899999999999999999999999998 999999999999
Q ss_pred hHHHhhhhc-CCCCCC
Q 014132 407 HTFDQKRLK-QPLYRH 421 (430)
Q Consensus 407 H~~Eq~~~~-~P~~r~ 421 (430)
||+||+..+ .++.||
T Consensus 385 H~~Eq~~~~~~~l~RP 400 (412)
T TIGR01798 385 HWSEMISDPGQKIGRP 400 (412)
T ss_pred HHHHHHhCCCCcccCc
Confidence 999998643 234444
No 13
>PRK14036 citrate synthase; Provisional
Probab=100.00 E-value=7.6e-60 Score=480.14 Aligned_cols=333 Identities=19% Similarity=0.228 Sum_probs=254.4
Q ss_pred eeEEEEecCC-ccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHH--HHHHHcCCCCCCEEEEecCCcccccccccc
Q 014132 16 IYEGIAIGGD-VFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL--VEALKQGKVNKPVVAWVSGTCARLFKSEVQ 92 (430)
Q Consensus 16 ~S~~i~~Ggd-~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~--a~~~~~~~~~KPvv~~~~G~~~~~~p~g~~ 92 (430)
+|..-|-.|. .|.|.++.|+++.. .-+++=..+++||.|...|.+. .++.+.+..+..|+.++...
T Consensus 18 Is~idg~~G~L~yRGy~i~dL~~~~-~Feev~~LLl~G~lP~~~el~~f~~~L~~~~~lp~~v~~~i~~~---------- 86 (377)
T PRK14036 18 ISYVDGQKGILEYRGYPIEELAEKS-SFLETAYLLIWGELPTAEELEEFEQEVRMHRRVKYRIRDMMKCF---------- 86 (377)
T ss_pred ceEEECCCCEEEECCccHHHHHccC-CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHhC----------
Confidence 3444444455 68999999988743 2333444488899998776543 22222222333333332211
Q ss_pred cccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhHHHHHhcchhhH
Q 014132 93 FGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAP 172 (430)
Q Consensus 93 ~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~l~ak~p~i 172 (430)
+.-.+|=+++..+-..+ +.++|+.++..++ ...+++++++|++|+|
T Consensus 87 ---------------------------p~~~hpm~~L~~~vs~l------~~~~~~~~~~~~~-~~~~~~~rliA~~p~i 132 (377)
T PRK14036 87 ---------------------------PETGHPMDALQASAAAL------GLFYSRRALDDPE-YIRDAVVRLIAKIPTM 132 (377)
T ss_pred ---------------------------CCCCCHHHHHHHHHHHh------hhcCcccccCCHH-HHHHHHHHHHHHHHHH
Confidence 11122222222222222 2344443333322 3356788999999999
Q ss_pred HHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhccC
Q 014132 173 THIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAG 252 (430)
Q Consensus 173 ~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aSt~ 252 (430)
++++++ .++|++++.|+.++++ .+||++|+ +|++|++.++++||++||||||||+|+|| |++|+++||+
T Consensus 133 ~a~~~r--~~~g~~~~~p~~~l~~-------a~nfl~ml-~g~~p~~~~~~~l~~~Lil~ADHg~naST-~aaRv~aSt~ 201 (377)
T PRK14036 133 VAAFQL--IRKGNDPIQPRDDLDY-------AANFLYML-TEREPDPLAARIFDRCLILHAEHTINAST-FSARVTASTL 201 (377)
T ss_pred HHHHHH--HHCCCCCCCCCCCCCH-------HHHHHHHh-cCCCCCHHHHHHHHHHHhhhccCCCCchH-HHHHHHHhcC
Confidence 999998 5677788888777654 44555554 78889999999999999999999999999 9999999999
Q ss_pred CChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 014132 253 KDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFART 331 (430)
Q Consensus 253 a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~ 331 (430)
+|+|+|++||++++ ||+||||++.|++||+++.+. +++++||++.++++++|||||||+||. .|||+++|++++++
T Consensus 202 ad~ys~v~agi~aL~GplHGGA~e~v~~ml~~i~~~-~~~~~~v~~~~~~~~~i~GFGHrvyk~--~DPRa~~L~~~~~~ 278 (377)
T PRK14036 202 TDPYAVIASAVGTLAGPLHGGANEDVLAMLEEIGSV-ENVRPYLDERLANKQKIMGFGHREYKV--KDPRATILQKLAEE 278 (377)
T ss_pred CcHHHHHHHHHHHccCccccChHHHHHHHHHHhCCh-hhHHHHHHHHHHCCCceecCCCCCCCC--CCccHHHHHHHHHH
Confidence 99999999999998 999999999999999999876 689999999999999999999999984 69999999999998
Q ss_pred hC---CCChHHHHHHHHHHHHhhc--cCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcchhhhhhhhhhhhh
Q 014132 332 HF---PSVKYMEYAVQVETYTLSK--ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIG 406 (430)
Q Consensus 332 ~~---~~~~~~~~a~~~e~~~~~~--~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R~~GwiA 406 (430)
+. ..++++++++++|+++.+. .|+++||||||+|+++++||||.++||+ +|++||++||+|
T Consensus 279 l~~~~~~~~~~~~a~~~e~~~~~~~~~k~l~pNvD~~sa~l~~~lGip~~~~t~--------------lf~~sR~~Gw~A 344 (377)
T PRK14036 279 LFARFGHDEYYEIALELERVAEERLGPKGIYPNVDFYSGLVYRKLGIPRDLFTP--------------IFAIARVAGWLA 344 (377)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHhccCCCCcChHHHHHHHHHHcCCChhhhhh--------------HHHHHhHHHHHH
Confidence 74 4678999999999988652 5889999999999999999999999998 999999999999
Q ss_pred hHHHhhhh---cCCCCCC
Q 014132 407 HTFDQKRL---KQPLYRH 421 (430)
Q Consensus 407 H~~Eq~~~---~~P~~r~ 421 (430)
||+||+.. .||..+|
T Consensus 345 H~~Eq~~~~~l~RP~~~Y 362 (377)
T PRK14036 345 HWREQLGANRIFRPTQIY 362 (377)
T ss_pred HHHHHHhcCcccCCCcee
Confidence 99999853 3555554
No 14
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=100.00 E-value=2.1e-59 Score=474.37 Aligned_cols=330 Identities=17% Similarity=0.175 Sum_probs=250.6
Q ss_pred eeEEEEecC-CccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHH-HHHHH-cCCCCCCEEEEecCCcccccccccc
Q 014132 16 IYEGIAIGG-DVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL-VEALK-QGKVNKPVVAWVSGTCARLFKSEVQ 92 (430)
Q Consensus 16 ~S~~i~~Gg-d~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~-a~~~~-~~~~~KPvv~~~~G~~~~~~p~g~~ 92 (430)
+|..-|.+| =.|+|.++.|+.+. ..-+++-..+++||.|..+|.+. .+.++ .+..+..|+.++... |..
T Consensus 13 is~id~~~g~L~yRGy~i~dLa~~-~sfeeva~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~~-----p~~-- 84 (363)
T cd06108 13 ISTVGKGGKGLTYRGYDIEDLAEN-ATFEEVAYLLLYGKLPTRKQLDAYKTKLVALRRLPAALKTVLELI-----PKD-- 84 (363)
T ss_pred CceEeCCCCEEEECCccHHHHHhc-CCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHhC-----CCC--
Confidence 344444444 34899999999973 34556667799999998776433 22232 222333333332211 111
Q ss_pred cccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhHHHHHhcchhhH
Q 014132 93 FGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAP 172 (430)
Q Consensus 93 ~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~l~ak~p~i 172 (430)
+|.-. ++..+-.. ++.++|+.++ ....+++++++||+|+|
T Consensus 85 -~hpm~-----------------------------~L~~~vs~------l~~~d~~~~~----~~~~~~a~rlia~~p~i 124 (363)
T cd06108 85 -SHPMD-----------------------------VMRTGCSM------LGCLEPENEF----SQQYEIAIRLLAIFPSI 124 (363)
T ss_pred -CChHH-----------------------------HHHHHHHh------hhhcCCcccc----HHHHHHHHHHHHHHHHH
Confidence 12221 11111111 1334443321 22246788999999999
Q ss_pred HHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhccC
Q 014132 173 THIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAG 252 (430)
Q Consensus 173 ~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aSt~ 252 (430)
++++|++. ..++++..+..++++ .+||++|+ +|++|++.++++||++||||||||+|+|| |++|+++||+
T Consensus 125 ~a~~~r~~-~~~~~~~p~~~~~s~-------a~nfl~ml-~g~~p~~~~~~~l~~~LvL~ADH~~n~St-~aaRv~aSt~ 194 (363)
T cd06108 125 LLYWYHYS-HSGKRIETETDEDSI-------AGHFLHLL-HGKKPGELEIKAMDVSLILYAEHEFNAST-FAARVTASTL 194 (363)
T ss_pred HHHHHHHH-cCCCccCCCCCCCCH-------HHHHHHHh-cCCCCCHHHHHHHHHHhhhhccCCCcchH-HHHHHHhccC
Confidence 99999953 224444444555544 45555555 78899999999999999999999999999 9999999999
Q ss_pred CChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 014132 253 KDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFART 331 (430)
Q Consensus 253 a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~ 331 (430)
+|+|+|++||++++ ||+||||++.|++||+++.+. ++++++|++.+++|++|||||||+|+ +.|||++.|++++++
T Consensus 195 ad~~sav~agi~al~GplHGGA~e~v~~~l~~i~~~-~~~~~~v~~~l~~~~~i~GFGHrvyk--~~DPRa~~L~~~a~~ 271 (363)
T cd06108 195 SDFYSAITGAIGTLRGPLHGGANEAAMELIERFKSP-EEAEQGLLEKLERKELIMGFGHRVYK--EGDPRSDIIKKWSKK 271 (363)
T ss_pred CCHHHHHHHHHHhccCCcccchHHHHHHHHHHhCCH-HHHHHHHHHHHhcCCeecCCCCCCCC--CCCccHHHHHHHHHH
Confidence 99999999999998 999999999999999999876 58999999999999999999999997 479999999999988
Q ss_pred hC---CCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcchhhhhhhhhhhhhhH
Q 014132 332 HF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHT 408 (430)
Q Consensus 332 ~~---~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R~~GwiAH~ 408 (430)
+. ..+++++++.++++++.+ .++++||||||+|+++++||+|.++||+ +|++||++||+|||
T Consensus 272 l~~~~~~~~~~~~a~~ie~~~~~-~~~l~pNvD~~sa~l~~~lG~p~~~~t~--------------iF~i~R~~Gw~AH~ 336 (363)
T cd06108 272 LSEEGGDPLLYQISERIEEVMWE-EKKLFPNLDFYSASAYHFCGIPTELFTP--------------IFVMSRVTGWAAHI 336 (363)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHH-hcCCCcChHHHHHHHHHHcCCChhhhhh--------------HHHHHHHHHHHHHH
Confidence 64 468999999999998865 6999999999999999999999999998 99999999999999
Q ss_pred HHhhhhc---CCCCCC
Q 014132 409 FDQKRLK---QPLYRH 421 (430)
Q Consensus 409 ~Eq~~~~---~P~~r~ 421 (430)
+||+..+ ||..+|
T Consensus 337 ~Eq~~~~~~iRP~~~Y 352 (363)
T cd06108 337 MEQRANNRLIRPSADY 352 (363)
T ss_pred HHHHhcCCCcCcccee
Confidence 9998543 444444
No 15
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=100.00 E-value=1.2e-59 Score=477.03 Aligned_cols=333 Identities=20% Similarity=0.191 Sum_probs=251.8
Q ss_pred eeEEEEecCC-ccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHH-HHHHH-cCCCCCCEEEEecCCcccccccccc
Q 014132 16 IYEGIAIGGD-VFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL-VEALK-QGKVNKPVVAWVSGTCARLFKSEVQ 92 (430)
Q Consensus 16 ~S~~i~~Ggd-~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~-a~~~~-~~~~~KPvv~~~~G~~~~~~p~g~~ 92 (430)
+|.+-|.+|. .|.|.++.|+.+. ..-+++-..+++||.|..+|.+. .+-+. .+..+..|..++... |..
T Consensus 13 is~v~~~~g~L~YRGy~i~dLa~~-~~FEeva~LL~~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~~-----p~~-- 84 (366)
T cd06117 13 LCTVGRSGNDLHYRGYDILDLAEK-CEFEEVAHLLVHGKLPTKSELAAYKTKLKSLRGLPANVKTALEQL-----PAA-- 84 (366)
T ss_pred CeeeecccCEEEECCccHHHHHhc-CCHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHhC-----Ccc--
Confidence 3444444443 4799999999985 34566667799999998776433 22222 222333333333221 111
Q ss_pred cccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhHHHHHhcchhhH
Q 014132 93 FGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAP 172 (430)
Q Consensus 93 ~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~l~ak~p~i 172 (430)
+|...+ +..+-. .++.++|..++.+.+. ..+++++++|++|+|
T Consensus 85 -~hpm~~-----------------------------l~~~vs------~l~~~~~~~~~~~~~~-~~~~a~rlia~~p~i 127 (366)
T cd06117 85 -AHPMDV-----------------------------MRTGVS------VLGCVLPEKEDHPVSG-ARDIADRLMASLGSI 127 (366)
T ss_pred -CCHHHH-----------------------------HHHHHh------hhcccCcccccCChHH-HHHHHHHHHHHHHHH
Confidence 122211 111111 1233444433333222 234688999999999
Q ss_pred HHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhccC
Q 014132 173 THIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAG 252 (430)
Q Consensus 173 ~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aSt~ 252 (430)
++++|++. ..++++..+..++++ .+||++|+ +|..|++.++++||++||||||||+|+|| |++|+++||+
T Consensus 128 ~a~~~r~~-~~~~~i~p~~~~~s~-------a~Nfl~ml-~g~~p~~~~~~~l~~~LvL~ADHg~n~ST-~aarv~aSt~ 197 (366)
T cd06117 128 LLYWYHYS-HNGKRIEVETDDDSI-------GGHFLHLL-HGEKPSESWEKAMHISLILYAEHEFNAST-FTARVIAGTG 197 (366)
T ss_pred HHHHHHHh-cCCCccCCCCCcCCH-------HHHHHHHh-cCCCCCHHHHHHHHHHHHHhcccCCchHH-HHHHHHHccC
Confidence 99999953 233444333445555 56666655 78889999999999999999999999999 9999999999
Q ss_pred CChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 014132 253 KDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFART 331 (430)
Q Consensus 253 a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~ 331 (430)
+|+|+|++||++++ ||+||||++.|++||+++.+. ++++++|++.+++|++|||||||+|+ +.|||+++|++++++
T Consensus 198 ad~~sav~agi~aL~GplHGGA~e~v~~~l~~i~~~-~~~~~~i~~~~~~~~~i~GFGHrvyk--~~DPRa~~L~~~~~~ 274 (366)
T cd06117 198 SDMYSAITGAIGALRGPKHGGANEVAFEIQQRYESA-DEAEADIRRRVENKEVVIGFGHPVYT--IADPRNQVIKEVAKQ 274 (366)
T ss_pred CcHHHHHHHHHHhccCCccCchHHHHHHHHHHhCCH-HHHHHHHHHHHhcCCcccCCCCCCCC--CCCchHHHHHHHHHH
Confidence 99999999999998 999999999999999999876 58999999999999999999999998 469999999999999
Q ss_pred hC---CCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcchhhhhhhhhhhhhhH
Q 014132 332 HF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHT 408 (430)
Q Consensus 332 ~~---~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R~~GwiAH~ 408 (430)
+. ...+++++++++++++.+ .++++||||||+|+++++||||.++||+ +|++||++||+|||
T Consensus 275 l~~~~~~~~~~~~~~~ie~~~~~-~k~l~pNvD~~s~~l~~~lG~p~~~~t~--------------lf~isR~~Gw~AH~ 339 (366)
T cd06117 275 LSKEGGDMKMFDIAERLETVMWE-EKKMFPNLDWFSAVSYHMMGVPTAMFTP--------------LFVIARTTGWSAHI 339 (366)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHH-HhCCCcCcHHHHHHHHHHcCcChhhhhH--------------HHHHHHHHHHHHHH
Confidence 85 346889999999998764 6899999999999999999999999998 99999999999999
Q ss_pred HHhhhhc---CCCCCC
Q 014132 409 FDQKRLK---QPLYRH 421 (430)
Q Consensus 409 ~Eq~~~~---~P~~r~ 421 (430)
+||+..+ ||..+|
T Consensus 340 ~Eq~~~~~~~RP~~~Y 355 (366)
T cd06117 340 IEQRQDGKIIRPSANY 355 (366)
T ss_pred HHHHhcCCCcccccee
Confidence 9998643 454444
No 16
>PLN02456 citrate synthase
Probab=100.00 E-value=1.4e-59 Score=486.69 Aligned_cols=327 Identities=20% Similarity=0.254 Sum_probs=257.7
Q ss_pred ecCC-ccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHH--HHHHHcCCCCCCEEEEecCCcccccccccccccccc
Q 014132 22 IGGD-VFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL--VEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGA 98 (430)
Q Consensus 22 ~Ggd-~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~--a~~~~~~~~~KPvv~~~~G~~~~~~p~g~~~gHaga 98 (430)
--|. .|.|.++.|+.+.. .-+++-..+++||.|..+|.+. .++.+.+..+..|+.++... |.. .|...
T Consensus 84 ~~G~L~YRGy~I~dLa~~~-~feevayLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~-----p~~---~hPM~ 154 (455)
T PLN02456 84 DEGILRFRGYPIEELAEKS-PFEEVAYLLLYGNLPTKEQLADWEAELRQHSAVPEHVLDVIDAL-----PHD---AHPMT 154 (455)
T ss_pred CCCEEEECCccHHHHHhcC-CHHHHHHHHHcCcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHhC-----CCc---CCcHH
Confidence 3345 78999999999853 3466667799999998776543 33333334556666655443 222 14333
Q ss_pred cccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCCCC------C--CCCCCchhhHHHHHhcchh
Q 014132 99 KSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKE------V--TPPQIPEDLNTAIKSGKVR 170 (430)
Q Consensus 99 i~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e------~--~~~~~~~~~~~~~l~ak~p 170 (430)
+.. + -..+| +.++|..+ + ..+ ....+++++|+||+|
T Consensus 155 ~L~----~---~vsal----------------------------~~~~~~~~~~~~g~~~~~~~-~~~~~~a~rliAk~p 198 (455)
T PLN02456 155 QLV----S---GVMAL----------------------------STFSPDANAYLRGQHKYKSW-EVRDEDIVRLIGKLP 198 (455)
T ss_pred HHH----H---HHHhh----------------------------hhcCcchhhhhcccCcccCH-HHHHHHHHHHHHHHH
Confidence 321 0 01111 11111111 0 111 233568899999999
Q ss_pred hHHHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhC-----CCCchhHHHHHHHHHHHhccCCCCCcchhHH
Q 014132 171 APTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFK-----RSLPRYCTQFIEICIMLCADHGPCVSGAHNT 245 (430)
Q Consensus 171 ~i~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~-----~~~~~~~~~~l~~~lvl~aDHg~~~St~~aa 245 (430)
+|+|++|+ +..|+++++|+.++++ .+||++|| ++ .+|++.++++||++||||||||+|+|| |++
T Consensus 199 ~iaA~~yr--~~~g~~~~~P~~~ls~-------a~Nfl~Ml-~~~~~~~~~p~~~~~~~l~~~LiLhADHe~n~ST-~aa 267 (455)
T PLN02456 199 TLAAAIYR--RMYGRGPVIPDNSLDY-------AENFLYML-GSLGDRSYKPDPRLARLLDLYFIIHADHEGGCST-AAA 267 (455)
T ss_pred HHHHHHHH--HHcCCCCCCCCCCCCH-------HHHHHHHh-cCCCCcCCCCCHHHHHHHHHHHeeeccCCCCchh-HHH
Confidence 99999999 6678888888888877 77888877 45 457888999999999999999999999 899
Q ss_pred HHhh-ccCCChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCcHHHH
Q 014132 246 IVTA-RAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVE 323 (430)
Q Consensus 246 r~~a-St~a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~~DPRa~ 323 (430)
|+++ ||++|+|+|++||++++ ||+||||+++|++||+++.+. +++++||++.+++|++|||||||||+ +.|||++
T Consensus 268 r~~a~St~ad~ysavaAgi~aL~GPlHGGA~e~v~~~l~ei~~~-~~v~~~v~~~l~~~~~l~GFGHrvyk--~~DPRa~ 344 (455)
T PLN02456 268 RHLVGSSGVDPYTSVAAGVNALAGPLHGGANEAVLKMLKEIGTV-ENIPEYVEGVKNSKKVLPGFGHRVYK--NYDPRAK 344 (455)
T ss_pred HHHHhccCCCHHHHHHHHhhhcCCCcccChHHHHHHHHHHhCCH-HHHHHHHHHHHhCCCcccCCCCCCCC--CCCCCHH
Confidence 9888 99999999999999998 999999999999999999866 58999999999999999999999998 4799999
Q ss_pred HHHHHHHHh---CCCChHHHHHHHHHHHHhh----ccCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcchhh
Q 014132 324 LLQKFARTH---FPSVKYMEYAVQVETYTLS----KANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLF 396 (430)
Q Consensus 324 ~L~~~~~~~---~~~~~~~~~a~~~e~~~~~----~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf 396 (430)
+|+++++++ ...+++++++.++++++.. +.|+++||||||+|++++.||||.++||+ +|
T Consensus 345 ~L~~~a~~l~~~~~~~~~~~ia~~le~~~~~~~~~~~r~l~pNVDfysg~l~~~lGip~~~~t~--------------lF 410 (455)
T PLN02456 345 CIREFALEVFKHVGDDPLFKVASALEEVALLDEYFKVRKLYPNVDFYSGVLLRALGFPEEFFTV--------------LF 410 (455)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHcCcChhhccc--------------hh
Confidence 999999976 3678999999999997532 36899999999999999999999999998 99
Q ss_pred hhhhhhhhhhhHHHhhhh-----cCCCCCC
Q 014132 397 VLARSIGLIGHTFDQKRL-----KQPLYRH 421 (430)
Q Consensus 397 ~~~R~~GwiAH~~Eq~~~-----~~P~~r~ 421 (430)
+++|++||+|||+||+.. .||...|
T Consensus 411 aisR~~Gw~AH~~E~~~~~~~ri~RP~~~Y 440 (455)
T PLN02456 411 AVSRAAGYLSQWDEALGLPDERIMRPKQVY 440 (455)
T ss_pred hhhhHHHHHHHHHHHHhCCcccccCCCccc
Confidence 999999999999999843 3466555
No 17
>PRK05614 gltA type II citrate synthase; Reviewed
Probab=100.00 E-value=5.4e-59 Score=478.91 Aligned_cols=320 Identities=18% Similarity=0.281 Sum_probs=247.5
Q ss_pred cCC-ccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHH-H-HHHHcCCCCCCEEEEecCCccccccccccccccccc
Q 014132 23 GGD-VFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL-V-EALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAK 99 (430)
Q Consensus 23 Ggd-~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~-a-~~~~~~~~~KPvv~~~~G~~~~~~p~g~~~gHagai 99 (430)
.|. .|+|.++.|+.+. ..-+++-..+++||.|..+|.+. . ++.+.+..+..|..++-.. |.. +|.-.+
T Consensus 66 ~G~L~YRGy~i~dLa~~-~~feEva~LLl~G~LP~~~el~~f~~~L~~~~~lp~~v~~~i~~~-----p~~---~hPM~~ 136 (419)
T PRK05614 66 KGILLYRGYPIEQLAEK-SDFLEVCYLLLYGELPTAEQKAEFDTTVTRHTMVHEQLKRFFRGF-----RRD---AHPMAV 136 (419)
T ss_pred CCEEEECCccHHHHHhc-CCHHHHHHHHHcCcCCCHHHHHHHHHhHhhccCCCHHHHHHHHhc-----CCC---CCHHHH
Confidence 444 6899999999984 23455777799999998766543 2 2222222333443333221 111 132222
Q ss_pred ccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhHHHHHhcchhhHHHHHHhh
Q 014132 100 SGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTI 179 (430)
Q Consensus 100 ~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~l~ak~p~i~a~~~~i 179 (430)
. ..+-..+ +.++|...+........+++++|+||+|+|++++|+
T Consensus 137 L-----------------------------~~~vs~l------~~~~~~~~~~~~~~~~~~~a~rlia~~p~i~A~~~r- 180 (419)
T PRK05614 137 L-----------------------------CGVVGAL------SAFYHDSLDINDPEHREIAAIRLIAKMPTLAAMAYK- 180 (419)
T ss_pred H-----------------------------HHHHHHH------hhcCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 2 1111111 122232222222233346689999999999999999
Q ss_pred ccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCC-----CCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhccCCC
Q 014132 180 SDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKR-----SLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKD 254 (430)
Q Consensus 180 ~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~-----~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aSt~a~ 254 (430)
++.|+++++|..++++ .+||++|+ +|. +|++.++++||++||||||||+|+|| |++|+++||++|
T Consensus 181 -~~~g~~~~~p~~~ls~-------a~nfl~ml-~g~~~~~~~~~~~~~~~ld~~LiL~ADH~~n~ST-fa~RvvaSt~ad 250 (419)
T PRK05614 181 -YSIGQPFVYPRNDLSY-------AENFLRMM-FATPCEEYEVNPVLVRALDRIFILHADHEQNAST-STVRLAGSSGAN 250 (419)
T ss_pred -HhCCCCCCCCCCccCH-------HHHHHHHH-hCCCCccCCCCHHHHHHHHHHHhhhccCCCCcch-HHHhhhhccCCC
Confidence 5778999999888877 67787777 565 56778899999999999999999999 999999999999
Q ss_pred hHHHHHHhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHH--cCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 014132 255 LVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKK--KGIRVPGIGHRIKRGDNRDKRVELLQKFART 331 (430)
Q Consensus 255 ~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~--~~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~ 331 (430)
+|+|++||++++ ||+||||++.|++||+++.+. +++++||++.++ +|++|||||||+|+ +.|||+++|++++++
T Consensus 251 lysav~agi~aL~GplHGGA~e~v~~~l~~i~~~-~~~~~~i~~~~~~~~~~~i~GFGHrvyk--~~DPRa~~l~~~a~~ 327 (419)
T PRK05614 251 PFACIAAGIAALWGPAHGGANEAVLKMLEEIGSV-DNIPEFIARAKDKNDGFRLMGFGHRVYK--NYDPRAKIMRETCHE 327 (419)
T ss_pred HHHHHHHHHhhcCCCcccChHHHHHHHHHHhCCc-hhHHHHHHHHHhccCCccccCCCCCCCC--CCCCCHHHHHHHHHH
Confidence 999999999998 999999999999999999876 689999999976 45699999999998 469999999999986
Q ss_pred h----CCCChHHHHHHHHHHHHhhc----cCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcchhhhhhhhhh
Q 014132 332 H----FPSVKYMEYAVQVETYTLSK----ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIG 403 (430)
Q Consensus 332 ~----~~~~~~~~~a~~~e~~~~~~----~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R~~G 403 (430)
+ ...++++++++++|+++.++ .++++||||||+|+++++||||.++||+ +|++||++|
T Consensus 328 l~~~~~~~~~~~~ia~~ie~~~~~~~~~~~r~l~pNvD~~s~~l~~~lG~p~~~~t~--------------lFa~~R~~G 393 (419)
T PRK05614 328 VLKELGLNDPLLEVAMELEEIALNDEYFIERKLYPNVDFYSGIILKALGIPTSMFTV--------------IFALARTVG 393 (419)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHhhhhhhccCCCCcChHHHHHHHHHHcCcChhhhcc--------------hHHhHhHHH
Confidence 5 33688999999999975443 5999999999999999999999999998 999999999
Q ss_pred hhhhHHHhhhh
Q 014132 404 LIGHTFDQKRL 414 (430)
Q Consensus 404 wiAH~~Eq~~~ 414 (430)
|+|||+||++.
T Consensus 394 w~AH~~Eq~~~ 404 (419)
T PRK05614 394 WIAHWNEMHSD 404 (419)
T ss_pred HHHHHHHHHhc
Confidence 99999999864
No 18
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-neg
Probab=100.00 E-value=4e-59 Score=479.57 Aligned_cols=336 Identities=19% Similarity=0.190 Sum_probs=256.3
Q ss_pred EecCCccCCCCHHHHHHHhhc--------CCCccEEEEeeccCChhHHHH--HHHHHcCCCCCCEEEEecCCcccccccc
Q 014132 21 AIGGDVFPGSTLSDHILRFNN--------IPQVKMMVVLGELGGRDEYSL--VEALKQGKVNKPVVAWVSGTCARLFKSE 90 (430)
Q Consensus 21 ~~Ggd~i~g~~~~d~l~~l~~--------Dp~T~~Ivl~gE~~~~~E~~~--a~~~~~~~~~KPvv~~~~G~~~~~~p~g 90 (430)
|--|-.|+|.++.|+.+...+ -+++-..+++||.|..+|.+. .++.+.+..+..|+.++-+. |..
T Consensus 55 g~~Gl~YRGy~I~dLa~~~~~~~~~~~~~fEev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~-----p~~ 129 (427)
T cd06105 55 PEEGIRFRGLSIPECQKLLPKAPGGEEPLPEGLFWLLLTGEVPTKEQVSALSKEWAARAALPSHVVTMLDNF-----PTN 129 (427)
T ss_pred CCCCeEECCccHHHHHhhCcccccccccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhC-----CCC
Confidence 344467999999999997652 234555689999999877544 33333334455555444332 212
Q ss_pred cccccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCCCCCC--CCCCchhhHHHHHhcc
Q 014132 91 VQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVT--PPQIPEDLNTAIKSGK 168 (430)
Q Consensus 91 ~~~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e~~--~~~~~~~~~~~~l~ak 168 (430)
+|..++... -.++|...- ...+.+ +...+. .| ....+++++|+||
T Consensus 130 ---~hPM~~L~~-------~vsaL~~~d------------~f~~~~----------~~~~~~~~~~-~~~~~~~~~LiAk 176 (427)
T cd06105 130 ---LHPMSQLSA-------AITALNSES------------KFAKAY----------AEGIHKSKYW-EYVYEDSMDLIAK 176 (427)
T ss_pred ---CCHHHHHHH-------HHHhhhccc------------chhhhc----------cccccccccH-HHHHHHHHHHHHH
Confidence 244333310 011111100 000000 000000 01 1235688999999
Q ss_pred hhhHHHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCC-CCCcchhHHHH
Q 014132 169 VRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHG-PCVSGAHNTIV 247 (430)
Q Consensus 169 ~p~i~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg-~~~St~~aar~ 247 (430)
+|+|++++||+ ...|.+++.|+.++++ .+||++|+ ++ + +++..++||++|||||||| +|+|| |++|+
T Consensus 177 ~p~i~A~~yr~-~~~g~~~~~pd~~ls~-------a~Nfl~Ml-~~-~-~~~~~~~l~~~lvLhADHeg~NaST-faarv 244 (427)
T cd06105 177 LPCVAAKIYRN-LYRGGKIIAIDSNLDW-------SANFANML-GY-T-DPQFTELMRLYLTIHSDHEGGNVSA-HTTHL 244 (427)
T ss_pred HHHHHHHHHHH-HhCCCCcCCCCCCcCH-------HHHHHHHh-cC-C-CHHHHHHHHHHHhhhccccCccchH-HHHHH
Confidence 99999999994 2357888889888877 67788777 43 3 3778999999999999999 89999 99999
Q ss_pred hhccCCChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhc------cCCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCcH
Q 014132 248 TARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD------RGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDK 320 (430)
Q Consensus 248 ~aSt~a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~------~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~~DP 320 (430)
++||++|+|+|++||++++ ||+||||+++|++||.++.+ ..+++++||++.+++|++|||||||+|+. .||
T Consensus 245 vaSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei~~~~g~~~~~~~v~~~i~~~l~~g~~i~GFGHrvyk~--~DP 322 (427)
T cd06105 245 VGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTKLQKEVGKDVSDEQLREYVWKTLNSGRVVPGYGHAVLRK--TDP 322 (427)
T ss_pred HhccCCCHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCcccCCCCCCCCC--CCC
Confidence 9999999999999999998 99999999999999988753 12468899999999999999999999984 699
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhh------ccCCcccchhhHHHHHHHHhccC-CCCCchhhhHHHHhhhhcc
Q 014132 321 RVELLQKFARTHFPSVKYMEYAVQVETYTLS------KANNLVLNVDGAIGSLFLDLLAG-SGMFSKQEIDEIVEIGYLN 393 (430)
Q Consensus 321 Ra~~L~~~~~~~~~~~~~~~~a~~~e~~~~~------~~~~l~~Nvd~~~a~l~~~lG~~-~~~ft~~e~~~~~p~~~~~ 393 (430)
|+++|+++++++...++++++++++++++.+ +.++++||||||+|++++.||+| .++|||
T Consensus 323 Ra~~lk~~~~~~~~~~~~~~~~~~ie~~a~~~l~~~~~~~~l~pNVDfysg~l~~~lGip~~~~ft~------------- 389 (427)
T cd06105 323 RYTCQREFALKHLPNDPLFKLVSQLYKIVPPVLTEQGKAKNPWPNVDAHSGVLLQYYGLTEMNYYTV------------- 389 (427)
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHcCCCchhhhHH-------------
Confidence 9999999999988888999999999987532 35899999999999999999999 689998
Q ss_pred hhhhhhhhhhhhhhHHHhhhhcCCCCCCC
Q 014132 394 GLFVLARSIGLIGHTFDQKRLKQPLYRHP 422 (430)
Q Consensus 394 ~lf~~~R~~GwiAH~~Eq~~~~~P~~r~~ 422 (430)
+|++||++||+||++||+...+||.||.
T Consensus 390 -lFa~sR~~GW~AH~~Eq~~~~~~I~RP~ 417 (427)
T cd06105 390 -LFGVSRALGVLSQLIWDRALGLPLERPK 417 (427)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCCCccCCc
Confidence 9999999999999999998778899984
No 19
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homo
Probab=100.00 E-value=8.9e-59 Score=477.32 Aligned_cols=345 Identities=18% Similarity=0.194 Sum_probs=258.3
Q ss_pred eEEEEecCCccCCCCHHHHHHHhhc--------CCCccEEEEeeccCChhHHHH-HHHHH-cCCCCCCEEEEecCCcccc
Q 014132 17 YEGIAIGGDVFPGSTLSDHILRFNN--------IPQVKMMVVLGELGGRDEYSL-VEALK-QGKVNKPVVAWVSGTCARL 86 (430)
Q Consensus 17 S~~i~~Ggd~i~g~~~~d~l~~l~~--------Dp~T~~Ivl~gE~~~~~E~~~-a~~~~-~~~~~KPvv~~~~G~~~~~ 86 (430)
|+.=|-.|-.|.|.++.|+.+.... -+++-..+++||.|..+|.+. .+-+. .+..+..|+.++-..
T Consensus 51 s~iDg~~Gl~YRGy~I~dLa~~~~~~~~~~~~~fEev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~---- 126 (426)
T cd06103 51 SVLDPDEGIRFRGKTIPECQELLPKADGGGEPLPEGLFWLLLTGEVPTEEQVDELSKEWAKRAEVPSHVVKMIDNL---- 126 (426)
T ss_pred eeEcCCCCeEECCccHHHHHhhCccccccCcCcHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhC----
Confidence 3333344568999999999997642 234556699999999877543 33333 333444555444322
Q ss_pred cccccccccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhHHHHHh
Q 014132 87 FKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKS 166 (430)
Q Consensus 87 ~p~g~~~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~l~ 166 (430)
|.. +|.-.+... -.+++.... + ..+.+ +.+ ...++..+ ....+++++|+
T Consensus 127 -p~~---~hPM~~L~~-------~vs~L~~~~------~------~~~~~----~~~---~~~~~~~~-~~~~~~a~~li 175 (426)
T cd06103 127 -PRN---LHPMTQLSA-------AILALQSES------K------FAKAY----AEG---KINKTTYW-EYVYEDAMDLI 175 (426)
T ss_pred -CCC---CChHHHHHH-------HHHhccccc------c------chhhc----ccc---cccccccH-HHHHHHHHHHH
Confidence 212 243332210 011111000 0 00000 000 00001111 12346789999
Q ss_pred cchhhHHHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCC-CCCcchhHH
Q 014132 167 GKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHG-PCVSGAHNT 245 (430)
Q Consensus 167 ak~p~i~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg-~~~St~~aa 245 (430)
||+|+|++++|++..+.|++++.|+.++++ .+||++|+ +.++ ++.+++||++|||||||| +|+|| |++
T Consensus 176 A~~p~I~A~~yr~~~~~g~~~~~p~~~ls~-------aeNfl~ml--~~~~-~~~~~~l~~~LiL~ADHe~~NaST-faa 244 (426)
T cd06103 176 AKLPVVAAKIYRRKYRKGGEIGAIDSKLDW-------SANFAHML--GYED-EEFTDLMRLYLTLHSDHEGGNVSA-HTS 244 (426)
T ss_pred HHHHHHHHHHHHHHhcCCCCccCCCCCcCH-------HHHHHHHh--CCCC-HHHHHHHHHHHhhhhccCCccchH-HHH
Confidence 999999999999533368888889888877 67777766 4333 678899999999999999 79999 999
Q ss_pred HHhhccCCChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhc------cCCCHHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 014132 246 IVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD------RGLSAYEFVESMKKKGIRVPGIGHRIKRGDNR 318 (430)
Q Consensus 246 r~~aSt~a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~------~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~~ 318 (430)
|+++||++|+|+|++||++++ ||+||||++.|++||+++.+ ..+++++||++.+++|++|||||||+|+. .
T Consensus 245 RvvaSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei~~~ig~~~~~~~~~~~v~~~l~~~~~i~GfGHrvYk~--~ 322 (426)
T cd06103 245 HLVGSALSDPYLSFSAALNGLAGPLHGLANQEVLKWLLKMQKELGKDVSDEELEKYIWDTLNSGRVVPGYGHAVLRK--T 322 (426)
T ss_pred HHHhccCCCHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCcccCCCCCCCCC--C
Confidence 999999999999999999998 99999999999999998762 22589999999999999999999999984 6
Q ss_pred cHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh------ccCCcccchhhHHHHHHHHhccC-CCCCchhhhHHHHhhhh
Q 014132 319 DKRVELLQKFARTHFPSVKYMEYAVQVETYTLS------KANNLVLNVDGAIGSLFLDLLAG-SGMFSKQEIDEIVEIGY 391 (430)
Q Consensus 319 DPRa~~L~~~~~~~~~~~~~~~~a~~~e~~~~~------~~~~l~~Nvd~~~a~l~~~lG~~-~~~ft~~e~~~~~p~~~ 391 (430)
|||+++|+++++++...++++++++++++++.+ +.++++||||||+|++++.||+| .++||+
T Consensus 323 DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~~~~~~~~~k~l~pNVDfysa~v~~~lGip~~~~ft~----------- 391 (426)
T cd06103 323 DPRFTCQREFALKHLPDDPLFKLVAQCYKIIPGVLKEHGKVKNPYPNVDAHSGVLLQHYGMTEPQYYTV----------- 391 (426)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcccCCCCCChHhHHHHHHHHcCCChhhhhhH-----------
Confidence 999999999999998888999999999987642 25799999999999999999998 589998
Q ss_pred cchhhhhhhhhhhhhhHHHhhhhcCCCCCCCC
Q 014132 392 LNGLFVLARSIGLIGHTFDQKRLKQPLYRHPW 423 (430)
Q Consensus 392 ~~~lf~~~R~~GwiAH~~Eq~~~~~P~~r~~~ 423 (430)
+|++||++||+||++||+..+++|.||.-
T Consensus 392 ---lFa~sR~~Gw~AH~~Eq~~~~~~i~RP~s 420 (426)
T cd06103 392 ---LFGVSRALGVLAQLVWSRALGLPIERPKS 420 (426)
T ss_pred ---HHhHhhcchHHHHHHHHHhCCCCCCCCCc
Confidence 99999999999999999988889999854
No 20
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=100.00 E-value=3.1e-58 Score=468.34 Aligned_cols=235 Identities=22% Similarity=0.307 Sum_probs=209.7
Q ss_pred hhHHHHHhcchhhHHHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCC
Q 014132 159 DLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPC 238 (430)
Q Consensus 159 ~~~~~~l~ak~p~i~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~ 238 (430)
.+++++++|++|+|++++++ +..|++++.++.+++ |++++++|++|.+|++.++++||++||||||||+|
T Consensus 118 ~~~a~~liA~~p~i~a~~~r--~~~g~~~~~p~~~ls--------~~~nfl~ml~g~~p~~~~~~~l~~~Lil~aDHg~n 187 (373)
T cd06112 118 DAATVKLIAKMPTLVAMWAR--IRNGDDPIEPRPDLD--------YAENFLYMLFGEEPDPATAKILDACLILHAEHTMN 187 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHCCCCCcCCCCCCC--------HHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCC
Confidence 46788999999999999998 567888888877764 45544445478889999999999999999999999
Q ss_pred CcchhHHHHhhccCCChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 014132 239 VSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDN 317 (430)
Q Consensus 239 ~St~~aar~~aSt~a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~ 317 (430)
+|| |++|+++||++|+|+|++||++++ ||+||||+++|++||+++.+. +++++||++.+++|++|||||||+||.
T Consensus 188 ~ST-faaRvvaSt~ad~~s~~~aai~al~GplHGGA~e~~~~~l~~i~~~-~~~~~~v~~~l~~~~~i~GfGH~vyk~-- 263 (373)
T cd06112 188 AST-FSALVTGSTLADPYAVISSAIGTLSGPLHGGANEDVLEMLEEIGSP-ENVKAYLDKKLANKQKIWGFGHRVYKT-- 263 (373)
T ss_pred chH-HHHHHHHhcCCcHHHHHHHHHHhccCccccchHHHHHHHHHHhCCH-HHHHHHHHHHHhcCCeeeCCCCccCCC--
Confidence 999 999999999999999999999998 999999999999999999876 589999999999999999999999984
Q ss_pred CcHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHhhc--cCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhh
Q 014132 318 RDKRVELLQKFARTHFP----SVKYMEYAVQVETYTLSK--ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGY 391 (430)
Q Consensus 318 ~DPRa~~L~~~~~~~~~----~~~~~~~a~~~e~~~~~~--~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~ 391 (430)
.|||+++|+++++++.. .++++++++++|+++.+. .|+++||||||+|+++++||||.++||+
T Consensus 264 ~DPRa~~L~~~~~~l~~~~~~~~~~~~i~~~~e~~~~~~~~~k~l~pNvd~~s~~l~~~lG~p~~~~t~----------- 332 (373)
T cd06112 264 KDPRATILQKLAEDLFAKMGELSKLYEIALEVERLCEELLGHKGVYPNVDFYSGIVYKELGIPADLFTP----------- 332 (373)
T ss_pred CCcHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHhCcCCCCcChHHHHHHHHHHhCcChHhhch-----------
Confidence 69999999999999853 478999999999987653 5899999999999999999999999998
Q ss_pred cchhhhhhhhhhhhhhHHHhhhh---cCCCCCC
Q 014132 392 LNGLFVLARSIGLIGHTFDQKRL---KQPLYRH 421 (430)
Q Consensus 392 ~~~lf~~~R~~GwiAH~~Eq~~~---~~P~~r~ 421 (430)
+|++||++||+|||+||+.. .||..+|
T Consensus 333 ---lF~isR~~Gw~AH~~Eq~~~~~l~RP~~~Y 362 (373)
T cd06112 333 ---IFAVARVAGWLAHWKEQLGDNRIFRPTQIY 362 (373)
T ss_pred ---HHHHHhHHHHHHHHHHHHhccCccCCCcee
Confidence 99999999999999999853 3555555
No 21
>PRK14037 citrate synthase; Provisional
Probab=100.00 E-value=2e-58 Score=469.79 Aligned_cols=330 Identities=20% Similarity=0.251 Sum_probs=248.5
Q ss_pred eeEEEEecCC-ccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHH-HHHHH-cCCCCCCEEEEecCCcccccccccc
Q 014132 16 IYEGIAIGGD-VFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL-VEALK-QGKVNKPVVAWVSGTCARLFKSEVQ 92 (430)
Q Consensus 16 ~S~~i~~Ggd-~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~-a~~~~-~~~~~KPvv~~~~G~~~~~~p~g~~ 92 (430)
+|..=+..|. .|.|.++.|+++. ..-.++-..+++||.|...|.+. ...+. .+..+..|+.++... |..
T Consensus 18 is~id~~~g~L~yRGy~i~dL~~~-~~Feev~~LLl~G~lP~~~e~~~f~~~L~~~~~lp~~v~~~~~~~-----p~~-- 89 (377)
T PRK14037 18 LTFIDGEKGILRYRGYNIEDLVNY-GSYEETIYLMLYGELPTKKELNDLKEKLNEEYEVPQEVIDSIYLM-----PRD-- 89 (377)
T ss_pred ceEEeCCCCEEEECCccHHHHHcc-CCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHhC-----Ccc--
Confidence 3444445555 6899999888863 22344445588999999876543 33333 222233333333111 111
Q ss_pred cccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhHHHHHhcchhhH
Q 014132 93 FGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAP 172 (430)
Q Consensus 93 ~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~l~ak~p~i 172 (430)
+|.- +++...-..+. .++++.+ +.....+++++|+|++|+|
T Consensus 90 -~hpm-----------------------------~~l~~~vs~l~------~~~~~~~---~~~~~~~~a~~liA~~p~i 130 (377)
T PRK14037 90 -SDAI-----------------------------GLMEAAFAALA------SIDKNFK---WKENDKEKAISIIAKMATI 130 (377)
T ss_pred -CCcH-----------------------------HHHHHHHHhhh------ccCCccc---ccHHHHHHHHHHHHHHHHH
Confidence 1222 22222222222 1222211 1112245788999999999
Q ss_pred HHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhccC
Q 014132 173 THIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAG 252 (430)
Q Consensus 173 ~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aSt~ 252 (430)
++++|| +++|++++.++.++++ .+||++|+ +|+.|++.++++||++||||||||+|+|| |++|+++||+
T Consensus 131 ~a~~yr--~~~g~~~~~p~~~~s~-------a~nfl~ml-~G~~p~~~~~~~l~~~Lil~ADHg~naST-~aarv~aSt~ 199 (377)
T PRK14037 131 VANVYR--RKEGNKPRIPEPSDSF-------AESFLLAS-FAREPTAEEIKAMDAALILYTDHEVPAST-TAALVAASTL 199 (377)
T ss_pred HHHHHH--HHcCCCCCCCCCCCCH-------HHHHHHHH-hccCCcHHHHHHHHHHHhHhcccCCchHh-HHHHHhhccC
Confidence 999999 5678888888887755 45555555 89999999999999999999999999999 9999999999
Q ss_pred CChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHc-CCCCCCCCCCCCCCCCCcHHHHHHHHHHH
Q 014132 253 KDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKK-GIRVPGIGHRIKRGDNRDKRVELLQKFAR 330 (430)
Q Consensus 253 a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~-~~~ipGFGH~vy~~~~~DPRa~~L~~~~~ 330 (430)
+|+|+|++||++++ ||+||||+++|++||+++.+. +++++|+.+.+.+ +++|||||||+|+ +.|||+++|+++++
T Consensus 200 ad~ysav~agi~al~GplHGGA~e~v~~~l~ei~~~-~~~~~~~~~~~~~~~~~i~GFGHrvyk--~~DPRa~~L~~~~~ 276 (377)
T PRK14037 200 SDMYSCITAALAALKGPLHGGAAEEAFKQFVEIGDP-NNVEMWFNDKIINGKKRLMGFGHRVYK--TYDPRAKIFKELAE 276 (377)
T ss_pred CCHHHHHHHHHHhccCcccCChHHHHHHHHHHhcCh-hhHHHHHHHHHhcCCCeecCCCCCCCC--CCCccHHHHHHHHH
Confidence 99999999999998 999999999999999999876 5899999876654 5899999999997 47999999999999
Q ss_pred HhC---C-CChHHHHHHHHHHHHhhc--cCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcchhhhhhhhhhh
Q 014132 331 THF---P-SVKYMEYAVQVETYTLSK--ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGL 404 (430)
Q Consensus 331 ~~~---~-~~~~~~~a~~~e~~~~~~--~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R~~Gw 404 (430)
++. . .+++++++.++|+++.+. .|+++||||||+|+++++||||.++||+ +|++||++||
T Consensus 277 ~~~~~~~~~~~~~~ia~~~e~~~~~~~~~k~l~pNvD~~sa~l~~~lG~p~~~~t~--------------lf~isR~~Gw 342 (377)
T PRK14037 277 TLIERNSEAKKYFEIAQKLEELGIKQFGSKGIYPNTDFYSGIVFYALGFPVYMFTA--------------LFALSRTLGW 342 (377)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHcCCChhhcch--------------hHHhhhhhHH
Confidence 874 2 478999999999987542 5899999999999999999999999998 9999999999
Q ss_pred hhhHHHhhhhcCCCCC
Q 014132 405 IGHTFDQKRLKQPLYR 420 (430)
Q Consensus 405 iAH~~Eq~~~~~P~~r 420 (430)
+|||+||+..+.++.|
T Consensus 343 ~AH~~Eq~~~~~~~~R 358 (377)
T PRK14037 343 LAHIIEYVEEQHRLIR 358 (377)
T ss_pred HHHHHHHHhcCCcccc
Confidence 9999999854323333
No 22
>PRK14034 citrate synthase; Provisional
Probab=100.00 E-value=8.4e-58 Score=464.11 Aligned_cols=324 Identities=17% Similarity=0.227 Sum_probs=250.5
Q ss_pred CCccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHH-HHHHH-cCCCCCCEEEEecCCccccccccccccccccccc
Q 014132 24 GDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL-VEALK-QGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSG 101 (430)
Q Consensus 24 gd~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~-a~~~~-~~~~~KPvv~~~~G~~~~~~p~g~~~gHagai~~ 101 (430)
+=.|.|.++.|+.+. ..-+++-..+++||.|..+|.+. .+.+. .+..+..|+..
T Consensus 24 ~L~YRGy~i~dLa~~-~~fEeva~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~----------------------- 79 (372)
T PRK14034 24 TLTYVGYNIDDLAEN-ASFEEVVYLLWHRKLPNKQELAEFKEQLSENAKVPGEIIEH----------------------- 79 (372)
T ss_pred eEEECCccHHHHhcc-CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcCCCHHHHHH-----------------------
Confidence 345799999999973 23455666799999998776433 22232 21122222222
Q ss_pred CCcCcHHHHHHHHHHCCCcc-cCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhHHHHHhcchhhHHHHHHhhc
Q 014132 102 GEMESAQAKNQALRDAGAVV-PTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTIS 180 (430)
Q Consensus 102 ~~~g~~~~k~~~l~~~Gv~~-~~~~~~l~~~~~~~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~l~ak~p~i~a~~~~i~ 180 (430)
+.. ++. ..+|=+++.. .+. .++.++|..++..++ ...+++++++|++|+|++++|+
T Consensus 80 ------------l~~--~p~~~~hpm~~l~~---~vs---~l~~~~~~~~~~~~~-~~~~~a~~liA~~p~i~a~~~r-- 136 (372)
T PRK14034 80 ------------LKQ--YDLKKVHPMSVLRT---AIS---MLGLYDEEAEIMDEE-ANYRKAVRLQAKVPTIVAAFSR-- 136 (372)
T ss_pred ------------HHh--CCCcCcCHHHHHHH---HHH---hhcccCcccccCCHH-HHHHHHHHHHHHHHHHHHHHHH--
Confidence 221 111 0122222211 111 123344443333222 3356788999999999999998
Q ss_pred cCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhccCCChHHHHH
Q 014132 181 DDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLV 260 (430)
Q Consensus 181 ~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aSt~a~~~~av~ 260 (430)
+.+|.+++.++.++++ .+||++ |++|+.|++.++++||++||||||||+|+|| |++|+++||++|+|+|++
T Consensus 137 ~~~g~~~~~p~~~ls~-------a~nfl~-ml~g~~p~~~~~~~l~~~Lvl~aDHg~n~ST-~aaRv~aSt~~d~ysav~ 207 (372)
T PRK14034 137 IRKGLDPVEPRKDLSL-------AANFLY-MLNGEEPDEVEVEAFNKALVLHADHELNAST-FTARVCVATLSDVYSGIT 207 (372)
T ss_pred HHCCCCCCCCCCCCCH-------HHHHHH-HhcCCCCCHHHHHHHHHHHhHhccCCCCccH-HHHHHHhccCCcHHHHHH
Confidence 5678888888887654 445555 4478899999999999999999999999999 999999999999999999
Q ss_pred Hhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhC---CCC
Q 014132 261 SGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHF---PSV 336 (430)
Q Consensus 261 Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~---~~~ 336 (430)
||++++ ||+||||++.|++||+++.+. +++++||++.+++|++|||||||+|+ +.|||+++|+++++++. ..+
T Consensus 208 agi~al~GplHGGA~e~~~~~l~~i~~~-~~~~~~v~~~~~~~~~l~GFGHrvyk--~~DPRa~~L~~~~~~~~~~~~~~ 284 (372)
T PRK14034 208 AAIGALKGPLHGGANENVMKMLTEIGEE-ENVESYIHNKLQNKEKIMGFGHRVYR--QGDPRAKHLREMSKRLTVLLGEE 284 (372)
T ss_pred HHhcccCCCccCCHHHHHHHHHHHhCCH-HHHHHHHHHHHhCCCCcccCCCCCCC--CCCcCHHHHHHHHHHHHHhcCCC
Confidence 999997 999999999999999999876 58999999999999999999999998 47999999999999885 457
Q ss_pred hHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcchhhhhhhhhhhhhhHHHhhhh--
Q 014132 337 KYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRL-- 414 (430)
Q Consensus 337 ~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R~~GwiAH~~Eq~~~-- 414 (430)
+++++++++++++.+ .++++||||||+|+++++||+|.++||+ +|++||++||+|||+||+..
T Consensus 285 ~~~~~a~~~e~~~~~-~k~l~pNvD~~~a~l~~~lG~p~~~~t~--------------lf~i~R~~Gw~AH~~Eq~~~~~ 349 (372)
T PRK14034 285 KWYNMSIKIEEIVTK-EKGLPPNVDFYSASVYHCLGIDHDLFTP--------------IFAISRMSGWLAHILEQYENNR 349 (372)
T ss_pred HHHHHHHHHHHHHHH-cCCCCCChHHHHHHHHHHcCCChHhccc--------------hhHHHhHHHHHHHHHHHHhcCC
Confidence 899999999998865 6899999999999999999999999998 99999999999999999853
Q ss_pred -cCCCCCC
Q 014132 415 -KQPLYRH 421 (430)
Q Consensus 415 -~~P~~r~ 421 (430)
.||..+|
T Consensus 350 l~Rp~~~Y 357 (372)
T PRK14034 350 LIRPRADY 357 (372)
T ss_pred ccCCCcee
Confidence 3455444
No 23
>PRK09569 type I citrate synthase; Reviewed
Probab=100.00 E-value=1.5e-58 Score=476.59 Aligned_cols=337 Identities=16% Similarity=0.171 Sum_probs=254.0
Q ss_pred eEEEEecCCccCCCCHHHHHHHhhcC--------CCccEEEEeeccCChhHHHH--HHHHHcCCCCCCEEEEecCCcccc
Q 014132 17 YEGIAIGGDVFPGSTLSDHILRFNNI--------PQVKMMVVLGELGGRDEYSL--VEALKQGKVNKPVVAWVSGTCARL 86 (430)
Q Consensus 17 S~~i~~Ggd~i~g~~~~d~l~~l~~D--------p~T~~Ivl~gE~~~~~E~~~--a~~~~~~~~~KPvv~~~~G~~~~~ 86 (430)
|..-|-.|-.|.|.++.|+.+...++ +++-..+++||.|..+|.+. .++.+.+..+..|+.++-..
T Consensus 53 S~iDg~~Gl~YRGy~I~dL~~~~p~~~~~~~~~fEev~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~---- 128 (437)
T PRK09569 53 SYLDPQEGIRFRGKTIPETFEALPKAPGSEYPTVESFWYFLLTGEVPTQEQVQEVVAEWKKRQNVPQYVIDAIRAL---- 128 (437)
T ss_pred eeecCCCceeECCccHHHHHhhCccccccCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhC----
Confidence 44434444689999999999986433 34455699999999877544 33333334555555554332
Q ss_pred cccccccccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCCC---CCCCCCCchhhHHH
Q 014132 87 FKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVK---EVTPPQIPEDLNTA 163 (430)
Q Consensus 87 ~p~g~~~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~---e~~~~~~~~~~~~~ 163 (430)
|.. +|..++... -.+++.. .-..+.++++. +...+ ....++++
T Consensus 129 -p~~---~hPM~~L~~-------~vs~l~~----------------------~s~~~~~y~~~~~~~~~~~-~~~~~~~~ 174 (437)
T PRK09569 129 -PRD---SHPMVMLSV-------GILAMQR----------------------ESKFAKFYNEGKFNKMDAW-EYMYEDAS 174 (437)
T ss_pred -CCC---CCHHHHHHH-------HHHhccc----------------------cchhhhhcccccccccccH-HHHHHHHH
Confidence 222 244333311 0111100 00001111111 01111 12346789
Q ss_pred HHhcchhhHHHHHHhhccC-CCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCC-CCCcc
Q 014132 164 IKSGKVRAPTHIISTISDD-RGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHG-PCVSG 241 (430)
Q Consensus 164 ~l~ak~p~i~a~~~~i~~~-~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg-~~~St 241 (430)
+++|++|+|+|++|++ + .|.+++.++.++++ .+||++|+ ++. +..+++||++|||||||| +|+||
T Consensus 175 rliA~~p~i~A~~yr~--~~~g~~~~~p~~~ls~-------a~NFl~Ml-~~~---~~~~~~l~~~LiL~ADHe~~naST 241 (437)
T PRK09569 175 DLVARIPVIAAYIYNL--KYKGDKQIPSDPELDY-------GANFAHMI-GQP---KPYKDVARMYFILHSDHESGNVSA 241 (437)
T ss_pred HHHHHHHHHHHHHHHH--HhCCCCCCCCCCCcCH-------HHHHHHHh-cCC---chHHHHHHHHHhhhhccCCCcchH
Confidence 9999999999999994 4 46677888888876 67777766 442 456899999999999999 79999
Q ss_pred hhHHHHhhccCCChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhc-------cCCCHHHHHHHHHHcCCCCCCCCCCCC
Q 014132 242 AHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD-------RGLSAYEFVESMKKKGIRVPGIGHRIK 313 (430)
Q Consensus 242 ~~aar~~aSt~a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~-------~~~~~~~~v~~~~~~~~~ipGFGH~vy 313 (430)
|++|+++||++|+|+|++||++++ ||+||||+++|++||+++.+ ..+++++||++.++++++|||||||+|
T Consensus 242 -faaRvvaSt~ad~ysav~Agi~aL~GplHGGA~e~v~~~l~~i~~~~~~~~~~~~~~~~~v~~~l~~~~ri~GFGHrvy 320 (437)
T PRK09569 242 -HTTHLVASALSDAYYSYSAGLNGLAGPLHGLANQEVLGWIQQFQEKLGGEEPTKEQVEQALWDTLNAGQVIPGYGHAVL 320 (437)
T ss_pred -HHHHHHhccCCCHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCcccCCCCCCC
Confidence 999999999999999999999998 99999999999999998862 225789999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh------ccCCcccchhhHHHHHHHHhccC-CCCCchhhhHHH
Q 014132 314 RGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLS------KANNLVLNVDGAIGSLFLDLLAG-SGMFSKQEIDEI 386 (430)
Q Consensus 314 ~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~~e~~~~~------~~~~l~~Nvd~~~a~l~~~lG~~-~~~ft~~e~~~~ 386 (430)
+ +.|||+++|+++++++...++++++++.+++++.+ +.++++||||||+|++++.|||| .++||+
T Consensus 321 k--~~DPRa~~L~~~a~~~~~~~~~~~ia~~~e~v~~~~~~~~~~~~~l~pNVD~~sg~l~~~lGip~~~~~t~------ 392 (437)
T PRK09569 321 R--KTDPRYTAQREFCLKHLPDDPLFKLVAMIFEVAPGVLTEHGKTKNPWPNVDAQSGVIQWYYGVKEWDFYTV------ 392 (437)
T ss_pred C--CCCCchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCChHHHHHHHHHHcCCCchhhhHH------
Confidence 8 46999999999999998888999999999986532 35899999999999999999998 599998
Q ss_pred HhhhhcchhhhhhhhhhhhhhHHHhhhhcCCCCCC
Q 014132 387 VEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRH 421 (430)
Q Consensus 387 ~p~~~~~~lf~~~R~~GwiAH~~Eq~~~~~P~~r~ 421 (430)
+|++||++||+||++||+....|+.||
T Consensus 393 --------lFaisR~~Gw~AH~iEq~~~~~~i~RP 419 (437)
T PRK09569 393 --------LFGVGRALGVMANITWDRGLGYAIERP 419 (437)
T ss_pred --------HHHHHHHHHHHHHHHHHHhCCCCccCC
Confidence 999999999999999999655556666
No 24
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion]
Probab=100.00 E-value=4.6e-59 Score=469.27 Aligned_cols=430 Identities=60% Similarity=0.956 Sum_probs=410.1
Q ss_pred ChHHHHHHHHhcCCCeeEEEEecCCccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHHHHHHHcCCCCCCEEEEec
Q 014132 1 MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVS 80 (430)
Q Consensus 1 ~~~ei~~~~~~~g~G~S~~i~~Ggd~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~a~~~~~~~~~KPvv~~~~ 80 (430)
||+|..+..++...|+...+.+|||.++|++|.|-+..+.+||.++-|+++||.++.+|....|..+.++.+||+|++..
T Consensus 171 msnE~nn~isrtt~g~~egiaiggd~~pgSTl~dhi~r~q~~~~vk~Iv~Lgevgg~~ey~~~e~~k~g~~tkPlVaw~~ 250 (600)
T KOG1254|consen 171 MSNELNNIISRTTDGPYEGIAIGGDRYPGSTLIDHIPREQHDPLVKFIVVLGEVGGDEEYTFLEANKEGKITKPLVAWCI 250 (600)
T ss_pred cchhhhhhhhheeccceeeeeccCCCccCchHhhhhhhhhccChhheEEeehhhcccceeehhhhhhcCCccCCEEEEec
Confidence 68999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred CCcccccccccccccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhh
Q 014132 81 GTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDL 160 (430)
Q Consensus 81 G~~~~~~p~g~~~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e~~~~~~~~~~ 160 (430)
|.++.+||...+++|+|+.+....+++++|.++++++|+.+.+++++|...++..|+.++..|-..|..|..++.+|++.
T Consensus 251 gtcA~~F~~evqfghagtaa~~~~eka~akn~al~~ag~~vpesf~~l~~~i~~~~e~lv~~Grvvp~~Ev~pp~lp~d~ 330 (600)
T KOG1254|consen 251 GTCADMFPLEVQFGHAGTAAFKNGEKAAAKNQALRDAGATVPESFDALGADIQETYEFLVPFGRVVPKTEVPPPGLPEDT 330 (600)
T ss_pred CccccccchhhhccccchhhhcchhhhhhcchhhhhccccCccchhhhhhhhccchhcccccceecCcccCCCCCCChhh
Confidence 99999999999999999998888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcchhhHHHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCc
Q 014132 161 NTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVS 240 (430)
Q Consensus 161 ~~~~l~ak~p~i~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~S 240 (430)
.+.+.++.++.-..+|+.|++.+|.+++|.|...+......+.....+.++|+.++.++...+.+|.++.+.+|||..+|
T Consensus 331 saalklgllr~p~~i~t~Ia~~rGaeviYA~~p~~~~~a~elG~gg~~Sllw~~~~lp~Ya~kfie~~~m~~aDhgp~Vs 410 (600)
T KOG1254|consen 331 SAALKLGLLRKPGRIWTSIAGGRGAEVIYADVPISLGYASELGNGGVYSLLWFQRRLPQYARKFIEICTMLTADHGPAVS 410 (600)
T ss_pred hhHhhhccccCCceEEEEecCCCCceeeecCchhhhhhHhhccccceEccccccccchHHHHHHHHHHhhccCCCCceeE
Confidence 99999999999999999999999999999998887766666566667778888888888888999999999999999999
Q ss_pred chhHHHHhhccCCChHHHHHHhhhccCCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCcH
Q 014132 241 GAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDK 320 (430)
Q Consensus 241 t~~aar~~aSt~a~~~~av~Agl~a~Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~~DP 320 (430)
-++-..+.+.+++++++++++||+..|++.||+...+.|.+....+.+-.+-+++.++++.+.+|||.||++-...++|-
T Consensus 411 ga~ntI~~~ra~kdl~sslv~gLltigdRfggald~aaR~f~~ayd~GL~~m~fv~~~~k~~~~V~Gighriksi~n~d~ 490 (600)
T KOG1254|consen 411 GAGNTIANFRAGKDLFSSLVRGLLTIGDRFGGALDIAARRFGPAYDKGLAPMRFVGKMRKVPIEVYGIGHRIKSINNPDK 490 (600)
T ss_pred eccCceEEeccHHHHHHHHHHHHhhhhhhhcchhhHHHHhcChhhhccCchHHHhhhhhCCCceecCCcceeeccCCccc
Confidence 98888888999999999999999999999999999999999998888778899999999999999999999998889999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcchhhhhhh
Q 014132 321 RVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLAR 400 (430)
Q Consensus 321 Ra~~L~~~~~~~~~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R 400 (430)
|.+++++++++.++..|+++++.++|++...++.||..|||+++|++|.||-..++|||.+|++|++..+..+++|+++|
T Consensus 491 rv~~lk~~~~~~fp~~~~~~yal~ve~~t~~k~~nlilnvdg~i~~~fvd~l~~~g~ft~~e~~e~i~ig~lng~fvl~r 570 (600)
T KOG1254|consen 491 RVEILKAFARKNFPATPLLDYALEVEKITTSKKPNLILNVDGAIAVLFVDLLRNSGMFTKEEADEYINIGALNGLFVLGR 570 (600)
T ss_pred chhhHHHHHHhhCCCchHHHhhhhheeeeccCCCCEEEeccchhHHHHHHHHhccCCccHHHhhhheecccccceEEeee
Confidence 99999999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHhhhhcCCCCCCCCcCcccCC
Q 014132 401 SIGLIGHTFDQKRLKQPLYRHPWEDVLYTK 430 (430)
Q Consensus 401 ~~GwiAH~~Eq~~~~~P~~r~~~~~~~Y~~ 430 (430)
+.|+|.|+++|+++.+|++|++||++.|++
T Consensus 571 sig~igh~~dqkrlkq~lyrhpwdd~~y~~ 600 (600)
T KOG1254|consen 571 SIGFIGHYLDQKRLKQGLYRHPWDDISYVK 600 (600)
T ss_pred ecchhhhhccHhhhhCccccCCchhhhhcC
Confidence 999999999999999999999999999985
No 25
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some typ
Probab=100.00 E-value=5.3e-58 Score=469.88 Aligned_cols=324 Identities=20% Similarity=0.291 Sum_probs=247.4
Q ss_pred ccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHH-H-HHHHHcCCCCCCEEEEecCCcccccccccccccccccccCC
Q 014132 26 VFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYS-L-VEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGE 103 (430)
Q Consensus 26 ~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~-~-a~~~~~~~~~KPvv~~~~G~~~~~~p~g~~~gHagai~~~~ 103 (430)
.|.|.++.|+.+. ..-+++-..++.||.|..+|.+ . .++.+.+..+..|..++... |.. .|.-
T Consensus 52 ~YRGy~i~dLa~~-~sfEEva~LL~~G~lP~~~el~~f~~~L~~~~~lp~~v~~~i~~~-----p~~---~~pm------ 116 (400)
T cd06114 52 RYRGYPIEQLAEK-SSFLEVCYLLLYGELPTAEQLQEFREEITRHTLVHEQMKRFFNGF-----PRD---AHPM------ 116 (400)
T ss_pred EECCccHHHHHhc-CCHHHHHHHHHcCcCCCHHHHHHHHHHHHHccCCCHHHHHHHHhc-----ccC---CCHH------
Confidence 6899999999984 2345566778999999876644 2 22322222333333322111 111 1221
Q ss_pred cCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhHHHHHhcchhhHHHHHHhhccCC
Q 014132 104 MESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDR 183 (430)
Q Consensus 104 ~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~l~ak~p~i~a~~~~i~~~~ 183 (430)
+++..+-..+ +.++|..++........+++++|+|++|+|++++|+ ++.
T Consensus 117 -----------------------~~l~~~vs~l------~~~d~~~~~~~~~~~~~~~a~~lia~~p~i~a~~~r--~~~ 165 (400)
T cd06114 117 -----------------------AILSAMVNAL------SAFYPDSLDVNDPEQRELAAIRLIAKVPTIAAMAYR--YSI 165 (400)
T ss_pred -----------------------HHHHHHHHHH------hhcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHH--HHc
Confidence 1111111111 223333232222223356789999999999999999 566
Q ss_pred CCcccccCCCcchhhhccCCHHHHHHHhhhCC-----CCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhccCCChHHH
Q 014132 184 GEEPCYAGVPMSSIVEQGYGVGDVISLLWFKR-----SLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSS 258 (430)
Q Consensus 184 g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~-----~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aSt~a~~~~a 258 (430)
|++++.++.++++ .+||++|+ +|+ +|++.++++||++||||||||+|+|| |++|+++||++|+|+|
T Consensus 166 g~~~~~p~~~ls~-------a~nfl~ml-~g~~~~~~~p~~~~~~~l~~~LvL~aDH~~n~ST-faaRv~aSt~adl~sa 236 (400)
T cd06114 166 GQPFIYPDNDLSY-------VENFLHMM-FAVPYEPYEVDPVVVKALDTILILHADHEQNAST-STVRMVGSSGANLFAS 236 (400)
T ss_pred CCCCCCCCCCcCH-------HHHHHHHh-cCCCCccCCCCHHHHHHHHHHHeeeccCCCcchH-HHHHHHhccCCcHHHH
Confidence 8888888887766 56677666 676 67888999999999999999999999 9999999999999999
Q ss_pred HHHhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcC--CCCCCCCCCCCCCCCCcHHHHHHHHHHHHh---
Q 014132 259 LVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKG--IRVPGIGHRIKRGDNRDKRVELLQKFARTH--- 332 (430)
Q Consensus 259 v~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~--~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~--- 332 (430)
++||++++ ||+||||++.|++||+++.+. +++++||++.++++ ++|||||||+|+ +.|||+++|+++++++
T Consensus 237 v~agl~al~GplHGGA~~~v~~~l~~i~~~-~~~~~~v~~~l~~~~~~~ipGfGH~vyk--~~DPRa~~L~~~~~~l~~~ 313 (400)
T cd06114 237 ISAGIAALWGPLHGGANEAVLEMLEEIGSV-GNVDKYIAKAKDKNDPFRLMGFGHRVYK--NYDPRAKILKKTCDEVLAE 313 (400)
T ss_pred HHHHHHhccCCcccChHHHHHHHHHHhcCc-ccHHHHHHHHHhcCCCccccCCCCCCCC--CCCccHHHHHHHHHHHHHH
Confidence 99999998 999999999999999999877 68999999999887 599999999998 4699999999998775
Q ss_pred -CCCChHHHHHHHHHHHHhhc----cCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcchhhhhhhhhhhhhh
Q 014132 333 -FPSVKYMEYAVQVETYTLSK----ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGH 407 (430)
Q Consensus 333 -~~~~~~~~~a~~~e~~~~~~----~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R~~GwiAH 407 (430)
...++++++++++|+++.++ .++++||||||+|++++.||+|.++||+ +|++||++||+||
T Consensus 314 ~~~~~~~~~~~~~ie~~~~~~~~~~~~~l~pNvD~~~a~l~~~lG~p~~~~~~--------------lFa~sR~~Gw~AH 379 (400)
T cd06114 314 LGKDDPLLEIAMELEEIALKDDYFIERKLYPNVDFYSGIILRALGIPTEMFTV--------------LFALGRTPGWIAQ 379 (400)
T ss_pred hCCCcHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHcCCChHhhhh--------------hHHHHhHHHHHHH
Confidence 34578999999999965432 5999999999999999999999999987 9999999999999
Q ss_pred HHHhhhhc-CCCCCC
Q 014132 408 TFDQKRLK-QPLYRH 421 (430)
Q Consensus 408 ~~Eq~~~~-~P~~r~ 421 (430)
|+||++.+ ..+.||
T Consensus 380 ~~Eq~~~~~~~liRP 394 (400)
T cd06114 380 WREMHEDPELKIGRP 394 (400)
T ss_pred HHHHHhCCCCceeCc
Confidence 99998642 234444
No 26
>PRK14032 citrate synthase; Provisional
Probab=100.00 E-value=6e-58 Score=474.13 Aligned_cols=260 Identities=18% Similarity=0.242 Sum_probs=212.6
Q ss_pred CCCCCCCCCCCCCCchhhHHHHHhcchhhHHHHHHhhcc-CC-CCc--ccccCCCcchhhhccCCHHHHHHHhhhCC-CC
Q 014132 143 GKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISD-DR-GEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKR-SL 217 (430)
Q Consensus 143 g~~~~~~e~~~~~~~~~~~~~~l~ak~p~i~a~~~~i~~-~~-g~~--~~~~g~dl~~li~~~~s~~~~l~~l~~~~-~~ 217 (430)
+.++|..++..++ ...+++++|+||+|+|++++||+.. .. |++ +..|+.++++ .+||++|+ +|. +|
T Consensus 150 ~~~~~~~~~~~~~-~~~~~a~rLiA~~p~i~A~~yr~~~~~~~g~~~~~~~p~~~ls~-------a~nfl~ml-~g~~~p 220 (447)
T PRK14032 150 YSYDDNPDDTSID-NVLRQSISLIARFPTLAVYAYQAYRHYHDGKSLYIHPPKPELST-------AENILYML-RPDNKY 220 (447)
T ss_pred hhcCCCcccCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccCCCCCCCH-------HHHHHHHh-ccCCCC
Confidence 3344543333343 3346789999999999999999642 33 555 4467777765 55566666 677 78
Q ss_pred chhHHHHHHHHHHHhccCC-CCCcchhHHHHhhccCCChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhc------cCC
Q 014132 218 PRYCTQFIEICIMLCADHG-PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD------RGL 289 (430)
Q Consensus 218 ~~~~~~~l~~~lvl~aDHg-~~~St~~aar~~aSt~a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~------~~~ 289 (430)
++.++++||++|||||||| +|+|| |++|+++||++|+|+|++||++++ ||+||||+++|++||+++.+ +.+
T Consensus 221 ~~~~~~~ld~~LiL~ADHg~~naST-faaRv~aSt~ad~ysavaagi~aL~GplHGGA~e~v~~~l~ei~~~~~~~~s~~ 299 (447)
T PRK14032 221 TELEARLLDLALVLHAEHGGGNNST-FTTRVVSSSGTDTYSAIAAAIGSLKGPKHGGANIKVMEMFEDIKENVKDWEDED 299 (447)
T ss_pred CHHHHHHHHHHHHHHhccCCCchhH-HHHHHHHccCCcHHHHHHHHHHhccCccccCHHHHHHHHHHHHHhhccCCCCHH
Confidence 8899999999999999999 79999 999999999999999999999998 99999999999999999973 224
Q ss_pred CHHHHHHHHHH-----cCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhh-------ccC
Q 014132 290 SAYEFVESMKK-----KGIRVPGIGHRIKRGDNRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLS-------KAN 354 (430)
Q Consensus 290 ~~~~~v~~~~~-----~~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~~e~~~~~-------~~~ 354 (430)
++++|+++.++ ++++|||||||+|+ +.|||+++|+++++++. ...+++++++.+|+++.+ ..|
T Consensus 300 ~v~~~v~~~l~~~~~~~~~ri~GFGHrvyk--~~DPRa~~L~~~~~~l~~~~g~~~~~~~~~~~e~~~~~~~~~~~~~~k 377 (447)
T PRK14032 300 EIADYLTKILNKEAFDKSGLIYGMGHAVYT--ISDPRAVILKKFAEKLAKEKGREEEFNLYEKIEKLAPELIAEERGIYK 377 (447)
T ss_pred HHHHHHHHHHhccccccCCcccCCCCCCCC--CCCccHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhccCC
Confidence 68889998886 56899999999997 47999999999999884 335678888888876532 258
Q ss_pred CcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcchhhhhhhhhhhhhhHHHhh-h---hcCCCCCCCCcCccc
Q 014132 355 NLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQK-R---LKQPLYRHPWEDVLY 428 (430)
Q Consensus 355 ~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R~~GwiAH~~Eq~-~---~~~P~~r~~~~~~~Y 428 (430)
+++||||||+|+++++||||.++||+ +|++||++||+|||+||+ + +.||...|.-..-.|
T Consensus 378 ~l~pNVDfysa~i~~~lGip~~~~t~--------------lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~YvG~~~~~ 441 (447)
T PRK14032 378 GVSANVDFYSGFVYDMLGIPEELYTP--------------LFAIARIVGWSAHRIEELVNGGKIIRPAYKSVLERREY 441 (447)
T ss_pred CCCcChhhHHHHHHHHcCCChhhhhh--------------hHHHHhHHHHHHHHHHHHhcCCceecccceeeCCCCCC
Confidence 99999999999999999999999998 999999999999999998 3 346666664434444
No 27
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=100.00 E-value=3.9e-57 Score=464.21 Aligned_cols=253 Identities=18% Similarity=0.243 Sum_probs=207.3
Q ss_pred CCCCCCCCCCCCCCchhhHHHHHhcchhhHHHHHHhhcc--CCCC--cccccCCCcchhhhccCCHHHHHHHhhhC-CCC
Q 014132 143 GKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISD--DRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFK-RSL 217 (430)
Q Consensus 143 g~~~~~~e~~~~~~~~~~~~~~l~ak~p~i~a~~~~i~~--~~g~--~~~~~g~dl~~li~~~~s~~~~l~~l~~~-~~~ 217 (430)
+.++|..++..++ ...+++++|+|++|+|++++||+.. ..++ ++..|+.++++ .+||++|+ +| ++|
T Consensus 120 ~~~~~~~~~~~~~-~~~~~a~rLiA~~p~i~A~~yr~~~~~~~~~~~~~~~p~~~ls~-------a~nfl~ml-~g~~~p 190 (406)
T cd06113 120 YSYDDKPDDISLE-NVLRQSIQLIARLPTIAVYAYQAKRHYYDGESLYIHHPQPELST-------AENILSML-RPDKKY 190 (406)
T ss_pred cccCCCcccCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCCCCH-------HHHHHHHh-ccCCCC
Confidence 3344443333332 3356789999999999999999632 2333 35567777655 45555555 67 478
Q ss_pred chhHHHHHHHHHHHhccCC-CCCcchhHHHHhhccCCChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhc------cCC
Q 014132 218 PRYCTQFIEICIMLCADHG-PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD------RGL 289 (430)
Q Consensus 218 ~~~~~~~l~~~lvl~aDHg-~~~St~~aar~~aSt~a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~------~~~ 289 (430)
++.++++||++|||||||| +|+|| |++|+++||++|+|+|++||++++ ||+||||+++|++||+++.+ +.+
T Consensus 191 ~~~~~~~l~~~Lvl~ADHg~~naST-~aaRv~aSt~ad~~~avaagi~al~GplHGGA~e~v~~~l~~i~~~~~~~~~~~ 269 (406)
T cd06113 191 TELEAKLLDLCLVLHAEHGGGNNST-FTTRVVSSSGTDTYSAIAAAIGSLKGPRHGGANIKVMEMLEDIKENVKDWTDED 269 (406)
T ss_pred CHHHHHHHHHHHhhhhccCCCcchH-HHHHHHHccCCCHHHHHHHHHHHccCccccChHHHHHHHHHHHHhhccCCCCHH
Confidence 8899999999999999999 89999 999999999999999999999998 99999999999999999974 225
Q ss_pred CHHHHHHHHHHcC-----CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHh-------hccC
Q 014132 290 SAYEFVESMKKKG-----IRVPGIGHRIKRGDNRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTL-------SKAN 354 (430)
Q Consensus 290 ~~~~~v~~~~~~~-----~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~~e~~~~-------~~~~ 354 (430)
++++|+++.++++ ++|||||||+|+. .|||+++|+++++++. ..+++++++.++|+++. .+.|
T Consensus 270 ~v~~~v~~~l~~~~~~~~~~l~GFGHrvyk~--~DPRa~~L~~~~~~l~~~~~~~~~~~~~~~ie~~~~~~~~~~~~~~r 347 (406)
T cd06113 270 EVRAYLRKILNKEAFDKSGLIYGMGHAVYTL--SDPRAVVLKKYARSLAKEKGREEEFALYERIERLAPEVIAEERGIGK 347 (406)
T ss_pred HHHHHHHHHHhccccccCceeecCCCCCCCC--CCccHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhhccCC
Confidence 7888999988776 5999999999984 6999999999998874 33569999999998653 2358
Q ss_pred CcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcchhhhhhhhhhhhhhHHHhhhhcCCCCCC
Q 014132 355 NLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRH 421 (430)
Q Consensus 355 ~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R~~GwiAH~~Eq~~~~~P~~r~ 421 (430)
+++||||||+|+++++||||.++||+ +|++||++||+|||+||+.....+.||
T Consensus 348 ~l~pNvD~~sa~l~~~lG~p~~~~t~--------------lF~isR~~Gw~AH~~Eq~~~~~~l~RP 400 (406)
T cd06113 348 TVCANVDFYSGFVYKMLGIPQELYTP--------------LFAVARIVGWCAHRIEELLNSGRIIRP 400 (406)
T ss_pred CCCCChHHHHHHHHHHcCCChhhhhh--------------HHHHHhHHHHHHHHHHHHhcCCceecc
Confidence 99999999999999999999999998 999999999999999997533334444
No 28
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the
Probab=100.00 E-value=6.5e-57 Score=439.92 Aligned_cols=233 Identities=23% Similarity=0.331 Sum_probs=208.5
Q ss_pred HHHHHHhhccCCCC--cccccCCCcchhhhccCCHHHHHHHhhhCCCC---------------chhHHHHHHHHHHHhcc
Q 014132 172 PTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSL---------------PRYCTQFIEICIMLCAD 234 (430)
Q Consensus 172 i~a~~~~i~~~~g~--~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~---------------~~~~~~~l~~~lvl~aD 234 (430)
+++..++|+...++ .+.|||||+.+|+++. ||.++.++||+|+.| +++++++||++|||+||
T Consensus 6 ~~~~~t~is~id~~~g~l~yRGy~i~dL~~~~-~f~ev~~LL~~G~lP~~~~nfl~m~~g~~p~~~~~~~l~~~Lvl~aD 84 (265)
T cd06101 6 VAALESEISVIDGDEGGLRYRGYPIEELAENS-SFEEVAYLLLTGELPSYAENFLYMLGGEEPDPEFAKAMDLALILHAD 84 (265)
T ss_pred cceeeeEEEEEeCCCCEEEECCeeHHHHHhcC-CHHHHHHHHHcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcC
Confidence 34455677765555 6999999999999987 999999999988765 67899999999999999
Q ss_pred CCCCCcchhHHHHhhccCCChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhcc-CCCHHHHHHHHHHcCCCCCCCCCCC
Q 014132 235 HGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDR-GLSAYEFVESMKKKGIRVPGIGHRI 312 (430)
Q Consensus 235 Hg~~~St~~aar~~aSt~a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~-~~~~~~~v~~~~~~~~~ipGFGH~v 312 (430)
||+|+|| |++|+++||++|+|+|++||++++ ||+||||++.|++||+++.+. .++++++|.+.++++++|||||||+
T Consensus 85 Hg~naST-~aaRv~aSt~ad~~~av~agl~al~Gp~HGGA~e~~~~~l~~i~~~~~~~~~~~v~~~~~~~~~i~GFGH~v 163 (265)
T cd06101 85 HEGNAST-FTARVVGSTLSDPYSAIAAAIAALKGPLHGGANEAVLKMLEEIGTPKNEPAEAYIRKKLNSKRVLMGFGHRV 163 (265)
T ss_pred CCCchHH-HHHHHHHccCCcHHHHHHHHHHhCCCCCcCCHHHHHHHHHHHhCccccccHHHHHHHHHhcCCCccCCCCCC
Confidence 9999999 999999999999999999999998 999999999999999999864 1478999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHhhc--cCCcccchhhHHHHHHHHhccCCCCCchhhhHHHH
Q 014132 313 KRGDNRDKRVELLQKFARTHFP---SVKYMEYAVQVETYTLSK--ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIV 387 (430)
Q Consensus 313 y~~~~~DPRa~~L~~~~~~~~~---~~~~~~~a~~~e~~~~~~--~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~ 387 (430)
|+ +.|||++.|+++++++.. .++++++++++|+++.+. .|+++||||||+|+++++||||.++||+
T Consensus 164 y~--~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~~e~~~~~~~~~k~l~pNvd~~~a~v~~~lG~p~~~~~~------- 234 (265)
T cd06101 164 YK--KYDPRATVLKKFAEKLLKEKGLDPMFELAAELEKIAPEVLYEKKLYPNVDFYSGVLYKAMGFPTELFTP------- 234 (265)
T ss_pred CC--CCCCChHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHhCCChHhhhh-------
Confidence 97 469999999999999854 589999999999988664 3899999999999999999999999987
Q ss_pred hhhhcchhhhhhhhhhhhhhHHHhhhhcCCCCCCC
Q 014132 388 EIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP 422 (430)
Q Consensus 388 p~~~~~~lf~~~R~~GwiAH~~Eq~~~~~P~~r~~ 422 (430)
+|+++|++||+||++||++.+..+.||.
T Consensus 235 -------lf~i~R~~Gw~AH~~Eq~~~~~~i~RP~ 262 (265)
T cd06101 235 -------LFAVSRAVGWLAHLIEQREDGQRIIRPR 262 (265)
T ss_pred -------HHHHHhHhHHHHHHHHHHhcCCCccCCC
Confidence 9999999999999999997663456653
No 29
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=100.00 E-value=2.4e-56 Score=452.88 Aligned_cols=233 Identities=18% Similarity=0.261 Sum_probs=207.8
Q ss_pred hhHHHHHhcchhhHHHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCC
Q 014132 159 DLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPC 238 (430)
Q Consensus 159 ~~~~~~l~ak~p~i~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~ 238 (430)
.+.++++++++|+|++++|+ ++.|.+++.|..++++ .+||++|+ +|..|+++++++||++|||+||||+|
T Consensus 114 ~~~a~~lia~~~~i~a~~~~--~~~g~~~~~p~~~ls~-------a~nfl~m~-~g~~p~~~~~~~l~~~Lvl~ADHg~n 183 (362)
T cd06111 114 LAKAIRLLAQLPTVVAADIR--RRKGLDPIPPDSDLGI-------AENFLHMC-FGEVPSPEVVRAFDVSLILYAEHSFN 183 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HcCCCCCcCCCCCcCH-------HHHHHHHh-hCCCCCHHHHHHHHHHHHHHhccCCc
Confidence 46788999999999999998 5678787777766654 45555555 68888899999999999999999999
Q ss_pred CcchhHHHHhhccCCChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 014132 239 VSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDN 317 (430)
Q Consensus 239 ~St~~aar~~aSt~a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~ 317 (430)
+|| |++|+++||++|+|+|++||++++ ||+||||++.|++||+++.+. ++++++|++.+++|++|||||||+|+.
T Consensus 184 ~St-~aaR~~aSt~ad~~~av~agl~aL~GplHGGA~~~~~~~l~ei~~~-~~~~~~v~~~~~~~~~l~GFGH~vyk~-- 259 (362)
T cd06111 184 AST-FTARVITSTLSDIYSAITGAIGALKGPLHGGANEAVMHMMLEIDDP-EKAAQWMLDALARKEKVMGFGHRVYKS-- 259 (362)
T ss_pred hhH-HHHHHHHccCCCHHHHHHHHHhhccCccccchHHHHHHHHHHhCCh-hhHHHHHHHHHhcCCceecCCCCCCCC--
Confidence 999 999999999999999999999998 999999999999999999876 589999999999999999999999984
Q ss_pred CcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcch
Q 014132 318 RDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNG 394 (430)
Q Consensus 318 ~DPRa~~L~~~~~~~~---~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~ 394 (430)
.|||+++|+++++++. ..++++++++++++++.+ .++++||||||+|+++++||||.++||+
T Consensus 260 ~DPRa~~L~~~l~~l~~~~~~~~~~~~~~~i~~~~~~-~~~l~pNvD~~~a~l~~~lG~p~~~~~~-------------- 324 (362)
T cd06111 260 GDSRVPTMEKALRRVAAVHDGQKWLAMYDALEDAMVA-AKGIKPNLDFPAGPAYYLMGFDIDFFTP-------------- 324 (362)
T ss_pred CCchHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHH-hcCCCCChHHHHHHHHHHcCcChhhhhh--------------
Confidence 6999999999888763 356899999999998865 6899999999999999999999999987
Q ss_pred hhhhhhhhhhhhhHHHhhhhcCCCCCC
Q 014132 395 LFVLARSIGLIGHTFDQKRLKQPLYRH 421 (430)
Q Consensus 395 lf~~~R~~GwiAH~~Eq~~~~~P~~r~ 421 (430)
+|++||++||+|||+||++.+ ++.|+
T Consensus 325 lf~~~R~~Gw~AH~~Eq~~~~-~l~Rp 350 (362)
T cd06111 325 IFVMARITGWTAHIMEQRADN-ALIRP 350 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHcC-CcccC
Confidence 999999999999999998643 45555
No 30
>PRK14033 citrate synthase; Provisional
Probab=100.00 E-value=1.1e-55 Score=449.74 Aligned_cols=243 Identities=18% Similarity=0.255 Sum_probs=211.0
Q ss_pred CCCCCCCCCCCCCCchhhHHHHHhcchhhHHHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHH
Q 014132 143 GKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCT 222 (430)
Q Consensus 143 g~~~~~~e~~~~~~~~~~~~~~l~ak~p~i~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~ 222 (430)
+.++|..++..++ ...+.++++++++|+|++++|+ +..|.+++.++.+++ +++++++|++|..|++.++
T Consensus 109 ~~~d~~~~~~~~~-~~~~~a~~lia~~~~i~a~~~~--~~~g~~~~~p~~~~s--------~a~nfl~ml~g~~p~~~~~ 177 (375)
T PRK14033 109 GAEDPEADDSSPE-ANLAKALRLFAVLPTIVAADQR--RRRGLDPIAPRSDLG--------YAENFLHMCFGEVPEPEVV 177 (375)
T ss_pred ccCCcccccCCHH-HHHHHHHHHHHHHHHHHHHHHH--hcCCCCccCCCCCCC--------HHHHHHHHHhCCCCCHHHH
Confidence 3344443333332 2346788999999999999999 567888887777664 4554444547888899999
Q ss_pred HHHHHHHHHhccCCCCCcchhHHHHhhccCCChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHc
Q 014132 223 QFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKK 301 (430)
Q Consensus 223 ~~l~~~lvl~aDHg~~~St~~aar~~aSt~a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~ 301 (430)
++||++|||+||||+|+|| |++|+++||++|+|+||+||++++ ||+||||++.|++||+++.+. ++++++|++.+++
T Consensus 178 ~~l~~~Lvl~ADHgln~St-faaRv~aSt~adl~~av~agl~al~GplHGGA~e~~~~~l~ei~~~-~~~~~~v~~~~~~ 255 (375)
T PRK14033 178 RAFEVSLILYAEHSFNAST-FTARVITSTLSDIYSAVTGAIGALKGPLHGGANEAVMHTMLEIGDP-ARAAEWLRDALAR 255 (375)
T ss_pred HHHHHHHHHHhccCCCcHH-HHHHHHhccCCCHHHHHHHHHhhccCccccChHHHHHHHHHHhCCh-hHHHHHHHHHHhC
Confidence 9999999999999999999 899999999999999999999998 999999999999999999876 5899999999999
Q ss_pred CCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhccCCCCC
Q 014132 302 GIRVPGIGHRIKRGDNRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMF 378 (430)
Q Consensus 302 ~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~f 378 (430)
|++|||||||+|+. .|||+++|+++++++. ..++++++++++++++.+ .++++||||||+|+++++||||.++|
T Consensus 256 ~~~l~GFGH~vyk~--~DPRa~~L~~~l~~l~~~~~~~~~~~~~~~i~~~~~~-~~gl~pNvD~~~a~l~~~lGip~~~~ 332 (375)
T PRK14033 256 KEKVMGFGHRVYKH--GDSRVPTMKAALRRVAAVRDGQRWLDIYEALEKAMAE-ATGIKPNLDFPAGPAYYLMGFDIDFF 332 (375)
T ss_pred CCceecCCCCCCCC--CCchHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHcCcCchhh
Confidence 99999999999984 6999999999888874 357899999999998865 68999999999999999999999999
Q ss_pred chhhhHHHHhhhhcchhhhhhhhhhhhhhHHHhhhhc
Q 014132 379 SKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLK 415 (430)
Q Consensus 379 t~~e~~~~~p~~~~~~lf~~~R~~GwiAH~~Eq~~~~ 415 (430)
|+ +|++||++||+|||+||++.+
T Consensus 333 ~~--------------lf~~~R~~Gw~AH~~Eq~~~~ 355 (375)
T PRK14033 333 TP--------------IFVMSRITGWTAHIMEQRASN 355 (375)
T ss_pred hH--------------HHHHHHHHHHHHHHHHHHhcC
Confidence 87 999999999999999998643
No 31
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=100.00 E-value=1.9e-55 Score=447.77 Aligned_cols=228 Identities=20% Similarity=0.260 Sum_probs=205.6
Q ss_pred hhhHHHHHhcchhhHHHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCC
Q 014132 158 EDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGP 237 (430)
Q Consensus 158 ~~~~~~~l~ak~p~i~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~ 237 (430)
..++++++++++|+|++++|+ ++.|++++.|..++++ ..|+++|+ +|.+|++.++++||++||||||||+
T Consensus 113 ~~~~a~~lia~~p~i~a~~~~--~~~g~~~~~p~~~~~~-------~~n~l~ml-~g~~p~~~~~~~l~~~Lvl~ADHg~ 182 (368)
T TIGR01800 113 ARDIAIRLIAKLPTIVAYWYR--IRNGLEIVAPKEDDSH-------AANFLYML-HGEEPSKEEEKAMDIALILYAEHEF 182 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhcCCCCcCCCCCccH-------HHHHHHHh-cCCCCCHHHHHHHHHHHhHhccCCC
Confidence 356788999999999999999 4567888887776543 33556665 6888899999999999999999999
Q ss_pred CCcchhHHHHhhccCCChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 014132 238 CVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGD 316 (430)
Q Consensus 238 ~~St~~aar~~aSt~a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~ 316 (430)
|+|| |++|+++||++|+|+|++||++++ ||+||||++.|++||+++.+. ++++++|++.+++|++|||||||+|+
T Consensus 183 n~St-~aaRv~aSt~adl~~av~agl~al~Gp~HGGA~~~~~~~l~~i~~~-~~~~~~v~~~l~~~~~i~GfGH~vy~-- 258 (368)
T TIGR01800 183 NAST-FAARVAASTLSDMYSAITAAIGALKGPLHGGANEAVMAMLDEIGDP-DKAEAWIRKALENKERIMGFGHRVYK-- 258 (368)
T ss_pred chHH-HHHHHHhccCCCHHHHHHHHHhhcCCccccCHHHHHHHHHHHhcCh-HHHHHHHHHHHHCCCccCCCCCCCCC--
Confidence 9999 999999999999999999999998 999999999999999999876 58999999999999999999999998
Q ss_pred CCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcc
Q 014132 317 NRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLN 393 (430)
Q Consensus 317 ~~DPRa~~L~~~~~~~~---~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~ 393 (430)
+.|||++.|+++++++. ..++++++++++++++.+ .++++||||||+|+++++||||.++||+
T Consensus 259 ~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~pNvD~~~a~l~~~lg~p~~~~~~------------- 324 (368)
T TIGR01800 259 TYDPRAKILKEYAKKLSAKEGDSKWYEIAERLEDVMEK-EKGIYPNVDFYSGSVYYSMGIPTDLFTP------------- 324 (368)
T ss_pred CCCchHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH-hcCCCCChHHHHHHHHHHcCcCHHHhhh-------------
Confidence 47999999999999874 467899999999998865 6899999999999999999999999887
Q ss_pred hhhhhhhhhhhhhhHHHhhhh
Q 014132 394 GLFVLARSIGLIGHTFDQKRL 414 (430)
Q Consensus 394 ~lf~~~R~~GwiAH~~Eq~~~ 414 (430)
+|++||++||+|||+||++.
T Consensus 325 -lf~~~R~~Gw~AH~~Eq~~~ 344 (368)
T TIGR01800 325 -IFAMSRVSGWTAHIIEQVEN 344 (368)
T ss_pred -HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999853
No 32
>PRK12349 citrate synthase 3; Provisional
Probab=100.00 E-value=1.3e-55 Score=448.65 Aligned_cols=242 Identities=17% Similarity=0.158 Sum_probs=208.2
Q ss_pred CCCCCCCCCCCCCchhhHHHHHhcchhhHHHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHH
Q 014132 144 KIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQ 223 (430)
Q Consensus 144 ~~~~~~e~~~~~~~~~~~~~~l~ak~p~i~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~ 223 (430)
.++|...+.+++.. ..+++++++++|+|++++|| +..|++++.|..++++ ..||++|+ +|.+|++.+++
T Consensus 106 ~~d~~~~~~~~~~~-~~~a~~lia~~p~i~a~~~r--~~~g~~~~~p~~~l~~-------a~nfl~ml-~g~~p~~~~~~ 174 (369)
T PRK12349 106 GYDNDIEDRSLEVN-KSRAYKLLSKVPNIVANSYH--ILNNEEPIEPLKELSY-------SANFLYML-TGKKPTELEEK 174 (369)
T ss_pred ccCccccccCcHHH-HHHHHHHHHHHHHHHHHHHH--HhcCCCCCCCCcCCCH-------HHHHHHHH-hCCCCCHHHHH
Confidence 34454444444332 45788999999999999999 4567777777776644 44455555 78889999999
Q ss_pred HHHHHHHHhccCCCCCcchhHHHHhhccCCChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcC
Q 014132 224 FIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKG 302 (430)
Q Consensus 224 ~l~~~lvl~aDHg~~~St~~aar~~aSt~a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~ 302 (430)
+||++|||+||||+|+|| |++|+++||++|+|+|++||++++ ||+||||+++|++||+++.+. ++++++|++.+++|
T Consensus 175 ~~~~~Lvl~ADH~lnaSt-fa~Rv~aSt~ad~~~av~agl~al~GplHGGA~e~~~~~l~~i~~~-~~~~~~v~~~l~~~ 252 (369)
T PRK12349 175 IFDRSLVLYSEHEMPNST-FTARVIASTQSDLYGALTGAVASLKGSLHGGANEAVMYMLLEAGTV-EKFEELLQKKLYNK 252 (369)
T ss_pred HHHHHHHHHhCcCccHHH-HHHHHHHccCccHHHHHHHHHHhccCccccChHHHHHHHHHHcCCH-HHHHHHHHHHHhcC
Confidence 999999999999999999 999999999999999999999998 999999999999999999876 58999999999999
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhccCCCCCc
Q 014132 303 IRVPGIGHRIKRGDNRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFS 379 (430)
Q Consensus 303 ~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft 379 (430)
++|||||||+|+. +.|||+++|+++++++. ...+++++++++++++.+ .++++||||||+|+++++||||.++||
T Consensus 253 ~~i~GFGH~vy~~-~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~~-~~gl~pNvD~~~a~l~~~lG~p~~~~~ 330 (369)
T PRK12349 253 EKIMGFGHRVYMK-KMDPRALMMKEALKQLCDVKGDYTLYEMCEAGEKIMEK-EKGLYPNLDYYAAPVYWMLGIPIQLYT 330 (369)
T ss_pred CcccCCCCCCCCC-CCCCcHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH-hcCCCCCcHHHHHHHHHHcCCChhhhh
Confidence 9999999999942 46999999999988774 234678888889888754 689999999999999999999999988
Q ss_pred hhhhHHHHhhhhcchhhhhhhhhhhhhhHHHhhhh
Q 014132 380 KQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRL 414 (430)
Q Consensus 380 ~~e~~~~~p~~~~~~lf~~~R~~GwiAH~~Eq~~~ 414 (430)
+ +|++||++||+|||+||++.
T Consensus 331 ~--------------lf~i~R~~Gw~AH~~Eq~~~ 351 (369)
T PRK12349 331 P--------------IFFSSRTVGLCAHVIEQHAN 351 (369)
T ss_pred H--------------HHHHHHHHHHHHHHHHHHhc
Confidence 7 99999999999999999864
No 33
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00 E-value=2.3e-55 Score=446.28 Aligned_cols=236 Identities=21% Similarity=0.285 Sum_probs=211.3
Q ss_pred hhHHHHHhcchhhHHHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCC
Q 014132 159 DLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPC 238 (430)
Q Consensus 159 ~~~~~~l~ak~p~i~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~ 238 (430)
..+++++++++|+|++++|+ +..|.++..++.++++ .+++++|+ +|++|++.++++||++|||+||||+|
T Consensus 114 ~~~a~~lia~~~~i~a~~~~--~~~g~~~~~p~~~~~~-------~~~~~~~~-~g~~p~~~~~~~l~~~Lvl~aDH~~n 183 (358)
T cd06118 114 YEKAIRLIAKLPTIAANIYR--NREGLEIIAPDPDLSY-------AENFLYML-FGEEPDPEEAKAMDLALILHADHEGN 183 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhCCCCCCCCCCcccH-------HHHHHHHh-cCCCCCHHHHHHHHHHHhhhcCCCCC
Confidence 45788999999999999999 5678888877776644 44455555 68889999999999999999999999
Q ss_pred CcchhHHHHhhccCCChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 014132 239 VSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDN 317 (430)
Q Consensus 239 ~St~~aar~~aSt~a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~ 317 (430)
+|| |++|+++||++|+|+|++||++++ ||+||||++.|++||+++.+. +++++++++.+++|++|||||||+|+ +
T Consensus 184 ~St-fa~R~~aSt~ad~~~av~agl~al~GplHGGA~~~~~~~l~~~~~~-~~~~~~i~~~l~~~~~i~GfGH~vyk--~ 259 (358)
T cd06118 184 AST-FTARVVASTLSDMYSAIAAAIAALKGPLHGGANEAVLKMLLEIGTP-ENVEAYIWKKLANKRRIMGFGHRVYK--T 259 (358)
T ss_pred hHH-HHHHHHHccCCCHHHHHHHHHHHccCccccChHHHHHHHHHHhCCc-hHHHHHHHHHHhcCCeecCCCCCCCC--C
Confidence 999 999999999999999999999998 999999999999999999876 58999999999999999999999997 4
Q ss_pred CcHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHhhcc--CCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhc
Q 014132 318 RDKRVELLQKFARTHFP---SVKYMEYAVQVETYTLSKA--NNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYL 392 (430)
Q Consensus 318 ~DPRa~~L~~~~~~~~~---~~~~~~~a~~~e~~~~~~~--~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~ 392 (430)
.|||+++|+++++++.. .+++++++.++++++.+.. |+++||||||+|+++++||+|.++||+
T Consensus 260 ~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~r~l~pNvd~~~~~l~~~lg~p~~~~~~------------ 327 (358)
T cd06118 260 YDPRAKILKELAEELAEEKGDDKLFEIAEELEEIALEVLGEKGIYPNVDFYSGVVYKALGFPTELFTP------------ 327 (358)
T ss_pred CCCchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCCCCCcChHHHHHHHHHHcCcCHHHHhH------------
Confidence 79999999999998854 5899999999999887643 699999999999999999999999887
Q ss_pred chhhhhhhhhhhhhhHHHhhhhcCCCCCCC
Q 014132 393 NGLFVLARSIGLIGHTFDQKRLKQPLYRHP 422 (430)
Q Consensus 393 ~~lf~~~R~~GwiAH~~Eq~~~~~P~~r~~ 422 (430)
+|++||++||+||++||++.+.++.||.
T Consensus 328 --lf~i~R~~Gw~AH~~Eq~~~~~~iiRP~ 355 (358)
T cd06118 328 --LFAVSRAVGWLAHIIEYRENNQRLIRPR 355 (358)
T ss_pred --HHHHHHHhHHHHHHHHHHhCCCCccCCc
Confidence 9999999999999999997654566663
No 34
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=100.00 E-value=5.5e-55 Score=443.01 Aligned_cols=233 Identities=19% Similarity=0.229 Sum_probs=206.7
Q ss_pred hhHHHHHhcchhhHHHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCC
Q 014132 159 DLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPC 238 (430)
Q Consensus 159 ~~~~~~l~ak~p~i~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~ 238 (430)
.++++++++++|+|++++|+ +..|.+++.++.+++ +++.++++++|+.|++.++++||++|||+||||+|
T Consensus 114 ~~~a~~lla~~p~i~a~~~~--~~~~~~~~~p~~~~~--------~a~~~l~~l~g~~p~~~~~~~l~~~Lvl~aDHg~n 183 (356)
T cd06110 114 LRKAIRLIAKMPTIVAAFHR--IRNGLEPVAPDPDLS--------HAANFLYMLTGEKPSEEAARAFDVALILHADHELN 183 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhCCCCCCCCCCCCC--------HHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCc
Confidence 45778999999999999888 566777777776654 55554445578889999999999999999999999
Q ss_pred CcchhHHHHhhccCCChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 014132 239 VSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDN 317 (430)
Q Consensus 239 ~St~~aar~~aSt~a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~ 317 (430)
+|| |++|+++||++|+|+|++||++++ ||+||||++.|++||+++.+. ++++++|+++++++++|||||||+|+ +
T Consensus 184 ~St-fa~Rv~aSt~ad~~~av~agl~al~GplHGgA~~~~~~~l~~~~~~-~~~~~~v~~~~~~~~~i~GfGH~vy~--~ 259 (356)
T cd06110 184 AST-FAARVVASTLSDMYSAVTAAIGALKGPLHGGANERVMKMLLEIGSV-DNVAAYVKDKLANKEKIMGFGHRVYK--T 259 (356)
T ss_pred hhH-HHHHHHHhcCCCHHHHHHHHHhhcCCCcccCcHHHHHHHHHHhCCH-HHHHHHHHHHHhcCCeecCCCCccCC--C
Confidence 999 999999999999999999999998 999999999999999999865 58999999999999999999999998 4
Q ss_pred CcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcch
Q 014132 318 RDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNG 394 (430)
Q Consensus 318 ~DPRa~~L~~~~~~~~---~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~ 394 (430)
.|||+++|+++++++. +.+++++++.++|+++.+ .++++||||||+|+++++||+|.++||+
T Consensus 260 ~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~ie~~~~~-~~~l~pNvd~~~a~l~~~lg~p~~~~~~-------------- 324 (356)
T cd06110 260 GDPRAKHLREMSRRLGKETGEPKWYEMSEAIEQAMRD-EKGLNPNVDFYSASVYYMLGIPVDLFTP-------------- 324 (356)
T ss_pred CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-ccCCCcChHHHHHHHHHHcCcChhhhhH--------------
Confidence 6999999999999984 457899999999998866 5899999999999999999999999887
Q ss_pred hhhhhhhhhhhhhHHHhhhhcCCCCCC
Q 014132 395 LFVLARSIGLIGHTFDQKRLKQPLYRH 421 (430)
Q Consensus 395 lf~~~R~~GwiAH~~Eq~~~~~P~~r~ 421 (430)
+|+++|++||+|||+||++.+ .+.||
T Consensus 325 lf~i~R~~Gw~AH~~Eq~~~~-~iiRP 350 (356)
T cd06110 325 IFAISRVSGWCAHILEQYFNN-RLIRP 350 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHcC-CccCC
Confidence 999999999999999998643 24444
No 35
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=100.00 E-value=1.7e-55 Score=447.25 Aligned_cols=333 Identities=25% Similarity=0.298 Sum_probs=238.7
Q ss_pred eeEEEEecC-CccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHH-HHHHHc-CCCCCCEEEEecCCcccccccccc
Q 014132 16 IYEGIAIGG-DVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL-VEALKQ-GKVNKPVVAWVSGTCARLFKSEVQ 92 (430)
Q Consensus 16 ~S~~i~~Gg-d~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~-a~~~~~-~~~~KPvv~~~~G~~~~~~p~g~~ 92 (430)
+|..=+-+| -.|+|.++.|+.+ ..+-+++-..+++||-|..+|.+. .+-+++ +..+..|+
T Consensus 12 Is~id~~~G~L~YRGy~i~dL~~-~~sfeeva~LL~~g~lP~~~el~~f~~~l~~~~~lpe~v~---------------- 74 (356)
T PF00285_consen 12 ISFIDGEKGILRYRGYDIEDLAE-NASFEEVAYLLWYGELPTAEELEEFSAELKERRALPEEVI---------------- 74 (356)
T ss_dssp SEEEETTTTEEEETTEEHHHHHH-HSBHHHHHHHHHHSS--BHHHHHHHHHHHHCTTS--HHHH----------------
T ss_pred CeEEeCCCCEEEEcCeEHHHHHh-cCCHHHHHHHHHhccCCChhhhccchhHHHhhcchhHHHH----------------
Confidence 344444444 5789999999999 777778888899999998766443 222221 11111122
Q ss_pred cccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCC-CCCCCCCCchhhHHHHHhcchhh
Q 014132 93 FGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPV-KEVTPPQIPEDLNTAIKSGKVRA 171 (430)
Q Consensus 93 ~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~-~e~~~~~~~~~~~~~~l~ak~p~ 171 (430)
+++.. .+.-.+|-+++..+-..+.. ++|. ..+..+ ....+++++++|++|+
T Consensus 75 -------------------~~i~~--lp~~~~pm~~L~~~vs~l~~------~~~~~~~~~~~-~~~~~~~~~liA~~p~ 126 (356)
T PF00285_consen 75 -------------------EVIEA--LPRDAHPMDVLRAAVSALSA------FDPDPLYDNSP-EDVLEDAIRLIAKIPT 126 (356)
T ss_dssp -------------------HHHHC--STTTS-HHHHHHHHHHHHHH------HSTTGTCTTSH-HHHHHHHHHHHHHHHH
T ss_pred -------------------HHHhh--cCCCCCchHHHHHHHhhhhh------hhhccccccch-hHHHHHHHHHhhcchH
Confidence 12221 22222233333333333322 1111 111121 2335788999999999
Q ss_pred HHHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhh--hCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhh
Q 014132 172 PTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLW--FKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTA 249 (430)
Q Consensus 172 i~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~--~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~a 249 (430)
|++++|+ +..|+++..+..+++ |++.++.++ +|++|++.++++||++|||++|||+|+|| |++|+++
T Consensus 127 i~a~~~~--~~~g~~~~~p~~~~~--------~~~n~l~~l~~~g~~p~~~~~~~l~~~lvl~aDH~~~~St-~aaR~~a 195 (356)
T PF00285_consen 127 IVAAIYR--HRRGQPPIPPDPDLS--------YAENFLYMLGVTGREPDPEEARALDAALVLHADHGLNPST-FAARVAA 195 (356)
T ss_dssp HHHHHHH--HHTTS------TTSS--------HHHHHHHHHH-HSSB--HHHHHHHHHHHHHHS--SSSHHH-HHHHHHH
T ss_pred HHHHHHH--HhCCCCccccccchH--------HHHHHHHHhhccccCCChHHHHHHHHHHHhhcCCCCCccc-hhhhhhh
Confidence 9999999 568888888877754 555555565 68888999999999999999999999999 9999999
Q ss_pred ccCCChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCcHHHHHHHHH
Q 014132 250 RAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKF 328 (430)
Q Consensus 250 St~a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~~DPRa~~L~~~ 328 (430)
||++|+|+|++||++++ ||+||||+++|++||+++.+. ++++++|++.++++++|||||||+|+ +.|||++.|+++
T Consensus 196 St~~~~~~av~agl~al~G~~hgga~~~~~~~l~~i~~~-~~~~~~v~~~l~~~~~i~GfGH~vy~--~~DPRa~~l~~~ 272 (356)
T PF00285_consen 196 STGADLYSAVAAGLAALSGPLHGGANEAAMRMLQEIGSP-ENVEEYVEERLAKGERIPGFGHRVYK--NGDPRAEALLAL 272 (356)
T ss_dssp TTT--HHHHHHHHHHHHCSTTTTTHHHHHHHHHHHHSSG-GGHHHHHHHHHHTTSTTTTBCESSSS--S--HHHHHHHHH
T ss_pred ccCcchhHHHHhhhhhccCcccccccHHHHHHHHHHHhh-HHHHHHHHHHHhccccccccCCCcCC--CCCCChHHHHHH
Confidence 99999999999999998 999999999999999999776 69999999999999999999999998 479999999999
Q ss_pred HHHhC---CCChHHHHHHHHHHHHhh--ccCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcchhhhhhhhhh
Q 014132 329 ARTHF---PSVKYMEYAVQVETYTLS--KANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIG 403 (430)
Q Consensus 329 ~~~~~---~~~~~~~~a~~~e~~~~~--~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R~~G 403 (430)
++++. ..++++++++++|+++.+ ..++++||||||+|+++++||+|.++||+ +|++||++|
T Consensus 273 ~~~~~~~~~~~~~~~~~~~ie~~~~~~~~~~~l~pNvd~~~a~l~~~lG~p~~~~~~--------------if~~~R~~G 338 (356)
T PF00285_consen 273 ARELGEEFPDGPLVELAEAIEEAAPEDFKERKLYPNVDFYSAALLRALGFPPELFTA--------------IFALSRTAG 338 (356)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTESB-THHHHHHHHHHTT--GGGHHH--------------HHHHHHHHH
T ss_pred HHHhhhccCCCHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHhcchhhchH--------------HHHHHHHHH
Confidence 99998 889999999999999876 25689999999999999999998887776 999999999
Q ss_pred hhhhHHHhhhhcCCCCCC
Q 014132 404 LIGHTFDQKRLKQPLYRH 421 (430)
Q Consensus 404 wiAH~~Eq~~~~~P~~r~ 421 (430)
|+|||+||++...++.||
T Consensus 339 w~AH~~Eq~~~~~~i~RP 356 (356)
T PF00285_consen 339 WIAHILEQRQLNNKIIRP 356 (356)
T ss_dssp HHHHHHHHHHCT------
T ss_pred HHHHHHHHHhcCCCCCCc
Confidence 999999999856688875
No 36
>PRK06224 citrate synthase; Provisional
Probab=100.00 E-value=5.5e-55 Score=426.38 Aligned_cols=238 Identities=28% Similarity=0.384 Sum_probs=214.4
Q ss_pred HHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhccCC
Q 014132 174 HIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGK 253 (430)
Q Consensus 174 a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aSt~a 253 (430)
.|.|+|++..+++++|||+|+.+|+++. ||++++++|++|+.|++++.++|+++||+++|||+|+|| |++|+++||++
T Consensus 8 ~~~T~i~~~~~~~l~yrG~~~~dL~~~~-sf~e~~~lll~G~lP~~~e~r~f~a~Lv~~adHg~~~St-~aar~~ast~~ 85 (263)
T PRK06224 8 WWRTSISDVTPEEIYVRGYDLEDLIGKL-SFTDMIFLLLRGRLPTPNEARLLDAVLVALVDHGLTPSA-AAARMTASGGE 85 (263)
T ss_pred CCceeeeeecCCeeEECCccHHHHhhcC-CHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhccCCCcHH-HHHHHHHhcCc
Confidence 4668888888888999999999999876 999999999999999999999999999999999999998 99999999999
Q ss_pred ChHHHHHHhhhccCCCccCchHHHHHHHHHHhcc-------CCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCcHHHHHHH
Q 014132 254 DLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDR-------GLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQ 326 (430)
Q Consensus 254 ~~~~av~Agl~a~Gp~hGGa~~~a~~~l~~~~~~-------~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~~DPRa~~L~ 326 (430)
|+++|++||++++||+||||+++|++||+++... +++++++|++.++++++|||||||+|+ ++|||++.|+
T Consensus 86 ~l~~av~agl~a~G~~hgGa~~~a~~~l~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~~y~--~~DPRa~~L~ 163 (263)
T PRK06224 86 SLQGAVAAGLLALGSVHGGAGEQAAELLQEIAAAADAGADLDAAARAIVAEYRAAGKRVPGFGHPLHK--PVDPRAPRLL 163 (263)
T ss_pred cHHHHHHHHHhhcccccCChhHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHcCCCcCCCCCCCCC--CCCchHHHHH
Confidence 9999999999999999999999999999999732 235778999999999999999999997 4799999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhh-ccCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcchhhhhhhhhhhh
Q 014132 327 KFARTHFPSVKYMEYAVQVETYTLS-KANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLI 405 (430)
Q Consensus 327 ~~~~~~~~~~~~~~~a~~~e~~~~~-~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R~~Gwi 405 (430)
+++++++..++++++++++++++.+ ..|+++||||||+|+++++||||.++|++ +|+++|++||+
T Consensus 164 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~Nvd~~~a~l~~~lG~p~~~~~~--------------lf~~~R~~G~~ 229 (263)
T PRK06224 164 ALAREAGVAGRHCRLAEALEAALAAAKGKPLPLNVDGAIAAILADLGFPPALARG--------------LFVISRAAGLV 229 (263)
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHcCCChHHHhH--------------HHHHHHHHHHH
Confidence 9999998888999999999998865 34679999999999999999998888876 99999999999
Q ss_pred hhHHHhhhhcCC--CCCCCCcCcccC
Q 014132 406 GHTFDQKRLKQP--LYRHPWEDVLYT 429 (430)
Q Consensus 406 AH~~Eq~~~~~P--~~r~~~~~~~Y~ 429 (430)
||++||++.+.. +.++.|+.+.|+
T Consensus 230 AH~~Eq~~~~~~~r~~~~~~~~~~Y~ 255 (263)
T PRK06224 230 AHVWEELQQPIGFRIWDPAEEAVEYT 255 (263)
T ss_pred HHHHHHHhCCCCcCCCCChhhcceec
Confidence 999999965532 234478888886
No 37
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00 E-value=7.4e-55 Score=427.08 Aligned_cols=222 Identities=26% Similarity=0.324 Sum_probs=201.8
Q ss_pred HhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCC-------------------------------chhHHHHH
Q 014132 177 STISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSL-------------------------------PRYCTQFI 225 (430)
Q Consensus 177 ~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~-------------------------------~~~~~~~l 225 (430)
|.|+....+++.|||+|+.+|+++. +|+++.+++|.++.| ++.++++|
T Consensus 23 t~It~i~~~~~~yRG~da~~L~~~~-~~e~va~LLw~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (282)
T cd06102 23 SAITLITEGRLFYRGRDAVELAETA-TLEEVAALLWDGDEAARLLRLLAAALLGAAPSDAPVHRRLARAWGLDPAAADLL 101 (282)
T ss_pred eeeEEEeCCeeEEcCccHHHHHhcC-CHHHHHHHHHcCCchHHHHHHHHHHhccCCCCcccHHHHHHHHhcCCHHHHHHH
Confidence 4444445566999999999999988 899999999988877 77889999
Q ss_pred HHHHHHhccCCCCCcchhHHHHhhccCCChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcCCC
Q 014132 226 EICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIR 304 (430)
Q Consensus 226 ~~~lvl~aDHg~~~St~~aar~~aSt~a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ 304 (430)
|++|||+||||+|+|| |++|+++||++|+|+||+||++++ ||+||||++.|++||+++.+. ++++++|++++++|++
T Consensus 102 ~~~LVL~ADHgln~St-~aaRv~AStgadl~~avaagl~al~Gp~HGGA~~~a~~~l~e~~~~-~~~~~~v~~~l~~g~~ 179 (282)
T cd06102 102 RRALVLLADHELNAST-FAARVAASTGASLYAAVLAGLAALSGPRHGGATARVEALLDEALRA-GDAEAAVRERLRRGEA 179 (282)
T ss_pred HHHHHHHhccCCCcHH-HHHHHHhccCCcHHHHHHHHHHhCCCCCccCHHHHHHHHHHHhcCC-ccHHHHHHHHHHcCCc
Confidence 9999999999999999 899999999999999999999998 999999999999999999876 5899999999999999
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhccCCCCCchhhhH
Q 014132 305 VPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEID 384 (430)
Q Consensus 305 ipGFGH~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~ 384 (430)
|||||||+|+ +.|||++.|+++++++.. +++++++++++++.+ .++++||||||+++++++||||.++|++
T Consensus 180 ipGFGH~vy~--~~DPRa~~L~~~~~~~~~--~~~~~a~~ve~~~~~-~~gl~pNvD~a~a~l~~~lG~p~~~~~~---- 250 (282)
T cd06102 180 LPGFGHPLYP--DGDPRAAALLAALRPLGP--AAPPAARALIEAARA-LTGARPNIDFALAALTRALGLPAGAAFA---- 250 (282)
T ss_pred ccCCCCCCCC--CCCccHHHHHHHHHHHhh--HHHHHHHHHHHHHHH-HHCCCCChHHHHHHHHHHcCCChhhcch----
Confidence 9999999997 469999999999999876 999999999998865 5789999999999999999998888876
Q ss_pred HHHhhhhcchhhhhhhhhhhhhhHHHhhhhcCCCCCC
Q 014132 385 EIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRH 421 (430)
Q Consensus 385 ~~~p~~~~~~lf~~~R~~GwiAH~~Eq~~~~~P~~r~ 421 (430)
+|+++|++||+||++||++.+ .+.||
T Consensus 251 ----------lF~~~R~~GwiAH~~Eq~~~~-~liRP 276 (282)
T cd06102 251 ----------LFALGRSAGWIAHALEQRAQG-KLIRP 276 (282)
T ss_pred ----------HHHHHHHHHHHHHHHHHHhcC-CCcCC
Confidence 999999999999999999653 34444
No 38
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) from citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. Some CS proteins function as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. CCL cleaves citryl-CoA (CiCoA) to AcCoA and OAA. ACLs catalyze an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA; they do this in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. The overall CS reaction is thought to proceed through three partial reactions and i
Probab=100.00 E-value=2e-53 Score=403.39 Aligned_cols=203 Identities=21% Similarity=0.312 Sum_probs=182.8
Q ss_pred CHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhccCCChHHHHHHhhhcc-CCCccCchHHHHHHH
Q 014132 203 GVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYF 281 (430)
Q Consensus 203 s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aSt~a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l 281 (430)
||.+++++|++|+.|+++++++||++||+++|||+|+|| |++|+++||++|+|+|++||++++ ||+||||++.+++||
T Consensus 1 ~~~~~fl~ml~g~~p~~~~~~~l~~~lvl~aDHg~~~St-~aar~~aSt~ad~~~av~Agl~al~Gp~hGGa~~~a~~~l 79 (213)
T cd06099 1 SYAENFLYMLGGEEPDPEFARAMDLALILHADHEGNAST-FTARVVGSTGSDPYSAIAAAIGALKGPLHGGANEAVLKML 79 (213)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCchhh-HHHHHHhccCCCHHHHHHHHHHHcCCCCcCCHHHHHHHHH
Confidence 356666666688889999999999999999999999998 999999999999999999999999 999999999999999
Q ss_pred HHHhccC-CCHHHHHHHHHHcCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhhc--cCC
Q 014132 282 KDAYDRG-LSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPS---VKYMEYAVQVETYTLSK--ANN 355 (430)
Q Consensus 282 ~~~~~~~-~~~~~~v~~~~~~~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~~~---~~~~~~a~~~e~~~~~~--~~~ 355 (430)
+++.+.. ++++++|++.++++++|||||||+|+ ++|||++.|+++++++... ++++++++++|+++.+. .|+
T Consensus 80 ~e~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~--~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~le~~~~~~~~~r~ 157 (213)
T cd06099 80 EEIGTPKNEPAEAYIRKKLESKRVIMGFGHRVYK--KYDPRATVLKKFAEELLKEDGDDPMFELAAELEKIAEEVLYEKK 157 (213)
T ss_pred HHhCCcccccHHHHHHHHHhCCCcccCCCCCCCC--CCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhccC
Confidence 9998652 47899999999999999999999997 4799999999999998644 49999999999988653 479
Q ss_pred cccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcchhhhhhhhhhhhhhHHHhhhhcCCCCCCC
Q 014132 356 LVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP 422 (430)
Q Consensus 356 l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R~~GwiAH~~Eq~~~~~P~~r~~ 422 (430)
++||||||+|+++++||||.++||+ +|+++|++||+||++||++.+.++.||.
T Consensus 158 l~~Nvd~~~a~l~~~lG~p~~~~~~--------------lf~~~R~~Gw~AH~~Eq~~~~~~l~RP~ 210 (213)
T cd06099 158 LYPNVDFYSGVLYKAMGFPTELFTP--------------LFAVARAVGWLAHLIEQLEDNFKIIRPR 210 (213)
T ss_pred CCCChHHHHHHHHHHcCcCHHhhhH--------------HHHHHHHHHHHHHHHHHHhCCCCccCCc
Confidence 9999999999999999999888887 9999999999999999997764666663
No 39
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ACL catalyzes an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. In fungi, yeast, plants, and animals ACL is cytosolic and generates AcCoA for lipogenesis. ACL may be required for fruiting body maturation in the filamentous fungus Sordaria macrospore. In several groups of autotrophic prokaryotes and archaea, ACL carries out the citrate-cleavage reaction of the reductive tricarboxylic acid (rTCA) cycle. In the family Aquificaceae this latter reaction in the rTCA cycle is carried out via a two enzyme system the second enzyme of which is CCL; the first enzyme is citryl-CoA synthetase (CC
Probab=100.00 E-value=3.8e-53 Score=405.39 Aligned_cols=220 Identities=45% Similarity=0.708 Sum_probs=204.0
Q ss_pred CCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCC-CCcchhHHHHhhccC-CChHHHHHHhhhccCC
Q 014132 191 GVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGP-CVSGAHNTIVTARAG-KDLVSSLVSGLLTIGP 268 (430)
Q Consensus 191 g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~-~~St~~aar~~aSt~-a~~~~av~Agl~a~Gp 268 (430)
|||+.+|+++. ||++++++|++|+.|++++.++|+.+|++++|||+ |+|| |++|+++||+ +|+|+|++||++++||
T Consensus 1 G~~~~dL~~~~-sf~e~~~lml~G~~P~~~e~~~f~~~Lvl~adhg~~~~St-~aar~~astg~~~~~~~vaag~~a~G~ 78 (227)
T cd06100 1 GYDLSDLIGKI-SFGDVLYLLLKGRLPTPYEARLLEALLVALADHGPATPSA-HAARLTASAGPEDLQSAVAAGLLGIGD 78 (227)
T ss_pred CCCHHHHHhCC-CHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccCCCCCchH-HHHHHHHHcCCccHHHHHHHHHhccCC
Confidence 68888888876 99999999999999999999999999999999999 9999 9999999999 9999999999999999
Q ss_pred CccCchHHHHHHHHHHhccC----CCHHHHHHHHHHcCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCCChHHHHHHH
Q 014132 269 RFGGAIDDAARYFKDAYDRG----LSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQ 344 (430)
Q Consensus 269 ~hGGa~~~a~~~l~~~~~~~----~~~~~~v~~~~~~~~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ 344 (430)
+|||+++.+++|++++.+.. ++++++|++.++++++|||||||+|+ ++|||++.|+++++++...+++++++.+
T Consensus 79 ~hgga~e~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~--~~DPRa~~L~~~~~~~~~~~~~~~~~~~ 156 (227)
T cd06100 79 RFGGAGEGAARLFKEAVDSGDALDAAAAEFVAEYRAAKKRIPGFGHPVHK--NPDPRVPRLLELARELGPAGPHLDYALA 156 (227)
T ss_pred cccChHHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCCCCCCCCCCC--CCCchHHHHHHHHHHhccCCHHHHHHHH
Confidence 99999999999999998652 48999999999999999999999997 4799999999999999888899999999
Q ss_pred HHHHHhhc-cCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcchhhhhhhhhhhhhhHHHhhhhcCCCCCCCC
Q 014132 345 VETYTLSK-ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPW 423 (430)
Q Consensus 345 ~e~~~~~~-~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R~~GwiAH~~Eq~~~~~P~~r~~~ 423 (430)
+++++.+. .++++||||||+|+++++||||.++|++ +|+++|++||+||++||++.+.++.|..|
T Consensus 157 ~~~~~~~~~~~~l~~Nvd~~~a~~~~~lG~p~~~~~~--------------lf~~~R~~G~~AH~~Eq~~~~~~~~~~~~ 222 (227)
T cd06100 157 VEKALTAAKGKPLPLNVDGAIAAILLDLGFPPGALRG--------------LFVLGRSPGLIAHALEEKRLGQPLYRHPW 222 (227)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHhCCCHHHHHH--------------HHHHHHHHHHHHHHHHHHhccCCCCCCch
Confidence 99988653 3569999999999999999988777766 99999999999999999987778888899
Q ss_pred cCccc
Q 014132 424 EDVLY 428 (430)
Q Consensus 424 ~~~~Y 428 (430)
++|+|
T Consensus 223 ~~i~y 227 (227)
T cd06100 223 DDIEY 227 (227)
T ss_pred hhccC
Confidence 99998
No 40
>KOG2617 consensus Citrate synthase [Energy production and conversion]
Probab=100.00 E-value=2e-44 Score=357.05 Aligned_cols=332 Identities=17% Similarity=0.180 Sum_probs=264.7
Q ss_pred CccCCCCHHHHHHHhhc-----CCCccEE---EEeeccCChhHHHH--HHHHHcCCCCCCEEEEecCCccccccccc-cc
Q 014132 25 DVFPGSTLSDHILRFNN-----IPQVKMM---VVLGELGGRDEYSL--VEALKQGKVNKPVVAWVSGTCARLFKSEV-QF 93 (430)
Q Consensus 25 d~i~g~~~~d~l~~l~~-----Dp~T~~I---vl~gE~~~~~E~~~--a~~~~~~~~~KPvv~~~~G~~~~~~p~g~-~~ 93 (430)
..++|.++.||-..+.. +|-.+.+ +++|+.|...+... .+|.+.++.++-|+-.+-.. |... .|
T Consensus 83 I~frg~~i~e~q~~lp~~~~~~e~lpe~~~wLL~tG~vPt~~Q~~~~~~~~a~rs~vP~~v~~~idsm-----P~d~HPM 157 (458)
T KOG2617|consen 83 IRFRGGDIPECQKRLPPAEEGAEPLPEELFWLLLTGNVPTQSQVAALSFELAQRSAVPQGVLDMIDSM-----PKDLHPM 157 (458)
T ss_pred eeecCCCHHHHHhhCCCCccCCcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccHHHHHHHHhC-----CcccchH
Confidence 57889999999988765 5555555 88999999887655 45555445566677776554 3343 24
Q ss_pred ccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhHHHHHhcchhhHH
Q 014132 94 GHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPT 173 (430)
Q Consensus 94 gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~l~ak~p~i~ 173 (430)
+...+-+++ -..+++++--...|+.+. -+|++.. +++++|+||+|+|+
T Consensus 158 ~q~~~a~~a--l~~~s~fa~ay~~G~~k~--------------------~yw~~~~----------ed~l~Liak~p~iA 205 (458)
T KOG2617|consen 158 AQLAAAVLA--LKIFSPFAKAYLRGIGKY--------------------KYWQYTY----------EDCLVLIAKLPTIA 205 (458)
T ss_pred HHHHHHHHh--ccccccchhhhhhccchh--------------------hcccccH----------HHHHHHHHhccHHH
Confidence 443322211 233445555666665544 6777774 49999999999999
Q ss_pred HHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhccCC
Q 014132 174 HIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGK 253 (430)
Q Consensus 174 a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aSt~a 253 (430)
+.+|+- ..++.+..+..+++| .+||.+|+-+ ..+..++++|.++++|+|||.+++++++..+++|+.
T Consensus 206 a~iY~~--~~~dg~~~~~~~~dy-------s~Nf~~mlg~---~~~~f~~lmrly~~iHadHE~gnVsAh~~HLvGSal- 272 (458)
T KOG2617|consen 206 AAIYRN--IYADGIPKPDPNLDY-------SANFARMLGS---RQPDFAQLMRLYVGIHADHEGGNVSAHTGHLVGSAL- 272 (458)
T ss_pred HHHHHH--HhcCCCCCCCcccch-------hHhHHHHHcc---CChHHHHHHHHeeeeecccccCcHHHHhcccccccc-
Confidence 999994 334444445666666 5667766633 247899999999999999999888889999999999
Q ss_pred ChHHHHHHhhhcc-CCCccCchHHHHHHHH----HHhcc--CCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCcHHHHHHH
Q 014132 254 DLVSSLVSGLLTI-GPRFGGAIDDAARYFK----DAYDR--GLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQ 326 (430)
Q Consensus 254 ~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~----~~~~~--~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~~DPRa~~L~ 326 (430)
|||.+++||++++ ||+||+|++++++||. +|.+. .+++.+|+...+.+++.||||||+|++ ++|||...++
T Consensus 273 dpyls~aa~~~GLaGPLHGlAnqEvl~~L~~~~~Eig~~~s~e~ikeyiw~~ln~~rvvpGyGHavlr--~tDPR~~~~~ 350 (458)
T KOG2617|consen 273 DPYLSFAAGMNGLAGPLHGLANQEVLRFLGKLIEEIGKDLSKENIKEYIWKTLNSGRVVPGYGHAVLR--KTDPRYKVQR 350 (458)
T ss_pred chhHHHHHhhcccccccccCchHHHHHHHHHhHHHhccccchhhhhHhhHHhhccccccccccccccc--CCCchhhHHH
Confidence 9999999999998 9999999999999998 66532 368999999999999999999999998 5899999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHh----h--ccCCcccchhhHHHHHHHHhccCCCCC-chhhhHHHHhhhhcchhhhhh
Q 014132 327 KFARTHFPSVKYMEYAVQVETYTL----S--KANNLVLNVDGAIGSLFLDLLAGSGMF-SKQEIDEIVEIGYLNGLFVLA 399 (430)
Q Consensus 327 ~~~~~~~~~~~~~~~a~~~e~~~~----~--~~~~l~~Nvd~~~a~l~~~lG~~~~~f-t~~e~~~~~p~~~~~~lf~~~ 399 (430)
+++.++.+++|.+++...+++++. + +.++++||||+++|+++..+|++...| |. +|.++
T Consensus 351 efA~k~~~~d~l~~l~~~l~~~~p~vl~e~gk~knp~PNVD~~SGvll~~yGl~e~~fyTV--------------LFgVs 416 (458)
T KOG2617|consen 351 EFALKHLPDDPLFLLVSALYKIAPGVLTEHGKVKNPYPNVDAHSGVLLQYYGLPELFFYTV--------------LFGVS 416 (458)
T ss_pred HHHHhcCCCCcchhhhHHHHHhChHHHHHhcccCCCCCcHHHHHHHHHHhcCCcHHHHHHH--------------HHHHh
Confidence 999999999999999999998862 1 579999999999999999999865544 65 99999
Q ss_pred hhhhhhhhHHHhhhhcCCCCCCC
Q 014132 400 RSIGLIGHTFDQKRLKQPLYRHP 422 (430)
Q Consensus 400 R~~GwiAH~~Eq~~~~~P~~r~~ 422 (430)
|++|.++|.+|.|.+..||.|+.
T Consensus 417 Ra~Gvlsqliw~ralg~pieRPk 439 (458)
T KOG2617|consen 417 RALGVLSQLIWDRALGLPIERPK 439 (458)
T ss_pred hhHHHHHHHHHHHHhCCcccCcc
Confidence 99999999999999999999983
No 41
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.6e-33 Score=270.87 Aligned_cols=136 Identities=30% Similarity=0.485 Sum_probs=130.6
Q ss_pred ChHHHHHHHHhcCCCeeEEEEecCCccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHHHHHHHcCCCCCCEEEEec
Q 014132 1 MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVS 80 (430)
Q Consensus 1 ~~~ei~~~~~~~g~G~S~~i~~Ggd~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~a~~~~~~~~~KPvv~~~~ 80 (430)
||||+.+++++.|+|||++||+|||+|+|++|.|+|+.|++||+||+|+|+||+|++.|+++++|+++...+||||+|++
T Consensus 157 LTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGEiGG~aEe~AA~~i~~~~~~KPVVa~ia 236 (293)
T COG0074 157 LTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEIGGPAEEEAAEYIKANATRKPVVAYIA 236 (293)
T ss_pred hHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEecCCCcHHHHHHHHHHHhccCCCEEEEEe
Confidence 79999999999999999999999999999999999999999999999999999999999999999997334499999999
Q ss_pred CCcccccccccccccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHH
Q 014132 81 GTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKL 139 (430)
Q Consensus 81 G~~~~~~p~g~~~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~ 139 (430)
|+++ |+|++|||+||++++.++++++|.++|+++|+.++++|.++++++.+++.++
T Consensus 237 G~ta---p~gkrmGhaGaiv~~~~gta~~Ki~al~~aGv~v~etp~~l~~~l~~vl~~~ 292 (293)
T COG0074 237 GRTA---PEGKRMGHAGAIVSGGKGTAESKIAALEAAGVKVAETPAELGELLLEVLKGR 292 (293)
T ss_pred ccCC---CccchhhhhhhhhcCCCccHHHHHHHHHHcCCeecCCHHHHHHHHHHHhhcc
Confidence 9999 6999999999999999999999999999999999999999999999999863
No 42
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=99.97 E-value=2.5e-31 Score=264.00 Aligned_cols=136 Identities=31% Similarity=0.464 Sum_probs=130.3
Q ss_pred ChHHHHHHHHhcCCCeeEEEEecCCccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHHHHHHHcCCCCCCEEEEec
Q 014132 1 MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVS 80 (430)
Q Consensus 1 ~~~ei~~~~~~~g~G~S~~i~~Ggd~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~a~~~~~~~~~KPvv~~~~ 80 (430)
|++|+++++.++|+|+|++||+|||++.|++|.|+|++|.+||+|++|+||+|++|+.|+++++|+++...+||||+|++
T Consensus 181 l~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi~~~~~~KPVVa~~a 260 (317)
T PTZ00187 181 LTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKNNPIKKPVVSFIA 260 (317)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeCCCCCCCCCHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHHHhhcCCCcEEEEEe
Confidence 58999999999999999999999999999999999999999999999999999999999999999996446899999999
Q ss_pred CCcccccccccccccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHH
Q 014132 81 GTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKL 139 (430)
Q Consensus 81 G~~~~~~p~g~~~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~ 139 (430)
|+++ |.|++|||||||++++.|++++|.++|+++|++++++++||+++++++|+++
T Consensus 261 Grsa---p~G~r~gHaGAi~~~~~G~~~~k~aal~qaGv~v~~~~~el~~~~~~~~~~~ 316 (317)
T PTZ00187 261 GITA---PPGRRMGHAGAIISGGKGTAPGKIEALEAAGVRVVKSPAQLGKTMLEVMKKK 316 (317)
T ss_pred cCCC---CCCCcccchhhhhccCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHhc
Confidence 9999 5899999999999999999999999999999999999999999999999874
No 43
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=99.97 E-value=4.1e-31 Score=247.41 Aligned_cols=136 Identities=37% Similarity=0.539 Sum_probs=129.8
Q ss_pred ChHHHHHHHHhcCCCeeEEEEecCCccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHHHHHHHc---CCCCCCEEE
Q 014132 1 MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQ---GKVNKPVVA 77 (430)
Q Consensus 1 ~~~ei~~~~~~~g~G~S~~i~~Ggd~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~a~~~~~---~~~~KPvv~ 77 (430)
||||..++-.+.|+|+|.|||+|||+++|++|.|||+.|.+||+||+|+|+||+||+.||++++|+++ +...||||.
T Consensus 188 LTYEaVhQTT~vglGQslcvGiGGDpFnGT~FID~L~vFl~D~~t~GIiliGEIGG~AEe~AA~flk~~nSg~~~kPVvs 267 (329)
T KOG1255|consen 188 LTYEAVHQTTQVGLGQSLCVGIGGDPFNGTNFIDCLEVFLEDPETEGIILIGEIGGSAEEEAAEFLKEYNSGSTAKPVVS 267 (329)
T ss_pred eeehhhhhhccccccceeEEeecCCCCCCccHHHHHHHHhcCcccceEEEEeccCChhhHHHHHHHHHhccCCCCCceeE
Confidence 68999999999999999999999999999999999999999999999999999999999999999994 235799999
Q ss_pred EecCCcccccccccccccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHH
Q 014132 78 WVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKL 139 (430)
Q Consensus 78 ~~~G~~~~~~p~g~~~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~ 139 (430)
|++|.++ |+|++|||+|||+++++|+++.|.++|+++||.|.++|..|+..+.+.+.++
T Consensus 268 FIAG~tA---ppGrRMGHaGAIisGgkg~A~dKi~aL~~agV~vt~sPa~lG~~~~~~~~~~ 326 (329)
T KOG1255|consen 268 FIAGVTA---PPGRRMGHAGAIISGGKGTAKDKIAALRDAGVVVTESPAKLGSAMLEEFLKL 326 (329)
T ss_pred EeecccC---CCcccccccceeeeCCCccHHHHHHHHHhcCeEEEcCHHHHHHHHHHHHHhc
Confidence 9999999 6999999999999999999999999999999999999999999998888875
No 44
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=99.94 E-value=1.6e-26 Score=228.91 Aligned_cols=135 Identities=33% Similarity=0.502 Sum_probs=125.7
Q ss_pred ChHHHHHHHHhcCCCeeEEEEecCCccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHHHHHHHcCCCCCCEEEEec
Q 014132 1 MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVS 80 (430)
Q Consensus 1 ~~~ei~~~~~~~g~G~S~~i~~Ggd~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~a~~~~~~~~~KPvv~~~~ 80 (430)
|+++++.++.++|+|+|++||+||+++.|+++.|+|+||.+||+||+|++|+|.+|..+.++++|+++.+.+||||++|+
T Consensus 162 l~~~l~~~~~~~giG~S~~VS~Gn~~~adv~~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~aa~~~KPVV~lk~ 241 (300)
T PLN00125 162 LTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGTEKPVVAFIA 241 (300)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHHHhcCCCCEEEEEe
Confidence 46789999999999999999999997779999999999999999999999999999998899999986556899999999
Q ss_pred CCcccccccccccccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHH
Q 014132 81 GTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEK 138 (430)
Q Consensus 81 G~~~~~~p~g~~~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~ 138 (430)
|+++ |.|+++||||++++++.|+++.+.++|+|+|++++++++||+++++++|++
T Consensus 242 Grs~---~~g~~~sHTGala~~~~G~~~~~~a~~rq~Gvi~v~~~~el~~~~~~~~~~ 296 (300)
T PLN00125 242 GLTA---PPGRRMGHAGAIVSGGKGTAQDKIKALREAGVTVVESPAKIGVAMLEVFKE 296 (300)
T ss_pred cCCC---CCCCCccchhhhhcCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHh
Confidence 9998 478899999999766668999999999999999999999999999999986
No 45
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=99.92 E-value=8.5e-25 Score=216.20 Aligned_cols=135 Identities=30% Similarity=0.501 Sum_probs=124.2
Q ss_pred ChHHHHHHHHhcCCCeeEEEEecCCccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHHHHHHHcCCCCCCEEEEec
Q 014132 1 MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVS 80 (430)
Q Consensus 1 ~~~ei~~~~~~~g~G~S~~i~~Ggd~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~a~~~~~~~~~KPvv~~~~ 80 (430)
|+++++.++.++|+|+|++||+||++..|+++.|+|+||.+||+|++|++|.|..+..+.++++|+++. .+||||++|+
T Consensus 157 l~~~~~~~~~~~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~a~~~~~~~-~~KPVV~lk~ 235 (291)
T PRK05678 157 LTYEAVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLEAFEEDPETEAIVMIGEIGGSAEEEAAEYIKAN-VTKPVVGYIA 235 (291)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCcHHHHHHHHHHHc-CCCCEEEEEe
Confidence 357889999999999999999999976689999999999999999999999999888877888898742 5899999999
Q ss_pred CCcccccccccccccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHH
Q 014132 81 GTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKL 139 (430)
Q Consensus 81 G~~~~~~p~g~~~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~ 139 (430)
|+++ |.|+++||||++++++.|+++.+.++|+|+|++++++++||.++++++|++|
T Consensus 236 Grs~---~~g~~~sHTGala~~~~g~~~~~~a~~~q~Gvi~v~~~~el~~~~~~~~~~~ 291 (291)
T PRK05678 236 GVTA---PPGKRMGHAGAIISGGKGTAEEKKEALEAAGVKVARTPSEIGELLKEVLKGL 291 (291)
T ss_pred cCCC---CCCCcccchhhhccCCCCCHHHHHHHHHHCCCeECCCHHHHHHHHHHHHccC
Confidence 9999 4788899999999888899999999999999999999999999999999864
No 46
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=99.92 E-value=8.6e-25 Score=215.65 Aligned_cols=132 Identities=30% Similarity=0.495 Sum_probs=121.3
Q ss_pred ChHHHHHHHHhcCCCeeEEEEecCCccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHHHHHHHcCCCCCCEEEEec
Q 014132 1 MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVS 80 (430)
Q Consensus 1 ~~~ei~~~~~~~g~G~S~~i~~Ggd~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~a~~~~~~~~~KPvv~~~~ 80 (430)
|+++++.++.++|+|+|++||+||+.+.|+++.|+|+||.+||+|++|++|.|..+..+.++++++++ ..+||||++|+
T Consensus 155 l~~~~~~~a~~~giG~S~~Vs~Gn~a~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~~~~~~~~-~~~KPVV~lk~ 233 (286)
T TIGR01019 155 LTYEAVHQLTKAGFGQSTCVGIGGDPVNGTSFIDVLEAFEKDPETEAIVMIGEIGGSAEEEAADFIKQ-NMSKPVVGFIA 233 (286)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCchHHHHHHHHHh-cCCCCEEEEEe
Confidence 46788999999999999999999998668999999999999999999999999998888788899874 26899999999
Q ss_pred CCcccccccccccccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHH
Q 014132 81 GTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETF 136 (430)
Q Consensus 81 G~~~~~~p~g~~~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~ 136 (430)
|+++ |.|+++||||+++++..|+++.+.++|+|+|+.++++++||.+++++++
T Consensus 234 Grs~---~~g~~~sHTGala~~~~g~~~~~~aa~rqaGvi~v~~~~el~d~l~~~~ 286 (286)
T TIGR01019 234 GATA---PPGKRMGHAGAIISGGKGTAESKIEALEAAGVTVVKSPSDIGELLAEIL 286 (286)
T ss_pred cCCC---CccccccchhhhhcCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHhC
Confidence 9997 3688899999999877789999999999999999999999999999874
No 47
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=99.90 E-value=9.8e-24 Score=187.32 Aligned_cols=118 Identities=19% Similarity=0.259 Sum_probs=78.3
Q ss_pred hHHHHHHHHhcCCCeeEEEEecCCccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHHHHHHH---cCCCCCCEEEE
Q 014132 2 SNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALK---QGKVNKPVVAW 78 (430)
Q Consensus 2 ~~ei~~~~~~~g~G~S~~i~~Ggd~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~a~~~~---~~~~~KPvv~~ 78 (430)
+..+.+.+.++|+|+|++|++||+. ++++.|+|+||.+||+|++|++|.|..+ ++.+|++ +....||||++
T Consensus 14 ~~~~~~~~~~~g~g~s~~vs~Gn~~--dv~~~d~l~~~~~D~~t~~I~ly~E~~~----d~~~f~~~~~~a~~~KPVv~l 87 (138)
T PF13607_consen 14 GTAILDWAQDRGIGFSYVVSVGNEA--DVDFADLLEYLAEDPDTRVIVLYLEGIG----DGRRFLEAARRAARRKPVVVL 87 (138)
T ss_dssp HHHHHHHHHHTT-EESEEEE-TT-S--SS-HHHHHHHHCT-SS--EEEEEES--S-----HHHHHHHHHHHCCCS-EEEE
T ss_pred HHHHHHHHHHcCCCeeEEEEeCccc--cCCHHHHHHHHhcCCCCCEEEEEccCCC----CHHHHHHHHHHHhcCCCEEEE
Confidence 4678899999999999999999999 9999999999999999999999999999 4555544 22244999999
Q ss_pred ecCCcccccccccc--cccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHH
Q 014132 79 VSGTCARLFKSEVQ--FGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIK 133 (430)
Q Consensus 79 ~~G~~~~~~p~g~~--~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~ 133 (430)
|+|+++ .|++ .||||+++ |++..+.++|+++|+.++++++||.++++
T Consensus 88 k~Grt~----~g~~aa~sHTgsla----g~~~~~~a~~~~aGv~~v~~~~el~~~~~ 136 (138)
T PF13607_consen 88 KAGRTE----AGARAAASHTGSLA----GDDAVYDAALRQAGVVRVDDLDELLDAAK 136 (138)
T ss_dssp E-----------------------------HHHHHHHHHHCTEEEESSHHHHHHHHC
T ss_pred eCCCch----hhhhhhhccCCccc----CcHHHHHHHHHHcCceEECCHHHHHHHHH
Confidence 999998 6766 99999999 89999999999999999999999999864
No 48
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=99.82 E-value=2.8e-20 Score=194.82 Aligned_cols=120 Identities=22% Similarity=0.229 Sum_probs=108.0
Q ss_pred ChHHHHHHHHhcCCCeeEEEEecCCccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHHHHHHH---cCCCCCCEEE
Q 014132 1 MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALK---QGKVNKPVVA 77 (430)
Q Consensus 1 ~~~ei~~~~~~~g~G~S~~i~~Ggd~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~a~~~~---~~~~~KPvv~ 77 (430)
++++++.++.++|+|+|++||+||+. ++++.|+|+||.+||+|++|++|.|..+ ++++|++ +...+||||+
T Consensus 162 ~~~~~~~~~~~~g~g~s~~vs~Gn~~--d~~~~d~l~~l~~D~~t~~I~ly~E~~~----~~~~f~~aa~~a~~~KPVv~ 235 (447)
T TIGR02717 162 LLTALLDWAEKNGVGFSYFVSLGNKA--DIDESDLLEYLADDPDTKVILLYLEGIK----DGRKFLKTAREISKKKPIVV 235 (447)
T ss_pred HHHHHHHHHHhcCCCcceEEECCchh--hCCHHHHHHHHhhCCCCCEEEEEecCCC----CHHHHHHHHHHHcCCCCEEE
Confidence 35788899999999999999999999 8999999999999999999999999988 6666665 1123899999
Q ss_pred EecCCcccccccccc--cccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHH
Q 014132 78 WVSGTCARLFKSEVQ--FGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKE 134 (430)
Q Consensus 78 ~~~G~~~~~~p~g~~--~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~ 134 (430)
+|+||++ .|++ +||||+++ |+++.+.++|+|+|+.++++++||+++++-
T Consensus 236 ~k~Grs~----~g~~aa~sHtgala----g~~~~~~a~~~~~Gv~~~~~~~el~~~~~~ 286 (447)
T TIGR02717 236 LKSGTSE----AGAKAASSHTGALA----GSDEAYDAAFKQAGVIRADSIEELFDLARL 286 (447)
T ss_pred EecCCCh----hhhhhhhhcccccc----ChHHHHHHHHHHCCeEEeCCHHHHHHHHHH
Confidence 9999998 5765 99999999 899999999999999999999999999774
No 49
>PRK06091 membrane protein FdrA; Validated
Probab=99.59 E-value=5.2e-15 Score=155.91 Aligned_cols=108 Identities=17% Similarity=0.191 Sum_probs=92.1
Q ss_pred ChHHHHHHHHhcCCCeeEEEEecCCc----cCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHHHHHHHc-CCCCCCE
Q 014132 1 MSNELYNTIARVTDGIYEGIAIGGDV----FPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQ-GKVNKPV 75 (430)
Q Consensus 1 ~~~ei~~~~~~~g~G~S~~i~~Ggd~----i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~a~~~~~-~~~~KPv 75 (430)
+++++..++.++|+|+|++||+||+. ++|+++.|+|+||.+||+|++|++|+|+|.+.-. .+|++. ++.+|||
T Consensus 205 l~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~kppaE~v~--~~fl~aar~~~KPV 282 (555)
T PRK06091 205 GIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVSKPPAEAVR--LKIINAMKATGKPV 282 (555)
T ss_pred HHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEEecCchHHH--HHHHHHHhhCCCCE
Confidence 46899999999999999999999985 4699999999999999999999999999874322 467662 2468999
Q ss_pred EEEecCCcccccccccccccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHH
Q 014132 76 VAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFE 137 (430)
Q Consensus 76 v~~~~G~~~~~~p~g~~~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~ 137 (430)
|++|+|+++ .+. ++.|++++++++|+.+++..+..
T Consensus 283 Vvlk~Grs~----~g~-----------------------~q~GVi~a~tleEl~~~A~~la~ 317 (555)
T PRK06091 283 VALFLGYTP----AVA-----------------------RDENVWFASTLDEAARLACLLSR 317 (555)
T ss_pred EEEEecCCc----hhh-----------------------hcCCeEEeCCHHHHHHHHHHHhc
Confidence 999999988 232 89999999999999998876553
No 50
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=99.40 E-value=5.2e-13 Score=143.61 Aligned_cols=122 Identities=20% Similarity=0.204 Sum_probs=106.8
Q ss_pred hHHHHHHHHhcCCCeeEEEEecCCccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHHHHHHH---cCCCCCCEEEE
Q 014132 2 SNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALK---QGKVNKPVVAW 78 (430)
Q Consensus 2 ~~ei~~~~~~~g~G~S~~i~~Ggd~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~a~~~~---~~~~~KPvv~~ 78 (430)
+.-+..+..+.++|+|..++.||.. ++++.|++++|.+|+.|++|.+|.|... ++++|+. +....||+|++
T Consensus 167 ~~~il~~~~~~~~g~s~~vs~gn~a--d~~~~d~~~~~~~D~~tk~i~Ly~E~~~----~~r~fl~~a~~~~~~kpii~l 240 (598)
T COG1042 167 SFAILDWANEDGMGFSIKVSLGNAA--DRDESDLLEYLADDPRTKAIGLYIEGVK----DGRKFLNAARAAERKKPIIAL 240 (598)
T ss_pred HHhccchhhhcCCceeEEEeecchh--hcCchHhHHHHhhCccceEEEEEeccch----hHHHHHHHHHHHhcCCCEEEE
Confidence 3445677788899999999999998 8999999999999999999999999888 5555554 22355999999
Q ss_pred ecCCcccccccccc--cccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHH
Q 014132 79 VSGTCARLFKSEVQ--FGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFE 137 (430)
Q Consensus 79 ~~G~~~~~~p~g~~--~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~ 137 (430)
++|++. .+++ .||||+++ |++.++.++|+++|+.++++++|+++.++....
T Consensus 241 k~gr~~----~~akAa~shTgsla----g~~~~y~Aa~~~agvir~~~~~elf~~~k~l~~ 293 (598)
T COG1042 241 KAGRSE----AGAKAAASHTGSLA----GSDEAYDAAFKQAGVIRVESIEELFDAAKALSH 293 (598)
T ss_pred eccCCH----HHHHHHhccccccc----ccchhhHHHHHhhCceeccChHHHHHHHHHhcc
Confidence 999999 5766 99999999 899999999999999999999999999988754
No 51
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=99.33 E-value=3.5e-12 Score=115.10 Aligned_cols=116 Identities=32% Similarity=0.363 Sum_probs=101.1
Q ss_pred ChHHHHHHHHhc--------------CCCeeEEEEecCCccC---------CCCHHHHHHHhhcCCCccEEEEeeccC-C
Q 014132 1 MSNELYNTIARV--------------TDGIYEGIAIGGDVFP---------GSTLSDHILRFNNIPQVKMMVVLGELG-G 56 (430)
Q Consensus 1 ~~~ei~~~~~~~--------------g~G~S~~i~~Ggd~i~---------g~~~~d~l~~l~~Dp~T~~Ivl~gE~~-~ 56 (430)
|++|.+.+++.. |.+.+.+|.+|+|.+. ++.+.++|+.+.+||+|++|++.+++| +
T Consensus 7 L~~Ea~~~i~~~~~~~~sn~~~~~~~g~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIlvd~~~G~g 86 (153)
T PF00549_consen 7 LAMEAMDLISDALGDVYSNFKLANPLGGGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVILVDIVGGIG 86 (153)
T ss_dssp HHHHHHHHHHHTTT------GCCEEETCTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEEEEEESSSS
T ss_pred HHHHHHHHHHHhhccccccccccccCCCCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEEEEeccccC
Confidence 689999999999 9999999999999998 899999999999999999999999999 7
Q ss_pred hhHHHHHHHHHc---CC---CCCCEEEEecCCcccccccccccccccccccCCcCcHHHHHHHHHHCCC
Q 014132 57 RDEYSLVEALKQ---GK---VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGA 119 (430)
Q Consensus 57 ~~E~~~a~~~~~---~~---~~KPvv~~~~G~~~~~~p~g~~~gHagai~~~~~g~~~~k~~~l~~~Gv 119 (430)
..|+.+.+++++ .+ .+||||+++.|+.++ ++.+|+|.+++...+.....++.++++.+++
T Consensus 87 ~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~d---pq~~~~~~~~L~~~G~~v~~s~~~A~~~A~a 152 (153)
T PF00549_consen 87 SCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNAD---PQGRMGQAGALEDAGVIVAESNAQAARAAGA 152 (153)
T ss_dssp SHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCH---TTSCHHHHHHHHCTTCSCHHHHHHHHHHHTH
T ss_pred chHHHHHHHHHHHHhccccCCCCcEEEEeeeecCC---CCCcHHHHHHHHhCCCcccccHHHHHHHcCC
Confidence 778888888762 23 678999999999994 6777899988888777888888888877663
No 52
>PRK12349 citrate synthase 3; Provisional
Probab=97.10 E-value=0.0022 Score=66.11 Aligned_cols=87 Identities=13% Similarity=0.062 Sum_probs=66.6
Q ss_pred HHHhhccCCC--CcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhc--
Q 014132 175 IISTISDDRG--EEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTAR-- 250 (430)
Q Consensus 175 ~~~~i~~~~g--~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aS-- 250 (430)
..++|+...| ..+.|||+|+.+|+++. ||.++.+++|+|+-|++.+.+.++..| .+|+.-++.+ ..+..+
T Consensus 15 ~~S~IS~id~~~g~L~YRGydi~dLa~~~-sFeeva~LL~~G~LP~~~e~~~f~~~L---~~~~~~p~~v--~~~l~~~p 88 (369)
T PRK12349 15 AETKISFLDTVKGEIVIQGYDLIELSKTK-EYLDIVHLLLEEHLPNEDEKATLEKKL---KEEYAVPEGV--FNILKALP 88 (369)
T ss_pred eeeeceeEeCCCCEEEECCccHHHHHccC-CHHHHHHHHHCCCCCCHHHHHHHHHHH---HhccCCCHHH--HHHHHhCC
Confidence 3356655433 35999999999999887 999999999999889999999999987 5898877763 223333
Q ss_pred cCCChHHHHHHhhhccC
Q 014132 251 AGKDLVSSLVSGLLTIG 267 (430)
Q Consensus 251 t~a~~~~av~Agl~a~G 267 (430)
..+++-..+.+++++++
T Consensus 89 ~~~~pm~~l~~~vs~l~ 105 (369)
T PRK12349 89 KETHPMDGLRTGVSALA 105 (369)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 35688888888887764
No 53
>PRK14032 citrate synthase; Provisional
Probab=96.84 E-value=0.0017 Score=68.41 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCchhhHHHHHhcchh-----hHHHHHHhhccCCC------------CcccccCC
Q 014132 130 SAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVR-----APTHIISTISDDRG------------EEPCYAGV 192 (430)
Q Consensus 130 ~~~~~~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~l~ak~p-----~i~a~~~~i~~~~g------------~~~~~~g~ 192 (430)
..+++.+++--..+.+++. +....++-.-+. .+++..++||...| ..+.|||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~GL~~~~~~gv~~~~t~is~v~~~~~~dg~~~~~~G~L~YRGy 73 (447)
T PRK14032 4 EFLDELSELCEKNNKIDPE----------LYDKYDVKRGLRNEDGTGVLVGLTNIGDVHGYEIDDGEKIPDEGKLYYRGY 73 (447)
T ss_pred HHHHHHHHHHHHcCCcCHH----------HHHHhCCCcccccCCCCCeEEeeeEEeeeeceeecCCcccCCCCceeECCc
Confidence 4556666665555545443 222223322233 44455566665444 24899999
Q ss_pred Ccchhhhcc-----CCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhcc-CCChHHHHHHhhhcc
Q 014132 193 PMSSIVEQG-----YGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARA-GKDLVSSLVSGLLTI 266 (430)
Q Consensus 193 dl~~li~~~-----~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aSt-~a~~~~av~Agl~a~ 266 (430)
++.+|+++. .+|.+++|+||+|+-|++++.+.|+..|.-+.+ .+..++.++..+. .++|-..+.++++++
T Consensus 74 ~I~dLa~~~~~~~~~~FeEv~~LLl~G~LPt~~el~~f~~~L~~~~~----lp~~~v~~~i~~~p~~hPM~~L~a~vsaL 149 (447)
T PRK14032 74 DIKDLVNGFLKEKRFGFEEVAYLLLFGELPTKEELAEFTELLGDYRE----LPDGFTRDMILKAPSKDIMNSLARSVLAL 149 (447)
T ss_pred cHHHHHhhcccccCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC----CCHHHHHHHHHhCCCcCHHHHHHHHHHhh
Confidence 999999883 479999999999999999999999999865544 3331344444333 358899999999998
Q ss_pred CC
Q 014132 267 GP 268 (430)
Q Consensus 267 Gp 268 (430)
|.
T Consensus 150 ~~ 151 (447)
T PRK14032 150 YS 151 (447)
T ss_pred hh
Confidence 64
No 54
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=96.78 E-value=0.0048 Score=63.73 Aligned_cols=90 Identities=13% Similarity=0.003 Sum_probs=65.9
Q ss_pred HHHHHhhccCCCC--cccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhc
Q 014132 173 THIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTAR 250 (430)
Q Consensus 173 ~a~~~~i~~~~g~--~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aS 250 (430)
++..|+|+...|+ .+.|||+++.+|+++. +|.++++++|+|+.|++.+.+.++..|.-. ..-+.. +..+..+
T Consensus 9 ~~~~t~is~id~~~G~L~yRGy~i~dL~~~~-~Feev~~LLl~G~lP~~~el~~~~~~L~~~---~~lp~~--v~~~i~~ 82 (373)
T cd06112 9 PAAESSISYIDGKNGILEYRGYDIEELAEYS-SFEEVALLLLDGDLPTAAELEEFDKELRQH---RRVKYN--IRDMMKC 82 (373)
T ss_pred eeeeeeceEEeCCCCEEEECCccHHHHhcCC-CHHHHHHHHHcCCCCCHHHHHHHHHHHHHh---cCCCHH--HHHHHHh
Confidence 3445677766554 4789999999999887 999999999999999999999999988544 332332 2223322
Q ss_pred --cCCChHHHHHHhhhccCC
Q 014132 251 --AGKDLVSSLVSGLLTIGP 268 (430)
Q Consensus 251 --t~a~~~~av~Agl~a~Gp 268 (430)
..++|-..+.+++++++.
T Consensus 83 ~p~~~hpm~~L~~~vs~l~~ 102 (373)
T cd06112 83 FPETGHPMDMLQATVAALGM 102 (373)
T ss_pred CCCCCCHHHHHHHHHHhhhc
Confidence 336888888888888753
No 55
>PRK14037 citrate synthase; Provisional
Probab=96.74 E-value=0.0054 Score=63.45 Aligned_cols=91 Identities=9% Similarity=0.027 Sum_probs=64.9
Q ss_pred hHHHHHHhhccCCC--CcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHh
Q 014132 171 APTHIISTISDDRG--EEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVT 248 (430)
Q Consensus 171 ~i~a~~~~i~~~~g--~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~ 248 (430)
.+++..|.|++..+ ..+.|||+++.+|+++. +|.+++|++|+|+-|++.+.+.|+..|.-+ ..-+.. +-.+.
T Consensus 10 gv~~~~t~is~id~~~g~L~yRGy~i~dL~~~~-~Feev~~LLl~G~lP~~~e~~~f~~~L~~~---~~lp~~--v~~~~ 83 (377)
T PRK14037 10 NVIIKVTNLTFIDGEKGILRYRGYNIEDLVNYG-SYEETIYLMLYGELPTKKELNDLKEKLNEE---YEVPQE--VIDSI 83 (377)
T ss_pred CCeeeeeeceEEeCCCCEEEECCccHHHHHccC-CHHHHHHHHHcCCCCCHHHHHHHHHHHHHh---cCCCHH--HHHHH
Confidence 34445566665543 24789999999999887 999999999999999999999999988543 222222 22223
Q ss_pred hcc--CCChHHHHHHhhhccC
Q 014132 249 ARA--GKDLVSSLVSGLLTIG 267 (430)
Q Consensus 249 aSt--~a~~~~av~Agl~a~G 267 (430)
.+- .++|-..+.+++++++
T Consensus 84 ~~~p~~~hpm~~l~~~vs~l~ 104 (377)
T PRK14037 84 YLMPRDSDAIGLMEAAFAALA 104 (377)
T ss_pred HhCCccCCcHHHHHHHHHhhh
Confidence 233 3578888888888775
No 56
>PRK14036 citrate synthase; Provisional
Probab=96.73 E-value=0.0056 Score=63.34 Aligned_cols=91 Identities=15% Similarity=0.076 Sum_probs=66.4
Q ss_pred hHHHHHHhhccCCCC--cccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHh
Q 014132 171 APTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVT 248 (430)
Q Consensus 171 ~i~a~~~~i~~~~g~--~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~ 248 (430)
.+++..|+|+...|+ .+.|||+++.+|+++. +|.+++|+||+|+.|++.+.+.++..|. +|..-+.. +..+.
T Consensus 10 gv~~~~t~Is~idg~~G~L~yRGy~i~dL~~~~-~Feev~~LLl~G~lP~~~el~~f~~~L~---~~~~lp~~--v~~~i 83 (377)
T PRK14036 10 GVPATQSSISYVDGQKGILEYRGYPIEELAEKS-SFLETAYLLIWGELPTAEELEEFEQEVR---MHRRVKYR--IRDMM 83 (377)
T ss_pred CCeeeeeeceEEECCCCEEEECCccHHHHHccC-CHHHHHHHHHcCCCCCHHHHHHHHHHHH---HccCCCHH--HHHHH
Confidence 344455777766554 4789999999999887 9999999999999999999999999774 44443333 23333
Q ss_pred hcc--CCChHHHHHHhhhccC
Q 014132 249 ARA--GKDLVSSLVSGLLTIG 267 (430)
Q Consensus 249 aSt--~a~~~~av~Agl~a~G 267 (430)
.+- .++|-..+.+++++++
T Consensus 84 ~~~p~~~hpm~~L~~~vs~l~ 104 (377)
T PRK14036 84 KCFPETGHPMDALQASAAALG 104 (377)
T ss_pred HhCCCCCCHHHHHHHHHHHhh
Confidence 333 4678888888888875
No 57
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=96.59 E-value=0.0021 Score=65.97 Aligned_cols=89 Identities=15% Similarity=0.142 Sum_probs=66.7
Q ss_pred HHHHHhhccCCCC--cccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhc
Q 014132 173 THIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTAR 250 (430)
Q Consensus 173 ~a~~~~i~~~~g~--~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aS 250 (430)
+...++|+...++ .+.|||+++.+|+++. +|.++.+++|+|+-|++.+.+.++..| .+|+.-++. ...+..+
T Consensus 7 ~v~~s~is~id~~~g~l~YRG~~i~dL~~~~-~feeva~LL~~G~lP~~~el~~f~~~L---~~~~~~p~~--v~~~~~~ 80 (358)
T cd06118 7 KAKETSISYIDGDEGILRYRGYDIEELAEKS-SFEEVAYLLLYGKLPTKEELAEFKKKL---ASHRALPEH--VVEILDL 80 (358)
T ss_pred eeeeeeeeEEeCCCCeEEECCccHHHHHhcC-CHHHHHHHHHcCCCCCHHHHHHHHHHH---HHccCCCHH--HHHHHHh
Confidence 3444566654444 6999999999999887 999999999999888888888899877 678887665 3333333
Q ss_pred --cCCChHHHHHHhhhccC
Q 014132 251 --AGKDLVSSLVSGLLTIG 267 (430)
Q Consensus 251 --t~a~~~~av~Agl~a~G 267 (430)
...++-..+.+++++++
T Consensus 81 ~p~~~~pm~~l~~~~~~l~ 99 (358)
T cd06118 81 LPKNAHPMDVLRTAVSALG 99 (358)
T ss_pred cCCCCChHHHHHHHHHhhh
Confidence 35678888878887763
No 58
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=96.53 E-value=0.013 Score=60.42 Aligned_cols=89 Identities=13% Similarity=0.106 Sum_probs=62.1
Q ss_pred HHHHHhhccCCCC--cccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhc
Q 014132 173 THIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTAR 250 (430)
Q Consensus 173 ~a~~~~i~~~~g~--~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aS 250 (430)
+...++|++..|+ .+.||||++.+|..+. +|.++.|+||+|+-|++++.+-++.-|.- |..-+-. +-.+..+
T Consensus 7 ~~~~t~is~id~~~g~L~yRGy~i~dLa~~~-sfeeva~LLl~G~lPt~~el~~f~~~L~~---~~~lp~~--v~~~i~~ 80 (363)
T cd06108 7 VAGQTAISTVGKGGKGLTYRGYDIEDLAENA-TFEEVAYLLLYGKLPTRKQLDAYKTKLVA---LRRLPAA--LKTVLEL 80 (363)
T ss_pred eeeeeeCceEeCCCCEEEECCccHHHHHhcC-CHHHHHHHHHcCCCCCHHHHHHHHHHHHH---hcCCCHH--HHHHHHh
Confidence 3445667765554 5999999999999887 99999999999999988888888877643 3332222 1222222
Q ss_pred --cCCChHHHHHHhhhccC
Q 014132 251 --AGKDLVSSLVSGLLTIG 267 (430)
Q Consensus 251 --t~a~~~~av~Agl~a~G 267 (430)
..++|-..+.+++++++
T Consensus 81 ~p~~~hpm~~L~~~vs~l~ 99 (363)
T cd06108 81 IPKDSHPMDVMRTGCSMLG 99 (363)
T ss_pred CCCCCChHHHHHHHHHhhh
Confidence 23577777777777764
No 59
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=96.43 E-value=0.018 Score=59.12 Aligned_cols=106 Identities=18% Similarity=0.130 Sum_probs=69.9
Q ss_pred HHHHHHhhccCCCC--cccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhh
Q 014132 172 PTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTA 249 (430)
Q Consensus 172 i~a~~~~i~~~~g~--~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~a 249 (430)
+++..|+|+...|+ .+.||||++.+|+.+. +|.++.|+||+|+-|++++.+.|..-|.-+ ..-+..+... +-.
T Consensus 6 v~~~~t~Is~idg~~G~L~YRGy~i~dL~~~~-~feev~~LLl~G~lP~~~el~~f~~~l~~~---~~lp~~v~~~-~~~ 80 (349)
T cd06109 6 VVAAETVLSDVDGEAGRLIIRGYSVEDLAGSA-SFEDVAALLWNGFFPDLPELEEFRAALAAA---RALPDVVAAL-LPA 80 (349)
T ss_pred ceeeeeeceeEeCCCCeEEECCccHHHHHhhC-CHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCCCHHHHHH-HHh
Confidence 34455777766554 5899999999999887 999999999999999888877777766543 2222221111 111
Q ss_pred ccCCChHHHHHHhhhccCCCccCchHHHHHHHHHH
Q 014132 250 RAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDA 284 (430)
Q Consensus 250 St~a~~~~av~Agl~a~Gp~hGGa~~~a~~~l~~~ 284 (430)
-...+|-..+.+++++++... ..+.+++++..+
T Consensus 81 ~~~~~pm~~l~~~~s~~~~~~--~~~~a~~liA~~ 113 (349)
T cd06109 81 LAGLDPMDALRALLALLPDSP--DLATALRLLAAA 113 (349)
T ss_pred CCCcCHHHHHHHHHHhcCchh--HHHHHHHHHHHH
Confidence 145677888888887765431 234455555543
No 60
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic. This model includes both mitochondrial and peroxisomal forms of citrate synthase. Citrate synthase is the entry point to the TCA cycle from acetyl-CoA. Peroxisomal forms, such as SP:P08679 from yeast (recognized by the C-terminal targeting motif SKL) act in the glyoxylate cycle. Eukaryotic homologs excluded by the high trusted cutoff of this model include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans.
Probab=96.42 E-value=0.046 Score=57.45 Aligned_cols=97 Identities=7% Similarity=0.012 Sum_probs=73.4
Q ss_pred HhcchhhHHHHHHhhccCCCC-cccccCCCcchh---hhccCC------HHHHHHHhhhCCCCchhHHHHHHHHHHHhcc
Q 014132 165 KSGKVRAPTHIISTISDDRGE-EPCYAGVPMSSI---VEQGYG------VGDVISLLWFKRSLPRYCTQFIEICIMLCAD 234 (430)
Q Consensus 165 l~ak~p~i~a~~~~i~~~~g~-~~~~~g~dl~~l---i~~~~s------~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aD 234 (430)
+++-++.+.+..|.|+...|+ .+.|||+++.+| +.+. + |.+++|+||+|+-|++++.+-|..-|.-
T Consensus 39 ~~~Glrgv~~~~t~iS~iD~~~Gl~yRGy~I~dl~~~~~~~-~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~--- 114 (427)
T TIGR01793 39 VYGGMRGMKGLVWETSVLDPEEGIRFRGLSIPECQKLLPKA-KGGEEPLPEGLLWLLLTGKVPSEEQVDALSAEWRA--- 114 (427)
T ss_pred ccCccCCCcccceeceEEcCCCCeEECCeeHHHHHHHhccC-CccccCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH---
Confidence 567788899999999877664 389999999996 4455 5 8999999999999999898888887743
Q ss_pred CCCCCcchhHHHHhhcc--CCChHHHHHHhhhccC
Q 014132 235 HGPCVSGAHNTIVTARA--GKDLVSSLVSGLLTIG 267 (430)
Q Consensus 235 Hg~~~St~~aar~~aSt--~a~~~~av~Agl~a~G 267 (430)
|+.-+.. +..+.-+- ..+|-..+.+++++++
T Consensus 115 ~~~lp~~--v~~~i~~~p~~~hPM~~L~~~vsaL~ 147 (427)
T TIGR01793 115 RADLPEH--VYKTIDALPVTLHPMAQFATAVMALQ 147 (427)
T ss_pred cCCCCHH--HHHHHHhCCCCCCHHHHHHHHHHhcc
Confidence 4333333 33444444 3588899999998875
No 61
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains three Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3 which are involved in the glyoxylate cycle. AthCYS1, in addition to a peroxisomal targeting sequence, has a predicted secretory signal peptide; it may be targeted to both the secretory pathway and the peroxisomes and is thought to be located in the extracellular matrix. AthCSY1 is expr
Probab=96.40 E-value=0.017 Score=60.32 Aligned_cols=91 Identities=19% Similarity=0.195 Sum_probs=67.1
Q ss_pred hHHHHHHhhccCCCC--cccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHh
Q 014132 171 APTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVT 248 (430)
Q Consensus 171 ~i~a~~~~i~~~~g~--~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~ 248 (430)
.+++..++|++..|+ .+.||||++.+|..+. +|.++.|+||+|+-|++++.+.|+.-|. .|..-+.. +-.+.
T Consensus 31 ~~~~~~t~Is~iDg~~G~L~YRGy~I~dLa~~~-~feEv~~LLl~G~LPt~~el~~f~~~L~---~~~~lp~~--v~~~i 104 (410)
T cd06115 31 NTAVVRSKISYIDGDKGILRYRGYPIEELAEKS-TFLEVAYLLIYGNLPTKSQLSDWEFAVS---QHTAVPTG--VLDMI 104 (410)
T ss_pred CceEEEeeCeeEeCCCCeEEECCccHHHHHhcC-CHHHHHHHHHcCCCcCHHHHHHHHHHHH---HccCCCHH--HHHHH
Confidence 455566777776665 4789999999999887 9999999999999999988888888774 44443333 23333
Q ss_pred hcc--CCChHHHHHHhhhccC
Q 014132 249 ARA--GKDLVSSLVSGLLTIG 267 (430)
Q Consensus 249 aSt--~a~~~~av~Agl~a~G 267 (430)
-+- .++|-..+.++++++|
T Consensus 105 ~~~p~~~hPM~~L~~~vs~l~ 125 (410)
T cd06115 105 KSFPHDAHPMGMLVSAISALS 125 (410)
T ss_pred HhCCCCCCHHHHHHHHHHHHh
Confidence 333 4678888888888764
No 62
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=96.38 E-value=0.014 Score=60.04 Aligned_cols=88 Identities=14% Similarity=0.092 Sum_probs=62.8
Q ss_pred HHHHHhhccCCCCc--ccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhc
Q 014132 173 THIISTISDDRGEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTAR 250 (430)
Q Consensus 173 ~a~~~~i~~~~g~~--~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aS 250 (430)
++..|.|+...++. +.|||+|+.+|+++. +|.++++++|+|+.|++.+.+.++..|. .|..-+.. ...+..+
T Consensus 7 ~~~~T~IS~id~~~g~L~yRG~di~dL~~~~-~feeva~LL~~G~lP~~~e~~~f~~~l~---~~~~~p~~--v~~~~~~ 80 (356)
T cd06110 7 IAADSKISYIDGDAGILIYRGYDIHDLAENS-TFEEVAYLLWNGELPTAEELDAFKAQLA---AERELPAE--IIDLLKL 80 (356)
T ss_pred eeeeeeceEEECCCCeEEECCeeHHHHHhcC-CHHHHHHHHHcCcCCCHHHHHHHHHhhh---hccCCCHH--HHHHHHh
Confidence 34456666666654 689999999999887 9999999999999899889999999873 44443443 2333333
Q ss_pred --cCCChHHHHHHhhhcc
Q 014132 251 --AGKDLVSSLVSGLLTI 266 (430)
Q Consensus 251 --t~a~~~~av~Agl~a~ 266 (430)
..+++-..+.++++++
T Consensus 81 ~p~~~~pm~~l~~~v~~l 98 (356)
T cd06110 81 LPKDAHPMDVLRTAVSAL 98 (356)
T ss_pred CCCCCCchHHHHHHHHhh
Confidence 3567776666666665
No 63
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-neg
Probab=96.32 E-value=0.062 Score=56.48 Aligned_cols=98 Identities=11% Similarity=0.002 Sum_probs=72.0
Q ss_pred HhcchhhHHHHHHhhccCCCCc-ccccCCCcchhhhccCC---------HHHHHHHhhhCCCCchhHHHHHHHHHHHhcc
Q 014132 165 KSGKVRAPTHIISTISDDRGEE-PCYAGVPMSSIVEQGYG---------VGDVISLLWFKRSLPRYCTQFIEICIMLCAD 234 (430)
Q Consensus 165 l~ak~p~i~a~~~~i~~~~g~~-~~~~g~dl~~li~~~~s---------~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aD 234 (430)
..+-+..+.+..|.|++..|+. +.||||++.+|..+. + |.+++|+||+|.-|++++.+.|+.-|.-+
T Consensus 36 ~~~Gl~g~~~~~t~iS~iDg~~Gl~YRGy~I~dLa~~~-~~~~~~~~~~fEev~yLLl~G~LPt~~el~~f~~~L~~~-- 112 (427)
T cd06105 36 VYGGMRGIKGLVWETSVLDPEEGIRFRGLSIPECQKLL-PKAPGGEEPLPEGLFWLLLTGEVPTKEQVSALSKEWAAR-- 112 (427)
T ss_pred ccCCCCCceecceeceeEcCCCCeEECCccHHHHHhhC-cccccccccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--
Confidence 3455677777778888766643 889999999998876 5 89999999999999988888888876544
Q ss_pred CCCCCcchhHHHHhhcc--CCChHHHHHHhhhccCC
Q 014132 235 HGPCVSGAHNTIVTARA--GKDLVSSLVSGLLTIGP 268 (430)
Q Consensus 235 Hg~~~St~~aar~~aSt--~a~~~~av~Agl~a~Gp 268 (430)
..-+.. +..+.-+. .++|-..+.+++++++.
T Consensus 113 -~~lp~~--v~~~i~~~p~~~hPM~~L~~~vsaL~~ 145 (427)
T cd06105 113 -AALPSH--VVTMLDNFPTNLHPMSQLSAAITALNS 145 (427)
T ss_pred -CCCCHH--HHHHHHhCCCCCCHHHHHHHHHHhhhc
Confidence 332222 33344333 35888999999988753
No 64
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=96.28 E-value=0.028 Score=57.86 Aligned_cols=88 Identities=16% Similarity=0.093 Sum_probs=62.5
Q ss_pred HHHHhhccCCCC--cccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhh--
Q 014132 174 HIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTA-- 249 (430)
Q Consensus 174 a~~~~i~~~~g~--~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~a-- 249 (430)
+.-++|+...++ .+.|||+|+.+|+++. +|.++++++|+|+.|++.+.+.++.-| ..|+.-+.. +..+..
T Consensus 8 ~~~s~Is~i~~~~g~L~yRG~di~dLa~~~-~feeva~LL~~G~lP~~~e~~~f~~~l---~~~~~lp~~--~~~~~~~~ 81 (362)
T cd06111 8 ADTTAISKVMPETNSLTYRGYPVQDLAENC-SFEEVAYLLWNGELPNAAQLAEFSQRE---RSYRRLDRN--LLSLIASL 81 (362)
T ss_pred EecccceEEECCCCeEEECCccHHHHHccC-CHHHHHHHHHCCCCCCHHHHHHHHHHH---HHccCCCHH--HHHHHHhC
Confidence 344566555553 5799999999999887 999999999999989988888888865 455544444 222222
Q ss_pred ccCCChHHHHHHhhhccC
Q 014132 250 RAGKDLVSSLVSGLLTIG 267 (430)
Q Consensus 250 St~a~~~~av~Agl~a~G 267 (430)
...+++-..+.+++++++
T Consensus 82 p~~~~pm~~l~~~vs~l~ 99 (362)
T cd06111 82 PKNCHPMDVLRTAVSVLG 99 (362)
T ss_pred CCCCChHHHHHHHHHHhh
Confidence 234677777777777764
No 65
>PRK12351 methylcitrate synthase; Provisional
Probab=96.27 E-value=0.027 Score=58.32 Aligned_cols=90 Identities=10% Similarity=0.052 Sum_probs=65.8
Q ss_pred HHHHHhhccCCC--CcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhc
Q 014132 173 THIISTISDDRG--EEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTAR 250 (430)
Q Consensus 173 ~a~~~~i~~~~g--~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aS 250 (430)
++.-|+||+..| ..+.||||++.+|..+. +|.++.|+||+|+-|+..+.+.++.-|. .|..-+-. ...+..+
T Consensus 16 ~~~~T~is~i~~~~g~L~YRGy~I~dLa~~~-~feeva~LL~~G~LP~~~el~~f~~~L~---~~~~lp~~--v~~~i~~ 89 (378)
T PRK12351 16 VAGNTALCTVGKSGNDLHYRGYDILDLAEHC-EFEEVAHLLVHGKLPTQAELAAYKTKLK---ALRGLPAA--VKTVLEA 89 (378)
T ss_pred eeccccCeeEecCCCEEEECCccHHHHHhcC-CHHHHHHHHHCCCCCCHHHHHHHHHHHH---HhCCCCHH--HHHHHHh
Confidence 334567776544 36899999999999887 9999999999999998888888888774 34433333 2333333
Q ss_pred c--CCChHHHHHHhhhccCC
Q 014132 251 A--GKDLVSSLVSGLLTIGP 268 (430)
Q Consensus 251 t--~a~~~~av~Agl~a~Gp 268 (430)
- .++|-..+.+++++++.
T Consensus 90 ~p~~~hPM~~L~~~vs~l~~ 109 (378)
T PRK12351 90 IPAAAHPMDVMRTGVSVLGC 109 (378)
T ss_pred CCccCCHHHHHHHHHHhhcc
Confidence 3 46888889888888763
No 66
>PRK09569 type I citrate synthase; Reviewed
Probab=96.26 E-value=0.067 Score=56.41 Aligned_cols=99 Identities=13% Similarity=0.023 Sum_probs=70.9
Q ss_pred HhcchhhHHHHHHhhccCCCC-cccccCCCcchhhhcc--------CCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccC
Q 014132 165 KSGKVRAPTHIISTISDDRGE-EPCYAGVPMSSIVEQG--------YGVGDVISLLWFKRSLPRYCTQFIEICIMLCADH 235 (430)
Q Consensus 165 l~ak~p~i~a~~~~i~~~~g~-~~~~~g~dl~~li~~~--------~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDH 235 (430)
+..-+..+.+..|.|++..|+ .+.||||++.+|..+. -+|.+++|+||+|+-|++++.+.|+.-|.- |
T Consensus 38 ~~~GL~gv~~~~t~IS~iDg~~Gl~YRGy~I~dL~~~~p~~~~~~~~~fEev~~LLl~G~LPt~~el~~f~~~L~~---~ 114 (437)
T PRK09569 38 CIGGARDIRSLVTDISYLDPQEGIRFRGKTIPETFEALPKAPGSEYPTVESFWYFLLTGEVPTQEQVQEVVAEWKK---R 114 (437)
T ss_pred hcccccCCeecceeceeecCCCceeECCccHHHHHhhCccccccCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH---c
Confidence 345567777888888876554 3889999999998873 379999999999999998888888887744 3
Q ss_pred CCCCcchhHHHHhhccCCChHHHHHHhhhcc
Q 014132 236 GPCVSGAHNTIVTARAGKDLVSSLVSGLLTI 266 (430)
Q Consensus 236 g~~~St~~aar~~aSt~a~~~~av~Agl~a~ 266 (430)
..-+..+....-.-...++|-..+.++++++
T Consensus 115 ~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l 145 (437)
T PRK09569 115 QNVPQYVIDAIRALPRDSHPMVMLSVGILAM 145 (437)
T ss_pred CCCCHHHHHHHHhCCCCCCHHHHHHHHHHhc
Confidence 3333331222222233468888888888885
No 67
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=96.25 E-value=0.024 Score=58.49 Aligned_cols=88 Identities=13% Similarity=0.091 Sum_probs=61.3
Q ss_pred HHHHHhhccCCCCc--ccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhc
Q 014132 173 THIISTISDDRGEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTAR 250 (430)
Q Consensus 173 ~a~~~~i~~~~g~~--~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aS 250 (430)
+...+.|+...++. +.|||+|+.+|+++. +|.++++++|+|+.|++.+.+.++..|.-+ ..- +- ....+..+
T Consensus 7 ~~~~t~Is~id~~~g~l~yRG~~i~dL~~~~-~feeva~LL~~G~lP~~~e~~~f~~~l~~~---~~~-p~-~~~~~~~~ 80 (368)
T TIGR01800 7 IADETALSTIDGSEGILTYRGYDIEDLAEHA-SFEEVAYLLLHGKLPTRSELRKFKTELAKL---RGL-PD-EVIELIEA 80 (368)
T ss_pred eeeeeeceEEECCcceEEECCeeHHHHHhcC-CHHHHHHHHHcCCCCCHHHHHHHHHHHHhh---cCC-CH-HHHHHHHh
Confidence 33446676666666 899999999999887 999999999999989988988898876643 222 22 12222222
Q ss_pred c--CCChHHHHHHhhhcc
Q 014132 251 A--GKDLVSSLVSGLLTI 266 (430)
Q Consensus 251 t--~a~~~~av~Agl~a~ 266 (430)
- .+++-..+.++++++
T Consensus 81 ~p~~~~pm~~l~~~ls~l 98 (368)
T TIGR01800 81 LPAESHPMDALRTAVSYL 98 (368)
T ss_pred CCCCCCcHHHHHHHHHHh
Confidence 2 356666666666665
No 68
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group is similar to gram-negative Escherichia coli (Ec) CS (type II, gltA) and Arabidopsis thaliana (Ath) peroxisomal (Per) CS. However EcCS and AthPerCS are not found in this group. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers w
Probab=96.23 E-value=0.037 Score=57.42 Aligned_cols=92 Identities=18% Similarity=0.124 Sum_probs=65.4
Q ss_pred HHHHHHhhccCCCC--cccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhh
Q 014132 172 PTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTA 249 (430)
Q Consensus 172 i~a~~~~i~~~~g~--~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~a 249 (430)
+++.-++|++..|+ .+.||||++.+|..+. +|.++.|+||+|+-|+.++.+.|..-|. .|..-+-.+....-.-
T Consensus 12 v~~~~t~Is~iDg~~G~L~YRGy~I~dL~~~~-~feEv~yLLl~G~lPt~~el~~f~~~L~---~~~~lp~~v~~~l~~~ 87 (384)
T cd06116 12 TASCKSAITYIDGEKGILRYRGYPIEQLAEQS-SYLEVAYLLLHGELPTKERLAQWVYDIT---RHTMTHENLKKFMDGF 87 (384)
T ss_pred eeEEeeEeeeEeCCCCeEEECCccHHHHhccC-CHHHHHHHHHCCCCCCHHHHHHHHHHHH---HccCCCHHHHHHHHhc
Confidence 44455667766554 4789999999999887 9999999999999999888888888773 4444333312221112
Q ss_pred ccCCChHHHHHHhhhccC
Q 014132 250 RAGKDLVSSLVSGLLTIG 267 (430)
Q Consensus 250 St~a~~~~av~Agl~a~G 267 (430)
.-.++|-..+.+++++++
T Consensus 88 p~~~hPM~~L~~~vs~l~ 105 (384)
T cd06116 88 RYDAHPMGILISSVAALS 105 (384)
T ss_pred CcCCCcHHHHHHHHHhhh
Confidence 234678888888888875
No 69
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=96.22 E-value=0.0088 Score=62.47 Aligned_cols=81 Identities=16% Similarity=0.141 Sum_probs=60.4
Q ss_pred cccccCCCcchhhhcc-----CCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhccC-CChHHHH
Q 014132 186 EPCYAGVPMSSIVEQG-----YGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAG-KDLVSSL 259 (430)
Q Consensus 186 ~~~~~g~dl~~li~~~-----~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aSt~-a~~~~av 259 (430)
.+.||||++.+|+.+. .+|.+++|+||+|+-|++++.+.|+..|.-+ ..-++. .+..+..+.+ .+|-..+
T Consensus 37 ~L~yRGy~I~dLa~~~p~~~~~sFEev~yLLl~G~LPt~~el~~f~~~L~~~---~~lp~~-~~~~~i~~~p~~hpM~~L 112 (406)
T cd06113 37 KLYYRGYDVEDLVNGAQKENRFGFEETAYLLLFGYLPNKEELEEFCEILSSY---RTLPDN-FVEDVILKAPSKDIMNKL 112 (406)
T ss_pred eeeECCCcHHHHHhhcccccCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHh---cCCCHH-HHHHHHHhCCCcCHHHHH
Confidence 5899999999988652 3899999999999999999999999988543 433333 2333443333 5888999
Q ss_pred HHhhhccCCCc
Q 014132 260 VSGLLTIGPRF 270 (430)
Q Consensus 260 ~Agl~a~Gp~h 270 (430)
.++++++|...
T Consensus 113 ~a~v~~l~~~~ 123 (406)
T cd06113 113 QRSVLALYSYD 123 (406)
T ss_pred HHHHHhccccC
Confidence 99998886543
No 70
>PRK14035 citrate synthase; Provisional
Probab=96.21 E-value=0.037 Score=57.23 Aligned_cols=91 Identities=14% Similarity=0.078 Sum_probs=64.7
Q ss_pred HHHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhc-
Q 014132 172 PTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTAR- 250 (430)
Q Consensus 172 i~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aS- 250 (430)
+++..++|++..|+.+.|||+++.+|..+. +|.++.|+||+|+-|++++.+-+..-|.- |..-+-. ....+-..
T Consensus 10 v~~~~s~Is~id~~~L~YRGy~i~dLa~~~-~Feeva~LLl~G~lP~~~el~~f~~~L~~---~~~lp~~-v~~~i~~~~ 84 (371)
T PRK14035 10 VIAAETKISSIIDSQLTYAGYDIDDLAENA-SFEEVIFLLWNYRLPTEEELAHLKGKLRK---YMTLNDR-VYQHFEEYS 84 (371)
T ss_pred ceEeeeeeeEecCCEeEECCccHHHHHhcC-CHHHHHHHHHCCcCCCHHHHHHHHHHHHH---cCCCCHH-HHHHHHhcC
Confidence 334457777777888999999999999887 99999999999999988888888876653 3333333 22212221
Q ss_pred -cCCChHHHHHHhhhccC
Q 014132 251 -AGKDLVSSLVSGLLTIG 267 (430)
Q Consensus 251 -t~a~~~~av~Agl~a~G 267 (430)
..++|-..+.+++++++
T Consensus 85 ~~~~hpm~~l~~~vs~l~ 102 (371)
T PRK14035 85 TDHVHPMTALRTSVSYLA 102 (371)
T ss_pred CcCCCHHHHHHHHHHHHh
Confidence 24677777777777764
No 71
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like. 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxaloacetate (OAA) to form 2-methylcitrate and CoA. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with OAA to form citrate and CoA, the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the a
Probab=96.21 E-value=0.063 Score=56.48 Aligned_cols=99 Identities=11% Similarity=0.012 Sum_probs=73.5
Q ss_pred HHhcchhhHHHHHHhhccCCCCc-ccccCCCcchhhhc-------cCCH--HHHHHHhhhCCCCchhHHHHHHHHHHHhc
Q 014132 164 IKSGKVRAPTHIISTISDDRGEE-PCYAGVPMSSIVEQ-------GYGV--GDVISLLWFKRSLPRYCTQFIEICIMLCA 233 (430)
Q Consensus 164 ~l~ak~p~i~a~~~~i~~~~g~~-~~~~g~dl~~li~~-------~~s~--~~~l~~l~~~~~~~~~~~~~l~~~lvl~a 233 (430)
.+++-+..+.+..|.+++..|+. +.||||++.+|..+ . +| .++.|+||+|+-|++++.+.|..-|.-+.
T Consensus 35 ~~~~GL~gv~~~~t~is~idg~~Gl~YRGy~I~dLa~~~~~~~~~~-~f~~Eev~yLLl~G~LPt~~el~~f~~~L~~~~ 113 (428)
T cd06106 35 NVLGGMRGLKSMLWEGSVLDAEEGIRFHGKTIPECQKELPKAPIGG-EMLPESMLWLLLTGKVPTFEQARGLSKELAERG 113 (428)
T ss_pred HhcccccCCeeeeecCeEECCCCCeeECCCcHHHHHhhCccccccC-CccHHHHHHHHHcCcCCCHHHHHHHHHHHHHcC
Confidence 35677888888889988765533 88999999999887 4 67 88999999999999888888888665543
Q ss_pred cCCCCCcchhHHHHhhc--cCCChHHHHHHhhhccCC
Q 014132 234 DHGPCVSGAHNTIVTAR--AGKDLVSSLVSGLLTIGP 268 (430)
Q Consensus 234 DHg~~~St~~aar~~aS--t~a~~~~av~Agl~a~Gp 268 (430)
.-+.. ...+.-+ ..++|-..+.+++++++.
T Consensus 114 ---~lp~~--v~~~i~~~p~~~hPM~~L~~~vs~L~~ 145 (428)
T cd06106 114 ---KLPHY--IEKLLDSLPKTLHPMTQLSIGVAALNH 145 (428)
T ss_pred ---CCCHH--HHHHHHhCCCCCCHHHHHHHHHHhccc
Confidence 22222 3333333 346899999999988864
No 72
>TIGR01798 cit_synth_I citrate synthase I (hexameric type). This model describes one of several distinct but closely homologous classes of citrate synthase, the protein that brings carbon (from acetyl-CoA) into the TCA cycle. This form, class I, is known to be hexameric and allosterically inhibited by NADH in Escherichia coli, Acinetobacter anitratum, Azotobacter vinelandii, Pseudomonas aeruginosa, etc. In most species with a class I citrate synthase, a dimeric class II isozyme is found. The class II enzyme may act primarily on propionyl-CoA to make 2-methylcitrate or be bifunctional, may be found among propionate utilization enzymes, and may be constitutive or induced by propionate. Some members of this model group as class I enzymes, and may be hexameric, but have shown regulatory properties more like class II enzymes.
Probab=96.09 E-value=0.025 Score=59.24 Aligned_cols=92 Identities=13% Similarity=0.052 Sum_probs=66.4
Q ss_pred hhHHHHHHhhccCCCC--cccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHH
Q 014132 170 RAPTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIV 247 (430)
Q Consensus 170 p~i~a~~~~i~~~~g~--~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~ 247 (430)
..+++..++|++..|+ .+.||||++.+|..+. +|.+..|+||+|+-|++++.+.|..-|. .|..-+.. +..+
T Consensus 37 ~~v~~~~s~Is~iDg~~G~L~YRGy~I~dL~~~~-~feEv~yLLl~G~LPt~~el~~f~~~L~---~~~~lp~~--v~~~ 110 (412)
T TIGR01798 37 TSTASCESKITFIDGDKGILLYRGYPIDQLATKS-DYLEVCYLLLNGELPTAEQKDEFDDTVT---RHTMVHEQ--VTRF 110 (412)
T ss_pred CCceeEeeeCeeEeCCCCEEEECCccHHHHhccC-CHHHHHHHHHcCCCCCHHHHHHHHHHHH---HccCCCHH--HHHH
Confidence 3455566777776665 4789999999999887 9999999999999999989888888774 33333333 2223
Q ss_pred hhcc--CCChHHHHHHhhhccC
Q 014132 248 TARA--GKDLVSSLVSGLLTIG 267 (430)
Q Consensus 248 ~aSt--~a~~~~av~Agl~a~G 267 (430)
.-+. ..+|-..+.++++++|
T Consensus 111 i~~~p~~~hPM~~L~~~vs~l~ 132 (412)
T TIGR01798 111 FNGFRRDAHPMAVMVGVVGALS 132 (412)
T ss_pred HHhCCCcCChHHHHHHHHHHHh
Confidence 3233 3578888888887765
No 73
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of ide
Probab=96.09 E-value=0.054 Score=56.22 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=66.3
Q ss_pred HHHHHHhhccCCCC--cccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhh
Q 014132 172 PTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTA 249 (430)
Q Consensus 172 i~a~~~~i~~~~g~--~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~a 249 (430)
+++..++|+...|+ .+.||||++.+|..+. +|.+++|+||+|+-|++.+.+.|..-|.-+ ..-+.. +..+.-
T Consensus 12 v~~~~t~Is~iDg~~G~L~YRGy~I~dLa~~~-~feev~yLLl~G~LPt~~el~~f~~~L~~~---~~lp~~--v~~~i~ 85 (382)
T cd06107 12 TAVCESSITYIDGDKGILLYRGYPIEQLAESS-TYEEVAYLLLWGELPTQEQYDEFQRRLSEH---MMVPES--VHRLIQ 85 (382)
T ss_pred eeeEeeeCeeEeCCCCeEEECCccHHHHHhcC-CHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---cCCCHH--HHHHHH
Confidence 34455677766554 5789999999999988 999999999999999888888888866554 333232 333332
Q ss_pred --ccCCChHHHHHHhhhccCC
Q 014132 250 --RAGKDLVSSLVSGLLTIGP 268 (430)
Q Consensus 250 --St~a~~~~av~Agl~a~Gp 268 (430)
...++|-..+.++++++|.
T Consensus 86 ~~p~~~hPM~~L~~~vs~l~~ 106 (382)
T cd06107 86 TFPRDAHPMGILCAGLSALSA 106 (382)
T ss_pred hCCCCCCcHHHHHHHHHhhcc
Confidence 3347888888888888764
No 74
>PRK14033 citrate synthase; Provisional
Probab=96.05 E-value=0.045 Score=56.68 Aligned_cols=91 Identities=12% Similarity=0.063 Sum_probs=62.9
Q ss_pred hHHHHHHhhccCCCC--cccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHh
Q 014132 171 APTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVT 248 (430)
Q Consensus 171 ~i~a~~~~i~~~~g~--~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~ 248 (430)
.++...++|+...++ .+.|||+|+.+|+++. +|.++++++|+|+.|++.+.+.++.-|. .|..-+.. +..+.
T Consensus 15 gv~v~~S~Is~id~~~g~L~yRG~di~dLa~~~-sfeeva~LL~~G~lP~~~el~~f~~~l~---~~~~~p~~--v~~~~ 88 (375)
T PRK14033 15 GVVVDTTAISKVVPETNSLTYRGYPVQDLAARC-SFEEVAYLLWNGELPTDAELALFSQRER---AYRRLDRS--VLSLI 88 (375)
T ss_pred CceEeeccCeEEECCCCeEEECCccHHHHHhcC-CHHHHHHHHHcCCCCCHHHHHHHHHHHH---HccCCCHH--HHHHH
Confidence 344455666665554 5799999999999887 9999999999998888888888888663 33333333 22222
Q ss_pred h--ccCCChHHHHHHhhhccC
Q 014132 249 A--RAGKDLVSSLVSGLLTIG 267 (430)
Q Consensus 249 a--St~a~~~~av~Agl~a~G 267 (430)
. -...++-..+.+++++++
T Consensus 89 ~~~p~~~~pm~~l~~~vs~l~ 109 (375)
T PRK14033 89 DKLPTTCHPMDVVRTAVSYLG 109 (375)
T ss_pred HhCCCCCCHHHHHHHHHHHhc
Confidence 2 234577777777777654
No 75
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=96.04 E-value=0.039 Score=56.97 Aligned_cols=89 Identities=9% Similarity=0.058 Sum_probs=65.0
Q ss_pred HHHHHhhccCCCC--cccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhc
Q 014132 173 THIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTAR 250 (430)
Q Consensus 173 ~a~~~~i~~~~g~--~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aS 250 (430)
++..|+||+..|+ .+.||||++.+|..+. +|.++.|+||+|+-|++.+.+-|..-|.- |..-+.. ...+..+
T Consensus 7 ~~~~T~is~v~~~~g~L~YRGy~i~dLa~~~-~FEeva~LL~~G~lPt~~el~~f~~~L~~---~~~lp~~--v~~~i~~ 80 (366)
T cd06117 7 AAGNTALCTVGRSGNDLHYRGYDILDLAEKC-EFEEVAHLLVHGKLPTKSELAAYKTKLKS---LRGLPAN--VKTALEQ 80 (366)
T ss_pred eEecccCeeeecccCEEEECCccHHHHHhcC-CHHHHHHHHHcCCCCCHHHHHHHHHHHHH---ccCCCHH--HHHHHHh
Confidence 3445667765443 6889999999999887 99999999999999998888888887743 4333232 3334433
Q ss_pred c--CCChHHHHHHhhhccC
Q 014132 251 A--GKDLVSSLVSGLLTIG 267 (430)
Q Consensus 251 t--~a~~~~av~Agl~a~G 267 (430)
- .++|-..+.+++++++
T Consensus 81 ~p~~~hpm~~l~~~vs~l~ 99 (366)
T cd06117 81 LPAAAHPMDVMRTGVSVLG 99 (366)
T ss_pred CCccCCHHHHHHHHHhhhc
Confidence 3 3688888888888875
No 76
>PRK14034 citrate synthase; Provisional
Probab=96.01 E-value=0.03 Score=57.93 Aligned_cols=88 Identities=15% Similarity=0.158 Sum_probs=62.8
Q ss_pred HHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhcc--
Q 014132 174 HIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARA-- 251 (430)
Q Consensus 174 a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aSt-- 251 (430)
+..++|+...++.+.|||+++.+|..+. +|.++.|+||+|+-|++++.+.+..-|.-+. .-+-. +..+.-+-
T Consensus 12 ~~~s~is~i~~~~L~YRGy~i~dLa~~~-~fEeva~LLl~G~lPt~~el~~f~~~L~~~~---~lp~~--v~~~l~~~p~ 85 (372)
T PRK14034 12 ATTSSVSSIIDDTLTYVGYNIDDLAENA-SFEEVVYLLWHRKLPNKQELAEFKEQLSENA---KVPGE--IIEHLKQYDL 85 (372)
T ss_pred EeeeEeeccCCCeEEECCccHHHHhccC-CHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc---CCCHH--HHHHHHhCCC
Confidence 3446666666778999999999999887 9999999999999998888888887666543 22222 22222222
Q ss_pred -CCChHHHHHHhhhccC
Q 014132 252 -GKDLVSSLVSGLLTIG 267 (430)
Q Consensus 252 -~a~~~~av~Agl~a~G 267 (430)
.++|-..+.++++++|
T Consensus 86 ~~~hpm~~l~~~vs~l~ 102 (372)
T PRK14034 86 KKVHPMSVLRTAISMLG 102 (372)
T ss_pred cCcCHHHHHHHHHHhhc
Confidence 2577777777777764
No 77
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homo
Probab=95.91 E-value=0.15 Score=53.56 Aligned_cols=99 Identities=10% Similarity=0.019 Sum_probs=73.2
Q ss_pred HhcchhhHHHHHHhhccCCCC-cccccCCCcchhhhccC-------C-HHHHHHHhhhCCCCchhHHHHHHHHHHHhccC
Q 014132 165 KSGKVRAPTHIISTISDDRGE-EPCYAGVPMSSIVEQGY-------G-VGDVISLLWFKRSLPRYCTQFIEICIMLCADH 235 (430)
Q Consensus 165 l~ak~p~i~a~~~~i~~~~g~-~~~~~g~dl~~li~~~~-------s-~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDH 235 (430)
+..-+..+++..|+|++..|+ .+.||||++.+|..+.- + |.++.|+||+|+-|++++.+.|+..|. .|
T Consensus 36 ~~~GL~gv~~~~t~Is~iDg~~Gl~YRGy~I~dLa~~~~~~~~~~~~~fEev~yLLl~G~LPt~~el~~f~~~L~---~~ 112 (426)
T cd06103 36 VIGGMRGMKGLVYETSVLDPDEGIRFRGKTIPECQELLPKADGGGEPLPEGLFWLLLTGEVPTEEQVDELSKEWA---KR 112 (426)
T ss_pred hccCcCCCeeeeeeCeeEcCCCCeEECCccHHHHHhhCccccccCcCcHHHHHHHHHCCCCCCHHHHHHHHHHHH---Hc
Confidence 455677788888999877664 47899999999988741 2 889999999999999988888888776 34
Q ss_pred CCCCcchhHHHHhhcc--CCChHHHHHHhhhccCC
Q 014132 236 GPCVSGAHNTIVTARA--GKDLVSSLVSGLLTIGP 268 (430)
Q Consensus 236 g~~~St~~aar~~aSt--~a~~~~av~Agl~a~Gp 268 (430)
..- +. .+..+.-+- .++|-..+.+++++++.
T Consensus 113 ~~l-p~-~v~~~i~~~p~~~hPM~~L~~~vs~L~~ 145 (426)
T cd06103 113 AEV-PS-HVVKMIDNLPRNLHPMTQLSAAILALQS 145 (426)
T ss_pred CCC-CH-HHHHHHHhCCCCCChHHHHHHHHHhccc
Confidence 332 32 233334333 35899999999998854
No 78
>PLN02456 citrate synthase
Probab=95.73 E-value=0.048 Score=57.80 Aligned_cols=93 Identities=19% Similarity=0.231 Sum_probs=67.9
Q ss_pred hhhHHHHHHhhccCCCC--cccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHH
Q 014132 169 VRAPTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTI 246 (430)
Q Consensus 169 ~p~i~a~~~~i~~~~g~--~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar 246 (430)
+..+++..+.|+...|+ .+.||||++.+|..+. +|.+++|+||+|+-|++++.+.|+.-| ..|..-+.. +..
T Consensus 68 l~~~~~~~s~IS~iDg~~G~L~YRGy~I~dLa~~~-~feevayLLl~G~LPt~~el~~f~~~L---~~~~~lp~~--v~~ 141 (455)
T PLN02456 68 YRNTAPVLSEISLIDGDEGILRFRGYPIEELAEKS-PFEEVAYLLLYGNLPTKEQLADWEAEL---RQHSAVPEH--VLD 141 (455)
T ss_pred cCCceeeeeeceEEeCCCCEEEECCccHHHHHhcC-CHHHHHHHHHcCcCCCHHHHHHHHHHH---HHhcCCCHH--HHH
Confidence 34555566777766653 4689999999998887 999999999999989888888888876 445544443 233
Q ss_pred Hhhcc--CCChHHHHHHhhhccC
Q 014132 247 VTARA--GKDLVSSLVSGLLTIG 267 (430)
Q Consensus 247 ~~aSt--~a~~~~av~Agl~a~G 267 (430)
+..+- .++|-..+.+++++++
T Consensus 142 ~i~~~p~~~hPM~~L~~~vsal~ 164 (455)
T PLN02456 142 VIDALPHDAHPMTQLVSGVMALS 164 (455)
T ss_pred HHHhCCCcCCcHHHHHHHHHhhh
Confidence 44333 3678888888888875
No 79
>PRK05614 gltA type II citrate synthase; Reviewed
Probab=95.32 E-value=0.077 Score=55.73 Aligned_cols=89 Identities=13% Similarity=0.090 Sum_probs=62.8
Q ss_pred HHHHHhhccCCCC--cccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhc
Q 014132 173 THIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTAR 250 (430)
Q Consensus 173 ~a~~~~i~~~~g~--~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aS 250 (430)
++.-++|+...|+ .+.|||+++.+|..+. +|.++.++||+|+-|++++.+.|..-|. .|..-+.. ...+.-+
T Consensus 53 ~~~~S~Is~iDg~~G~L~YRGy~i~dLa~~~-~feEva~LLl~G~LP~~~el~~f~~~L~---~~~~lp~~--v~~~i~~ 126 (419)
T PRK05614 53 ASCESKITYIDGDKGILLYRGYPIEQLAEKS-DFLEVCYLLLYGELPTAEQKAEFDTTVT---RHTMVHEQ--LKRFFRG 126 (419)
T ss_pred eeeeeeceeEeCCCCEEEECCccHHHHHhcC-CHHHHHHHHHcCcCCCHHHHHHHHHhHh---hccCCCHH--HHHHHHh
Confidence 3344566655543 6789999999999988 9999999999998888888888887653 33333333 2233333
Q ss_pred c--CCChHHHHHHhhhccC
Q 014132 251 A--GKDLVSSLVSGLLTIG 267 (430)
Q Consensus 251 t--~a~~~~av~Agl~a~G 267 (430)
. .++|-..+.+++++++
T Consensus 127 ~p~~~hPM~~L~~~vs~l~ 145 (419)
T PRK05614 127 FRRDAHPMAVLCGVVGALS 145 (419)
T ss_pred cCCCCCHHHHHHHHHHHHh
Confidence 3 4788888888887764
No 80
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some typ
Probab=95.26 E-value=0.076 Score=55.46 Aligned_cols=91 Identities=15% Similarity=0.046 Sum_probs=63.7
Q ss_pred hHHHHHHhhccCCCC--cccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHh
Q 014132 171 APTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVT 248 (430)
Q Consensus 171 ~i~a~~~~i~~~~g~--~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~ 248 (430)
.+++.-++|+...|+ .++|||+++.+|..+. +|.++.++||+|+-|++++.+-+..-|.-+ ..-+.. +..+.
T Consensus 33 gv~v~~S~Is~idg~~G~L~YRGy~i~dLa~~~-sfEEva~LL~~G~lP~~~el~~f~~~L~~~---~~lp~~--v~~~i 106 (400)
T cd06114 33 NTASCESAITYIDGEKGILRYRGYPIEQLAEKS-SFLEVCYLLLYGELPTAEQLQEFREEITRH---TLVHEQ--MKRFF 106 (400)
T ss_pred CceeEeeeCeEEeCCCCEEEECCccHHHHHhcC-CHHHHHHHHHcCcCCCHHHHHHHHHHHHHc---cCCCHH--HHHHH
Confidence 444455677766543 5789999999999887 999999999999888888877777766433 322333 22233
Q ss_pred hcc--CCChHHHHHHhhhccC
Q 014132 249 ARA--GKDLVSSLVSGLLTIG 267 (430)
Q Consensus 249 aSt--~a~~~~av~Agl~a~G 267 (430)
.+. ..++-..+.+++++++
T Consensus 107 ~~~p~~~~pm~~l~~~vs~l~ 127 (400)
T cd06114 107 NGFPRDAHPMAILSAMVNALS 127 (400)
T ss_pred HhcccCCCHHHHHHHHHHHHh
Confidence 333 4678888888887764
No 81
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=92.72 E-value=1.1 Score=46.45 Aligned_cols=104 Identities=24% Similarity=0.279 Sum_probs=67.1
Q ss_pred HHHHHHhcCCCeeEEEEecCCccCCCCHHHHHHHhhcCCCccEEEEe--eccCChhH--HHHHHHHHcCCCCCCEEEEec
Q 014132 5 LYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVL--GELGGRDE--YSLVEALKQGKVNKPVVAWVS 80 (430)
Q Consensus 5 i~~~~~~~g~G~S~~i~~Ggd~i~g~~~~d~l~~l~~Dp~T~~Ivl~--gE~~~~~E--~~~a~~~~~~~~~KPvv~~~~ 80 (430)
.++.+...|.-..-.+-+||. -..-.+.++|+.+.+||++++|++. |.+.+..+ +...+..++...+|||++...
T Consensus 272 t~D~~~~~g~~~aNplDlgg~-a~~~~~~~al~~l~~dp~vd~ilv~i~gg~~~~~~va~~i~~a~~~~~~~kPvvv~~~ 350 (386)
T TIGR01016 272 TMDIIKLYGGEPANFLDVGGG-ASAERVREALKLVLSDKSVKVVFINIFGGITRCDLVAKGLVEALKEVGVNVPVVVRLE 350 (386)
T ss_pred HHHHHHHcCCCCCCcEEecCC-CCHHHHHHHHHHHHcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 456777777777777777776 3356789999999999999999864 22222211 111333333233499988876
Q ss_pred CCcccccccccccccccccccCCcCcHHHHHHHHHHCC--CcccCChHHHHHHH
Q 014132 81 GTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAG--AVVPTSYEAFESAI 132 (430)
Q Consensus 81 G~~~~~~p~g~~~gHagai~~~~~g~~~~k~~~l~~~G--v~~~~~~~~l~~~~ 132 (430)
|... +...+.|++.| +++.+++++....+
T Consensus 351 g~~~-----------------------~~~~~~L~~~G~~ip~~~~~~~Av~~~ 381 (386)
T TIGR01016 351 GTNV-----------------------EEGKKILAESGLNIIFATSMEEAAEKA 381 (386)
T ss_pred CccH-----------------------HHHHHHHHHcCCCccccCCHHHHHHHH
Confidence 6222 12345688899 99998888644433
No 82
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=92.17 E-value=0.074 Score=54.68 Aligned_cols=84 Identities=15% Similarity=0.169 Sum_probs=58.3
Q ss_pred HhhccCCCCc--ccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhcc--C
Q 014132 177 STISDDRGEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARA--G 252 (430)
Q Consensus 177 ~~i~~~~g~~--~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aSt--~ 252 (430)
|+|+...|+. +.|||+++.+|+.+. +|.++.++||+|.-|++++.+.+...|.-. . ..+- .+.++..+- .
T Consensus 10 T~Is~id~~~G~L~YRGy~i~dL~~~~-sfeeva~LL~~g~lP~~~el~~f~~~l~~~---~-~lpe-~v~~~i~~lp~~ 83 (356)
T PF00285_consen 10 TSISFIDGEKGILRYRGYDIEDLAENA-SFEEVAYLLWYGELPTAEELEEFSAELKER---R-ALPE-EVIEVIEALPRD 83 (356)
T ss_dssp ESSEEEETTTTEEEETTEEHHHHHHHS-BHHHHHHHHHHSS--BHHHHHHHHHHHHCT---T-S--H-HHHHHHHCSTTT
T ss_pred eeCeEEeCCCCEEEEcCeEHHHHHhcC-CHHHHHHHHHhccCCChhhhccchhHHHhh---c-chhH-HHHHHHhhcCCC
Confidence 5566555544 999999999999976 999999999999989988888888876632 2 2333 344455444 3
Q ss_pred CChHHHHHHhhhcc
Q 014132 253 KDLVSSLVSGLLTI 266 (430)
Q Consensus 253 a~~~~av~Agl~a~ 266 (430)
++|-..+.+++.++
T Consensus 84 ~~pm~~L~~~vs~l 97 (356)
T PF00285_consen 84 AHPMDVLRAAVSAL 97 (356)
T ss_dssp S-HHHHHHHHHHHH
T ss_pred CCchHHHHHHHhhh
Confidence 56777777777775
No 83
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=91.68 E-value=1.6 Score=45.18 Aligned_cols=107 Identities=17% Similarity=0.221 Sum_probs=68.7
Q ss_pred HHHHHHhcCCCeeEEEEecCCccCCCCHHHHHHHhhcCCCccEEEEe-e-ccCChhH--HHHHHHHHcCCCCCCEEEEec
Q 014132 5 LYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVL-G-ELGGRDE--YSLVEALKQGKVNKPVVAWVS 80 (430)
Q Consensus 5 i~~~~~~~g~G~S~~i~~Ggd~i~g~~~~d~l~~l~~Dp~T~~Ivl~-g-E~~~~~E--~~~a~~~~~~~~~KPvv~~~~ 80 (430)
.++.+...|+-..--+-+||+ .....+.++|+.+.+||++++|++. . .+....+ +...+..++.+.+|||+++..
T Consensus 272 ~~D~l~~~g~~~~NPvDl~g~-~~~e~~~~aL~~l~~d~~vd~vlv~~~~~~~~~~~va~~i~~~~~~~~~~kPvv~~~~ 350 (388)
T PRK00696 272 TMDIIKLYGGEPANFLDVGGG-ATAERVAEAFKIILSDPNVKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVVRLE 350 (388)
T ss_pred HHHHHHHcCCCcCCeEEecCC-CCHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 456777788766677777776 3457789999999999999999764 2 1112111 111333332126899988775
Q ss_pred CCcccccccccccccccccccCCcCcHHHHHHHHHHCC--CcccCChHHHHHHHHHH
Q 014132 81 GTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAG--AVVPTSYEAFESAIKET 135 (430)
Q Consensus 81 G~~~~~~p~g~~~gHagai~~~~~g~~~~k~~~l~~~G--v~~~~~~~~l~~~~~~~ 135 (430)
|. . .+...+.|++.| +++.+++++-...+.++
T Consensus 351 g~-~----------------------~~~~~~~L~~~Gi~ip~f~~pe~A~~al~~~ 384 (388)
T PRK00696 351 GT-N----------------------VELGKKILAESGLNIIAADTLDDAAQKAVEA 384 (388)
T ss_pred CC-C----------------------HHHHHHHHHHCCCCceecCCHHHHHHHHHHH
Confidence 51 1 112345688999 77999999866665543
No 84
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=90.77 E-value=1.3 Score=41.82 Aligned_cols=55 Identities=27% Similarity=0.337 Sum_probs=38.0
Q ss_pred CCHHHHHHHhhcCCCccEEEEeeccCChhH---HHHHHHHHcCCCCCCEEEEecCCcc
Q 014132 30 STLSDHILRFNNIPQVKMMVVLGELGGRDE---YSLVEALKQGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 30 ~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E---~~~a~~~~~~~~~KPvv~~~~G~~~ 84 (430)
..+.+.|+.+.+||+.++|++.+..+|-.- .+..+.++..+.+|||++++-|...
T Consensus 16 ~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~ 73 (207)
T TIGR00706 16 EDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAA 73 (207)
T ss_pred HHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccc
Confidence 345667777888999999999988765331 2234444422235999999988765
No 85
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=88.92 E-value=0.95 Score=41.51 Aligned_cols=54 Identities=28% Similarity=0.247 Sum_probs=37.0
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccCChh--H-HHHHHHHHc-CCCCCCEEEEecCCcc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELGGRD--E-YSLVEALKQ-GKVNKPVVAWVSGTCA 84 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~--E-~~~a~~~~~-~~~~KPvv~~~~G~~~ 84 (430)
.+.+.++.+.+||++++|++.+..++-. + .+..+.+++ .+.+|||++++-|...
T Consensus 26 ~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~ 83 (177)
T cd07014 26 TTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAA 83 (177)
T ss_pred HHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchh
Confidence 4556666777899999999998775543 1 223334432 1368999999988766
No 86
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=88.00 E-value=0.94 Score=40.60 Aligned_cols=53 Identities=30% Similarity=0.399 Sum_probs=38.2
Q ss_pred CCHHHHHHHhhcCCCccEEEEeeccCChh--H-HHHHHHHHcCCCCCCEEEEecCCcc
Q 014132 30 STLSDHILRFNNIPQVKMMVVLGELGGRD--E-YSLVEALKQGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 30 ~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~--E-~~~a~~~~~~~~~KPvv~~~~G~~~ 84 (430)
..+.+.|+.+.+||..++|++....+|-. . .+..+.++ ..+|||++++.|...
T Consensus 14 ~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~--~~~kpvva~~~g~~~ 69 (161)
T cd00394 14 DQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQ--ASRKPVIAYVGGQAA 69 (161)
T ss_pred HHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHH--HhCCCEEEEECChhH
Confidence 34677888888999999999987654432 2 22355555 356999999988755
No 87
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=86.08 E-value=9 Score=39.98 Aligned_cols=106 Identities=15% Similarity=0.179 Sum_probs=66.8
Q ss_pred HHHHHHhcCCCeeEEEEecCCccCCCCHHHHHHHhhcCCCccEEEEee--ccCChhHHHHHH----HHHcCCCCCCEEEE
Q 014132 5 LYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLG--ELGGRDEYSLVE----ALKQGKVNKPVVAW 78 (430)
Q Consensus 5 i~~~~~~~g~G~S~~i~~Ggd~i~g~~~~d~l~~l~~Dp~T~~Ivl~g--E~~~~~E~~~a~----~~~~~~~~KPvv~~ 78 (430)
.++++...|.-..-.+-+||. ...-.+.++++.+.+||+.++|++.. .+.+. .+.++ ..+....+|||++.
T Consensus 272 t~D~i~~~gg~paNPlDlgg~-a~~e~~~~aL~~ll~Dp~VdaVlv~i~ggi~~~--~~vA~~Ii~a~~~~~~~kPvvv~ 348 (392)
T PRK14046 272 TMDMIKLAGGEPANFLDVGGG-ASPERVAKAFRLVLSDRNVKAILVNIFAGINRC--DWVAEGVVQAAREVGIDVPLVVR 348 (392)
T ss_pred HHHHHHhcCCCCcCCEEecCC-CCHHHHHHHHHHHHcCCCCCEEEEEcCCCCCCH--HHHHHHHHHHHHhcCCCCcEEEE
Confidence 456777777777777777776 34577899999999999999998642 22232 22333 22222267999888
Q ss_pred ecCCcccccccccccccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHH
Q 014132 79 VSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFE 137 (430)
Q Consensus 79 ~~G~~~~~~p~g~~~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~ 137 (430)
..|... +.-.+.|++.|+++. ..++|-+.++++.+
T Consensus 349 l~G~~~-----------------------e~~~~iL~~~Gipvf-~~~~~~~a~~~~v~ 383 (392)
T PRK14046 349 LAGTNV-----------------------EEGRKILAESGLPII-TADTLAEAAEKAVE 383 (392)
T ss_pred cCCCCH-----------------------HHHHHHHHHcCCCee-ecCCHHHHHHHHHH
Confidence 766322 113456888887654 33355556665554
No 88
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=86.03 E-value=1.8 Score=41.13 Aligned_cols=55 Identities=25% Similarity=0.441 Sum_probs=36.9
Q ss_pred CCHHHHHHHhhcCCCccEEEEeeccCChh--H-HHHHHHHHcCCCCCCEEEEecCCcc
Q 014132 30 STLSDHILRFNNIPQVKMMVVLGELGGRD--E-YSLVEALKQGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 30 ~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~--E-~~~a~~~~~~~~~KPvv~~~~G~~~ 84 (430)
..+.+.|+.+.+||+.++|++....++-. . ++..+.++..+.+||||+++-|...
T Consensus 28 ~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~a~ 85 (214)
T cd07022 28 EGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGLAA 85 (214)
T ss_pred HHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCchh
Confidence 46777888888999999999987665522 1 1223333321127999999988644
No 89
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=83.96 E-value=2 Score=40.44 Aligned_cols=55 Identities=22% Similarity=0.285 Sum_probs=38.2
Q ss_pred CCHHHHHHHhhcCCCccEEEEeeccCChh--H-HHHHHHHHc-CCCCCCEEEEecCCcc
Q 014132 30 STLSDHILRFNNIPQVKMMVVLGELGGRD--E-YSLVEALKQ-GKVNKPVVAWVSGTCA 84 (430)
Q Consensus 30 ~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~--E-~~~a~~~~~-~~~~KPvv~~~~G~~~ 84 (430)
..+.+.|+.+.+||+.++|++.+..+|-. + ++..+.++. .+.+|||++++-|.+.
T Consensus 20 ~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~ 78 (208)
T cd07023 20 DSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAA 78 (208)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcch
Confidence 45677888888999999999998765543 1 122333331 1358999999988764
No 90
>PRK12350 citrate synthase 2; Provisional
Probab=83.73 E-value=0.66 Score=47.70 Aligned_cols=47 Identities=26% Similarity=0.309 Sum_probs=37.7
Q ss_pred HHHHHhhccCCCC--cccccCCCcchhhhccCCHHHHHHHhhhCCCCchh
Q 014132 173 THIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRY 220 (430)
Q Consensus 173 ~a~~~~i~~~~g~--~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~ 220 (430)
++.-++|++..|+ .+.||||++.+|..+. ||.++.|+||+|.-|+..
T Consensus 9 ~~~~s~Is~idg~~G~L~YRGy~i~dLa~~~-sFeEva~LL~~G~LP~~~ 57 (353)
T PRK12350 9 VAFETEIAEPDGDGGALRYRGVDIEDLVGRV-TFEDVWALLVDGRFGPGL 57 (353)
T ss_pred eeEeeeCcceeCCCCEEEECCccHHHHhccC-CHHHHHHHHHCCCCCCcc
Confidence 3444667766665 5889999999999988 999999999999877653
No 91
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=83.72 E-value=7.9 Score=41.06 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=54.5
Q ss_pred CCHHHHHHHhhcCCCccEEEEeeccCChhH-HHH----HHHHHcCCCCCCEEEEecCCcccccccccccccccccccCCc
Q 014132 30 STLSDHILRFNNIPQVKMMVVLGELGGRDE-YSL----VEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEM 104 (430)
Q Consensus 30 ~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E-~~~----a~~~~~~~~~KPvv~~~~G~~~~~~p~g~~~gHagai~~~~~ 104 (430)
-.+.++++.+.+||++++|+++-=++...+ ... .+..++. .+|||+++..|...
T Consensus 356 ~~~~~al~~l~~dp~vd~Vlv~~~~~~~~~~~~~a~~l~~~~~~~-~~KPvv~~~~gg~~-------------------- 414 (447)
T TIGR02717 356 ERYAKALKTVAEDENVDGVVVVLTPTAMTDPEEVAKGIIEGAKKS-NEKPVVAGFMGGKS-------------------- 414 (447)
T ss_pred HHHHHHHHHHHcCCCCCEEEEEccCCccCCHHHHHHHHHHHHHhc-CCCcEEEEecCCcc--------------------
Confidence 467899999999999999975532322221 122 2222321 28999887654211
Q ss_pred CcHHHHHHHHHHCCCcccCChHHHHHHHHHHHH
Q 014132 105 ESAQAKNQALRDAGAVVPTSYEAFESAIKETFE 137 (430)
Q Consensus 105 g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~ 137 (430)
.+...+.|++.|+++.+++++-...+...++
T Consensus 415 --~~~~~~~L~~~Gip~f~~p~~A~~al~~~~~ 445 (447)
T TIGR02717 415 --VDPAKRILEENGIPNYTFPERAVKALSALYR 445 (447)
T ss_pred --HHHHHHHHHhCCCCccCCHHHHHHHHHHHHh
Confidence 1123456889999999999987777665543
No 92
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=83.05 E-value=1.7 Score=41.53 Aligned_cols=52 Identities=21% Similarity=0.217 Sum_probs=35.4
Q ss_pred CCHHHHHHHhhcCCCccEEEEeeccCChhH---HHHHHHHHc-CCCCCCEEEEecC
Q 014132 30 STLSDHILRFNNIPQVKMMVVLGELGGRDE---YSLVEALKQ-GKVNKPVVAWVSG 81 (430)
Q Consensus 30 ~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E---~~~a~~~~~-~~~~KPvv~~~~G 81 (430)
.++.+.|+...+||..++|++.+..++-.= ++..+.++. ++.+|||+++..|
T Consensus 32 ~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~ 87 (222)
T cd07018 32 RDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADG 87 (222)
T ss_pred HHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCC
Confidence 456667777888999999999987666441 222333331 1357999999876
No 93
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=80.95 E-value=10 Score=40.01 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=56.5
Q ss_pred HHHHHHhcCCCeeEEEEecCCccCCCCHHHHHHHhhcCCCccEEEE--eeccCChhHHH--HHHHHHcCCCCCCEEEEec
Q 014132 5 LYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVV--LGELGGRDEYS--LVEALKQGKVNKPVVAWVS 80 (430)
Q Consensus 5 i~~~~~~~g~G~S~~i~~Ggd~i~g~~~~d~l~~l~~Dp~T~~Ivl--~gE~~~~~E~~--~a~~~~~~~~~KPvv~~~~ 80 (430)
.++++...|.-..-+.-+||.+- .-.+.++++.+..||+.|+|++ +|-+-+-.+.- ..+.+++...++|||.=..
T Consensus 307 TmD~i~~~Gg~pANFlD~GG~a~-~~~v~~a~~ii~~d~~vk~iliNIfGGI~~cd~iA~gii~a~~~~~~~~pivvRl~ 385 (422)
T PLN00124 307 TMDIIKLHGGSPANFLDVGGNAS-EQQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKQVGLKVPLVVRLE 385 (422)
T ss_pred HHHHHHHcCCCcceeeecCCCCC-HHHHHHHHHHHhcCCCCcEEEEEecCCccchHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 45666667777777888888652 3567899999999999999988 77766654321 1333444457899999887
Q ss_pred CCcc
Q 014132 81 GTCA 84 (430)
Q Consensus 81 G~~~ 84 (430)
|...
T Consensus 386 Gtn~ 389 (422)
T PLN00124 386 GTNV 389 (422)
T ss_pred CCCH
Confidence 7666
No 94
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=80.23 E-value=3.4 Score=39.09 Aligned_cols=54 Identities=26% Similarity=0.255 Sum_probs=35.7
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccCChh--H-HHHHHHHHc-CCCCCCEEEEecCCcc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELGGRD--E-YSLVEALKQ-GKVNKPVVAWVSGTCA 84 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~--E-~~~a~~~~~-~~~~KPvv~~~~G~~~ 84 (430)
++.+.|+.+.+||+.++|++....+|-. + ++..+.++. ...+|||++++.|...
T Consensus 25 ~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~ 82 (211)
T cd07019 25 TTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAA 82 (211)
T ss_pred HHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeeh
Confidence 4566677778899999999975544422 2 122333321 1468999999988764
No 95
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=78.06 E-value=5.2 Score=40.48 Aligned_cols=68 Identities=28% Similarity=0.332 Sum_probs=47.1
Q ss_pred eEEEEecCCc---cCCCCHHHHHHHhhcCCCccEEEEeeccCChh--H-HHHHHHHHcCCCCCCEEEEecCCcc
Q 014132 17 YEGIAIGGDV---FPGSTLSDHILRFNNIPQVKMMVVLGELGGRD--E-YSLVEALKQGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 17 S~~i~~Ggd~---i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~--E-~~~a~~~~~~~~~KPvv~~~~G~~~ 84 (430)
+-.|..|+.+ +.+.+..+.|+....||..++|+|....||=. . +..++-++..+..|||++++.+-.+
T Consensus 67 ~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~AA 140 (317)
T COG0616 67 EGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGGYAA 140 (317)
T ss_pred eeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEECCeec
Confidence 4455555543 24567788888999999999999998887754 1 2334455533344599999877666
No 96
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=77.21 E-value=5.8 Score=38.68 Aligned_cols=53 Identities=21% Similarity=0.268 Sum_probs=35.2
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCC------hh-H--------H---HHHHHHHcCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGG------RD-E--------Y---SLVEALKQGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~------~~-E--------~---~~a~~~~~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+||+.++||+.|+.++ .- | . ...++......+||||+.+-|.+-
T Consensus 36 l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~ 106 (259)
T PRK06494 36 LEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGVAM 106 (259)
T ss_pred HHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCEEe
Confidence 5667778888999999999998741 10 1 0 011122222478999999988765
No 97
>COG0372 GltA Citrate synthase [Energy production and conversion]
Probab=75.40 E-value=3.4 Score=43.06 Aligned_cols=89 Identities=11% Similarity=0.082 Sum_probs=56.2
Q ss_pred hhhHHHHHHhhccCCCCc--ccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHH
Q 014132 169 VRAPTHIISTISDDRGEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTI 246 (430)
Q Consensus 169 ~p~i~a~~~~i~~~~g~~--~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar 246 (430)
+-.+++..++|++..|+. +.|+|+++.+|..+. +|.+..+++|.|+-|+..+...+..-+.. -|.+ .- ++.+
T Consensus 20 l~~v~~~~t~is~id~~~g~L~yrGy~i~dla~~~-~feev~~LLl~G~lPt~~el~~~~~~~~~--~~~~--~~-~~~~ 93 (390)
T COG0372 20 LEGVAACETAISYIDGDGGILRYRGYDIEDLAEKS-SFEEVAYLLLYGELPTKAELAAFFAKLAA--RRTL--PE-QVIR 93 (390)
T ss_pred ccccceeeeeeeEecCCCceEEECCccHHHHHhhc-CHHHHHHHHHcCcCCChHHHHHHHHHHHH--hcCc--cH-HHHH
Confidence 345555667777665554 899999999998885 99999999998888766554333333332 2332 22 3344
Q ss_pred Hhhcc--CCChHHHHHHhh
Q 014132 247 VTARA--GKDLVSSLVSGL 263 (430)
Q Consensus 247 ~~aSt--~a~~~~av~Agl 263 (430)
+.-+- -.+|-.++.+++
T Consensus 94 ~~~~~p~~~hpm~~l~~~v 112 (390)
T COG0372 94 LLESLPRDAHPMAVLRTAV 112 (390)
T ss_pred HHHhCCCCcCcHHHHHHHH
Confidence 44322 345666666655
No 98
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=74.39 E-value=14 Score=39.40 Aligned_cols=98 Identities=16% Similarity=0.295 Sum_probs=63.9
Q ss_pred EEEeeccCChhHHHHHHHHH--cCCCCCCEEEEecCCcccccccccc-cccc-cccccCCcCcHHHHHHHHHH--CCCcc
Q 014132 48 MVVLGELGGRDEYSLVEALK--QGKVNKPVVAWVSGTCARLFKSEVQ-FGHA-GAKSGGEMESAQAKNQALRD--AGAVV 121 (430)
Q Consensus 48 Ivl~gE~~~~~E~~~a~~~~--~~~~~KPvv~~~~G~~~~~~p~g~~-~gHa-gai~~~~~g~~~~k~~~l~~--~Gv~~ 121 (430)
|++.||.|.-.|. ++++|. ..+.+||.|++-+|.-.+.+ .... |||. ||.- |....+...|++ -|...
T Consensus 167 VLI~GESGtGKEl-vAr~IH~~S~R~~~PFVavNcaAip~~l-~ESELFGhekGAFT----GA~~~r~G~fE~A~GGTLf 240 (464)
T COG2204 167 VLITGESGTGKEL-VARAIHQASPRAKGPFIAVNCAAIPENL-LESELFGHEKGAFT----GAITRRIGRFEQANGGTLF 240 (464)
T ss_pred EEEECCCCCcHHH-HHHHHHhhCcccCCCceeeecccCCHHH-HHHHhhcccccCcC----CcccccCcceeEcCCceEE
Confidence 6777999987776 567775 33467999999888766311 1121 8886 4444 444455666643 45777
Q ss_pred cCChHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 014132 122 PTSYEAFESAIKETFEKLVEEGKIPPVKEV 151 (430)
Q Consensus 122 ~~~~~~l~~~~~~~~~~~~~~g~~~~~~e~ 151 (430)
-|.+++|+--++.-|-+....+-+++...+
T Consensus 241 LDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~ 270 (464)
T COG2204 241 LDEIGEMPLELQVKLLRVLQEREFERVGGN 270 (464)
T ss_pred eeccccCCHHHHHHHHHHHHcCeeEecCCC
Confidence 788888877777666666666777776443
No 99
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=74.05 E-value=6.9 Score=38.08 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=35.0
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCCh-----------------hHHHHHHHH-------H-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGGR-----------------DEYSLVEAL-------K-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~~-----------------~E~~~a~~~-------~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+||++++||+.|+.++. .+....+|. . -...+||||+.+-|.+.
T Consensus 35 l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 112 (260)
T PRK05980 35 LLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAF 112 (260)
T ss_pred HHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEE
Confidence 56777778889999999999976310 011111221 1 12478999999988765
No 100
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=73.07 E-value=27 Score=36.34 Aligned_cols=104 Identities=19% Similarity=0.277 Sum_probs=69.6
Q ss_pred HHHHHHhcCCCeeEEEEecCCccCCCCHHHHHHHhhcCCCccEEEEe--eccCChhHH--HHHHHHHcCCCCCCEEEEec
Q 014132 5 LYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVL--GELGGRDEY--SLVEALKQGKVNKPVVAWVS 80 (430)
Q Consensus 5 i~~~~~~~g~G~S~~i~~Ggd~i~g~~~~d~l~~l~~Dp~T~~Ivl~--gE~~~~~E~--~~a~~~~~~~~~KPvv~~~~ 80 (430)
.++.+...|.=-..+.-+||-+-.+. +.++++.+..||++|+|++- |-+.+-.+. -..+.+++.+.++|+|.=..
T Consensus 271 TmDii~~~Gg~PANFLDvGGgA~~e~-v~~a~~~il~d~~vk~IfVNIfGGI~rcD~vA~GIi~Al~e~~~~vPlVVRL~ 349 (387)
T COG0045 271 TMDIVKLYGGKPANFLDVGGGATAER-VKEAFKLILSDPNVKAIFVNIFGGITRCDEVAEGIIAALKEVGVNVPLVVRLE 349 (387)
T ss_pred HHHHHHHcCCCCcceeecCCCCCHHH-HHHHHHHHhcCCCccEEEEEEccCcCccHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 34555555665677888888664444 88999999999999999654 555544431 11334445457899999999
Q ss_pred CCcccccccccccccccccccCCcCcHHHHHHHHHHCC--CcccCChHHHHHHH
Q 014132 81 GTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAG--AVVPTSYEAFESAI 132 (430)
Q Consensus 81 G~~~~~~p~g~~~gHagai~~~~~g~~~~k~~~l~~~G--v~~~~~~~~l~~~~ 132 (430)
|...+ .| .+.++++| +..+++..+..+.+
T Consensus 350 GtN~e---~G--------------------k~iL~esg~~i~~~~~l~~aa~k~ 380 (387)
T COG0045 350 GTNVE---EG--------------------KRILAESGLNIIAADDLDEAAEKA 380 (387)
T ss_pred CCCHH---HH--------------------HHHHHHcCCceEecccHHHHHHHH
Confidence 98773 33 35777777 66666666554443
No 101
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=71.97 E-value=7.5 Score=37.84 Aligned_cols=54 Identities=17% Similarity=0.336 Sum_probs=35.9
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccCC------h-hH------HHHHH-------HHH-cCCCCCCEEEEecCCcc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELGG------R-DE------YSLVE-------ALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~~------~-~E------~~~a~-------~~~-~~~~~KPvv~~~~G~~~ 84 (430)
.+.++++.+++||++++||+.|+.++ . .| .+..+ ++. -...+||||+.+-|...
T Consensus 35 ~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 109 (260)
T PRK07657 35 ELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAINGIAL 109 (260)
T ss_pred HHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEee
Confidence 45677777888999999999998752 0 01 11111 111 12478999999988765
No 102
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=71.53 E-value=10 Score=36.71 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=36.2
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccCC-----h-hH------------HHHHHHHH-cCCCCCCEEEEecCCcc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELGG-----R-DE------------YSLVEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~~-----~-~E------------~~~a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
.+.++++.+++||+.++||+.|++.. . .| ....++++ -...+||||+.+-|..-
T Consensus 37 ~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 109 (251)
T PRK06023 37 TMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDGLAI 109 (251)
T ss_pred HHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeCCcee
Confidence 36778888889999999999998531 0 01 01122222 12478999999999765
No 103
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=71.16 E-value=12 Score=36.54 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=34.3
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCCh------h-H------HH---H----HHHHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGGR------D-E------YS---L----VEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~~------~-E------~~---~----a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+||++++||+.|+.++. - | .. . .+.+. -...+||||+.+-|..-
T Consensus 34 l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 107 (258)
T PRK09076 34 LKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAINGYAM 107 (258)
T ss_pred HHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEe
Confidence 55667777889999999999986321 0 1 00 1 11111 12478999999988655
No 104
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=71.03 E-value=8.9 Score=37.35 Aligned_cols=53 Identities=23% Similarity=0.324 Sum_probs=35.0
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCCh-------------hHHHHHHH-------HH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGGR-------------DEYSLVEA-------LK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~~-------------~E~~~a~~-------~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+||+.++||+.|+.++. .+....++ +. -...+||||+.+-|-..
T Consensus 39 l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 112 (256)
T PRK06143 39 LTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCL 112 (256)
T ss_pred HHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEe
Confidence 56677778889999999999986320 01111112 11 12478999999988655
No 105
>PRK10949 protease 4; Provisional
Probab=70.95 E-value=8.3 Score=42.72 Aligned_cols=58 Identities=26% Similarity=0.271 Sum_probs=39.8
Q ss_pred cCCCCHHHHHHHhhcCCCccEEEEeeccCChh--H-HHHHHHHH-cCCCCCCEEEEecCCcc
Q 014132 27 FPGSTLSDHILRFNNIPQVKMMVVLGELGGRD--E-YSLVEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 27 i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~--E-~~~a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.+-++.+.|+...+||..|+||+-...||-. . ++.++.++ .++.+||||++..+..+
T Consensus 347 ~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aA 408 (618)
T PRK10949 347 VGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408 (618)
T ss_pred cCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCc
Confidence 33446789999999999999999987766643 1 22333332 12357999999766654
No 106
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=70.34 E-value=11 Score=36.83 Aligned_cols=53 Identities=17% Similarity=0.296 Sum_probs=34.7
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCCh------h-H-------HH-------HHHHHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGGR------D-E-------YS-------LVEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~~------~-E-------~~-------~a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+||++++||+.|+.++. - | .+ ..+++. -...+||||+.+-|..-
T Consensus 40 l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 114 (262)
T PRK06144 40 LAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACV 114 (262)
T ss_pred HHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeee
Confidence 55677778889999999999976320 0 0 11 111221 12478999999988655
No 107
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=70.01 E-value=6.4 Score=43.29 Aligned_cols=56 Identities=20% Similarity=0.225 Sum_probs=38.4
Q ss_pred CCCHHHHHHHhhcCCCccEEEEeeccCChh--H-HHHHHHHH-cCCCCCCEEEEecCCcc
Q 014132 29 GSTLSDHILRFNNIPQVKMMVVLGELGGRD--E-YSLVEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 29 g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~--E-~~~a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+-++.+.|+...+||+.|+|++....||-. . +..++.++ ..+.+||||+++.|..+
T Consensus 331 ~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aa 390 (584)
T TIGR00705 331 GDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAA 390 (584)
T ss_pred HHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 346788899999999999999997666532 1 11222222 12356999999988655
No 108
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=69.19 E-value=10 Score=37.15 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=35.6
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccCC------h---------hHHHHHHH-------HH-cCCCCCCEEEEecCCcc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELGG------R---------DEYSLVEA-------LK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~~------~---------~E~~~a~~-------~~-~~~~~KPvv~~~~G~~~ 84 (430)
.+.++++.+.+||++++||+.|+.++ . ..+....+ +. -...+||||+.+-|...
T Consensus 42 ~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~ 118 (269)
T PRK06127 42 ALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIRGYCI 118 (269)
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEe
Confidence 45677778888999999999998632 0 00111111 11 12578999999988765
No 109
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=69.03 E-value=11 Score=41.44 Aligned_cols=87 Identities=16% Similarity=0.085 Sum_probs=49.5
Q ss_pred CCHHHHHHHhhcCCCccEEEEeec-cCC-h-hH-HHHHHHHHc-CCCCCCEEEEecCCcccccccccc--cccccccccC
Q 014132 30 STLSDHILRFNNIPQVKMMVVLGE-LGG-R-DE-YSLVEALKQ-GKVNKPVVAWVSGTCARLFKSEVQ--FGHAGAKSGG 102 (430)
Q Consensus 30 ~~~~d~l~~l~~Dp~T~~Ivl~gE-~~~-~-~E-~~~a~~~~~-~~~~KPvv~~~~G~~~~~~p~g~~--~gHagai~~~ 102 (430)
.++.+.|+...+||..++|++-.. .++ . .. ++.++-+++ ++.+|||++|--+-+. +.= .+++--|+..
T Consensus 79 ~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~~s-----~~YylAs~AD~I~~~ 153 (584)
T TIGR00705 79 FDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTNYSQ-----GQYYLASFADEIILN 153 (584)
T ss_pred HHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEccccc-----hhhhhhhhCCEEEEC
Confidence 466777778888999999999865 322 2 21 223333321 1357999998544322 111 4444444443
Q ss_pred CcCcH---------HHHHHHHHHCCCcc
Q 014132 103 EMESA---------QAKNQALRDAGAVV 121 (430)
Q Consensus 103 ~~g~~---------~~k~~~l~~~Gv~~ 121 (430)
..|+. -....+|.+.||.+
T Consensus 154 p~G~v~~~G~~~~~~~~k~~ldKlGV~~ 181 (584)
T TIGR00705 154 PMGSVDLHGFYTETLFYKGMLDKLGVRW 181 (584)
T ss_pred CCceEEeeceecccccHHHHHHHcCCeE
Confidence 32222 12567888888774
No 110
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=68.42 E-value=10 Score=36.79 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=34.0
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCCh---------------hHH-----HHHHHHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGGR---------------DEY-----SLVEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~~---------------~E~-----~~a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+||+.++||+.|+.++. .+. ...+++. -...+||||+.+.|...
T Consensus 36 l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 109 (260)
T PRK05809 36 LDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFAL 109 (260)
T ss_pred HHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeee
Confidence 55666677789999999999986210 010 0112221 12478999999988655
No 111
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=67.35 E-value=14 Score=36.04 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=35.4
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccCC------h---------hHH------HHHHHHH-cCCCCCCEEEEecCCcc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELGG------R---------DEY------SLVEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~~------~---------~E~------~~a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
.+.++++.+.+||+.++||+.|+.++ . .+. ...++.. -...+||+|+.+-|..-
T Consensus 34 el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 109 (259)
T TIGR01929 34 EIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNGYAI 109 (259)
T ss_pred HHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEEEcCEEe
Confidence 36677778888999999999998731 0 000 0112222 12578999999988655
No 112
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=66.72 E-value=6.9 Score=38.90 Aligned_cols=52 Identities=25% Similarity=0.327 Sum_probs=35.0
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccCChh------HHHHHHH--------HH----cCCCCCCEEEEecCC
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELGGRD------EYSLVEA--------LK----QGKVNKPVVAWVSGT 82 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~------E~~~a~~--------~~----~~~~~KPvv~~~~G~ 82 (430)
.+.|+++.|++|+...+||+||.....- |....++ ++ -+..+||||+.+.|-
T Consensus 68 eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~ 137 (290)
T KOG1680|consen 68 ELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGF 137 (290)
T ss_pred HHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccchhhhhhhcccceeEeeece
Confidence 4667788889999999999999875422 2111111 11 125789999977764
No 113
>PLN02600 enoyl-CoA hydratase
Probab=66.56 E-value=12 Score=36.28 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=34.3
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCCh------h-H------HHHHHHH-------H-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGGR------D-E------YSLVEAL-------K-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~~------~-E------~~~a~~~-------~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+||+.++||+.|+.++. - | .+..++. . -...+||||+.+.|...
T Consensus 27 l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 100 (251)
T PLN02600 27 LRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGAAL 100 (251)
T ss_pred HHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEecCeec
Confidence 45667777889999999999975320 0 1 1111111 1 11478999999988765
No 114
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=65.46 E-value=18 Score=35.22 Aligned_cols=53 Identities=23% Similarity=0.217 Sum_probs=35.0
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCC------h-hHH------------HHHHHHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGG------R-DEY------------SLVEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~------~-~E~------------~~a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+||+.++||+.|+.++ . .|. ...+++. -...+||||+.+-|..-
T Consensus 34 l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 106 (256)
T TIGR03210 34 LIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYAI 106 (256)
T ss_pred HHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEECCEEe
Confidence 6677777888999999999998642 0 010 0011221 12478999999988765
No 115
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=65.16 E-value=18 Score=35.32 Aligned_cols=53 Identities=23% Similarity=0.306 Sum_probs=35.3
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCCh------hH-------HH----HHHHHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGGR------DE-------YS----LVEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~~------~E-------~~----~a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+||+.++||+.|++... .+ .. ..+++. -...+||+|+.+-|.+-
T Consensus 40 l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 110 (261)
T PRK08138 40 LAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGYAL 110 (261)
T ss_pred HHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEE
Confidence 66777778889999999999975320 01 00 112222 12478999999988765
No 116
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=64.32 E-value=20 Score=32.70 Aligned_cols=54 Identities=22% Similarity=0.266 Sum_probs=34.6
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccCC-----hh-H------HH--HHHHH-------H-cCCCCCCEEEEecCCcc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELGG-----RD-E------YS--LVEAL-------K-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~~-----~~-E------~~--~a~~~-------~-~~~~~KPvv~~~~G~~~ 84 (430)
.+.++++.+.+|++.++|++.|.+.. .- + .+ ..++. + -...+||+|+.+.|...
T Consensus 30 ~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G~a~ 105 (195)
T cd06558 30 ELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAAL 105 (195)
T ss_pred HHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCeee
Confidence 46677888888999999999997221 00 0 00 11121 1 12478999999988655
No 117
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=64.06 E-value=69 Score=33.85 Aligned_cols=121 Identities=24% Similarity=0.266 Sum_probs=75.8
Q ss_pred HHHHHhcCCCeeEEEEecCCccCCCC--HHHHHHHhhcCCCccEEEEeeccCCh-----hHHHHHHHHHcCCCCCCEEEE
Q 014132 6 YNTIARVTDGIYEGIAIGGDVFPGST--LSDHILRFNNIPQVKMMVVLGELGGR-----DEYSLVEALKQGKVNKPVVAW 78 (430)
Q Consensus 6 ~~~~~~~g~G~S~~i~~Ggd~i~g~~--~~d~l~~l~~Dp~T~~Ivl~gE~~~~-----~E~~~a~~~~~~~~~KPvv~~ 78 (430)
...+.. .-++..++=+|||++.-.+ +..+++.+.+-|..+.|-+....+-. .+ +..+.++.. +|+...
T Consensus 147 i~yI~~-~p~I~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~P~RIT~-ell~~Lk~~---~~~~v~ 221 (417)
T TIGR03820 147 IEYIRN-TPQIRDVLLSGGDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVVLPQRITD-ELVAILKKH---HPVWLN 221 (417)
T ss_pred HHHHHh-cCCCCEEEEeCCccccCChHHHHHHHHHHhhcCCCceEEEeeccccccccccCH-HHHHHHHhc---CCeEEE
Confidence 344443 3578889999999975555 44457888888888877665552222 12 345555532 354332
Q ss_pred ecCCcccccccccccccccccccCCcCcHHHHHHHHHHCCCccc------CChHHHHHHHHHHHHHHhhcCCCCC
Q 014132 79 VSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVP------TSYEAFESAIKETFEKLVEEGKIPP 147 (430)
Q Consensus 79 ~~G~~~~~~p~g~~~gHagai~~~~~g~~~~k~~~l~~~Gv~~~------~~~~~l~~~~~~~~~~~~~~g~~~~ 147 (430)
+ .+.|.--+. ..+....+.|+++|+.+. +...+-.+++++.+++|++.|...+
T Consensus 222 ~------------h~nhp~Eit----~~a~~Al~~L~~aGI~l~nQsVLLkGVND~~~~l~~L~~~L~~~gV~PY 280 (417)
T TIGR03820 222 T------------HFNHPREIT----ASSKKALAKLADAGIPLGNQSVLLAGVNDCPRIMKKLVHKLVANRVRPY 280 (417)
T ss_pred E------------eCCChHhCh----HHHHHHHHHHHHcCCEEEeeceEECCcCCCHHHHHHHHHHHHHCCCeec
Confidence 2 122332222 445557788899998744 4567777888888899988886555
No 118
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=63.93 E-value=19 Score=35.34 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=35.0
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCC------------h----hHH-----HHHHHHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGG------------R----DEY-----SLVEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~------------~----~E~-----~~a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+||+.++||+.|+.+. . .+. ...++.+ -...+||||+.+.|..-
T Consensus 45 l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 119 (273)
T PRK07396 45 MIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMVAGYAI 119 (273)
T ss_pred HHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEEECCEEe
Confidence 5677778888999999999998641 0 000 0112222 12578999999988655
No 119
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=63.48 E-value=18 Score=35.05 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=35.5
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccCCh---------------hHHH--HHH---HHH-cCCCCCCEEEEecCCcc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELGGR---------------DEYS--LVE---ALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~~~---------------~E~~--~a~---~~~-~~~~~KPvv~~~~G~~~ 84 (430)
.+.++++.+.+||+.++|++.|++... .+.. ..+ ... -...+||||+.+-|-.-
T Consensus 36 ~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 110 (257)
T COG1024 36 ELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYAL 110 (257)
T ss_pred HHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEcceEe
Confidence 356788888899999999999997310 0110 011 111 12478999999988655
No 120
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=63.36 E-value=17 Score=35.24 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=34.2
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCCh------hH--------HH---HHHHHHcCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGGR------DE--------YS---LVEALKQGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~~------~E--------~~---~a~~~~~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+||++++||+.|++... .| .. ...+.. ...+||||+.+-|...
T Consensus 35 l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~kPvIaav~G~a~ 103 (254)
T PRK08252 35 LAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTE-RPPRKPLIAAVEGYAL 103 (254)
T ss_pred HHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHH-hcCCCCEEEEECCEEe
Confidence 56677778889999999999985321 01 00 011111 2478999999988765
No 121
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=62.89 E-value=15 Score=35.50 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=35.3
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccCC-----hh-H------HHH----HHHHH-cCCCCCCEEEEecCCcc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELGG-----RD-E------YSL----VEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~~-----~~-E------~~~----a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
.+.++++.+.+||++++||+.|+... .- | .+. .++++ -...+||||+.+-|...
T Consensus 31 ~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 101 (248)
T PRK06072 31 EFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGVTA 101 (248)
T ss_pred HHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeee
Confidence 36677788888999999999998632 11 1 011 11111 12478999999988755
No 122
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=61.87 E-value=23 Score=34.46 Aligned_cols=53 Identities=23% Similarity=0.321 Sum_probs=34.9
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCC-----h----------h-HHH------HHHHHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGG-----R----------D-EYS------LVEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~-----~----------~-E~~------~a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+||+.++||+.|++.. . . ... ..+++. -...+||||+.+.|...
T Consensus 36 l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 111 (262)
T PRK05995 36 LTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVHGDAY 111 (262)
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEEECCEEE
Confidence 6677777888999999999998731 0 0 000 011121 12478999999988765
No 123
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=61.59 E-value=22 Score=34.50 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=34.8
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCCh------hH-------HH----HHHHHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGGR------DE-------YS----LVEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~~------~E-------~~----~a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+||+.++||+.|++... .| .. ..++.+ -...+||||+.+.|..-
T Consensus 34 L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 104 (255)
T PRK09674 34 LVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYAL 104 (255)
T ss_pred HHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCEee
Confidence 56677777889999999999986320 01 00 112222 12478999999988765
No 124
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=61.42 E-value=20 Score=34.80 Aligned_cols=53 Identities=15% Similarity=0.091 Sum_probs=34.8
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCCh------hH---HHH-------HHHHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGGR------DE---YSL-------VEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~~------~E---~~~-------a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.+.++.+.+||+.++||+.|+.... .| ... .+++. -...+||||+.+-|..-
T Consensus 32 l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 101 (251)
T TIGR03189 32 LSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCL 101 (251)
T ss_pred HHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCeee
Confidence 56677888889999999999986320 01 011 11221 12478999999988654
No 125
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=61.41 E-value=19 Score=34.80 Aligned_cols=53 Identities=23% Similarity=0.238 Sum_probs=34.5
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCCh------hH----------HHHHHH----HHcCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGGR------DE----------YSLVEA----LKQGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~~------~E----------~~~a~~----~~~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+||+.++||+.|++... .| ....++ .+-...+||||+.+.|...
T Consensus 35 l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 107 (249)
T PRK05870 35 LRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAAV 107 (249)
T ss_pred HHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEECCEeE
Confidence 56677778889999999999986320 01 001111 1112479999999988655
No 126
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=60.35 E-value=25 Score=34.63 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=19.7
Q ss_pred HHHHHHHhhcCCCccEEEEeecc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGEL 54 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~ 54 (430)
+.++++.+.+||+.++||+.|+.
T Consensus 42 L~~~l~~~~~d~~vrvvVl~g~g 64 (276)
T PRK05864 42 LKEALAEVSYDNSVRVVVLTGAG 64 (276)
T ss_pred HHHHHHHHhcCCCceEEEEECCC
Confidence 56677788889999999999985
No 127
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=60.29 E-value=13 Score=36.03 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.6
Q ss_pred HHHHHHHhhcCCCccEEEEeeccC
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELG 55 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~ 55 (430)
+.++++.+.+||++++||+.|++.
T Consensus 35 l~~al~~~~~d~~vr~vvl~g~g~ 58 (262)
T PRK07509 35 LIATIKRLKKDRGIRAVILSGEGG 58 (262)
T ss_pred HHHHHHHHhhCCCCeEEEEECCCC
Confidence 677888888899999999999863
No 128
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=59.68 E-value=25 Score=33.98 Aligned_cols=53 Identities=25% Similarity=0.295 Sum_probs=34.6
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCC-----h-hH-------HHH-------HHHHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGG-----R-DE-------YSL-------VEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~-----~-~E-------~~~-------a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+||++++||+.|++.. . .| .+. .++++ -...+||||+.+.|...
T Consensus 33 l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~ 106 (257)
T PRK07658 33 LSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGAAL 106 (257)
T ss_pred HHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeee
Confidence 5667777888999999999997631 0 01 011 11222 12478999999988765
No 129
>PRK05869 enoyl-CoA hydratase; Validated
Probab=59.62 E-value=28 Score=33.19 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=34.9
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccCC-----h-hH------HH---H----HHHHH-cCCCCCCEEEEecCCcc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELGG-----R-DE------YS---L----VEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~~-----~-~E------~~---~----a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
.+.+.++.+++||+.++||+.|+... . .| .+ . .+.+. -...+||||+.+.|..-
T Consensus 38 ~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~ 111 (222)
T PRK05869 38 EIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYAL 111 (222)
T ss_pred HHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEee
Confidence 35667777888999999999997531 1 01 00 1 11111 12578999999998765
No 130
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=59.45 E-value=25 Score=34.01 Aligned_cols=54 Identities=30% Similarity=0.427 Sum_probs=34.9
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccCC-----h-hHH-------HH-------HHHHH-cCCCCCCEEEEecCCcc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELGG-----R-DEY-------SL-------VEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~~-----~-~E~-------~~-------a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
.+.++++.+.+||++++||+.|++.. . .|. +. .+++. -...+||||+.+.|..-
T Consensus 32 ~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~ 106 (249)
T PRK07938 32 ALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCL 106 (249)
T ss_pred HHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEe
Confidence 35667777888999999999997631 1 110 10 11111 12478999999988765
No 131
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=59.38 E-value=22 Score=34.59 Aligned_cols=54 Identities=26% Similarity=0.374 Sum_probs=34.9
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccCC-----hh-HH-------H----------HHHHHHcCCCCCCEEEEecCCcc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELGG-----RD-EY-------S----------LVEALKQGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~~-----~~-E~-------~----------~a~~~~~~~~~KPvv~~~~G~~~ 84 (430)
.+.++++.+++||++++||+.|++.. .- |. . ...+++-...+||||+.+.|...
T Consensus 36 ~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~ 112 (263)
T PRK07799 36 IMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIAAVEGPAI 112 (263)
T ss_pred HHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHHHhcCCCCEEEEECCeEe
Confidence 35677778888999999999998621 00 10 0 01112112478999999988765
No 132
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=59.19 E-value=24 Score=34.11 Aligned_cols=54 Identities=26% Similarity=0.337 Sum_probs=34.9
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccCCh------hH--------HH----HHHHHH-cCCCCCCEEEEecCCcc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELGGR------DE--------YS----LVEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~~~------~E--------~~----~a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
.+.++++.+.+||++++||+.|+.... .| .+ ..+++. -...+||+|+.+-|..-
T Consensus 36 ~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~ 108 (259)
T PRK06688 36 ALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGPAV 108 (259)
T ss_pred HHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEECCeee
Confidence 356677778889999999999875321 00 01 111221 12478999999988765
No 133
>PLN02888 enoyl-CoA hydratase
Probab=58.42 E-value=23 Score=34.62 Aligned_cols=54 Identities=15% Similarity=0.294 Sum_probs=34.7
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccCC-----h-hHH---------H-HHHHHH-cCCCCCCEEEEecCCcc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELGG-----R-DEY---------S-LVEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~~-----~-~E~---------~-~a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
.+.++++.+.+||+.++||+.|++.. . .|. + ..+.+. -...+||||+.+-|..-
T Consensus 41 ~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~ 111 (265)
T PLN02888 41 ELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAI 111 (265)
T ss_pred HHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCeee
Confidence 45667777888999999999998621 1 010 0 011111 12478999999988655
No 134
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=58.41 E-value=20 Score=34.88 Aligned_cols=54 Identities=24% Similarity=0.268 Sum_probs=35.6
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccCCh--------------hHHHH-------HHHHH-cCCCCCCEEEEecCCcc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELGGR--------------DEYSL-------VEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~~~--------------~E~~~-------a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
.+.++++.+.+||++++||+.|++... .+.+. .+++. -...+||||+.+-|..-
T Consensus 34 ~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 109 (257)
T PRK06495 34 ELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAVNGPAL 109 (257)
T ss_pred HHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeee
Confidence 467778888889999999999975310 00011 11111 12478999999988765
No 135
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=58.24 E-value=26 Score=36.26 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=34.8
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccCC------------------hhHHH-H----HHHHH-cCCCCCCEEEEecCCcc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELGG------------------RDEYS-L----VEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~~------------------~~E~~-~----a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
.+.++++.+.+||+.++||+.|+... +.+.. . .++++ -...+||||+.+-|..-
T Consensus 59 eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIAAVnG~Ai 136 (360)
T TIGR03200 59 AIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVICRVNGMRI 136 (360)
T ss_pred HHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEee
Confidence 45667777788999999999998731 01100 0 11111 12478999999988755
No 136
>PRK06091 membrane protein FdrA; Validated
Probab=58.19 E-value=46 Score=36.39 Aligned_cols=88 Identities=19% Similarity=0.144 Sum_probs=58.5
Q ss_pred HHHHHHhhcCCCccEEEEeeccCChh-HHHH---HHHHH------cCCCCCCEEEEecCCcccccccccccccccccccC
Q 014132 33 SDHILRFNNIPQVKMMVVLGELGGRD-EYSL---VEALK------QGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGG 102 (430)
Q Consensus 33 ~d~l~~l~~Dp~T~~Ivl~gE~~~~~-E~~~---a~~~~------~~~~~KPvv~~~~G~~~~~~p~g~~~gHagai~~~ 102 (430)
.+.|....+||+|-+|++--..|--. |.-+ +.-|+ +....-+||+++.|...+ |++.
T Consensus 398 ~~~~~~~a~dp~~~VillD~vlGyGah~dpa~~l~~ai~~~~~~~~~~r~l~~v~~v~GT~~D--pQ~~----------- 464 (555)
T PRK06091 398 NQLIADLGAKPQVRVLLLDVVIGFGATADPAGSLVSAIQKACAARADGQPLYAIATVTGTERD--PQCR----------- 464 (555)
T ss_pred HHHHHHhccCCcceEEEEEeeeccCCCCChHHHHHHHHHHHHhhhhcCCceEEEEEEeCCCCC--CcCH-----------
Confidence 46677788999999996543333211 1111 11111 122446899999999875 4332
Q ss_pred CcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHH
Q 014132 103 EMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEK 138 (430)
Q Consensus 103 ~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~ 138 (430)
..-.+.|+++|+.+.+|-.+...++.++++.
T Consensus 465 -----~~q~~~L~~aGv~v~~sn~~a~~~a~~~~~~ 495 (555)
T PRK06091 465 -----SQQIATLEDAGIAVVDSLPEATLLAAALIRP 495 (555)
T ss_pred -----HHHHHHHHhCCeEEEcCcHHHHHHHHHHhhc
Confidence 1246789999999999999999888888853
No 137
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=58.17 E-value=26 Score=34.25 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=34.7
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCCh------hH--------HHH-------HHHHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGGR------DE--------YSL-------VEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~~------~E--------~~~-------a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+||+.++||+.|++... .| ... .+++. -...+||||+.+-|-.-
T Consensus 44 l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 118 (268)
T PRK07327 44 LADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAIHGPAV 118 (268)
T ss_pred HHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeee
Confidence 66777788889999999999986321 00 001 11121 12478999999988654
No 138
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=57.72 E-value=29 Score=33.58 Aligned_cols=54 Identities=15% Similarity=0.160 Sum_probs=34.9
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccCC-----hh-HHH-----H-----HHHHH-cCCCCCCEEEEecCCcc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELGG-----RD-EYS-----L-----VEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~~-----~~-E~~-----~-----a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
.+.++++.+.+||+.++||+.|+... .- |.. . .++.. -...+||||+.+.|...
T Consensus 36 ~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 106 (249)
T PRK07110 36 QLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGHAI 106 (249)
T ss_pred HHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEecCcee
Confidence 35566777788999999999997631 11 100 0 12221 12578999999999765
No 139
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=57.70 E-value=20 Score=34.84 Aligned_cols=53 Identities=21% Similarity=0.226 Sum_probs=34.6
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCCh------hH---------HHH-------HHHHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGGR------DE---------YSL-------VEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~~------~E---------~~~-------a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+||++++||+.|+.... .| ... .+++. -...+||||+.+-|.+.
T Consensus 35 l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~ 110 (260)
T PRK07511 35 GIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAA 110 (260)
T ss_pred HHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCeee
Confidence 56677778889999999999875320 01 011 12222 12478999999988765
No 140
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=57.69 E-value=1.2e+02 Score=30.85 Aligned_cols=61 Identities=21% Similarity=0.202 Sum_probs=35.8
Q ss_pred CCeeEEEEecCCccCCCC--HHHHHHHhhcCCCccEEEEeeccCCh----hHHHHHHHHHcCCCCCCEE
Q 014132 14 DGIYEGIAIGGDVFPGST--LSDHILRFNNIPQVKMMVVLGELGGR----DEYSLVEALKQGKVNKPVV 76 (430)
Q Consensus 14 ~G~S~~i~~Ggd~i~g~~--~~d~l~~l~~Dp~T~~Ivl~gE~~~~----~E~~~a~~~~~~~~~KPvv 76 (430)
-|+..++=+|||+.--.+ +.++++.+.+-|..+.|=+....++. -..+..++++. .+++++
T Consensus 158 ~~i~eV~lsGGDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~P~rit~el~~~L~~--~~~~~~ 224 (331)
T TIGR00238 158 PEIIEILISGGDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVIPQRITDELCELLAS--FELQLM 224 (331)
T ss_pred CCcCEEEEECCccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccCchhcCHHHHHHHHh--cCCcEE
Confidence 466777777888764444 66777777777766666555444332 12344556652 344544
No 141
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=57.24 E-value=25 Score=34.28 Aligned_cols=53 Identities=21% Similarity=0.343 Sum_probs=33.9
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCCh------h-H--------HHH----HHHH-HcCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGGR------D-E--------YSL----VEAL-KQGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~~------~-E--------~~~----a~~~-~~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+||+.++||+.|+.+.. - | .+. ...+ +-...+||||+.+-|..-
T Consensus 34 l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 106 (261)
T PRK03580 34 MGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYAF 106 (261)
T ss_pred HHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCCCCEEEEECCeee
Confidence 55677777889999999999986420 0 0 000 0111 112478999999988655
No 142
>PRK08139 enoyl-CoA hydratase; Validated
Probab=56.14 E-value=31 Score=33.75 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=34.6
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccCC-----h--------hHHHHH-------HHHH-cCCCCCCEEEEecCCcc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELGG-----R--------DEYSLV-------EALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~~-----~--------~E~~~a-------~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
.+.++++.+.+||+.++||+.|++.. . ...... +++. -...+||||+.+-|..-
T Consensus 42 ~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 116 (266)
T PRK08139 42 ALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVHGIAT 116 (266)
T ss_pred HHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECceee
Confidence 35566777778999999999998632 0 000011 1111 12478999999988765
No 143
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=55.91 E-value=31 Score=33.73 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=19.9
Q ss_pred CHHHHHHHhhcCCCccEEEEeecc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGEL 54 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~ 54 (430)
.+.++++.+.+||++++||+.|++
T Consensus 37 ~l~~~l~~~~~d~~vr~vVl~g~g 60 (272)
T PRK06142 37 ELPEIFRWLDADPEVRAVVLSGSG 60 (272)
T ss_pred HHHHHHHHHhhCCCeEEEEEECCC
Confidence 456677777789999999999986
No 144
>PRK08321 naphthoate synthase; Validated
Probab=55.70 E-value=28 Score=34.82 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=20.5
Q ss_pred CHHHHHHHhhcCCCccEEEEeecc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGEL 54 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~ 54 (430)
.+.++++.+++||+.++||+.|++
T Consensus 56 ~l~~al~~~~~d~~vrvvVltg~g 79 (302)
T PRK08321 56 ELYRALDHARMSPDVGCVLLTGNG 79 (302)
T ss_pred HHHHHHHHHhhCCCcEEEEEeCCC
Confidence 467788888889999999999975
No 145
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=55.49 E-value=32 Score=33.52 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=19.1
Q ss_pred HHHHHHHhhcCCCccEEEEeecc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGEL 54 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~ 54 (430)
+.++++.+.+||++++||+.|++
T Consensus 36 l~~~l~~~~~d~~vr~vVl~g~g 58 (266)
T PRK09245 36 LVAACAAINADRSVRAVILTGAG 58 (266)
T ss_pred HHHHHHHHhcCCCceEEEEECCC
Confidence 55567777889999999999885
No 146
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=55.14 E-value=31 Score=33.72 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=33.6
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCCh-------------hHHH----HHHHHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGGR-------------DEYS----LVEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~~-------------~E~~----~a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+||+.++||+.|+.... .+.. ..+++. -...+||||+.+-|...
T Consensus 36 l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~ 106 (258)
T PRK06190 36 LFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAV 106 (258)
T ss_pred HHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECCEee
Confidence 45567777889999999999974210 0000 011111 11478999999988765
No 147
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=54.92 E-value=30 Score=33.84 Aligned_cols=53 Identities=13% Similarity=0.092 Sum_probs=34.8
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCCh------hH-------------HHH---HHHHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGGR------DE-------------YSL---VEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~~------~E-------------~~~---a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+..||+.++||+.|++... .+ +.. .+++. -...+||||+.+-|..-
T Consensus 38 l~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~ 113 (265)
T PRK05674 38 LILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQGAAF 113 (265)
T ss_pred HHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEE
Confidence 56677778889999999999986320 00 001 12222 12478999999988655
No 148
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=54.92 E-value=27 Score=34.52 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=35.2
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccC-Ch-------hH--------HHHH-------HHHH-cCCCCCCEEEEecCCcc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELG-GR-------DE--------YSLV-------EALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~-~~-------~E--------~~~a-------~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
.+.++++.+.+||++++||+.|+.. +. .| +... +++. -...+||||+.+-|...
T Consensus 42 eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~ 119 (278)
T PLN03214 42 SLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVCAIRGACP 119 (278)
T ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCccc
Confidence 3667778888999999999999852 10 01 1111 1221 12478999999988765
No 149
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=54.91 E-value=33 Score=33.67 Aligned_cols=23 Identities=13% Similarity=0.372 Sum_probs=19.4
Q ss_pred HHHHHHHhhcCCCccEEEEeecc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGEL 54 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~ 54 (430)
+.++++.+.+||++++||+.|++
T Consensus 40 l~~al~~~~~d~~vrvvVltg~g 62 (275)
T PLN02664 40 FPKALSSLDQNPNVSVIILSGAG 62 (275)
T ss_pred HHHHHHHHHhCCCcEEEEEECCC
Confidence 45777778889999999999986
No 150
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=54.57 E-value=35 Score=33.07 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=34.5
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccCC-----h-------h--HHHHHHH---HH-cCCCCCCEEEEecCCcc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELGG-----R-------D--EYSLVEA---LK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~~-----~-------~--E~~~a~~---~~-~~~~~KPvv~~~~G~~~ 84 (430)
.+.++++.+.+||+.++||+.|+... . . +....++ +. -...+||||+.+-|...
T Consensus 35 ~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~ 106 (257)
T PRK05862 35 ELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYAL 106 (257)
T ss_pred HHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEe
Confidence 35566777778999999999998621 0 0 1000111 11 12478999999988765
No 151
>PLN02921 naphthoate synthase
Probab=54.10 E-value=30 Score=35.16 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=34.1
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCC------hh-H---------HHH-----HHHHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGG------RD-E---------YSL-----VEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~------~~-E---------~~~-----a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+||+.++||+.|++.+ .- + ... .++.. -...+||||+.+.|..-
T Consensus 99 L~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAaVnG~a~ 173 (327)
T PLN02921 99 LQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAV 173 (327)
T ss_pred HHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEEECCEEe
Confidence 4667777788999999999998631 00 1 000 11111 11478999999988655
No 152
>PRK10949 protease 4; Provisional
Probab=53.98 E-value=33 Score=38.05 Aligned_cols=86 Identities=13% Similarity=0.022 Sum_probs=48.4
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccC-Ch---hHHHHHHHHHc-CCCCCCEEEEecCCcccccccccc--cccccccccCC
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELG-GR---DEYSLVEALKQ-GKVNKPVVAWVSGTCARLFKSEVQ--FGHAGAKSGGE 103 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~-~~---~E~~~a~~~~~-~~~~KPvv~~~~G~~~~~~p~g~~--~gHagai~~~~ 103 (430)
++.+.|+...+||..++|++-...+ +. .-++.++-+++ ++.+|||+++ ....+ .+.= .+++--|+...
T Consensus 99 div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~----s~~YyLASaAD~I~l~P 173 (618)
T PRK10949 99 DIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAV-GDSYS----QGQYYLASFANKIYLSP 173 (618)
T ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEE-ecCcc----chhhhhhhhCCEEEECC
Confidence 4556666666899999999997764 31 11333333321 1357999997 33222 1111 44444444433
Q ss_pred cC---------cHHHHHHHHHHCCCcc
Q 014132 104 ME---------SAQAKNQALRDAGAVV 121 (430)
Q Consensus 104 ~g---------~~~~k~~~l~~~Gv~~ 121 (430)
.| ..--...+|.+.||.+
T Consensus 174 ~G~v~~~G~~~~~~~~k~lLdKlGV~~ 200 (618)
T PRK10949 174 QGVVDLHGFATNGLYYKSLLDKLKVST 200 (618)
T ss_pred CceEEEeeeecchhhHHHHHHHcCCeE
Confidence 22 2223677888999874
No 153
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=53.66 E-value=21 Score=35.68 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=19.2
Q ss_pred HHHHHHHhhcCCCccEEEEeecc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGEL 54 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~ 54 (430)
+.++++.+.+||+.++||+.|++
T Consensus 42 L~~al~~~~~d~~vrvvVl~G~G 64 (302)
T PRK08272 42 LRAAVERADLDPGVHVILVSGAG 64 (302)
T ss_pred HHHHHHHHhhCCCceEEEEEcCC
Confidence 56777778889999999999876
No 154
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=53.46 E-value=32 Score=33.60 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=32.4
Q ss_pred HHHHHHHhhcCCCccEEEEeeccC-Ch---------------h--H--HHHHHHHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELG-GR---------------D--E--YSLVEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~-~~---------------~--E--~~~a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+++|| +++||+.|+.+ +. . + ....+++. -...+||||+.+-|-.-
T Consensus 36 l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~ 108 (261)
T PRK11423 36 LMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVEGSVW 108 (261)
T ss_pred HHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEEecEEe
Confidence 566777777888 99999998642 10 0 0 00111221 12478999999988655
No 155
>PF09350 DUF1992: Domain of unknown function (DUF1992); InterPro: IPR018961 This entry represents a family of proteins that may have a role in protein folding or as a chaperone. DnaJ is a member of the J-protein family, which are defined by the presence of a J domain that can regulate the activity of 70kDa heat-shock proteins []. Some of the proteins in this entry contain a J domain.
Probab=52.90 E-value=82 Score=24.74 Aligned_cols=57 Identities=14% Similarity=0.250 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCC--CCCCCCCCCCCCCCCcHH----HHHHHHHHHHhCCCChHHHHHHHHHHH
Q 014132 291 AYEFVESMKKKGI--RVPGIGHRIKRGDNRDKR----VELLQKFARTHFPSVKYMEYAVQVETY 348 (430)
Q Consensus 291 ~~~~v~~~~~~~~--~ipGFGH~vy~~~~~DPR----a~~L~~~~~~~~~~~~~~~~a~~~e~~ 348 (430)
+++.|++..++|+ .+||.|-|+-...+ ||. ..++.+..+..+.-.|++++-.++++.
T Consensus 2 ~e~~I~~A~~~GeFdnLpG~GKPL~~~~~-~~~~~~~~~~~~~iLk~~g~lPp~i~l~kei~~l 64 (71)
T PF09350_consen 2 AERRIREAMARGEFDNLPGAGKPLPLDDD-NPYWPAEERMANRILKNAGYLPPWIELRKEIEEL 64 (71)
T ss_pred HHHHHHHHHHcCCccCCCCCCCCCCCCCC-CcCCCHHHHHHHHhhcccCCCCHHHHHHHHHHHH
Confidence 4567788888885 79999999885432 233 334555555445557888888877764
No 156
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=52.86 E-value=39 Score=32.89 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=34.4
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCC-----h-hHH---------H----H---HHHHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGG-----R-DEY---------S----L---VEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~-----~-~E~---------~----~---a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+||++++||+.|+... . .|. . . .+++. -...+||||+.+-|-..
T Consensus 37 l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 112 (262)
T PRK07468 37 LTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQGQAF 112 (262)
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEEECCEEE
Confidence 5666777888999999999998631 0 010 0 0 11111 12578999999988655
No 157
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=52.36 E-value=37 Score=33.40 Aligned_cols=53 Identities=30% Similarity=0.407 Sum_probs=34.4
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCCh------hH----------HHH-------HHHHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGGR------DE----------YSL-------VEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~~------~E----------~~~-------a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+||+.++||+.|+.... .+ .+. .+++. -...+||||+.+.|.+.
T Consensus 49 L~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~ 125 (277)
T PRK08258 49 LRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIAAVDGVCA 125 (277)
T ss_pred HHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeee
Confidence 56677777889999999999985310 00 001 11121 12478999999998765
No 158
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=52.06 E-value=30 Score=33.58 Aligned_cols=53 Identities=26% Similarity=0.342 Sum_probs=34.2
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCCh------hH--------HH-H-------HHHHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGGR------DE--------YS-L-------VEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~~------~E--------~~-~-------a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+||++++||+.|++... .| .+ . .+++. -...+||||+.+-|..-
T Consensus 38 l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 113 (260)
T PRK07827 38 LHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVR 113 (260)
T ss_pred HHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCeee
Confidence 55667777889999999999986310 01 00 1 11111 12478999999988765
No 159
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=51.97 E-value=23 Score=34.63 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.0
Q ss_pred CHHHHHHHhhcCCCccEEEEeecc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGEL 54 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~ 54 (430)
.+.++++.+.+||+.++||+.|++
T Consensus 37 ~L~~~l~~~~~d~~vr~vVl~g~g 60 (272)
T PRK06210 37 EVYAAMDRAEADPAVRVIVLTGAG 60 (272)
T ss_pred HHHHHHHHhccCCCeeEEEEECCC
Confidence 456677788889999999999986
No 160
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=51.90 E-value=22 Score=32.51 Aligned_cols=110 Identities=20% Similarity=0.327 Sum_probs=65.9
Q ss_pred HHHHHHhhcCCCccEEEEeeccCChhHHHHHHHHHc--CCCCCCEEEEecCCcccccccccc-ccccc-ccccCCcCcHH
Q 014132 33 SDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQ--GKVNKPVVAWVSGTCARLFKSEVQ-FGHAG-AKSGGEMESAQ 108 (430)
Q Consensus 33 ~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~a~~~~~--~~~~KPvv~~~~G~~~~~~p~g~~-~gHag-ai~~~~~g~~~ 108 (430)
.+-++.+...| .-|+++||.|.-.|. .++.+.. ....+|.|.+-.+...+.. .... +||.- +.. +...
T Consensus 12 ~~~~~~~a~~~--~pVlI~GE~GtGK~~-lA~~IH~~s~r~~~pfi~vnc~~~~~~~-~e~~LFG~~~~~~~----~~~~ 83 (168)
T PF00158_consen 12 REQAKRAASSD--LPVLITGETGTGKEL-LARAIHNNSPRKNGPFISVNCAALPEEL-LESELFGHEKGAFT----GARS 83 (168)
T ss_dssp HHHHHHHTTST--S-EEEECSTTSSHHH-HHHHHHHCSTTTTS-EEEEETTTS-HHH-HHHHHHEBCSSSST----TTSS
T ss_pred HHHHHHHhCCC--CCEEEEcCCCCcHHH-HHHHHHHhhhcccCCeEEEehhhhhcch-hhhhhhcccccccc----cccc
Confidence 34444455455 678999999885554 5666652 2356899998887655200 0111 67642 222 1111
Q ss_pred HHHHHHHH--CCCcccCChHHHHHHHHHHHHHHhhcCCCCCCCC
Q 014132 109 AKNQALRD--AGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKE 150 (430)
Q Consensus 109 ~k~~~l~~--~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e 150 (430)
.+...|.+ -|...-+++++|+..++..|-+..+.|.+.+..+
T Consensus 84 ~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~ 127 (168)
T PF00158_consen 84 DKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGS 127 (168)
T ss_dssp EBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTS
T ss_pred ccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccc
Confidence 23345544 4688899999999999988888888887777644
No 161
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=51.24 E-value=42 Score=33.35 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=19.3
Q ss_pred HHHHHHHhhcCCCccEEEEeeccC
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELG 55 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~ 55 (430)
+.++++.+.+||+.++||+.|.+.
T Consensus 36 L~~~l~~~~~d~~vrvvVltg~G~ 59 (288)
T PRK08290 36 LDAAFRRAEADDAVRVIVLAGAGK 59 (288)
T ss_pred HHHHHHHHhcCCCeeEEEEECCCC
Confidence 556677777899999999998763
No 162
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=50.88 E-value=38 Score=31.33 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=33.0
Q ss_pred CCHHHHHHHhhcCCCccEEEEe-eccCChhH--HHHHHHHHcCCCCCCEEEEec---CCcc
Q 014132 30 STLSDHILRFNNIPQVKMMVVL-GELGGRDE--YSLVEALKQGKVNKPVVAWVS---GTCA 84 (430)
Q Consensus 30 ~~~~d~l~~l~~Dp~T~~Ivl~-gE~~~~~E--~~~a~~~~~~~~~KPvv~~~~---G~~~ 84 (430)
..+.+.|+.+.+|+ .+.|++. .=+||.-. ++..+.+. ..+||||+++. |...
T Consensus 16 ~~l~~~l~~a~~~~-~~~vvl~InSpGG~v~~~~~i~~~l~--~~~kPvia~v~~~~G~Aa 73 (187)
T cd07020 16 DYLERAIDQAEEGG-ADALIIELDTPGGLLDSTREIVQAIL--ASPVPVVVYVYPSGARAA 73 (187)
T ss_pred HHHHHHHHHHHhCC-CCEEEEEEECCCCCHHHHHHHHHHHH--hCCCCEEEEEecCCCCch
Confidence 35678888888776 6777666 44555332 12223333 47899999997 6544
No 163
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=49.19 E-value=42 Score=32.58 Aligned_cols=52 Identities=19% Similarity=0.267 Sum_probs=33.6
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCCh-----------------hH--HHHHH----HHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGGR-----------------DE--YSLVE----ALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~~-----------------~E--~~~a~----~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+. ||++++||+.|++... .+ ....+ ++. -...+||||+.+-|..-
T Consensus 36 l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 111 (262)
T PRK08140 36 LREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAVNGVAA 111 (262)
T ss_pred HHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeee
Confidence 666777777 9999999999986320 00 01111 111 12478999999988765
No 164
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=48.88 E-value=23 Score=33.86 Aligned_cols=54 Identities=24% Similarity=0.270 Sum_probs=35.7
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccCChh------H------HHHHHHHH--------cCCCCCCEEEEecCCcc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELGGRD------E------YSLVEALK--------QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~------E------~~~a~~~~--------~~~~~KPvv~~~~G~~~ 84 (430)
.+.++|+.+.+|++.++|++.|+..... + +...++.+ -...+||+|+.+.|..-
T Consensus 29 ~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~ 102 (245)
T PF00378_consen 29 ELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNGHAV 102 (245)
T ss_dssp HHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESSEEE
T ss_pred HHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeeccccccc
Confidence 4678888999999999888877653221 1 12222222 12478999999988665
No 165
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=48.65 E-value=43 Score=35.17 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=34.3
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCC-----hh-H----------HHHHHHHH--------cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGG-----RD-E----------YSLVEALK--------QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~-----~~-E----------~~~a~~~~--------~~~~~KPvv~~~~G~~~ 84 (430)
+.++|+.+.+||+.++||+.|++.. .- | ....+|.+ -...+||+|+.+-|-.-
T Consensus 69 L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~ 145 (401)
T PLN02157 69 LQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTM 145 (401)
T ss_pred HHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCeEe
Confidence 3567788888999999999987631 00 1 10112211 12578999999988655
No 166
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=48.40 E-value=44 Score=32.34 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=34.3
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCCh-----h-H------HH-------H-HHHHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGGR-----D-E------YS-------L-VEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~~-----~-E------~~-------~-a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+||+.++||+.|++... - | .+ . ..|.. -...+||||+.+-|..-
T Consensus 31 l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 104 (255)
T PRK06563 31 LALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAVQGYCL 104 (255)
T ss_pred HHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEEcCeee
Confidence 56677777889999999999976310 0 0 00 0 11211 12478999999988765
No 167
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=48.36 E-value=48 Score=32.07 Aligned_cols=52 Identities=19% Similarity=0.293 Sum_probs=33.9
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCCh----------------hH--HHHHH----HHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGGR----------------DE--YSLVE----ALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~~----------------~E--~~~a~----~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+|+ .++||+.|+.... .+ ....+ +++ -...+||||+.+-|-.-
T Consensus 31 l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 105 (256)
T TIGR02280 31 LREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAA 105 (256)
T ss_pred HHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeee
Confidence 677778888899 9999999986321 01 00111 111 12478999999988655
No 168
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=48.27 E-value=45 Score=35.12 Aligned_cols=53 Identities=19% Similarity=0.203 Sum_probs=35.1
Q ss_pred HHHHHHHhhcCCCccEEEEeeccC-----Chh-H----------HHHHHHHH--------cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELG-----GRD-E----------YSLVEALK--------QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~-----~~~-E----------~~~a~~~~--------~~~~~KPvv~~~~G~~~ 84 (430)
+.++|+.+++||+.++|++.|++. +.- + +...+|.+ -...+||+|+.+-|.+-
T Consensus 74 L~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~am 150 (407)
T PLN02851 74 LKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKPNVAIMDGITM 150 (407)
T ss_pred HHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEe
Confidence 467777788899999999999752 110 0 12223322 12478999999988765
No 169
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=48.22 E-value=39 Score=36.52 Aligned_cols=109 Identities=17% Similarity=0.346 Sum_probs=64.4
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCChhHHHHHHHHH--cCCCCCCEEEEecCCcccccccc--cc-cccc-cccccCCcC
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALK--QGKVNKPVVAWVSGTCARLFKSE--VQ-FGHA-GAKSGGEME 105 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~a~~~~--~~~~~KPvv~~~~G~~~~~~p~g--~~-~gHa-gai~~~~~g 105 (430)
+.+-++.+...+. -|+++||.|.-.+. .++.+. .....+|.+.+-.....+ .. .. |||. |+.. +
T Consensus 216 ~~~~~~~~A~~~~--pvlI~GE~GtGK~~-lA~aiH~~s~r~~~pfv~inca~~~~---~~~e~elFG~~~~~~~----~ 285 (520)
T PRK10820 216 VVEQARKLAMLDA--PLLITGDTGTGKDL-LAYACHLRSPRGKKPFLALNCASIPD---DVVESELFGHAPGAYP----N 285 (520)
T ss_pred HHHHHHHHhCCCC--CEEEECCCCccHHH-HHHHHHHhCCCCCCCeEEeccccCCH---HHHHHHhcCCCCCCcC----C
Confidence 4444444444433 38999999885443 445553 223457977665544331 11 11 6665 2332 1
Q ss_pred cHHHHHHHHHH--CCCcccCChHHHHHHHHHHHHHHhhcCCCCCCCC
Q 014132 106 SAQAKNQALRD--AGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKE 150 (430)
Q Consensus 106 ~~~~k~~~l~~--~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e 150 (430)
....+...|++ .|....+++++|...+...+-+..+.|.|.+..+
T Consensus 286 ~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~ 332 (520)
T PRK10820 286 ALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGE 332 (520)
T ss_pred cccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCC
Confidence 11223445644 4788899999998888888877777787777644
No 170
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=48.13 E-value=47 Score=33.01 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=20.3
Q ss_pred CHHHHHHHhhcCCCccEEEEeecc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGEL 54 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~ 54 (430)
.+.++++.+.+||+.++||+.|+.
T Consensus 35 ~L~~al~~~~~d~~vr~vVltg~g 58 (296)
T PRK08260 35 ELIEAFDAADADDAVRAVIVTGAG 58 (296)
T ss_pred HHHHHHHHHhcCCCeEEEEEECCC
Confidence 367778888899999999999975
No 171
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=47.16 E-value=53 Score=32.28 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=34.6
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCCh------hH---------H----HH----HHHHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGGR------DE---------Y----SL----VEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~~------~E---------~----~~----a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+..||+.++||+.|+.... .| . +. .+++. -...+||||+.+.|..-
T Consensus 40 l~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 116 (275)
T PRK09120 40 MIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMVNGWCF 116 (275)
T ss_pred HHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEe
Confidence 56777777889999999999986310 01 0 00 11111 12478999999988765
No 172
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=46.51 E-value=53 Score=31.78 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=35.1
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccCC-----h-hH----------HH-------HHHHHH-cCCCCCCEEEEecCCcc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELGG-----R-DE----------YS-------LVEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~~-----~-~E----------~~-------~a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
.+.++++.+.+||+.++||+.|++.. . .| .+ ..+++. -...+||||+.+.|...
T Consensus 33 ~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 110 (255)
T PRK07260 33 EILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIMCVDGAVA 110 (255)
T ss_pred HHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEEEecCeee
Confidence 45677777888999999999998631 0 01 00 011111 12479999999999765
No 173
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=46.49 E-value=55 Score=31.52 Aligned_cols=52 Identities=19% Similarity=0.274 Sum_probs=30.6
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCC-----h-----hHHH----HHHHHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGG-----R-----DEYS----LVEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~-----~-----~E~~----~a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+ ++.++||+.|++.. . .... ..++++ -...+||+|+.+.|..-
T Consensus 32 l~~al~~~~~-~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~ 98 (243)
T PRK07854 32 LREAVRKAVD-ESARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAI 98 (243)
T ss_pred HHHHHHHHhc-CCceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCccc
Confidence 4455555554 48999999998631 0 0001 111221 11478999999988655
No 174
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=46.30 E-value=46 Score=33.96 Aligned_cols=53 Identities=13% Similarity=0.153 Sum_probs=34.5
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCC------hh-HH---------HHH-HHH-------H-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGG------RD-EY---------SLV-EAL-------K-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~------~~-E~---------~~a-~~~-------~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+..||+.++||+.|+.++ .- |. ... ++. . -...+||||+.+.|..-
T Consensus 35 L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~ 112 (342)
T PRK05617 35 IDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGIVM 112 (342)
T ss_pred HHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEE
Confidence 5666777788999999999998731 10 10 000 111 1 12478999999999765
No 175
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=45.97 E-value=37 Score=32.87 Aligned_cols=84 Identities=26% Similarity=0.418 Sum_probs=53.5
Q ss_pred cCCCCHHHHHHHhhc---CCCccEEEEeec--c------CChh-----------H--------HHHHHHHHcCCCCCCEE
Q 014132 27 FPGSTLSDHILRFNN---IPQVKMMVVLGE--L------GGRD-----------E--------YSLVEALKQGKVNKPVV 76 (430)
Q Consensus 27 i~g~~~~d~l~~l~~---Dp~T~~Ivl~gE--~------~~~~-----------E--------~~~a~~~~~~~~~KPvv 76 (430)
+.-.|..|.++.|.+ |++.-+|++.|- . ||.. | .+.+++|+ -.+||||
T Consensus 43 frP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~rLnvLdlQrlIR--~~PKpVi 120 (282)
T COG0447 43 FRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRLIR--TMPKPVI 120 (282)
T ss_pred CCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcccchhhHHHHHH--hCCcceE
Confidence 344667777776654 999999999964 1 1111 1 34466776 5899999
Q ss_pred EEecCCcccccccccccccccccccCCcCcHHHHHHHHHHCCCcc
Q 014132 77 AWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVV 121 (430)
Q Consensus 77 ~~~~G~~~~~~p~g~~~gHagai~~~~~g~~~~k~~~l~~~Gv~~ 121 (430)
+.++|-.. -| ||.--++.. -+-++-.+.|.|.|-.|
T Consensus 121 A~V~G~Ai----GG---GhvlhvvCD--LTiAa~nA~FgQTgp~V 156 (282)
T COG0447 121 AMVAGYAI----GG---GHVLHVVCD--LTIAADNAIFGQTGPKV 156 (282)
T ss_pred EEEeeEec----cC---ccEEEEEee--eeeehhcchhcCCCCCc
Confidence 99999766 23 355444432 34444567888888444
No 176
>PLN03085 nucleobase:cation symporter-1; Provisional
Probab=44.62 E-value=1.3e+02 Score=28.93 Aligned_cols=59 Identities=14% Similarity=0.193 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCC--CCCCCCCCCCCCCCC--cHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 014132 291 AYEFVESMKKKGI--RVPGIGHRIKRGDNR--DKRVELLQKFARTHFPSVKYMEYAVQVETYT 349 (430)
Q Consensus 291 ~~~~v~~~~~~~~--~ipGFGH~vy~~~~~--DPRa~~L~~~~~~~~~~~~~~~~a~~~e~~~ 349 (430)
+++-|++.+++|+ .+||.|.|+-..+++ ||=...+-.+.+..+.-.+++++-.++.+.+
T Consensus 93 aE~rI~eAm~~GeFdNLpG~GKPL~ldd~p~vp~e~r~~nRILknaG~lPpwIeL~KEI~~~i 155 (221)
T PLN03085 93 VEQRIWHSMEEGHFENLPGKGKPLNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRGQI 155 (221)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 4455666677885 899999999643222 2334456677777777788998888777665
No 177
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=44.59 E-value=50 Score=30.52 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=34.2
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCChhHHHH---HHHHHcCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGGRDEYSL---VEALKQGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~---a~~~~~~~~~KPvv~~~~G~~~ 84 (430)
+.+.|+...+++ .+.|++....||-.-... .+.++ ..+|||++++.|...
T Consensus 18 l~~~l~~a~~~~-~~~ivl~inspGG~v~~~~~I~~~l~--~~~~pvva~V~g~Aa 70 (178)
T cd07021 18 VERALKEAKEEG-ADAVVLDIDTPGGRVDSALEIVDLIL--NSPIPTIAYVNDRAA 70 (178)
T ss_pred HHHHHHHHHhCC-CCeEEEEEECcCCCHHHHHHHHHHHH--hCCCCEEEEECCchH
Confidence 455666667777 788888877777553233 44444 467999999988766
No 178
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=44.50 E-value=34 Score=35.50 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=34.3
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCC-----hh-H--------HHHHHH-------H-HcCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGG-----RD-E--------YSLVEA-------L-KQGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~-----~~-E--------~~~a~~-------~-~~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+||+.++||+.|++.. .- | ....++ + +-...+||||+.+-|-..
T Consensus 43 L~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~ 117 (379)
T PLN02874 43 LAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVM 117 (379)
T ss_pred HHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEE
Confidence 4677777788999999999997632 00 1 011111 1 112478999999998765
No 179
>PF08503 DapH_N: Tetrahydrodipicolinate succinyltransferase N-terminal; InterPro: IPR013710 This domain is found at the N terminus of tetrahydrodipicolinate N-acetyltransferase (DapH) which catalyses the acylation of L-2-amino-6-oxopimelate to 2-N-acetyl-6-oxopimelate in the meso-diaminopimelate/lysine biosynthetic pathway of bacteria, blue-green algae, and plants []. The N-terminal domain as defined here contains three alpha-helices and two twisted hairpin loops []. ; GO: 0047200 tetrahydrodipicolinate N-acetyltransferase activity; PDB: 3CJ8_A 3BV8_A 3R8Y_F.
Probab=44.43 E-value=44 Score=27.29 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCcccccccccc---cccccccccCCcCcHHHHHHHHHHC
Q 014132 60 YSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQ---FGHAGAKSGGEMESAQAKNQALRDA 117 (430)
Q Consensus 60 ~~~a~~~~~~~~~KPvv~~~~G~~~~~~p~g~~---~gHagai~~~~~g~~~~k~~~l~~~ 117 (430)
++..+||+.++.+.||-+|+.|.-+..-..+.+ -++.|.++ |+.+.-..+|++.
T Consensus 4 ~eII~~I~~skKkTPVKvYv~G~l~~~~~~~~~~fg~~~~~vvf----Gd~~~i~~~Le~~ 60 (83)
T PF08503_consen 4 EEIIRYIKNSKKKTPVKVYVKGDLAGIDFEDVKVFGSGNFGVVF----GDWDEIKPFLEAN 60 (83)
T ss_dssp HHHHHHHHHCTTB-EEEEEEEESCTC---TTSEEEEESSEEEEE----EEHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCEEEEEeeeecCCChhheEEEeCCCcEEEE----ecHHHHHHHHHhc
Confidence 356899997777789999999985421012333 44677777 7888777777653
No 180
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=43.44 E-value=41 Score=32.64 Aligned_cols=54 Identities=26% Similarity=0.335 Sum_probs=34.3
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccCC-----h-hH------HHHH-----H-HHHcCCCCCCEEEEecCCcc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELGG-----R-DE------YSLV-----E-ALKQGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~~-----~-~E------~~~a-----~-~~~~~~~~KPvv~~~~G~~~ 84 (430)
.+.++++.+++||++++||+.|+... . .| .+.. . +......+||||+.+.|-..
T Consensus 34 ~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~ 105 (254)
T PRK08259 34 ALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGYAV 105 (254)
T ss_pred HHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEECCEEE
Confidence 36677778888999999999997521 0 01 0000 0 11112468999999988665
No 181
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=41.97 E-value=73 Score=30.98 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=32.7
Q ss_pred HHHHHHHhhcCC-CccEEEEeeccCCh------hHH-----------H-H-------HHHHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIP-QVKMMVVLGELGGR------DEY-----------S-L-------VEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp-~T~~Ivl~gE~~~~------~E~-----------~-~-------a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+.+|+ ++++||+.|+.... .|. + . .+++. -...+||||+.+.|.+-
T Consensus 36 l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~ 115 (266)
T PRK05981 36 LAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAA 115 (266)
T ss_pred HHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEee
Confidence 456666677776 49999999986321 010 0 1 11111 12579999999988765
No 182
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=41.17 E-value=53 Score=29.72 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=39.1
Q ss_pred CCCHHHHHHHhhcCCCccEEEEeeccCChhHHHH---HHHHHcCCCCCCEEEEecCCcc
Q 014132 29 GSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL---VEALKQGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 29 g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~---a~~~~~~~~~KPvv~~~~G~~~ 84 (430)
...|.+.|.++.+++.++.|+++.-.||-.-..+ -+.++ ..++||++++.|..+
T Consensus 14 ~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~--~~~~~v~~~~~g~aa 70 (162)
T cd07013 14 ANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIK--FIKADVVTIIDGLAA 70 (162)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHH--hcCCCceEEEEeehh
Confidence 3567788889999999999988877666443222 44455 467899999988766
No 183
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=39.56 E-value=72 Score=33.22 Aligned_cols=53 Identities=21% Similarity=0.267 Sum_probs=34.7
Q ss_pred HHHHHHHhhcCCCccEEEEeeccC-----Chh-HH----------HHHHHHH--------cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELG-----GRD-EY----------SLVEALK--------QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~-----~~~-E~----------~~a~~~~--------~~~~~KPvv~~~~G~~~ 84 (430)
+.++|+.+.+||+.++||+.|++. +.- +. ...+|.+ -...+||+|+.+-|-+-
T Consensus 41 L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~ 117 (381)
T PLN02988 41 LLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVM 117 (381)
T ss_pred HHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHCCCCEEEEecCeEe
Confidence 367788888899999999999862 111 10 0011111 12479999999988765
No 184
>PRK10203 hypothetical protein; Provisional
Probab=39.41 E-value=1.8e+02 Score=25.44 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCC--CCCCCCCCCCCCCCC-cH-HHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014132 291 AYEFVESMKKKGI--RVPGIGHRIKRGDNR-DK-RVELLQKFARTHFPSVKYMEYAVQVET 347 (430)
Q Consensus 291 ~~~~v~~~~~~~~--~ipGFGH~vy~~~~~-DP-Ra~~L~~~~~~~~~~~~~~~~a~~~e~ 347 (430)
+++.|++..++|+ .+||.|.|+-..+++ +| =......+.+..+.-.+++++-.+++.
T Consensus 8 ~E~~I~eA~~~GefdnLpG~GKPL~~~d~~~~p~e~r~~~rilknag~lP~el~LrKE~~~ 68 (122)
T PRK10203 8 AERHILEAQRKGEFDNLPGSGEPLILDDDSHVPPELRAGYRLLKNAGCLPPELEQRREAIQ 68 (122)
T ss_pred HHHHHHHHHHcCCccCCCCCCCCCCCccCCCCCHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 4667777888885 899999999653221 12 112223344444555667766665553
No 185
>PRK08788 enoyl-CoA hydratase; Validated
Probab=39.40 E-value=64 Score=32.19 Aligned_cols=23 Identities=9% Similarity=0.081 Sum_probs=18.6
Q ss_pred HHHHHHHhhc-----CCCccEEEEeecc
Q 014132 32 LSDHILRFNN-----IPQVKMMVVLGEL 54 (430)
Q Consensus 32 ~~d~l~~l~~-----Dp~T~~Ivl~gE~ 54 (430)
+.++++.+++ ||+.++||+.|+.
T Consensus 48 L~~al~~~~~~~~~~d~~vrvVVltg~~ 75 (287)
T PRK08788 48 IMNLQRAIRQRLDDSGLPVDFWVLASDV 75 (287)
T ss_pred HHHHHHHHHhhccCCCCCeEEEEEEcCC
Confidence 5566777777 8999999999984
No 186
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=38.93 E-value=1.1e+02 Score=25.74 Aligned_cols=85 Identities=19% Similarity=0.219 Sum_probs=50.1
Q ss_pred HHHHHhhcCCCccEEEEeeccCChhHHHHHHHHHcCCCCCCEEEEecCCcccccccccccccccccccCCcCcHHHHHHH
Q 014132 34 DHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQA 113 (430)
Q Consensus 34 d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~a~~~~~~~~~KPvv~~~~G~~~~~~p~g~~~gHagai~~~~~g~~~~k~~~ 113 (430)
...-.+.+|-+.++|+++.+.|. .++++...+.+.||+++-.-... -+ ..
T Consensus 6 ~aa~~~A~~~~ak~Ivv~T~sG~-----ta~~isk~RP~~pIiavt~~~~~-----~r--------------------~l 55 (117)
T PF02887_consen 6 RAAVELAEDLNAKAIVVFTESGR-----TARLISKYRPKVPIIAVTPNESV-----AR--------------------QL 55 (117)
T ss_dssp HHHHHHHHHHTESEEEEE-SSSH-----HHHHHHHT-TSSEEEEEESSHHH-----HH--------------------HG
T ss_pred HHHHHHHHhcCCCEEEEECCCch-----HHHHHHhhCCCCeEEEEcCcHHH-----Hh--------------------hh
Confidence 33445667778999999999887 45566544567899998532111 01 11
Q ss_pred HHHCCCc--ccCChH-HHHHHHHHHHHHHhhcCCCCCC
Q 014132 114 LRDAGAV--VPTSYE-AFESAIKETFEKLVEEGKIPPV 148 (430)
Q Consensus 114 l~~~Gv~--~~~~~~-~l~~~~~~~~~~~~~~g~~~~~ 148 (430)
-.--|+. ..+... +..+.++.+++.+.+.|++.+-
T Consensus 56 ~l~~GV~p~~~~~~~~~~~~~~~~a~~~~~~~g~~~~g 93 (117)
T PF02887_consen 56 SLYWGVYPVLIEEFDKDTEELIAEALEYAKERGLLKPG 93 (117)
T ss_dssp GGSTTEEEEECSSHSHSHHHHHHHHHHHHHHTTSS-TT
T ss_pred hcccceEEEEeccccccHHHHHHHHHHHHHHcCCCCCC
Confidence 1113322 233333 5677777888888888987775
No 187
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=36.46 E-value=1.4e+02 Score=25.34 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=39.7
Q ss_pred CCCHHHHHHHhhcCCCccEEEEeeccCChhHHHHHHHHH---cCCCCCCEEEEecCCcc
Q 014132 29 GSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALK---QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 29 g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~a~~~~---~~~~~KPvv~~~~G~~~ 84 (430)
-.+..|++..+.++++..+|++.-+ +..+....++++ .+..+-||..+.--.+.
T Consensus 23 ~~~~dd~~~~i~~~~~i~avvi~~d--~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~~ 79 (115)
T PF03709_consen 23 ADSTDDALAIIESFTDIAAVVISWD--GEEEDEAQELLDKIRERNFGIPVFLLAERDTT 79 (115)
T ss_dssp ESSHHHHHHHHHCTTTEEEEEEECH--HHHHHHHHHHHHHHHHHSTT-EEEEEESCCHH
T ss_pred eCChHHHHHHHHhCCCeeEEEEEcc--cccchhHHHHHHHHHHhCCCCCEEEEecCCCc
Confidence 4788999999999999999999988 333444455544 55678899999764433
No 188
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=35.31 E-value=69 Score=36.15 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=34.2
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCCh---------------hHHHHHHH-------HH-cCCCCCCEEEEecCCc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGGR---------------DEYSLVEA-------LK-QGKVNKPVVAWVSGTC 83 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~~---------------~E~~~a~~-------~~-~~~~~KPvv~~~~G~~ 83 (430)
+.++++.+.+||+.++||+.|+.... .+....++ +. -...+||||+.+.|-.
T Consensus 39 L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a 113 (715)
T PRK11730 39 LGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAINGYA 113 (715)
T ss_pred HHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCEe
Confidence 46777778889999999999986310 01111112 11 1247899999999865
No 189
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=34.93 E-value=98 Score=30.06 Aligned_cols=74 Identities=14% Similarity=0.014 Sum_probs=47.4
Q ss_pred hHHHHHHHHhcCCCeeEEEEecCC---ccCCCCHHHHHHHhh--cCCCccEEEEeeccCChhHHHHHHHHHcCCCCCCEE
Q 014132 2 SNELYNTIARVTDGIYEGIAIGGD---VFPGSTLSDHILRFN--NIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVV 76 (430)
Q Consensus 2 ~~ei~~~~~~~g~G~S~~i~~Ggd---~i~g~~~~d~l~~l~--~Dp~T~~Ivl~gE~~~~~E~~~a~~~~~~~~~KPvv 76 (430)
++.+...+.+.|+-+....|.|-+ .|..++-.+..+... ++|+.++|++.+-.....+ ..+-+++ ..+|||+
T Consensus 134 ~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTnLrt~~--vi~~lE~-~lGkPVl 210 (239)
T TIGR02990 134 SRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCTALRAAT--CAQRIEQ-AIGKPVV 210 (239)
T ss_pred HHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCCCchhHH--HHHHHHH-HHCCCEE
Confidence 456677888899888776665552 344555555555443 3889999999987666433 2333332 4789998
Q ss_pred EE
Q 014132 77 AW 78 (430)
Q Consensus 77 ~~ 78 (430)
.-
T Consensus 211 sS 212 (239)
T TIGR02990 211 TS 212 (239)
T ss_pred EH
Confidence 53
No 190
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=34.67 E-value=76 Score=30.82 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=32.0
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCC-----h-hH-------HHHHHHH-------H-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGG-----R-DE-------YSLVEAL-------K-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~-----~-~E-------~~~a~~~-------~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+ +||+.++||+.|++.. . .| .+..++. . -...+||||+.+-|...
T Consensus 38 l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~ 110 (260)
T PRK07659 38 LLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIHGPAA 110 (260)
T ss_pred HHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCcee
Confidence 45566666 5899999999988632 0 01 0111111 1 11468999999988765
No 191
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=33.62 E-value=53 Score=34.53 Aligned_cols=117 Identities=17% Similarity=0.248 Sum_probs=75.0
Q ss_pred CHHHHHHHhhcCC-CccEEEEeeccCChhHHHHHHHHH-cCC-CCCCEEEEecCCcccccccccc-cccc-cccccCCcC
Q 014132 31 TLSDHILRFNNIP-QVKMMVVLGELGGRDEYSLVEALK-QGK-VNKPVVAWVSGTCARLFKSEVQ-FGHA-GAKSGGEME 105 (430)
Q Consensus 31 ~~~d~l~~l~~Dp-~T~~Ivl~gE~~~~~E~~~a~~~~-~~~-~~KPvv~~~~G~~~~~~p~g~~-~gHa-gai~~~~~g 105 (430)
++.+.++-....+ .-+-|+++||.|.-.|.-+...-+ +.+ ...|.|++=.+..++. |.... |||. ||.. |
T Consensus 86 ~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en-~~~~eLFG~~kGaft----G 160 (403)
T COG1221 86 SLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSEN-LQEAELFGHEKGAFT----G 160 (403)
T ss_pred HHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcC-HHHHHHhccccceee----c
Confidence 4666666665554 445678889998866654433222 223 5799999999987741 23333 8875 4444 3
Q ss_pred cHHHHHHHHHHCC--CcccCChHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 014132 106 SAQAKNQALRDAG--AVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVT 152 (430)
Q Consensus 106 ~~~~k~~~l~~~G--v~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e~~ 152 (430)
....|...|++++ .-.-|.+.+|+--....+=+.-+.|-+.|..+..
T Consensus 161 a~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~ 209 (403)
T COG1221 161 AQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQ 209 (403)
T ss_pred ccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCC
Confidence 3344566776554 5566777777777777666667889999886643
No 192
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=33.05 E-value=1e+02 Score=29.56 Aligned_cols=54 Identities=11% Similarity=0.051 Sum_probs=31.5
Q ss_pred CHHHHHHHhhcCCCcc-EEEEeeccCC-----hh-H--------HHHHHH-------HH-cCCCCCCEEEEecCCcc
Q 014132 31 TLSDHILRFNNIPQVK-MMVVLGELGG-----RD-E--------YSLVEA-------LK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~-~Ivl~gE~~~-----~~-E--------~~~a~~-------~~-~~~~~KPvv~~~~G~~~ 84 (430)
.+.++++.+.+||+++ +||+.|++.. .- | .+..++ +. -...+||||+.+.|..-
T Consensus 30 eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~ 106 (239)
T PLN02267 30 SIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVTGHAS 106 (239)
T ss_pred HHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCcch
Confidence 3566777777888875 6666676411 10 1 011111 11 12478999999988765
No 193
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=32.70 E-value=78 Score=35.76 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=34.4
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccCCh---------------hHHHH-------HHHHH-cCCCCCCEEEEecCCc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELGGR---------------DEYSL-------VEALK-QGKVNKPVVAWVSGTC 83 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~~~---------------~E~~~-------a~~~~-~~~~~KPvv~~~~G~~ 83 (430)
.+.++++.+.+||+.++||+.|+.... .+.+. .+++. -...+||||+.+-|.+
T Consensus 38 eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvIAai~G~a 113 (714)
T TIGR02437 38 SLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVAAINGIA 113 (714)
T ss_pred HHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 356677777889999999999975310 01111 12222 1257899999999974
No 194
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=31.85 E-value=2.5e+02 Score=29.19 Aligned_cols=110 Identities=27% Similarity=0.300 Sum_probs=0.0
Q ss_pred EEEecCCccCCCC--HHHHHHHhhcCCCccEE-----EEeeccCChhHHHHHHHHHcCCCCCCEEEEecCCccccccccc
Q 014132 19 GIAIGGDVFPGST--LSDHILRFNNIPQVKMM-----VVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEV 91 (430)
Q Consensus 19 ~i~~Ggd~i~g~~--~~d~l~~l~~Dp~T~~I-----vl~gE~~~~~E~~~a~~~~~~~~~KPvv~~~~G~~~~~~p~g~ 91 (430)
+|=+|||++...+ +...+..|.+=|..+.| +.+--+-+-. .+..++++ +..|||...-
T Consensus 162 VllSGGDPL~ls~~~L~~ll~~L~~IpHv~iiRi~TR~pvv~P~RIt-~~L~~~l~--~~~~~v~~~t------------ 226 (369)
T COG1509 162 VLLSGGDPLSLSDKKLEWLLKRLRAIPHVKIIRIGTRLPVVLPQRIT-DELCEILG--KSRKPVWLVT------------ 226 (369)
T ss_pred EEecCCCccccCHHHHHHHHHHHhcCCceeEEEeecccceechhhcc-HHHHHHHh--ccCceEEEEc------------
Q ss_pred ccccccccccCCcCcHHHHHHHHHHCCCccc------CChHHHHHHHHHHHHHHhhcCCCCC
Q 014132 92 QFGHAGAKSGGEMESAQAKNQALRDAGAVVP------TSYEAFESAIKETFEKLVEEGKIPP 147 (430)
Q Consensus 92 ~~gHagai~~~~~g~~~~k~~~l~~~Gv~~~------~~~~~l~~~~~~~~~~~~~~g~~~~ 147 (430)
.+-|+-=|- ..+....+.|+++|+++. +..++=++++++.+++|++.|.-.+
T Consensus 227 H~NHp~Eit----~e~~~A~~~L~~aGv~l~NQsVLLrGVND~~evl~~L~~~L~~~gV~PY 284 (369)
T COG1509 227 HFNHPNEIT----PEAREACAKLRDAGVPLLNQSVLLRGVNDDPEVLKELSRALFDAGVKPY 284 (369)
T ss_pred ccCChhhcC----HHHHHHHHHHHHcCceeecchheecccCCCHHHHHHHHHHHHHcCCcce
No 195
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=31.63 E-value=82 Score=28.04 Aligned_cols=50 Identities=20% Similarity=0.200 Sum_probs=31.4
Q ss_pred CCHHHHHHHhhcCCCccEEEEeeccCChhHHHH---HHHHHcCCCCCCEEEEecCCcc
Q 014132 30 STLSDHILRFNNIPQVKMMVVLGELGGRDEYSL---VEALKQGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 30 ~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~---a~~~~~~~~~KPvv~~~~G~~~ 84 (430)
..+.+.|+.+.+| +.|.++.-.||-.-..+ .+.++ ..+|||++++.|...
T Consensus 18 ~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~--~~~~pvi~~v~g~a~ 70 (160)
T cd07016 18 KEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALK--RHKGKVTVKIDGLAA 70 (160)
T ss_pred HHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHH--hcCCCEEEEEcchHH
Confidence 3455555555555 77877766666443233 33344 468999999988655
No 196
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.58 E-value=1.2e+02 Score=32.05 Aligned_cols=66 Identities=20% Similarity=0.314 Sum_probs=40.1
Q ss_pred hcCCCeeEEEEecCCccCCCCHHHHHHHhh--cCCCccEEEEeeccCChhHHHHHHHHH----cCCCCCCEEEEecCCcc
Q 014132 11 RVTDGIYEGIAIGGDVFPGSTLSDHILRFN--NIPQVKMMVVLGELGGRDEYSLVEALK----QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 11 ~~g~G~S~~i~~Ggd~i~g~~~~d~l~~l~--~Dp~T~~Ivl~gE~~~~~E~~~a~~~~----~~~~~KPvv~~~~G~~~ 84 (430)
..|.||-..|=-|.-. |.| -.|-.+. .+-++.+|.|+||-|+ ++.|||+ +.+.+|=||..-.....
T Consensus 159 T~G~GQRiGIFAgsGV--GKS--tLLgMiar~t~aDv~ViaLIGERGR----EVrEFIE~~Lg~egl~rsViVvATSD~s 230 (441)
T COG1157 159 TCGKGQRIGIFAGSGV--GKS--TLLGMIARNTEADVNVIALIGERGR----EVREFIEKDLGEEGLKRSVVVVATSDES 230 (441)
T ss_pred ccccCceeEEEecCCC--cHH--HHHHHHhccccCCEEEEEEeeccch----hHHHHHHHhcchhhccceEEEEECCCCC
Confidence 3455655444333322 333 3444444 4556788899999999 8999998 22366777776544433
No 197
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=27.70 E-value=3.8e+02 Score=26.87 Aligned_cols=105 Identities=10% Similarity=0.012 Sum_probs=58.9
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccC-Chh--HHHHHHHHHcCCCCCCEEEEecCCcccccccccc---------cccccc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELG-GRD--EYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQ---------FGHAGA 98 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~-~~~--E~~~a~~~~~~~~~KPvv~~~~G~~~~~~p~g~~---------~gHaga 98 (430)
+..++++.+.+.++.+.|.++...+ |.- -++.++.++ +...|+.+|+-...-. .|.- |+-.+.
T Consensus 76 dse~v~raI~~~~~~~~IdLii~TpGG~v~AA~~I~~~l~--~~~~~v~v~VP~~A~S---AGTlIALaADeIvM~p~a~ 150 (285)
T PF01972_consen 76 DSEFVLRAIREAPKDKPIDLIIHTPGGLVDAAEQIARALR--EHPAKVTVIVPHYAMS---AGTLIALAADEIVMGPGAV 150 (285)
T ss_pred hHHHHHHHHHhcCCCCceEEEEECCCCcHHHHHHHHHHHH--hCCCCEEEEECccccc---HHHHHHHhCCeEEECCCCc
Confidence 4556777887777777776655444 432 244566776 4678999998654331 1111 222221
Q ss_pred cccC--C--cCcHHHHHHHHHHCCCcccCC-hHHHHHHHHHHHHHHh
Q 014132 99 KSGG--E--MESAQAKNQALRDAGAVVPTS-YEAFESAIKETFEKLV 140 (430)
Q Consensus 99 i~~~--~--~g~~~~k~~~l~~~Gv~~~~~-~~~l~~~~~~~~~~~~ 140 (430)
+-.- + ...+.+..+++++.+...+++ .--+.|.++|++++..
T Consensus 151 LGpiDPqi~~~pA~sil~~~~~K~~~~i~D~tlIladia~KAi~q~~ 197 (285)
T PF01972_consen 151 LGPIDPQIGQYPAASILKAVEQKPPDEIDDQTLILADIAEKAIRQVR 197 (285)
T ss_pred cCCCCccccCCChHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHH
Confidence 1100 0 145667888888888554443 2234667777766543
No 198
>KOG2617 consensus Citrate synthase [Energy production and conversion]
Probab=26.81 E-value=3.1e+02 Score=29.00 Aligned_cols=58 Identities=12% Similarity=0.071 Sum_probs=42.6
Q ss_pred HHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCcchhHHHHhhccCCC--hHHHHHHhhhcc
Q 014132 204 VGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKD--LVSSLVSGLLTI 266 (430)
Q Consensus 204 ~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aSt~a~--~~~av~Agl~a~ 266 (430)
....+|+|++|.-|+..|+..+..-|.-.+ ..+. ++-++.-|-..| |-+.+++|++++
T Consensus 108 pe~~~wLL~tG~vPt~~Q~~~~~~~~a~rs----~vP~-~v~~~idsmP~d~HPM~q~~~a~~al 167 (458)
T KOG2617|consen 108 PEELFWLLLTGNVPTQSQVAALSFELAQRS----AVPQ-GVLDMIDSMPKDLHPMAQLAAAVLAL 167 (458)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHhc----cccH-HHHHHHHhCCcccchHHHHHHHHHhc
Confidence 678888888999999999988888766543 3455 677777776654 456667777776
No 199
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=25.70 E-value=3.4e+02 Score=26.10 Aligned_cols=109 Identities=9% Similarity=0.085 Sum_probs=60.2
Q ss_pred CCCHHHHHHHhhcCCCccEEEEeeccCChhHHHHHHHHHcCCCCCCEEEEecCCcccccccccccccc--cc-----ccc
Q 014132 29 GSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHA--GA-----KSG 101 (430)
Q Consensus 29 g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~a~~~~~~~~~KPvv~~~~G~~~~~~p~g~~~gHa--ga-----i~~ 101 (430)
|..+.-++-.....|+-++|++.|.+.- ...-..|+..+.+.+-||+.++.--..=.+-.+.+...+ +. ..+
T Consensus 65 G~GlpaAiGa~~a~p~r~VV~i~GDG~~-~~m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g 143 (235)
T cd03376 65 ASGIEAALKALGRGKDITVVAFAGDGGT-ADIGFQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVG 143 (235)
T ss_pred HHHHHHHHHHhccCCCCeEEEEEcCchH-HhhHHHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCC
Confidence 5556666666677899999999999662 122234443322456787777654333000001111111 10 000
Q ss_pred C----CcCcHHHHHHHHHHCCCc-----ccCChHHHHHHHHHHHHH
Q 014132 102 G----EMESAQAKNQALRDAGAV-----VPTSYEAFESAIKETFEK 138 (430)
Q Consensus 102 ~----~~g~~~~k~~~l~~~Gv~-----~~~~~~~l~~~~~~~~~~ 138 (430)
. .....-...+..+..|+. ++++++|+.+.++++++.
T Consensus 144 ~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~~ 189 (235)
T cd03376 144 KVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALSI 189 (235)
T ss_pred ccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHhC
Confidence 0 000112355677888875 589999999999998874
No 200
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=24.38 E-value=66 Score=31.43 Aligned_cols=23 Identities=9% Similarity=0.339 Sum_probs=21.1
Q ss_pred CHHHHHHHhhcCCCccEEEEeec
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGE 53 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE 53 (430)
.|.+|++-+.+||+.++|++-||
T Consensus 53 E~~~cf~~l~~dpdcr~iilsg~ 75 (292)
T KOG1681|consen 53 EFKECFDSLDRDPDCRAIILSGA 75 (292)
T ss_pred HHHHHHHhhccCCCceEEEEecC
Confidence 47889999999999999999998
No 201
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=24.22 E-value=1.6e+02 Score=32.27 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=18.8
Q ss_pred CHHHHHHHhh-cCCCccEEEEeecc
Q 014132 31 TLSDHILRFN-NIPQVKMMVVLGEL 54 (430)
Q Consensus 31 ~~~d~l~~l~-~Dp~T~~Ivl~gE~ 54 (430)
.+.++++.+. +||..++|++.|+.
T Consensus 52 eL~~al~~~~~~d~~vRvVVLtg~~ 76 (546)
T TIGR03222 52 ELHDAVQRIRFEHPEVRTVVMTSGK 76 (546)
T ss_pred HHHHHHHHHHhcCCCeeEEEEecCC
Confidence 3566777777 78999999999764
No 202
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=24.06 E-value=7.1e+02 Score=24.63 Aligned_cols=129 Identities=9% Similarity=0.100 Sum_probs=68.0
Q ss_pred HHHHHHHhcCCCeeEEEEecCCcc-------------------------CCCCHHHHHH----HhhcC---CCc----cE
Q 014132 4 ELYNTIARVTDGIYEGIAIGGDVF-------------------------PGSTLSDHIL----RFNNI---PQV----KM 47 (430)
Q Consensus 4 ei~~~~~~~g~G~S~~i~~Ggd~i-------------------------~g~~~~d~l~----~l~~D---p~T----~~ 47 (430)
.+.+.++++..|.=.+++-|+++. .||++..+|+ +|.+. +.. ++
T Consensus 88 lIs~al~~Le~g~vgVv~Fg~~~~~v~Plt~d~~~~a~~~~l~~~~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~ql 167 (266)
T cd01460 88 LVSKALTLLEVGQLGVCSFGEDVQILHPFDEQFSSQSGPRILNQFTFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQL 167 (266)
T ss_pred HHHHHHHhCcCCcEEEEEeCCCceEeCCCCCCchhhHHHHHhCcccCCCCCCcHHHHHHHHHHHHHhhhccccccccccE
Confidence 456666777777666666676543 4566666554 44333 222 78
Q ss_pred EEEeeccCChh-HHHHHHHHHcCCCCCCEEEEecCCccccccccc-c---cccccccccCCcCcHHHHHHHHHHCCCc--
Q 014132 48 MVVLGELGGRD-EYSLVEALKQGKVNKPVVAWVSGTCARLFKSEV-Q---FGHAGAKSGGEMESAQAKNQALRDAGAV-- 120 (430)
Q Consensus 48 Ivl~gE~~~~~-E~~~a~~~~~~~~~KPvv~~~~G~~~~~~p~g~-~---~gHagai~~~~~g~~~~k~~~l~~~Gv~-- 120 (430)
|++++-+.+.. |......++. ...+.|..++.+... |.+. . |..+. ... +.......-|...+++
T Consensus 168 ilLISDG~~~~~e~~~~~~~r~-a~e~~i~l~~I~ld~---~~~~~SI~d~~~~~--~~~--~~~~~l~~Yl~~fpfpYy 239 (266)
T cd01460 168 LLIISDGRGEFSEGAQKVRLRE-AREQNVFVVFIIIDN---PDNKQSILDIKVVS--FKN--DKSGVITPYLDEFPFPYY 239 (266)
T ss_pred EEEEECCCcccCccHHHHHHHH-HHHcCCeEEEEEEcC---CCCCCCcccccccc--cCC--CCccHHHHHHhcCCCCeE
Confidence 88887655322 1111111221 012344444455444 1111 1 11111 100 1111355677888865
Q ss_pred -ccCChHHHHHHHHHHHHHHh
Q 014132 121 -VPTSYEAFESAIKETFEKLV 140 (430)
Q Consensus 121 -~~~~~~~l~~~~~~~~~~~~ 140 (430)
++.++++|+.++..++++-+
T Consensus 240 ~~~~~~~~lp~~l~~~lrqwf 260 (266)
T cd01460 240 VIVRDLNQLPSVLSDALRQWF 260 (266)
T ss_pred EEecChhHhHHHHHHHHHHHH
Confidence 89999999999988888643
No 203
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=23.78 E-value=1.6e+02 Score=24.04 Aligned_cols=53 Identities=9% Similarity=0.149 Sum_probs=38.5
Q ss_pred CCHHHHHHHhhcCCCccEEEEeeccCChhHHHHHHHHHcCCCCCCEEEEecCCcc
Q 014132 30 STLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 30 ~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~a~~~~~~~~~KPvv~~~~G~~~ 84 (430)
-++.+.++.+.+|++...|++.-+.-..-..+..++.+ +..+|+|..+-+...
T Consensus 28 ee~~~~l~~l~~~~~~gIIii~e~~~~~~~~~l~~~~~--~~~~P~iv~IP~~~~ 80 (95)
T PF01990_consen 28 EEAEEALKELLKDEDVGIIIITEDLAEKIRDELDEYRE--ESSLPLIVEIPSKEG 80 (95)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEHHHHTTHHHHHHHHHH--TSSSSEEEEESTTCC
T ss_pred HHHHHHHHHHhcCCCccEEEeeHHHHHHHHHHHHHHHh--ccCCceEEEcCCCCC
Confidence 35678888888899998777776655544555666655 457999999966544
No 204
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=23.74 E-value=1.4e+02 Score=33.68 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=35.1
Q ss_pred CHHHHHHHhhcCCCccEEEEeeccCCh-------hH-------HHH-------HHHHH-cCCCCCCEEEEecCCcc
Q 014132 31 TLSDHILRFNNIPQVKMMVVLGELGGR-------DE-------YSL-------VEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Ivl~gE~~~~-------~E-------~~~-------a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
.+.++++.+.+|++.++||+.|..++. .| .+. .+++. -...+||||+.+.|-+-
T Consensus 38 ~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~ 113 (708)
T PRK11154 38 QVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAAIHGACL 113 (708)
T ss_pred HHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeee
Confidence 367788888899999999999754310 01 111 11111 12479999999999753
No 205
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=23.42 E-value=2e+02 Score=31.57 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=33.0
Q ss_pred HHHHHHHhh-cCCCccEEEEeeccCC---------h----h--H-HHH----HHHHH-cCCCCCCEEEEe-cCCcc
Q 014132 32 LSDHILRFN-NIPQVKMMVVLGELGG---------R----D--E-YSL----VEALK-QGKVNKPVVAWV-SGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~-~Dp~T~~Ivl~gE~~~---------~----~--E-~~~----a~~~~-~~~~~KPvv~~~-~G~~~ 84 (430)
+.+++..+. +||+.++||+.|+... . . . .+. .+.+. -...+||||+.+ -|-.-
T Consensus 303 L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~ 378 (546)
T TIGR03222 303 LDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCF 378 (546)
T ss_pred HHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEe
Confidence 456777777 5699999999998533 0 0 0 011 11111 125789999999 67654
No 206
>PRK14095 pgi glucose-6-phosphate isomerase; Provisional
Probab=22.86 E-value=1.3e+02 Score=32.82 Aligned_cols=50 Identities=18% Similarity=0.138 Sum_probs=32.4
Q ss_pred CCHHHHHHHhh-cCCCccEEEEeeccCChhHHHH-----HHHHHcC--CCCCCEEEEe
Q 014132 30 STLSDHILRFN-NIPQVKMMVVLGELGGRDEYSL-----VEALKQG--KVNKPVVAWV 79 (430)
Q Consensus 30 ~~~~d~l~~l~-~Dp~T~~Ivl~gE~~~~~E~~~-----a~~~~~~--~~~KPvv~~~ 79 (430)
++-.++-+.+. -||++-.++++++.+++.|--. ++|+++. ...|.+|++-
T Consensus 189 vDp~~~~e~L~~ldpe~TLfiviSKSGtT~ETl~n~~~~r~wl~~~G~~~~~h~VaVT 246 (533)
T PRK14095 189 VDPDDAAEVLSEIDLAKTLFIVVSKSGTTLETAANEEFVRDALKKAGLDYKKHFIAVT 246 (533)
T ss_pred CCHHHHHHHHhcCCcccEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCccccceEEEEE
Confidence 34444444444 2999999999999999998443 4676532 1346666553
No 207
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=22.38 E-value=8.1e+02 Score=24.69 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=18.8
Q ss_pred CCeeEEEEecCCccCCCC--HHHHHHHhhcCCCccE
Q 014132 14 DGIYEGIAIGGDVFPGST--LSDHILRFNNIPQVKM 47 (430)
Q Consensus 14 ~G~S~~i~~Ggd~i~g~~--~~d~l~~l~~Dp~T~~ 47 (430)
-|++.++=+|||+..-.+ +.++++.+..=|..+.
T Consensus 141 ~~i~~VvltGGEPL~~~d~~L~~ll~~l~~i~~~~~ 176 (321)
T TIGR03821 141 PEINEVILSGGDPLMAKDHRLDWLLNLLEQIPHLKR 176 (321)
T ss_pred CCCCEEEEeCcccccCCchHHHHHHHHHHhCCCCcE
Confidence 355666666666654434 5566655555444333
No 208
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=22.34 E-value=1.9e+02 Score=32.78 Aligned_cols=53 Identities=26% Similarity=0.381 Sum_probs=32.5
Q ss_pred CHHHHHHHhhcCCCccEEE-EeeccCCh---------------hH-----HHHHHHHH-cCCCCCCEEEEecCCc
Q 014132 31 TLSDHILRFNNIPQVKMMV-VLGELGGR---------------DE-----YSLVEALK-QGKVNKPVVAWVSGTC 83 (430)
Q Consensus 31 ~~~d~l~~l~~Dp~T~~Iv-l~gE~~~~---------------~E-----~~~a~~~~-~~~~~KPvv~~~~G~~ 83 (430)
.+.++++.+.+||++++|| +.|+.... .+ ....+++. -...+||||+.+.|.+
T Consensus 45 ~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a 119 (737)
T TIGR02441 45 EFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSC 119 (737)
T ss_pred HHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 4567788888899999764 56765210 11 01112222 1247899999998864
No 209
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=21.61 E-value=2.2e+02 Score=27.59 Aligned_cols=51 Identities=22% Similarity=0.250 Sum_probs=29.3
Q ss_pred HHHHHHHhhcCCCccEEEEeeccCC-----h-hHH------H-------HHHHHH-cCCCCCCEEEEecCCcc
Q 014132 32 LSDHILRFNNIPQVKMMVVLGELGG-----R-DEY------S-------LVEALK-QGKVNKPVVAWVSGTCA 84 (430)
Q Consensus 32 ~~d~l~~l~~Dp~T~~Ivl~gE~~~-----~-~E~------~-------~a~~~~-~~~~~KPvv~~~~G~~~ 84 (430)
+.++++.+. |+.++||+.|+... . .|. + ..+++. -...+||||+.+-|..-
T Consensus 34 l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 104 (255)
T PRK08150 34 LRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAVV 104 (255)
T ss_pred HHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEE
Confidence 344555443 78899999887531 0 010 0 111111 12478999999988765
No 210
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=21.54 E-value=4.2e+02 Score=28.04 Aligned_cols=76 Identities=21% Similarity=0.306 Sum_probs=50.8
Q ss_pred ChHHHHHHHHhcCCCeeEEEEecCCccCCCCHHHHHHHhhcCC-CccEEEEee---ccCChh-H-----HHHHHHHHcCC
Q 014132 1 MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIP-QVKMMVVLG---ELGGRD-E-----YSLVEALKQGK 70 (430)
Q Consensus 1 ~~~ei~~~~~~~g~G~S~~i~~Ggd~i~g~~~~d~l~~l~~Dp-~T~~Ivl~g---E~~~~~-E-----~~~a~~~~~~~ 70 (430)
|-||+.+.+.+.--|.|-+.|+|-..=-|- |+-..+.+.. ..|..++|| |+||.. . .-.+||+|+ .
T Consensus 163 l~~ELI~Nia~~h~g~SVFaGvGERtREGn---dLy~Em~es~vl~ktalv~gQMNEpPGaR~RValtGlT~AEyfRD-~ 238 (468)
T COG0055 163 LIQELINNIAKEHGGYSVFAGVGERTREGN---DLYHEMKESGVLDKTALVFGQMNEPPGARMRVALTGLTMAEYFRD-E 238 (468)
T ss_pred eHHHHHHHHHHHcCCeEEEEeccccccchH---HHHHHHHhcCCCCceeEEEeecCCCCcceeeehhhhhhHHHHhhc-c
Confidence 358888888988899999999987552233 3333343333 356667776 677654 2 344888885 3
Q ss_pred CCCCEEEEec
Q 014132 71 VNKPVVAWVS 80 (430)
Q Consensus 71 ~~KPvv~~~~ 80 (430)
.++-|+.|+-
T Consensus 239 ~gqdVLlFID 248 (468)
T COG0055 239 EGQDVLLFID 248 (468)
T ss_pred cCCeEEEEeh
Confidence 5788888873
No 211
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=21.41 E-value=1.8e+02 Score=31.92 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=18.9
Q ss_pred HHHHHHHhhc-CCCccEEEEeecc
Q 014132 32 LSDHILRFNN-IPQVKMMVVLGEL 54 (430)
Q Consensus 32 ~~d~l~~l~~-Dp~T~~Ivl~gE~ 54 (430)
+.++++.+.+ ||+.++||+.|+.
T Consensus 307 L~~al~~~~~~d~~vr~vVltg~G 330 (550)
T PRK08184 307 LDDAILHLRTNELDIGTWVLKTEG 330 (550)
T ss_pred HHHHHHHHHhcCCCeEEEEEEcCC
Confidence 5567777775 8999999999986
No 212
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=20.30 E-value=2.4e+02 Score=30.88 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=18.0
Q ss_pred HHHHHHHhh-cCCCccEEEEeecc
Q 014132 32 LSDHILRFN-NIPQVKMMVVLGEL 54 (430)
Q Consensus 32 ~~d~l~~l~-~Dp~T~~Ivl~gE~ 54 (430)
+.++++.+. +||+.++||+.|+.
T Consensus 57 L~~al~~~~~~d~~vrvVVLtg~g 80 (550)
T PRK08184 57 LHDALQRIRFEHPEVRTVVVTSAK 80 (550)
T ss_pred HHHHHHHHHhcCCCeEEEEEecCC
Confidence 455666667 68999999999875
Done!