BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014133
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U6Z|A Chain A, Structure Of An E. Coli Exopolyphosphatase: Insight Into
The Processive Hydrolysis Of Polyphosphate And Its
Regulation
pdb|1U6Z|B Chain B, Structure Of An E. Coli Exopolyphosphatase: Insight Into
The Processive Hydrolysis Of Polyphosphate And Its
Regulation
Length = 513
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/423 (22%), Positives = 186/423 (43%), Gaps = 48/423 (11%)
Query: 11 PQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLXXXXXXXXXXXXXXVE 70
PQ FA++D+G++SF ++I R +G I LKQ V L L +
Sbjct: 10 PQE-FAAVDLGSNSFHMVIARVV-DGAMQIIGRLKQRVHLADGLGPDNMLSEEAMTRGLN 67
Query: 71 SLLMFRDIIQSHNISRDHXXXXXXXXXXXXENKDEFVECVREKVGFEVDVLTGEQEAKFV 130
L +F + +Q S N +F++ + + + +++++G +EA+ +
Sbjct: 68 CLSLFAERLQG--FSPASVCIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLI 125
Query: 131 YMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF---GTCSG 187
+MGV P R L +DIGGGSTE VIG+ + + ES +G VS ++ + G +
Sbjct: 126 FMGVEHTQPEKGR-KLVIDIGGGSTELVIGENFEPILVESRRMGCVSFAQLYFPGGVINK 184
Query: 188 -NFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVSGYDRDFVDNV 246
NF+ +M ++ L + + + G+ VA+G+SGTI+A + ++ ++D +
Sbjct: 185 ENFQRA-RMAAAQKLETLTW----QFRIQGWNVAMGASGTIKAAHEVLMEMGEKDGI--- 236
Query: 247 GDFGGCKRDWRLSRGELKGIVERLCCGGDGXXXXXXXXXXXXXXXXXIVAGAVLLDEIFE 306
++ L+ +V+ + + V G +L +F+
Sbjct: 237 -----------ITPERLEKLVKEVLRHRN--FASLSLPGLSEERKTVFVPGLAILCGVFD 283
Query: 307 LLGIEEMEVSGYGLGEGVVADSLAKVFDGYDLNANARWRSVVRLAMRFNNKKRVKAGAQC 366
L I E+ +S L EGV+ + +G + + R R+ LA +++ + +
Sbjct: 284 ALAIRELRLSDGALREGVLYE-----MEGRFRHQDVRSRTASSLANQYHIDS--EQARRV 336
Query: 367 ASIAKDIFEGLR-KCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQSC 425
++E R + KL + Q++ + L A +LH +G + G H+ S
Sbjct: 337 LDTTMQMYEQWREQQPKLAHPQLEAL----------LRWAAMLHEVGLNINHSGLHRHSA 386
Query: 426 HII 428
+I+
Sbjct: 387 YIL 389
>pdb|2FLO|A Chain A, Crystal Structure Of Exopolyphosphatase (Ppx) From E. Coli
O157:h7
pdb|2FLO|B Chain B, Crystal Structure Of Exopolyphosphatase (Ppx) From E. Coli
O157:h7
pdb|2FLO|C Chain C, Crystal Structure Of Exopolyphosphatase (Ppx) From E. Coli
O157:h7
pdb|2FLO|D Chain D, Crystal Structure Of Exopolyphosphatase (Ppx) From E. Coli
O157:h7
Length = 524
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/420 (23%), Positives = 176/420 (41%), Gaps = 40/420 (9%)
Query: 11 PQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLXXXXXXXXXXXXXXVE 70
PQ FA++D+G++SF +I R +G I LKQ V L L +
Sbjct: 21 PQE-FAAVDLGSNSFHXVIARVV-DGAXQIIGRLKQRVHLADGLGPDNXLSEEAXTRGLN 78
Query: 71 SLLMFRDIIQSHNISRDHXXXXXXXXXXXXENKDEFVECVREKVGFEVDVLTGEQEAKFV 130
L +F + +Q S N +F++ + + + +++++G +EA+ +
Sbjct: 79 CLSLFAERLQG--FSPASVCIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLI 136
Query: 131 YMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFGTCSGNFE 190
+ GV P R L +DIGGGSTE VIG+ + + ES G VS ++ + +
Sbjct: 137 FXGVEHTQPEKGR-KLVIDIGGGSTELVIGENFEPILVESRRXGCVSFAQLYFPGGVINK 195
Query: 191 EVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVSGYDRDFVDNVGDFG 250
E + LE L + + G+ VA G+SGTI+A + + ++D +
Sbjct: 196 ENFQRARXAAAQKLE-TLTWQFRIQGWNVAXGASGTIKAAHEVLXEXGEKDGI------- 247
Query: 251 GCKRDWRLSRGELKGIVERLCCGGDGXXXXXXXXXXXXXXXXXIVAGAVLLDEIFELLGI 310
++ L+ +V+ + + V G +L +F+ L I
Sbjct: 248 -------ITPERLEKLVKEVLRHRN--FASLSLPGLSEERKTVFVPGLAILCGVFDALAI 298
Query: 311 EEMEVSGYGLGEGVVADSLAKVFDGYDLNANARWRSVVRLAMRFNNKKRVKAGAQCASIA 370
E+ +S L EGV+ + +G + + R R+ LA +++ + +
Sbjct: 299 RELRLSDGALREGVLYEX-----EGRFRHQDVRSRTASSLANQYHIDS--EQARRVLDTT 351
Query: 371 KDIFEGLR-KCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQSCHIIM 429
+E R + KL + Q++ + L A LH +G + G H+ S +I+
Sbjct: 352 XQXYEQWREQQPKLAHPQLEAL----------LRWAAXLHEVGLNINHSGLHRHSAYILQ 401
>pdb|3MDQ|A Chain A, Crystal Structure Of An Exopolyphosphatase (Chu_0316) From
Cytophaga Hutchinsonii Atcc 33406 At 1.50 A Resolution
Length = 315
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 3/165 (1%)
Query: 18 IDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLXXXXXXXXXXXXXXVESLLMFRD 77
ID GT++F LLI N + T+ K V LG+ +++L FR
Sbjct: 9 IDXGTNTFHLLITDIV-NDRPHTLVNEKSAVGLGKGGITKGFITEEAXDRALDTLKKFRV 67
Query: 78 IIQSHNISRDHXXXXXXXXXXXXENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQF 137
I+ H + H NK ++ ++++V +V+V+ G +EA+ ++ GV Q
Sbjct: 68 ILDEHAVV--HVIATGTSAVRSGSNKQVLIDRIKKEVNIDVEVIDGAREAELIFRGVQQA 125
Query: 138 LPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF 182
+P D + L+ DIGGGS EF+IG + ++++ +S +G L ++F
Sbjct: 126 VPXEDHISLAXDIGGGSVEFIIGNKNEILWKQSFEIGGQRLIDRF 170
>pdb|2J4R|A Chain A, Structural Study Of The Aquifex Aeolicus Ppx-Gppa Enzyme
pdb|2J4R|B Chain B, Structural Study Of The Aquifex Aeolicus Ppx-Gppa Enzyme
Length = 308
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 4/186 (2%)
Query: 9 QIPQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLXXXXXXXXXXXXXX 68
+P ASID+G++S +L I + +GK I + LG +
Sbjct: 3 HMPIMRVASIDIGSNSVRLTIAQI-KDGKLSIILERGRITSLGTKVKETGRLQEDRIEET 61
Query: 69 VESLLMFRDIIQSHNISRDHXXXXXXXXXXXXENKDEFVECVREKVGFEVDVLTGEQEAK 128
++ L ++ +I + R +N +EF+E V+ +VG V+V+T EQE +
Sbjct: 62 IQVLKEYKKLIDEFKVER--VKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGR 119
Query: 129 FVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFGTCSGN 188
+ Y+ V L + V VD GGGSTE+V GK KV S+ +G V+L+E F
Sbjct: 120 YAYLAVAYSLKP-EGEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPP 178
Query: 189 FEEVLK 194
EE +K
Sbjct: 179 TEEEVK 184
>pdb|1T6D|A Chain A, Miras Phasing Of The Aquifex Aeolicus PpxGPPA PHOSPHATASE:
CRYSTAL Structure Of The Type Ii Variant
pdb|1T6D|B Chain B, Miras Phasing Of The Aquifex Aeolicus PpxGPPA PHOSPHATASE:
CRYSTAL Structure Of The Type Ii Variant
Length = 315
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 86/184 (46%), Gaps = 4/184 (2%)
Query: 11 PQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLXXXXXXXXXXXXXXVE 70
P ASID+G+ S +L I + +GK I + LG + ++
Sbjct: 10 PIXRVASIDIGSYSVRLTIAQI-KDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQ 68
Query: 71 SLLMFRDIIQSHNISRDHXXXXXXXXXXXXENKDEFVECVREKVGFEVDVLTGEQEAKFV 130
L ++ +I + R +N +EF+E V+ +VG V+V+T EQE ++
Sbjct: 69 VLKEYKKLIDEFKVERXKAVATEAIRRA--KNAEEFLERVKREVGLVVEVITPEQEGRYA 126
Query: 131 YMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFGTCSGNFE 190
Y+ V L + V VD GGGSTE+V GK KV S+ +G V+L+E F E
Sbjct: 127 YLAVAYSLKP-EGEVXVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPTE 185
Query: 191 EVLK 194
E +K
Sbjct: 186 EEVK 189
>pdb|1T6C|A Chain A, Structural Characterization Of The PpxGPPA PROTEIN FAMILY:
CRYSTAL Structure Of The Aquifex Aeolicus Family Member
Length = 315
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 86/184 (46%), Gaps = 4/184 (2%)
Query: 11 PQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLXXXXXXXXXXXXXXVE 70
P ASID+G+ S +L I + +GK I + LG + ++
Sbjct: 10 PIMRVASIDIGSYSVRLTIAQI-KDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQ 68
Query: 71 SLLMFRDIIQSHNISRDHXXXXXXXXXXXXENKDEFVECVREKVGFEVDVLTGEQEAKFV 130
L ++ +I + R +N +EF+E V+ +VG V+V+T EQE ++
Sbjct: 69 VLKEYKKLIDEFKVER--VKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGRYA 126
Query: 131 YMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFGTCSGNFE 190
Y+ V L + V VD GGGSTE+V GK KV S+ +G V+L+E F E
Sbjct: 127 YLAVAYSLKP-EGEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPTE 185
Query: 191 EVLK 194
E +K
Sbjct: 186 EEVK 189
>pdb|3CER|A Chain A, Crystal Structure Of The Exopolyphosphatase-Like Protein
Q8g5j2. Northeast Structural Genomics Consortium Target
Blr13
pdb|3CER|B Chain B, Crystal Structure Of The Exopolyphosphatase-Like Protein
Q8g5j2. Northeast Structural Genomics Consortium Target
Blr13
pdb|3CER|C Chain C, Crystal Structure Of The Exopolyphosphatase-Like Protein
Q8g5j2. Northeast Structural Genomics Consortium Target
Blr13
pdb|3CER|D Chain D, Crystal Structure Of The Exopolyphosphatase-Like Protein
Q8g5j2. Northeast Structural Genomics Consortium Target
Blr13
pdb|3CER|E Chain E, Crystal Structure Of The Exopolyphosphatase-Like Protein
Q8g5j2. Northeast Structural Genomics Consortium Target
Blr13
Length = 343
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 10/177 (5%)
Query: 16 ASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLXXXXXXXXXXXXXXVESLLMF 75
A ID GT+S +L I R +G + + + + LG+D+ + F
Sbjct: 19 AGIDCGTNSIRLKIARVDADGXHEVVPRILRVIRLGQDVDKTHRFADEALERAYVAAREF 78
Query: 76 RDIIQSHNISRDHXXXXXXXXXXXXENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVL 135
+I H I D EN++EF + + +G +V+ G +EA ++G
Sbjct: 79 AGVIAEHPI--DGLRFVATSATRDAENREEFEDEIERILGVRPEVIPGTEEADLSFLGAT 136
Query: 136 QFLPVFDRLV--LSVDIGGGSTEFVIGKRG------KVVFCESVNLGHVSLSEKFGT 184
+ D L VD+GGGSTE VIG G +V S N+G V +E+ T
Sbjct: 137 SVVNRDDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQVQGAFSXNIGSVRXTERHLT 193
>pdb|3HI0|A Chain A, Crystal Structure Of Putative Exopolyphosphatase
(17739545) From Agrobacterium Tumefaciens Str. C58
(Dupont) At 2.30 A Resolution
pdb|3HI0|B Chain B, Crystal Structure Of Putative Exopolyphosphatase
(17739545) From Agrobacterium Tumefaciens Str. C58
(Dupont) At 2.30 A Resolution
Length = 508
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 12/140 (8%)
Query: 101 ENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160
EN +F+ +G E++VL+GE+EA + GV+ D ++ D+GGGS E +
Sbjct: 100 ENGPDFIREAEAILGCEIEVLSGEKEALYSAYGVISGFYQPDG--IAGDLGGGSLELIDI 157
Query: 161 KRGKVVFCESVNLGHVSLSEKFGTCSGNFEEVLKMREYVRMVILEFGLVEKVKESGFEVA 220
K ++ LG + LSE+ G+ E+ + R + F + E A
Sbjct: 158 KDKSCGEGITLPLGGLRLSEQ---SDGSLEKAATI---ARKHVKSFAKLLAAGEGRTFYA 211
Query: 221 VGSSGTIRAIEK--AVVSGY 238
VG GT R I K +SGY
Sbjct: 212 VG--GTWRNIAKLHXEISGY 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,296,550
Number of Sequences: 62578
Number of extensions: 441384
Number of successful extensions: 1079
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1050
Number of HSP's gapped (non-prelim): 19
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)