Query 014133
Match_columns 430
No_of_seqs 240 out of 1481
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:10:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11031 guanosine pentaphosph 100.0 9.2E-89 2E-93 707.8 44.9 382 8-430 1-383 (496)
2 PRK10854 exopolyphosphatase; P 100.0 1.6E-87 3.4E-92 701.7 43.5 380 12-430 10-391 (513)
3 COG0248 GppA Exopolyphosphatas 100.0 3.3E-83 7.1E-88 655.6 35.9 384 12-430 2-388 (492)
4 TIGR03706 exo_poly_only exopol 100.0 1.4E-65 3E-70 503.6 33.7 296 14-329 1-299 (300)
5 PF02541 Ppx-GppA: Ppx/GppA ph 100.0 1.1E-58 2.5E-63 452.1 27.6 282 28-331 1-284 (285)
6 PRK15080 ethanolamine utilizat 99.7 1E-15 2.2E-20 148.0 20.0 151 9-183 20-175 (267)
7 PF01150 GDA1_CD39: GDA1/CD39 99.0 3.4E-09 7.4E-14 109.6 12.5 147 13-162 8-183 (434)
8 TIGR02529 EutJ ethanolamine ut 98.8 3.6E-07 7.8E-12 87.0 18.6 147 18-184 2-149 (239)
9 KOG1385 Nucleoside phosphatase 98.6 7.6E-08 1.6E-12 95.3 8.0 149 12-163 66-233 (453)
10 KOG1386 Nucleoside phosphatase 98.5 4.2E-07 9E-12 92.1 10.3 158 15-174 11-198 (501)
11 PRK09472 ftsA cell division pr 98.4 2E-05 4.3E-10 81.3 17.6 166 12-183 7-244 (420)
12 TIGR01174 ftsA cell division p 98.2 4.7E-05 1E-09 77.3 16.8 163 15-183 2-236 (371)
13 TIGR01175 pilM type IV pilus a 98.2 0.00055 1.2E-08 68.6 22.6 164 12-183 2-228 (348)
14 COG0849 ftsA Cell division ATP 98.0 0.0005 1.1E-08 70.3 17.9 41 144-184 204-244 (418)
15 PRK10719 eutA reactivating fac 97.8 0.00028 6E-09 72.3 12.0 152 15-181 8-184 (475)
16 PF06723 MreB_Mbl: MreB/Mbl pr 97.7 0.00089 1.9E-08 66.5 14.8 118 56-181 64-183 (326)
17 PF01966 HD: HD domain; Inter 97.6 5.5E-05 1.2E-09 62.9 3.3 53 361-429 3-68 (122)
18 PF06277 EutA: Ethanolamine ut 97.5 0.0017 3.7E-08 66.6 13.1 151 15-175 5-175 (473)
19 PRK13928 rod shape-determining 97.4 0.0048 1E-07 61.7 14.6 118 56-182 66-186 (336)
20 PF11104 PilM_2: Type IV pilus 97.2 0.0087 1.9E-07 60.0 14.3 40 144-183 181-220 (340)
21 PRK13929 rod-share determining 97.1 0.011 2.4E-07 59.2 14.2 118 56-182 67-189 (335)
22 PRK13930 rod shape-determining 97.0 0.01 2.2E-07 59.1 13.1 156 16-182 11-191 (335)
23 TIGR00241 CoA_E_activ CoA-subs 97.0 0.0097 2.1E-07 56.9 11.8 130 15-184 2-135 (248)
24 COG4972 PilM Tfp pilus assembl 96.8 0.11 2.3E-06 51.1 17.5 71 113-183 160-233 (354)
25 TIGR00904 mreB cell shape dete 96.7 0.025 5.4E-07 56.5 13.2 76 103-182 113-189 (333)
26 TIGR00295 conserved hypothetic 96.6 0.0033 7.1E-08 56.3 5.5 67 349-428 3-71 (164)
27 PRK13927 rod shape-determining 96.6 0.042 9.2E-07 54.7 14.1 88 92-183 100-188 (334)
28 cd00077 HDc Metal dependent ph 96.6 0.0017 3.7E-08 54.6 3.4 54 361-429 5-69 (145)
29 smart00471 HDc Metal dependent 96.3 0.0052 1.1E-07 50.4 4.2 52 361-429 7-68 (124)
30 COG3294 HD supefamily hydrolas 95.9 0.0088 1.9E-07 55.2 4.0 66 360-428 59-126 (269)
31 smart00268 ACTIN Actin. ACTIN 95.9 0.087 1.9E-06 53.3 11.7 94 82-183 89-185 (373)
32 cd00012 ACTIN Actin; An ubiqui 95.5 0.22 4.8E-06 50.4 13.1 87 88-183 95-185 (371)
33 PF08841 DDR: Diol dehydratase 95.3 0.054 1.2E-06 51.9 7.0 88 91-182 83-172 (332)
34 TIGR00277 HDIG uncharacterized 95.3 0.024 5.3E-07 43.3 4.0 50 361-428 7-61 (80)
35 COG4819 EutA Ethanolamine util 95.3 0.16 3.5E-06 49.8 10.3 153 16-175 8-177 (473)
36 COG1077 MreB Actin-like ATPase 95.2 0.082 1.8E-06 51.8 8.1 72 104-180 118-190 (342)
37 COG4820 EutJ Ethanolamine util 95.0 0.086 1.9E-06 48.2 7.0 145 9-178 25-175 (277)
38 COG5371 Golgi nucleoside dipho 94.9 0.045 9.8E-07 55.7 5.5 143 13-161 120-285 (549)
39 PRK12703 tRNA 2'-O-methylase; 94.7 0.054 1.2E-06 53.9 5.5 65 345-427 173-239 (339)
40 TIGR03401 cyanamide_fam HD dom 94.7 0.09 2E-06 49.6 6.8 58 343-414 40-97 (228)
41 PTZ00004 actin-2; Provisional 94.6 0.68 1.5E-05 47.1 13.6 155 15-183 8-191 (378)
42 PTZ00280 Actin-related protein 94.6 0.51 1.1E-05 48.6 12.8 120 57-183 75-202 (414)
43 PF00370 FGGY_N: FGGY family o 94.4 0.16 3.4E-06 48.2 7.9 80 14-99 1-80 (245)
44 COG1078 HD superfamily phospho 94.4 0.042 9.1E-07 56.5 4.1 45 361-414 54-98 (421)
45 COG1418 Predicted HD superfami 93.9 0.07 1.5E-06 50.2 4.4 46 360-423 38-83 (222)
46 smart00842 FtsA Cell division 93.9 0.26 5.7E-06 44.8 8.0 77 15-97 1-79 (187)
47 PRK13917 plasmid segregation p 93.3 0.19 4E-06 50.6 6.4 41 142-182 184-226 (344)
48 COG2206 c-di-GMP phosphodieste 93.2 0.096 2.1E-06 52.6 4.2 39 361-414 151-189 (344)
49 PTZ00466 actin-like protein; P 93.0 1.7 3.7E-05 44.3 13.0 157 13-183 12-196 (380)
50 TIGR01596 cas3_HD CRISPR-assoc 92.6 0.1 2.3E-06 46.6 3.2 45 361-415 3-47 (177)
51 TIGR03739 PRTRC_D PRTRC system 92.1 0.27 5.9E-06 48.8 5.8 66 117-182 141-208 (320)
52 TIGR02261 benz_CoA_red_D benzo 91.7 0.94 2E-05 43.6 8.6 135 14-183 2-141 (262)
53 PRK00106 hypothetical protein; 90.7 0.49 1.1E-05 50.1 6.1 60 346-423 337-397 (535)
54 TIGR03276 Phn-HD phosphonate d 90.7 0.26 5.7E-06 44.6 3.5 33 361-416 28-60 (179)
55 PTZ00452 actin; Provisional 90.6 4.9 0.00011 40.8 13.2 154 14-183 6-190 (375)
56 COG1940 NagC Transcriptional r 90.0 6.8 0.00015 38.4 13.4 145 13-175 6-164 (314)
57 TIGR03319 YmdA_YtgF conserved 90.0 0.29 6.3E-06 51.8 3.8 50 361-428 332-384 (514)
58 TIGR01991 HscA Fe-S protein as 89.8 3 6.4E-05 45.2 11.4 116 59-182 103-225 (599)
59 PF00022 Actin: Actin; InterP 89.8 6.2 0.00013 40.0 13.3 92 82-182 88-183 (393)
60 TIGR00488 putative HD superfam 89.7 0.47 1E-05 42.0 4.3 38 361-416 11-48 (158)
61 PTZ00281 actin; Provisional 89.6 4.7 0.0001 41.0 12.1 95 81-183 94-191 (376)
62 PRK13480 3'-5' exoribonuclease 89.5 0.36 7.8E-06 47.8 3.8 42 361-419 162-203 (314)
63 PRK12704 phosphodiesterase; Pr 89.5 0.39 8.5E-06 50.9 4.2 50 361-428 338-390 (520)
64 CHL00094 dnaK heat shock prote 89.4 3.9 8.4E-05 44.5 11.9 71 107-181 154-230 (621)
65 PF00480 ROK: ROK family; Int 89.3 4 8.7E-05 36.3 10.3 141 17-175 1-149 (179)
66 PRK05183 hscA chaperone protei 89.1 3.6 7.8E-05 44.8 11.4 115 59-182 123-245 (616)
67 TIGR03286 methan_mark_15 putat 88.7 1.5 3.3E-05 44.7 7.6 120 13-166 144-264 (404)
68 TIGR03192 benz_CoA_bzdQ benzoy 88.6 7.4 0.00016 38.1 12.0 131 14-182 33-168 (293)
69 PRK12705 hypothetical protein; 88.5 0.47 1E-05 49.9 4.0 50 361-428 326-378 (508)
70 TIGR01353 dGTP_triPase deoxygu 88.4 0.58 1.3E-05 47.7 4.5 46 361-413 41-86 (381)
71 PTZ00186 heat shock 70 kDa pre 88.3 4.8 0.0001 44.1 11.8 111 60-178 135-252 (657)
72 PRK00290 dnaK molecular chaper 88.2 3.3 7.2E-05 45.1 10.5 71 107-181 152-228 (627)
73 PRK10119 putative hydrolase; P 87.9 0.76 1.6E-05 43.5 4.6 36 360-413 27-62 (231)
74 COG3437 Response regulator con 87.9 0.51 1.1E-05 47.0 3.5 40 360-414 187-226 (360)
75 PRK10939 autoinducer-2 (AI-2) 87.6 1.7 3.6E-05 46.2 7.6 79 13-98 3-84 (520)
76 PRK13410 molecular chaperone D 87.5 5.4 0.00012 43.8 11.6 114 59-180 109-229 (668)
77 PRK11678 putative chaperone; P 87.4 10 0.00022 39.6 13.0 85 71-161 133-227 (450)
78 PRK13318 pantothenate kinase; 86.7 7.3 0.00016 37.3 10.8 129 15-166 2-147 (258)
79 PRK13321 pantothenate kinase; 86.7 13 0.00029 35.5 12.6 129 16-166 3-147 (256)
80 PF00012 HSP70: Hsp70 protein; 86.7 4.6 9.9E-05 43.5 10.4 75 105-182 152-232 (602)
81 PRK01286 deoxyguanosinetriphos 86.6 0.85 1.8E-05 45.6 4.3 35 361-413 65-99 (336)
82 COG1713 Predicted HD superfami 86.4 1.2 2.6E-05 40.4 4.8 41 361-419 20-60 (187)
83 PTZ00400 DnaK-type molecular c 86.4 5.7 0.00012 43.6 11.1 106 69-181 156-269 (663)
84 TIGR02350 prok_dnaK chaperone 86.4 4.9 0.00011 43.5 10.4 71 107-180 149-225 (595)
85 KOG2681 Metal-dependent phosph 85.9 0.95 2.1E-05 46.0 4.2 46 361-413 76-121 (498)
86 PLN03184 chloroplast Hsp70; Pr 85.3 8 0.00017 42.6 11.5 71 107-181 191-267 (673)
87 TIGR00744 ROK_glcA_fam ROK fam 85.0 21 0.00044 35.0 13.4 132 17-167 2-147 (318)
88 PTZ00009 heat shock 70 kDa pro 84.8 11 0.00023 41.4 12.2 107 70-180 123-236 (653)
89 PRK07152 nadD putative nicotin 84.6 1 2.2E-05 45.2 3.9 38 361-416 199-236 (342)
90 PF14450 FtsA: Cell division p 84.6 0.5 1.1E-05 39.8 1.4 27 15-41 1-27 (120)
91 TIGR00555 panK_eukar pantothen 84.2 27 0.00058 34.1 13.3 133 16-182 3-139 (279)
92 TIGR02628 fuculo_kin_coli L-fu 84.0 4.8 0.0001 42.1 8.8 75 14-97 2-79 (465)
93 PRK05318 deoxyguanosinetriphos 83.8 1.3 2.9E-05 45.8 4.4 43 361-413 61-106 (432)
94 PF14450 FtsA: Cell division p 83.3 2.1 4.5E-05 36.0 4.7 33 145-177 1-33 (120)
95 KOG2517 Ribulose kinase and re 83.1 3.8 8.2E-05 43.1 7.3 83 12-99 5-90 (516)
96 COG4341 Predicted HD phosphohy 82.8 0.64 1.4E-05 41.0 1.3 24 401-424 50-73 (186)
97 PRK13411 molecular chaperone D 82.2 11 0.00024 41.3 11.0 114 60-180 108-228 (653)
98 PRK01433 hscA chaperone protei 82.1 6 0.00013 42.9 8.8 87 69-161 123-211 (595)
99 PRK01096 deoxyguanosinetriphos 82.0 1.7 3.7E-05 45.1 4.4 49 361-413 64-113 (440)
100 TIGR03760 ICE_TraI_Pfluor inte 81.7 2 4.3E-05 40.3 4.3 43 361-414 70-120 (218)
101 smart00732 YqgFc Likely ribonu 81.5 4.8 0.0001 32.0 6.1 84 15-122 3-91 (99)
102 TIGR01311 glycerol_kin glycero 81.3 4.6 0.0001 42.5 7.5 76 14-98 2-80 (493)
103 KOG0100 Molecular chaperones G 81.1 15 0.00033 37.4 10.3 113 38-165 124-249 (663)
104 COG0554 GlpK Glycerol kinase [ 81.0 6.5 0.00014 40.8 8.0 79 12-96 4-82 (499)
105 PRK00047 glpK glycerol kinase; 80.8 5.2 0.00011 42.2 7.6 77 13-98 5-84 (498)
106 COG0443 DnaK Molecular chapero 80.7 8.6 0.00019 41.5 9.3 96 59-161 94-190 (579)
107 PRK04123 ribulokinase; Provisi 79.9 8.2 0.00018 41.2 8.9 81 13-99 3-90 (548)
108 PRK03381 PII uridylyl-transfer 79.7 1.5 3.3E-05 48.9 3.3 28 400-428 443-470 (774)
109 PRK00227 glnD PII uridylyl-tra 79.1 1.8 3.8E-05 47.6 3.5 29 399-428 402-430 (693)
110 PF01869 BcrAD_BadFG: BadF/Bad 78.6 34 0.00074 32.7 12.0 126 17-167 2-130 (271)
111 COG1070 XylB Sugar (pentulose 78.5 10 0.00022 40.2 8.9 79 12-98 3-84 (502)
112 PRK04926 dgt deoxyguanosinetri 78.2 3.1 6.7E-05 43.9 4.8 47 361-413 68-121 (503)
113 PRK10331 L-fuculokinase; Provi 77.1 15 0.00033 38.4 9.8 77 13-98 2-81 (470)
114 PRK03007 deoxyguanosinetriphos 77.0 2.8 6.1E-05 43.3 4.1 35 361-413 73-107 (428)
115 TIGR01234 L-ribulokinase L-rib 76.8 9.2 0.0002 40.8 8.1 79 14-98 2-92 (536)
116 TIGR02692 tRNA_CCA_actino tRNA 76.5 2.1 4.5E-05 44.9 3.0 80 71-163 15-98 (466)
117 PTZ00294 glycerol kinase-like 75.9 10 0.00022 40.1 8.1 78 13-99 2-84 (504)
118 PRK09698 D-allose kinase; Prov 75.5 81 0.0018 30.6 13.9 137 12-168 3-154 (302)
119 PF06406 StbA: StbA protein; 75.1 6.3 0.00014 39.1 5.9 100 80-183 87-207 (318)
120 COG1069 AraB Ribulose kinase [ 74.4 11 0.00023 39.8 7.4 75 13-93 3-78 (544)
121 TIGR01315 5C_CHO_kinase FGGY-f 73.8 14 0.00031 39.4 8.6 73 15-96 2-77 (541)
122 PLN02295 glycerol kinase 72.2 15 0.00032 39.0 8.2 76 15-99 2-84 (512)
123 PRK13317 pantothenate kinase; 71.4 36 0.00077 33.1 10.0 64 114-181 67-133 (277)
124 COG1924 Activator of 2-hydroxy 71.2 25 0.00054 35.6 8.8 135 12-183 134-272 (396)
125 PRK00275 glnD PII uridylyl-tra 69.9 3.5 7.6E-05 46.9 3.0 28 399-427 497-524 (895)
126 PRK05007 PII uridylyl-transfer 69.7 4.5 9.8E-05 45.9 3.8 29 398-427 497-525 (884)
127 TIGR02621 cas3_GSU0051 CRISPR- 69.4 4.6 9.9E-05 45.2 3.7 39 361-415 678-716 (844)
128 PRK01759 glnD PII uridylyl-tra 67.8 5.1 0.00011 45.3 3.8 29 398-427 472-500 (854)
129 PRK04374 PII uridylyl-transfer 67.8 4.6 0.0001 45.7 3.4 27 400-427 487-513 (869)
130 PRK13311 N-acetyl-D-glucosamin 66.8 69 0.0015 30.4 10.9 133 15-167 2-146 (256)
131 TIGR01312 XylB D-xylulose kina 66.7 13 0.00028 38.8 6.4 72 17-97 2-76 (481)
132 PRK03059 PII uridylyl-transfer 66.7 6 0.00013 44.8 4.0 29 398-427 476-504 (856)
133 PF01968 Hydantoinase_A: Hydan 66.4 6.9 0.00015 38.3 3.9 30 142-171 76-105 (290)
134 PRK15027 xylulokinase; Provisi 65.1 28 0.00062 36.5 8.5 75 15-98 2-77 (484)
135 PF11215 DUF3010: Protein of u 63.9 40 0.00086 29.2 7.5 95 14-126 2-105 (138)
136 PRK10885 cca multifunctional t 63.8 7.1 0.00015 40.2 3.6 18 400-417 246-263 (409)
137 COG2844 GlnD UTP:GlnB (protein 63.3 3.4 7.4E-05 45.5 1.2 17 398-414 482-498 (867)
138 TIGR02707 butyr_kinase butyrat 61.6 1.5E+02 0.0033 29.9 12.6 27 142-169 173-199 (351)
139 PF14574 DUF4445: Domain of un 61.4 16 0.00034 37.7 5.5 157 16-176 4-196 (412)
140 PRK13310 N-acetyl-D-glucosamin 60.2 1.4E+02 0.0031 28.9 12.0 132 15-168 2-147 (303)
141 cd08190 HOT Hydroxyacid-oxoaci 60.2 13 0.00028 38.4 4.8 81 71-156 10-93 (414)
142 PRK13298 tRNA CCA-pyrophosphor 60.2 9 0.0002 39.5 3.5 16 400-415 247-262 (417)
143 TIGR01314 gntK_FGGY gluconate 60.0 30 0.00064 36.6 7.6 74 15-98 2-78 (505)
144 PRK09557 fructokinase; Reviewe 58.3 96 0.0021 30.1 10.4 133 15-169 2-148 (301)
145 cd08188 Fe-ADH4 Iron-containin 57.3 27 0.00057 35.5 6.4 81 71-156 15-98 (377)
146 TIGR01693 UTase_glnD [Protein- 57.0 12 0.00027 42.3 4.3 30 398-428 464-493 (850)
147 PRK05092 PII uridylyl-transfer 56.4 8.7 0.00019 44.0 3.0 28 399-427 530-557 (931)
148 PRK13324 pantothenate kinase; 56.4 1.9E+02 0.0041 27.8 11.8 130 15-166 2-147 (258)
149 COG2971 Predicted N-acetylgluc 56.2 1.8E+02 0.0039 28.6 11.5 140 12-174 4-149 (301)
150 TIGR01175 pilM type IV pilus a 56.0 90 0.0019 30.9 10.0 34 87-125 284-317 (348)
151 PRK09860 putative alcohol dehy 55.9 60 0.0013 33.1 8.7 79 71-156 18-101 (383)
152 COG0232 Dgt dGTP triphosphohyd 55.4 14 0.00031 37.9 4.0 40 361-413 71-110 (412)
153 PLN02669 xylulokinase 53.8 53 0.0012 35.3 8.3 79 12-96 7-97 (556)
154 cd08191 HHD 6-hydroxyhexanoate 53.4 29 0.00062 35.4 6.0 80 71-156 10-92 (386)
155 COG3481 Predicted HD-superfami 52.8 16 0.00034 35.7 3.7 25 397-421 163-187 (287)
156 PF00233 PDEase_I: 3'5'-cyclic 52.4 24 0.00053 33.4 4.9 42 361-413 5-46 (237)
157 COG3426 Butyrate kinase [Energ 52.3 56 0.0012 31.9 7.2 130 145-321 5-134 (358)
158 cd08192 Fe-ADH7 Iron-containin 52.1 19 0.00041 36.4 4.4 81 71-156 11-94 (370)
159 PF00633 HHH: Helix-hairpin-he 51.1 9.7 0.00021 23.8 1.3 26 268-295 3-28 (30)
160 TIGR02638 lactal_redase lactal 50.4 56 0.0012 33.1 7.5 79 71-156 16-99 (379)
161 TIGR03706 exo_poly_only exopol 50.1 1.1E+02 0.0024 29.8 9.4 57 15-74 127-184 (300)
162 PRK10624 L-1,2-propanediol oxi 48.6 60 0.0013 33.0 7.4 80 72-156 18-100 (382)
163 COG1548 Predicted transcriptio 48.5 2.6E+02 0.0057 27.1 11.1 128 14-163 4-150 (330)
164 TIGR02627 rhamnulo_kin rhamnul 48.0 28 0.00061 36.2 5.0 17 17-33 2-18 (454)
165 PRK15454 ethanol dehydrogenase 47.6 27 0.00059 35.7 4.7 81 71-156 36-119 (395)
166 PF01890 CbiG_C: Cobalamin syn 47.0 54 0.0012 27.6 5.7 62 60-130 12-73 (121)
167 cd08551 Fe-ADH iron-containing 46.1 85 0.0018 31.6 8.0 79 71-156 10-93 (370)
168 PRK10854 exopolyphosphatase; P 45.1 1.1E+02 0.0023 32.7 8.8 59 13-74 137-196 (513)
169 cd08189 Fe-ADH5 Iron-containin 44.7 30 0.00066 35.0 4.5 81 71-156 13-96 (374)
170 cd08176 LPO Lactadehyde:propan 44.4 32 0.00068 34.9 4.6 79 72-155 16-97 (377)
171 cd07766 DHQ_Fe-ADH Dehydroquin 44.1 25 0.00054 34.8 3.7 76 72-156 11-91 (332)
172 COG3894 Uncharacterized metal- 43.8 18 0.0004 37.8 2.7 161 11-176 161-360 (614)
173 PF08668 HDOD: HDOD domain; I 43.5 27 0.00059 31.5 3.6 43 361-420 97-139 (196)
174 TIGR03123 one_C_unchar_1 proba 43.2 26 0.00056 34.8 3.6 139 17-174 2-159 (318)
175 TIGR01319 glmL_fam conserved h 42.4 63 0.0014 33.8 6.3 21 144-164 250-270 (463)
176 PRK07027 cobalamin biosynthesi 41.6 77 0.0017 26.8 5.9 61 60-129 14-74 (126)
177 PRK03011 butyrate kinase; Prov 39.7 3.9E+02 0.0084 27.0 11.5 144 14-168 3-200 (358)
178 COG1454 EutG Alcohol dehydroge 39.4 1.2E+02 0.0027 30.8 7.8 81 71-156 16-99 (377)
179 cd08194 Fe-ADH6 Iron-containin 39.1 39 0.00085 34.2 4.3 81 71-156 10-93 (375)
180 KOG1573 Aldehyde reductase [Ge 36.7 44 0.00095 29.7 3.5 21 399-419 115-135 (204)
181 PRK11031 guanosine pentaphosph 36.7 1.2E+02 0.0026 32.1 7.7 58 14-74 133-191 (496)
182 COG2254 Predicted HD superfami 36.2 27 0.00058 33.0 2.3 32 396-427 48-89 (230)
183 PRK00292 glk glucokinase; Prov 35.9 2E+02 0.0044 28.0 8.8 119 13-153 2-138 (316)
184 COG0248 GppA Exopolyphosphatas 35.6 1.4E+02 0.0031 31.6 7.8 81 12-99 128-213 (492)
185 PRK13331 pantothenate kinase; 35.2 3.5E+02 0.0076 25.9 9.8 18 14-31 8-25 (251)
186 PF07514 TraI_2: Putative heli 35.1 48 0.001 33.1 4.1 17 397-413 102-118 (327)
187 cd08550 GlyDH-like Glycerol_de 33.7 75 0.0016 31.8 5.3 78 72-156 11-90 (349)
188 cd08193 HVD 5-hydroxyvalerate 33.4 1.7E+02 0.0037 29.5 7.9 81 71-156 13-96 (376)
189 COG0816 Predicted endonuclease 33.4 1.8E+02 0.004 25.2 6.9 88 13-123 2-96 (141)
190 PF03610 EIIA-man: PTS system 32.5 65 0.0014 26.5 3.9 20 136-155 52-71 (116)
191 cd08169 DHQ-like Dehydroquinat 31.8 1.5E+02 0.0032 29.8 7.0 80 73-156 12-96 (344)
192 PRK13321 pantothenate kinase; 31.6 74 0.0016 30.4 4.7 29 145-173 2-30 (256)
193 cd08175 G1PDH Glycerol-1-phosp 31.3 64 0.0014 32.2 4.4 79 72-156 11-93 (348)
194 cd08181 PPD-like 1,3-propanedi 31.1 69 0.0015 32.2 4.6 76 75-156 17-96 (357)
195 COG4680 Uncharacterized protei 30.9 40 0.00086 27.0 2.1 18 16-33 57-74 (98)
196 cd08186 Fe-ADH8 Iron-containin 29.9 1.9E+02 0.0042 29.3 7.6 77 73-156 12-97 (383)
197 PF07288 DUF1447: Protein of u 29.7 47 0.001 25.1 2.2 35 99-133 25-59 (69)
198 cd08549 G1PDH_related Glycerol 29.6 1E+02 0.0022 30.7 5.4 75 77-156 16-93 (332)
199 TIGR00250 RNAse_H_YqgF RNAse H 29.6 1.1E+02 0.0024 26.1 4.9 83 17-123 2-91 (130)
200 PF14829 GPAT_N: Glycerol-3-ph 29.2 54 0.0012 25.3 2.5 41 95-135 3-46 (77)
201 cd08185 Fe-ADH1 Iron-containin 28.8 1.9E+02 0.0042 29.2 7.4 75 74-156 16-96 (380)
202 PF13941 MutL: MutL protein 28.6 1E+02 0.0022 32.3 5.3 52 16-75 3-55 (457)
203 KOG0102 Molecular chaperones m 28.5 1.6E+02 0.0036 31.4 6.7 81 69-161 142-230 (640)
204 PRK13318 pantothenate kinase; 27.7 94 0.002 29.6 4.7 29 145-173 2-30 (258)
205 PF02541 Ppx-GppA: Ppx/GppA ph 26.4 94 0.002 30.0 4.5 82 11-98 110-196 (285)
206 cd08182 HEPD Hydroxyethylphosp 26.0 1.1E+02 0.0023 30.9 4.9 78 71-156 10-90 (367)
207 PF05225 HTH_psq: helix-turn-h 25.1 84 0.0018 21.4 2.7 25 61-85 1-29 (45)
208 PRK00002 aroB 3-dehydroquinate 24.9 3E+02 0.0065 27.6 7.9 71 78-156 25-105 (358)
209 PF00370 FGGY_N: FGGY family o 24.5 1.1E+02 0.0024 28.6 4.5 30 145-174 2-32 (245)
210 COG1480 Predicted membrane-ass 24.5 73 0.0016 34.8 3.4 41 361-419 492-532 (700)
211 TIGR02259 benz_CoA_red_A benzo 24.5 60 0.0013 33.4 2.7 19 13-31 2-20 (432)
212 KOG0679 Actin-related protein 24.4 71 0.0015 32.5 3.1 92 81-180 99-193 (426)
213 PF11762 Arabinose_Iso_C: L-ar 24.2 1E+02 0.0022 25.8 3.5 19 14-33 32-50 (115)
214 COG0145 HyuA N-methylhydantoin 23.9 85 0.0018 34.6 3.9 31 144-174 279-309 (674)
215 cd08197 DOIS 2-deoxy-scyllo-in 23.1 3.9E+02 0.0086 26.8 8.3 79 73-156 12-97 (355)
216 PF08765 Mor: Mor transcriptio 22.4 4.3E+02 0.0093 21.5 8.4 66 282-358 19-86 (108)
217 TIGR00329 gcp_kae1 metallohydr 22.3 7.4E+02 0.016 24.2 12.3 105 72-183 53-167 (305)
218 PF00465 Fe-ADH: Iron-containi 22.1 27 0.00059 35.1 -0.3 78 72-156 11-91 (366)
219 cd08183 Fe-ADH2 Iron-containin 22.0 1.3E+02 0.0028 30.5 4.6 63 88-156 24-88 (374)
220 PF00349 Hexokinase_1: Hexokin 21.8 2.3E+02 0.0049 26.2 5.9 27 13-39 63-89 (206)
221 PF00480 ROK: ROK family; Int 21.4 2.5E+02 0.0053 24.5 5.9 27 148-174 2-29 (179)
222 PRK03011 butyrate kinase; Prov 21.3 2.6E+02 0.0057 28.2 6.6 36 144-179 3-38 (358)
223 cd05565 PTS_IIB_lactose PTS_II 21.2 4.3E+02 0.0093 21.4 6.6 62 72-134 17-93 (99)
224 PRK05082 N-acetylmannosamine k 21.1 7.3E+02 0.016 23.7 12.3 129 15-167 3-145 (291)
225 PF13911 AhpC-TSA_2: AhpC/TSA 20.9 1.5E+02 0.0033 24.0 4.1 54 72-135 2-55 (115)
226 KOG1369 Hexokinase [Carbohydra 20.8 2.1E+02 0.0045 30.2 5.8 67 14-84 87-153 (474)
227 PRK12408 glucokinase; Provisio 20.6 3.1E+02 0.0067 27.3 6.9 97 13-130 16-125 (336)
228 cd08178 AAD_C C-terminal alcoh 20.3 1.5E+02 0.0032 30.3 4.7 66 88-156 23-91 (398)
229 TIGR03286 methan_mark_15 putat 20.2 2.8E+02 0.0061 28.6 6.5 77 92-168 77-169 (404)
230 PF14520 HHH_5: Helix-hairpin- 20.0 55 0.0012 23.6 1.1 27 270-298 32-58 (60)
No 1
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=100.00 E-value=9.2e-89 Score=707.82 Aligned_cols=382 Identities=29% Similarity=0.423 Sum_probs=346.7
Q ss_pred cCCCCCeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCc
Q 014133 8 MQIPQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRD 87 (430)
Q Consensus 8 ~~~~~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~ 87 (430)
|.++.+.+|||||||||+||+|+++.+ +.++++++.|++||||+|++.+|.|++++|+|++++|++|+++|++|+|+
T Consensus 1 ~~~~~~~~A~IDIGSNSirL~I~~~~~-~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~~~~~~v~-- 77 (496)
T PRK11031 1 MLSSSSLYAAIDLGSNSFHMLVVREVA-GSIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAERLQDIPPS-- 77 (496)
T ss_pred CCCCCCEEEEEEccccceeEEEEEecC-CceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHHHHhCCCC--
Confidence 345578999999999999999999864 78999999999999999999999999999999999999999999999995
Q ss_pred cEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeCCeEee
Q 014133 88 HTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVF 167 (430)
Q Consensus 88 ~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~ 167 (430)
+|++|||+|+|+|+|+++|+++|+++||++|+||||+|||+|+|+||.+.++.. ++++++||||||||+++++++++.+
T Consensus 78 ~i~~vATsAvReA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~-~~~lviDIGGGStEl~~~~~~~~~~ 156 (496)
T PRK11031 78 QIRVVATATLRLAVNADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGA-DQRLVVDIGGASTELVTGTGAQATS 156 (496)
T ss_pred eEEEEEeHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCC-CCEEEEEecCCeeeEEEecCCceee
Confidence 799999999999999999999999999999999999999999999999988753 4589999999999999999999999
Q ss_pred eeeeehhHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHhchhhHHHHhcCCeEEEeechhHHHHHHHHHcCCCcccccCC
Q 014133 168 CESVNLGHVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVSGYDRDFVDNV 246 (430)
Q Consensus 168 ~~Sl~lG~vrl~e~f~~~~-~~~~~~~~l~~~i~~~l~~~~~~~~l~~~~~~~lig~gGt~~~l~~~~~~~~~~~~~~~~ 246 (430)
++|+|+|+|||+++|..++ +++.+...+++|+++.+.. +.++++..++..+||+|||+++++++.... .
T Consensus 157 ~~Sl~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~~~l~~--~~~~~~~~~~~~lig~gGt~~~la~~~~~~-~------- 226 (496)
T PRK11031 157 LFSLSMGCVTWLERYFKDRNLTQENFDAAEKAAREVLRP--VADELREHGWQVCVGASGTVQALQEIMMAQ-G------- 226 (496)
T ss_pred eeEEeccchHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH--HHHHHhhcCCCEEEEEChHHHHHHHHHHhc-C-------
Confidence 9999999999999998775 5777788899999999974 344555445667999999999999975321 1
Q ss_pred CCCCCCcccceeCHHHHHHHHHHHHcCCCChHHHhhcCCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHH
Q 014133 247 GDFGGCKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVA 326 (430)
Q Consensus 247 ~~~~~~~~~~~i~~~~l~~~~~~l~~~~~~~~e~~~~~gl~~~Rad~i~~g~~il~~l~~~~~~~~i~vs~~glreGll~ 326 (430)
.+ ..++.++++++++++..++.+ ++.+++||+++|+|+|+||++|+.++|+.++++++++|++|||||+++
T Consensus 227 ------~~-~~i~~~~l~~l~~~l~~~~~~--~~~~~~gl~~~Radii~~g~~Il~~i~~~~~~~~i~vs~~glREGl~~ 297 (496)
T PRK11031 227 ------MD-ERITLAKLQQLKQRAIQCGRL--EELEIEGLTLERALVFPSGLAILIAIFEELNIESMTLAGGALREGLVY 297 (496)
T ss_pred ------CC-CcCCHHHHHHHHHHHhcCCHH--HHhcCCCCCccHHHHHHHHHHHHHHHHHHcCcCEEEECCchHHHHHHH
Confidence 01 259999999999999999988 999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCcchHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHH
Q 014133 327 DSLAKVFDGYDLNANARWRSVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAAC 406 (430)
Q Consensus 327 ~~l~~~~~~~~~~~~~~~~s~~~la~ry~~~~~~~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa 406 (430)
+++.+. ...+++..|+.+++.||++|. .|+++|+++|++|||||++.|+ +++++|+||++||
T Consensus 298 ~~~~~~-----~~~d~~~~s~~~l~~ry~~d~--~ha~~v~~~a~~Lf~~l~~~~~-----------l~~~~~~LL~~Aa 359 (496)
T PRK11031 298 GMLHLP-----VEQDIRSRTLRNIQRRFQIDT--EQAQRVAKLADNFLQQVENEWH-----------LEPRSRELLISAC 359 (496)
T ss_pred HHHhhh-----cccchHHHHHHHHHHHcCcCH--HHHHHHHHHHHHHHHhhhhhcC-----------CChHHHHHHHHHH
Confidence 998763 124667789999999999987 9999999999999999999996 4568899999999
Q ss_pred HHhhhhcccCCCCcchhhhhhhcC
Q 014133 407 LLHNIGHFTSKKGYHKQSCHIIMV 430 (430)
Q Consensus 407 ~LhdiG~~I~~~~h~~Hs~yiI~~ 430 (430)
+|||||+|||+++||+||||||+|
T Consensus 360 ~LhdiG~~I~~~~~~~Hs~yiI~~ 383 (496)
T PRK11031 360 QLHEIGLSVDFKQAPQHAAYLVRN 383 (496)
T ss_pred HHHhcCCccCCCccchHHHHHHhc
Confidence 999999999999999999999987
No 2
>PRK10854 exopolyphosphatase; Provisional
Probab=100.00 E-value=1.6e-87 Score=701.73 Aligned_cols=380 Identities=26% Similarity=0.406 Sum_probs=343.3
Q ss_pred CCeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEE
Q 014133 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRA 91 (430)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (430)
++.+|||||||||+||+|+++. ++.++++++.|++||||++++.+|.|++++|+|++++|++|+++|++|+|+ ++++
T Consensus 10 ~~~~A~IDIGSNSirL~I~e~~-~~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~~~~~~v~--~v~~ 86 (513)
T PRK10854 10 PQEFAAVDLGSNSFHMVIARVV-DGAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAERLQGFSPA--NVCI 86 (513)
T ss_pred CCEEEEEEeccchheEEEEEec-CCcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCC--eEEE
Confidence 3589999999999999999986 578999999999999999999999999999999999999999999999995 7999
Q ss_pred EeehHhhhcCChHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeCCeEeeeeee
Q 014133 92 VATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESV 171 (430)
Q Consensus 92 vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~Sl 171 (430)
|||+|+|+|+|+++|+++|+++||++|+||||+|||+|+|+||.+.++. .++++++||||||||+++++++++.+..|+
T Consensus 87 vATsAlReA~N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~-~~~~lvvDIGGGStEl~~~~~~~~~~~~S~ 165 (513)
T PRK10854 87 VGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPE-KGRKLVIDIGGGSTELVIGENFEPILVESR 165 (513)
T ss_pred EehHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCC-CCCeEEEEeCCCeEEEEEecCCCeeEeEEE
Confidence 9999999999999999999999999999999999999999999998874 356899999999999999999999999999
Q ss_pred ehhHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHhchhhHHHHhcCCeEEEeechhHHHHHHHHHcCCCcccccCCCCCC
Q 014133 172 NLGHVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVSGYDRDFVDNVGDFG 250 (430)
Q Consensus 172 ~lG~vrl~e~f~~~~-~~~~~~~~l~~~i~~~l~~~~~~~~l~~~~~~~lig~gGt~~~l~~~~~~~~~~~~~~~~~~~~ 250 (430)
|+|+||+++.|...+ +++++...+++++++++...++ ..+..++..+||+|||+++++++.... .
T Consensus 166 ~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~lig~gGT~r~la~i~~~~-~----------- 231 (513)
T PRK10854 166 RMGCVSFAQLYFPGGVISKENFQRARLAAAQKLETLAW--QYRIQGWNVALGASGTIKAAHEVLVEM-G----------- 231 (513)
T ss_pred ecceeeHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHH--HhhhcCCCEEEEechHHHHHHHHHHhC-C-----------
Confidence 999999999988764 5777788899999999975322 112234457999999999999976321 1
Q ss_pred CCcccceeCHHHHHHHHHHHHcCCCChHHHhhcCCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHHHHHh
Q 014133 251 GCKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADSLA 330 (430)
Q Consensus 251 ~~~~~~~i~~~~l~~~~~~l~~~~~~~~e~~~~~gl~~~Rad~i~~g~~il~~l~~~~~~~~i~vs~~glreGll~~~l~ 330 (430)
.+.+.|+.++|+++++++.+++.+ ++.+.+||+++|+|+|+||++|+.++|+.+++++++||+.|||||++++++.
T Consensus 232 --~~~~~i~~~~l~~l~~~l~~~~~~--~r~~~~gl~~~Rad~I~~g~~il~~i~~~~~~~~i~vs~~gLReGll~~~~~ 307 (513)
T PRK10854 232 --EKDGLITPERLEMLVKEVLKHKNF--AALSLPGLSEERKTVFVPGLAILCGVFDALAIRELRLSDGALREGVLYEMEG 307 (513)
T ss_pred --CCCCccCHHHHHHHHHHHHCCCHH--HHHhCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHh
Confidence 123579999999999999999988 9999999999999999999999999999999999999999999999999975
Q ss_pred hhcCCCCCCcchHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHhhhhcc-ccchhhhhhcccCcchHHHHHHHHHHh
Q 014133 331 KVFDGYDLNANARWRSVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCDK-LYNNQVKLIASFEDKDLEYLEAACLLH 409 (430)
Q Consensus 331 ~~~~~~~~~~~~~~~s~~~la~ry~~~~~~~h~~~V~~~a~~LFd~l~~~h~-l~~~~~~~~~~l~~~~r~lL~~Aa~Lh 409 (430)
+. ...|++.+|++++++||++|. .|+++|+++|++|||||++.|+ + +++++|+||++||+||
T Consensus 308 ~~-----~~~d~~~~s~~~la~ry~~d~--~ha~~V~~~a~~LFd~l~~~h~~~----------~~~~~~~LL~~Aa~Lh 370 (513)
T PRK10854 308 RF-----RHQDIRSRTAKSLANHYNIDR--EQARRVLETTMQLYEQWREQNPKL----------AHPQLEALLKWAAMLH 370 (513)
T ss_pred hc-----ccccHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHhhhhhhccc----------CCHHHHHHHHHHHHHH
Confidence 42 124778899999999999987 9999999999999999999983 2 3568899999999999
Q ss_pred hhhcccCCCCcchhhhhhhcC
Q 014133 410 NIGHFTSKKGYHKQSCHIIMV 430 (430)
Q Consensus 410 diG~~I~~~~h~~Hs~yiI~~ 430 (430)
|||+|||+++||+||||||+|
T Consensus 371 diG~~I~~~~~~~Hs~yiI~~ 391 (513)
T PRK10854 371 EVGLNINHSGLHRHSAYILQN 391 (513)
T ss_pred hcCCccCCCCcchhHHHHHhc
Confidence 999999999999999999987
No 3
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-83 Score=655.57 Aligned_cols=384 Identities=35% Similarity=0.516 Sum_probs=348.5
Q ss_pred CCeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEE
Q 014133 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRA 91 (430)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (430)
.+++|+|||||||+||+|+++.+ +.+++++++|+.||||++++.+|.|++++|+|+++||++|+++++.++++ ++++
T Consensus 2 ~~~~A~IDiGSNS~rlvV~~~~~-~~~~~l~~~k~~vrLgegl~~~g~L~~eai~R~~~aL~~f~e~~~~~~~~--~v~~ 78 (492)
T COG0248 2 ARRVAAIDLGSNSFRLVVAEITP-GSFQVLFREKRIVRLGEGLDATGNLSEEAIERALSALKRFAELLDGFGAE--EVRV 78 (492)
T ss_pred CceEEEEEecCCeEEEEEEeccC-CccchhhhhhhheehhcCccccCCcCHHHHHHHHHHHHHHHHHHhhCCCC--EEEE
Confidence 36899999999999999999886 88999999999999999999999999999999999999999999999994 7999
Q ss_pred EeehHhhhcCChHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeCCeEeeeeee
Q 014133 92 VATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESV 171 (430)
Q Consensus 92 vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~Sl 171 (430)
|||+|+|+|+|+++|+.+++++||++|+||||+|||||+|+||.++++. ..+++++||||||||++++++.++....|+
T Consensus 79 vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~-~~~~lv~DIGGGStEl~~g~~~~~~~~~Sl 157 (492)
T COG0248 79 VATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPR-KGDGLVIDIGGGSTELVLGDNFEIGLLISL 157 (492)
T ss_pred ehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCC-CCCEEEEEecCCeEEEEEecCCccceeEEe
Confidence 9999999999999999999999999999999999999999999999986 567999999999999999999999999999
Q ss_pred ehhHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHhchhhHHHHhcCCeEEEeechhHHHHHHHHH--cCCCcccccCCCC
Q 014133 172 NLGHVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVV--SGYDRDFVDNVGD 248 (430)
Q Consensus 172 ~lG~vrl~e~f~~~~-~~~~~~~~l~~~i~~~l~~~~~~~~l~~~~~~~lig~gGt~~~l~~~~~--~~~~~~~~~~~~~ 248 (430)
|+|++||+++|..++ |++++...++++++..+++.++ ......+..+||+|||+|+|+++.+ ..||...+
T Consensus 158 ~~G~v~lt~~~~~~~~~s~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~vg~sGT~r~la~l~~~~~~y~~~~~----- 230 (492)
T COG0248 158 PLGCVRLTERFFPDDPISEENFAKARDAVREELEEIAK--EYRIAGWAGLVGTSGTIRALAKLHMAQGSYPLRVL----- 230 (492)
T ss_pred ecceEEeehhhcCCCCCCHHHHHHHHHHHHHHHHhhhH--HHHhhhhccEEEccHHHHHHHHHHHhcccCChhhc-----
Confidence 999999999999874 5888899999999999987432 2222234458999999999999864 45765444
Q ss_pred CCCCcccceeCHHHHHHHHHHHHcCCCChHHHhhcCCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHHHH
Q 014133 249 FGGCKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADS 328 (430)
Q Consensus 249 ~~~~~~~~~i~~~~l~~~~~~l~~~~~~~~e~~~~~gl~~~Rad~i~~g~~il~~l~~~~~~~~i~vs~~glreGll~~~ 328 (430)
|+|.|+.+++.++++++..++.+ ++.+.+|++++|+|+|++|++|+.++|+.++++++++|+.|||||+++++
T Consensus 231 -----~~~~it~~~l~~~~~~l~~~~~~--~~~~~~gl~~~Ra~vi~~G~~il~a~~~~l~~~~~~vs~~glREG~l~~~ 303 (492)
T COG0248 231 -----HGYEITAEELEKLLERLIRMTSE--ERLKLEGLSKDRADVILAGAAILEAVFEALSIERMIVSDGGLREGVLYDL 303 (492)
T ss_pred -----cCceEcHHHHHHHHHHHHhCChH--hHHhccCCChhhhHhhhhHHHHHHHHHHhcCcceEEeccccccchHHHHH
Confidence 46899999999999999999987 99999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCCcchHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHH
Q 014133 329 LAKVFDGYDLNANARWRSVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLL 408 (430)
Q Consensus 329 l~~~~~~~~~~~~~~~~s~~~la~ry~~~~~~~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~L 408 (430)
+.+.... +++.+++..++.+|.++. .|+.+|+++|.++|+|+.+.+.. .+++.+++ |++||+|
T Consensus 304 l~~~~~~-----~~r~~~~~~~~~~~~~~~--~~~~~v~~~a~~l~~~~~~~~~~---------~~~~~~~~-l~~Aa~L 366 (492)
T COG0248 304 LLRFEAE-----DIRKRSLLELALRYLIDL--AQAKRVAKLALELFDQLLALLKI---------DEEAEERL-LEAAAML 366 (492)
T ss_pred hhhhhhh-----hhhccHHHHHHHHhhhhH--HhHhhHHHHHHHHHHHhhhcccc---------CCChHHHH-HHHHHHH
Confidence 8764322 366778999999999887 99999999999999999987652 34556667 9999999
Q ss_pred hhhhcccCCCCcchhhhhhhcC
Q 014133 409 HNIGHFTSKKGYHKQSCHIIMV 430 (430)
Q Consensus 409 hdiG~~I~~~~h~~Hs~yiI~~ 430 (430)
||||++||+++||+||+|+|+|
T Consensus 367 h~iG~~i~~~~~~~hsayiI~~ 388 (492)
T COG0248 367 HEIGLNISHSGHHKHSAYIIRN 388 (492)
T ss_pred HHhccccCcccHHHHHHHHHHc
Confidence 9999999999999999999986
No 4
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=100.00 E-value=1.4e-65 Score=503.60 Aligned_cols=296 Identities=33% Similarity=0.497 Sum_probs=269.7
Q ss_pred eEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEe
Q 014133 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (430)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (430)
.+|+|||||||+||.|+++. ++.++++++.+.+||||++++.+|.|++++|++++++|++|++++++|+++ ++++||
T Consensus 1 ~~AvIDiGSNsirl~I~~~~-~~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~~~~~~v~--~i~~va 77 (300)
T TIGR03706 1 PIAAIDIGSNSVRLVIARGV-EGSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAELLRGFPVD--EVRAVA 77 (300)
T ss_pred CeEEEEecCCeeeEEEEEec-CCcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCC--eEEEEE
Confidence 37999999999999999986 567999999999999999999999999999999999999999999999994 799999
Q ss_pred ehHhhhcCChHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeCCeEeeeeeeeh
Q 014133 94 TAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNL 173 (430)
Q Consensus 94 TsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~Sl~l 173 (430)
|+|+|+|+|+++|+++|+++||++++||||+|||+|+|+|+...++.. +++++||||||||+++++++++.+++|+|+
T Consensus 78 Tsa~R~A~N~~~~~~~i~~~tgi~i~visg~eEa~l~~~gv~~~~~~~--~~~v~DiGGGSte~~~~~~~~~~~~~Sl~l 155 (300)
T TIGR03706 78 TAALRDAKNGPEFLREAEAILGLPIEVISGEEEARLIYLGVAHTLPIA--DGLVVDIGGGSTELILGKDFEPGEGVSLPL 155 (300)
T ss_pred cHHHHcCCCHHHHHHHHHHHHCCCeEEeChHHHHHHHHHHHHhCCCCC--CcEEEEecCCeEEEEEecCCCEeEEEEEcc
Confidence 999999999999999999999999999999999999999999888643 369999999999999999999999999999
Q ss_pred hHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHhchhhHHHHhcCCeEEEeechhHHHHHHHHHc--CCCcccccCCCCCC
Q 014133 174 GHVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVS--GYDRDFVDNVGDFG 250 (430)
Q Consensus 174 G~vrl~e~f~~~~-~~~~~~~~l~~~i~~~l~~~~~~~~l~~~~~~~lig~gGt~~~l~~~~~~--~~~~~~~~~~~~~~ 250 (430)
|++||+++|...+ |++++.+.+++|+++.+... ++++..+...+||+|||+++++++... .|+..
T Consensus 156 G~vrl~e~f~~~~~~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~lig~gGt~~~la~~~~~~~~~~~~--------- 223 (300)
T TIGR03706 156 GCVRLTEQFFPDGPISKKSLKQARKAAREELASL---KWLKKGGWRPLYGVGGTWRALARIHQAQHGYPLH--------- 223 (300)
T ss_pred ceEEhHHhhCCCCCCCHHHHHHHHHHHHHHHHHh---HHHhhCCCCEEEEehHHHHHHHHHHHhcccCCCc---------
Confidence 9999999998764 57788899999999999743 344444455799999999999998643 34432
Q ss_pred CCcccceeCHHHHHHHHHHHHcCCCChHHHhhcCCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHHHHH
Q 014133 251 GCKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADSL 329 (430)
Q Consensus 251 ~~~~~~~i~~~~l~~~~~~l~~~~~~~~e~~~~~gl~~~Rad~i~~g~~il~~l~~~~~~~~i~vs~~glreGll~~~l 329 (430)
..|++.+++++|++++++|..++.+ ++.+.+|++++|+|+|+||++++.++|+.+++++++||+.|||||++++++
T Consensus 224 -~~~~~~l~~~~~~~~~~~l~~~~~~--~r~~~~gl~~~Rad~i~~g~~i~~~l~~~~~~~~i~vs~~glreGl~~~~~ 299 (300)
T TIGR03706 224 -GLHGYTITAEGLLELLEELIKLSRE--ERLKLPGLSKDRADILPGGAAVLEELFRALGIEQMVFSRGGLREGVLYELL 299 (300)
T ss_pred -CccCCEECHHHHHHHHHHHHcCCHH--HHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEECCchHHHHHHHhhc
Confidence 3456789999999999999999998 999999999999999999999999999999999999999999999998864
No 5
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=100.00 E-value=1.1e-58 Score=452.08 Aligned_cols=282 Identities=35% Similarity=0.586 Sum_probs=247.3
Q ss_pred eEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHH
Q 014133 28 LIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFV 107 (430)
Q Consensus 28 ~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl 107 (430)
+|++++ ++.++++++.+++||||++++.+|.|++++|++++++|++|++++++|+| ++++||||+|+|+|+|+++|+
T Consensus 1 ~I~~~~-~~~~~~l~~~~~~vrLg~~~~~~g~i~~e~i~r~~~~L~~f~~~~~~~~v--~~i~~vATsA~R~A~N~~~~~ 77 (285)
T PF02541_consen 1 VIAEVK-DGKFKILEEEKEIVRLGEGVFETGRISEEAIERAIDALKRFKEILKDYGV--EKIRAVATSALREAKNSDEFL 77 (285)
T ss_dssp EEEEEE-TTEEEEEEEEEEE--TTTTHHHHSSB-HHHHHHHHHHHHHHHHHHHHTTG--SEEEEEEEHHHHHSTTHHHHH
T ss_pred CEEEeC-CCCeEEeeeceEEEEcccccccCCCcCHHHHHHHHHHHHHHHHHHHHCCC--CEEEEEhhHHHHhCcCHHHHH
Confidence 589987 56699999999999999999999999999999999999999999999999 489999999999999999999
Q ss_pred HHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeCCeEeeeeeeehhHHHHHHhhcCCC-
Q 014133 108 ECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFGTCS- 186 (430)
Q Consensus 108 ~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~Sl~lG~vrl~e~f~~~~- 186 (430)
++|+++||++|+||||+|||+|+|+|+.+.+ .+.++++++||||||||+++++++++.++.|+|+|++|+++.|...+
T Consensus 78 ~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l-~~~~~~lviDIGGGStEl~~~~~~~~~~~~Sl~lG~vrl~e~~~~~~~ 156 (285)
T PF02541_consen 78 DRIKKETGIDIEIISGEEEARLSFLGVLSSL-PPDKNGLVIDIGGGSTELILFENGKVVFSQSLPLGAVRLTERFFKSDP 156 (285)
T ss_dssp HHHHHHHSS-EEEE-HHHHHHHHHHHHHHHS-TTTSSEEEEEEESSEEEEEEEETTEEEEEEEES--HHHHHHHHSGCSS
T ss_pred HHHHHHhCCceEEecHHHHHHHHHHHHHhhc-cccCCEEEEEECCCceEEEEEECCeeeEeeeeehHHHHHHHHHhccCc
Confidence 9999999999999999999999999999988 44677999999999999999999999999999999999999998775
Q ss_pred CCHHHHHHHHHHHHHHHHhchhhHHHHhcC-CeEEEeechhHHHHHHHHHcCCCcccccCCCCCCCCcccceeCHHHHHH
Q 014133 187 GNFEEVLKMREYVRMVILEFGLVEKVKESG-FEVAVGSSGTIRAIEKAVVSGYDRDFVDNVGDFGGCKRDWRLSRGELKG 265 (430)
Q Consensus 187 ~~~~~~~~l~~~i~~~l~~~~~~~~l~~~~-~~~lig~gGt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 265 (430)
|++++.+.+++|+++.+....+ ...... ...++|++|+.++++.+.. .++ ..++.|+.++|.+
T Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~-------------~~~~~i~~~~l~~ 220 (285)
T PF02541_consen 157 PTAEELEKLREFIRKELEELKW--EFPKGGGTIRIIGTSGTIRALYPLKK-IHG-------------KEGYEITREDLEE 220 (285)
T ss_dssp -HHHHHHHHHHHHHHHHCTTHH--HHHHHCHHCEEECCCHHHHHHHHHHH-HTT-------------CSSCEEEHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH--HhhhcCCceeeecHHHHHHHHHHHHH-hcC-------------CCCceECHHHHHH
Confidence 4667778899999999986432 222223 4678999999999887642 111 0147999999999
Q ss_pred HHHHHHcCCCChHHHhhcCCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHHHHHhh
Q 014133 266 IVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADSLAK 331 (430)
Q Consensus 266 ~~~~l~~~~~~~~e~~~~~gl~~~Rad~i~~g~~il~~l~~~~~~~~i~vs~~glreGll~~~l~~ 331 (430)
+++++..++.+ ++.+.+|++++|+|+|+||++|+..+|+.+++++++||+.|||||++++++.+
T Consensus 221 ~~~~l~~~~~e--e~~~~~gl~~~Ra~~i~~g~~i~~~l~~~~~~~~i~vs~~glreG~l~~~l~~ 284 (285)
T PF02541_consen 221 LLEKLSKMSPE--ERAKIPGLSPDRADIILPGALILKALLEAFGAEEIIVSDYGLREGLLYDMLLK 284 (285)
T ss_dssp HHHHHHTSSHH--HHHTSTTSHHCHHTTHHHHHHHHHHHHHHHTHSEEEEESEEHHHHHHHHHHHH
T ss_pred HHHHHHcCChH--HHHHccCCCHHHHHhHHHHHHHHHHHHHHcCCCEEEECCCchHHHHHHHHhcc
Confidence 99999999998 99999999999999999999999999999999999999999999999999865
No 6
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.70 E-value=1e-15 Score=147.95 Aligned_cols=151 Identities=23% Similarity=0.250 Sum_probs=120.6
Q ss_pred CCCCCeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHc-CCCCc
Q 014133 9 QIPQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSH-NISRD 87 (430)
Q Consensus 9 ~~~~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~-~v~~~ 87 (430)
+...+++.+||||||++|++|++... ..+.+.+..++.+|.|. +.+ ++++.++|+.|++.++.+ +++
T Consensus 20 ~~~~~~~~~iDiGSssi~~vv~~~~~-~~~~~~~~~~~~vr~G~-i~d--------i~~a~~~i~~~~~~ae~~~g~~-- 87 (267)
T PRK15080 20 ATESPLKVGVDLGTANIVLAVLDEDG-QPVAGALEWADVVRDGI-VVD--------FIGAVTIVRRLKATLEEKLGRE-- 87 (267)
T ss_pred CCCCCEEEEEEccCceEEEEEEcCCC-CEEEEEeccccccCCCE-Eee--------HHHHHHHHHHHHHHHHHHhCCC--
Confidence 33567899999999999999997642 25778888888889887 433 999999999999999887 774
Q ss_pred cEEEEeehHhhhcC---ChHHHHHHHHHHhCCcee-eeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeCC
Q 014133 88 HTRAVATAAVRAAE---NKDEFVECVREKVGFEVD-VLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRG 163 (430)
Q Consensus 88 ~i~~vATsA~R~A~---N~~~fl~~i~~~tGl~i~-vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~ 163 (430)
+..|+| +++.+. |+..+. ++.++.|+++. ++++. .|--.++ ... ..+++|||||+|+++++.+|
T Consensus 88 -i~~v~~-~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~-~A~a~~~------~~~--~~~vvDIGggtt~i~v~~~g 155 (267)
T PRK15080 88 -LTHAAT-AIPPGTSEGDPRAII-NVVESAGLEVTHVLDEP-TAAAAVL------GID--NGAVVDIGGGTTGISILKDG 155 (267)
T ss_pred -cCeEEE-EeCCCCCchhHHHHH-HHHHHcCCceEEEechH-HHHHHHh------CCC--CcEEEEeCCCcEEEEEEECC
Confidence 666777 788877 888877 66778999999 55544 4333222 111 26999999999999999999
Q ss_pred eEeeeeeeehhHHHHHHhhc
Q 014133 164 KVVFCESVNLGHVSLSEKFG 183 (430)
Q Consensus 164 ~~~~~~Sl~lG~vrl~e~f~ 183 (430)
++.++.++|+|.-.+++...
T Consensus 156 ~~~~~~~~~~GG~~it~~Ia 175 (267)
T PRK15080 156 KVVYSADEPTGGTHMSLVLA 175 (267)
T ss_pred eEEEEecccCchHHHHHHHH
Confidence 99999999999999998754
No 7
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=98.99 E-value=3.4e-09 Score=109.63 Aligned_cols=147 Identities=24% Similarity=0.299 Sum_probs=88.9
Q ss_pred CeEEEEEecccceeeeEEEEeC--CCcEEEEEeecc------eeeccCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHcC
Q 014133 13 TLFASIDMGTSSFKLLIIRAYP--NGKFLTIDTLKQ------PVILGRDLSSSCSISTQSQARSVESLLMFRD-IIQSHN 83 (430)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~--~~~~~~i~~~k~------~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~-~~~~~~ 83 (430)
....|||.||.+.|+.||+... .....++...+. .+..|-..+. -+++.+...+.-|-.+.. ....-.
T Consensus 8 ~y~vviDAGSsgsR~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~pgls~~~---~~~~~~~~~l~~ll~~a~~~ip~~~ 84 (434)
T PF01150_consen 8 KYGVVIDAGSSGSRVHVYKWRCRDNNSLPVVPLVEQSKPVFKKVEPGLSSFA---DNPEKAAESLQPLLDFAKSVIPKSQ 84 (434)
T ss_dssp EEEEEEEEESSEEEEEEEEEEEEECCGCEEEEEEEEBEEHCCHHCCHHHHHT---TTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEcCCCCceEEEEEEecCCCccCCccccceeccchhhcccchHHHhC---CChHHHHHHHHHHHHHHHhhCCHHH
Confidence 3457999999999999999864 122223222221 1222211111 123445555555444432 222222
Q ss_pred CCCccEEEEeehHhhhc--CChHHHHHHHHHH----hCCc-----eeeeChHHHHHHHHhhhhccCC---CC------CC
Q 014133 84 ISRDHTRAVATAAVRAA--ENKDEFVECVREK----VGFE-----VDVLTGEQEAKFVYMGVLQFLP---VF------DR 143 (430)
Q Consensus 84 v~~~~i~~vATsA~R~A--~N~~~fl~~i~~~----tGl~-----i~vIsg~eEA~l~~~gv~~~~~---~~------~~ 143 (430)
.+...|...||+.||.- .+++.+++.+++. +++. ++||||+||+.|.|++|-.-+. .. ..
T Consensus 85 ~~~tpi~l~ATAGmRlL~~~~~~~il~~~~~~l~~~~~f~~~~~~v~visG~eEg~y~WvtvNyl~g~l~~~~~~~~~~~ 164 (434)
T PF01150_consen 85 HSSTPIYLGATAGMRLLPEEQQEAILDEVRNYLRSSSPFPFRDSWVRVISGEEEGIYGWVTVNYLLGRLDSSGASKSPSN 164 (434)
T ss_dssp SCHEEEEEEE-HHHHTHHHHHHHHHHHHHHHCHHCHCTSSEEETTCEE--HHHHHHHHHHHHHHHTTTSSSSTEEEEESS
T ss_pred hCCeeEEEecccccEECChhhHHHHHHHHHHhhccCCCCccCccceEecCHHHhhHhHHHHHHHHhCccccccccCCCCc
Confidence 22235899999999964 5778888888863 3433 7999999999999999865332 11 24
Q ss_pred ceEEEEeCCCceEEEeeeC
Q 014133 144 LVLSVDIGGGSTEFVIGKR 162 (430)
Q Consensus 144 ~~lv~DIGGGStEl~~~~~ 162 (430)
..-++|+|||||||++.-+
T Consensus 165 t~g~lDlGGaStQIaf~~~ 183 (434)
T PF01150_consen 165 TVGALDLGGASTQIAFEPS 183 (434)
T ss_dssp -EEEEEE-SSEEEEEEEET
T ss_pred eEEEEecCCcceeeeeccC
Confidence 5789999999999998665
No 8
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=98.81 E-value=3.6e-07 Score=86.99 Aligned_cols=147 Identities=21% Similarity=0.302 Sum_probs=90.6
Q ss_pred EEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCCccEEEEeehH
Q 014133 18 IDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQS-HNISRDHTRAVATAA 96 (430)
Q Consensus 18 IDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~-~~v~~~~i~~vATsA 96 (430)
+||||+++++++.+.. ++.+-+. .+=.+...+|.|.+ ++.+-..|+.+++.++. .+.+..+ .+++..+
T Consensus 2 ~dig~~~ik~v~~~~~-~~~~~~~-------~~~~~~~~~g~I~d--~~~~~~~l~~l~~~a~~~~g~~~~~-vvisVP~ 70 (239)
T TIGR02529 2 VDLGTANIVIVVLDED-GQPVAGV-------MQFADVVRDGIVVD--FLGAVEIVRRLKDTLEQKLGIELTH-AATAIPP 70 (239)
T ss_pred CCcccceEEEEEEecC-CCEEEEE-------ecccccccCCeEEE--hHHHHHHHHHHHHHHHHHhCCCcCc-EEEEECC
Confidence 7999999999998765 3322221 12233344555543 34444455555544432 2432112 2344333
Q ss_pred hhhcCChHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeCCeEeeeeeeehhHH
Q 014133 97 VRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHV 176 (430)
Q Consensus 97 ~R~A~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~Sl~lG~v 176 (430)
-=...+++.+.+.+ +..|+++..+.-+-=|--.+++ + ...+++|||||+|.++++++|++.++.++|+|.-
T Consensus 71 ~~~~~~r~a~~~a~-~~aGl~~~~li~ep~Aaa~~~~----~----~~~~vvDiGggtt~i~i~~~G~i~~~~~~~~GG~ 141 (239)
T TIGR02529 71 GTIEGDPKVIVNVI-ESAGIEVLHVLDEPTAAAAVLQ----I----KNGAVVDVGGGTTGISILKKGKVIYSADEPTGGT 141 (239)
T ss_pred CCCcccHHHHHHHH-HHcCCceEEEeehHHHHHHHhc----C----CCcEEEEeCCCcEEEEEEECCeEEEEEeeecchH
Confidence 33334455555444 5579998776655544333222 1 1259999999999999999999999999999999
Q ss_pred HHHHhhcC
Q 014133 177 SLSEKFGT 184 (430)
Q Consensus 177 rl~e~f~~ 184 (430)
.+++.+..
T Consensus 142 ~it~~Ia~ 149 (239)
T TIGR02529 142 HMSLVLAG 149 (239)
T ss_pred HHHHHHHH
Confidence 99988743
No 9
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=98.64 E-value=7.6e-08 Score=95.28 Aligned_cols=149 Identities=20% Similarity=0.198 Sum_probs=95.1
Q ss_pred CCeEEEEEecccceeeeEEEEeCC--Cc-EEEEEeecceeeccCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHcCCCCc
Q 014133 12 QTLFASIDMGTSSFKLLIIRAYPN--GK-FLTIDTLKQPVILGRDLSSSC-SISTQSQARSVESLLMFRDIIQSHNISRD 87 (430)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~e~~~~--~~-~~~i~~~k~~vrLg~~~~~~g-~ls~e~i~r~~~~L~~f~~~~~~~~v~~~ 87 (430)
++...+||-||.+.|+.||..+.+ +. ++.-++.-..+.-|-..|.+. .=..++++.+++.-+.|.=. +....+
T Consensus 66 ~~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsfaddp~~aA~Sl~~LLd~A~~~vP~-~~~~kT-- 142 (453)
T KOG1385|consen 66 RQYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSFADDPEEAANSLRPLLDVAEAFVPR-EHWKKT-- 142 (453)
T ss_pred eEEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCcccccCCChHHHHHhHHHHHHHHHhhCCH-hHhccC--
Confidence 355689999999999999998854 32 222222223344444334321 11122333333333332210 122344
Q ss_pred cEEEEeehHhhhc--CChHHHHHHHHHHhC---------CceeeeChHHHHHHHHhhhhccCC---CC-CCceEEEEeCC
Q 014133 88 HTRAVATAAVRAA--ENKDEFVECVREKVG---------FEVDVLTGEQEAKFVYMGVLQFLP---VF-DRLVLSVDIGG 152 (430)
Q Consensus 88 ~i~~vATsA~R~A--~N~~~fl~~i~~~tG---------l~i~vIsg~eEA~l~~~gv~~~~~---~~-~~~~lv~DIGG 152 (430)
.|.+-||+.+|-- .-++.+++.|++..- =.|.|++|.+|.-|.|..+-..+. -+ ....-++|+||
T Consensus 143 Pi~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~GtdEGv~aWiTiN~Llg~L~~~~~~tvgv~DLGG 222 (453)
T KOG1385|consen 143 PIVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMDGTDEGVYAWITINYLLGTLGAPGHRTVGVVDLGG 222 (453)
T ss_pred ceEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceeeccCcccceeeeeehhhhhcccCCCCCCceEEEEcCC
Confidence 4899999999974 457889999988763 238899999999999998764332 11 34588999999
Q ss_pred CceEEEeeeCC
Q 014133 153 GSTEFVIGKRG 163 (430)
Q Consensus 153 GStEl~~~~~~ 163 (430)
||||+++.-..
T Consensus 223 GSTQi~f~p~~ 233 (453)
T KOG1385|consen 223 GSTQITFLPTF 233 (453)
T ss_pred ceEEEEEecCc
Confidence 99999987643
No 10
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=98.54 E-value=4.2e-07 Score=92.07 Aligned_cols=158 Identities=19% Similarity=0.270 Sum_probs=98.7
Q ss_pred EEEEEecccceeeeEEEEeC-CCc--EEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHH--HHHcCCCCccE
Q 014133 15 FASIDMGTSSFKLLIIRAYP-NGK--FLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDI--IQSHNISRDHT 89 (430)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~-~~~--~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~--~~~~~v~~~~i 89 (430)
=.|||-||...||-||.... +|. +.++...-..-.++-|+.+-+ =.++.....+.-|-+|++- =++.. ....+
T Consensus 11 giviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~~PGiSsfa-~nP~~a~~~l~pLlefA~~~IPk~~h-~~Tpl 88 (501)
T KOG1386|consen 11 GIVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKLGPGISSFA-DNPEGASVYLTPLLEFAKEHIPKEKH-KETPL 88 (501)
T ss_pred EEEEecCCCCceEEEEeecccCCCcccCccchhhcccccCCChhhhc-cChhhhHHHHHHHHHHHHhhCCHhhc-CCCCe
Confidence 36899999999999998654 333 222221111123333332212 2356666666666666542 11111 12358
Q ss_pred EEEeehHhhhc--CChHHHHHHHHHHh----CCc-----eeeeChHHHHHHHHhhhhccCC---C------CCCceEEEE
Q 014133 90 RAVATAAVRAA--ENKDEFVECVREKV----GFE-----VDVLTGEQEAKFVYMGVLQFLP---V------FDRLVLSVD 149 (430)
Q Consensus 90 ~~vATsA~R~A--~N~~~fl~~i~~~t----Gl~-----i~vIsg~eEA~l~~~gv~~~~~---~------~~~~~lv~D 149 (430)
+..|||.||-- .+.+.+++-+..-+ ++. ++||||.||+.|+|.++-..+. . ..+.+-++|
T Consensus 89 ~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~~NY~LG~f~~~~~~~~~~~T~G~lD 168 (501)
T KOG1386|consen 89 FLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIAANYLLGRFGKKNRWDSRKETFGALD 168 (501)
T ss_pred EEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHHHHHHHHhccccCcccCCcceeeeEe
Confidence 99999999975 56677766655433 322 8999999999999999864332 1 234578999
Q ss_pred eCCCceEEEeeeCCe-----Eeeeeeeehh
Q 014133 150 IGGGSTEFVIGKRGK-----VVFCESVNLG 174 (430)
Q Consensus 150 IGGGStEl~~~~~~~-----~~~~~Sl~lG 174 (430)
+||.||++++.-..+ ......+.+|
T Consensus 169 lGGAS~QItFe~~~~~e~~~~~~~~~i~~G 198 (501)
T KOG1386|consen 169 LGGASTQITFEPPNQQEEVPKENLQTINYG 198 (501)
T ss_pred cCCceeEEEEecCccccccchhhhhheecC
Confidence 999999999865522 1234556667
No 11
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.35 E-value=2e-05 Score=81.33 Aligned_cols=166 Identities=14% Similarity=0.201 Sum_probs=95.3
Q ss_pred CCeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCCcc-E
Q 014133 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQS-HNISRDH-T 89 (430)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~-~~v~~~~-i 89 (430)
+++++++||||.+++++|.++.+++.++++--...+ ..++ +.|.|.+ ++.+.+++++-.+.++. .|++..+ +
T Consensus 7 ~~~i~~lDIGsskv~~vv~~~~~~~~~~i~g~~~~~---s~gi-~~G~I~d--~~~~~~aI~~av~~ae~~~g~~i~~v~ 80 (420)
T PRK09472 7 RKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCP---SRGM-DKGGVND--LESVVKCVQRAIDQAELMADCQISSVY 80 (420)
T ss_pred CCEEEEEEcccceEEEEEEEEcCCCCEEEEEEEEcc---CCCc-cCCEEEc--HHHHHHHHHHHHHHHHHHhCCcccEEE
Confidence 468999999999999999998777778888666555 3444 4566654 33334444443333322 1222222 3
Q ss_pred EEEeehHhhhc------------CChHHHHHHHHHH---------------------------------h----CCceee
Q 014133 90 RAVATAAVRAA------------ENKDEFVECVREK---------------------------------V----GFEVDV 120 (430)
Q Consensus 90 ~~vATsA~R~A------------~N~~~fl~~i~~~---------------------------------t----Gl~i~v 120 (430)
.+++...++-- -+.+++-+.++.. . ..++.+
T Consensus 81 v~i~g~~v~~~~~~~~~~~~~~~I~~~dv~~~~~~a~~~~~~~~~~i~~~~p~~~~vD~~~~v~~P~g~~g~~l~~~v~l 160 (420)
T PRK09472 81 LALSGKHISCQNEIGMVPISEEEVTQEDVENVVHTAKSVRVRDEHRILHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHL 160 (420)
T ss_pred EEecCcceEEEeeeEEEEcCCCeeCHHHHHHHHHHhhccCCCCCCEEEEEeceeEEECCCCCcCCCCCCcccEEEEEEEE
Confidence 33332221110 0112222211111 0 123344
Q ss_pred eChHHHHHHHHhhhhc--cC------------------CC-CCCceEEEEeCCCceEEEeeeCCeEeeeeeeehhHHHHH
Q 014133 121 LTGEQEAKFVYMGVLQ--FL------------------PV-FDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLS 179 (430)
Q Consensus 121 Isg~eEA~l~~~gv~~--~~------------------~~-~~~~~lv~DIGGGStEl~~~~~~~~~~~~Sl~lG~vrl~ 179 (430)
+.+..+.-..+..+.. ++ +. .+...+++|||||+|+++++++|.+.++.++|+|.-.++
T Consensus 161 v~~~~~~~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~~~~i~~GG~~it 240 (420)
T PRK09472 161 ITCHNDMAKNIVKAVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVT 240 (420)
T ss_pred EEEchHHHHHHHHHHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEEEEeeeechHHHHH
Confidence 5555444433333221 11 11 134589999999999999999999999999999999888
Q ss_pred Hhhc
Q 014133 180 EKFG 183 (430)
Q Consensus 180 e~f~ 183 (430)
+...
T Consensus 241 ~dIa 244 (420)
T PRK09472 241 SDIA 244 (420)
T ss_pred HHHH
Confidence 7654
No 12
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=98.23 E-value=4.7e-05 Score=77.26 Aligned_cols=163 Identities=15% Similarity=0.260 Sum_probs=93.6
Q ss_pred EEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HcCCCCcc-EEEE
Q 014133 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQ-SHNISRDH-TRAV 92 (430)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~-~~~v~~~~-i~~v 92 (430)
+.+|||||.++++++.+..+++.++++.....+.+ ++ ..|.|-+ ++.+.+++++..+.++ ..+++..+ +.++
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~---gi-~~G~I~d--~~~~~~~i~~al~~~e~~~~~~i~~v~~~v 75 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSR---GI-KKGVIND--IEAAVGSIQRAIEAAELMAGCEIRSVIVSI 75 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCC---Cc-cCcEEEc--HHHHHHHHHHHHHHHHHHhCCcccEEEEEE
Confidence 67999999999999999876666888765555432 33 4566654 3444444444433322 13444222 2222
Q ss_pred eehHhhhc------------CChHHHHHHHHHHh-------------------------------------CCceeeeCh
Q 014133 93 ATAAVRAA------------ENKDEFVECVREKV-------------------------------------GFEVDVLTG 123 (430)
Q Consensus 93 ATsA~R~A------------~N~~~fl~~i~~~t-------------------------------------Gl~i~vIsg 123 (430)
+...++-- -+.+++-+.++.+. ..++.++..
T Consensus 76 ~g~~v~~~~~~~~i~~~~~~i~~~di~~~~~~~~~~~~~~~~~il~~~~~~~~vD~~~~~~~p~g~~~~~l~~~v~lva~ 155 (371)
T TIGR01174 76 SGAHIKSQNSIGVVAIKDKEVTQEDIERVLETAKAVAIPNDQEILHVIPQEYILDDQEGIKNPLGMSGVRLEVEVHIITG 155 (371)
T ss_pred cccceEEEeeeEEEEcCCCeeCHHHHHHHHHHhhcccCCCCCEEEEEeceeEEECCCCCcCCCCCCeeeEEEEEEEEEEE
Confidence 22222111 22334433333221 012333444
Q ss_pred HHHHHHHHhhhhc--c-----------------C-C-CCCCceEEEEeCCCceEEEeeeCCeEeeeeeeehhHHHHHHhh
Q 014133 124 EQEAKFVYMGVLQ--F-----------------L-P-VFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF 182 (430)
Q Consensus 124 ~eEA~l~~~gv~~--~-----------------~-~-~~~~~~lv~DIGGGStEl~~~~~~~~~~~~Sl~lG~vrl~e~f 182 (430)
..+.-..+.-+.. + + + ..+...+++|||||+|.++.+.+|.+.+..++|+|.-.+++..
T Consensus 156 ~~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~~~~i~~GG~~it~~i 235 (371)
T TIGR01174 156 SSTILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRYTKVIPIGGNHITKDI 235 (371)
T ss_pred EHHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEEEeeecchHHHHHHHH
Confidence 4444333332221 0 0 1 1134589999999999999999999999999999999888765
Q ss_pred c
Q 014133 183 G 183 (430)
Q Consensus 183 ~ 183 (430)
.
T Consensus 236 ~ 236 (371)
T TIGR01174 236 A 236 (371)
T ss_pred H
Confidence 3
No 13
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.15 E-value=0.00055 Score=68.63 Aligned_cols=164 Identities=21% Similarity=0.276 Sum_probs=93.8
Q ss_pred CCeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcc-EE
Q 014133 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDH-TR 90 (430)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~-i~ 90 (430)
++.+..|||||+++|++..+.. ++.++++.....++. .+....|.+.+ ++.+.++|++..+ ..+++..+ +.
T Consensus 2 ~~~~vgiDIg~~~Ik~v~~~~~-~~~~~v~~~~~~~~p--~~~i~~g~i~d--~~~~~~~l~~~~~---~~~~~~k~v~~ 73 (348)
T TIGR01175 2 KSLLVGIDIGSTSVKVAQLKRS-GDRYKLEHYAVEPLP--AGIFTEGHIVE--YQAVAEALKELLS---ELGINTKKAAT 73 (348)
T ss_pred CCcEEEEEeccCeEEEEEEEec-CCceEEEEEEEEECC--CCcccCCCccC--HHHHHHHHHHHHH---HcCCCcceEEE
Confidence 4567899999999999988753 556777765554432 33444554432 3444455554433 23443222 22
Q ss_pred EEeehHh--hh-----cCChHHHHHHHH---------------------------------------------------H
Q 014133 91 AVATAAV--RA-----AENKDEFVECVR---------------------------------------------------E 112 (430)
Q Consensus 91 ~vATsA~--R~-----A~N~~~fl~~i~---------------------------------------------------~ 112 (430)
++.++.+ |. .-+.+++-+.|+ +
T Consensus 74 alp~~~~~~r~~~~p~~i~~~el~~~i~~e~~~~ip~~~~e~~~D~~~~~~~~~~~~~~~~v~v~a~~~~~v~~~~~~~~ 153 (348)
T TIGR01175 74 AVPGSAVITKVIPVPAGLDERELEFAVYIEASHYIPYPIEEVSLDFEKLGLKANNPESTVQVLLAATRKEVVDSRLHALK 153 (348)
T ss_pred EecCCeeEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCHHHheeeeEEccCCCCCCCceEEEEEEEecHHHHHHHHHHHH
Confidence 2222110 00 012223332222 2
Q ss_pred HhCCceeeeChHHHHHHHHhhhhc-cCC-C-CCC-ceEEEEeCCCceEEEeeeCCeEeeeeeeehhHHHHHHhhc
Q 014133 113 KVGFEVDVLTGEQEAKFVYMGVLQ-FLP-V-FDR-LVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFG 183 (430)
Q Consensus 113 ~tGl~i~vIsg~eEA~l~~~gv~~-~~~-~-~~~-~~lv~DIGGGStEl~~~~~~~~~~~~Sl~lG~vrl~e~f~ 183 (430)
..|+++..|+-+-=|....+.+.. .+. . ... +.+++|||+++|.++++++|++.+..++|+|.-.+++...
T Consensus 154 ~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~~r~i~~G~~~i~~~i~ 228 (348)
T TIGR01175 154 LAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLFTREVPFGTRQLTSELS 228 (348)
T ss_pred HcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEEEEEeechHHHHHHHHH
Confidence 345555555544444433332111 111 1 122 3899999999999999999999999999999999887653
No 14
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=97.96 E-value=0.0005 Score=70.25 Aligned_cols=41 Identities=27% Similarity=0.490 Sum_probs=37.9
Q ss_pred ceEEEEeCCCceEEEeeeCCeEeeeeeeehhHHHHHHhhcC
Q 014133 144 LVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFGT 184 (430)
Q Consensus 144 ~~lv~DIGGGStEl~~~~~~~~~~~~Sl~lG~vrl~e~f~~ 184 (430)
..+++|||||+|.++.+.+|.+.++.++|+|.-.+|+....
T Consensus 204 Gv~lIDiG~GTTdIai~~~G~l~~~~~ipvgG~~vT~DIa~ 244 (418)
T COG0849 204 GVALIDIGGGTTDIAIYKNGALRYTGVIPVGGDHVTKDIAK 244 (418)
T ss_pred CeEEEEeCCCcEEEEEEECCEEEEEeeEeeCccHHHHHHHH
Confidence 58999999999999999999999999999999999987543
No 15
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=97.75 E-value=0.00028 Score=72.32 Aligned_cols=152 Identities=20% Similarity=0.302 Sum_probs=89.3
Q ss_pred EEEEEecccceeeeEEEEeCC---C-----cEEEEEeecceeeccC----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHc
Q 014133 15 FASIDMGTSSFKLLIIRAYPN---G-----KFLTIDTLKQPVILGR----DLSSSCSISTQSQARSVESLLMFRDIIQSH 82 (430)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~---~-----~~~~i~~~k~~vrLg~----~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~ 82 (430)
-.-|||||.+..|++.++.-. + +++++++ +.+-=++ -+.+...|..+++.+.++ .+|++ -
T Consensus 8 SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~dk--ev~yrS~i~fTPl~~~~~ID~~~i~~~V~--~ey~~----A 79 (475)
T PRK10719 8 SVGIDIGTTTTQVIFSRLELENRASVFQVPRIEIIDK--EIIYRSPIYFTPLLKQGEIDEAAIKELIE--EEYQK----A 79 (475)
T ss_pred EEEEeccCceEEEEEEEEEEecccccccCceEEEeee--EEEEecCceecCCCCCccccHHHHHHHHH--HHHHH----c
Confidence 468999999999999876521 1 2344432 2211111 122446788888888877 44543 2
Q ss_pred CCCCccEE---EEeehHhhhcCChHHHHHHHHHH--------hCCceeeeChHHHHHHHHhhhhc-cCC-CCCCceEEEE
Q 014133 83 NISRDHTR---AVATAAVRAAENKDEFVECVREK--------VGFEVDVLTGEQEAKFVYMGVLQ-FLP-VFDRLVLSVD 149 (430)
Q Consensus 83 ~v~~~~i~---~vATsA~R~A~N~~~fl~~i~~~--------tGl~i~vIsg~eEA~l~~~gv~~-~~~-~~~~~~lv~D 149 (430)
|++++.|. .+-|...-...|....+++.-.. .|++++ +.+..+|... .+. -.+...+++|
T Consensus 80 gi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le-------~iva~~ASg~avLseEke~gVa~ID 152 (475)
T PRK10719 80 GIAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLE-------SIIAGKGAGAQTLSEERNTRVLNID 152 (475)
T ss_pred CCCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHH-------HhhhHHHhhHHHhhhhccCceEEEE
Confidence 44332221 12222222334666666653322 355443 3333333221 111 1234589999
Q ss_pred eCCCceEEEeeeCCeEeeeeeeehhHHHHHHh
Q 014133 150 IGGGSTEFVIGKRGKVVFCESVNLGHVSLSEK 181 (430)
Q Consensus 150 IGGGStEl~~~~~~~~~~~~Sl~lG~vrl~e~ 181 (430)
||||+|.+++|++|++.++.++|+|.-.++..
T Consensus 153 IGgGTT~iaVf~~G~l~~T~~l~vGG~~IT~D 184 (475)
T PRK10719 153 IGGGTANYALFDAGKVIDTACLNVGGRLIETD 184 (475)
T ss_pred eCCCceEEEEEECCEEEEEEEEecccceEEEC
Confidence 99999999999999999999999998777653
No 16
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=97.72 E-value=0.00089 Score=66.51 Aligned_cols=118 Identities=19% Similarity=0.237 Sum_probs=69.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHc-CCCCccEEEEeehHhhhcCChHHHHHHHHHHhC-CceeeeChHHHHHHHHhh
Q 014133 56 SSCSISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVG-FEVDVLTGEQEAKFVYMG 133 (430)
Q Consensus 56 ~~g~ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG-l~i~vIsg~eEA~l~~~g 133 (430)
++|.|++ .+.+-.-|+.|-+.+... .+.. .-.+++.-+==....++.+.+.++. .| -+|.+|+.. .-..+|
T Consensus 64 ~~GvI~D--~~~~~~~l~~~l~k~~~~~~~~~-p~vvi~vP~~~T~verrA~~~a~~~-aGa~~V~li~ep---~AaAiG 136 (326)
T PF06723_consen 64 KDGVIAD--YEAAEEMLRYFLKKALGRRSFFR-PRVVICVPSGITEVERRALIDAARQ-AGARKVYLIEEP---IAAAIG 136 (326)
T ss_dssp ETTEESS--HHHHHHHHHHHHHHHHTSS-SS---EEEEEE-SS--HHHHHHHHHHHHH-TT-SEEEEEEHH---HHHHHH
T ss_pred cCCcccC--HHHHHHHHHHHHHHhccCCCCCC-CeEEEEeCCCCCHHHHHHHHHHHHH-cCCCEEEEecch---HHHHhc
Confidence 4566653 344445566766665543 2221 1222333222223355678888764 56 568888755 444445
Q ss_pred hhccCCCCCCceEEEEeCCCceEEEeeeCCeEeeeeeeehhHHHHHHh
Q 014133 134 VLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEK 181 (430)
Q Consensus 134 v~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~Sl~lG~vrl~e~ 181 (430)
+-..... ....+++|||||+||++...-|.++.+.|+++|.-.+.+.
T Consensus 137 aGl~i~~-~~g~miVDIG~GtTdiavislggiv~s~si~~gG~~~Dea 183 (326)
T PF06723_consen 137 AGLDIFE-PRGSMIVDIGGGTTDIAVISLGGIVASRSIRIGGDDIDEA 183 (326)
T ss_dssp TT--TTS-SS-EEEEEE-SS-EEEEEEETTEEEEEEEES-SHHHHHHH
T ss_pred CCCCCCC-CCceEEEEECCCeEEEEEEECCCEEEEEEEEecCcchhHH
Confidence 3322221 2447999999999999999999999999999999877764
No 17
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=97.57 E-value=5.5e-05 Score=62.92 Aligned_cols=53 Identities=25% Similarity=0.394 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhcccCCC-------------Ccchhhhhh
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK-------------GYHKQSCHI 427 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~~I~~~-------------~h~~Hs~yi 427 (430)
.|+..|+.+|..|++.+.. +.++.++.+||+|||||++..+. .|...|+++
T Consensus 3 ~Hs~~V~~~a~~l~~~~~~----------------~~~~~~l~~aaLlHDiGk~~~~~~~~~~~~~~~~~~~H~~~g~~~ 66 (122)
T PF01966_consen 3 EHSLRVAELAERLADRLGL----------------EEDRELLRIAALLHDIGKIPTPDFIEKKPEERGKFYRHEEIGAEI 66 (122)
T ss_dssp HHHHHHHHHHHHHHHHHTH----------------HHHHHHHHHHHHHTTTTHHSTHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCC----------------chhHHHHHHHHHHHhcCCCCCchHHHHhHhhhchhhhhHHHHHHH
Confidence 7999999999999887653 14579999999999999999774 566677766
Q ss_pred hc
Q 014133 428 IM 429 (430)
Q Consensus 428 I~ 429 (430)
+.
T Consensus 67 ~~ 68 (122)
T PF01966_consen 67 LK 68 (122)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 18
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.48 E-value=0.0017 Score=66.64 Aligned_cols=151 Identities=23% Similarity=0.312 Sum_probs=100.6
Q ss_pred EEEEEecccceeeeEEEEeC---CC-----cEEEEEeecceeeccCCC-----CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 014133 15 FASIDMGTSSFKLLIIRAYP---NG-----KFLTIDTLKQPVILGRDL-----SSSCSISTQSQARSVESLLMFRDIIQS 81 (430)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~---~~-----~~~~i~~~k~~vrLg~~~-----~~~g~ls~e~i~r~~~~L~~f~~~~~~ 81 (430)
-.-|||||.+..|++.++.- .+ ++.+++ |+.+ .-..+ .+...|..+++.+.++ ++|++
T Consensus 5 SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~d--keVi-YrS~I~fTPl~~~~~ID~~al~~iv~--~eY~~---- 75 (473)
T PF06277_consen 5 SVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIVD--KEVI-YRSPIYFTPLLSQTEIDAEALKEIVE--EEYRK---- 75 (473)
T ss_pred EEEEeecCCceeEEEEEeEEEeccCCCccceEEEec--cEEE-ecCCccccCCCCCCccCHHHHHHHHH--HHHHH----
Confidence 35799999999999987541 11 233332 2222 11222 2346788888888776 55543
Q ss_pred cCCCCccE----EEEeehHhhhcCChHHHHHHHHHHhCCc-eeeeChHHHHHHHHhhhhcc-CC-CCCCceEEEEeCCCc
Q 014133 82 HNISRDHT----RAVATAAVRAAENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQF-LP-VFDRLVLSVDIGGGS 154 (430)
Q Consensus 82 ~~v~~~~i----~~vATsA~R~A~N~~~fl~~i~~~tGl~-i~vIsg~eEA~l~~~gv~~~-~~-~~~~~~lv~DIGGGS 154 (430)
-|+.++.| ..+.-++.|+ +|++++++.+....|== |--=-..=|+-+..+|.-.. +. ......+=+|||||.
T Consensus 76 Agi~p~~I~TGAVIITGETArK-eNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGT 154 (473)
T PF06277_consen 76 AGITPEDIDTGAVIITGETARK-ENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGT 154 (473)
T ss_pred cCCCHHHCccccEEEecchhhh-hhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCc
Confidence 36665443 1233344444 79999999999998832 33334567888888876432 11 123557889999999
Q ss_pred eEEEeeeCCeEeeeeeeehhH
Q 014133 155 TEFVIGKRGKVVFCESVNLGH 175 (430)
Q Consensus 155 tEl~~~~~~~~~~~~Sl~lG~ 175 (430)
|-+++|++|++..+..|.+|.
T Consensus 155 tN~avf~~G~v~~T~cl~IGG 175 (473)
T PF06277_consen 155 TNIAVFDNGEVIDTACLDIGG 175 (473)
T ss_pred eeEEEEECCEEEEEEEEeecc
Confidence 999999999999999999885
No 19
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=97.35 E-value=0.0048 Score=61.70 Aligned_cols=118 Identities=17% Similarity=0.208 Sum_probs=72.4
Q ss_pred CCCCCCH-HHHHHHHHHHHHHHHHHHHc-CCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCce-eeeChHHHHHHHHh
Q 014133 56 SSCSIST-QSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYM 132 (430)
Q Consensus 56 ~~g~ls~-e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i-~vIsg~eEA~l~~~ 132 (430)
.+|.+.+ +.+++.++ .+.+.++.. ... .-+++-|--.---.+....+...-+..|++. .+++...=|-+.+
T Consensus 66 ~~G~i~d~~~~~~~l~---~~~~~~~~~~~~~--~p~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~- 139 (336)
T PRK13928 66 RDGVIADYDVTEKMLK---YFINKACGKRFFS--KPRIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGA- 139 (336)
T ss_pred CCCeEecHHHHHHHHH---HHHHHHhccCCCC--CCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHc-
Confidence 3466654 44554444 443333322 121 2233433333233456677777778889985 5565555444432
Q ss_pred hhhccCCCCCCceEEEEeCCCceEEEeeeCCeEeeeeeeehhHHHHHHhh
Q 014133 133 GVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF 182 (430)
Q Consensus 133 gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~Sl~lG~vrl~e~f 182 (430)
|. .... ....+++|+|||+|+++.+..+.+..+.++++|.-.+++..
T Consensus 140 g~--~~~~-~~~~lVvDiGggttdvsvv~~g~~~~~~~~~lGG~did~~i 186 (336)
T PRK13928 140 GL--DISQ-PSGNMVVDIGGGTTDIAVLSLGGIVTSSSIKVAGDKFDEAI 186 (336)
T ss_pred CC--cccC-CCeEEEEEeCCCeEEEEEEEeCCEEEeCCcCCHHHHHHHHH
Confidence 32 1221 24489999999999999999998888889999998888754
No 20
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=97.18 E-value=0.0087 Score=59.98 Aligned_cols=40 Identities=38% Similarity=0.553 Sum_probs=34.1
Q ss_pred ceEEEEeCCCceEEEeeeCCeEeeeeeeehhHHHHHHhhc
Q 014133 144 LVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFG 183 (430)
Q Consensus 144 ~~lv~DIGGGStEl~~~~~~~~~~~~Sl~lG~vrl~e~f~ 183 (430)
..+++|||..+|+++++++|++.++.++++|.-.+++...
T Consensus 181 ~~~lvdiG~~~t~~~i~~~g~~~f~R~i~~G~~~l~~~i~ 220 (340)
T PF11104_consen 181 TVALVDIGASSTTVIIFQNGKPIFSRSIPIGGNDLTEAIA 220 (340)
T ss_dssp EEEEEEE-SS-EEEEEEETTEEEEEEEES-SHHHHHHHHH
T ss_pred eEEEEEecCCeEEEEEEECCEEEEEEEEeeCHHHHHHHHH
Confidence 4699999999999999999999999999999999997654
No 21
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=97.11 E-value=0.011 Score=59.18 Aligned_cols=118 Identities=23% Similarity=0.263 Sum_probs=70.1
Q ss_pred CCCCCC-HHHHHHHHHHHHHHHHHHH-HcCCCCcc-EEEEeehHhhhcCChHHHHHHHHHHhCCce-eeeChHHHHHHHH
Q 014133 56 SSCSIS-TQSQARSVESLLMFRDIIQ-SHNISRDH-TRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVY 131 (430)
Q Consensus 56 ~~g~ls-~e~i~r~~~~L~~f~~~~~-~~~v~~~~-i~~vATsA~R~A~N~~~fl~~i~~~tGl~i-~vIsg~eEA~l~~ 131 (430)
+.|.+. .+.++.. |+.+...+. ..+.+..+ -.+++..+.-...+++.+.+ .-+..|++. .+++..-=|-+.+
T Consensus 67 ~~G~I~d~d~~~~~---l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~ 142 (335)
T PRK13929 67 KDGVIADYDMTTDL---LKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGA 142 (335)
T ss_pred CCCccCCHHHHHHH---HHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhc
Confidence 446653 3554444 444444332 34543221 22344434444445566666 445679885 5555554444432
Q ss_pred hhhhccCCC-CCCceEEEEeCCCceEEEeeeCCeEeeeeeeehhHHHHHHhh
Q 014133 132 MGVLQFLPV-FDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF 182 (430)
Q Consensus 132 ~gv~~~~~~-~~~~~lv~DIGGGStEl~~~~~~~~~~~~Sl~lG~vrl~e~f 182 (430)
| ++. .....+++|+|||+|+++.+..+.+..+.++++|.-.+++..
T Consensus 143 -g----~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~~~~~~GG~~id~~l 189 (335)
T PRK13929 143 -D----LPVDEPVANVVVDIGGGTTEVAIISFGGVVSCHSIRIGGDQLDEDI 189 (335)
T ss_pred -C----CCcCCCceEEEEEeCCCeEEEEEEEeCCEEEecCcCCHHHHHHHHH
Confidence 2 221 124589999999999999998788888899999998887653
No 22
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=97.02 E-value=0.01 Score=59.12 Aligned_cols=156 Identities=18% Similarity=0.208 Sum_probs=85.6
Q ss_pred EEEEecccceeeeEEEEeCCCc----EEEEEeec---ceeeccCC----------------CCCCCCCC-HHHHHHHHHH
Q 014133 16 ASIDMGTSSFKLLIIRAYPNGK----FLTIDTLK---QPVILGRD----------------LSSSCSIS-TQSQARSVES 71 (430)
Q Consensus 16 AvIDIGSNsirL~I~e~~~~~~----~~~i~~~k---~~vrLg~~----------------~~~~g~ls-~e~i~r~~~~ 71 (430)
.+||+||++++.... . ++. +.++...+ ..+-.|+. ...+|.+. .+.++..++-
T Consensus 11 vgiDlGt~~t~i~~~--~-~~~~~~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~e~ll~~ 87 (335)
T PRK13930 11 IGIDLGTANTLVYVK--G-KGIVLNEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEATEAMLRY 87 (335)
T ss_pred eEEEcCCCcEEEEEC--C-CCEEEecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHHHHHHHH
Confidence 799999999888664 1 111 11222111 12223321 23456543 4556655554
Q ss_pred HHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCce-eeeChHHHHHHHHhhhhccCCCCCCceEEEEe
Q 014133 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDI 150 (430)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i-~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DI 150 (430)
+. +++.....-. .-.+|.|.-.---+...+.+.++.+..|++. .+++ |.....++...... ....++++|+
T Consensus 88 ~~--~~~~~~~~~~--~~~vvit~P~~~~~~~r~~~~~~~e~~g~~~~~lv~---ep~AAa~a~g~~~~-~~~~~lVvDi 159 (335)
T PRK13930 88 FI--KKARGRRFFR--KPRIVICVPSGITEVERRAVREAAEHAGAREVYLIE---EPMAAAIGAGLPVT-EPVGNMVVDI 159 (335)
T ss_pred HH--HHHhhcccCC--CCcEEEEECCCCCHHHHHHHHHHHHHcCCCeEEecc---cHHHHHHhcCCCcC-CCCceEEEEe
Confidence 43 2222211111 1233444433333334445555667778774 4444 33333223211111 1234799999
Q ss_pred CCCceEEEeeeCCeEeeeeeeehhHHHHHHhh
Q 014133 151 GGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF 182 (430)
Q Consensus 151 GGGStEl~~~~~~~~~~~~Sl~lG~vrl~e~f 182 (430)
|||.|+++.+..+.+..+...++|...+++..
T Consensus 160 G~gttdvs~v~~g~~~~~~~~~lGG~~id~~l 191 (335)
T PRK13930 160 GGGTTEVAVISLGGIVYSESIRVAGDEMDEAI 191 (335)
T ss_pred CCCeEEEEEEEeCCEEeecCcCchhHHHHHHH
Confidence 99999999999999988999999999888765
No 23
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=96.96 E-value=0.0097 Score=56.90 Aligned_cols=130 Identities=16% Similarity=0.221 Sum_probs=82.8
Q ss_pred EEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEee
Q 014133 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (430)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (430)
+..||+||.|+|.++++ ++ +++..... +.+.. .+..+++|++. +++.+.++.++..++.
T Consensus 2 ~lGIDiGtts~K~vl~d---~g--~il~~~~~---------~~~~~----~~~~~~~l~~~---~~~~~~~~~~i~~i~~ 60 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLME---DG--KVIGYKWL---------DTTPV----IEETARAILEA---LKEAGIGLEPIDKIVA 60 (248)
T ss_pred EEEEEcChhheEEEEEc---CC--EEEEEEEe---------cCCCC----HHHHHHHHHHH---HHHcCCChhheeEEEE
Confidence 45799999999999996 34 34444332 11111 23334444443 4555666556776765
Q ss_pred hHhhhc-CChHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeCCeEe---eeee
Q 014133 95 AAVRAA-ENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVV---FCES 170 (430)
Q Consensus 95 sA~R~A-~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~---~~~S 170 (430)
+.-+.. -. | .+ .. ..|.---..|+....|. . -.++||||..+-++.+++|++. ....
T Consensus 61 Tg~~~~~v~---~-------~~---~~---~~ei~~~~~g~~~~~~~--~-~~vidiGgqd~k~i~~~~g~~~~~~~n~~ 121 (248)
T TIGR00241 61 TGYGRHKVG---F-------AD---KI---VTEISCHGKGANYLAPE--A-RGVIDIGGQDSKVIKIDDGKVDDFTMNDK 121 (248)
T ss_pred ECCCccccc---c-------cC---Cc---eEEhhHHHHHHHHHCCC--C-CEEEEecCCeeEEEEECCCcEeeeeecCc
Confidence 554432 11 1 01 12 23555566677766663 2 3699999999999999999877 6777
Q ss_pred eehhHHHHHHhhcC
Q 014133 171 VNLGHVSLSEKFGT 184 (430)
Q Consensus 171 l~lG~vrl~e~f~~ 184 (430)
...|+-++.|....
T Consensus 122 ca~Gtg~f~e~~a~ 135 (248)
T TIGR00241 122 CAAGTGRFLEVTAR 135 (248)
T ss_pred ccccccHHHHHHHH
Confidence 88999999998753
No 24
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.83 E-value=0.11 Score=51.11 Aligned_cols=71 Identities=25% Similarity=0.314 Sum_probs=54.3
Q ss_pred HhCCceeeeChHHHHHHHHhhhhc-cCCC-CC-CceEEEEeCCCceEEEeeeCCeEeeeeeeehhHHHHHHhhc
Q 014133 113 KVGFEVDVLTGEQEAKFVYMGVLQ-FLPV-FD-RLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFG 183 (430)
Q Consensus 113 ~tGl~i~vIsg~eEA~l~~~gv~~-~~~~-~~-~~~lv~DIGGGStEl~~~~~~~~~~~~Sl~lG~vrl~e~f~ 183 (430)
..|+++.|++=+.=|-+-.+.... .+.. ++ -..+++|||.-||++.+..+|++.++...|+|.-.|++.+.
T Consensus 160 ~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly~r~~~~g~~Qlt~~i~ 233 (354)
T COG4972 160 LAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILYTREVPVGTDQLTQEIQ 233 (354)
T ss_pred HcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeeeEeeccCcHHHHHHHHH
Confidence 458888888888877776666321 1211 11 12469999999999999999999999999999999998754
No 25
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=96.73 E-value=0.025 Score=56.46 Aligned_cols=76 Identities=24% Similarity=0.284 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHhCCc-eeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeCCeEeeeeeeehhHHHHHHh
Q 014133 103 KDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEK 181 (430)
Q Consensus 103 ~~~fl~~i~~~tGl~-i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~Sl~lG~vrl~e~ 181 (430)
..+.+...-+..|++ +.+++..--|-|.| |. ... .....+++|+|||+|+++.++.+.+....+.++|.-.+++.
T Consensus 113 ~r~~~~~~~~~ag~~~~~li~ep~aaa~~~-g~--~~~-~~~~~lVvDiG~gttdvs~v~~~~~~~~~~~~lGG~did~~ 188 (333)
T TIGR00904 113 ERRAVKESALSAGAREVYLIEEPMAAAIGA-GL--PVE-EPTGSMVVDIGGGTTEVAVISLGGIVVSRSIRVGGDEFDEA 188 (333)
T ss_pred HHHHHHHHHHHcCCCeEEEecCHHHHHHhc-CC--ccc-CCceEEEEEcCCCeEEEEEEEeCCEEecCCccchHHHHHHH
Confidence 334455566677888 45666555554433 21 111 12458999999999999999777777778889998888876
Q ss_pred h
Q 014133 182 F 182 (430)
Q Consensus 182 f 182 (430)
.
T Consensus 189 l 189 (333)
T TIGR00904 189 I 189 (333)
T ss_pred H
Confidence 4
No 26
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=96.65 E-value=0.0033 Score=56.32 Aligned_cols=67 Identities=22% Similarity=0.389 Sum_probs=45.3
Q ss_pred HHHHHhcCcccc-hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhcccCC-CCcchhhhh
Q 014133 349 RLAMRFNNKKRV-KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK-KGYHKQSCH 426 (430)
Q Consensus 349 ~la~ry~~~~~~-~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~~I~~-~~h~~Hs~y 426 (430)
.+-++|..+... .|+..|+++|..|-..+.. ++ ...+..++.+||+|||||+...+ ..|..-++.
T Consensus 3 ~ll~~~~~~~~~~~Hs~~Va~~A~~ia~~~~~-~~------------~~~d~~~l~~aaLLHDIGK~~~~~~~H~~~G~~ 69 (164)
T TIGR00295 3 RLLDKYKCDESVRRHCLAVARVAMELAENIRK-KG------------HEVDMDLVLKGALLHDIGRARTHGFEHFVKGAE 69 (164)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHhcc-cc------------ccCCHHHHHHHHHHhcCCcccCCCCCHHHHHHH
Confidence 344556555322 7999999999987655431 11 01346789999999999998655 356666666
Q ss_pred hh
Q 014133 427 II 428 (430)
Q Consensus 427 iI 428 (430)
++
T Consensus 70 iL 71 (164)
T TIGR00295 70 IL 71 (164)
T ss_pred HH
Confidence 54
No 27
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=96.64 E-value=0.042 Score=54.74 Aligned_cols=88 Identities=23% Similarity=0.232 Sum_probs=55.8
Q ss_pred EeehHhhhcCChHHHHHHHHHHhCCce-eeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeCCeEeeeee
Q 014133 92 VATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCES 170 (430)
Q Consensus 92 vATsA~R~A~N~~~fl~~i~~~tGl~i-~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~S 170 (430)
|-|.-.---.++...+...-+..|++. .+++...-|-+.+ |. ... .....+++|+|||+|+++.+..+.+....+
T Consensus 100 vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~-g~--~~~-~~~~~lvvDiGggttdvs~v~~~~~~~~~~ 175 (334)
T PRK13927 100 VICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGA-GL--PVT-EPTGSMVVDIGGGTTEVAVISLGGIVYSKS 175 (334)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHc-CC--ccc-CCCeEEEEEeCCCeEEEEEEecCCeEeeCC
Confidence 444333233345556666667778774 3444443333332 22 111 123479999999999999997777777888
Q ss_pred eehhHHHHHHhhc
Q 014133 171 VNLGHVSLSEKFG 183 (430)
Q Consensus 171 l~lG~vrl~e~f~ 183 (430)
.++|.-.+++.+.
T Consensus 176 ~~lGG~~id~~l~ 188 (334)
T PRK13927 176 VRVGGDKFDEAII 188 (334)
T ss_pred cCChHHHHHHHHH
Confidence 8999988887654
No 28
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=96.62 E-value=0.0017 Score=54.55 Aligned_cols=54 Identities=28% Similarity=0.381 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhccc-----------CCCCcchhhhhhhc
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFT-----------SKKGYHKQSCHIIM 429 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~~I-----------~~~~h~~Hs~yiI~ 429 (430)
.|+..|+.+|..+++.... +..++.++.+||+|||+|+.. ....|.++|+.+++
T Consensus 5 ~Hs~~v~~~~~~~~~~~~~---------------~~~~~~~l~~aaLlHDig~~~~~~~~~~~~~~~~~~h~~~g~~~~~ 69 (145)
T cd00077 5 EHSLRVAQLARRLAEELGL---------------SEEDIELLRLAALLHDIGKPGTPDAITEEESELEKDHAIVGAEILR 69 (145)
T ss_pred HHHHHHHHHHHHHHHHhCc---------------CHHHHHHHHHHHHHHhcCCccCccccCHHHHHHHHhhHHHHHHHHH
Confidence 7999999999998776532 124568899999999999987 35677777777653
No 29
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=96.27 E-value=0.0052 Score=50.40 Aligned_cols=52 Identities=29% Similarity=0.376 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhcccCC----------CCcchhhhhhhc
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK----------KGYHKQSCHIIM 429 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~~I~~----------~~h~~Hs~yiI~ 429 (430)
.|+..|+.+|..+.+++.. .++..+.+||+|||+|+.... ..|..+++++++
T Consensus 7 ~H~~~v~~~~~~l~~~~~~-----------------~~~~~~~~a~LlHDig~~~~~~~~~~~~~~~~~h~~~~~~~~~ 68 (124)
T smart00471 7 EHSLRVAQLAAALAEELGL-----------------LDIELLLLAALLHDIGKPGTPDSFLVKTSVLEDHHFIGAEILL 68 (124)
T ss_pred HHHHHHHHHHHHHHHHcCh-----------------HHHHHHHHHHHHHcccCccCCHHHhcCccHHHHhHHHHHHHHH
Confidence 7999999999988777642 134678999999999999985 688888887765
No 30
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=95.89 E-value=0.0088 Score=55.21 Aligned_cols=66 Identities=17% Similarity=0.122 Sum_probs=47.8
Q ss_pred chhHHHHHHHHHHHHHHhhhhccccchhh-hhhcccCcch-HHHHHHHHHHhhhhcccCCCCcchhhhhhh
Q 014133 360 VKAGAQCASIAKDIFEGLRKCDKLYNNQV-KLIASFEDKD-LEYLEAACLLHNIGHFTSKKGYHKQSCHII 428 (430)
Q Consensus 360 ~~h~~~V~~~a~~LFd~l~~~h~l~~~~~-~~~~~l~~~~-r~lL~~Aa~LhdiG~~I~~~~h~~Hs~yiI 428 (430)
..|++-|+.-|+.||+-|... |..+... + ...+.+| ....-.+|+|||||+.|+-.+|+.||.++-
T Consensus 59 ~vHa~Iva~~Al~i~~lL~~~-Gv~ps~v~d--g~gd~eD~~vivlLga~LHDIGnsVHRd~H~~~sa~La 126 (269)
T COG3294 59 PVHARIVANSALAIYKLLLEK-GVKPSGVTD--GVGDEEDSPVIVLLGAYLHDIGNSVHRDDHELYSAVLA 126 (269)
T ss_pred ceeeeeccchHHHHHHHHHhc-CCCcccccc--cCCchhhhhHHHHHHHHHHhccchhccccHHHHhHHHh
Confidence 379999999999999998764 2211100 0 0122233 256778999999999999999999999874
No 31
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=95.87 E-value=0.087 Score=53.30 Aligned_cols=94 Identities=16% Similarity=0.166 Sum_probs=62.4
Q ss_pred cCCCCccEEEEeehHhhh-cCChHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEee
Q 014133 82 HNISRDHTRAVATAAVRA-AENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (430)
Q Consensus 82 ~~v~~~~i~~vATsA~R~-A~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~ 160 (430)
.++++.+..++-|...-. ...++.+.+.+.+..|++-= .=..++.++.+|.- ...++|+|||+|+|.++.+
T Consensus 89 l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v--~~~~~~~~a~~~~g------~~~~lVVDiG~~~t~v~pv 160 (373)
T smart00268 89 LRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPAL--YIAIQAVLSLYASG------RTTGLVIDSGDGVTHVVPV 160 (373)
T ss_pred cCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeE--EEeccHHHHHHhCC------CCEEEEEecCCCcceEEEE
Confidence 455544445555644322 34456677777776666522 22344555554421 3468999999999999999
Q ss_pred eCCeEeee--eeeehhHHHHHHhhc
Q 014133 161 KRGKVVFC--ESVNLGHVSLSEKFG 183 (430)
Q Consensus 161 ~~~~~~~~--~Sl~lG~vrl~e~f~ 183 (430)
.+|.+... ..+|+|.-.+++.+.
T Consensus 161 ~~G~~~~~~~~~~~~GG~~l~~~l~ 185 (373)
T smart00268 161 VDGYVLPHAIKRIDIAGRDLTDYLK 185 (373)
T ss_pred ECCEEchhhheeccCcHHHHHHHHH
Confidence 99998865 778999999988764
No 32
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=95.52 E-value=0.22 Score=50.36 Aligned_cols=87 Identities=18% Similarity=0.138 Sum_probs=56.4
Q ss_pred cEEEEeehHhhh-cCChHHHHHHHHHHhCCc-eeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeCCeE
Q 014133 88 HTRAVATAAVRA-AENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKV 165 (430)
Q Consensus 88 ~i~~vATsA~R~-A~N~~~fl~~i~~~tGl~-i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~ 165 (430)
+..++-|...-. -..++.+.+.+.+..|++ +-+++.. .++.++.- ...++|+|||+++|.++.+.+|.+
T Consensus 95 ~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~---~~a~~~~g------~~~~lVVDiG~~~t~i~pv~~G~~ 165 (371)
T cd00012 95 EHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQA---VLSLYASG------RTTGLVVDSGDGVTHVVPVYDGYV 165 (371)
T ss_pred CCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechH---HHHHHhcC------CCeEEEEECCCCeeEEEEEECCEE
Confidence 334444443322 234556666666666654 3344433 33333321 245899999999999999999988
Q ss_pred eee--eeeehhHHHHHHhhc
Q 014133 166 VFC--ESVNLGHVSLSEKFG 183 (430)
Q Consensus 166 ~~~--~Sl~lG~vrl~e~f~ 183 (430)
... ..+++|.-.+++.+.
T Consensus 166 ~~~~~~~~~~GG~~l~~~l~ 185 (371)
T cd00012 166 LPHAIKRLDLAGRDLTRYLK 185 (371)
T ss_pred chhhheeccccHHHHHHHHH
Confidence 753 789999999888764
No 33
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=95.28 E-value=0.054 Score=51.93 Aligned_cols=88 Identities=26% Similarity=0.354 Sum_probs=55.3
Q ss_pred EEeehHhhhcCC--hHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeCCeEeee
Q 014133 91 AVATAAVRAAEN--KDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (430)
Q Consensus 91 ~vATsA~R~A~N--~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~ 168 (430)
+|+-+|+-++.. -+.+.+.+++++|++++|-.-| |....+|++.. |-.+.+..++|+|||||.=++.+...-+.+
T Consensus 83 AVgiAAMVkt~~l~M~~iA~~l~~~lgv~V~igGvE--AemAi~GALTT-PGt~~PlaIlDmG~GSTDAsii~~~g~v~~ 159 (332)
T PF08841_consen 83 AVGIAAMVKTDKLQMQMIADELEEELGVPVEIGGVE--AEMAILGALTT-PGTDKPLAILDMGGGSTDASIINRDGEVTA 159 (332)
T ss_dssp EEEEEEEEE-SS-TCHHHHHHHHHHHTSEEEEECEH--HHHHHHHHTTS-TT--SSEEEEEE-SSEEEEEEE-TTS-EEE
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHCCceEEcccc--HHHHHhcccCC-CCCCCCeEEEecCCCcccHHHhCCCCcEEE
Confidence 456666666654 3467999999999999997765 55556787654 434577999999999999777665443444
Q ss_pred eeeehhHHHHHHhh
Q 014133 169 ESVNLGHVSLSEKF 182 (430)
Q Consensus 169 ~Sl~lG~vrl~e~f 182 (430)
..+ -|+-.+--+.
T Consensus 160 iHl-AGAG~mVTml 172 (332)
T PF08841_consen 160 IHL-AGAGNMVTML 172 (332)
T ss_dssp EEE-E-SHHHHHHH
T ss_pred EEe-cCCchhhHHH
Confidence 333 2554444443
No 34
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=95.27 E-value=0.024 Score=43.28 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhcccCC-----CCcchhhhhhh
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK-----KGYHKQSCHII 428 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~~I~~-----~~h~~Hs~yiI 428 (430)
.|+..|+.+|..|= +..+ ++ ...+.+||+|||||+...+ ..|...+++++
T Consensus 7 ~H~~~v~~~a~~la----~~~~-----------~~---~~~l~~AalLHDiG~~~~~~~~~~~~H~~~g~~~l 61 (80)
T TIGR00277 7 QHSLEVAKLAEALA----RELG-----------LD---VELARRGALLHDIGKPITREGVIFESHAVVGAEIA 61 (80)
T ss_pred HHHHHHHHHHHHHH----HHcC-----------CC---HHHHHHHHHHHccCCcccchHHHHHchHHHHHHHH
Confidence 78999999998753 2222 22 2458899999999999874 45555565554
No 35
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=95.25 E-value=0.16 Score=49.77 Aligned_cols=153 Identities=20% Similarity=0.258 Sum_probs=90.0
Q ss_pred EEEEecccceeeeEEEEeC----CC----cEEEEEe---ecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Q 014133 16 ASIDMGTSSFKLLIIRAYP----NG----KFLTIDT---LKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNI 84 (430)
Q Consensus 16 AvIDIGSNsirL~I~e~~~----~~----~~~~i~~---~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v 84 (430)
-.||||+.+..+...++.- .+ +++++.+ ++.++ +---+.+.|.|.+.++...+ +++|+. -|+
T Consensus 8 VGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii~kdi~~rS~i-~FTPv~~q~~id~~alk~~v--~eeY~~----AGi 80 (473)
T COG4819 8 VGIDIGTSTTQVIFSKLELVNMASVSQVPRIEIIKKDISWRSPI-FFTPVDKQGGIDEAALKKLV--LEEYQA----AGI 80 (473)
T ss_pred eeeeccCceeeeeeeeeEEeecccccccceEEEEecceeeecce-eeeeecccCCccHHHHHHHH--HHHHHH----cCC
Confidence 4799999998776554431 11 1233322 12222 12234456788888877665 366653 366
Q ss_pred CCccEE---EEeehHhhhcCChHHHHHHHHHHhCCcee-eeChHHHHHHHHhhhh-ccCC-CCCCceEEEEeCCCceEEE
Q 014133 85 SRDHTR---AVATAAVRAAENKDEFVECVREKVGFEVD-VLTGEQEAKFVYMGVL-QFLP-VFDRLVLSVDIGGGSTEFV 158 (430)
Q Consensus 85 ~~~~i~---~vATsA~R~A~N~~~fl~~i~~~tGl~i~-vIsg~eEA~l~~~gv~-~~~~-~~~~~~lv~DIGGGStEl~ 158 (430)
.++.|- ++-|----.-+|+...++.+..-.|=-|- ---..-|.-..-.|.- .++. ......+-+|||||.|-++
T Consensus 81 ~pesi~sGAvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~s 160 (473)
T COG4819 81 APESIDSGAVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYS 160 (473)
T ss_pred ChhccccccEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCcccee
Confidence 654431 12233333446888888888777762222 2223345444444442 2222 1123468899999999999
Q ss_pred eeeCCeEeeeeeeehhH
Q 014133 159 IGKRGKVVFCESVNLGH 175 (430)
Q Consensus 159 ~~~~~~~~~~~Sl~lG~ 175 (430)
+|+.|++.....|.+|.
T Consensus 161 lFD~Gkv~dTaCLdiGG 177 (473)
T COG4819 161 LFDAGKVSDTACLDIGG 177 (473)
T ss_pred eecccccccceeeecCc
Confidence 99999999888888885
No 36
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=95.20 E-value=0.082 Score=51.80 Aligned_cols=72 Identities=28% Similarity=0.380 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCC-CceEEEEeCCCceEEEeeeCCeEeeeeeeehhHHHHHH
Q 014133 104 DEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFD-RLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSE 180 (430)
Q Consensus 104 ~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~-~~~lv~DIGGGStEl~~~~~~~~~~~~Sl~lG~vrl~e 180 (430)
.++.+..+.+-.-++-+|... .-...|+- ++... ...+++|||||+||+.+..-+.+..+.|+.+|.=++.+
T Consensus 118 rAi~ea~~~aGa~~V~lieEp---~aAAIGag--lpi~ep~G~mvvDIGgGTTevaVISlggiv~~~Sirv~GD~~De 190 (342)
T COG1077 118 RAIKEAAESAGAREVYLIEEP---MAAAIGAG--LPIMEPTGSMVVDIGGGTTEVAVISLGGIVSSSSVRVGGDKMDE 190 (342)
T ss_pred HHHHHHHHhccCceEEEeccH---HHHHhcCC--CcccCCCCCEEEEeCCCceeEEEEEecCEEEEeeEEEecchhhH
Confidence 456666666656667777544 33444543 33322 23699999999999999999999999999999755554
No 37
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=94.96 E-value=0.086 Score=48.22 Aligned_cols=145 Identities=24% Similarity=0.324 Sum_probs=84.4
Q ss_pred CCCCCeEEEEEecccceeeeEEEEeCCCcE-EEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHcCCCC
Q 014133 9 QIPQTLFASIDMGTSSFKLLIIRAYPNGKF-LTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDII-QSHNISR 86 (430)
Q Consensus 9 ~~~~~~~AvIDIGSNsirL~I~e~~~~~~~-~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~-~~~~v~~ 86 (430)
+...++.-.+|+|+-++-..|.+ .++.+ -........||=|--.+ .-.+++..++.++.+ +.+|+.
T Consensus 25 ad~sk~~vGVDLGT~~iV~~vlD--~d~~Pvag~~~~advVRDGiVvd---------f~eaveiVrrlkd~lEk~lGi~- 92 (277)
T COG4820 25 ADESKLWVGVDLGTCDIVSMVLD--RDGQPVAGCLDWADVVRDGIVVD---------FFEAVEIVRRLKDTLEKQLGIR- 92 (277)
T ss_pred cccCceEEEeecccceEEEEEEc--CCCCeEEEEehhhhhhccceEEe---------hhhHHHHHHHHHHHHHHhhCeE-
Confidence 33457888999999999888875 44543 34445555666553222 223445555555543 345662
Q ss_pred ccEEEEeehHhhhc---CChHHHHHHHHHHhCCce-eeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeC
Q 014133 87 DHTRAVATAAVRAA---ENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKR 162 (430)
Q Consensus 87 ~~i~~vATsA~R~A---~N~~~fl~~i~~~tGl~i-~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~ 162 (430)
+.--+|+ +--- -|....++-| +-.|+++ .+|+..--|. .-+.+ +++.++|||||.|.++.+++
T Consensus 93 --~tha~ta-iPPGt~~~~~ri~iNVi-ESAGlevl~vlDEPTAaa-------~vL~l--~dg~VVDiGGGTTGIsi~kk 159 (277)
T COG4820 93 --FTHAATA-IPPGTEQGDPRISINVI-ESAGLEVLHVLDEPTAAA-------DVLQL--DDGGVVDIGGGTTGISIVKK 159 (277)
T ss_pred --eeecccc-CCCCccCCCceEEEEee-cccCceeeeecCCchhHH-------HHhcc--CCCcEEEeCCCcceeEEEEc
Confidence 3222332 2111 1223333333 3457775 3666554332 22333 34789999999999999999
Q ss_pred CeEeeeeeeehhHHHH
Q 014133 163 GKVVFCESVNLGHVSL 178 (430)
Q Consensus 163 ~~~~~~~Sl~lG~vrl 178 (430)
|+++++--=|-|.--+
T Consensus 160 GkViy~ADEpTGGtHm 175 (277)
T COG4820 160 GKVIYSADEPTGGTHM 175 (277)
T ss_pred CcEEEeccCCCCceeE
Confidence 9999876666665333
No 38
>COG5371 Golgi nucleoside diphosphatase [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.045 Score=55.68 Aligned_cols=143 Identities=22% Similarity=0.186 Sum_probs=86.0
Q ss_pred CeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHH----HHHHH-HHHcCCCCc
Q 014133 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLL----MFRDI-IQSHNISRD 87 (430)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~----~f~~~-~~~~~v~~~ 87 (430)
+.+..||-||-.-|..|+++. +|..+...-.-..=+|-.++.+...-+. ++.....+|- .|.-. ++ .+.
T Consensus 120 qYv~~idagstgsr~~iyqfi-dge~~~~~~~~~~n~L~~~l~d~d~~t~-G~~~s~~~l~qiA~~~~p~e~~--r~~-- 193 (549)
T COG5371 120 QYVKMIDAGSTGSRSNIYQFI-DGEIEGQYLWLNTNYLEPGLSDFDTDTV-GFADSGGALLQIAFEFVPSEIR--RCM-- 193 (549)
T ss_pred heecccccCCCccceeEEEee-cCccCcchhhhhhhhhcccccccccccH-HHHhhccHHHHhhhccCCHHHh--hcC--
Confidence 567899999999999999987 5655444333222233333322111111 2222222222 22111 12 233
Q ss_pred cEEEEeehHhhh--cCChHHHHHHHHHHh----------CCceeeeChHHHHHHHHhhhhccCC--C---C-CCceEEEE
Q 014133 88 HTRAVATAAVRA--AENKDEFVECVREKV----------GFEVDVLTGEQEAKFVYMGVLQFLP--V---F-DRLVLSVD 149 (430)
Q Consensus 88 ~i~~vATsA~R~--A~N~~~fl~~i~~~t----------Gl~i~vIsg~eEA~l~~~gv~~~~~--~---~-~~~~lv~D 149 (430)
.+.+.||+.+|- -.-...++.-++... |.-|+++.|.+|.-|.+--+...+. . . ...+-++|
T Consensus 194 pi~~~~taGlrl~Gds~s~~vl~s~r~~l~~n~~f~~y~g~~ieil~G~~Eg~~a~~~m~~~ls~~g~~~~~~~T~~v~d 273 (549)
T COG5371 194 PIIVTATAGLRLLGDSRSDHVLVSTRLGLGANYAFRRYLGDLIEILNGVDEGNLADPCMNRGLSNDGTDAGTHGTGAVVD 273 (549)
T ss_pred cceEEEEeeeeecCccchhhHHHHHHHhhccccccceecccceeeccCccccchhhhhhhhhhccccCCCcccCccccee
Confidence 378899999992 123456777777665 4579999999999777655443321 1 1 24578999
Q ss_pred eCCCceEEEeee
Q 014133 150 IGGGSTEFVIGK 161 (430)
Q Consensus 150 IGGGStEl~~~~ 161 (430)
+|||||++.+-.
T Consensus 274 ~gg~stqll~~~ 285 (549)
T COG5371 274 CGGGSTQLLLKP 285 (549)
T ss_pred ccCcceeeeecC
Confidence 999999999754
No 39
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=94.70 E-value=0.054 Score=53.95 Aligned_cols=65 Identities=17% Similarity=0.271 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCccc-chhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhcccCCC-Ccch
Q 014133 345 RSVVRLAMRFNNKKR-VKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK-GYHK 422 (430)
Q Consensus 345 ~s~~~la~ry~~~~~-~~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~~I~~~-~h~~ 422 (430)
..+..+-++|..+.. ..|...|+++|..|=+++ + -++.++.+||+|||||+.-.+. +|..
T Consensus 173 ee~l~Ll~k~~~~e~l~~Hs~rVa~lA~~LA~~~----~--------------~D~~ll~aAALLHDIGK~k~~~~~H~~ 234 (339)
T PRK12703 173 DQCLDLLKKYGASDLLIRHVKTVYKLAMRIADCI----N--------------ADRRLVAAGALLHDIGRTKTNGIDHAV 234 (339)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHc----C--------------CCHHHHHHHHHHHhcccccccCCCHHH
Confidence 345566677755431 279999999999874332 2 1347888999999999987654 4554
Q ss_pred hhhhh
Q 014133 423 QSCHI 427 (430)
Q Consensus 423 Hs~yi 427 (430)
-++.+
T Consensus 235 ~Ga~i 239 (339)
T PRK12703 235 AGAEI 239 (339)
T ss_pred HHHHH
Confidence 44443
No 40
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=94.68 E-value=0.09 Score=49.65 Aligned_cols=58 Identities=16% Similarity=-0.018 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhcc
Q 014133 343 RWRSVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF 414 (430)
Q Consensus 343 ~~~s~~~la~ry~~~~~~~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~~ 414 (430)
..+.+..+++....+.+..|+.+|..+|..|=.+-.+-++ -+.++|.+||+|||||..
T Consensus 40 l~~~a~~~~~~~l~~~~~~Hs~RV~~~a~~ia~~e~~~~~--------------~D~evl~lAALLHDIG~~ 97 (228)
T TIGR03401 40 LVKFAQEYAKARLPPETYNHSLRVYYYGLAIARDQFPEWD--------------LSDETWFLTCLLHDIGTT 97 (228)
T ss_pred HHHHHHHHHHhhCCHhhhHHHHHHHHHHHHHHHHhccccC--------------CCHHHHHHHHHHHhhccc
Confidence 3345566666655444559999999999875322111111 235789999999999984
No 41
>PTZ00004 actin-2; Provisional
Probab=94.62 E-value=0.68 Score=47.08 Aligned_cols=155 Identities=13% Similarity=0.104 Sum_probs=91.1
Q ss_pred EEEEEecccceeeeEEEEeCCC-c-EEEEEeec----------ceeeccCCC------------CCCCCCC-HHHHHHHH
Q 014133 15 FASIDMGTSSFKLLIIRAYPNG-K-FLTIDTLK----------QPVILGRDL------------SSSCSIS-TQSQARSV 69 (430)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~-~-~~~i~~~k----------~~vrLg~~~------------~~~g~ls-~e~i~r~~ 69 (430)
.-|||+||.++|.-.+.-+... . ...+-+.+ ..+-+|+.. .++|.+. .++++...
T Consensus 8 ~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~d~~e~i~ 87 (378)
T PTZ00004 8 AAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNWDDMEKIW 87 (378)
T ss_pred eEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCHHHHHHHH
Confidence 4799999999998876321100 0 11111111 122234321 2334444 46666655
Q ss_pred HHHHHHHHHHHHcCCCCccEEEEeehH-hhhcCChHHHHHHHHHHhCCce-eeeChHHHHHHHHhhhhccCCCCCCceEE
Q 014133 70 ESLLMFRDIIQSHNISRDHTRAVATAA-VRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLS 147 (430)
Q Consensus 70 ~~L~~f~~~~~~~~v~~~~i~~vATsA-~R~A~N~~~fl~~i~~~tGl~i-~vIsg~eEA~l~~~gv~~~~~~~~~~~lv 147 (430)
+-+ |. +..++++...-++-|.. +--..+++.+.+-+.+..+++- -+.+ ++.++.++. ....++|
T Consensus 88 ~~~--~~---~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~---~~~ls~ya~------g~~tglV 153 (378)
T PTZ00004 88 HHT--FY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAI---QAVLSLYAS------GRTTGIV 153 (378)
T ss_pred HHH--HH---hhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeec---cHHHHHHhc------CCceEEE
Confidence 531 22 23455544445566654 3333456677788888777763 2333 344444442 1245899
Q ss_pred EEeCCCceEEEeeeCCeEe--eeeeeehhHHHHHHhhc
Q 014133 148 VDIGGGSTEFVIGKRGKVV--FCESVNLGHVSLSEKFG 183 (430)
Q Consensus 148 ~DIGGGStEl~~~~~~~~~--~~~Sl~lG~vrl~e~f~ 183 (430)
+|+|.++|.++-+.+|.+. ....+++|.-.+++.+.
T Consensus 154 VDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~ 191 (378)
T PTZ00004 154 LDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMM 191 (378)
T ss_pred EECCCCcEEEEEEECCEEeecceeeecccHHHHHHHHH
Confidence 9999999999999999876 45677899988887654
No 42
>PTZ00280 Actin-related protein 3; Provisional
Probab=94.58 E-value=0.51 Score=48.61 Aligned_cols=120 Identities=12% Similarity=0.040 Sum_probs=70.4
Q ss_pred CCCCC-HHHHHHHHHHHHHHHHHHHHcCCCCccEEEEee-hHhhhcCChHHHHHHHHHHhCCceeeeChHHHHHHHHhhh
Q 014133 57 SCSIS-TQSQARSVESLLMFRDIIQSHNISRDHTRAVAT-AAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGV 134 (430)
Q Consensus 57 ~g~ls-~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT-sA~R~A~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv 134 (430)
+|.+. -+.++...+-+ |.+. .++++..-.++-| ..+--..+++.+.+-+.+..+++-=.+ ...+.++.+|.
T Consensus 75 ~G~I~dwd~~e~l~~~~--~~~~---L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~--~~~~~lslya~ 147 (414)
T PTZ00280 75 HGIVEDWDLMEKFWEQC--IFKY---LRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYI--AVQAVLALRAS 147 (414)
T ss_pred CCEeCCHHHHHHHHHHH--HHHh---hccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEE--ecCHHHhHhhh
Confidence 34444 35666555521 2222 2344323222334 444445577788888888777664222 23344444443
Q ss_pred hccCC---C-CCCceEEEEeCCCceEEEeeeCCeEeee--eeeehhHHHHHHhhc
Q 014133 135 LQFLP---V-FDRLVLSVDIGGGSTEFVIGKRGKVVFC--ESVNLGHVSLSEKFG 183 (430)
Q Consensus 135 ~~~~~---~-~~~~~lv~DIGGGStEl~~~~~~~~~~~--~Sl~lG~vrl~e~f~ 183 (430)
..... . ....++|+|+|.|+|.++-+-+|.+... ..+++|.-.+++.+.
T Consensus 148 ~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~ 202 (414)
T PTZ00280 148 WTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQ 202 (414)
T ss_pred cccccccccCCceeEEEEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHH
Confidence 11000 0 2345899999999999999988887644 577999998888764
No 43
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=94.41 E-value=0.16 Score=48.22 Aligned_cols=80 Identities=14% Similarity=0.270 Sum_probs=47.7
Q ss_pred eEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEe
Q 014133 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (430)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (430)
++.+||+||.|+|..+++ .+|+ ++...+.+......-......+++.+-+.+. .-++++++.++++..+|.+++
T Consensus 1 y~lgiDiGTts~K~~l~d--~~g~--iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~--~~~~~~~~~~~~~~~~I~aI~ 74 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFD--EDGK--IVASASRPYPYYTPEPGWAEQDPDEIWEAIC--EALKELLSQAGIDPEQIKAIG 74 (245)
T ss_dssp EEEEEEECSSEEEEEEEE--TTSC--EEEEEEEEETEBCSSTTEEEE-HHHHHHHHH--HHHHHHHHHCTSCGGGEEEEE
T ss_pred CEEEEEEcccceEEEEEe--CCCC--EEEEEEEeeeeccccccccccChHHHHHHHH--HHHHHHHhhcCcccceeEEEE
Confidence 367999999999999998 4565 3344444333322211112334444443332 234456666778778899999
Q ss_pred ehHhhh
Q 014133 94 TAAVRA 99 (430)
Q Consensus 94 TsA~R~ 99 (430)
.++.+.
T Consensus 75 is~~~~ 80 (245)
T PF00370_consen 75 ISGQGH 80 (245)
T ss_dssp EEE-SS
T ss_pred eccccC
Confidence 988765
No 44
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=94.36 E-value=0.042 Score=56.55 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhcc
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF 414 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~~ 414 (430)
+|+-=|..+|..+++.|..... . .+++.++.++++||+|||||..
T Consensus 54 eHSLGV~~la~~~~~~l~~~~~--~-------~~~~~~~~~~~~AALLHDIGHg 98 (421)
T COG1078 54 EHSLGVYHLARRLLEHLEKNSE--E-------EIDEEERLLVRLAALLHDIGHG 98 (421)
T ss_pred chhhHHHHHHHHHHHHHhhccc--c-------ccchHHHHHHHHHHHHHccCCC
Confidence 7888999999999998875543 1 3566788999999999999964
No 45
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=93.94 E-value=0.07 Score=50.19 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=35.6
Q ss_pred chhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhcccCCCCcchh
Q 014133 360 VKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQ 423 (430)
Q Consensus 360 ~~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~~I~~~~h~~H 423 (430)
..|+..|+.+|..| +...+. +-.+...||+|||||+++.+..-..|
T Consensus 38 l~H~~~Va~lA~~I----a~~~g~--------------D~~l~~~aaLLHDIg~~~~~~~~~~h 83 (222)
T COG1418 38 LEHSLRVAYLAYRI----AEEEGV--------------DPDLALRAALLHDIGKAIDHEPGGSH 83 (222)
T ss_pred HHHHHHHHHHHHHH----HHHcCC--------------CHHHHHHHHHHHhhccccccCCccch
Confidence 48999999999986 333331 34899999999999999998853334
No 46
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=93.91 E-value=0.26 Score=44.84 Aligned_cols=77 Identities=16% Similarity=0.227 Sum_probs=45.1
Q ss_pred EEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHc-CCCCcc-EEEE
Q 014133 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSH-NISRDH-TRAV 92 (430)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~-i~~v 92 (430)
+++|||||.++++++.+..+++.++++.....+ ..++ +.|.|.+ ++.+.+++++..+.+++. +++..+ +.++
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~---s~gi-~~G~I~d--~~~~~~~I~~ai~~ae~~~~~~i~~V~v~i 74 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVP---SRGI-RKGVIVD--IEAAARAIREAVEEAERMAGVKIDSVYVGI 74 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEec---CCCc-cCcEEEC--HHHHHHHHHHHHHHHHHHhCCcccEEEEEE
Confidence 478999999999999998766778887655443 3333 4566654 444444444443333222 444222 3344
Q ss_pred eehHh
Q 014133 93 ATAAV 97 (430)
Q Consensus 93 ATsA~ 97 (430)
+...+
T Consensus 75 ~g~~v 79 (187)
T smart00842 75 SGRHL 79 (187)
T ss_pred cCCce
Confidence 44444
No 47
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=93.27 E-value=0.19 Score=50.59 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=34.7
Q ss_pred CCceEEEEeCCCceEEEeeeCCeEeeeee--eehhHHHHHHhh
Q 014133 142 DRLVLSVDIGGGSTEFVIGKRGKVVFCES--VNLGHVSLSEKF 182 (430)
Q Consensus 142 ~~~~lv~DIGGGStEl~~~~~~~~~~~~S--l~lG~vrl~e~f 182 (430)
+...+++|||+|+|+++.++++++....| ++.|...+.+..
T Consensus 184 ~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I 226 (344)
T PRK13917 184 EGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRI 226 (344)
T ss_pred cCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHH
Confidence 34579999999999999999999976665 999998887653
No 48
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=93.20 E-value=0.096 Score=52.63 Aligned_cols=39 Identities=31% Similarity=0.436 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhcc
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF 414 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~~ 414 (430)
.|+..|+.+|..| .+.. +|++.+.+.|.+||+|||||+-
T Consensus 151 ~Hs~~va~~a~~i----a~~l-----------gl~~~~i~~l~~aalLHDIGKi 189 (344)
T COG2206 151 GHSVRVAELAEAI----AKKL-----------GLSEEKIEELALAGLLHDIGKI 189 (344)
T ss_pred HHHHHHHHHHHHH----HHHc-----------CCCHHHHHHHHHHHHHhhcccc
Confidence 8999999999985 4433 3566778999999999999984
No 49
>PTZ00466 actin-like protein; Provisional
Probab=92.98 E-value=1.7 Score=44.30 Aligned_cols=157 Identities=14% Similarity=0.096 Sum_probs=90.6
Q ss_pred CeEEEEEecccceeeeEEEEeCCC-c-EEEEEeecc----------eeeccCC------------CCCCCCCC-HHHHHH
Q 014133 13 TLFASIDMGTSSFKLLIIRAYPNG-K-FLTIDTLKQ----------PVILGRD------------LSSSCSIS-TQSQAR 67 (430)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~-~-~~~i~~~k~----------~vrLg~~------------~~~~g~ls-~e~i~r 67 (430)
...-|||+||.++|.=.+.-+... . ...+-+.+. .+-.|+. -.++|.+. -+.++.
T Consensus 12 ~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd~~e~ 91 (380)
T PTZ00466 12 NQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPINHGIIENWNDMEN 91 (380)
T ss_pred CCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccccCCeECCHHHHHH
Confidence 345799999999997766311100 0 111211111 1123432 12334443 366666
Q ss_pred HHHHHHHHHHHHHHcCCCCccEEEEeeh-HhhhcCChHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCceE
Q 014133 68 SVESLLMFRDIIQSHNISRDHTRAVATA-AVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVL 146 (430)
Q Consensus 68 ~~~~L~~f~~~~~~~~v~~~~i~~vATs-A~R~A~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~~l 146 (430)
..+-+ |. ..++++++.-++-|+ .+--..+++.+.+-+.+..+++-=.+ ...+.++.++. ....++
T Consensus 92 iw~~~--f~----~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~--~~~~~lsl~a~------g~~tgl 157 (380)
T PTZ00466 92 IWIHV--YN----SMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFI--SIQAILSLYSC------GKTNGT 157 (380)
T ss_pred HHHHH--Hh----hcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEE--ecchHHHHHhc------CCceEE
Confidence 66654 42 245654343344444 44444566777777787777653222 23444444442 124689
Q ss_pred EEEeCCCceEEEeeeCCeEee--eeeeehhHHHHHHhhc
Q 014133 147 SVDIGGGSTEFVIGKRGKVVF--CESVNLGHVSLSEKFG 183 (430)
Q Consensus 147 v~DIGGGStEl~~~~~~~~~~--~~Sl~lG~vrl~e~f~ 183 (430)
|+|+|-++|.++-+-+|.++. ...+++|.-.+++.+.
T Consensus 158 VVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~ 196 (380)
T PTZ00466 158 VLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYLG 196 (380)
T ss_pred EEeCCCCceEEEEEECCEEeecceeEecCchhHHHHHHH
Confidence 999999999999998988763 5567999988887653
No 50
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=92.64 E-value=0.1 Score=46.60 Aligned_cols=45 Identities=20% Similarity=0.170 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhccc
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFT 415 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~~I 415 (430)
.|...|+..|..|......+- . .++...+.++.+||+|||||++-
T Consensus 3 ~H~~~v~~~a~~l~~~~~~~~---~-------~~~~~~~~~~~~~~~lHDiGK~~ 47 (177)
T TIGR01596 3 EHLLDVAAVAEKLKNLDIVIA---D-------LIGKLLRELLDLLALLHDIGKIN 47 (177)
T ss_pred HHHHHHHHHHHHHhcccHHHH---H-------HHhhHHHHHHHHHHHHccCccCC
Confidence 588888888887652111110 0 12334578999999999999963
No 51
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=92.15 E-value=0.27 Score=48.79 Aligned_cols=66 Identities=18% Similarity=0.130 Sum_probs=45.2
Q ss_pred ceeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeCCeEee--eeeeehhHHHHHHhh
Q 014133 117 EVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVF--CESVNLGHVSLSEKF 182 (430)
Q Consensus 117 ~i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~--~~Sl~lG~vrl~e~f 182 (430)
++.|+....=|.+.++-=.......+.+.+|+||||++|.++.++++++.. +.|++.|...+.+..
T Consensus 141 ~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I 208 (320)
T TIGR03739 141 KVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLL 208 (320)
T ss_pred EEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHH
Confidence 356666666565555421001111345689999999999999999998764 557899998888764
No 52
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=91.72 E-value=0.94 Score=43.61 Aligned_cols=135 Identities=16% Similarity=0.212 Sum_probs=72.1
Q ss_pred eEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccE-EEE
Q 014133 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHT-RAV 92 (430)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i-~~v 92 (430)
.++-||+||-+++.++.+.+ ++.+..+..... +.. +.-+.++ +-++ |.+++++.+++..++ .++
T Consensus 2 ~~~GIDiGStttK~Vlid~~-~~~~~~~~~~~~--~~~------~~~~~~~---~~~~---l~~~~~~~g~~~~~i~~i~ 66 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVD-GDKEECLAKRND--RIR------QRDPFKL---AEDA---YDDLLEEAGLAAADVAYCA 66 (262)
T ss_pred eEEEEEcCcccEEEEEEecC-CCeeEEEEEEEe--cCC------CCCHHHH---HHHH---HHHHHHHcCCChhheEEEE
Confidence 57899999999999999742 222333322211 110 1111222 2233 334445566632233 456
Q ss_pred eehHhhhcCChHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEee-eCCeEee---e
Q 014133 93 ATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG-KRGKVVF---C 168 (430)
Q Consensus 93 ATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~-~~~~~~~---~ 168 (430)
+|--=|.. .|.+ + .+ + |-.--..|+....| + ...|+||||--+-++.+ ++|++.. .
T Consensus 67 ~TGYGR~~----~~a~------~-~v---t---EIt~ha~GA~~~~p--~-~~tIiDIGGQD~K~I~~~~~G~v~~f~MN 126 (262)
T TIGR02261 67 TTGEGESL----AFHT------G-HF---Y---SMTTHARGAIYLNP--E-ARAVLDIGALHGRAIRMDERGKVEAYKMT 126 (262)
T ss_pred EECCchhh----hhhc------C-Ce---e---EEeHHHHHHHHHCC--C-CCEEEEeCCCceEEEEEcCCCcEeeEEec
Confidence 66655543 2222 1 11 1 33444556665444 2 24899999999999887 4676532 2
Q ss_pred eeeehhHHHHHHhhc
Q 014133 169 ESVNLGHVSLSEKFG 183 (430)
Q Consensus 169 ~Sl~lG~vrl~e~f~ 183 (430)
..-.-|+-|+.|...
T Consensus 127 dkCAAGTG~FLe~~A 141 (262)
T TIGR02261 127 SQCASGSGQFLENIA 141 (262)
T ss_pred CcccccccHHHHHHH
Confidence 233446666666553
No 53
>PRK00106 hypothetical protein; Provisional
Probab=90.71 E-value=0.49 Score=50.10 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCccc-chhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhcccCCCCcchh
Q 014133 346 SVVRLAMRFNNKKR-VKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQ 423 (430)
Q Consensus 346 s~~~la~ry~~~~~-~~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~~I~~~~h~~H 423 (430)
.+-.|-.|+.++.+ ..|+-.|+.+|..| ...+|+ +..++..|++|||||+.+....-..|
T Consensus 337 ~lg~l~~r~sy~qnl~~HSv~VA~lA~~l----A~~lgl--------------d~e~a~~AGLLHDIGK~v~~e~~g~H 397 (535)
T PRK00106 337 IMGRLQFRTSYGQNVLRHSVEVGKLAGIL----AGELGE--------------NVALARRAGFLHDMGKAIDREVEGSH 397 (535)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHHH----HHHhCC--------------CHHHHHHHHHHHhccCccCccccCCh
Confidence 33334444444321 28999999999874 444432 13679999999999999876543334
No 54
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=90.67 E-value=0.26 Score=44.55 Aligned_cols=33 Identities=36% Similarity=0.631 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhcccC
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTS 416 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~~I~ 416 (430)
.|+-+++.+|.+ .| .+ .=+-+||+|||||.+++
T Consensus 28 eH~LQ~A~lA~~--------~G--------------ad-~elvvAALLHDIGhll~ 60 (179)
T TIGR03276 28 EHALQCAQLAEA--------AG--------------AD-DELIVAAFLHDIGHLLA 60 (179)
T ss_pred HHHHHHHHHHHH--------cC--------------CC-HHHHHHHHHHhcchhhh
Confidence 788888777765 22 11 22589999999999987
No 55
>PTZ00452 actin; Provisional
Probab=90.55 E-value=4.9 Score=40.83 Aligned_cols=154 Identities=17% Similarity=0.119 Sum_probs=90.0
Q ss_pred eEEEEEecccceeeeEEEEeCCCcEEE-----EEeecc----------eeeccCCC------------CCCCCCC-HHHH
Q 014133 14 LFASIDMGTSSFKLLIIRAYPNGKFLT-----IDTLKQ----------PVILGRDL------------SSSCSIS-TQSQ 65 (430)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~-----i~~~k~----------~vrLg~~~------------~~~g~ls-~e~i 65 (430)
..-|||+||.++|.-.+.-+ .++. +-+.+. ..-+|+.. .++|.+. -+.+
T Consensus 6 ~~vViD~Gs~~~k~G~age~---~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~ 82 (375)
T PTZ00452 6 PAVVIDNGSGYCKIGIAGDD---APTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDI 82 (375)
T ss_pred CEEEEECCCCeEEEeeCCCC---CcCEEecceeEEECCccccccccccceEEChhhhccccCcEEcccCcCCEEcCHHHH
Confidence 35799999999998877311 1221 111111 11234321 2334443 3555
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccEEEEeeh-HhhhcCChHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCc
Q 014133 66 ARSVESLLMFRDIIQSHNISRDHTRAVATA-AVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRL 144 (430)
Q Consensus 66 ~r~~~~L~~f~~~~~~~~v~~~~i~~vATs-A~R~A~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~ 144 (430)
+...+-+ |. +..++++++.-++-|+ .+.-..|++.+.+-+.+..+++-=.+ ...+.++.++. ....
T Consensus 83 e~iw~~~--f~---~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~--~~~~~lslya~------g~~t 149 (375)
T PTZ00452 83 EIIWHHA--FY---NELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYI--SNEAVLSLYTS------GKTI 149 (375)
T ss_pred HHHHHHH--HH---hhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEE--echHHHHHHHC------CCce
Confidence 5444321 22 2345665444455565 44445577788888888877754322 33344444442 1245
Q ss_pred eEEEEeCCCceEEEeeeCCeEe--eeeeeehhHHHHHHhhc
Q 014133 145 VLSVDIGGGSTEFVIGKRGKVV--FCESVNLGHVSLSEKFG 183 (430)
Q Consensus 145 ~lv~DIGGGStEl~~~~~~~~~--~~~Sl~lG~vrl~e~f~ 183 (430)
++|+|+|-|+|.++-+-+|.+. ....+++|.-.+++.+.
T Consensus 150 glVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~ 190 (375)
T PTZ00452 150 GLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLT 190 (375)
T ss_pred eeeecCCCCcceEEEEECCEEeccceEEeeccchHHHHHHH
Confidence 8999999999999999999775 45677999988887553
No 56
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=90.05 E-value=6.8 Score=38.43 Aligned_cols=145 Identities=15% Similarity=0.087 Sum_probs=89.0
Q ss_pred CeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEE
Q 014133 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (430)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~v 92 (430)
..+..||||.+++++.+++.. |. ++.+.+.++ -... -.++.++.+.+.++++.+... ....+..+
T Consensus 6 ~~~lgidIggt~i~~~l~d~~--g~--~l~~~~~~~--~~~~-----~~~~~~~~i~~~i~~~~~~~~----~~~~~iGI 70 (314)
T COG1940 6 MTVLGIDIGGTKIKVALVDLD--GE--ILLRERIPT--PTPD-----PEEAILEAILALVAELLKQAQ----GRVAIIGI 70 (314)
T ss_pred cEEEEEEecCCEEEEEEECCC--Cc--EEEEEEEec--CCCC-----chhHHHHHHHHHHHHHHHhcC----CcCceEEE
Confidence 578999999999999999753 44 333332221 1111 114667777777777765442 11235566
Q ss_pred eehHhhhcCC--------------hHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEE
Q 014133 93 ATAAVRAAEN--------------KDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFV 158 (430)
Q Consensus 93 ATsA~R~A~N--------------~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~ 158 (430)
+-+.--...+ ...|.+.+++++|++|.|-+.-.=+-+.-.=.-.. ...++.+.+-+|.| +.-.
T Consensus 71 gi~~pg~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~Pv~veNDan~aalaE~~~g~~--~~~~~~~~i~~gtG-IG~g 147 (314)
T COG1940 71 GIPGPGDVDNGTVIVPAPNLGWWNGVDLAEELEARLGLPVFVENDANAAALAEAWFGAG--RGIDDVVYITLGTG-IGGG 147 (314)
T ss_pred EeccceeccCCcEEeecCCCCccccccHHHHHHHHHCCCEEEecHHHHHHHHHHHhCCC--CCCCCEEEEEEccc-eeEE
Confidence 6554332222 25589999999999999988776665543221111 12345788888876 5556
Q ss_pred eeeCCeEeeeeeeehhH
Q 014133 159 IGKRGKVVFCESVNLGH 175 (430)
Q Consensus 159 ~~~~~~~~~~~Sl~lG~ 175 (430)
++-+|++....+..-|.
T Consensus 148 iv~~g~l~~G~~g~age 164 (314)
T COG1940 148 IIVNGKLLRGANGNAGE 164 (314)
T ss_pred EEECCEEeecCCCcccc
Confidence 67788877655443333
No 57
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=90.02 E-value=0.29 Score=51.81 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhcccCCC---Ccchhhhhhh
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK---GYHKQSCHII 428 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~~I~~~---~h~~Hs~yiI 428 (430)
.|+..|+.+|..|= ...++ + ...+..|++|||||+.+.+. +|..-+++++
T Consensus 332 ~Hs~~VA~lA~~LA----~~lgl-----------d---~~~a~~AGLLHDIGK~~~~e~~~~H~~~Ga~ll 384 (514)
T TIGR03319 332 QHSIEVAHLAGIMA----AELGE-----------D---VKLAKRAGLLHDIGKAVDHEVEGSHVEIGAELA 384 (514)
T ss_pred HHHHHHHHHHHHHH----HHhCc-----------C---HHHHHHHHHHHhcCcccchhhcccHHHHHHHHH
Confidence 69999999998853 33332 2 24567899999999987654 3444445443
No 58
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=89.84 E-value=3 Score=45.24 Aligned_cols=116 Identities=18% Similarity=0.220 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHc-CCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCce-eeeChHHHHHHHHhhhhc
Q 014133 59 SISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQ 136 (430)
Q Consensus 59 ~ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i-~vIsg~eEA~l~~~gv~~ 136 (430)
.++++.+ ....|+.+++.+..+ +.+.. .+|-|==.---.+....+...-+..|+++ ++|+...=|-+.| |.-.
T Consensus 103 ~~~p~ei--~a~iL~~lk~~a~~~lg~~v~--~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay-~~~~ 177 (599)
T TIGR01991 103 TVTPVEV--SAEILKKLKQRAEESLGGDLV--GAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAY-GLDK 177 (599)
T ss_pred EEcHHHH--HHHHHHHHHHHHHHHhCCCcc--eEEEEECCCCCHHHHHHHHHHHHHcCCCceEEecCHHHHHHHH-hhcc
Confidence 4555433 345566766666543 43222 22322111111123344555566789997 6888888888776 3322
Q ss_pred cCCCCCCceEEEEeCCCceEEEeee--CCeEe---eeeeeehhHHHHHHhh
Q 014133 137 FLPVFDRLVLSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLSEKF 182 (430)
Q Consensus 137 ~~~~~~~~~lv~DIGGGStEl~~~~--~~~~~---~~~Sl~lG~vrl~e~f 182 (430)
. .+...+|+|+|||++.+++++ ++.+. .....++|.--+.+.+
T Consensus 178 ~---~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l 225 (599)
T TIGR01991 178 A---SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHAL 225 (599)
T ss_pred C---CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHH
Confidence 1 245689999999999999876 44332 1233578877666543
No 59
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=89.78 E-value=6.2 Score=40.00 Aligned_cols=92 Identities=21% Similarity=0.196 Sum_probs=55.7
Q ss_pred cCCCCccEEEEeehHhhh-cCChHHHHHHHHHHhCCc-eeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEe
Q 014133 82 HNISRDHTRAVATAAVRA-AENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVI 159 (430)
Q Consensus 82 ~~v~~~~i~~vATsA~R~-A~N~~~fl~~i~~~tGl~-i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~ 159 (430)
.++++.+..++-|..... ..-++.+++.+.+..|++ +-+++ ++.++.++.- ...++|+|+|.++|.++-
T Consensus 88 l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~---~~~~a~~~~g------~~tglVVD~G~~~t~v~p 158 (393)
T PF00022_consen 88 LKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIP---SPLLALYASG------RTTGLVVDIGYSSTSVVP 158 (393)
T ss_dssp T-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEE---HHHHHHHHTT------BSSEEEEEESSS-EEEEE
T ss_pred cccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeee---cccccccccc------cccccccccceeeeeeee
Confidence 345544555555554332 334566777777777776 33343 3344443421 235899999999999999
Q ss_pred eeCCeEee--eeeeehhHHHHHHhh
Q 014133 160 GKRGKVVF--CESVNLGHVSLSEKF 182 (430)
Q Consensus 160 ~~~~~~~~--~~Sl~lG~vrl~e~f 182 (430)
+-+|.++. ...+|+|.-.+++.+
T Consensus 159 V~dG~~~~~~~~~~~~GG~~lt~~l 183 (393)
T PF00022_consen 159 VVDGYVLPHSIKRSPIGGDDLTEYL 183 (393)
T ss_dssp EETTEE-GGGBEEES-SHHHHHHHH
T ss_pred eeeccccccccccccccHHHHHHHH
Confidence 99998864 467899998887765
No 60
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=89.67 E-value=0.47 Score=42.02 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhcccC
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTS 416 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~~I~ 416 (430)
.|+..|+.+|..|= +.++ +++ ....+|++|||||++..
T Consensus 11 ~Hsl~Va~~a~~lA----~~~~-----------~d~---e~a~~AGLLHDIGk~~~ 48 (158)
T TIGR00488 11 QHCLGVGQTAKQLA----EANK-----------LDS---KKAEIAGAYHDLAKFLP 48 (158)
T ss_pred HHHHHHHHHHHHHH----HHhC-----------cCH---HHHHHHHHHHHHhccCC
Confidence 79999999999863 3332 121 35889999999999653
No 61
>PTZ00281 actin; Provisional
Probab=89.57 E-value=4.7 Score=40.98 Aligned_cols=95 Identities=13% Similarity=0.112 Sum_probs=61.1
Q ss_pred HcCCCCccEEEEeehHh-hhcCChHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEe
Q 014133 81 SHNISRDHTRAVATAAV-RAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVI 159 (430)
Q Consensus 81 ~~~v~~~~i~~vATsA~-R~A~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~ 159 (430)
..++++.+.-++-|+.. --..+++.+.+.+.+..+++-=-+ ...+.++.++. ....++|+|+|-++|.++-
T Consensus 94 ~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~--~~~~~ls~ya~------g~~tglVVDiG~~~t~v~P 165 (376)
T PTZ00281 94 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYV--AIQAVLSLYAS------GRTTGIVMDSGDGVSHTVP 165 (376)
T ss_pred hccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEe--eccHHHHHHhc------CCceEEEEECCCceEEEEE
Confidence 34566545555556543 333556677777777777663222 22333333331 1246899999999999998
Q ss_pred eeCCeEe--eeeeeehhHHHHHHhhc
Q 014133 160 GKRGKVV--FCESVNLGHVSLSEKFG 183 (430)
Q Consensus 160 ~~~~~~~--~~~Sl~lG~vrl~e~f~ 183 (430)
+-+|.+. ....+++|.-.+++.+.
T Consensus 166 V~dG~~~~~~~~~~~~GG~~lt~~L~ 191 (376)
T PTZ00281 166 IYEGYALPHAILRLDLAGRDLTDYMM 191 (376)
T ss_pred EEecccchhheeeccCcHHHHHHHHH
Confidence 8888776 45677999988887664
No 62
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=89.53 E-value=0.36 Score=47.78 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhcccCCCC
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKG 419 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~~I~~~~ 419 (430)
.|.-.|+++|..+.+.-. .-+|.||-++|+|||||+-..++.
T Consensus 162 eHtl~v~~~~~~l~~~y~-----------------~~n~dll~agalLHDiGKi~E~~~ 203 (314)
T PRK13480 162 YHVVSMLRLAKSICDLYP-----------------SLNKDLLYAGIILHDLGKVIELSG 203 (314)
T ss_pred HHHHHHHHHHHHHHHhcc-----------------ccCHHHHHHHHHHHHhhhHHHhcC
Confidence 788999999998754321 124789999999999999877654
No 63
>PRK12704 phosphodiesterase; Provisional
Probab=89.48 E-value=0.39 Score=50.94 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhcccCCC---Ccchhhhhhh
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK---GYHKQSCHII 428 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~~I~~~---~h~~Hs~yiI 428 (430)
.|+..|+.+|..|=. ..++ + ...+..|++|||||+..++. +|...++.++
T Consensus 338 ~Hs~~Va~lA~~lA~----~lgl-----------d---~~~a~~AgLLHDIGK~~~~e~~~~H~~iGa~il 390 (520)
T PRK12704 338 QHSIEVAHLAGLMAA----ELGL-----------D---VKLAKRAGLLHDIGKALDHEVEGSHVEIGAELA 390 (520)
T ss_pred HHHHHHHHHHHHHHH----HhCc-----------C---HHHHHHHHHHHccCcCccccccCCHHHHHHHHH
Confidence 699999999987543 3332 2 24477999999999997664 3444444443
No 64
>CHL00094 dnaK heat shock protein 70
Probab=89.37 E-value=3.9 Score=44.55 Aligned_cols=71 Identities=24% Similarity=0.398 Sum_probs=47.6
Q ss_pred HHHHHHHhCCce-eeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeCCeEe-----eeeeeehhHHHHHH
Q 014133 107 VECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVV-----FCESVNLGHVSLSE 180 (430)
Q Consensus 107 l~~i~~~tGl~i-~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~-----~~~Sl~lG~vrl~e 180 (430)
+...-+..|+++ ++|+...=|-+.| |... ..+...+|+|+|||++.+++++-+... .....++|.--+.+
T Consensus 154 ~~~Aa~~AGl~v~~li~EptAAAlay-~~~~---~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~ 229 (621)
T CHL00094 154 TKDAGKIAGLEVLRIINEPTAASLAY-GLDK---KNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDK 229 (621)
T ss_pred HHHHHHHcCCceEEEeccHHHHHHHh-cccc---CCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHH
Confidence 344445679995 6888888888776 3221 123568999999999999987644221 23456788766655
Q ss_pred h
Q 014133 181 K 181 (430)
Q Consensus 181 ~ 181 (430)
.
T Consensus 230 ~ 230 (621)
T CHL00094 230 K 230 (621)
T ss_pred H
Confidence 3
No 65
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=89.33 E-value=4 Score=36.31 Aligned_cols=141 Identities=17% Similarity=0.102 Sum_probs=86.3
Q ss_pred EEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC--------CCcc
Q 014133 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNI--------SRDH 88 (430)
Q Consensus 17 vIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v--------~~~~ 88 (430)
.||||.+++++.+++.. | +++.+.+.++. . -.++.++.+.+.++++.......++ +.+.
T Consensus 1 gidig~~~i~~~l~d~~--g--~ii~~~~~~~~--~-------~~~~~~~~l~~~i~~~~~~~~~~gIgi~~pG~v~~~~ 67 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLD--G--EIIYSESIPTP--T-------SPEELLDALAELIERLLADYGRSGIGISVPGIVDSEK 67 (179)
T ss_dssp EEEEESSEEEEEEEETT--S--CEEEEEEEEHH--S-------SHHHHHHHHHHHHHHHHHHHTCEEEEEEESSEEETTT
T ss_pred CEEECCCEEEEEEECCC--C--CEEEEEEEECC--C-------CHHHHHHHHHHHHHHHHhhcccccEEEeccccCcCCC
Confidence 48999999999999853 4 35555555554 1 2356677777777776654431111 1000
Q ss_pred EEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeCCeEeee
Q 014133 89 TRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (430)
Q Consensus 89 i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~ 168 (430)
-.+.++..-.-.| -.+.+.++++++++|.+.+.-.=+-+...-...... .++.+.+.+|-| +...++.+|++...
T Consensus 68 -g~i~~~~~~~~~~-~~l~~~l~~~~~~pv~i~Nd~~~~a~ae~~~~~~~~--~~~~~~l~ig~G-iG~~ii~~g~i~~G 142 (179)
T PF00480_consen 68 -GRIISSPNPGWEN-IPLKEELEERFGVPVIIENDANAAALAEYWFGAAKD--CDNFLYLYIGTG-IGAGIIINGKIYRG 142 (179)
T ss_dssp -TEEEECSSGTGTT-CEHHHHHHHHHTSEEEEEEHHHHHHHHHHHHSTTTT--TSSEEEEEESSS-EEEEEEETTEEETT
T ss_pred -CeEEecCCCCccc-CCHHHHhhcccceEEEEecCCCcceeehhhcCccCC--cceEEEEEeecC-CCcceecccccccC
Confidence 0012222222333 568889999999999999987766555432222212 356899999886 78888889998865
Q ss_pred eeeehhH
Q 014133 169 ESVNLGH 175 (430)
Q Consensus 169 ~Sl~lG~ 175 (430)
.+-..|-
T Consensus 143 ~~~~aGe 149 (179)
T PF00480_consen 143 SNGFAGE 149 (179)
T ss_dssp TTS-TTG
T ss_pred CCccccc
Confidence 4444444
No 66
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=89.12 E-value=3.6 Score=44.76 Aligned_cols=115 Identities=21% Similarity=0.240 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHc-CCCCccEEEEee-hHhhhcCChHHHHHHHHHHhCCce-eeeChHHHHHHHHhhhh
Q 014133 59 SISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVAT-AAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVL 135 (430)
Q Consensus 59 ~ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vAT-sA~R~A~N~~~fl~~i~~~tGl~i-~vIsg~eEA~l~~~gv~ 135 (430)
.++++.+ ....|+..++.++.+ |-+.. .+|-| -|.=. .+....+...-+..|+++ ++|+...=|.+.| |.-
T Consensus 123 ~~~p~ei--~a~iL~~lk~~ae~~lg~~v~--~~VITVPa~f~-~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay-~~~ 196 (616)
T PRK05183 123 LKSPVEV--SAEILKALRQRAEETLGGELD--GAVITVPAYFD-DAQRQATKDAARLAGLNVLRLLNEPTAAAIAY-GLD 196 (616)
T ss_pred eEcHHHH--HHHHHHHHHHHHHHHhCCCcc--eEEEEECCCCC-HHHHHHHHHHHHHcCCCeEEEecchHHHHHHh-hcc
Confidence 3444433 344566767666654 33211 22322 22111 123344455556789997 6888888888876 322
Q ss_pred ccCCCCCCceEEEEeCCCceEEEeee--CCeEe---eeeeeehhHHHHHHhh
Q 014133 136 QFLPVFDRLVLSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLSEKF 182 (430)
Q Consensus 136 ~~~~~~~~~~lv~DIGGGStEl~~~~--~~~~~---~~~Sl~lG~vrl~e~f 182 (430)
. . .+...+|+|+|||++.+++++ ++.+. ......+|.--+.+.+
T Consensus 197 ~--~-~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l 245 (616)
T PRK05183 197 S--G-QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLL 245 (616)
T ss_pred c--C-CCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHH
Confidence 1 1 245689999999999999876 44331 2233567876665543
No 67
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=88.66 E-value=1.5 Score=44.69 Aligned_cols=120 Identities=18% Similarity=0.195 Sum_probs=64.4
Q ss_pred CeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEE
Q 014133 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (430)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~v 92 (430)
..+.-||+||.+++.++.+ ++ +++...-.+ ++ -. .+.+.++| .+++++.|++.+++..+
T Consensus 144 g~~lGIDiGSTttK~Vl~d---d~--~Ii~~~~~~---------t~-~~---~~~a~~~l---~~~l~~~Gl~~~di~~i 202 (404)
T TIGR03286 144 GLTLGIDSGSTTTKAVVME---DN--EVIGTGWVP---------TT-KV---IESAEEAV---ERALEEAGVSLEDVEAI 202 (404)
T ss_pred CEEEEEEcChhheeeEEEc---CC--eEEEEEEee---------cc-cH---HHHHHHHH---HHHHHHcCCCccceeEE
Confidence 3689999999999999985 23 455432111 11 11 22233333 34455667654455544
Q ss_pred -eehHhhhcCChHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeCCeEe
Q 014133 93 -ATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVV 166 (430)
Q Consensus 93 -ATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~ 166 (430)
+|--=|.. +.. ..|.+.- .+|-.-...|+....|...+...|+||||--...+..++|++.
T Consensus 203 ~~TGyGR~~------i~~---~~~ad~i----v~EItaha~GA~~L~p~~~~v~TIIDIGGQDsK~I~l~~G~v~ 264 (404)
T TIGR03286 203 GTTGYGRFT------IGE---HFGADLI----QEELTVNSKGAVYLADKQEGPATVIDIGGMDNKAISVWDGIPD 264 (404)
T ss_pred EeeeecHHH------Hhh---hcCCCce----EEEEhhHHHHHHHhcccCCCCcEEEEeCCCceEEEEEcCCcee
Confidence 45433432 211 1222210 2233344556655444212346999999988888887777653
No 68
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=88.63 E-value=7.4 Score=38.13 Aligned_cols=131 Identities=17% Similarity=0.150 Sum_probs=73.1
Q ss_pred eEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEE-EE
Q 014133 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTR-AV 92 (430)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~-~v 92 (430)
.+.-|||||-+++.++.+ + + +++... ...+|.-+.++.. + -+.+++++.|.+.+++. ++
T Consensus 33 ~~~GIDiGStt~K~Vlld-~--~--~i~~~~---------~~~tg~~~~~~a~---~---~l~~~l~~~g~~~~~v~~~~ 92 (293)
T TIGR03192 33 ITCGIDVGSVSSQAVLVC-D--G--ELYGYN---------SMRTGNNSPDSAK---N---ALQGIMDKIGMKLEDINYVV 92 (293)
T ss_pred EEEEEEeCchhEEEEEEe-C--C--EEEEEE---------eecCCCCHHHHHH---H---HHHHHHHHcCCcccceEEEE
Confidence 679999999999999996 2 3 233221 1223322233322 2 23344455566433344 45
Q ss_pred eehHhhhcCChHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEee-eCCeEee---e
Q 014133 93 ATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG-KRGKVVF---C 168 (430)
Q Consensus 93 ATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~-~~~~~~~---~ 168 (430)
+|--=|..- .|.+ ++ -.|----..|+....|. +-..|+||||--+-++.+ ++|++.. .
T Consensus 93 ~TGyGr~~~---~~a~----------~~---v~EItaha~Ga~~~~pp--~v~tIIDIGGQDsK~I~~d~~G~v~dF~MN 154 (293)
T TIGR03192 93 GTGYGRVNV---PFAH----------KA---ITEIACHARGANYMGGN--AVRTILDMGGQDCKAIHCDEKGKVTNFLMN 154 (293)
T ss_pred EECcchhhc---chhh----------cc---eeeHHHHHHHHHHhcCC--CCCEEEEeCCCceEEEEEcCCCcEeeeeec
Confidence 676666432 1111 12 23555556676655431 224899999999999987 5676432 2
Q ss_pred eeeehhHHHHHHhh
Q 014133 169 ESVNLGHVSLSEKF 182 (430)
Q Consensus 169 ~Sl~lG~vrl~e~f 182 (430)
....-|+-|+.|..
T Consensus 155 dkCAAGTGrFLE~~ 168 (293)
T TIGR03192 155 DKCAAGTGRGMEVI 168 (293)
T ss_pred CcccccccHHHHHH
Confidence 23344666666654
No 69
>PRK12705 hypothetical protein; Provisional
Probab=88.55 E-value=0.47 Score=49.92 Aligned_cols=50 Identities=18% Similarity=0.172 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhcccCCCC---cchhhhhhh
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKG---YHKQSCHII 428 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~~I~~~~---h~~Hs~yiI 428 (430)
.|+..|+.+|..|= ...+ ++ ..++..|++|||||+.+.... |..-+++++
T Consensus 326 ~HSl~VA~lA~~LA----~~lG-----------ld---~d~a~~AGLLHDIGK~ie~e~~~~H~~iGaeLl 378 (508)
T PRK12705 326 SHSLEVAHLAGIIA----AEIG-----------LD---PALAKRAGLLHDIGKSIDRESDGNHVEIGAELA 378 (508)
T ss_pred HHHHHHHHHHHHHH----HHcC-----------cC---HHHHHHHHHHHHcCCcchhhhcccHHHHHHHHH
Confidence 59999999999863 3333 22 245668999999999987653 433355554
No 70
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown.
Probab=88.38 E-value=0.58 Score=47.66 Aligned_cols=46 Identities=20% Similarity=0.184 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhc
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGH 413 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~ 413 (430)
.|+--|+.+|.+|...+..... ... ........|+++||++||||.
T Consensus 41 tHslev~~i~r~~~~~l~~~~~--~~~-----~~~~~~~~l~~~a~L~HDiGh 86 (381)
T TIGR01353 41 THSLEVAQVGRSIANLIGLRYD--LEL-----EELGPFERLAETACLAHDIGN 86 (381)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc--ccc-----ccccccHHHHHHHHHHhcCCC
Confidence 8999999999999887754211 100 012235689999999999996
No 71
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=88.35 E-value=4.8 Score=44.11 Aligned_cols=111 Identities=18% Similarity=0.254 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHc-CCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCce-eeeChHHHHHHHHhhhhcc
Q 014133 60 ISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQF 137 (430)
Q Consensus 60 ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i-~vIsg~eEA~l~~~gv~~~ 137 (430)
++++.+... .|+..++.++.| |.+.. .+|-|--.---.+....+...-+..|+++ ++|+...=|-+.| |.-.
T Consensus 135 ~speeisa~--iL~~Lk~~Ae~~lg~~v~--~aVITVPayF~~~qR~at~~Aa~~AGl~v~rlInEPtAAAlay-g~~~- 208 (657)
T PTZ00186 135 YSPSQIGAF--VLEKMKETAENFLGHKVS--NAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAY-GMDK- 208 (657)
T ss_pred EcHHHHHHH--HHHHHHHHHHHHhCCccc--eEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEcChHHHHHHH-hccC-
Confidence 455444432 345555555543 43221 22322211111233344555556779996 6999998888877 3221
Q ss_pred CCCCCCceEEEEeCCCceEEEeee--CCeEee---eeeeehhHHHH
Q 014133 138 LPVFDRLVLSVDIGGGSTEFVIGK--RGKVVF---CESVNLGHVSL 178 (430)
Q Consensus 138 ~~~~~~~~lv~DIGGGStEl~~~~--~~~~~~---~~Sl~lG~vrl 178 (430)
. .+...+|+|+|||++.+++++ ++.+.- ....++|.--+
T Consensus 209 -~-~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~Df 252 (657)
T PTZ00186 209 -T-KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDF 252 (657)
T ss_pred -C-CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhH
Confidence 1 245689999999999999876 664432 12346666544
No 72
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=88.18 E-value=3.3 Score=45.08 Aligned_cols=71 Identities=23% Similarity=0.351 Sum_probs=46.3
Q ss_pred HHHHHHHhCCce-eeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeCC--eEe---eeeeeehhHHHHHH
Q 014133 107 VECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRG--KVV---FCESVNLGHVSLSE 180 (430)
Q Consensus 107 l~~i~~~tGl~i-~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~--~~~---~~~Sl~lG~vrl~e 180 (430)
+...-+..|+++ ++|+...=|.+.| |.... .+...+|+|+|||++.+++++-+ .+. .....++|..-+.+
T Consensus 152 ~~~Aa~~AGl~v~~li~EptAAAl~y-~~~~~---~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~ 227 (627)
T PRK00290 152 TKDAGKIAGLEVLRIINEPTAAALAY-GLDKK---GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQ 227 (627)
T ss_pred HHHHHHHcCCceEEEecchHHHHHHh-hhccC---CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHH
Confidence 444445679995 7888888887776 33221 24669999999999999886533 221 12345677765554
Q ss_pred h
Q 014133 181 K 181 (430)
Q Consensus 181 ~ 181 (430)
.
T Consensus 228 ~ 228 (627)
T PRK00290 228 R 228 (627)
T ss_pred H
Confidence 3
No 73
>PRK10119 putative hydrolase; Provisional
Probab=87.89 E-value=0.76 Score=43.46 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=27.7
Q ss_pred chhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhc
Q 014133 360 VKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGH 413 (430)
Q Consensus 360 ~~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~ 413 (430)
..|..+|.++|++|=+ .-+ .+..++.+||+|||||-
T Consensus 27 ~~Hi~RV~~lA~~Ia~----~e~--------------~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 27 ICHFRRVWATAQKLAA----DDD--------------VDMLVVLTACYFHDIVS 62 (231)
T ss_pred hHHHHHHHHHHHHHHH----hcC--------------CCHHHHHHHHHHhhcch
Confidence 3899999999999722 111 24678999999999974
No 74
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=87.86 E-value=0.51 Score=46.95 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=31.8
Q ss_pred chhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhcc
Q 014133 360 VKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF 414 (430)
Q Consensus 360 ~~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~~ 414 (430)
..|..+|+.++..+=.+ . +|++.+-.++..||.|||||+-
T Consensus 187 g~H~~Rv~~~~~~lAe~----l-----------gLse~~v~~i~~AapLHDIGKv 226 (360)
T COG3437 187 GDHLERVAQYSELLAEL----L-----------GLSEEEVDLIKKAAPLHDIGKV 226 (360)
T ss_pred hhHHHHHHHHHHHHHHH----h-----------CCCHHHHHHHHhccchhhcccc
Confidence 37899988888875333 3 3677888999999999999984
No 75
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=87.60 E-value=1.7 Score=46.20 Aligned_cols=79 Identities=16% Similarity=0.182 Sum_probs=45.7
Q ss_pred CeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCCccE
Q 014133 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHT 89 (430)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i 89 (430)
+.+..||+||.|+|..+++. +|+. +...+.+...-......| ...++. .+.+++++++ ++++.++++++|
T Consensus 3 ~~~lgID~GTts~Ka~l~d~--~G~~--l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~---~~~~~~~~~~~I 75 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDL--NGNQ--IAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQ---ALQKAGIPASDI 75 (520)
T ss_pred cEEEEEecCCCceEEEEECC--CCCE--EEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHH---HHHHcCCCccce
Confidence 47889999999999999974 4543 333322221111111122 333433 4455556655 444456665679
Q ss_pred EEEeehHhh
Q 014133 90 RAVATAAVR 98 (430)
Q Consensus 90 ~~vATsA~R 98 (430)
.+++.++.+
T Consensus 76 ~aI~~s~~~ 84 (520)
T PRK10939 76 AAVSATSMR 84 (520)
T ss_pred EEEEEECCc
Confidence 999887653
No 76
>PRK13410 molecular chaperone DnaK; Provisional
Probab=87.46 E-value=5.4 Score=43.81 Aligned_cols=114 Identities=17% Similarity=0.223 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHc-CCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCc-eeeeChHHHHHHHHhhhhc
Q 014133 59 SISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQ 136 (430)
Q Consensus 59 ~ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~-i~vIsg~eEA~l~~~gv~~ 136 (430)
.++++.+ +...|+..++.+..+ |.+..+ .+++-=|.=...-++. +...-+..|++ +++|+...=|-+.| |...
T Consensus 109 ~~speel--~a~iL~~lk~~ae~~lg~~v~~-~VITVPa~f~~~qR~a-~~~Aa~~AGl~v~~li~EPtAAAlay-g~~~ 183 (668)
T PRK13410 109 EFAPEEL--SAMILRKLADDASRYLGEPVTG-AVITVPAYFNDSQRQA-TRDAGRIAGLEVERILNEPTAAALAY-GLDR 183 (668)
T ss_pred EEcHHHH--HHHHHHHHHHHHHHHhCCCcce-EEEEECCCCCHHHHHH-HHHHHHHcCCCeEEEecchHHHHHHh-cccc
Confidence 3455433 234456666665554 332212 1222222211112233 34444567999 45899998888876 3321
Q ss_pred cCCCCCCceEEEEeCCCceEEEeee--CCeEe---eeeeeehhHHHHHH
Q 014133 137 FLPVFDRLVLSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLSE 180 (430)
Q Consensus 137 ~~~~~~~~~lv~DIGGGStEl~~~~--~~~~~---~~~Sl~lG~vrl~e 180 (430)
. .....+|+|+|||++.+++++ ++.+. .....++|..-+.+
T Consensus 184 --~-~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~ 229 (668)
T PRK13410 184 --S-SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDK 229 (668)
T ss_pred --C-CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHH
Confidence 1 245689999999999999876 33221 12335677665544
No 77
>PRK11678 putative chaperone; Provisional
Probab=87.42 E-value=10 Score=39.64 Aligned_cols=85 Identities=24% Similarity=0.366 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHc-CCCCccEEEEeehHhh------hcCCh--HHHHHHHHHHhCCc-eeeeChHHHHHHHHhhhhccCCC
Q 014133 71 SLLMFRDIIQSH-NISRDHTRAVATAAVR------AAENK--DEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFLPV 140 (430)
Q Consensus 71 ~L~~f~~~~~~~-~v~~~~i~~vATsA~R------~A~N~--~~fl~~i~~~tGl~-i~vIsg~eEA~l~~~gv~~~~~~ 140 (430)
.|+.+++.++.+ |.+.. .+|-|-=.. ...|+ ..++....+..|++ +++++...=|-+.| |. .++
T Consensus 133 iL~~lk~~ae~~~g~~v~--~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y-~~--~~~- 206 (450)
T PRK11678 133 MMLHIKQQAEAQLQAAIT--QAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDF-EA--TLT- 206 (450)
T ss_pred HHHHHHHHHHHHhCCCCC--cEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHh-cc--ccC-
Confidence 455666665543 43322 334443322 12333 34566777788998 57899888888877 32 122
Q ss_pred CCCceEEEEeCCCceEEEeee
Q 014133 141 FDRLVLSVDIGGGSTEFVIGK 161 (430)
Q Consensus 141 ~~~~~lv~DIGGGStEl~~~~ 161 (430)
.++..+|+|+|||++.+++.+
T Consensus 207 ~~~~vlV~D~GGGT~D~Svv~ 227 (450)
T PRK11678 207 EEKRVLVVDIGGGTTDCSMLL 227 (450)
T ss_pred CCCeEEEEEeCCCeEEEEEEE
Confidence 245689999999999999875
No 78
>PRK13318 pantothenate kinase; Reviewed
Probab=86.74 E-value=7.3 Score=37.32 Aligned_cols=129 Identities=12% Similarity=0.208 Sum_probs=65.6
Q ss_pred EEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEee
Q 014133 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (430)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (430)
+-+||||-..+++.+++ ++. ++++.+.++.... +.+. .+..+.++++.++.+..++..++=
T Consensus 2 iL~IDIGnT~iK~al~d---~g~--i~~~~~~~t~~~~--------~~~~------~~~~l~~l~~~~~~~~~~i~~I~i 62 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE---GGK--LVAHWRISTDSRR--------TADE------YGVWLKQLLGLSGLDPEDITGIII 62 (258)
T ss_pred EEEEEECCCcEEEEEEE---CCE--EEEEEEEeCCCCC--------CHHH------HHHHHHHHHHHcCCCcccCceEEE
Confidence 45799999999999997 243 3443332221111 1122 223344555666653234555665
Q ss_pred hHhhhcCChHHHHHHHHHHhCCce-eeeC-------------hHHHHH---HHHhhhhccCCCCCCceEEEEeCCCceEE
Q 014133 95 AAVRAAENKDEFVECVREKVGFEV-DVLT-------------GEQEAK---FVYMGVLQFLPVFDRLVLSVDIGGGSTEF 157 (430)
Q Consensus 95 sA~R~A~N~~~fl~~i~~~tGl~i-~vIs-------------g~eEA~---l~~~gv~~~~~~~~~~~lv~DIGGGStEl 157 (430)
+.+....+ +.+.+.++...+.+. -+.+ .++=.- ....|+.... .++.+++|.|.+-|==
T Consensus 63 ssVvp~~~-~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~y~np~~lG~DR~a~~~aa~~~~---~~~~ivid~GTA~t~d 138 (258)
T PRK13318 63 SSVVPSVM-HSLERMCRKYFNIEPLVVVGPGVKTGINIKVDNPKEVGADRIVNAVAAYELY---GGPLIVVDFGTATTFD 138 (258)
T ss_pred EEecCchH-HHHHHHHHHHhCCCCeEEECCCcCCCCceecCChhhcchHHHHHHHHHHHHc---CCCEEEEEcCCceEEE
Confidence 55664333 444455544444333 2222 111111 2223333222 2468999999998866
Q ss_pred EeeeCCeEe
Q 014133 158 VIGKRGKVV 166 (430)
Q Consensus 158 ~~~~~~~~~ 166 (430)
.+-.+|+..
T Consensus 139 ~v~~~g~~~ 147 (258)
T PRK13318 139 VVSAKGEYL 147 (258)
T ss_pred EEcCCCcEE
Confidence 654555543
No 79
>PRK13321 pantothenate kinase; Reviewed
Probab=86.69 E-value=13 Score=35.49 Aligned_cols=129 Identities=16% Similarity=0.250 Sum_probs=66.5
Q ss_pred EEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEeeh
Q 014133 16 ASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATA 95 (430)
Q Consensus 16 AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATs 95 (430)
-+||||-.++++-+++ . + +++.+.+.++...+ ++ + +.+..+.++++.++.+..++..++-+
T Consensus 3 L~IDIGnT~ik~gl~~-~--~--~i~~~~~~~T~~~~--------~~---~---~~~~~l~~l~~~~~~~~~~i~~i~vs 63 (256)
T PRK13321 3 LLIDVGNTNIKLGVFD-G--D--RLLRSFRLPTDKSR--------TS---D---ELGILLLSLFRHAGLDPEDIRAVVIS 63 (256)
T ss_pred EEEEECCCeEEEEEEE-C--C--EEEEEEEEecCCCC--------CH---H---HHHHHHHHHHHHcCCChhhCCeEEEE
Confidence 4699999999999986 2 2 34444333322111 11 1 22233334445555433345555555
Q ss_pred HhhhcCChHHHHHHHHHHhCCceeeeChH-----HHHH-----------HHHhhhhccCCCCCCceEEEEeCCCceEEEe
Q 014133 96 AVRAAENKDEFVECVREKVGFEVDVLTGE-----QEAK-----------FVYMGVLQFLPVFDRLVLSVDIGGGSTEFVI 159 (430)
Q Consensus 96 A~R~A~N~~~fl~~i~~~tGl~i~vIsg~-----eEA~-----------l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~ 159 (430)
.+..+. ...+.+.+.+..+.++.+++.. +.+| ....|+....+ .++.+|+|.|..-|==.+
T Consensus 64 sVvp~~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~y~~P~~lG~DR~a~~~aa~~~~~--~~~~lvid~GTA~T~d~v 140 (256)
T PRK13321 64 SVVPPL-NYSLESACKRYFGIKPLFVGPGIKTGLKIRYDNPREVGADRIVNAVAARRLYP--DRNLIVVDFGTATTFDCV 140 (256)
T ss_pred eecccH-HHHHHHHHHHHhCCCeEEECCCCCCCcccccCChhhccHHHHHHHHHHHHHcC--CCCEEEEECCCceEEEEE
Confidence 576543 4556665666566666655321 1111 12222222221 237999999999875444
Q ss_pred eeCCeEe
Q 014133 160 GKRGKVV 166 (430)
Q Consensus 160 ~~~~~~~ 166 (430)
-.+|+..
T Consensus 141 ~~~g~~~ 147 (256)
T PRK13321 141 SGKGEYL 147 (256)
T ss_pred cCCCcEE
Confidence 4444443
No 80
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=86.66 E-value=4.6 Score=43.49 Aligned_cols=75 Identities=24% Similarity=0.380 Sum_probs=46.5
Q ss_pred HHHHHHHHHhCCce-eeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeee--CCeEe---eeeeeehhHHHH
Q 014133 105 EFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSL 178 (430)
Q Consensus 105 ~fl~~i~~~tGl~i-~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~--~~~~~---~~~Sl~lG~vrl 178 (430)
..+...-+..|+++ ++|+..+=|-+.| +..... ..+..+|+|+|||++.+++++ ++.+. ...+-.+|...+
T Consensus 152 ~~~~~Aa~~agl~~~~li~Ep~Aaa~~y-~~~~~~--~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~ 228 (602)
T PF00012_consen 152 QALRDAAELAGLNVLRLINEPTAAALAY-GLERSD--KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDF 228 (602)
T ss_dssp HHHHHHHHHTT-EEEEEEEHHHHHHHHT-TTTSSS--SEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHH
T ss_pred hcccccccccccccceeecccccccccc-cccccc--cccceeccccccceEeeeehhccccccccccccccccccccee
Confidence 33444445689987 5887666555544 433222 246699999999999998865 55432 234456777766
Q ss_pred HHhh
Q 014133 179 SEKF 182 (430)
Q Consensus 179 ~e~f 182 (430)
.+.+
T Consensus 229 D~~l 232 (602)
T PF00012_consen 229 DEAL 232 (602)
T ss_dssp HHHH
T ss_pred ccee
Confidence 6544
No 81
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=86.60 E-value=0.85 Score=45.56 Aligned_cols=35 Identities=34% Similarity=0.497 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhc
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGH 413 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~ 413 (430)
.|+--|+.+|.++...|. ++ ..|+++||++||||.
T Consensus 65 ~Hsl~V~~iar~~~~~l~---------------~~---~~l~~aaaL~HDiGh 99 (336)
T PRK01286 65 THTLEVAQIARTIARALR---------------LN---EDLTEAIALGHDLGH 99 (336)
T ss_pred HHHHHHHHHHHHHHHHhC---------------CC---HHHHHHHHHHhcCCC
Confidence 899999999999877652 11 368999999999996
No 82
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=86.44 E-value=1.2 Score=40.44 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhcccCCCC
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKG 419 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~~I~~~~ 419 (430)
+|...|+++|.+ |.+.+++ |+ .-...|++|||++++.....
T Consensus 20 ~H~l~V~~~A~~----LA~~y~~-----------d~---~kA~~AgilHD~aK~~p~~~ 60 (187)
T COG1713 20 EHCLGVAETAIE----LAEAYGL-----------DP---EKAYLAGILHDIAKELPEQK 60 (187)
T ss_pred HHHHHHHHHHHH----HHHHhCC-----------CH---HHHHHHHHHHHHHhhCCHHH
Confidence 899999999998 5667653 22 23899999999999876543
No 83
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=86.42 E-value=5.7 Score=43.61 Aligned_cols=106 Identities=16% Similarity=0.241 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHc-CCCCccEEEEee-hHhhhcCChHHHHHHHHHHhCCc-eeeeChHHHHHHHHhhhhccCCCCCCce
Q 014133 69 VESLLMFRDIIQSH-NISRDHTRAVAT-AAVRAAENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFLPVFDRLV 145 (430)
Q Consensus 69 ~~~L~~f~~~~~~~-~v~~~~i~~vAT-sA~R~A~N~~~fl~~i~~~tGl~-i~vIsg~eEA~l~~~gv~~~~~~~~~~~ 145 (430)
-..|+..++.++.+ |.+.. .+|-| -|.=.. .....+...-+..|++ +++|+...=|-+.| |... . .....
T Consensus 156 a~iL~~lk~~ae~~lg~~v~--~~VITVPa~f~~-~qR~a~~~Aa~~AGl~v~~li~EptAAAlay-~~~~--~-~~~~v 228 (663)
T PTZ00400 156 AFVLEKMKETAESYLGRKVK--QAVITVPAYFND-SQRQATKDAGKIAGLDVLRIINEPTAAALAF-GMDK--N-DGKTI 228 (663)
T ss_pred HHHHHHHHHHHHHHhCCCCc--eEEEEECCCCCH-HHHHHHHHHHHHcCCceEEEeCchHHHHHHh-cccc--C-CCcEE
Confidence 34456666666554 43322 22322 222111 2233334445567999 56888888777766 4321 1 23568
Q ss_pred EEEEeCCCceEEEeee--CCeEe---eeeeeehhHHHHHHh
Q 014133 146 LSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLSEK 181 (430)
Q Consensus 146 lv~DIGGGStEl~~~~--~~~~~---~~~Sl~lG~vrl~e~ 181 (430)
+|+|+|||++.+++++ ++.+. .....++|...+.+.
T Consensus 229 lV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~ 269 (663)
T PTZ00400 229 AVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQR 269 (663)
T ss_pred EEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHH
Confidence 9999999999999875 55442 233456776655544
No 84
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=86.38 E-value=4.9 Score=43.50 Aligned_cols=71 Identities=23% Similarity=0.368 Sum_probs=44.9
Q ss_pred HHHHHHHhCCce-eeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeee--CCeEe---eeeeeehhHHHHHH
Q 014133 107 VECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLSE 180 (430)
Q Consensus 107 l~~i~~~tGl~i-~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~--~~~~~---~~~Sl~lG~vrl~e 180 (430)
+...-+..|+++ ++|+...=|-+.| |.... ..+...+|+|+|||++.+++++ ++.+. ......+|..-+.+
T Consensus 149 ~~~Aa~~AGl~v~~li~EptAAAl~y-~~~~~--~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~ 225 (595)
T TIGR02350 149 TKDAGKIAGLEVLRIINEPTAAALAY-GLDKS--KKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQ 225 (595)
T ss_pred HHHHHHHcCCceEEEecchHHHHHHH-hhccc--CCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHH
Confidence 444455679995 6788888777766 43221 1246689999999999998865 33221 12334566655544
No 85
>KOG2681 consensus Metal-dependent phosphohydrolase [Function unknown]
Probab=85.87 E-value=0.95 Score=46.00 Aligned_cols=46 Identities=26% Similarity=0.344 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhc
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGH 413 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~ 413 (430)
+|+.=|..+|..+-+.|++--+..- ++++.+..-.++||+|||||.
T Consensus 76 eHsLG~~~lA~~~v~~L~~~q~~El-------~It~~d~~~vqvA~LLHDIGH 121 (498)
T KOG2681|consen 76 EHSLGTYTLAGILVNALNKNQCPEL-------CITEVDLQAVQVAALLHDIGH 121 (498)
T ss_pred hhhhhhHHHHHHHHHHHhhcCCCCC-------CCCHHHHHHHHHHHHHhhcCC
Confidence 6788888899888888876532211 578899999999999999995
No 86
>PLN03184 chloroplast Hsp70; Provisional
Probab=85.28 E-value=8 Score=42.58 Aligned_cols=71 Identities=20% Similarity=0.385 Sum_probs=46.0
Q ss_pred HHHHHHHhCCce-eeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeC--CeE--e-eeeeeehhHHHHHH
Q 014133 107 VECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKR--GKV--V-FCESVNLGHVSLSE 180 (430)
Q Consensus 107 l~~i~~~tGl~i-~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~--~~~--~-~~~Sl~lG~vrl~e 180 (430)
+...-+..|+++ ++|+...=|.+.| |... ..+...+|+|+|||++.+++++- +.+ . .....++|.-.+.+
T Consensus 191 ~~~Aa~~AGl~v~~li~EPtAAAlay-g~~~---~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~ 266 (673)
T PLN03184 191 TKDAGRIAGLEVLRIINEPTAASLAY-GFEK---KSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDK 266 (673)
T ss_pred HHHHHHHCCCCeEEEeCcHHHHHHHh-hccc---CCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHH
Confidence 444445679995 5788887777766 3321 12456899999999999988653 322 1 22346777766655
Q ss_pred h
Q 014133 181 K 181 (430)
Q Consensus 181 ~ 181 (430)
.
T Consensus 267 ~ 267 (673)
T PLN03184 267 R 267 (673)
T ss_pred H
Confidence 4
No 87
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=84.98 E-value=21 Score=35.03 Aligned_cols=132 Identities=16% Similarity=0.151 Sum_probs=80.8
Q ss_pred EEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccE--EEEee
Q 014133 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHT--RAVAT 94 (430)
Q Consensus 17 vIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i--~~vAT 94 (430)
.||||.+.+++.+++.. |. ++.+.+.+.. .-.++.++.+.+.+++|.+- ++.+..++ .+||+
T Consensus 2 gidig~t~~~~~l~d~~--g~--i~~~~~~~~~---------~~~~~~~~~l~~~i~~~~~~---~~~~~~~i~gIgva~ 65 (318)
T TIGR00744 2 GVDIGGTTIKLGVVDEE--GN--ILSKWKVPTD---------TTPETIVDAIASAVDSFIQH---IAKVGHEIVAIGIGA 65 (318)
T ss_pred EEEeCCCEEEEEEECCC--CC--EEEEEEeCCC---------CCHHHHHHHHHHHHHHHHHh---cCCCccceEEEEEec
Confidence 58999999999998753 43 3443332211 12356677788888877653 33322233 34555
Q ss_pred hHhhhcC------------ChHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeC
Q 014133 95 AAVRAAE------------NKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKR 162 (430)
Q Consensus 95 sA~R~A~------------N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~ 162 (430)
...=+.. +...+.+.+++++|+++-+.+.-.=+-+.-.-.-. ....++.+++.+|.|. -..++.+
T Consensus 66 pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pv~v~NDa~~~alaE~~~g~--~~~~~~~~~v~igtGi-G~giv~~ 142 (318)
T TIGR00744 66 PGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLPVVVENDANAAALGEYKKGA--GKGARDVICITLGTGL-GGGIIIN 142 (318)
T ss_pred cccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCCEEEechHHHHHHHHHHhcc--cCCCCcEEEEEeCCcc-EEEEEEC
Confidence 5432221 23357888999999999988876665553321101 1123568999999886 6666677
Q ss_pred CeEee
Q 014133 163 GKVVF 167 (430)
Q Consensus 163 ~~~~~ 167 (430)
|++..
T Consensus 143 G~~~~ 147 (318)
T TIGR00744 143 GEIRH 147 (318)
T ss_pred CEEee
Confidence 87765
No 88
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=84.84 E-value=11 Score=41.38 Aligned_cols=107 Identities=16% Similarity=0.217 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHc-CCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCce-eeeChHHHHHHHHhhhhccCCCCCCceEE
Q 014133 70 ESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLS 147 (430)
Q Consensus 70 ~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i-~vIsg~eEA~l~~~gv~~~~~~~~~~~lv 147 (430)
..|+..++.++.+ +-+..++ +++.-|.=. .+....+...-+..|+++ ++|+...=|-+.|. ...... .+...+|
T Consensus 123 ~iL~~lk~~ae~~~g~~v~~~-VItVPa~f~-~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~-~~~~~~-~~~~vlv 198 (653)
T PTZ00009 123 MVLQKMKEIAEAYLGKQVKDA-VVTVPAYFN-DSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG-LDKKGD-GEKNVLI 198 (653)
T ss_pred HHHHHHHHHHHHHhCCCccee-EEEeCCCCC-HHHHHHHHHHHHHcCCceeEEecchHHHHHHHh-hhccCC-CCCEEEE
Confidence 3455566666554 3221221 222222111 122334455556779995 68888888888763 322111 2456899
Q ss_pred EEeCCCceEEEeee--CCeEee---eeeeehhHHHHHH
Q 014133 148 VDIGGGSTEFVIGK--RGKVVF---CESVNLGHVSLSE 180 (430)
Q Consensus 148 ~DIGGGStEl~~~~--~~~~~~---~~Sl~lG~vrl~e 180 (430)
+|+|||++.+++++ ++.+.- .....+|..-+.+
T Consensus 199 ~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~ 236 (653)
T PTZ00009 199 FDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDN 236 (653)
T ss_pred EECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHH
Confidence 99999999998865 444321 1224566655543
No 89
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=84.63 E-value=1 Score=45.25 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhcccC
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTS 416 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~~I~ 416 (430)
.|+..|+.+|..|= ...+ +++ ..+.+|++|||||+...
T Consensus 199 ~HSl~VA~~A~~LA----~~~g-----------~d~---~~a~~AGLLHDIGK~~~ 236 (342)
T PRK07152 199 KHCLRVAQLAAELA----KKNN-----------LDP---KKAYYAGLYHDITKEWD 236 (342)
T ss_pred HHHHHHHHHHHHHH----HHhC-----------cCH---HHHHHHHHHHHhhccCC
Confidence 89999999999863 3333 222 66889999999999653
No 90
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=84.61 E-value=0.5 Score=39.79 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=19.6
Q ss_pred EEEEEecccceeeeEEEEeCCCcEEEE
Q 014133 15 FASIDMGTSSFKLLIIRAYPNGKFLTI 41 (430)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i 41 (430)
+++|||||.++++.|++....+..+++
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl 27 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVL 27 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEE
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEE
Confidence 589999999999999986544434443
No 91
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=84.23 E-value=27 Score=34.08 Aligned_cols=133 Identities=20% Similarity=0.147 Sum_probs=74.9
Q ss_pred EEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEeeh
Q 014133 16 ASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATA 95 (430)
Q Consensus 16 AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATs 95 (430)
-.||+||.++++++.+ +++++.-.... + ..++..++-|+..... ++. ...+.+|-
T Consensus 3 iGiDiGgT~~Kiv~~~--~~~~~~f~~~~------------~-----~~~~~~~~~l~~~~~~---~~~---~~~i~~TG 57 (279)
T TIGR00555 3 IGIDIGGTLIKVVYEE--PKGRRKFKTFE------------T-----TNIDKFIEWLKNQIHR---HSR---ITTLCATG 57 (279)
T ss_pred EEEEeCcceEEEEEEc--CCCcEEEEEee------------c-----ccHHHHHHHHHHHHHh---hcC---ceEEEEEC
Confidence 4799999999999975 34443211111 1 2233444444433322 222 12334442
Q ss_pred HhhhcCChHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCC----CCCceEEEEeCCCceEEEeeeCCeEeeeeee
Q 014133 96 AVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPV----FDRLVLSVDIGGGSTEFVIGKRGKVVFCESV 171 (430)
Q Consensus 96 A~R~A~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~----~~~~~lv~DIGGGStEl~~~~~~~~~~~~Sl 171 (430)
..+-.|-+.++...|+++ .-.+|-.-...|+..-++. +-.+.+++.||.| |-+..+++.+..+.---
T Consensus 58 -----gGa~k~~~~~~~~~~v~~---~k~dE~~a~~~g~~~ll~~~~~~~~~p~llvnIGsG-vSi~~v~~~~~~Rv~Gt 128 (279)
T TIGR00555 58 -----GGAFKFAELIYESAGIQL---HKFDEFDALIQGLNYLLKEEPKDDIYPYLLVNIGTG-TSILYVDGDNYERVGGT 128 (279)
T ss_pred -----CcHHHHHHHhccccCCcc---cchhHHHHHHHHHHHHhhcccCCCCCceEEEEecCC-eEEEEEcCccEEEEcCc
Confidence 233456667766666544 2344555555565543331 2256899999888 88888887666665555
Q ss_pred ehhHHHHHHhh
Q 014133 172 NLGHVSLSEKF 182 (430)
Q Consensus 172 ~lG~vrl~e~f 182 (430)
.+|--.+-...
T Consensus 129 ~iGGGTf~GL~ 139 (279)
T TIGR00555 129 SLGGGTFLGLG 139 (279)
T ss_pred cccHHHHHHHH
Confidence 67766666543
No 92
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=84.04 E-value=4.8 Score=42.12 Aligned_cols=75 Identities=12% Similarity=0.284 Sum_probs=42.8
Q ss_pred eEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCCccEE
Q 014133 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHTR 90 (430)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i~ 90 (430)
.+.+||+||.|+|..+++. +|+.. ...+.+..........| ...++. .+.+++++++.. .+ +++.+|.
T Consensus 2 ~ilgiD~GTss~K~~l~d~--~g~~v--a~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~---~~--~~~~~I~ 72 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINR--QGKIV--ASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQIN---SE--LTEKHIR 72 (465)
T ss_pred eEEEEecCCCcEEEEEEcC--CCCEE--EEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHH---hh--cChhceE
Confidence 4678999999999999983 56543 33333322111111222 335544 455566666654 22 3334688
Q ss_pred EEeehHh
Q 014133 91 AVATAAV 97 (430)
Q Consensus 91 ~vATsA~ 97 (430)
+|+.+..
T Consensus 73 aI~~s~~ 79 (465)
T TIGR02628 73 GIAVTTF 79 (465)
T ss_pred EEEEecc
Confidence 8888765
No 93
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=83.81 E-value=1.3 Score=45.81 Aligned_cols=43 Identities=26% Similarity=0.442 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHhh-hhccccchhhhhhcccC--cchHHHHHHHHHHhhhhc
Q 014133 361 KAGAQCASIAKDIFEGLR-KCDKLYNNQVKLIASFE--DKDLEYLEAACLLHNIGH 413 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~-~~h~l~~~~~~~~~~l~--~~~r~lL~~Aa~LhdiG~ 413 (430)
.|+--|+.+|.+|...+. ..+. ++. .....|+++||++||||.
T Consensus 61 tHslev~~i~r~~~~~~~~~~~~----------~~~~~~~~~~l~~a~~L~HDiGh 106 (432)
T PRK05318 61 THSLEVAQIGTGIVAQLKKEKQP----------ELKPLLPSDSLIESLCLAHDIGH 106 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhcccc----------ccccccccHHHHHHHHHHhcCCC
Confidence 899999999999988873 2211 011 114578999999999996
No 94
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=83.30 E-value=2.1 Score=36.01 Aligned_cols=33 Identities=24% Similarity=0.518 Sum_probs=25.4
Q ss_pred eEEEEeCCCceEEEeeeCCeEeeeeeeehhHHH
Q 014133 145 VLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVS 177 (430)
Q Consensus 145 ~lv~DIGGGStEl~~~~~~~~~~~~Sl~lG~vr 177 (430)
.+++|||++.|-++.++.+...+...+|+|...
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~ 33 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVP 33 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES-----
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEeccc
Confidence 368999999999999999999999999999543
No 95
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=83.11 E-value=3.8 Score=43.14 Aligned_cols=83 Identities=14% Similarity=0.160 Sum_probs=51.4
Q ss_pred CCeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCC--CC-CHHHHHHHHHHHHHHHHHHHHcCCCCcc
Q 014133 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SI-STQSQARSVESLLMFRDIIQSHNISRDH 88 (430)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g--~l-s~e~i~r~~~~L~~f~~~~~~~~v~~~~ 88 (430)
.++++.||+||.|.|..|++.. ++. ++.....+++-... +.| .- +.|-.+..+++|+.-.+.+...+.....
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~-~~e--~l~~~~~~i~~~~~--~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~ 79 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAK-NGE--LLSLAQKEITQEFP--KEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVG 79 (516)
T ss_pred cceEEEEEcCCCceEEEEEecC-CCc--cceeeeeeeeeecC--CCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 4789999999999999999854 343 22222233332211 122 12 4566677788888877776666655455
Q ss_pred EEEEeehHhhh
Q 014133 89 TRAVATAAVRA 99 (430)
Q Consensus 89 i~~vATsA~R~ 99 (430)
+.+++.+-=|+
T Consensus 80 ~~~igv~~qr~ 90 (516)
T KOG2517|consen 80 ATCIGVVNQRE 90 (516)
T ss_pred cEEEEEEecCC
Confidence 66666665555
No 96
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=82.81 E-value=0.64 Score=40.99 Aligned_cols=24 Identities=42% Similarity=0.589 Sum_probs=19.6
Q ss_pred HHHHHHHHhhhhcccCCCCcchhh
Q 014133 401 YLEAACLLHNIGHFTSKKGYHKQS 424 (430)
Q Consensus 401 lL~~Aa~LhdiG~~I~~~~h~~Hs 424 (430)
=|-+||+|||||.++..++|..-+
T Consensus 50 ~lVaaALLHDiGhl~~~~g~~ps~ 73 (186)
T COG4341 50 ALVAAALLHDIGHLYADYGHTPSA 73 (186)
T ss_pred HHHHHHHHHhHHHHhhhcCCCccc
Confidence 378999999999999998865433
No 97
>PRK13411 molecular chaperone DnaK; Provisional
Probab=82.23 E-value=11 Score=41.32 Aligned_cols=114 Identities=17% Similarity=0.248 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHc-CCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCce-eeeChHHHHHHHHhhhhcc
Q 014133 60 ISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQF 137 (430)
Q Consensus 60 ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i-~vIsg~eEA~l~~~gv~~~ 137 (430)
++++.+.. ..|+..++.++.+ |.+..++ +++--|.=. ......+...-+..|+++ ++|+...=|-+.| |....
T Consensus 108 ~~peei~a--~iL~~lk~~ae~~lg~~v~~~-VITVPa~f~-~~qR~a~~~Aa~~AGl~v~~li~EPtAAAl~y-~~~~~ 182 (653)
T PRK13411 108 YTPQEISA--MILQKLKQDAEAYLGEPVTQA-VITVPAYFT-DAQRQATKDAGTIAGLEVLRIINEPTAAALAY-GLDKQ 182 (653)
T ss_pred ECHHHHHH--HHHHHHHHHHHHHhCCCcceE-EEEECCCCC-cHHHHHHHHHHHHcCCCeEEEecchHHHHHHh-ccccc
Confidence 45544432 3466666666554 3322221 122212111 223333444556679995 6888888777766 33221
Q ss_pred CCCCCCceEEEEeCCCceEEEeee--CCeEe--e-eeeeehhHHHHHH
Q 014133 138 LPVFDRLVLSVDIGGGSTEFVIGK--RGKVV--F-CESVNLGHVSLSE 180 (430)
Q Consensus 138 ~~~~~~~~lv~DIGGGStEl~~~~--~~~~~--~-~~Sl~lG~vrl~e 180 (430)
..+...+|+|+|||++.+++.+ ++.+. . ...-.+|..-+.+
T Consensus 183 --~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~ 228 (653)
T PRK13411 183 --DQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDN 228 (653)
T ss_pred --CCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHH
Confidence 1245689999999999998765 33221 1 2233566655444
No 98
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=82.14 E-value=6 Score=42.87 Aligned_cols=87 Identities=22% Similarity=0.339 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHc-CCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCce-eeeChHHHHHHHHhhhhccCCCCCCceE
Q 014133 69 VESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVL 146 (430)
Q Consensus 69 ~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i-~vIsg~eEA~l~~~gv~~~~~~~~~~~l 146 (430)
-..|+.+++.++.+ |-+. ..+|-|=-..--.+....+...-+..|+++ ++|+...=|-+.| |... ..++..+
T Consensus 123 a~iL~~lk~~ae~~lg~~v--~~aVITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay-~~~~---~~~~~vl 196 (595)
T PRK01433 123 AEIFIYLKNQAEEQLKTNI--TKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAY-GLNK---NQKGCYL 196 (595)
T ss_pred HHHHHHHHHHHHHHhCCCc--ceEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHH-hccc---CCCCEEE
Confidence 44567777776654 3221 233443322222334455555566789995 6888888888876 4322 1235689
Q ss_pred EEEeCCCceEEEeee
Q 014133 147 SVDIGGGSTEFVIGK 161 (430)
Q Consensus 147 v~DIGGGStEl~~~~ 161 (430)
|+|+|||++.+++++
T Consensus 197 V~DlGGGT~DvSi~~ 211 (595)
T PRK01433 197 VYDLGGGTFDVSILN 211 (595)
T ss_pred EEECCCCcEEEEEEE
Confidence 999999999999875
No 99
>PRK01096 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=82.04 E-value=1.7 Score=45.13 Aligned_cols=49 Identities=14% Similarity=0.250 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhccc-CcchHHHHHHHHHHhhhhc
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASF-EDKDLEYLEAACLLHNIGH 413 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l-~~~~r~lL~~Aa~LhdiG~ 413 (430)
.|+--|+.+|.+|...+... |.....+. .. ......|+++||++||||.
T Consensus 64 tHsleV~~i~r~i~~~l~~~--l~~~~~~~--~~~~~~~~~lv~aa~L~HDiGh 113 (440)
T PRK01096 64 THSLEVSCVGRSLGMRVGET--LKEEKLPD--WISPADIGAIVQSACLAHDIGN 113 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHH--Hhhhcccc--ccccchHHHHHHHHHHHhcCCC
Confidence 79999999998887666432 11100000 01 1123469999999999996
No 100
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=81.68 E-value=2 Score=40.32 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCc--------chHHHHHHHHHHhhhhcc
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFED--------KDLEYLEAACLLHNIGHF 414 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~--------~~r~lL~~Aa~LhdiG~~ 414 (430)
.|+-.|+.+|.+|.+.. .++. +.++ ..+.++-+||+|||+|+-
T Consensus 70 ~HtLev~~~a~~l~~~y----~~p~-------~~~~e~~~~~~~~w~~~~~~aaLlHDlgK~ 120 (218)
T TIGR03760 70 DHTLEVTAAAVRLSKGY----LLPP-------GAAPEEQAAQSDAWNAAVFYAALLHDLGKL 120 (218)
T ss_pred HHHHHHHHHHHHHHhhc----CCCC-------CCCHHHHHHhhHHHHHHHHHHHHHHhhhhh
Confidence 68888888888875433 2211 1111 224689999999999997
No 101
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=81.48 E-value=4.8 Score=31.97 Aligned_cols=84 Identities=13% Similarity=0.252 Sum_probs=47.0
Q ss_pred EEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEee
Q 014133 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (430)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (430)
+-+||+|...+++.+++ ++|.+ +...+.+.. .+ . .+ .++.+.++++++.+ ...+++.
T Consensus 3 ilgiD~Ggt~i~~a~~d--~~g~~--~~~~~~~~~--~~------~-~~-------~~~~l~~~i~~~~~---~~i~Ig~ 59 (99)
T smart00732 3 VLGLDPGRKGIGVAVVD--ETGKL--ADPLEVIPR--TN------K-EA-------DAARLKKLIKKYQP---DLIVIGL 59 (99)
T ss_pred EEEEccCCCeEEEEEEC--CCCCE--ecCEEEEEe--cC------c-ch-------HHHHHHHHHHHhCC---CEEEEeC
Confidence 56899999999999985 34542 222222221 00 0 11 23333444455555 3566773
Q ss_pred hH-----hhhcCChHHHHHHHHHHhCCceeeeC
Q 014133 95 AA-----VRAAENKDEFVECVREKVGFEVDVLT 122 (430)
Q Consensus 95 sA-----~R~A~N~~~fl~~i~~~tGl~i~vIs 122 (430)
.. +...-+ ..|.+.+++++|+++.+.+
T Consensus 60 pg~v~g~~~~~~~-~~l~~~l~~~~~~pv~~~n 91 (99)
T smart00732 60 PLNMNGTASRETE-EAFAELLKERFNLPVVLVD 91 (99)
T ss_pred CcCCCCCcCHHHH-HHHHHHHHHhhCCcEEEEe
Confidence 22 121123 6777888888888887765
No 102
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=81.27 E-value=4.6 Score=42.54 Aligned_cols=76 Identities=13% Similarity=0.224 Sum_probs=44.6
Q ss_pred eEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCCccEE
Q 014133 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHTR 90 (430)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i~ 90 (430)
.+..||+||.++|..+++ .+|+ ++...+.+.+. .....| ...++. .+.++++++ +++.+.++++++|.
T Consensus 2 ~~lgiDiGtt~iKa~l~d--~~g~--~l~~~~~~~~~--~~~~~g~~e~d~~~~~~~i~~~i~---~~~~~~~~~~~~i~ 72 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFD--KDGN--IVAIHQKEFTQ--IFPKPGWVEHDPMEIWESVLSCIA---EALAKAGIKPDDIA 72 (493)
T ss_pred eEEEEecCCCceEEEEEC--CCCC--EEEEEeeeccc--cCCCCCcEeeCHHHHHHHHHHHHH---HHHHHcCCChhhee
Confidence 567899999999999997 3454 44444443332 112223 223333 333344444 45566677666788
Q ss_pred EEeehHhh
Q 014133 91 AVATAAVR 98 (430)
Q Consensus 91 ~vATsA~R 98 (430)
+++-++.+
T Consensus 73 aIgis~~~ 80 (493)
T TIGR01311 73 AIGITNQR 80 (493)
T ss_pred EEEEecCc
Confidence 88877764
No 103
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=81.09 E-value=15 Score=37.35 Aligned_cols=113 Identities=19% Similarity=0.323 Sum_probs=68.1
Q ss_pred EEEEEeecce---eeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHh
Q 014133 38 FLTIDTLKQP---VILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKV 114 (430)
Q Consensus 38 ~~~i~~~k~~---vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~t 114 (430)
|++++....| |..|.+ ++..++||.|... +|..+++.+++|==.. --.||-|- ..+|-|.-++.|
T Consensus 124 fkvv~k~~kp~i~v~v~~g--~~K~FtPeEiSaM--iL~KMKe~AEayLGkk-v~~AVvTv-------PAYFNDAQrQAT 191 (663)
T KOG0100|consen 124 FKVVNKDGKPYIQVKVGGG--ETKVFTPEEISAM--ILTKMKETAEAYLGKK-VTHAVVTV-------PAYFNDAQRQAT 191 (663)
T ss_pred eEEEcCCCCccEEEEccCC--cccccCHHHHHHH--HHHHHHHHHHHHhCCc-ccceEEec-------chhcchHHHhhh
Confidence 4455443333 344444 4567899988764 5788899999882211 12344442 134555545554
Q ss_pred -------CCc-eeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEe--eeCCeE
Q 014133 115 -------GFE-VDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVI--GKRGKV 165 (430)
Q Consensus 115 -------Gl~-i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~--~~~~~~ 165 (430)
|++ ++||+..--|.+.| |.-. ...+++.+|+|+|||...+++ .++|-+
T Consensus 192 KDAGtIAgLnV~RIiNePTaAAIAY-GLDK--k~gEknilVfDLGGGTFDVSlLtIdnGVF 249 (663)
T KOG0100|consen 192 KDAGTIAGLNVVRIINEPTAAAIAY-GLDK--KDGEKNILVFDLGGGTFDVSLLTIDNGVF 249 (663)
T ss_pred cccceeccceEEEeecCccHHHHHh-cccc--cCCcceEEEEEcCCceEEEEEEEEcCceE
Confidence 777 57787776665544 4321 123577999999999999886 456644
No 104
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=81.01 E-value=6.5 Score=40.84 Aligned_cols=79 Identities=10% Similarity=0.199 Sum_probs=49.0
Q ss_pred CCeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEE
Q 014133 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRA 91 (430)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (430)
++.+.+||-||.|.|..+++- +|++ +-..++. +-+...+.|-.-.+..+=--.++.-.++.+...++++.+|.+
T Consensus 4 ~~yIlAiDqGTTssRaivfd~--~g~i--va~~q~e--~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~iaa 77 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDE--DGNI--VAIAQRE--FTQIYPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGEIAA 77 (499)
T ss_pred ccEEEEEecCCcceeEEEECC--CCCc--hhhhhhh--hhhhCCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccceEE
Confidence 478999999999999999963 4543 2222222 122234446555555444444445555666667888877888
Q ss_pred EeehH
Q 014133 92 VATAA 96 (430)
Q Consensus 92 vATsA 96 (430)
+|=+=
T Consensus 78 IGITN 82 (499)
T COG0554 78 IGITN 82 (499)
T ss_pred EEeec
Confidence 87433
No 105
>PRK00047 glpK glycerol kinase; Provisional
Probab=80.78 E-value=5.2 Score=42.20 Aligned_cols=77 Identities=16% Similarity=0.267 Sum_probs=44.7
Q ss_pred CeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCCccE
Q 014133 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHT 89 (430)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i 89 (430)
+.+..||+||.|+|..+++. +|+. +...+.++.+ .....| ...++. .+.++++++ +++.+.++++.+|
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~--~g~~--~~~~~~~~~~--~~~~~g~~e~d~~~~~~~~~~~~~---~~~~~~~~~~~~I 75 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDH--DGNI--VSVAQKEFTQ--IFPQPGWVEHDPNEIWASQLSVIA---EALAKAGISPDQI 75 (498)
T ss_pred CEEEEEecCCCceEEEEECC--CCCE--EEEEeeeccc--cCCCCCeEeeCHHHHHHHHHHHHH---HHHHHcCCChhHe
Confidence 46788999999999999973 4543 3333333222 111122 234444 334444444 4455567765678
Q ss_pred EEEeehHhh
Q 014133 90 RAVATAAVR 98 (430)
Q Consensus 90 ~~vATsA~R 98 (430)
.+++-++.+
T Consensus 76 ~~Igis~~~ 84 (498)
T PRK00047 76 AAIGITNQR 84 (498)
T ss_pred eEEEEecCc
Confidence 888877764
No 106
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=80.70 E-value=8.6 Score=41.50 Aligned_cols=96 Identities=16% Similarity=0.216 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCc-eeeeChHHHHHHHHhhhhcc
Q 014133 59 SISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQF 137 (430)
Q Consensus 59 ~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~-i~vIsg~eEA~l~~~gv~~~ 137 (430)
.++++.+. ...|+.+++.++.+--.+. -.+|-|=-.--......-....-+..|++ +++|+..-=|-|.| |....
T Consensus 94 ~~~~eeis--a~~L~~lk~~ae~~lg~~v-~~~VItVPayF~d~qR~at~~A~~iaGl~vlrlinEPtAAAlay-g~~~~ 169 (579)
T COG0443 94 KYTPEEIS--AMILTKLKEDAEAYLGEKV-TDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAY-GLDKG 169 (579)
T ss_pred eeCHHHHH--HHHHHHHHHHHHHhhCCCc-ceEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHh-HhccC
Confidence 45555443 4556677777776643322 23455533333333445555556667877 67899988888887 43332
Q ss_pred CCCCCCceEEEEeCCCceEEEeee
Q 014133 138 LPVFDRLVLSVDIGGGSTEFVIGK 161 (430)
Q Consensus 138 ~~~~~~~~lv~DIGGGStEl~~~~ 161 (430)
.+...+|+|+|||.+.+++.+
T Consensus 170 ---~~~~vlV~DlGGGTfDvSll~ 190 (579)
T COG0443 170 ---KEKTVLVYDLGGGTFDVSLLE 190 (579)
T ss_pred ---CCcEEEEEEcCCCCEEEEEEE
Confidence 346799999999999999866
No 107
>PRK04123 ribulokinase; Provisional
Probab=79.95 E-value=8.2 Score=41.24 Aligned_cols=81 Identities=9% Similarity=0.043 Sum_probs=47.5
Q ss_pred CeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccC----CCCCCCC--CCHHH-HHHHHHHHHHHHHHHHHcCCC
Q 014133 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGR----DLSSSCS--ISTQS-QARSVESLLMFRDIIQSHNIS 85 (430)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~----~~~~~g~--ls~e~-i~r~~~~L~~f~~~~~~~~v~ 85 (430)
+.+.+||+||.|+|..+++.. +|+. +.....+..... .....|. ..++. .+.+++++++- ++..+++
T Consensus 3 ~~~lgiD~GTts~Ka~l~d~~-~g~~--~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~---~~~~~~~ 76 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVDCA-TGEE--LATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAV---LKEAGVD 76 (548)
T ss_pred cEEEEEecCCCceEEEEEECC-CCcE--eEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHH---HHHcCCC
Confidence 468899999999999999742 4543 322222222110 1122232 23444 66666666663 3445665
Q ss_pred CccEEEEeehHhhh
Q 014133 86 RDHTRAVATAAVRA 99 (430)
Q Consensus 86 ~~~i~~vATsA~R~ 99 (430)
+.+|.+++-++.+.
T Consensus 77 ~~~I~aIgis~~~~ 90 (548)
T PRK04123 77 PAAVVGIGVDFTGS 90 (548)
T ss_pred hhhEEEEEEecccc
Confidence 55789999888744
No 108
>PRK03381 PII uridylyl-transferase; Provisional
Probab=79.69 E-value=1.5 Score=48.92 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhhhcccCCCCcchhhhhhh
Q 014133 400 EYLEAACLLHNIGHFTSKKGYHKQSCHII 428 (430)
Q Consensus 400 ~lL~~Aa~LhdiG~~I~~~~h~~Hs~yiI 428 (430)
.+|.+||+|||||+-... +|.+-++-+.
T Consensus 443 ~lL~lAaLlHDiGKg~~~-~Hs~~Ga~~a 470 (774)
T PRK03381 443 DLLLLGALLHDIGKGRGG-DHSVVGAELA 470 (774)
T ss_pred HHHHHHHHHHhhcCCCCC-ChHHHHHHHH
Confidence 578999999999996543 5666555443
No 109
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=79.12 E-value=1.8 Score=47.60 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhhhcccCCCCcchhhhhhh
Q 014133 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHII 428 (430)
Q Consensus 399 r~lL~~Aa~LhdiG~~I~~~~h~~Hs~yiI 428 (430)
+.+|.+||+|||||+-.. .+|.+-++.+.
T Consensus 402 ~~lL~LAALlHDIGKg~g-~dHs~~GA~~A 430 (693)
T PRK00227 402 PDLLLLGALYHDIGKGYP-RPHEQVGAEMV 430 (693)
T ss_pred cHHHHHHHHHHhhcCCCC-CChhHHHHHHH
Confidence 367889999999999874 35666665544
No 110
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=78.62 E-value=34 Score=32.71 Aligned_cols=126 Identities=21% Similarity=0.306 Sum_probs=74.4
Q ss_pred EEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHH-HHHHHHHcCCCCcc--EEEEe
Q 014133 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLM-FRDIIQSHNISRDH--TRAVA 93 (430)
Q Consensus 17 vIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~-f~~~~~~~~v~~~~--i~~vA 93 (430)
-||.|+.+++.++++. +|. ++.+... +. ..+....++.+.+.|+. +.+++++.+.+... ..+++
T Consensus 2 GIDgGgTkt~~vl~d~--~g~--il~~~~~----~~-----~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~~g 68 (271)
T PF01869_consen 2 GIDGGGTKTKAVLVDE--NGN--ILGRGKG----GG-----ANYNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAICIG 68 (271)
T ss_dssp EEEECSSEEEEEEEET--TSE--EEEEEEE----S------TTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred EEeeChheeeeEEEeC--CCC--EEEEEEe----CC-----CCCCCCCcchhhhHHHHHHHHHHHHcCCCccccceeeee
Confidence 4899999999999973 454 3322211 11 12222334444444433 34555555665433 45567
Q ss_pred ehHhhhcCChHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeCCeEee
Q 014133 94 TAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVF 167 (430)
Q Consensus 94 TsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~ 167 (430)
.+.+=.+.+...|...+... ++.+.+--. ..+.+.. . ++++++=-|.||.=+.+-+++++..
T Consensus 69 ~aG~~~~~~~~~~~~~~~~~---~v~~~~Da~---~al~~~~---~---~~giv~I~GTGS~~~~~~~~g~~~r 130 (271)
T PF01869_consen 69 AAGYGRAGDEQEFQEEIVRS---EVIVVNDAA---IALYGAT---A---EDGIVVIAGTGSIAYGRDRDGRVIR 130 (271)
T ss_dssp EEEEEETTTTTHHHHHHHHH---EEEEEEHHH---HHHHHHS---T---SSEEEEEESSSEEEEEEETTSEEEE
T ss_pred EeeecCcccccchhhcceEE---EEEEEHHHH---HHhCCCC---C---CcEEEEEcCCCceEEEEEcCCcEEE
Confidence 77777777777777666655 777776643 3333322 1 2367777788998888776787654
No 111
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=78.45 E-value=10 Score=40.19 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=45.3
Q ss_pred CCeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCC--CCC-HHHHHHHHHHHHHHHHHHHHcCCCCcc
Q 014133 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SIS-TQSQARSVESLLMFRDIIQSHNISRDH 88 (430)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls-~e~i~r~~~~L~~f~~~~~~~~v~~~~ 88 (430)
++.+.+||+|+.++|.++++.+ ++ +++...+..-..-. ...| .-. ++-.+.+++++++.. ++..++..+
T Consensus 3 ~~~~lgIDiGTt~~Kavl~d~~-~~--~~~~~~~~~~~~~~--~~~g~~e~d~~~~w~~~~~ai~~l~---~~~~~~~~~ 74 (502)
T COG1070 3 MKYVLGIDIGTTSVKAVLFDED-GG--EVVATARFENPVST--PQPGWAEQDPDELWQAILEALRQLL---EESKIDPDA 74 (502)
T ss_pred ccEEEEEEcCCCcEEEEEEeCC-CC--eEEEEeeccccccC--CCCCCcccCHHHHHHHHHHHHHHHH---HhcccChhh
Confidence 3688999999999999999854 23 34433322211111 1112 122 344455555555544 444466567
Q ss_pred EEEEeehHhh
Q 014133 89 TRAVATAAVR 98 (430)
Q Consensus 89 i~~vATsA~R 98 (430)
|.+|+-++.+
T Consensus 75 I~aI~is~~~ 84 (502)
T COG1070 75 IAAIGISGQG 84 (502)
T ss_pred ceEEEEeccc
Confidence 8888766654
No 112
>PRK04926 dgt deoxyguanosinetriphosphate triphosphohydrolase; Provisional
Probab=78.22 E-value=3.1 Score=43.86 Aligned_cols=47 Identities=19% Similarity=0.318 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHhh----hhccccchhhhhhcccC---cchHHHHHHHHHHhhhhc
Q 014133 361 KAGAQCASIAKDIFEGLR----KCDKLYNNQVKLIASFE---DKDLEYLEAACLLHNIGH 413 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~----~~h~l~~~~~~~~~~l~---~~~r~lL~~Aa~LhdiG~ 413 (430)
.|+--|+.+|..|...+. ....... .+++ .....++++||++||||.
T Consensus 68 tHSleV~~i~r~i~~~i~~~l~~~~~~~~------~~~~~~~~~~~~lveaa~L~HDiGh 121 (503)
T PRK04926 68 THSLEVQQVGRYIAKEILSRLKEQKLLEA------YGLDELTGPFESIVEMACLMHDIGN 121 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccc------ccccccccchHHHHHHHHHHhcCCC
Confidence 787777777776655543 2110000 0122 122479999999999995
No 113
>PRK10331 L-fuculokinase; Provisional
Probab=77.15 E-value=15 Score=38.36 Aligned_cols=77 Identities=13% Similarity=0.206 Sum_probs=42.1
Q ss_pred CeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCCccE
Q 014133 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHT 89 (430)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i 89 (430)
+.+.+||+||.++|..+++. +|++ +...+.+...-......| ...++. .+.+++++++.. ++. .+.+|
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~--~G~~--~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~---~~~--~~~~I 72 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDR--QGKI--VARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQIN---SEL--TECHI 72 (470)
T ss_pred ceEEEEecCCCceEEEEEcC--CCcE--EEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHH---HhC--Cccce
Confidence 46788999999999999973 5654 444444322211111122 234443 444455555543 322 22358
Q ss_pred EEEeehHhh
Q 014133 90 RAVATAAVR 98 (430)
Q Consensus 90 ~~vATsA~R 98 (430)
.+++-++.+
T Consensus 73 ~~I~is~~~ 81 (470)
T PRK10331 73 RGITVTTFG 81 (470)
T ss_pred EEEEEeccc
Confidence 888766653
No 114
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=77.04 E-value=2.8 Score=43.32 Aligned_cols=35 Identities=34% Similarity=0.544 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhc
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGH 413 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~ 413 (430)
.|+--|+.+|..|...+. + ...|+++||++||||.
T Consensus 73 tHslev~~~~r~~~~~~~---------------~---~~~~~~~~~l~hd~Gh 107 (428)
T PRK03007 73 THSLEVAQIGRGIAAGLG---------------C---DPDLVDLAGLAHDIGH 107 (428)
T ss_pred HHHHHHHHHHHHHHHHhC---------------C---CHHHHHHHHHHhcCCC
Confidence 899999999999877652 1 1368999999999996
No 115
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=76.79 E-value=9.2 Score=40.78 Aligned_cols=79 Identities=11% Similarity=0.048 Sum_probs=43.5
Q ss_pred eEEEEEecccceeeeEEEEeCCCcEEEEEeecceeecc---CCCC------CCC--CCCHHHH-HHHHHHHHHHHHHHHH
Q 014133 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILG---RDLS------SSC--SISTQSQ-ARSVESLLMFRDIIQS 81 (430)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg---~~~~------~~g--~ls~e~i-~r~~~~L~~f~~~~~~ 81 (430)
.+..||+||.|+|..|++. .+|+. +-....++.+- .... +.| ...++.+ +.+++++ ++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d~-~~G~~--~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~---~~~~~~ 75 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDV-ATGEE--IATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAI---PTVLAE 75 (536)
T ss_pred eEEEEecCCCceEEEEEEC-CCCcE--eeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHH---HHHHHH
Confidence 4678999999999999973 24543 32223333210 0000 012 2334333 3333344 455566
Q ss_pred cCCCCccEEEEeehHhh
Q 014133 82 HNISRDHTRAVATAAVR 98 (430)
Q Consensus 82 ~~v~~~~i~~vATsA~R 98 (430)
.++++++|.+++.++.+
T Consensus 76 ~~~~~~~I~aI~~s~q~ 92 (536)
T TIGR01234 76 LGVDPADVVGIGVDFTA 92 (536)
T ss_pred cCCCHHHEEEEEEecCc
Confidence 67765579999887763
No 116
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=76.50 E-value=2.1 Score=44.94 Aligned_cols=80 Identities=14% Similarity=0.108 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeC-hHH-HHHHHHhhhh-ccCCCC-CCceE
Q 014133 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLT-GEQ-EAKFVYMGVL-QFLPVF-DRLVL 146 (430)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIs-g~e-EA~l~~~gv~-~~~~~~-~~~~l 146 (430)
.+....+.++..|.+ +.+|| -+||+. ++. +...++++.. +.- |..-.|.+.. ...+.. +-.++
T Consensus 15 ~~~~i~~~l~~~g~~---~y~VG-G~VRD~-----llg----~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 81 (466)
T TIGR02692 15 LLAPLAAAFAAAGHE---LYLVG-GSVRDA-----LLG----RLGHDLDFTTDARPEETLAILRPWADAVWDTGIAFGTV 81 (466)
T ss_pred HHHHHHHHHHhCCCE---EEEeC-cHHHHH-----HcC----CCCCCEEEEeCCCHHHHHHHHHHhhhhccccCcccceE
Confidence 444455566677873 55555 567774 222 2233444433 333 3222222211 112221 23367
Q ss_pred EEEeCCCceEEEeeeCC
Q 014133 147 SVDIGGGSTEFVIGKRG 163 (430)
Q Consensus 147 v~DIGGGStEl~~~~~~ 163 (430)
.+.++|...|++.++..
T Consensus 82 ~v~~~~~~~ei~~~r~e 98 (466)
T TIGR02692 82 GAEKDGQQIEITTFRSD 98 (466)
T ss_pred EEEECCcEEEEEecccc
Confidence 77889999999988754
No 117
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=75.87 E-value=10 Score=40.10 Aligned_cols=78 Identities=14% Similarity=0.163 Sum_probs=44.7
Q ss_pred CeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCCc--
Q 014133 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRD-- 87 (430)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e~-i~r~~~~L~~f~~~~~~~~v~~~-- 87 (430)
+.+..||+||.|+|..+++. +|+ ++...+.+..+- ....| ...++. .+.+++++++.. +..+.++.
T Consensus 2 ~~~lgiDiGTts~Ka~l~d~--~G~--~v~~~~~~~~~~--~~~~g~~eqd~~~~~~~~~~~l~~~~---~~~~~~~~~~ 72 (504)
T PTZ00294 2 KYIGSIDQGTTSTRFIIFDE--KGN--VVSSHQIPHEQI--TPHPGWLEHDPEEILRNVYKCMNEAI---KKLREKGPSF 72 (504)
T ss_pred cEEEEEecCCCceEEEEECC--CCC--EEEEEEEeeccc--CCCCCeEeeCHHHHHHHHHHHHHHHH---HHcCCCCccC
Confidence 36889999999999999973 464 333333333221 11122 223333 445555565543 33344333
Q ss_pred cEEEEeehHhhh
Q 014133 88 HTRAVATAAVRA 99 (430)
Q Consensus 88 ~i~~vATsA~R~ 99 (430)
+|.+|+.++.+.
T Consensus 73 ~I~aIgis~q~~ 84 (504)
T PTZ00294 73 KIKAIGITNQRE 84 (504)
T ss_pred ceEEEEeecCcc
Confidence 688888877643
No 118
>PRK09698 D-allose kinase; Provisional
Probab=75.49 E-value=81 Score=30.55 Aligned_cols=137 Identities=15% Similarity=0.155 Sum_probs=80.7
Q ss_pred CCeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEE
Q 014133 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRA 91 (430)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (430)
...+..||||...+++.+++. +|. ++.+.+.++. . ..+++.++.+.+.+++|.+-.. ..+ .-.+
T Consensus 3 ~~~~lgidig~t~i~~~l~d~--~g~--i~~~~~~~~~--~------~~~~~~~~~l~~~i~~~~~~~~-~~i---~gig 66 (302)
T PRK09698 3 KNVVLGIDMGGTHIRFCLVDA--EGE--ILHCEKKRTA--E------VIAPDLVSGLGEMIDEYLRRFN-ARC---HGIV 66 (302)
T ss_pred ccEEEEEEcCCcEEEEEEEcC--CCC--EEEEEEeCCc--c------ccchHHHHHHHHHHHHHHHHcC-CCe---eEEE
Confidence 356788999999999999875 353 4444333321 1 1234557777777777754321 112 2345
Q ss_pred EeehHhhh--------cCC-------hHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceE
Q 014133 92 VATAAVRA--------AEN-------KDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTE 156 (430)
Q Consensus 92 vATsA~R~--------A~N-------~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStE 156 (430)
||+...=+ ..| .-.+.+.+++++|++|.+.+.-.=+-+.-.- .......+.+.+.+|.| +-
T Consensus 67 ia~pG~vd~~~g~i~~~~~~~~~~~~~~~l~~~l~~~~~~pv~v~NDa~aaa~~E~~---~~~~~~~~~~~v~lgtG-IG 142 (302)
T PRK09698 67 MGFPALVSKDRRTVISTPNLPLTALDLYDLADKLENTLNCPVFFSRDVNLQLLWDVK---ENNLTQQLVLGAYLGTG-MG 142 (302)
T ss_pred EeCCcceeCCCCEEEecCCCCccccccCCHHHHHHHHhCCCEEEcchHhHHHHHHHH---hcCCCCceEEEEEecCc-eE
Confidence 55554322 122 2346788889999999998876544432211 11112246888888876 55
Q ss_pred EEeeeCCeEeee
Q 014133 157 FVIGKRGKVVFC 168 (430)
Q Consensus 157 l~~~~~~~~~~~ 168 (430)
..++.+|++...
T Consensus 143 ~giv~~G~~~~G 154 (302)
T PRK09698 143 FAVWMNGAPWTG 154 (302)
T ss_pred EEEEECCEEeeC
Confidence 566778877653
No 119
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=75.13 E-value=6.3 Score=39.09 Aligned_cols=100 Identities=22% Similarity=0.288 Sum_probs=52.7
Q ss_pred HHcCCCCccEEEEeehHhhh--cCChHHHHHHHH---HHhCC-------------ceeeeChHHHHHHHHhhhhccCCCC
Q 014133 80 QSHNISRDHTRAVATAAVRA--AENKDEFVECVR---EKVGF-------------EVDVLTGEQEAKFVYMGVLQFLPVF 141 (430)
Q Consensus 80 ~~~~v~~~~i~~vATsA~R~--A~N~~~fl~~i~---~~tGl-------------~i~vIsg~eEA~l~~~gv~~~~~~~ 141 (430)
..-|+++.+|..+.|==+.+ ..+.+...+.|+ ...-. +++|+...-=|.+.++.- +. .
T Consensus 87 ~~~G~~~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~~---~~-~ 162 (318)
T PF06406_consen 87 LKAGLEPQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALMD---LD-E 162 (318)
T ss_dssp HHHS--SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHHT---S--T
T ss_pred HHcCCCCCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHHh---hc-c
Confidence 34477766787777755443 223333333332 22222 244444444455554433 22 1
Q ss_pred CCceEEEEeCCCceEEEeeeCCeE--eee-eeeehhHHHHHHhhc
Q 014133 142 DRLVLSVDIGGGSTEFVIGKRGKV--VFC-ESVNLGHVSLSEKFG 183 (430)
Q Consensus 142 ~~~~lv~DIGGGStEl~~~~~~~~--~~~-~Sl~lG~vrl~e~f~ 183 (430)
.+..+|+||||+.|.+..+.++.. ... .+.++|...+++...
T Consensus 163 ~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~ 207 (318)
T PF06406_consen 163 DESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIA 207 (318)
T ss_dssp TSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHH
T ss_pred cCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHH
Confidence 345899999999999999887532 222 345789999888754
No 120
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=74.43 E-value=11 Score=39.82 Aligned_cols=75 Identities=11% Similarity=0.074 Sum_probs=52.5
Q ss_pred CeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEE
Q 014133 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSS-CSISTQSQARSVESLLMFRDIIQSHNISRDHTRA 91 (430)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~-g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (430)
+.+-.||+||.|.|-.|++.. +| +.+....++++....-... -.=|.+-++..|.+++... ++.+|++.+|..
T Consensus 3 ~~~iGvDvGTgSaRA~v~D~~-~G--~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v---~~agv~~~~V~g 76 (544)
T COG1069 3 AYVIGVDVGTGSARAGVFDCQ-TG--TLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVV---AKAGVDPADVVG 76 (544)
T ss_pred cEEEEEeecCCceeEEEEEcC-CC--cchhhcccceeccccCccccccCHHHHHHHHHHHHHHHH---HHcCCChhHeeE
Confidence 566789999999999999975 45 3556666666554432111 2346788888888888765 455898877887
Q ss_pred Ee
Q 014133 92 VA 93 (430)
Q Consensus 92 vA 93 (430)
++
T Consensus 77 IG 78 (544)
T COG1069 77 IG 78 (544)
T ss_pred EE
Confidence 76
No 121
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=73.76 E-value=14 Score=39.41 Aligned_cols=73 Identities=16% Similarity=0.239 Sum_probs=41.3
Q ss_pred EEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCCccEEE
Q 014133 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHTRA 91 (430)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (430)
+..||+||.++|..+++. +|+ ++.....++.+-. ...| ...++. .+.++++++ +++++.+++..+|.+
T Consensus 2 ~lgID~GTts~Ka~l~d~--~G~--i~~~~~~~~~~~~--~~~g~~eqdp~~~~~~~~~~i~---~~~~~~~~~~~~I~~ 72 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDS--TGD--ILALAAQNIKTWT--PSSGLEGQSSVYIWQAICNCVK---QVLAESKVDPNSVKG 72 (541)
T ss_pred EEEEEecCcCEEEEEEcC--CCC--EEEEEEeeeeecc--CCCCcccCCHHHHHHHHHHHHH---HHHHHcCCChhheEE
Confidence 568999999999999973 564 3333333332211 1112 223443 334444444 455666766556888
Q ss_pred EeehH
Q 014133 92 VATAA 96 (430)
Q Consensus 92 vATsA 96 (430)
++-++
T Consensus 73 Igis~ 77 (541)
T TIGR01315 73 IGFDA 77 (541)
T ss_pred EEecc
Confidence 88554
No 122
>PLN02295 glycerol kinase
Probab=72.20 E-value=15 Score=39.02 Aligned_cols=76 Identities=11% Similarity=0.159 Sum_probs=42.8
Q ss_pred EEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCC--CCCHHHH-HHHHHHHHHHHHHHHHcCCCCcc---
Q 014133 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQSQ-ARSVESLLMFRDIIQSHNISRDH--- 88 (430)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e~i-~r~~~~L~~f~~~~~~~~v~~~~--- 88 (430)
+..||+||.|+|..+++ .+|+. +.....+..+- ....| ...++.+ +.+++++++ +++..++++.+
T Consensus 2 vlgID~GTts~Ka~l~d--~~G~~--~~~~~~~~~~~--~~~~G~~Eqdp~~~w~~~~~~i~~---~~~~~~~~~~~i~~ 72 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYD--RDARP--VASHQVEFTQI--YPQAGWVEHDPMEILESVLTCIAK---ALEKAAAKGHNVDS 72 (512)
T ss_pred EEEEecCCCceEEEEEC--CCCCE--EEEEeeccccc--CCCCCcEeeCHHHHHHHHHHHHHH---HHHHcCCCcccccc
Confidence 56899999999999997 35654 33333332221 11222 2344443 344455544 45555665544
Q ss_pred -EEEEeehHhhh
Q 014133 89 -TRAVATAAVRA 99 (430)
Q Consensus 89 -i~~vATsA~R~ 99 (430)
|.+++-++.+.
T Consensus 73 ~i~aIg~s~q~~ 84 (512)
T PLN02295 73 GLKAIGITNQRE 84 (512)
T ss_pred ceEEEEEecCcc
Confidence 68888666543
No 123
>PRK13317 pantothenate kinase; Provisional
Probab=71.36 E-value=36 Score=33.13 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=41.1
Q ss_pred hCCceeeeChHHHHHHHHhhhhccC---CCCCCceEEEEeCCCceEEEeeeCCeEeeeeeeehhHHHHHHh
Q 014133 114 VGFEVDVLTGEQEAKFVYMGVLQFL---PVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEK 181 (430)
Q Consensus 114 tGl~i~vIsg~eEA~l~~~gv~~~~---~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~Sl~lG~vrl~e~ 181 (430)
.|+++.= .+|-.-...|+...+ ..+..+.+++++|+|-. ++.+++++....-.-.+|--.+...
T Consensus 67 ~~~~~~~---v~E~~a~~~g~~~l~~~~~~~~~~~~i~~iG~g~s-i~~~~g~~~~r~~Gt~iGGgt~~gL 133 (277)
T PRK13317 67 YGYPIAE---FVEFEATGLGVRYLLKEEGHDLNDYIFTNIGTGTS-IHYVDGNSQRRVGGTGIGGGTIQGL 133 (277)
T ss_pred cCCCeee---eHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCceE-EEEEeCCceEEEccccccHHHHHHH
Confidence 4555321 466666666665544 11245688999999855 8888888777777777777555443
No 124
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=71.19 E-value=25 Score=35.58 Aligned_cols=135 Identities=17% Similarity=0.118 Sum_probs=75.1
Q ss_pred CCeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEE
Q 014133 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRA 91 (430)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (430)
.-.+.-||.||.+.++++.+- +. .+.+.+. ....+. +. +.+++++-. +..+.+-++|..
T Consensus 134 ~~~~LGID~GSTtTK~VLm~d---~~-~I~~~~~---~~t~g~-------p~----~~~~l~~~l---e~l~~~~~~I~~ 192 (396)
T COG1924 134 GMYTLGIDSGSTTTKAVLMED---GK-EILYGFY---VSTKGR-------PI----AEKALKEAL---EELGEKLEEILG 192 (396)
T ss_pred CcEEEEEecCCcceeEEEEeC---CC-eEEEEEE---EcCCCC-------hh----HHHHHHHHH---HHcccChheeee
Confidence 356789999999999999963 22 3333321 111221 11 233333322 333333123443
Q ss_pred Ee-ehHhhhcCChHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeCCeEee---
Q 014133 92 VA-TAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVF--- 167 (430)
Q Consensus 92 vA-TsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~--- 167 (430)
++ |-==|+.-+...+.|.+ ..|----++|+....|. .+ .|+||||-=+-.+..+||.+..
T Consensus 193 ~~~TGYGR~~v~~~~~aD~~-------------~~Ei~ah~kgA~~f~p~--~d-tIiDIGGQD~K~i~i~dG~v~df~m 256 (396)
T COG1924 193 LGVTGYGRNLVGAALGADKV-------------VVEISAHAKGARYFAPD--VD-TVIDIGGQDSKVIKLEDGKVDDFTM 256 (396)
T ss_pred eeeecccHHHhhhhhcCCcc-------------eeeeehhHHHHHHhCCC--Cc-EEEEecCcceeEEEEeCCeeeeeEe
Confidence 43 33334433333333332 23444556787776663 22 8999999999999999998753
Q ss_pred eeeeehhHHHHHHhhc
Q 014133 168 CESVNLGHVSLSEKFG 183 (430)
Q Consensus 168 ~~Sl~lG~vrl~e~f~ 183 (430)
..-..-|+-|+.|.+.
T Consensus 257 N~~CAAGtGrFLE~~A 272 (396)
T COG1924 257 NDKCAAGTGRFLEVIA 272 (396)
T ss_pred ccccccccchHHHHHH
Confidence 1223457777777665
No 125
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=69.92 E-value=3.5 Score=46.86 Aligned_cols=28 Identities=25% Similarity=0.144 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhhhcccCCCCcchhhhhh
Q 014133 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHI 427 (430)
Q Consensus 399 r~lL~~Aa~LhdiG~~I~~~~h~~Hs~yi 427 (430)
..+|.+||+|||||+--.. +|.+-++.+
T Consensus 497 ~~lL~lAaLlHDIGKg~~~-~Hs~~Ga~~ 524 (895)
T PRK00275 497 PELLYIAGLYHDIGKGRGG-DHSELGAVD 524 (895)
T ss_pred HHHHHHHHHHHhhhcCCCC-CHHHHHHHH
Confidence 3589999999999997643 565555544
No 126
>PRK05007 PII uridylyl-transferase; Provisional
Probab=69.69 E-value=4.5 Score=45.93 Aligned_cols=29 Identities=21% Similarity=0.122 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHhhhhcccCCCCcchhhhhh
Q 014133 398 DLEYLEAACLLHNIGHFTSKKGYHKQSCHI 427 (430)
Q Consensus 398 ~r~lL~~Aa~LhdiG~~I~~~~h~~Hs~yi 427 (430)
.+.+|.+||+|||||+-... +|.+-++.+
T Consensus 497 ~~~lL~lAaLlHDIGKg~~~-dHs~~Ga~~ 525 (884)
T PRK05007 497 KKELLLLAALFHDIAKGRGG-DHSILGAQD 525 (884)
T ss_pred ChhHHHHHHHHHhhcCCCCC-ChHHHHHHH
Confidence 35789999999999996533 455544443
No 127
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=69.39 E-value=4.6 Score=45.24 Aligned_cols=39 Identities=18% Similarity=0.078 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhccc
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFT 415 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~~I 415 (430)
+|...|+++|.++ .+..+++ ....++++|++|||+|+|-
T Consensus 678 eHl~~va~lA~~f----a~~~gl~------------~~~~~~~laGllHDlGK~~ 716 (844)
T TIGR02621 678 DHLDNVFEVAKNF----VAKLGLG------------DLDKAVRQAARLHDLGKQR 716 (844)
T ss_pred HHHHHHHHHHHHH----HHHcCch------------HHHHHHHHHHHhcccccCC
Confidence 7888999888874 3333331 1235689999999999974
No 128
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=67.79 E-value=5.1 Score=45.30 Aligned_cols=29 Identities=21% Similarity=0.126 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHhhhhcccCCCCcchhhhhh
Q 014133 398 DLEYLEAACLLHNIGHFTSKKGYHKQSCHI 427 (430)
Q Consensus 398 ~r~lL~~Aa~LhdiG~~I~~~~h~~Hs~yi 427 (430)
.+.+|.+||+|||||+--.. +|.+-++-+
T Consensus 472 ~~~~L~lAaLlHDIGKG~~~-dHs~~Ga~~ 500 (854)
T PRK01759 472 DRTLLYIAALFHDIAKGRGG-DHAELGAVD 500 (854)
T ss_pred CHHHHHHHHHHHhhcCCCCC-ChhHHHHHH
Confidence 35789999999999996543 455555443
No 129
>PRK04374 PII uridylyl-transferase; Provisional
Probab=67.78 E-value=4.6 Score=45.71 Aligned_cols=27 Identities=22% Similarity=0.121 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhhcccCCCCcchhhhhh
Q 014133 400 EYLEAACLLHNIGHFTSKKGYHKQSCHI 427 (430)
Q Consensus 400 ~lL~~Aa~LhdiG~~I~~~~h~~Hs~yi 427 (430)
.+|.+|++|||||+-... +|.+-++.+
T Consensus 487 ~lL~lAaLlHDIGKg~~~-dHs~~Ga~~ 513 (869)
T PRK04374 487 ELLLLAGLFHDIAKGRGG-DHSELGAVD 513 (869)
T ss_pred cHHHHHHHHHhccCCCCC-ChHHHhHHH
Confidence 489999999999997643 555555544
No 130
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=66.78 E-value=69 Score=30.39 Aligned_cols=133 Identities=13% Similarity=-0.005 Sum_probs=74.4
Q ss_pred EEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEee
Q 014133 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (430)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (430)
+..||||.+.+|+.+++.. + +++.+.+.++. . .-.++.++.+.+.++++.... +.. .-.+||+
T Consensus 2 ~lgidiggt~i~~~l~d~~--g--~i~~~~~~~~~--~------~~~~~~~~~i~~~i~~~~~~~---~~~--~gIgv~~ 64 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDEN--L--QRIWHKRVPTP--R------EDYPQLLQILRDLTEEADTYC---GVQ--GSVGIGI 64 (256)
T ss_pred EEEEEECCCcEEEEEECCC--C--CEEEEEEecCC--C------cCHHHHHHHHHHHHHHHHhhc---CCC--ceEEEEe
Confidence 5789999999999999753 4 34444444321 1 113455666666666654321 110 1233333
Q ss_pred hHhh--------hc----CChHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeC
Q 014133 95 AAVR--------AA----ENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKR 162 (430)
Q Consensus 95 sA~R--------~A----~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~ 162 (430)
..+= .+ -+.-.+.+.++++++++|.+-+.-.-+-+.-.-. ......++.+.+-+|.| +-..++-+
T Consensus 65 pG~vd~~~g~i~~~~~~~w~~~~l~~~l~~~~~~pV~leNDanaaAlaE~~~--g~~~~~~~~v~i~lgtG-iG~giv~~ 141 (256)
T PRK13311 65 PGLPNADDGTVFTANVPSAMGQPLQADLSRLIQREVRIDNDANCFALSEAWD--PEFRTYPTVLGLILGTG-VGGGLIVN 141 (256)
T ss_pred cCcEECCCCEEEccCCCcccCCChHHHHHHHHCCCEEEEchhhHHHHHHHHh--cCCCCCCcEEEEEECcC-eEEEEEEC
Confidence 3311 11 1234678889999999999988776665543311 11111245777777754 44455666
Q ss_pred CeEee
Q 014133 163 GKVVF 167 (430)
Q Consensus 163 ~~~~~ 167 (430)
|++..
T Consensus 142 G~l~~ 146 (256)
T PRK13311 142 GSIVS 146 (256)
T ss_pred CEEec
Confidence 66654
No 131
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=66.68 E-value=13 Score=38.80 Aligned_cols=72 Identities=15% Similarity=0.236 Sum_probs=41.9
Q ss_pred EEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCC--CCCH-HHHHHHHHHHHHHHHHHHHcCCCCccEEEEe
Q 014133 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SIST-QSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (430)
Q Consensus 17 vIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~-e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (430)
.||+|++++|..+++. +|+ ++.....+..... ...| ..++ +-++.+++++++ ++++++.++.+|.+++
T Consensus 2 gIDiGtt~ik~~l~d~--~g~--i~~~~~~~~~~~~--~~~g~~e~d~~~~~~~l~~~i~~---~~~~~~~~~~~I~gIg 72 (481)
T TIGR01312 2 GIDLGTSGVKALLVDE--QGE--VIASGSAPHTVIS--PHPGWSEQDPEDWWDATEEAIKE---LLEQASEMGQDIKGIG 72 (481)
T ss_pred ceeecCcceEEEEECC--CCC--EEEEEeecccccC--CCCCCeeeCHHHHHHHHHHHHHH---HHHhcCCCcccEEEEE
Confidence 5999999999999974 454 4444444433211 1122 2333 334555555554 4566676656788888
Q ss_pred ehHh
Q 014133 94 TAAV 97 (430)
Q Consensus 94 TsA~ 97 (430)
-++.
T Consensus 73 vs~~ 76 (481)
T TIGR01312 73 ISGQ 76 (481)
T ss_pred EecC
Confidence 7743
No 132
>PRK03059 PII uridylyl-transferase; Provisional
Probab=66.65 E-value=6 Score=44.78 Aligned_cols=29 Identities=17% Similarity=0.024 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHhhhhcccCCCCcchhhhhh
Q 014133 398 DLEYLEAACLLHNIGHFTSKKGYHKQSCHI 427 (430)
Q Consensus 398 ~r~lL~~Aa~LhdiG~~I~~~~h~~Hs~yi 427 (430)
.+.+|.+||+|||||+--. .+|.+-++.+
T Consensus 476 ~~~lL~LAaLlHDIGKg~~-~~Hs~~GA~~ 504 (856)
T PRK03059 476 RPWLLYVAALFHDIAKGRG-GDHSTLGAVD 504 (856)
T ss_pred ChhHHHHHHHHHhhccCCC-CCchHHHHHH
Confidence 3578999999999999654 2455544443
No 133
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=66.38 E-value=6.9 Score=38.32 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=19.8
Q ss_pred CCceEEEEeCCCceEEEeeeCCeEeeeeee
Q 014133 142 DRLVLSVDIGGGSTEFVIGKRGKVVFCESV 171 (430)
Q Consensus 142 ~~~~lv~DIGGGStEl~~~~~~~~~~~~Sl 171 (430)
.++.+++||||-||.++++.+|++..+..-
T Consensus 76 ~~~~i~vDmGGTTtDi~~i~~G~p~~~~~~ 105 (290)
T PF01968_consen 76 LENAIVVDMGGTTTDIALIKDGRPEISSEG 105 (290)
T ss_dssp -SSEEEEEE-SS-EEEEEEETTEE------
T ss_pred CCCEEEEeCCCCEEEEEEEECCeeeccccc
Confidence 356999999999999999999998644333
No 134
>PRK15027 xylulokinase; Provisional
Probab=65.05 E-value=28 Score=36.48 Aligned_cols=75 Identities=15% Similarity=0.306 Sum_probs=39.8
Q ss_pred EEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHcCCCCccEEEEe
Q 014133 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQS-QARSVESLLMFRDIIQSHNISRDHTRAVA 93 (430)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (430)
+-.||+||.|+|..+++ .+|++ +...+.+..+...-...-..+++. .+.+++++++ ++++... ++|.+++
T Consensus 2 ~lgID~GTts~Ka~l~d--~~G~v--va~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~---l~~~~~~--~~I~aI~ 72 (484)
T PRK15027 2 YIGIDLGTSGVKVILLN--EQGEV--VASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKA---LGDQHSL--QDVKALG 72 (484)
T ss_pred EEEEEecccceEEEEEc--CCCCE--EEEEeecccccCCCCCccccCHHHHHHHHHHHHHH---HHHhCCc--cceeEEE
Confidence 56899999999999997 35653 433333332211100011233333 2333333444 4444433 4688888
Q ss_pred ehHhh
Q 014133 94 TAAVR 98 (430)
Q Consensus 94 TsA~R 98 (430)
-++.+
T Consensus 73 is~q~ 77 (484)
T PRK15027 73 IAGQM 77 (484)
T ss_pred EecCC
Confidence 77654
No 135
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=63.88 E-value=40 Score=29.16 Aligned_cols=95 Identities=13% Similarity=0.188 Sum_probs=61.7
Q ss_pred eEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEe
Q 014133 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (430)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (430)
+++.|+|=+|..++.+.+.+ +|.+.+.+-....+.|..+.. .+.+ .+--..|++++++|+|+ +|.
T Consensus 2 ~vCGVELkgneaii~ll~~~-~~~~~~pdcr~~k~~l~~~~~------~~~v---r~Fq~~f~kl~~dy~Vd--~Vv--- 66 (138)
T PF11215_consen 2 KVCGVELKGNEAIICLLSLD-DGLFQLPDCRVRKFSLSDDNS------TEEV---RKFQFTFAKLMEDYKVD--KVV--- 66 (138)
T ss_pred eEEEEEEecCeEEEEEEecC-CCceECCccceeEEEcCCCcc------HHHH---HHHHHHHHHHHHHcCCC--EEE---
Confidence 57889999999999999865 677887776666677776542 2333 34445688899999995 452
Q ss_pred ehHhhh-cCC------hHH-HHHHHHHHh-CCceeeeChHHH
Q 014133 94 TAAVRA-AEN------KDE-FVECVREKV-GFEVDVLTGEQE 126 (430)
Q Consensus 94 TsA~R~-A~N------~~~-fl~~i~~~t-Gl~i~vIsg~eE 126 (430)
+|+ +.. +-- -++.+-+-. +++|+++|+..-
T Consensus 67 ---Ik~R~~KGKfAGga~~FKmEaaIQL~~~~~V~lvs~~~i 105 (138)
T PF11215_consen 67 ---IKERATKGKFAGGAVGFKMEAAIQLIDDVEVELVSPATI 105 (138)
T ss_pred ---EEecccCCCccCCchhHHHHHHHHhcCCCcEEEECHHHH
Confidence 222 111 112 234333333 888888888653
No 136
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=63.83 E-value=7.1 Score=40.21 Aligned_cols=18 Identities=22% Similarity=0.229 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhhhcccCC
Q 014133 400 EYLEAACLLHNIGHFTSK 417 (430)
Q Consensus 400 ~lL~~Aa~LhdiG~~I~~ 417 (430)
..|++||+|||+|+-...
T Consensus 246 l~lr~AaLlHDlGK~~t~ 263 (409)
T PRK10885 246 LDVRFAALCHDLGKGLTP 263 (409)
T ss_pred HHHHHHHHhccccCCCCC
Confidence 468999999999997643
No 137
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=63.34 E-value=3.4 Score=45.51 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHhhhhcc
Q 014133 398 DLEYLEAACLLHNIGHF 414 (430)
Q Consensus 398 ~r~lL~~Aa~LhdiG~~ 414 (430)
+|.||.+||++||||+-
T Consensus 482 ~~elLylAaLfHDIaKG 498 (867)
T COG2844 482 KRELLYLAALFHDIAKG 498 (867)
T ss_pred ChhHHHHHHHHHHhhcC
Confidence 46899999999999985
No 138
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=61.56 E-value=1.5e+02 Score=29.86 Aligned_cols=27 Identities=19% Similarity=0.491 Sum_probs=21.7
Q ss_pred CCceEEEEeCCCceEEEeeeCCeEeeee
Q 014133 142 DRLVLSVDIGGGSTEFVIGKRGKVVFCE 169 (430)
Q Consensus 142 ~~~~lv~DIGGGStEl~~~~~~~~~~~~ 169 (430)
+.+.+++-+|+|.. .....+|+++...
T Consensus 173 ~~~~I~~hLGtGig-~~ai~~Gk~vdgs 199 (351)
T TIGR02707 173 EMNLIVAHMGGGIS-VAAHRKGRVIDVN 199 (351)
T ss_pred cCCEEEEEeCCCce-eeeEECCEEEEcC
Confidence 44799999999998 7788888876543
No 139
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=61.35 E-value=16 Score=37.72 Aligned_cols=157 Identities=24% Similarity=0.332 Sum_probs=71.5
Q ss_pred EEEEecccceeeeEEEEeCCCc-EEEEEeecceeeccCCCCCC--CCCCHHHHH----HHHHHHHH-HHHHHHHcCCCCc
Q 014133 16 ASIDMGTSSFKLLIIRAYPNGK-FLTIDTLKQPVILGRDLSSS--CSISTQSQA----RSVESLLM-FRDIIQSHNISRD 87 (430)
Q Consensus 16 AvIDIGSNsirL~I~e~~~~~~-~~~i~~~k~~vrLg~~~~~~--g~ls~e~i~----r~~~~L~~-f~~~~~~~~v~~~ 87 (430)
.+|||||.++.+.+++.. +|. +...-..+-....|.|+-.. -..+++..+ .+++.|++ +.++|.+.+++++
T Consensus 4 iAvDiGTTti~~~L~dl~-~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~gi~~~ 82 (412)
T PF14574_consen 4 IAVDIGTTTIAAYLVDLE-TGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAGISPE 82 (412)
T ss_dssp EEEEE-SSEEEEEEEETT-T--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT--GG
T ss_pred EEEEcchhheeeEEEECC-CCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 589999999999999986 454 33444455556788876321 001222222 22333444 3456666687765
Q ss_pred c---EEEEeehHhh------------hcCChHHHHHHH---HHHhCCc------eeeeC---hHHHHHHHHhhhh-ccCC
Q 014133 88 H---TRAVATAAVR------------AAENKDEFVECV---REKVGFE------VDVLT---GEQEAKFVYMGVL-QFLP 139 (430)
Q Consensus 88 ~---i~~vATsA~R------------~A~N~~~fl~~i---~~~tGl~------i~vIs---g~eEA~l~~~gv~-~~~~ 139 (430)
+ +.+++..++- .++=...|.+.. -.+.|++ |.++. +--=+-. ..|+. ..+.
T Consensus 83 ~I~~i~i~GNt~M~hLllGl~~~~L~~~Pf~p~~~~~~~~~a~~lgl~~~~~~~v~~~P~i~~fVG~Di-vAgl~a~~~~ 161 (412)
T PF14574_consen 83 DIYEIVIVGNTTMLHLLLGLDPEGLGRAPFVPVFRGGVEIPAAELGLEINPDARVYILPNISGFVGADI-VAGLLATGMD 161 (412)
T ss_dssp GEEEEEEEE-HHHHHHHHT---GGGSSTTT--S-S----EEHHHHT-SS-TTSEEEE----BTTB-HHH-HHHHHHHTCC
T ss_pred HeEEEEEEecHHHHHHHcCCChHHhccCCcccccCCCcEEeHHHhCcccCCCCEEEEcCcccccccHHH-HHHHHhcCcc
Confidence 5 4556666552 221111111111 1223442 22211 1100000 01111 1122
Q ss_pred CCCCceEEEEeCCCceEEEeeeCCeEeeeeeeehhHH
Q 014133 140 VFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHV 176 (430)
Q Consensus 140 ~~~~~~lv~DIGGGStEl~~~~~~~~~~~~Sl~lG~v 176 (430)
..+++.|++|||. +.|+++++++++ ++.|-|-|+.
T Consensus 162 ~~~~~~LliDiGT-NgEivL~~~~~~-~a~S~AAGPA 196 (412)
T PF14574_consen 162 ESDEPSLLIDIGT-NGEIVLGNGGKL-LACSTAAGPA 196 (412)
T ss_dssp C-SS-EEEEEESS-CEEEEEE-SS-E-EEEEEE--TC
T ss_pred cCCCcEEEEEecC-CeEEEEecCCEE-EEEeccCChh
Confidence 2457799999997 679999999776 5779999984
No 140
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=60.22 E-value=1.4e+02 Score=28.89 Aligned_cols=132 Identities=12% Similarity=0.073 Sum_probs=73.9
Q ss_pred EEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEee
Q 014133 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (430)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (430)
+..||||.+.+++.+++.+ |. ++.+.+.++ .. .-.++.++.+.+.++++.. +++.. .-.+||.
T Consensus 2 ~lgidig~t~i~~~l~d~~--g~--i~~~~~~~~--~~------~~~~~~~~~i~~~i~~~~~---~~~~~--~~igia~ 64 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEK--LE--LQWEERVPT--PR------DSYDAFLDAVCELVAEADQ---RFGCK--GSVGIGI 64 (303)
T ss_pred eEEEEeCCCcEEEEEECCC--Cc--EEEEEEecC--CC------cCHHHHHHHHHHHHHHHHh---hcCCc--ceEEEeC
Confidence 4689999999999998753 43 444333222 11 1134555556666665542 22221 1234444
Q ss_pred hHhhh-------cCC-----hHHHHHHHHHHhCCceeeeChHHHHHHHH--hhhhccCCCCCCceEEEEeCCCceEEEee
Q 014133 95 AAVRA-------AEN-----KDEFVECVREKVGFEVDVLTGEQEAKFVY--MGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (430)
Q Consensus 95 sA~R~-------A~N-----~~~fl~~i~~~tGl~i~vIsg~eEA~l~~--~gv~~~~~~~~~~~lv~DIGGGStEl~~~ 160 (430)
...=+ +.| .-.+.+.+++++|++|.+-+.-.=+-+.- .|... ..++.+.+.+|.| +-..++
T Consensus 65 pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pV~ieNDa~aaalaE~~~g~~~----~~~~~~~l~~gtG-iG~giv 139 (303)
T PRK13310 65 PGMPETEDGTLYAANVPAASGKPLRADLSARLGRDVRLDNDANCFALSEAWDDEFT----QYPLVMGLILGTG-VGGGLV 139 (303)
T ss_pred CCcccCCCCEEeccCcccccCCcHHHHHHHHHCCCeEEeccHhHHHHHHhhhcccc----CCCcEEEEEecCc-eEEEEE
Confidence 32211 112 23677889999999999887765443331 22211 1246788888864 455566
Q ss_pred eCCeEeee
Q 014133 161 KRGKVVFC 168 (430)
Q Consensus 161 ~~~~~~~~ 168 (430)
-+|++...
T Consensus 140 ~~G~l~~G 147 (303)
T PRK13310 140 FNGKPISG 147 (303)
T ss_pred ECCEEeeC
Confidence 67777654
No 141
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=60.18 E-value=13 Score=38.35 Aligned_cols=81 Identities=11% Similarity=0.071 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHH-HHHHHH--hhhhccCCCCCCceEE
Q 014133 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFVY--MGVLQFLPVFDRLVLS 147 (430)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~e-EA~l~~--~gv~~~~~~~~~~~lv 147 (430)
++++.-+.+++++.+ ++.+|....+++..-.+.+.+.++ +-|+++.+.++-+ |..+.- .++..... .+.-+|
T Consensus 10 ~~~~l~~~l~~~g~~--~vlivt~~~~~~~g~~~~v~~~L~-~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~--~~~D~I 84 (414)
T cd08190 10 VTAEVGMDLKNLGAR--RVCLVTDPNLAQLPPVKVVLDSLE-AAGINFEVYDDVRVEPTDESFKDAIAFAKK--GQFDAF 84 (414)
T ss_pred HHHHHHHHHHHcCCC--eEEEEECcchhhcchHHHHHHHHH-HcCCcEEEeCCCCCCcCHHHHHHHHHHHHh--cCCCEE
Confidence 345555566677774 677777776766444566666665 4589998887522 222111 11111111 122379
Q ss_pred EEeCCCceE
Q 014133 148 VDIGGGSTE 156 (430)
Q Consensus 148 ~DIGGGStE 156 (430)
+-|||||+=
T Consensus 85 IaiGGGSvi 93 (414)
T cd08190 85 VAVGGGSVI 93 (414)
T ss_pred EEeCCccHH
Confidence 999999975
No 142
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=60.16 E-value=9 Score=39.48 Aligned_cols=16 Identities=13% Similarity=0.144 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhhhccc
Q 014133 400 EYLEAACLLHNIGHFT 415 (430)
Q Consensus 400 ~lL~~Aa~LhdiG~~I 415 (430)
..+++||+|||+|+..
T Consensus 247 l~lR~AaLlHDiGK~~ 262 (417)
T PRK13298 247 IDIRFSYLCQFLGSMI 262 (417)
T ss_pred HHHHHHHHHhhhcCCC
Confidence 5689999999999964
No 143
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=60.04 E-value=30 Score=36.57 Aligned_cols=74 Identities=16% Similarity=0.142 Sum_probs=40.1
Q ss_pred EEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCCccEEE
Q 014133 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHTRA 91 (430)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (430)
+..||+||.++|..+++ .+|++ +...+.+...- ....| ...++. .+.+++++++ +++..+.+ .+|.+
T Consensus 2 ~lgiDiGtt~~K~~l~d--~~g~i--~~~~~~~~~~~--~~~~g~~e~d~~~~~~~~~~~i~~---~~~~~~~~-~~I~~ 71 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFE--ENGKI--VAKSSIGYPLY--TPASGMAEENPEEIFEAVLVTIRE---VSINLEDE-DEILF 71 (505)
T ss_pred EEEEeccccceEEEEEc--CCCCE--EEEEEeecccc--cCCCCCeeeCHHHHHHHHHHHHHH---HHHhCCCc-CceEE
Confidence 56899999999999997 35643 33333322211 11112 223333 3344444444 44544543 45888
Q ss_pred EeehHhh
Q 014133 92 VATAAVR 98 (430)
Q Consensus 92 vATsA~R 98 (430)
++-++.+
T Consensus 72 Igis~~~ 78 (505)
T TIGR01314 72 VSFSTQM 78 (505)
T ss_pred EEEeccc
Confidence 8876654
No 144
>PRK09557 fructokinase; Reviewed
Probab=58.32 E-value=96 Score=30.09 Aligned_cols=133 Identities=17% Similarity=0.150 Sum_probs=72.3
Q ss_pred EEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEee
Q 014133 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (430)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (430)
+-.||||.+.+++.+++. +|. ++.+.+.++. . .-.++.++.+.+.++++. ..++. ..-.++|+
T Consensus 2 ~lgidig~t~~~~~l~d~--~g~--i~~~~~~~~~--~------~~~~~~~~~i~~~i~~~~---~~~~~--~~gIgi~~ 64 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDD--AGE--ELFRKRLPTP--R------DDYQQTIEAIATLVDMAE---QATGQ--RGTVGVGI 64 (301)
T ss_pred EEEEEECCCcEEEEEECC--CCC--EEEEEEecCC--C------CCHHHHHHHHHHHHHHHH---hhcCC--ceEEEecC
Confidence 467999999999999875 343 3444332221 0 112344444444444443 22221 12245555
Q ss_pred hHhhhcC------------ChHHHHHHHHHHhCCceeeeChHHHHHHHH--hhhhccCCCCCCceEEEEeCCCceEEEee
Q 014133 95 AAVRAAE------------NKDEFVECVREKVGFEVDVLTGEQEAKFVY--MGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (430)
Q Consensus 95 sA~R~A~------------N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~--~gv~~~~~~~~~~~lv~DIGGGStEl~~~ 160 (430)
...=+.+ +.-.+.+.+++++|+++.+.+.-.=+-+.- .|.. ...++.+.+.+|.| +-..++
T Consensus 65 pG~vd~~~g~i~~~~~~~~~~~~l~~~l~~~~~~pv~~~NDa~aaA~aE~~~g~~----~~~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 65 PGSISPYTGLVKNANSTWLNGQPLDKDLSARLNREVRLANDANCLAVSEAVDGAA----AGKQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred cccCcCCCCeEEecCCccccCCCHHHHHHHHHCCCEEEccchhHHHHHHHHhccc----CCCCcEEEEEEccc-eEEEEE
Confidence 4432211 334567788899999999887655443332 1221 11245778888744 445556
Q ss_pred eCCeEeeee
Q 014133 161 KRGKVVFCE 169 (430)
Q Consensus 161 ~~~~~~~~~ 169 (430)
-+|++....
T Consensus 140 ~~G~l~~G~ 148 (301)
T PRK09557 140 INGRVHIGG 148 (301)
T ss_pred ECCEEEecC
Confidence 677776543
No 145
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=57.28 E-value=27 Score=35.51 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHHH-HHH--HHhhhhccCCCCCCceEE
Q 014133 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQE-AKF--VYMGVLQFLPVFDRLVLS 147 (430)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~eE-A~l--~~~gv~~~~~~~~~~~lv 147 (430)
++++..+.++.++.+ ++.+|....+++..-.+.+.+.++ +.|+++.+.++-++ ..+ ...++..... .+.-.|
T Consensus 15 ~l~~l~~~l~~~g~~--~~livt~~~~~~~~~~~~v~~~L~-~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~d~I 89 (377)
T cd08188 15 ALKLAGRYARRLGAK--KVLLVSDPGVIKAGWVDRVIESLE-EAGLEYVVFSDVSPNPRDEEVMAGAELYLE--NGCDVI 89 (377)
T ss_pred HHHHHHHHHHHcCCC--eEEEEeCcchhhCccHHHHHHHHH-HcCCeEEEeCCCCCCCCHHHHHHHHHHHHh--cCCCEE
Confidence 345555566777774 677777666766545566666664 55888888875432 111 1112211111 122489
Q ss_pred EEeCCCceE
Q 014133 148 VDIGGGSTE 156 (430)
Q Consensus 148 ~DIGGGStE 156 (430)
+=|||||+=
T Consensus 90 IaiGGGsvi 98 (377)
T cd08188 90 IAVGGGSPI 98 (377)
T ss_pred EEeCCchHH
Confidence 999999863
No 146
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=56.97 E-value=12 Score=42.27 Aligned_cols=30 Identities=30% Similarity=0.223 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHhhhhcccCCCCcchhhhhhh
Q 014133 398 DLEYLEAACLLHNIGHFTSKKGYHKQSCHII 428 (430)
Q Consensus 398 ~r~lL~~Aa~LhdiG~~I~~~~h~~Hs~yiI 428 (430)
.+.+|.+||+|||||+-- ..+|.+-++.+.
T Consensus 464 ~~~~L~lAaLlHDiGKg~-~~~H~~~Ga~~a 493 (850)
T TIGR01693 464 DPELLYLAALLHDIGKGR-GGDHSVLGAEDA 493 (850)
T ss_pred CHHHHHHHHHHHHHhcCC-CCCHHHHHHHHH
Confidence 357899999999999953 345666665543
No 147
>PRK05092 PII uridylyl-transferase; Provisional
Probab=56.44 E-value=8.7 Score=43.96 Aligned_cols=28 Identities=25% Similarity=0.218 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhhhcccCCCCcchhhhhh
Q 014133 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHI 427 (430)
Q Consensus 399 r~lL~~Aa~LhdiG~~I~~~~h~~Hs~yi 427 (430)
+.+|.+||+|||||+--. .+|.+-++.+
T Consensus 530 ~~~L~lAaLlHDIGKg~~-~dHs~~Ga~~ 557 (931)
T PRK05092 530 RRALYVAVLLHDIAKGRP-EDHSIAGARI 557 (931)
T ss_pred HHHHHHHHHHHHhhcCCC-CCHHHHHHHH
Confidence 578999999999999542 3455555444
No 148
>PRK13324 pantothenate kinase; Reviewed
Probab=56.39 E-value=1.9e+02 Score=27.77 Aligned_cols=130 Identities=12% Similarity=0.180 Sum_probs=64.7
Q ss_pred EEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEe
Q 014133 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGR-DLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (430)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~-~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (430)
+=+||||=.++++-+++ +++ .+... |+.. +.. ..++|- ...++.++..++++...+..+.
T Consensus 2 iL~iDiGNT~ik~gl~~---~~~--~~~~~----r~~t~~~~---~t~de~-------~~~l~~~~~~~~~~~~~i~~vi 62 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFD---GDR--IVSQI----RYATSSVD---STSDQM-------GVFLRQALRENSVDLGKIDGCG 62 (258)
T ss_pred EEEEEeCCCceEEEEEE---CCE--EEEEE----EEecCccc---cchHHH-------HHHHHHHHHhcCCCccCCCeEE
Confidence 34789999999999997 222 23222 2221 111 111221 1223334444444322344344
Q ss_pred ehHhhhcCChHHHHHHHHHHhCCceeeeChHHHH------------H---HHHhhhhccCCCCCCceEEEEeCCCceEEE
Q 014133 94 TAAVRAAENKDEFVECVREKVGFEVDVLTGEQEA------------K---FVYMGVLQFLPVFDRLVLSVDIGGGSTEFV 158 (430)
Q Consensus 94 TsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~eEA------------~---l~~~gv~~~~~~~~~~~lv~DIGGGStEl~ 158 (430)
-|.+.- +=...+.+.+++..|.++.+++.+... - ....|+.... +.++.+|+|.|..-|==.
T Consensus 63 isSVvP-~l~~~l~~~~~~~~~~~~~~v~~~~~~l~~~y~~p~~lG~DR~~~~vaA~~~~--~~~~~iViD~GTA~T~d~ 139 (258)
T PRK13324 63 ISSVVP-HLNYSLGSAVIKYFNIKPFFISMDTTDLDMSAVEAHQVGADRIASCISAIADH--PNKDLLIIDLGTATTFDL 139 (258)
T ss_pred EEeCcc-hhHHHHHHHHHHHhCCCeEEEecCCccceeecCChhhccHHHHHHHHHHHHhc--CCCCEEEEEcCCceEEEE
Confidence 444442 223344466667788777777433211 0 1112221111 235689999999988655
Q ss_pred eeeCCeEe
Q 014133 159 IGKRGKVV 166 (430)
Q Consensus 159 ~~~~~~~~ 166 (430)
+-.+|+..
T Consensus 140 v~~~g~~~ 147 (258)
T PRK13324 140 VTKDKKYL 147 (258)
T ss_pred EcCCCeEE
Confidence 54555554
No 149
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=56.17 E-value=1.8e+02 Score=28.65 Aligned_cols=140 Identities=15% Similarity=0.140 Sum_probs=75.0
Q ss_pred CCeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHcCCCCccE-
Q 014133 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSIS-TQSQARSVESLLMFRDIIQSHNISRDHT- 89 (430)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls-~e~i~r~~~~L~~f~~~~~~~~v~~~~i- 89 (430)
+..+=.||-|+.++|.+|++. +++ ++-..+. +-.+..... ++++..+.+++.++. .+-|.+++++
T Consensus 4 ~~~~lGVDGGGTkt~a~l~~~--~g~--vlg~g~s------GpAN~~~~~~e~A~~ni~~ai~~A~---~~aG~~~~~i~ 70 (301)
T COG2971 4 MPYFLGVDGGGTKTRAVLADE--DGN--VLGRGKS------GPANIQLVGKEEAVRNIKDAIREAL---DEAGLKPDEIA 70 (301)
T ss_pred ccEEEEEccCCcceEEEEEcC--CCc--EEEEecc------CCceecccchHHHHHHHHHHHHHHH---HhcCCCHHHhC
Confidence 367889999999999999973 443 3322211 111223344 677777777777655 3334444321
Q ss_pred -EEEeehHhhhcCChHHHHHHHHHHhCCcee-eeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeCCeEee
Q 014133 90 -RAVATAAVRAAENKDEFVECVREKVGFEVD-VLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVF 167 (430)
Q Consensus 90 -~~vATsA~R~A~N~~~fl~~i~~~tGl~i~-vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~ 167 (430)
.+++.+..= .|.+.-.... +-++++- .++=+-.++..+.|... +++++++=.|.||.-+.. ++++...
T Consensus 71 ~~~agla~ag--~~~~~~~~~~--~~~l~~a~~v~v~~Dg~iAl~ga~~-----~~~Gii~i~GTGSi~~~~-~gg~~~r 140 (301)
T COG2971 71 AIVAGLALAG--ANVEEAREEL--ERLLPFAGKVDVENDGLIALRGALG-----DDDGIIVIAGTGSIGYGR-KGGRRER 140 (301)
T ss_pred ceeeeeeccC--cchhHHHHHH--HHhcCccceEEEecChHHHHhhccC-----CCCCEEEEecCCeEEEEE-eCCeeEE
Confidence 223332221 1222222222 2233333 23333345555555331 355899999999999998 6665442
Q ss_pred --eeeeehh
Q 014133 168 --CESVNLG 174 (430)
Q Consensus 168 --~~Sl~lG 174 (430)
-|.+++|
T Consensus 141 ~GG~Gf~Ig 149 (301)
T COG2971 141 VGGWGFPIG 149 (301)
T ss_pred ecCcCcccc
Confidence 3555554
No 150
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=56.01 E-value=90 Score=30.92 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=24.4
Q ss_pred ccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHH
Q 014133 87 DHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ 125 (430)
Q Consensus 87 ~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~e 125 (430)
..|...|..| +-..|.+.+.+++|+++++++..+
T Consensus 284 ~~I~LtGgga-----~~~gl~~~l~~~l~~~v~~~~P~~ 317 (348)
T TIGR01175 284 DGLVLAGGGA-----TLSGLDAAIYQRLGLPTEVANPFA 317 (348)
T ss_pred ceEEEECccc-----cchhHHHHHHHHHCCCeEecChHH
Confidence 3465555443 345688888999999999998654
No 151
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=55.87 E-value=60 Score=33.05 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHH-----HHHHHHhhhhccCCCCCCce
Q 014133 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-----EAKFVYMGVLQFLPVFDRLV 145 (430)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~e-----EA~l~~~gv~~~~~~~~~~~ 145 (430)
++.+..+.++.+|.+ ++.+|....+++..-.+.+.+.++ +.|+.+.+.+|.+ |.-.......... +.-
T Consensus 18 ~~~~l~~~~~~~g~~--~~livt~~~~~~~g~~~~v~~~L~-~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~----~~D 90 (383)
T PRK09860 18 SLTDAMNMMADYGFT--RTLIVTDNMLTKLGMAGDVQKALE-ERNIFSVIYDGTQPNPTTENVAAGLKLLKEN----NCD 90 (383)
T ss_pred HHHHHHHHHHhcCCC--EEEEEcCcchhhCccHHHHHHHHH-HcCCeEEEeCCCCCCcCHHHHHHHHHHHHHc----CCC
Confidence 445555666778874 677777766766544556666665 4688888888732 2111111111111 223
Q ss_pred EEEEeCCCceE
Q 014133 146 LSVDIGGGSTE 156 (430)
Q Consensus 146 lv~DIGGGStE 156 (430)
.|+=|||||+=
T Consensus 91 ~IiaiGGGS~i 101 (383)
T PRK09860 91 SVISLGGGSPH 101 (383)
T ss_pred EEEEeCCchHH
Confidence 79999999973
No 152
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism]
Probab=55.44 E-value=14 Score=37.88 Aligned_cols=40 Identities=30% Similarity=0.329 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhc
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGH 413 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~ 413 (430)
.|+--|+.+|..|=-+|.--. . .....|++.||+.||||.
T Consensus 71 THSLEVAQIgRsia~~l~~~~------------~-~~~~dL~E~a~LaHDiGh 110 (412)
T COG0232 71 THSLEVAQIGRSIARELGLDL------------D-LPFEDLVETACLAHDIGH 110 (412)
T ss_pred hhhHHHHHHHHHHHHHhcccc------------C-CChHHHHHHHHHHhcCCC
Confidence 788888888888754443220 0 122489999999999996
No 153
>PLN02669 xylulokinase
Probab=53.83 E-value=53 Score=35.27 Aligned_cols=79 Identities=14% Similarity=0.079 Sum_probs=43.4
Q ss_pred CCeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCC-C----------CHHHH-HHHHHHHHHHHHHH
Q 014133 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCS-I----------STQSQ-ARSVESLLMFRDII 79 (430)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~-l----------s~e~i-~r~~~~L~~f~~~~ 79 (430)
.+.+-.||+||.++|-+|++ .+|+..-.......+.+-+.....|. . ++... +.+..++++..
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d--~~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~--- 81 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLD--SNLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLA--- 81 (556)
T ss_pred CCeEEEEecccCCeEEEEEc--CCCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHH---
Confidence 45788899999999999997 35653322222222212221111111 1 11133 55555566543
Q ss_pred HHcCCCCccEEEEeehH
Q 014133 80 QSHNISRDHTRAVATAA 96 (430)
Q Consensus 80 ~~~~v~~~~i~~vATsA 96 (430)
+.+++.++|.+++.++
T Consensus 82 -~~~~~~~~I~aIs~s~ 97 (556)
T PLN02669 82 -KEKFPFHKVVAISGSG 97 (556)
T ss_pred -HcCCChhhEEEEEecC
Confidence 2356556799999884
No 154
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=53.41 E-value=29 Score=35.38 Aligned_cols=80 Identities=16% Similarity=0.192 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHH-H-HHH-HHhhhhccCCCCCCceEE
Q 014133 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-E-AKF-VYMGVLQFLPVFDRLVLS 147 (430)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~e-E-A~l-~~~gv~~~~~~~~~~~lv 147 (430)
++++..+.++.+| + ++.+|....+.+..-.+.+.+.++ +.|+++.+.++.+ + -.. ...++..... .+.-.|
T Consensus 10 ~l~~l~~~~~~~g-~--~~livt~~~~~~~~~~~~v~~~L~-~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~--~~~D~I 83 (386)
T cd08191 10 QRRQLPRLAARLG-S--RALIVTDERMAGTPVFAELVQALA-AAGVEVEVFDGVLPDLPRSELCDAASAAAR--AGPDVI 83 (386)
T ss_pred HHHHHHHHHHHcC-C--eEEEEECcchhhcchHHHHHHHHH-HcCCeEEEECCCCCCcCHHHHHHHHHHHHh--cCCCEE
Confidence 3445555666677 3 577777766666444455555543 4588998888765 1 111 1122221111 122389
Q ss_pred EEeCCCceE
Q 014133 148 VDIGGGSTE 156 (430)
Q Consensus 148 ~DIGGGStE 156 (430)
+=|||||+=
T Consensus 84 IaiGGGS~i 92 (386)
T cd08191 84 IGLGGGSCI 92 (386)
T ss_pred EEeCCchHH
Confidence 999999974
No 155
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only]
Probab=52.84 E-value=16 Score=35.66 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHhhhhcccCCCCcc
Q 014133 397 KDLEYLEAACLLHNIGHFTSKKGYH 421 (430)
Q Consensus 397 ~~r~lL~~Aa~LhdiG~~I~~~~h~ 421 (430)
-.+.++.++++|||+|+-.-+..--
T Consensus 163 ~n~dli~Ag~ilHdigK~~el~~~~ 187 (287)
T COG3481 163 VNRELIYAGAILHDIGKVLELTGPE 187 (287)
T ss_pred ccHHHHHHHHHHhcccccccCCCcc
Confidence 4579999999999999987766543
No 156
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This entry represents the catalytic domain of PDE which is multihelical and can be divided into three subdomains.; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0007165 signal transduction; PDB: 3I8V_A 3TVX_A 2QYK_A 1ZKL_A 3G3N_A 4DFF_B 2OUS_B 3SNL_A 2OUY_A 2OUP_B ....
Probab=52.37 E-value=24 Score=33.35 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhc
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGH 413 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~ 413 (430)
.|+-.|...+-.+..... +.. .+++-|..-|-+||+.||+|.
T Consensus 5 ~Ha~dV~q~~~~ll~~~~----~~~-------~l~~~e~~alliAal~HDv~H 46 (237)
T PF00233_consen 5 RHAADVLQFVYYLLSNGG----LRE-------YLSPLEIFALLIAALCHDVDH 46 (237)
T ss_dssp HHHHHHHHHHHHHHHHGG----GGT-------TS-HHHHHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHHHHHHHccC----ccc-------cCCHHHHHHHHHHHHHhcCCC
Confidence 688888777766654322 111 367788999999999999995
No 157
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=52.34 E-value=56 Score=31.91 Aligned_cols=130 Identities=22% Similarity=0.291 Sum_probs=72.9
Q ss_pred eEEEEeCCCceEEEeeeCCeEeeeeeeehhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhchhhHHHHhcCCeEEEeec
Q 014133 145 VLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFGTCSGNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSS 224 (430)
Q Consensus 145 ~lv~DIGGGStEl~~~~~~~~~~~~Sl~lG~vrl~e~f~~~~~~~~~~~~l~~~i~~~l~~~~~~~~l~~~~~~~lig~g 224 (430)
.+++.=|+-||.+..|++.+.++..++.--.-.| ++|... +++..--++.+.+.+.+... .-.++..++|-|
T Consensus 5 iltINPGststKlaVfe~ek~ife~tlrhs~eEl-~~f~~i---~dQ~~fR~~~i~~~i~e~g~----~i~~~dAvvgRG 76 (358)
T COG3426 5 ILTINPGSTSTKLAVFEDEKEIFEKTLRHSLEEL-EKFKRI---PDQFEFRKDAILEFIDEQGY----NISKFDAVVGRG 76 (358)
T ss_pred EEEecCCCccceEEEecCchHhhHHHhhcCHHHH-HHHhhh---hHhHhHHHHHHHHHHHHhCC----CcCCccceeecC
Confidence 6888899999999999999887766554333111 123221 11121112233333332111 112456789988
Q ss_pred hhHHHHHHHHHcCCCcccccCCCCCCCCcccceeCHHHHHHHHHHHHcCCCChHHHhhcCCCCccchhhHHHHHHHHHHH
Q 014133 225 GTIRAIEKAVVSGYDRDFVDNVGDFGGCKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEI 304 (430)
Q Consensus 225 Gt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~~~~~e~~~~~gl~~~Rad~i~~g~~il~~l 304 (430)
|-.+-+ .. -.|.++.+=++.+... .+-+ ... - -|++|-.++
T Consensus 77 GLL~pi------------~g---------GTY~Vn~~M~~~lk~~---~~G~---haS----------n--LGaiiA~~i 117 (358)
T COG3426 77 GLLRPI------------PG---------GTYVVNEKMLKDLKNG---VQGE---HAS----------N--LGAIIANRI 117 (358)
T ss_pred cccccc------------CC---------ceeEeCHHHHHHHHcC---CCCc---chh----------h--hhHHHHHHH
Confidence 855422 11 1377886555544321 1111 111 1 377899999
Q ss_pred HHHhCCCeEEECCcchH
Q 014133 305 FELLGIEEMEVSGYGLG 321 (430)
Q Consensus 305 ~~~~~~~~i~vs~~glr 321 (430)
.+.+|++..+|-...+-
T Consensus 118 a~~~gvPayIVDPvvVD 134 (358)
T COG3426 118 AKALGVPAYIVDPVVVD 134 (358)
T ss_pred hhhcCCCeeeeCceehh
Confidence 99999999999776643
No 158
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=52.14 E-value=19 Score=36.43 Aligned_cols=81 Identities=11% Similarity=0.120 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChH-HHHHHH--HhhhhccCCCCCCceEE
Q 014133 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGE-QEAKFV--YMGVLQFLPVFDRLVLS 147 (430)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~-eEA~l~--~~gv~~~~~~~~~~~lv 147 (430)
++++..+.++.++.. ++.+|....+++..-.+.+.+.++ +.|+++.+.++- .+..+. ..++...-. .+.-+|
T Consensus 11 ~~~~l~~~l~~~g~~--~~liv~~~~~~~~~~~~~v~~~L~-~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~d~I 85 (370)
T cd08192 11 AIKELPAECAELGIK--RPLIVTDPGLAALGLVARVLALLE-DAGLAAALFDEVPPNPTEAAVEAGLAAYRA--GGCDGV 85 (370)
T ss_pred HHHHHHHHHHHcCCC--eEEEEcCcchhhCccHHHHHHHHH-HcCCeEEEeCCCCCCCCHHHHHHHHHHHHh--cCCCEE
Confidence 344555566667763 567676666665444566666654 458888887643 222222 111111111 122389
Q ss_pred EEeCCCceE
Q 014133 148 VDIGGGSTE 156 (430)
Q Consensus 148 ~DIGGGStE 156 (430)
+-|||||+=
T Consensus 86 IaiGGGSvi 94 (370)
T cd08192 86 IAFGGGSAL 94 (370)
T ss_pred EEeCCchHH
Confidence 999999974
No 159
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=51.12 E-value=9.7 Score=23.79 Aligned_cols=26 Identities=12% Similarity=0.041 Sum_probs=19.5
Q ss_pred HHHHcCCCChHHHhhcCCCCccchhhHH
Q 014133 268 ERLCCGGDGEVERVRRERFFKRRSEFIV 295 (430)
Q Consensus 268 ~~l~~~~~~~~e~~~~~gl~~~Rad~i~ 295 (430)
+.+...+.+ |++++||+.+..|+.|+
T Consensus 3 ~g~~pas~e--eL~~lpGIG~~tA~~I~ 28 (30)
T PF00633_consen 3 DGLIPASIE--ELMKLPGIGPKTANAIL 28 (30)
T ss_dssp HHHHTSSHH--HHHTSTT-SHHHHHHHH
T ss_pred CCcCCCCHH--HHHhCCCcCHHHHHHHH
Confidence 345566777 89999999999998775
No 160
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=50.41 E-value=56 Score=33.15 Aligned_cols=79 Identities=11% Similarity=0.178 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHH-HHHHH----HhhhhccCCCCCCce
Q 014133 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFV----YMGVLQFLPVFDRLV 145 (430)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~e-EA~l~----~~gv~~~~~~~~~~~ 145 (430)
++++..+.++.+|.+ ++.+|....+++..-.+.+.+.++ +.|+++.+.++.+ +..+. ........ +.-
T Consensus 16 ~l~~l~~~l~~~g~~--r~lvvt~~~~~~~g~~~~v~~~L~-~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~----~~D 88 (379)
T TIGR02638 16 AIEDIVDEVKRRGFK--KALVVTDKDLIKFGVADKVTDLLD-EAGIAYELFDEVKPNPTITVVKAGVAAFKAS----GAD 88 (379)
T ss_pred HHHHHHHHHHhcCCC--EEEEEcCcchhhccchHHHHHHHH-HCCCeEEEECCCCCCcCHHHHHHHHHHHHhc----CCC
Confidence 344445556667774 677777776776555566766664 5689999887543 21111 11111111 123
Q ss_pred EEEEeCCCceE
Q 014133 146 LSVDIGGGSTE 156 (430)
Q Consensus 146 lv~DIGGGStE 156 (430)
.|+=|||||+=
T Consensus 89 ~IiaiGGGSvi 99 (379)
T TIGR02638 89 YLIAIGGGSPI 99 (379)
T ss_pred EEEEeCChHHH
Confidence 89999999974
No 161
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=50.09 E-value=1.1e+02 Score=29.84 Aligned_cols=57 Identities=18% Similarity=0.059 Sum_probs=38.0
Q ss_pred EEEEEecccceeeeEEEEeCCCcEEEEEeecc-eeeccCCCCCCCCCCHHHHHHHHHHHHH
Q 014133 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQ-PVILGRDLSSSCSISTQSQARSVESLLM 74 (430)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~-~vrLg~~~~~~g~ls~e~i~r~~~~L~~ 74 (430)
..++|||+.|+.+..++ ++.+..-.+..- .+||-+....++..+++.++.+.+.+++
T Consensus 127 ~~v~DiGGGSte~~~~~---~~~~~~~~Sl~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~~ 184 (300)
T TIGR03706 127 GLVVDIGGGSTELILGK---DFEPGEGVSLPLGCVRLTEQFFPDGPISKKSLKQARKAARE 184 (300)
T ss_pred cEEEEecCCeEEEEEec---CCCEeEEEEEccceEEhHHhhCCCCCCCHHHHHHHHHHHHH
Confidence 38999999999999874 334332222222 3677777777777887777666665544
No 162
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=48.57 E-value=60 Score=32.98 Aligned_cols=80 Identities=15% Similarity=0.256 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHH-HHHHH--HhhhhccCCCCCCceEEE
Q 014133 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFV--YMGVLQFLPVFDRLVLSV 148 (430)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~e-EA~l~--~~gv~~~~~~~~~~~lv~ 148 (430)
+.+..+.++.+|.. ++.+|....+++..=.+.+.+.++ +.|+++.+.++-+ |..+. -.++..... .+.-+|+
T Consensus 18 l~~l~~~~~~~g~~--~~lvvtd~~~~~~g~~~~v~~~L~-~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~II 92 (382)
T PRK10624 18 IGALTDEVKRRGFK--KALIVTDKTLVKCGVVAKVTDVLD-AAGLAYEIYDGVKPNPTIEVVKEGVEVFKA--SGADYLI 92 (382)
T ss_pred HHHHHHHHHhcCCC--EEEEEeCcchhhCcchHHHHHHHH-HCCCeEEEeCCCCCCcCHHHHHHHHHHHHh--cCCCEEE
Confidence 44455556667774 677777777766544555665554 4688998887543 21111 111111111 1123899
Q ss_pred EeCCCceE
Q 014133 149 DIGGGSTE 156 (430)
Q Consensus 149 DIGGGStE 156 (430)
=|||||+=
T Consensus 93 aiGGGS~i 100 (382)
T PRK10624 93 AIGGGSPQ 100 (382)
T ss_pred EeCChHHH
Confidence 99999973
No 163
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=48.55 E-value=2.6e+02 Score=27.07 Aligned_cols=128 Identities=22% Similarity=0.266 Sum_probs=80.8
Q ss_pred eEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEe
Q 014133 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (430)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (430)
.+..||||.-..++... +|....++..--| +.+ .-+|+-++|+++... +.+ +.+-+|-
T Consensus 4 kilGiDIGGAntk~a~~----DG~~~~~d~~YlP------MWk-------~k~rL~~~Lkei~~k---~~~--~~vgvvM 61 (330)
T COG1548 4 KILGIDIGGANTKIASS----DGDNYKIDHIYLP------MWK-------KKDRLEETLKEIVHK---DNV--DYVGVVM 61 (330)
T ss_pred eEEEeeccCccchhhhc----cCCeeeeeEEEec------ccc-------chhHHHHHHHHHhcc---CCc--ceeEEEe
Confidence 56789999988888773 4544333332111 111 124555677766533 555 4577888
Q ss_pred ehHhhhcCC-----hHHHHHHHHHHhCCceeeeChH-----HHHHHHHh--hhhccC-------CCCCCceEEEEeCCCc
Q 014133 94 TAAVRAAEN-----KDEFVECVREKVGFEVDVLTGE-----QEAKFVYM--GVLQFL-------PVFDRLVLSVDIGGGS 154 (430)
Q Consensus 94 TsA~R~A~N-----~~~fl~~i~~~tGl~i~vIsg~-----eEA~l~~~--gv~~~~-------~~~~~~~lv~DIGGGS 154 (430)
|+-+-+|=| -.++++.++...+-++.+++-+ -||.=.+. ++.++. ....++.+++|+|+-.
T Consensus 62 TaELaD~f~tk~eGVe~Ii~~v~~Af~~pv~~v~~~G~~~ssEa~~~~~~vAAaNW~Ata~~~~e~~~dsci~VD~GSTT 141 (330)
T COG1548 62 TAELADAFKTKAEGVEDIIDTVEKAFNCPVYVVDVNGNFLSSEALKNPREVAAANWVATARFLAEEIKDSCILVDMGSTT 141 (330)
T ss_pred eHHHHHHhhhHHhHHHHHHHHHHHhcCCceEEEeccCcCcChhHhcCHHHHHHhhhHHHHHHHHHhcCCceEEEecCCcc
Confidence 999988744 3578899999999998876532 14433222 222221 1223569999999999
Q ss_pred eEEEeeeCC
Q 014133 155 TEFVIGKRG 163 (430)
Q Consensus 155 tEl~~~~~~ 163 (430)
|.++-..+|
T Consensus 142 tDIIPi~~g 150 (330)
T COG1548 142 TDIIPIKDG 150 (330)
T ss_pred cceEeecch
Confidence 999987765
No 164
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=48.01 E-value=28 Score=36.20 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=15.8
Q ss_pred EEEecccceeeeEEEEe
Q 014133 17 SIDMGTSSFKLLIIRAY 33 (430)
Q Consensus 17 vIDIGSNsirL~I~e~~ 33 (430)
+||+||.++|..+++.+
T Consensus 2 aiD~Gtt~~k~~l~~~~ 18 (454)
T TIGR02627 2 AVDLGASSGRVMLASYE 18 (454)
T ss_pred cEeccCCchheEEEEEc
Confidence 79999999999999876
No 165
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=47.58 E-value=27 Score=35.75 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHH-HHHH--HHhhhhccCCCCCCceEE
Q 014133 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKF--VYMGVLQFLPVFDRLVLS 147 (430)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~e-EA~l--~~~gv~~~~~~~~~~~lv 147 (430)
++++.-+.++.+|.. ++.+|+...++++.=-+.+.+.++ +.|+++.+.++-+ |-.+ ...++...-. .+.-+|
T Consensus 36 ~~~~l~~~~~~~g~~--~~lvv~~~~~~~~g~~~~v~~~L~-~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~--~~~D~I 110 (395)
T PRK15454 36 AVSSCGQQAQTRGLK--HLFVMADSFLHQAGMTAGLTRSLA-VKGIAMTLWPCPVGEPCITDVCAAVAQLRE--SGCDGV 110 (395)
T ss_pred HHHHHHHHHHhcCCC--EEEEEcCcchhhCccHHHHHHHHH-HcCCeEEEECCCCCCcCHHHHHHHHHHHHh--cCcCEE
Confidence 344455556667763 577777666766443466666664 4688888776443 2111 1122221111 122389
Q ss_pred EEeCCCceE
Q 014133 148 VDIGGGSTE 156 (430)
Q Consensus 148 ~DIGGGStE 156 (430)
+=|||||+=
T Consensus 111 iavGGGS~i 119 (395)
T PRK15454 111 IAFGGGSVL 119 (395)
T ss_pred EEeCChHHH
Confidence 999999963
No 166
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=47.04 E-value=54 Score=27.58 Aligned_cols=62 Identities=11% Similarity=0.220 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHHHHHHH
Q 014133 60 ISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFV 130 (430)
Q Consensus 60 ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~ 130 (430)
.+.+.+..++ .+.++++++++..+.++||-.++. .+.-+-++-++.|++++..+.+|=....
T Consensus 12 ~~~~~i~~ai------~~~l~~~~~~~~~i~~iasi~~K~---~E~~l~~~A~~l~~~~~~~~~eeL~~~~ 73 (121)
T PF01890_consen 12 APAEEIEEAI------EQALAEAGLSPRSIAAIASIDIKA---DEPGLLELAEELGIPLRFFSAEELNAVE 73 (121)
T ss_dssp --HHHHHHHH------HHHHHHCT--GGGEEEEEESSSSS-----HHHHHHHHHCTSEEEEE-HHHHHCHH
T ss_pred CCHHHHHHHH------HHHHHHcCCChhhccEEEeccccC---CCHHHHHHHHHhCCCeEEECHHHHhcCC
Confidence 4555555443 355667899888899999987654 3456666777899999999999987655
No 167
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=46.05 E-value=85 Score=31.60 Aligned_cols=79 Identities=14% Similarity=0.222 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHH-HHHH----HHhhhhccCCCCCCce
Q 014133 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKF----VYMGVLQFLPVFDRLV 145 (430)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~e-EA~l----~~~gv~~~~~~~~~~~ 145 (430)
++++..+.+++++.+ ++.+|....+.+..-.+.+.+.++ +.|+++.+.++-+ +..+ ......... +.-
T Consensus 10 ~l~~l~~~l~~~~~~--~~lvv~~~~~~~~~~~~~v~~~L~-~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~----~~d 82 (370)
T cd08551 10 AIEKLGEEIKNLGGR--KALIVTDPGLVKTGVLDKVIDSLK-EAGIEVVIFDGVEPNPTLSNVDAAVAAYREE----GCD 82 (370)
T ss_pred HHHHHHHHHHHcCCC--eEEEEeCcchhhCccHHHHHHHHH-HcCCeEEEECCCCCCCCHHHHHHHHHHHHhc----CCC
Confidence 344555556667763 577776666655334456666665 4578888876522 2222 111111111 123
Q ss_pred EEEEeCCCceE
Q 014133 146 LSVDIGGGSTE 156 (430)
Q Consensus 146 lv~DIGGGStE 156 (430)
.|+-|||||+=
T Consensus 83 ~IiaiGGGs~~ 93 (370)
T cd08551 83 GVIAVGGGSVL 93 (370)
T ss_pred EEEEeCCchHH
Confidence 79999999974
No 168
>PRK10854 exopolyphosphatase; Provisional
Probab=45.06 E-value=1.1e+02 Score=32.67 Aligned_cols=59 Identities=19% Similarity=0.103 Sum_probs=40.0
Q ss_pred CeEEEEEecccceeeeEEEEeCCCcEEEEEeecc-eeeccCCCCCCCCCCHHHHHHHHHHHHH
Q 014133 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQ-PVILGRDLSSSCSISTQSQARSVESLLM 74 (430)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~-~vrLg~~~~~~g~ls~e~i~r~~~~L~~ 74 (430)
...-+||||+.|+-+.+++ ++.+....+..- .|||-+..+..+..+++.++++...+.+
T Consensus 137 ~~~lvvDIGGGStEl~~~~---~~~~~~~~S~~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~~ 196 (513)
T PRK10854 137 GRKLVIDIGGGSTELVIGE---NFEPILVESRRMGCVSFAQLYFPGGVISKENFQRARLAAAQ 196 (513)
T ss_pred CCeEEEEeCCCeEEEEEec---CCCeeEeEEEecceeeHHhhhCCCCCCCHHHHHHHHHHHHH
Confidence 3468999999999999985 344444444422 3677777777777887776665555433
No 169
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=44.72 E-value=30 Score=35.02 Aligned_cols=81 Identities=19% Similarity=0.246 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHH-HHHHH--HhhhhccCCCCCCceEE
Q 014133 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFV--YMGVLQFLPVFDRLVLS 147 (430)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~e-EA~l~--~~gv~~~~~~~~~~~lv 147 (430)
++++..+.++.+|.. ++.+|....+++..-.+.+.+.++ +.|+++.+.++-+ +..+. -.++..... .+.-.|
T Consensus 13 ~l~~l~~~l~~~g~~--~~lvvt~~~~~~~g~~~~v~~~L~-~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~d~I 87 (374)
T cd08189 13 SLAQLPAAISQLGVK--KVLIVTDKGLVKLGLLDKVLEALE-GAGIEYAVYDGVPPDPTIENVEAGLALYRE--NGCDAI 87 (374)
T ss_pred HHHHHHHHHHhcCCC--eEEEEeCcchhhcccHHHHHHHHH-hcCCeEEEeCCCCCCcCHHHHHHHHHHHHh--cCCCEE
Confidence 345555566777773 677787776765332355555554 4588888887532 22111 111111111 112389
Q ss_pred EEeCCCceE
Q 014133 148 VDIGGGSTE 156 (430)
Q Consensus 148 ~DIGGGStE 156 (430)
+=|||||+=
T Consensus 88 IaiGGGS~~ 96 (374)
T cd08189 88 LAVGGGSVI 96 (374)
T ss_pred EEeCCccHH
Confidence 999999974
No 170
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=44.35 E-value=32 Score=34.93 Aligned_cols=79 Identities=14% Similarity=0.263 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHH-HHHHHH--hhhhccCCCCCCceEEE
Q 014133 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFVY--MGVLQFLPVFDRLVLSV 148 (430)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~e-EA~l~~--~gv~~~~~~~~~~~lv~ 148 (430)
+++..+.++.++.. ++.+|....+++..=.+.+.+.++ +.|+++.+.++-+ |..+.- .++..... .+.-+|+
T Consensus 16 l~~l~~~l~~~g~~--~~lvv~~~~~~~~~~~~~v~~~L~-~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~--~~~D~II 90 (377)
T cd08176 16 IKEIGDELKNLGFK--KALIVTDKGLVKIGVVEKVTDVLD-EAGIDYVIYDGVKPNPTITNVKDGLAVFKK--EGCDFII 90 (377)
T ss_pred HHHHHHHHHHhCCC--eEEEECCchHhhcCcHHHHHHHHH-HcCCeEEEeCCCCCCCCHHHHHHHHHHHHh--cCCCEEE
Confidence 34444556666763 567776666655333455555554 4589999988732 222211 11111111 1223899
Q ss_pred EeCCCce
Q 014133 149 DIGGGST 155 (430)
Q Consensus 149 DIGGGSt 155 (430)
=|||||+
T Consensus 91 avGGGS~ 97 (377)
T cd08176 91 SIGGGSP 97 (377)
T ss_pred EeCCcHH
Confidence 9999998
No 171
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=44.13 E-value=25 Score=34.82 Aligned_cols=76 Identities=14% Similarity=0.236 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHHH-HHHH----HhhhhccCCCCCCceE
Q 014133 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQE-AKFV----YMGVLQFLPVFDRLVL 146 (430)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~eE-A~l~----~~gv~~~~~~~~~~~l 146 (430)
+++..+.++.++.+ ++.+|....+++ .=.+.+.+.+++. +++.+.++.+. ..+. ....... .+.-.
T Consensus 11 l~~l~~~~~~~g~~--~~liv~~~~~~~-~~~~~v~~~l~~~--~~~~~~~~~~~~p~~~~v~~~~~~~~~----~~~d~ 81 (332)
T cd07766 11 IEKIGEEIKRGGFD--RALVVSDEGVVK-GVGEKVADSLKKL--IAVHIFDGVGPNPTFEEVKEAVERARA----AEVDA 81 (332)
T ss_pred HHHHHHHHHhcCCC--eEEEEeCCchhh-hHHHHHHHHHHhc--CcEEEeCCcCCCcCHHHHHHHHHHHHh----cCcCE
Confidence 34444555666763 677787777766 4444555555543 67777764331 2211 1111111 12348
Q ss_pred EEEeCCCceE
Q 014133 147 SVDIGGGSTE 156 (430)
Q Consensus 147 v~DIGGGStE 156 (430)
|+=|||||+=
T Consensus 82 IIaiGGGs~~ 91 (332)
T cd07766 82 VIAVGGGSTL 91 (332)
T ss_pred EEEeCCchHH
Confidence 9999999974
No 172
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=43.84 E-value=18 Score=37.78 Aligned_cols=161 Identities=17% Similarity=0.235 Sum_probs=84.7
Q ss_pred CCCeEE-EEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCC-----------CCCCHHHHHHHHHHHHHHHHH
Q 014133 11 PQTLFA-SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSS-----------CSISTQSQARSVESLLMFRDI 78 (430)
Q Consensus 11 ~~~~~A-vIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~-----------g~ls~e~i~r~~~~L~~f~~~ 78 (430)
.+..|+ ++|+||.++|+.++++..+.-.......+-+++.|+.+..- ..++-+..+. .++.|-..
T Consensus 161 ~~~~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~~i~~~~D~a~~l~~~vVe~---i~~~id~~ 237 (614)
T COG3894 161 KNEAYGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDFAIMMGPDGAEGLQIAVVEA---INQLIDKL 237 (614)
T ss_pred cceeeeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHHHHHhCcchhhhhHHHHHHH---HHHHHhhh
Confidence 345665 79999999999999997433356777788888988876421 1233333332 24456677
Q ss_pred HHHcCCCCcc---EEEEeehHhhhc---CChH-----HHHHHHHHHh-------CCce----eeeChHHHHH---HHHhh
Q 014133 79 IQSHNISRDH---TRAVATAAVRAA---ENKD-----EFVECVREKV-------GFEV----DVLTGEQEAK---FVYMG 133 (430)
Q Consensus 79 ~~~~~v~~~~---i~~vATsA~R~A---~N~~-----~fl~~i~~~t-------Gl~i----~vIsg~eEA~---l~~~g 133 (430)
|.+++|.... ..+++.+-+--| +|.. +|..+..+-. |+++ ++..-.-=|. =..+|
T Consensus 238 ~~e~~V~~n~I~~svfqgn~Im~h~faG~~~~~l~~~p~~~~~~r~v~~~a~~iGl~~n~n~el~vlP~Ia~~VGADAla 317 (614)
T COG3894 238 CEEGEVCGNPIQLSVFQGNPIMDHAFAGIDPTELGGSPFVKRVSRVVPASASEIGLEVNRNCELFVLPAIAHEVGADALA 317 (614)
T ss_pred chhccccccchhheeccCchHHHHHhcCCCHHHhcCCccccccccceecchhhcchhhcCCCEEEecchhccccchHHHH
Confidence 7877755322 233333322222 1211 1222221110 1111 0110000000 01111
Q ss_pred hhc--cCCCCCCceEEEEeCCCceEEEeeeCCeEeeeeeeehhHH
Q 014133 134 VLQ--FLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHV 176 (430)
Q Consensus 134 v~~--~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~Sl~lG~v 176 (430)
... .+-..++-.+++|+|. +.|+++..++++. ..|-|-|+.
T Consensus 318 ~il~tg~~~sdevslvtD~GT-NaEivlg~~~ri~-t~SaaaGPA 360 (614)
T COG3894 318 MILSTGIHDSDEVSLVTDYGT-NAEIVLGNRDRIV-TASAAAGPA 360 (614)
T ss_pred HHHhccCccccceEEEEeecc-cceEEeccCCEEE-EecCCCCcc
Confidence 111 1112345689999986 6899999888765 568888875
No 173
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=43.48 E-value=27 Score=31.47 Aligned_cols=43 Identities=26% Similarity=0.284 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhcccCCCCc
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGY 420 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~~I~~~~h 420 (430)
.|+..++.+|..|-..+.. .+....-.|++|||||..+-....
T Consensus 97 ~~s~~~a~~a~~la~~~~~-----------------~~~~~a~~~gLL~~iG~l~l~~~~ 139 (196)
T PF08668_consen 97 RHSLAAAAIARRLARELGF-----------------DDPDEAYLAGLLHDIGKLLLLSLF 139 (196)
T ss_dssp HHHHHHHHHHHHHHHHCTC-----------------CHHHHHHHHHHHTTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCC-----------------CCHHHHHHHHHHHHHhHHHHHHHh
Confidence 6788888888876544321 223668899999999998755433
No 174
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=43.22 E-value=26 Score=34.85 Aligned_cols=139 Identities=18% Similarity=0.210 Sum_probs=77.7
Q ss_pred EEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEeehH
Q 014133 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAA 96 (430)
Q Consensus 17 vIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATsA 96 (430)
.+|||--.++... ++++|....+.. .+..|=++. +++-++|+++.+ +++.. +.+-++=|.-
T Consensus 2 G~DiGGA~~K~a~--~~~~g~~~~v~~--~~~plW~~~-----------~~L~~~l~~~~~---~~~~~-~~~avtMTgE 62 (318)
T TIGR03123 2 GIDIGGANTKAAE--LDEDGRIKEVHQ--LYCPLWKGN-----------DKLAETLKEISQ---DLSSA-DNVAVTMTGE 62 (318)
T ss_pred ccccccceeeeEE--ecCCCceeEEEE--ecCcccCCc-----------hHHHHHHHHHHH---hcCcc-ceEEEEeehh
Confidence 3789877666654 455565544432 444555543 222334444433 33332 3455566777
Q ss_pred hhhc-CC----hHHHHHHHHHHhCCceeee-------ChHHHHHH-------HHhhhhccCCCCCCceEEEEeCCCceEE
Q 014133 97 VRAA-EN----KDEFVECVREKVGFEVDVL-------TGEQEAKF-------VYMGVLQFLPVFDRLVLSVDIGGGSTEF 157 (430)
Q Consensus 97 ~R~A-~N----~~~fl~~i~~~tGl~i~vI-------sg~eEA~l-------~~~gv~~~~~~~~~~~lv~DIGGGStEl 157 (430)
+-++ .+ -..+++.+.+..+-++.+. |-++-++. .+.+....+....++.+++||||=||.+
T Consensus 63 LaD~f~~r~~GV~~i~~~~~~~~~~~~~i~~s~GG~~s~~~a~~~pv~~~~Sg~~a~A~~la~~~~~~I~~DmGGTTtDi 142 (318)
T TIGR03123 63 LADCFEDKAEGVEFILAAVESAFGSPVSVFASDGGFVSAEEALTNPLDVAAANWLATAQLIAKRIPECLFVDMGSTTTDI 142 (318)
T ss_pred hhhhhcCHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHhHHHHHHhhHHHHHHHHHhcCCCEEEEEcCccceee
Confidence 7655 22 2345667777776666653 33333322 1221111111113569999999999999
Q ss_pred EeeeCCeEeeeeeeehh
Q 014133 158 VIGKRGKVVFCESVNLG 174 (430)
Q Consensus 158 ~~~~~~~~~~~~Sl~lG 174 (430)
+.+.+|++.......++
T Consensus 143 ~~i~~G~p~~~~~~d~~ 159 (318)
T TIGR03123 143 IPIIDGEVAAKGKTDLE 159 (318)
T ss_pred EEecCCEeeeeechhhh
Confidence 99999998876555555
No 175
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=42.36 E-value=63 Score=33.75 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=16.7
Q ss_pred ceEEEEeCCCceEEEeeeCCe
Q 014133 144 LVLSVDIGGGSTEFVIGKRGK 164 (430)
Q Consensus 144 ~~lv~DIGGGStEl~~~~~~~ 164 (430)
+.+++||||.+|-+-..-+|.
T Consensus 250 ~ll~VDIGGATTDvhSv~~g~ 270 (463)
T TIGR01319 250 DFILIDIGGATTDVHSAAAGE 270 (463)
T ss_pred CEEEEEcCccccchhhccCCC
Confidence 589999999999877655553
No 176
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=41.63 E-value=77 Score=26.85 Aligned_cols=61 Identities=13% Similarity=0.230 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHHHHHH
Q 014133 60 ISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKF 129 (430)
Q Consensus 60 ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~eEA~l 129 (430)
.+.+.|..++. +.+++++..+..+.++||-.++.. - .-+-.+-++.|++++..|.+|=...
T Consensus 14 ~~~e~i~~ai~------~~L~~~~l~~~si~~lasi~~K~~--E-~~L~~~A~~lg~pl~~~~~~eL~~~ 74 (126)
T PRK07027 14 VPAEQIEAAIR------AALAQRPLASADVRVVATLDLKAD--E-AGLLALCARHGWPLRAFSAAQLAAS 74 (126)
T ss_pred CCHHHHHHHHH------HHHHHcCCCHHHhheeEehhhhcC--C-HHHHHHHHHhCCCeEEeCHHHHHhc
Confidence 46666654443 666778898888999999888753 2 3444455678999999998886653
No 177
>PRK03011 butyrate kinase; Provisional
Probab=39.74 E-value=3.9e+02 Score=27.03 Aligned_cols=144 Identities=18% Similarity=0.226 Sum_probs=73.3
Q ss_pred eEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEe
Q 014133 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (430)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (430)
.+=+|.-||.|.++-+|+- .+...-.+.+... +.+.+-..+.++ .+--.+.+.+ .+++.+++..++.+|+
T Consensus 3 ~il~inpgststk~a~~~~---~~~~~~~~~~h~~---~~~~~~~~~~~q-~~~r~~~i~~---~l~~~g~~~~~l~av~ 72 (358)
T PRK03011 3 RILVINPGSTSTKIAVFED---EKPIFEETLRHSA---EELEKFKTIIDQ-YEFRKQAILD---FLKEHGIDLSELDAVV 72 (358)
T ss_pred EEEEEcCCCchheEEEEcC---CceeeeeccccCH---HHHhcCCCccch-HHHHHHHHHH---HHHHcCCChhcceEEE
Confidence 5679999999999999962 2211111111110 111111122221 2222233333 2334566545566664
Q ss_pred eh-----H-----h----------------hhcCChHHH-HHHHHHHhCCceeeeCh------HHHHHHH----------
Q 014133 94 TA-----A-----V----------------RAAENKDEF-VECVREKVGFEVDVLTG------EQEAKFV---------- 130 (430)
Q Consensus 94 Ts-----A-----~----------------R~A~N~~~f-l~~i~~~tGl~i~vIsg------~eEA~l~---------- 130 (430)
-- . . .-+.|-..+ ..++.++.|+++-|-+. .++||+.
T Consensus 73 ~RgG~~~~v~gG~~~v~~~~~~~l~~~~~~~~~~nl~~~~a~~~~~~~~~p~~v~D~~~~~~~~~~a~~~~lp~i~R~~g 152 (358)
T PRK03011 73 GRGGLLKPIPGGTYRVNEAMLEDLKNGKYGEHASNLGAIIAYEIAKELGIPAFIVDPVVVDEMEPVARISGLPEIERKSI 152 (358)
T ss_pred EcCCCCcccCCCCEEcCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCCEEEECCcccccCCHHHHHcCCCCcceeec
Confidence 33 1 1 234454333 33444556888877776 4555432
Q ss_pred -----Hhhhhcc------CCCCCCceEEEEeCCCceEEEeeeCCeEeee
Q 014133 131 -----YMGVLQF------LPVFDRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (430)
Q Consensus 131 -----~~gv~~~------~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~ 168 (430)
+..|... .+..+.+.+++-+|+|. -+....+|+++..
T Consensus 153 fHgln~~~va~~~a~~~g~~~~~~n~I~~hLGtGi-g~gai~~Gk~idg 200 (358)
T PRK03011 153 FHALNQKAVARRVAKELGKKYEELNLIVAHLGGGI-SVGAHRKGRVIDV 200 (358)
T ss_pred chHHhHHHHHHHHHHHhCCCcccCcEEEEEeCCCc-eeeEEECCEEEec
Confidence 2222211 12334579999999998 5667778887654
No 178
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=39.38 E-value=1.2e+02 Score=30.83 Aligned_cols=81 Identities=16% Similarity=0.172 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHH---HHHHHHhhhhccCCCCCCceEE
Q 014133 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ---EAKFVYMGVLQFLPVFDRLVLS 147 (430)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~e---EA~l~~~gv~~~~~~~~~~~lv 147 (430)
+++...+.+..+|+. ++.+|.+..+.+..=.+.+++.++.+ |+++.|-+.-+ .-.-...|+...-.. +.=.|
T Consensus 16 ~l~~l~~~~~~~g~~--r~liVTd~~~~~~g~~~~v~~~L~~~-~i~~~if~~v~p~P~~~~v~~~~~~~~~~--~~D~i 90 (377)
T COG1454 16 SLKELGEEVKRLGAK--RALIVTDRGLAKLGLLDKVLDSLDAA-GIEYEVFDEVEPEPTIETVEAGAEVAREF--GPDTI 90 (377)
T ss_pred hHHHHHHHHHhcCCC--ceEEEECCccccchhHHHHHHHHHhc-CCeEEEecCCCCCCCHHHHHHHHHHHHhc--CCCEE
Confidence 456667777888884 78999999999888888888888654 67777766421 111111222211111 12389
Q ss_pred EEeCCCceE
Q 014133 148 VDIGGGSTE 156 (430)
Q Consensus 148 ~DIGGGStE 156 (430)
+=+||||+=
T Consensus 91 IalGGGS~~ 99 (377)
T COG1454 91 IALGGGSVI 99 (377)
T ss_pred EEeCCccHH
Confidence 999999974
No 179
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=39.07 E-value=39 Score=34.23 Aligned_cols=81 Identities=15% Similarity=0.132 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeCh-HHHHHHH--HhhhhccCCCCCCceEE
Q 014133 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTG-EQEAKFV--YMGVLQFLPVFDRLVLS 147 (430)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg-~eEA~l~--~~gv~~~~~~~~~~~lv 147 (430)
++++..+.+++++.+ ++.+|....+++..-.+.+.+.++ +.|+++.+.++ +.|..+. ..++...-. .+.-.|
T Consensus 10 ~~~~l~~~~~~~~~~--r~livt~~~~~~~g~~~~v~~~L~-~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~I 84 (375)
T cd08194 10 AVDETGAVLADLGGK--RPLIVTDKVMVKLGLVDKLTDSLK-KEGIESAIFDDVVSEPTDESVEEGVKLAKE--GGCDVI 84 (375)
T ss_pred HHHHHHHHHHHcCCC--eEEEEcCcchhhcchHHHHHHHHH-HCCCeEEEECCCCCCcCHHHHHHHHHHHHh--cCCCEE
Confidence 455555666666763 677777666664323345444443 45888888765 2232221 112111111 112389
Q ss_pred EEeCCCceE
Q 014133 148 VDIGGGSTE 156 (430)
Q Consensus 148 ~DIGGGStE 156 (430)
+=|||||+=
T Consensus 85 IaiGGGS~~ 93 (375)
T cd08194 85 IALGGGSPI 93 (375)
T ss_pred EEeCCchHH
Confidence 999999974
No 180
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=36.71 E-value=44 Score=29.70 Aligned_cols=21 Identities=24% Similarity=0.563 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhhhhcccCCCC
Q 014133 399 LEYLEAACLLHNIGHFTSKKG 419 (430)
Q Consensus 399 r~lL~~Aa~LhdiG~~I~~~~ 419 (430)
+.+|..+|++||.|+-+...+
T Consensus 115 ~dWlHLtaLiHDLGKvl~f~G 135 (204)
T KOG1573|consen 115 EDWLHLTALIHDLGKVLAFGG 135 (204)
T ss_pred ccHHHHHHHHHHHHHHHHhcC
Confidence 468999999999999886544
No 181
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=36.69 E-value=1.2e+02 Score=32.06 Aligned_cols=58 Identities=10% Similarity=0.034 Sum_probs=37.4
Q ss_pred eEEEEEecccceeeeEEEEeCCCcEEEEEeecc-eeeccCCCCCCCCCCHHHHHHHHHHHHH
Q 014133 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQ-PVILGRDLSSSCSISTQSQARSVESLLM 74 (430)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~-~vrLg~~~~~~g~ls~e~i~r~~~~L~~ 74 (430)
..-+||||+-|+-+.+++ ++.+....+..- .|||-+..+..+..+++.+.++.+.+.+
T Consensus 133 ~~lviDIGGGStEl~~~~---~~~~~~~~Sl~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~~ 191 (496)
T PRK11031 133 QRLVVDIGGASTELVTGT---GAQATSLFSLSMGCVTWLERYFKDRNLTQENFDAAEKAARE 191 (496)
T ss_pred CEEEEEecCCeeeEEEec---CCceeeeeEEeccchHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 368999999999999985 334332222222 2566677677777887766665555443
No 182
>COG2254 Predicted HD superfamily hydrolase, possibly a nuclease [DNA replication, recombination, and repair]
Probab=36.16 E-value=27 Score=32.95 Aligned_cols=32 Identities=25% Similarity=0.173 Sum_probs=24.1
Q ss_pred cchHHHHHHHHHHhhhhc--------ccC--CCCcchhhhhh
Q 014133 396 DKDLEYLEAACLLHNIGH--------FTS--KKGYHKQSCHI 427 (430)
Q Consensus 396 ~~~r~lL~~Aa~LhdiG~--------~I~--~~~h~~Hs~yi 427 (430)
+..+++++.|-+|||||+ |.+ +..|---|+|+
T Consensus 48 e~v~~~vk~AiilHDiGKa~~~yQ~~~~~~~~~~HE~~Say~ 89 (230)
T COG2254 48 EKVEELVKLAIILHDIGKASEAYQKGRGNDCFYYHELVSAYF 89 (230)
T ss_pred HHHHHHHHHeeEEeechhhHHHHHHhcccCcccchhhHHHHH
Confidence 456799999999999998 455 55566666664
No 183
>PRK00292 glk glucokinase; Provisional
Probab=35.89 E-value=2e+02 Score=28.04 Aligned_cols=119 Identities=12% Similarity=0.121 Sum_probs=62.9
Q ss_pred CeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEE
Q 014133 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (430)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~v 92 (430)
+.+-+||||..++|+.+++.. ++. ++.+.+.++. . .+. ..+++.+|.+. ..+.+. .-.++
T Consensus 2 ~~~lgiDIGgT~i~~~l~~~~-~~~--~~~~~~~~~~---~--------~~~---~~~~l~~~l~~--~~~~~~-~gigI 61 (316)
T PRK00292 2 KPALVGDIGGTNARFALCDWA-NGE--IEQIKTYATA---D--------YPS---LEDAIRAYLAD--EHGVQV-RSACF 61 (316)
T ss_pred ceEEEEEcCccceEEEEEecC-CCc--eeeeEEEecC---C--------CCC---HHHHHHHHHHh--ccCCCC-ceEEE
Confidence 457899999999999999753 332 2333333321 1 111 33444444321 122111 23445
Q ss_pred eehHhhh-----cCCh--HHHHHHHHHHhCCc-eeeeChHHHHHHHHh----------hhhccCCCCCCceEEEEeCCC
Q 014133 93 ATAAVRA-----AENK--DEFVECVREKVGFE-VDVLTGEQEAKFVYM----------GVLQFLPVFDRLVLSVDIGGG 153 (430)
Q Consensus 93 ATsA~R~-----A~N~--~~fl~~i~~~tGl~-i~vIsg~eEA~l~~~----------gv~~~~~~~~~~~lv~DIGGG 153 (430)
|....-+ ..|. ....+.+++++|++ |.+.+.-+=+-|.-. |..... ..++.+++-+|.|
T Consensus 62 g~pG~vd~~~i~~~n~~w~~~~~~l~~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~--~~~~~~~v~~GTG 138 (316)
T PRK00292 62 AIAGPVDGDEVRMTNHHWAFSIAAMKQELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPV--PGAPIAVIGPGTG 138 (316)
T ss_pred EEeCcccCCEEEecCCCcccCHHHHHHHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCC--CCCcEEEEEcCCc
Confidence 5543221 1121 11247788899996 999998777666532 211110 1245778877766
No 184
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=35.55 E-value=1.4e+02 Score=31.58 Aligned_cols=81 Identities=17% Similarity=0.148 Sum_probs=55.5
Q ss_pred CCeEEEEEecccceeeeEEEEeCCCcEEEEEeec-ceeeccCCCCCCCCCCHHHHHHHHHHHHH-HHHHHHHc---CCCC
Q 014133 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLK-QPVILGRDLSSSCSISTQSQARSVESLLM-FRDIIQSH---NISR 86 (430)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k-~~vrLg~~~~~~g~ls~e~i~r~~~~L~~-f~~~~~~~---~v~~ 86 (430)
....-+||||.-|.-|++.+-. .+....+.. -.|+|-+..+.++.++++.++.+.+.++. +.++...+ +..
T Consensus 128 ~~~~lv~DIGGGStEl~~g~~~---~~~~~~Sl~~G~v~lt~~~~~~~~~s~~~~~~~~~~~~~~l~~~~~~~~~~~~~- 203 (492)
T COG0248 128 KGDGLVIDIGGGSTELVLGDNF---EIGLLISLPLGCVRLTERFFPDDPISEENFAKARDAVREELEEIAKEYRIAGWA- 203 (492)
T ss_pred CCCEEEEEecCCeEEEEEecCC---ccceeEEeecceEEeehhhcCCCCCCHHHHHHHHHHHHHHHHhhhHHHHhhhhc-
Confidence 4566899999999999998632 222222222 24678888888899999999999888666 34445443 232
Q ss_pred ccEEEEeehHhhh
Q 014133 87 DHTRAVATAAVRA 99 (430)
Q Consensus 87 ~~i~~vATsA~R~ 99 (430)
.+|||+..=.
T Consensus 204 ---~~vg~sGT~r 213 (492)
T COG0248 204 ---GLVGTSGTIR 213 (492)
T ss_pred ---cEEEccHHHH
Confidence 2788886543
No 185
>PRK13331 pantothenate kinase; Reviewed
Probab=35.21 E-value=3.5e+02 Score=25.89 Aligned_cols=18 Identities=11% Similarity=0.181 Sum_probs=16.2
Q ss_pred eEEEEEecccceeeeEEE
Q 014133 14 LFASIDMGTSSFKLLIIR 31 (430)
Q Consensus 14 ~~AvIDIGSNsirL~I~e 31 (430)
.+=+||||=.++.+-+++
T Consensus 8 ~~L~iDiGNT~~~~g~f~ 25 (251)
T PRK13331 8 EWLALMIGNSRLHWGYFS 25 (251)
T ss_pred cEEEEEeCCCcEEEEEEE
Confidence 567999999999999997
No 186
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=35.05 E-value=48 Score=33.11 Aligned_cols=17 Identities=29% Similarity=0.239 Sum_probs=13.5
Q ss_pred chHHHHHHHHHHhhhhc
Q 014133 397 KDLEYLEAACLLHNIGH 413 (430)
Q Consensus 397 ~~r~lL~~Aa~LhdiG~ 413 (430)
..+.-.-+||+|||+|+
T Consensus 102 ~W~~avf~AALlhdlgk 118 (327)
T PF07514_consen 102 AWRYAVFYAALLHDLGK 118 (327)
T ss_pred hhHHHHHHHHHHhccCc
Confidence 33456778999999999
No 187
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=33.72 E-value=75 Score=31.78 Aligned_cols=78 Identities=18% Similarity=0.211 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCce--eeeChHHHHHHHHhhhhccCCCCCCceEEEE
Q 014133 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV--DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVD 149 (430)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i--~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~D 149 (430)
+.+..+.++.+| . ++.+|....+.+ ...+.+.+.+++. |+++ .+.+|+-.-.-.-.++...-. .+.-+|+=
T Consensus 11 ~~~l~~~~~~~g-~--~~liv~~~~~~~-~~~~~v~~~l~~~-~i~~~~~~~~~~p~~~~v~~~~~~~~~--~~~d~IIa 83 (349)
T cd08550 11 IKEIAAILSTFG-S--KVAVVGGKTVLK-KSRPRFEAALAKS-IIVVDVIVFGGECSTEEVVKALCGAEE--QEADVIIG 83 (349)
T ss_pred HHHHHHHHHHcC-C--eEEEEEChHHHH-HHHHHHHHHHHhc-CCeeEEEEcCCCCCHHHHHHHHHHHHh--cCCCEEEE
Confidence 344444556677 3 456666555555 4456666666543 7644 445654111111111111111 12238999
Q ss_pred eCCCceE
Q 014133 150 IGGGSTE 156 (430)
Q Consensus 150 IGGGStE 156 (430)
|||||+=
T Consensus 84 vGGGs~~ 90 (349)
T cd08550 84 VGGGKTL 90 (349)
T ss_pred ecCcHHH
Confidence 9999974
No 188
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=33.40 E-value=1.7e+02 Score=29.52 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHHH-HHHH--HhhhhccCCCCCCceEE
Q 014133 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQE-AKFV--YMGVLQFLPVFDRLVLS 147 (430)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~eE-A~l~--~~gv~~~~~~~~~~~lv 147 (430)
++++..+.++.++.+ ++.+|....+++..=.+.+.+.++ +.|+++.+.++-+. ..+. -.++..... .+.-.|
T Consensus 13 ~l~~l~~~l~~~~~~--~~livt~~~~~~~~~~~~v~~~L~-~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~I 87 (376)
T cd08193 13 SLARLGELLAALGAK--RVLVVTDPGILKAGLIDPLLASLE-AAGIEVTVFDDVEADPPEAVVEAAVEAARA--AGADGV 87 (376)
T ss_pred HHHHHHHHHHHcCCC--eEEEEcCcchhhCccHHHHHHHHH-HcCCeEEEECCCCCCcCHHHHHHHHHHHHh--cCCCEE
Confidence 345555566667764 577776666665433455555443 56888887764321 1111 111111111 122389
Q ss_pred EEeCCCceE
Q 014133 148 VDIGGGSTE 156 (430)
Q Consensus 148 ~DIGGGStE 156 (430)
+=|||||+=
T Consensus 88 IaiGGGs~i 96 (376)
T cd08193 88 IGFGGGSSM 96 (376)
T ss_pred EEeCCchHH
Confidence 999999974
No 189
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=33.40 E-value=1.8e+02 Score=25.23 Aligned_cols=88 Identities=15% Similarity=0.233 Sum_probs=55.1
Q ss_pred CeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEE
Q 014133 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (430)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~v 92 (430)
..+.++|.|+-+|=..+.+.. ...-.++...+.. + -.+ ..++...+++++|++. ..+|
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~-~~~A~pl~~i~~~----~-------~~~-------~~~~~l~~li~~~~~~---~vVV 59 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL-GSLASPLETIKRK----N-------GKP-------QDFNALLKLVKEYQVD---TVVV 59 (141)
T ss_pred ceEEEEecCCceEEEEEecCC-Cccccchhhheec----c-------ccH-------hhHHHHHHHHHHhCCC---EEEE
Confidence 367899999999988887643 1112333222111 0 001 2345555677778874 4455
Q ss_pred e-------ehHhhhcCChHHHHHHHHHHhCCceeeeCh
Q 014133 93 A-------TAAVRAAENKDEFVECVREKVGFEVDVLTG 123 (430)
Q Consensus 93 A-------TsA~R~A~N~~~fl~~i~~~tGl~i~vIsg 123 (430)
| |... .++-...|.++++++++++|...+.
T Consensus 60 GlP~~m~g~~~~-~~~~~~~f~~~L~~r~~lpv~l~DE 96 (141)
T COG0816 60 GLPLNMDGTEGP-RAELARKFAERLKKRFNLPVVLWDE 96 (141)
T ss_pred ecCcCCCCCcch-hHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4 5555 4555789999999999999888764
No 190
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=32.50 E-value=65 Score=26.51 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=13.5
Q ss_pred ccCCCCCCceEEEEeCCCce
Q 014133 136 QFLPVFDRLVLSVDIGGGST 155 (430)
Q Consensus 136 ~~~~~~~~~~lv~DIGGGSt 155 (430)
..++..++-.++.|++|||.
T Consensus 52 ~~~~~~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 52 EELDEGDGVLILTDLGGGSP 71 (116)
T ss_dssp HHCCTTSEEEEEESSTTSHH
T ss_pred HhccCCCcEEEEeeCCCCcc
Confidence 33433345578899999985
No 191
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=31.77 E-value=1.5e+02 Score=29.78 Aligned_cols=80 Identities=16% Similarity=0.182 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHHH-HHH----HHhhhhccCCCCCCceEE
Q 014133 73 LMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQE-AKF----VYMGVLQFLPVFDRLVLS 147 (430)
Q Consensus 73 ~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~eE-A~l----~~~gv~~~~~~~~~~~lv 147 (430)
+++.+.++.++.+ ++.++..+.+.+. =.+.+.+.++...++++.++++-|+ ..+ ........... ++.-++
T Consensus 12 ~~l~~~~~~~~~~--k~livtd~~v~~~-~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~-~r~d~I 87 (344)
T cd08169 12 ESVESYTTRDLFD--QYFFISDSGVADL-IAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAIALGA-NRRTAI 87 (344)
T ss_pred HHHHHHHHhcCCC--eEEEEECccHHHH-HHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHHHcCC-CCCcEE
Confidence 3333445555653 5777777766652 2233333333224777777875333 222 11111111111 234589
Q ss_pred EEeCCCceE
Q 014133 148 VDIGGGSTE 156 (430)
Q Consensus 148 ~DIGGGStE 156 (430)
+=+||||+-
T Consensus 88 IaiGGGsv~ 96 (344)
T cd08169 88 VAVGGGATG 96 (344)
T ss_pred EEECCcHHH
Confidence 999999876
No 192
>PRK13321 pantothenate kinase; Reviewed
Probab=31.59 E-value=74 Score=30.37 Aligned_cols=29 Identities=10% Similarity=0.196 Sum_probs=23.7
Q ss_pred eEEEEeCCCceEEEeeeCCeEeeeeeeeh
Q 014133 145 VLSVDIGGGSTEFVIGKRGKVVFCESVNL 173 (430)
Q Consensus 145 ~lv~DIGGGStEl~~~~~~~~~~~~Sl~l 173 (430)
.+.+||||-++.+.+++++++...+.+|-
T Consensus 2 iL~IDIGnT~ik~gl~~~~~i~~~~~~~T 30 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGDRLLRSFRLPT 30 (256)
T ss_pred EEEEEECCCeEEEEEEECCEEEEEEEEec
Confidence 47899999999999999877776666644
No 193
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=31.32 E-value=64 Score=32.24 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeC---hHHHHHHHHh-hhhccCCCCCCceEE
Q 014133 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLT---GEQEAKFVYM-GVLQFLPVFDRLVLS 147 (430)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIs---g~eEA~l~~~-gv~~~~~~~~~~~lv 147 (430)
+++..+.++.++.+ ++.+|....+.++. .+.+.+.++ +.|+++.+.+ ++.+..+.-. .+...... +.-+|
T Consensus 11 l~~l~~~~~~~~~~--~~livtd~~~~~~~-~~~v~~~l~-~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~--~~d~I 84 (348)
T cd08175 11 LERLPEILKEFGYK--KALIVADENTYAAA-GKKVEALLK-RAGVVVLLIVLPAGDLIADEKAVGRVLKELER--DTDLI 84 (348)
T ss_pred HHHHHHHHHhcCCC--cEEEEECCcHHHHH-HHHHHHHHH-HCCCeeEEeecCCCcccCCHHHHHHHHHHhhc--cCCEE
Confidence 33444555666763 56667666566654 555555554 4688776543 3212222211 11111111 22489
Q ss_pred EEeCCCceE
Q 014133 148 VDIGGGSTE 156 (430)
Q Consensus 148 ~DIGGGStE 156 (430)
+=|||||+-
T Consensus 85 IaIGGGs~~ 93 (348)
T cd08175 85 IAVGSGTIN 93 (348)
T ss_pred EEECCcHHH
Confidence 999999974
No 194
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=31.08 E-value=69 Score=32.21 Aligned_cols=76 Identities=13% Similarity=0.215 Sum_probs=41.4
Q ss_pred HHHHHHHcCCCCccEEEEeehHh-hhcCChHHHHHHHHHHhCCceeeeChH-HHHHHHHh--hhhccCCCCCCceEEEEe
Q 014133 75 FRDIIQSHNISRDHTRAVATAAV-RAAENKDEFVECVREKVGFEVDVLTGE-QEAKFVYM--GVLQFLPVFDRLVLSVDI 150 (430)
Q Consensus 75 f~~~~~~~~v~~~~i~~vATsA~-R~A~N~~~fl~~i~~~tGl~i~vIsg~-eEA~l~~~--gv~~~~~~~~~~~lv~DI 150 (430)
..+.++++| + ++.+|....+ +.+.-.+.+.+.++ +.|+++.+.++- .+..+.-. ++..... .+.-+|+=|
T Consensus 17 l~~~~~~~g-~--r~lvVt~~~~~~~~g~~~~v~~~L~-~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIav 90 (357)
T cd08181 17 HGEELAALG-K--RALIVTGKSSAKKNGSLDDVTKALE-ELGIEYEIFDEVEENPSLETIMEAVEIAKK--FNADFVIGI 90 (357)
T ss_pred HHHHHHHcC-C--EEEEEeCCchHhhcCcHHHHHHHHH-HcCCeEEEeCCCCCCcCHHHHHHHHHHHHh--cCCCEEEEe
Confidence 334455566 3 5676766554 55544566666664 458888887653 22222211 1111111 122489999
Q ss_pred CCCceE
Q 014133 151 GGGSTE 156 (430)
Q Consensus 151 GGGStE 156 (430)
||||+=
T Consensus 91 GGGSvi 96 (357)
T cd08181 91 GGGSPL 96 (357)
T ss_pred CCchHH
Confidence 999974
No 195
>COG4680 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.93 E-value=40 Score=26.96 Aligned_cols=18 Identities=28% Similarity=0.695 Sum_probs=15.1
Q ss_pred EEEEecccceeeeEEEEe
Q 014133 16 ASIDMGTSSFKLLIIRAY 33 (430)
Q Consensus 16 AvIDIGSNsirL~I~e~~ 33 (430)
-|+|||.|+.||++.=.-
T Consensus 57 ~Vfdi~GN~yRLIvhv~y 74 (98)
T COG4680 57 VVFDIGGNKYRLIVHVAY 74 (98)
T ss_pred EEEEcCCCEEEEEEEEEe
Confidence 599999999999987433
No 196
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=29.90 E-value=1.9e+02 Score=29.29 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=40.8
Q ss_pred HHHHHHHHHc---CCCCccEEEEeehHhhh-cCChHHHHHHHHHHhCCceeeeChHH-----HHHHHHhhhhccCCCCCC
Q 014133 73 LMFRDIIQSH---NISRDHTRAVATAAVRA-AENKDEFVECVREKVGFEVDVLTGEQ-----EAKFVYMGVLQFLPVFDR 143 (430)
Q Consensus 73 ~~f~~~~~~~---~v~~~~i~~vATsA~R~-A~N~~~fl~~i~~~tGl~i~vIsg~e-----EA~l~~~gv~~~~~~~~~ 143 (430)
++..+.++.+ |.+ ++.+|....+.+ ..-.+.+.+.++ +.|+++.+.++-+ |.-...........
T Consensus 12 ~~l~~~l~~~~~~g~k--r~livtd~~~~~~~g~~~~v~~~L~-~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~---- 84 (383)
T cd08186 12 EKIGEILKDLKSKGIS--KVLLVTGKSAYKKSGAWDKVEPALD-EHGIEYVLYNKVTPNPTVDQVDEAAKLGREFG---- 84 (383)
T ss_pred HHHHHHHHHhcccCCC--EEEEEcCccHHhhcChHHHHHHHHH-HcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcC----
Confidence 3444444544 553 566676554433 322356666654 5689998887443 11111111111111
Q ss_pred ceEEEEeCCCceE
Q 014133 144 LVLSVDIGGGSTE 156 (430)
Q Consensus 144 ~~lv~DIGGGStE 156 (430)
.-+|+=|||||+=
T Consensus 85 ~D~IIaiGGGS~i 97 (383)
T cd08186 85 AQAVIAIGGGSPI 97 (383)
T ss_pred CCEEEEeCCccHH
Confidence 1379999999974
No 197
>PF07288 DUF1447: Protein of unknown function (DUF1447); InterPro: IPR009907 This family consists of several bacterial proteins of around 70 residues in length. The function of this family is unknown.
Probab=29.66 E-value=47 Score=25.10 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=32.3
Q ss_pred hcCChHHHHHHHHHHhCCceeeeChHHHHHHHHhh
Q 014133 99 AAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMG 133 (430)
Q Consensus 99 ~A~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~g 133 (430)
+|.+..+....+++.|..+|+-|..-+++.|.|--
T Consensus 25 Ea~s~~evR~~ve~~t~yNIEfI~~L~~~~LeYEk 59 (69)
T PF07288_consen 25 EAESEVEVRKLVEDNTPYNIEFIQPLSGKHLEYEK 59 (69)
T ss_pred EcCCHHHHHHHHHhCCCcCEEEEeeccchHHHHhh
Confidence 88999999999999999999999999999998854
No 198
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=29.58 E-value=1e+02 Score=30.65 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=38.9
Q ss_pred HHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHHHHH--HH-HhhhhccCCCCCCceEEEEeCCC
Q 014133 77 DIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAK--FV-YMGVLQFLPVFDRLVLSVDIGGG 153 (430)
Q Consensus 77 ~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~eEA~--l~-~~gv~~~~~~~~~~~lv~DIGGG 153 (430)
+.++.++.. .++.+|....+.+.. ++.+.+.++ +.|+++.+.+++.+.. +. ...+...+.. +.-+++=||||
T Consensus 16 ~~~~~~~~~-~kvlivtd~~~~~~~-~~~i~~~L~-~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~--~~d~IIaiGGG 90 (332)
T cd08549 16 PIINKIGVN-SKIMIVCGNNTYKVA-GKEIIERLE-SNNFTKEVLERDSLLIPDEYELGEVLIKLDK--DTEFLLGIGSG 90 (332)
T ss_pred HHHHHcCCC-CcEEEEECCcHHHHH-HHHHHHHHH-HcCCeEEEEecCCCCCCCHHHHHHHHHHhhc--CCCEEEEECCc
Confidence 344545532 256777766665542 455555543 4588888776433221 11 1111111111 33589999999
Q ss_pred ceE
Q 014133 154 STE 156 (430)
Q Consensus 154 StE 156 (430)
|+-
T Consensus 91 sv~ 93 (332)
T cd08549 91 TII 93 (332)
T ss_pred HHH
Confidence 875
No 199
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=29.56 E-value=1.1e+02 Score=26.06 Aligned_cols=83 Identities=17% Similarity=0.212 Sum_probs=52.1
Q ss_pred EEEecccceeeeEEEEeCCCcE-EEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEe--
Q 014133 17 SIDMGTSSFKLLIIRAYPNGKF-LTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA-- 93 (430)
Q Consensus 17 vIDIGSNsirL~I~e~~~~~~~-~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA-- 93 (430)
+||.|+..+=+.+.+. .+.+ .++..... .. ....+..+.+++++|+++ -.+||
T Consensus 2 aiD~G~kriGvA~~d~--~~~~a~pl~~i~~-----~~--------------~~~~~~~l~~~i~~~~~~---~iVvGlP 57 (130)
T TIGR00250 2 GLDFGTKSIGVAGQDI--TGWTAQGIPTIKA-----QD--------------GEPDWSRIEELLKEWTPD---KIVVGLP 57 (130)
T ss_pred eEccCCCeEEEEEECC--CCCEEeceEEEEe-----cC--------------CcHHHHHHHHHHHHcCCC---EEEEecc
Confidence 6899999887777643 3322 22222111 00 013456777788999984 45677
Q ss_pred ----ehHhhhcCChHHHHHHHHHHhCCceeeeCh
Q 014133 94 ----TAAVRAAENKDEFVECVREKVGFEVDVLTG 123 (430)
Q Consensus 94 ----TsA~R~A~N~~~fl~~i~~~tGl~i~vIsg 123 (430)
-+.=..|.-...|.++++.++|++|...+.
T Consensus 58 ~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~~DE 91 (130)
T TIGR00250 58 LNMDGTEGPLTERAQKFANRLEGRFGVPVVLWDE 91 (130)
T ss_pred CCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 222333445569999999999999998864
No 200
>PF14829 GPAT_N: Glycerol-3-phosphate acyltransferase N-terminal; PDB: 1IUQ_A 1K30_A.
Probab=29.21 E-value=54 Score=25.26 Aligned_cols=41 Identities=17% Similarity=0.299 Sum_probs=32.9
Q ss_pred hHhhhcCChHHHHHHHHHHh---CCceeeeChHHHHHHHHhhhh
Q 014133 95 AAVRAAENKDEFVECVREKV---GFEVDVLTGEQEAKFVYMGVL 135 (430)
Q Consensus 95 sA~R~A~N~~~fl~~i~~~t---Gl~i~vIsg~eEA~l~~~gv~ 135 (430)
..+.+|.|-++|+..|++++ -++-.|-.|-||-|.-|.-+.
T Consensus 3 r~fl~~~~Eqells~IkkeveaGkLP~~va~gmeelY~NYk~AV 46 (77)
T PF14829_consen 3 RTFLDARSEQELLSGIKKEVEAGKLPANVAAGMEELYQNYKNAV 46 (77)
T ss_dssp -GGGG--SHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHH
Confidence 46789999999999999887 588999999999999998554
No 201
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=28.78 E-value=1.9e+02 Score=29.18 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCCCccEEEEeehHh-hhcCChHHHHHHHHHHhCCceeeeChHH-----HHHHHHhhhhccCCCCCCceEE
Q 014133 74 MFRDIIQSHNISRDHTRAVATAAV-RAAENKDEFVECVREKVGFEVDVLTGEQ-----EAKFVYMGVLQFLPVFDRLVLS 147 (430)
Q Consensus 74 ~f~~~~~~~~v~~~~i~~vATsA~-R~A~N~~~fl~~i~~~tGl~i~vIsg~e-----EA~l~~~gv~~~~~~~~~~~lv 147 (430)
+..+.++.++ + ++.+|..... +...=.+.+.+.++ +.|+++.+.++-+ |.-.......... +.-.|
T Consensus 16 ~l~~~~~~~g-~--r~livt~~~~~~~~g~~~~v~~~L~-~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~----~~D~I 87 (380)
T cd08185 16 ELGEEALKPG-K--KALIVTGNGSSKKTGYLDRVIELLK-QAGVEVVVFDKVEPNPTTTTVMEGAALAREE----GCDFV 87 (380)
T ss_pred HHHHHHHhcC-C--eEEEEeCCCchhhccHHHHHHHHHH-HcCCeEEEeCCccCCCCHHHHHHHHHHHHHc----CCCEE
Confidence 3334445556 3 5666665443 44333345555554 3588888887543 2111111111111 22389
Q ss_pred EEeCCCceE
Q 014133 148 VDIGGGSTE 156 (430)
Q Consensus 148 ~DIGGGStE 156 (430)
+-|||||+=
T Consensus 88 iavGGGS~i 96 (380)
T cd08185 88 VGLGGGSSM 96 (380)
T ss_pred EEeCCccHH
Confidence 999999973
No 202
>PF13941 MutL: MutL protein
Probab=28.59 E-value=1e+02 Score=32.29 Aligned_cols=52 Identities=19% Similarity=0.267 Sum_probs=35.7
Q ss_pred EEEEecccceeeeEEEEeCCCcEEEEEeecceeeccC-CCCCCCCCCHHHHHHHHHHHHHH
Q 014133 16 ASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGR-DLSSSCSISTQSQARSVESLLMF 75 (430)
Q Consensus 16 AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~-~~~~~g~ls~e~i~r~~~~L~~f 75 (430)
=++|+||-..+...++.. .+..+++-.-+.++.... ++ ..++.++++.|++-
T Consensus 3 L~~DiGST~Tk~~l~d~~-~~~~~~ig~a~apTTv~~~Dv-------~~G~~~A~~~l~~~ 55 (457)
T PF13941_consen 3 LVVDIGSTYTKVTLFDLV-DGEPRLIGQAEAPTTVEPGDV-------TIGLNNALEQLEEQ 55 (457)
T ss_pred EEEEeCCcceEEeEEecc-CCccEEEEEEeCCCCcCcccH-------HHHHHHHHHHHHHh
Confidence 479999999999999954 567888877777665533 22 24555555555543
No 203
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=28.53 E-value=1.6e+02 Score=31.38 Aligned_cols=81 Identities=21% Similarity=0.331 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHh-------CCc-eeeeChHHHHHHHHhhhhccCCC
Q 014133 69 VESLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKV-------GFE-VDVLTGEQEAKFVYMGVLQFLPV 140 (430)
Q Consensus 69 ~~~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~t-------Gl~-i~vIsg~eEA~l~~~gv~~~~~~ 140 (430)
--+|...++-|..|--.+ ...+|.|- -.+|.+--++.| |++ ++||+..+-|+++| |.-..
T Consensus 142 ~~vl~kmk~tae~yl~~~-v~~avvtv-------pAyfndsqRqaTkdag~iagl~vlrvineptaaalay-gld~k--- 209 (640)
T KOG0102|consen 142 AFVLMKMKETAEAYLGKK-VKNAVITV-------PAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAY-GLDKK--- 209 (640)
T ss_pred HHHHHHHHHHHHHHcCch-hhheeecc-------HHHHhHHHHHHhHhhhhhccceeeccCCccchhHHhh-ccccc---
Confidence 346777788888875432 34556653 245666555555 777 57999999999887 43221
Q ss_pred CCCceEEEEeCCCceEEEeee
Q 014133 141 FDRLVLSVDIGGGSTEFVIGK 161 (430)
Q Consensus 141 ~~~~~lv~DIGGGStEl~~~~ 161 (430)
.++...|+|+|||..-+++.+
T Consensus 210 ~~g~iaV~dLgggtfdisile 230 (640)
T KOG0102|consen 210 EDGVIAVFDLGGGTFDISILE 230 (640)
T ss_pred CCCceEEEEcCCceeeeeeeh
Confidence 145689999999999988754
No 204
>PRK13318 pantothenate kinase; Reviewed
Probab=27.74 E-value=94 Score=29.61 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=24.3
Q ss_pred eEEEEeCCCceEEEeeeCCeEeeeeeeeh
Q 014133 145 VLSVDIGGGSTEFVIGKRGKVVFCESVNL 173 (430)
Q Consensus 145 ~lv~DIGGGStEl~~~~~~~~~~~~Sl~l 173 (430)
.+.+||||-++.+.+++++++...+++|-
T Consensus 2 iL~IDIGnT~iK~al~d~g~i~~~~~~~t 30 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGKLVAHWRIST 30 (258)
T ss_pred EEEEEECCCcEEEEEEECCEEEEEEEEeC
Confidence 47899999999999999888877666654
No 205
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=26.36 E-value=94 Score=29.98 Aligned_cols=82 Identities=20% Similarity=0.199 Sum_probs=45.4
Q ss_pred CCCeEEEEEecccceeeeEEEEeCCCcEEEEEeecc-eeeccCCCCCCCCCCHHHHHHHHHHH----HHHHHHHHHcCCC
Q 014133 11 PQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQ-PVILGRDLSSSCSISTQSQARSVESL----LMFRDIIQSHNIS 85 (430)
Q Consensus 11 ~~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~-~vrLg~~~~~~g~ls~e~i~r~~~~L----~~f~~~~~~~~v~ 85 (430)
..+...+||||+-|+-+..++ ++.+....+..- .+||.+........+++..+.+.+.+ +.+.......+
T Consensus 110 ~~~~~lviDIGGGStEl~~~~---~~~~~~~~Sl~lG~vrl~e~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-- 184 (285)
T PF02541_consen 110 PDKNGLVIDIGGGSTELILFE---NGKVVFSQSLPLGAVRLTERFFKSDPPTAEELEKLREFIRKELEELKWEFPKGG-- 184 (285)
T ss_dssp TTSSEEEEEEESSEEEEEEEE---TTEEEEEEEES--HHHHHHHHSGCSS-HHHHHHHHHHHHHHHHCTTHHHHHHHC--
T ss_pred ccCCEEEEEECCCceEEEEEE---CCeeeEeeeeehHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHhhhcC--
Confidence 345678999999999999885 344433333322 24666666665666666655555433 33333333333
Q ss_pred CccEEEEeehHhh
Q 014133 86 RDHTRAVATAAVR 98 (430)
Q Consensus 86 ~~~i~~vATsA~R 98 (430)
..+.++||...-
T Consensus 185 -~~~~~~g~~~~~ 196 (285)
T PF02541_consen 185 -GTIRIIGTSGTI 196 (285)
T ss_dssp -HHCEEECCCHHH
T ss_pred -CceeeecHHHHH
Confidence 124556665543
No 206
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=25.96 E-value=1.1e+02 Score=30.89 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHH-HHHHHH--hhhhccCCCCCCceEE
Q 014133 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFVY--MGVLQFLPVFDRLVLS 147 (430)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~e-EA~l~~--~gv~~~~~~~~~~~lv 147 (430)
++++..+.++.++.+ ++.+|....+.. .+.+.+.++ +.|+++.+.++-+ +..+.- .++....+ .+.-.|
T Consensus 10 ~l~~l~~~~~~~g~~--~~livtd~~~~~---~~~~~~~l~-~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~I 81 (367)
T cd08182 10 AIAKLPSLLKGLGGK--RVLLVTGPRSAI---ASGLTDILK-PLGTLVVVFDDVQPNPDLEDLAAGIRLLRE--FGPDAV 81 (367)
T ss_pred HHHHHHHHHHhcCCC--eEEEEeCchHHH---HHHHHHHHH-HcCCeEEEEcCcCCCcCHHHHHHHHHHHHh--cCcCEE
Confidence 344555556667763 677787666651 233444443 4578888776543 222111 11111111 112379
Q ss_pred EEeCCCceE
Q 014133 148 VDIGGGSTE 156 (430)
Q Consensus 148 ~DIGGGStE 156 (430)
+=|||||+=
T Consensus 82 IavGGGs~~ 90 (367)
T cd08182 82 LAVGGGSVL 90 (367)
T ss_pred EEeCCcHHH
Confidence 999999974
No 207
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=25.14 E-value=84 Score=21.44 Aligned_cols=25 Identities=8% Similarity=0.252 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHH----HHHHHHHcCCC
Q 014133 61 STQSQARSVESLLM----FRDIIQSHNIS 85 (430)
Q Consensus 61 s~e~i~r~~~~L~~----f~~~~~~~~v~ 85 (430)
+++.|+.++++++. +++.++.|||+
T Consensus 1 tee~l~~Ai~~v~~g~~S~r~AA~~ygVp 29 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMSIRKAAKKYGVP 29 (45)
T ss_dssp -HHHHHHHHHHHHTTSS-HHHHHHHHT--
T ss_pred CHHHHHHHHHHHHhCCCCHHHHHHHHCcC
Confidence 57888999888754 78889999997
No 208
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=24.91 E-value=3e+02 Score=27.60 Aligned_cols=71 Identities=30% Similarity=0.371 Sum_probs=35.4
Q ss_pred HHHHcCCCCccEEEEeehHhhhcCChHHHHHHHH---HHhCCceee--eCh-HH----HHHHHHhhhhccCCCCCCceEE
Q 014133 78 IIQSHNISRDHTRAVATAAVRAAENKDEFVECVR---EKVGFEVDV--LTG-EQ----EAKFVYMGVLQFLPVFDRLVLS 147 (430)
Q Consensus 78 ~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~---~~tGl~i~v--Isg-~e----EA~l~~~gv~~~~~~~~~~~lv 147 (430)
.++.++. .++.+|....+.+ .+.+++. +..|+++.+ +++ +. |.-............ ++.-++
T Consensus 25 ~l~~~~~--~~~livtd~~~~~-----~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~-~r~d~I 96 (358)
T PRK00002 25 LLAPLKG--KKVAIVTDETVAP-----LYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGL-DRSDTL 96 (358)
T ss_pred HHHhcCC--CeEEEEECCchHH-----HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCC-CCCCEE
Confidence 3344444 3566677666654 2444443 345887774 443 22 222221121211221 123489
Q ss_pred EEeCCCceE
Q 014133 148 VDIGGGSTE 156 (430)
Q Consensus 148 ~DIGGGStE 156 (430)
+=+||||+-
T Consensus 97 IavGGGsv~ 105 (358)
T PRK00002 97 IALGGGVIG 105 (358)
T ss_pred EEEcCcHHH
Confidence 999999975
No 209
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=24.52 E-value=1.1e+02 Score=28.56 Aligned_cols=30 Identities=33% Similarity=0.375 Sum_probs=24.8
Q ss_pred eEEEEeCCCceEEEeee-CCeEeeeeeeehh
Q 014133 145 VLSVDIGGGSTEFVIGK-RGKVVFCESVNLG 174 (430)
Q Consensus 145 ~lv~DIGGGStEl~~~~-~~~~~~~~Sl~lG 174 (430)
.+.+|||..|+-.++++ +++++...+.++-
T Consensus 2 ~lgiDiGTts~K~~l~d~~g~iv~~~~~~~~ 32 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDEDGKIVASASRPYP 32 (245)
T ss_dssp EEEEEECSSEEEEEEEETTSCEEEEEEEEET
T ss_pred EEEEEEcccceEEEEEeCCCCEEEEEEEeee
Confidence 47899999999999987 6778877777664
No 210
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=24.50 E-value=73 Score=34.78 Aligned_cols=41 Identities=12% Similarity=0.119 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHHHHhhhhcccCCCC
Q 014133 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKG 419 (430)
Q Consensus 361 ~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa~LhdiG~~I~~~~ 419 (430)
.|+-.|+.||..= -+++ |. +-+|-+++|+=||||+-.++..
T Consensus 492 ~HSvmVAnLAEaA---a~~I---Ga------------n~lLaRVgayYHDIGK~~rP~~ 532 (700)
T COG1480 492 QHSVMVANLAEAA---AEEI---GA------------NSLLARVGAYYHDIGKMKRPLF 532 (700)
T ss_pred cchhhHHHHHHHH---HHHh---CC------------chHHHHHHHHHhhcccccCCcc
Confidence 7999999999873 2222 11 2389999999999999888754
No 211
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=24.49 E-value=60 Score=33.37 Aligned_cols=19 Identities=26% Similarity=0.616 Sum_probs=17.5
Q ss_pred CeEEEEEecccceeeeEEE
Q 014133 13 TLFASIDMGTSSFKLLIIR 31 (430)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e 31 (430)
+.++.||+||.+++.+|++
T Consensus 2 ~y~lGIDIGSTsTKaVVmd 20 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMD 20 (432)
T ss_pred ceEEEEEcCchhEEEEEEc
Confidence 5789999999999999996
No 212
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=24.37 E-value=71 Score=32.45 Aligned_cols=92 Identities=18% Similarity=0.154 Sum_probs=57.3
Q ss_pred HcCCCCccEEEEeehHhhh-cCChHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEe
Q 014133 81 SHNISRDHTRAVATAAVRA-AENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVI 159 (430)
Q Consensus 81 ~~~v~~~~i~~vATsA~R~-A~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~ 159 (430)
...++|...=++-|++.=+ -.|++...+...+...++.=-|- .++-++.++ .....++|+|||+++|-++-
T Consensus 99 ~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~--k~~v~~AFA------~GrstalVvDiGa~~~svsP 170 (426)
T KOG0679|consen 99 QLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLA--KTAVCTAFA------NGRSTALVVDIGATHTSVSP 170 (426)
T ss_pred hhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEe--chHHHHHHh------cCCCceEEEEecCCCceeee
Confidence 3456666666677776544 24666667777776666544443 233333332 22345899999999999999
Q ss_pred eeCCeEee--eeeeehhHHHHHH
Q 014133 160 GKRGKVVF--CESVNLGHVSLSE 180 (430)
Q Consensus 160 ~~~~~~~~--~~Sl~lG~vrl~e 180 (430)
+.+|-++. .+.=|||.=-|..
T Consensus 171 V~DG~Vlqk~vvks~laGdFl~~ 193 (426)
T KOG0679|consen 171 VHDGYVLQKGVVKSPLAGDFLND 193 (426)
T ss_pred eecceEeeeeeEecccchHHHHH
Confidence 99987654 2344666554443
No 213
>PF11762 Arabinose_Iso_C: L-arabinose isomerase C-terminal domain; InterPro: IPR024664 The Escherichia coli araBAD operon consists of three genes encoding three enzymes that convert L-arabinose to D-xylulose-5 phosphate. L-arabinose isomerase (AraA) 5.3.1.4 from EC catalyses the conversion of L-arabinose to L-ribulose as the first step in the pathway of L-arabinose utilization as a carbon source []. This entry represents a C-terminal non-catalytic domain in L-arabinose isomerase.; PDB: 4F2D_A 2AJT_C 2HXG_C.
Probab=24.18 E-value=1e+02 Score=25.79 Aligned_cols=19 Identities=26% Similarity=0.604 Sum_probs=15.8
Q ss_pred eEEEEEecccceeeeEEEEe
Q 014133 14 LFASIDMGTSSFKLLIIRAY 33 (430)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~ 33 (430)
....+|+| |-+||++.+++
T Consensus 32 ~~slvD~G-~rFRLi~n~v~ 50 (115)
T PF11762_consen 32 VVSLVDMG-DRFRLIVNEVD 50 (115)
T ss_dssp EEEEEE-S-SSEEEEEEEEE
T ss_pred EEEEeecC-CcEEEEEEEEE
Confidence 46899999 99999999886
No 214
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.92 E-value=85 Score=34.60 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=24.8
Q ss_pred ceEEEEeCCCceEEEeeeCCeEeeeeeeehh
Q 014133 144 LVLSVDIGGGSTEFVIGKRGKVVFCESVNLG 174 (430)
Q Consensus 144 ~~lv~DIGGGStEl~~~~~~~~~~~~Sl~lG 174 (430)
+.+++|+||=||-++.+.+|.+..+..-.++
T Consensus 279 ~~i~~DmGGTStDva~i~~G~pe~~~e~~v~ 309 (674)
T COG0145 279 NAIVFDMGGTSTDVALIIDGEPEISSETEVA 309 (674)
T ss_pred CEEEEEcCCcceeeeeeecCcEEeeccceEE
Confidence 4899999999999999998887655444433
No 215
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=23.07 E-value=3.9e+02 Score=26.85 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCcee--eeCh-HHHHHHHH----hhhhccCCCCCCce
Q 014133 73 LMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVD--VLTG-EQEAKFVY----MGVLQFLPVFDRLV 145 (430)
Q Consensus 73 ~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~--vIsg-~eEA~l~~----~gv~~~~~~~~~~~ 145 (430)
+++.+.++.++.+ ++.+|.-..+++. =.+.+.+.++ ..|+++. ++++ +.+-.+.- ......... +++.
T Consensus 12 ~~l~~~l~~~g~~--rvlvVtd~~v~~~-~~~~l~~~L~-~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~-dr~~ 86 (355)
T cd08197 12 DSVLGYLPELNAD--KYLLVTDSNVEDL-YGHRLLEYLR-EAGAPVELLSVPSGEEHKTLSTLSDLVERALALGA-TRRS 86 (355)
T ss_pred HHHHHHHHhcCCC--eEEEEECccHHHH-HHHHHHHHHH-hcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCC-CCCc
Confidence 3333445556653 5777776666654 2334444443 3477654 4543 33211111 111111122 3345
Q ss_pred EEEEeCCCceE
Q 014133 146 LSVDIGGGSTE 156 (430)
Q Consensus 146 lv~DIGGGStE 156 (430)
+++=+||||+-
T Consensus 87 ~IIAvGGGsv~ 97 (355)
T cd08197 87 VIVALGGGVVG 97 (355)
T ss_pred EEEEECCcHHH
Confidence 89999999975
No 216
>PF08765 Mor: Mor transcription activator family; InterPro: IPR014875 Mor (Middle operon regulator) is a sequence specific DNA binding protein. It mediates transcription activation through its interactions with the C-terminal domains of the alpha and sigma subunits of bacterial RNA polymerase. The N-terminal region of Mor is the dimerisation region, and the C-terminal contains a helix-turn-helix motif which binds DNA []. ; PDB: 1RR7_A.
Probab=22.41 E-value=4.3e+02 Score=21.48 Aligned_cols=66 Identities=17% Similarity=0.256 Sum_probs=28.9
Q ss_pred hcCC-CCccchhhHHHHHHHHHHHHHHhCCCeEEECCcc-hHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHHHhcCcc
Q 014133 282 RRER-FFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYG-LGEGVVADSLAKVFDGYDLNANARWRSVVRLAMRFNNKK 358 (430)
Q Consensus 282 ~~~g-l~~~Rad~i~~g~~il~~l~~~~~~~~i~vs~~g-lreGll~~~l~~~~~~~~~~~~~~~~s~~~la~ry~~~~ 358 (430)
+..| +.++-++.+ |.-++..+.+.+|=..++++..- +.--+-...+.+.+.. .++..||++|+...
T Consensus 19 ~~~g~i~~~~a~~i--g~~~~~~L~~~~gG~~iyiP~~~~~~~~~R~~~I~~~f~G---------~n~~eLA~kyglS~ 86 (108)
T PF08765_consen 19 ERLGEIDAELAEII--GEEVALKLCRYFGGQQIYIPKCDRLLRALRNREIRREFNG---------MNVRELARKYGLSE 86 (108)
T ss_dssp HHTS-S-----TTS--HHHHHHHHHHHH-SS------SHHHHHHHHHHHHHHH--S---------S-HHHHHHHHT--H
T ss_pred HHcCCcchhHHHHH--HHHHHHHHHHHHCCEeEEeeCccHHHHHHHHHHHHHHhCC---------CCHHHHHHHHCcCH
Confidence 3345 777888887 55677999999999999997653 1111111222222221 24567999998754
No 217
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=22.25 E-value=7.4e+02 Score=24.17 Aligned_cols=105 Identities=10% Similarity=0.071 Sum_probs=66.0
Q ss_pred HHHHHHHHHHcCCCCccEEEEeehH-------hhhcCChHHHHHHHHHHhCCceeeeChHHH-HHHHHhhhhccCCCCCC
Q 014133 72 LLMFRDIIQSHNISRDHTRAVATAA-------VRAAENKDEFVECVREKVGFEVDVLTGEQE-AKFVYMGVLQFLPVFDR 143 (430)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA-------~R~A~N~~~fl~~i~~~tGl~i~vIsg~eE-A~l~~~gv~~~~~~~~~ 143 (430)
+.-..+++++.++++.++.+||.+. +|-+- .+.+.+...+++++.-+|--+= |+-.|+. +. + ...
T Consensus 53 ~~~i~~~l~~~~~~~~did~iav~~GPG~~tglrvg~---~~Ak~la~~~~~p~~~v~hl~~ha~~a~~~--s~-~-~~~ 125 (305)
T TIGR00329 53 PPLLERALIESNVDKSEIDLIAYTQGPGLGGSLRVGA---TFARSLALSLDKPLIGVNHLLGHIYAPRLD--TN-I-LQF 125 (305)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEEecCCCchhhHHHHH---HHHHHHHHHhCCCEeecccHHHHHHHhhhh--cC-C-CCC
Confidence 3345566777788776677777655 88764 4566666778888887765442 2222221 11 1 124
Q ss_pred ceEEEEeCCCceEEEeeeCC-eEe-eeeeeehhHHHHHHhhc
Q 014133 144 LVLSVDIGGGSTEFVIGKRG-KVV-FCESVNLGHVSLSEKFG 183 (430)
Q Consensus 144 ~~lv~DIGGGStEl~~~~~~-~~~-~~~Sl~lG~vrl~e~f~ 183 (430)
+.+++=+-||+|++..++++ ++. ...+++...-++.+.+.
T Consensus 126 ~~l~l~vsGG~t~l~~~~~~~~~~~l~~t~d~S~GrlfD~va 167 (305)
T TIGR00329 126 PFVSLLVSGGHTQIIAVKGIGDYEVLGETLDDAVGEAFDKVA 167 (305)
T ss_pred CcEEEEEcCCceEEEEEeCCCcEEEeeeecCchhhHHHHHHH
Confidence 57888899999999998876 432 12366666666666553
No 218
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=22.05 E-value=27 Score=35.14 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeCh-HHHHHHHH--hhhhccCCCCCCceEEE
Q 014133 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTG-EQEAKFVY--MGVLQFLPVFDRLVLSV 148 (430)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg-~eEA~l~~--~gv~~~~~~~~~~~lv~ 148 (430)
++++.+.++.+| ++.+|...++++..-.+.+.+.+ ++.|+++.+.++ ..+..+.- .++...... +.-.|+
T Consensus 11 l~~l~~~l~~~g----r~lvVt~~~~~~~~~~~~v~~~L-~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~II 83 (366)
T PF00465_consen 11 LEELGEELKRLG----RVLVVTDPSLSKSGLVDRVLDAL-EEAGIEVQVFDGVGPNPTLEDVDEAAEQARKF--GADCII 83 (366)
T ss_dssp GGGHHHHHHCTT----EEEEEEEHHHHHHTHHHHHHHHH-HHTTCEEEEEEEESSS-BHHHHHHHHHHHHHT--TSSEEE
T ss_pred HHHHHHHHHhcC----CEEEEECchHHhCccHHHHHHHH-hhCceEEEEEecCCCCCcHHHHHHHHHHHHhc--CCCEEE
Confidence 455666667665 46778888888755445555554 345899888772 11211111 111111111 123899
Q ss_pred EeCCCceE
Q 014133 149 DIGGGSTE 156 (430)
Q Consensus 149 DIGGGStE 156 (430)
-|||||+=
T Consensus 84 aiGGGS~~ 91 (366)
T PF00465_consen 84 AIGGGSVM 91 (366)
T ss_dssp EEESHHHH
T ss_pred EcCCCCcC
Confidence 99999974
No 219
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=22.03 E-value=1.3e+02 Score=30.48 Aligned_cols=63 Identities=22% Similarity=0.214 Sum_probs=33.1
Q ss_pred cEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHHHHHHH--HhhhhccCCCCCCceEEEEeCCCceE
Q 014133 88 HTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFV--YMGVLQFLPVFDRLVLSVDIGGGSTE 156 (430)
Q Consensus 88 ~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~--~~gv~~~~~~~~~~~lv~DIGGGStE 156 (430)
++.+|....+. -.+.+.+.++ +.|+++.+.+...|..+. ..++..... .+.-+|+=|||||+=
T Consensus 24 r~livtd~~~~---~~~~v~~~L~-~~g~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIaiGGGS~~ 88 (374)
T cd08183 24 RVLLVTGASSL---RAAWLIEALR-AAGIEVTHVVVAGEPSVELVDAAVAEARN--AGCDVVIAIGGGSVI 88 (374)
T ss_pred cEEEEECCchH---HHHHHHHHHH-HcCCeEEEecCCCCcCHHHHHHHHHHHHh--cCCCEEEEecCchHH
Confidence 56667655444 2333444433 358888877654444332 112211111 122389999999974
No 220
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=21.85 E-value=2.3e+02 Score=26.20 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=22.6
Q ss_pred CeEEEEEecccceeeeEEEEeCCCcEE
Q 014133 13 TLFASIDMGTSSFKLLIIRAYPNGKFL 39 (430)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~ 39 (430)
-.+=+||+|-.++|..++++..++.+.
T Consensus 63 G~~LalDlGGTnlRv~~V~L~g~~~~~ 89 (206)
T PF00349_consen 63 GDFLALDLGGTNLRVALVELSGNGKVE 89 (206)
T ss_dssp EEEEEEEESSSSEEEEEEEEESSSEEE
T ss_pred ceEEEEeecCcEEEEEEEEEcCCCCce
Confidence 368899999999999999998666443
No 221
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=21.38 E-value=2.5e+02 Score=24.54 Aligned_cols=27 Identities=30% Similarity=0.630 Sum_probs=24.5
Q ss_pred EEeCCCceEEEeee-CCeEeeeeeeehh
Q 014133 148 VDIGGGSTEFVIGK-RGKVVFCESVNLG 174 (430)
Q Consensus 148 ~DIGGGStEl~~~~-~~~~~~~~Sl~lG 174 (430)
+|||+-++++.+++ +++++...++|+-
T Consensus 2 idig~~~i~~~l~d~~g~ii~~~~~~~~ 29 (179)
T PF00480_consen 2 IDIGGTSIRIALVDLDGEIIYSESIPTP 29 (179)
T ss_dssp EEEESSEEEEEEEETTSCEEEEEEEEHH
T ss_pred EEECCCEEEEEEECCCCCEEEEEEEECC
Confidence 79999999999988 8889999999876
No 222
>PRK03011 butyrate kinase; Provisional
Probab=21.29 E-value=2.6e+02 Score=28.22 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=31.5
Q ss_pred ceEEEEeCCCceEEEeeeCCeEeeeeeeehhHHHHH
Q 014133 144 LVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLS 179 (430)
Q Consensus 144 ~~lv~DIGGGStEl~~~~~~~~~~~~Sl~lG~vrl~ 179 (430)
..|++.=|+-||.+.+|++.+.++..++.-..-.|.
T Consensus 3 ~il~inpgststk~a~~~~~~~~~~~~~~h~~~~~~ 38 (358)
T PRK03011 3 RILVINPGSTSTKIAVFEDEKPIFEETLRHSAEELE 38 (358)
T ss_pred EEEEEcCCCchheEEEEcCCceeeeeccccCHHHHh
Confidence 378999999999999999999999999977766555
No 223
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=21.21 E-value=4.3e+02 Score=21.35 Aligned_cols=62 Identities=11% Similarity=0.040 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCCCccEEEEeehHhhhcCC----------hHHHHHHHHHHh---CCceeeeChHHHH--HHHHhhh
Q 014133 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAEN----------KDEFVECVREKV---GFEVDVLTGEQEA--KFVYMGV 134 (430)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N----------~~~fl~~i~~~t---Gl~i~vIsg~eEA--~l~~~gv 134 (430)
.++.++.+++.|++ .++.++..+.+.+..+ -.+.++.+++.. |++|.+|++..=+ .+...++
T Consensus 17 a~km~~~a~~~gi~-~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~~~Yg~~~~dg~~v 93 (99)
T cd05565 17 ANALNKGAKERGVP-LEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTGKQYIELTRDPDGA 93 (99)
T ss_pred HHHHHHHHHHCCCc-EEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCHHHHhHHhCCHHHH
Confidence 35667778888996 3566666666655322 245677777644 8999999987655 4444444
No 224
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=21.07 E-value=7.3e+02 Score=23.65 Aligned_cols=129 Identities=14% Similarity=0.133 Sum_probs=70.9
Q ss_pred EEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHcCCCCccEEEEe
Q 014133 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQ-SQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (430)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e-~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (430)
+..||||.+.+++.+++.+ |. ++.+.+.++. . . -+++ -++.+.+.++++.. .+ .-.+||
T Consensus 3 ~lgvdig~~~i~~~l~dl~--g~--i~~~~~~~~~--~-----~-~~~~~~~~~i~~~i~~~~~-----~~---~~igi~ 62 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGED--GQ--IRQRRQIPTP--A-----S-QTPEALRQALSALVSPLQA-----QA---DRVAVA 62 (291)
T ss_pred EEEEEECCCEEEEEEEcCC--Cc--EEEEEEecCC--C-----C-CCHHHHHHHHHHHHHHhhh-----cC---cEEEEe
Confidence 5789999999999999853 54 3333332211 0 0 1233 45555555665532 12 124454
Q ss_pred ehHhhh--------cC-----ChHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEee
Q 014133 94 TAAVRA--------AE-----NKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (430)
Q Consensus 94 TsA~R~--------A~-----N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~ 160 (430)
+...=+ .. +.-.+.+.+++++|++|-+-+.-.=+-+.-.- .. ....++.+.+-+|.| +.-.++
T Consensus 63 ~pG~vd~~~~~~~~~~~~~~w~~~~l~~~l~~~~~~pv~v~NDa~a~a~aE~~--~g-~~~~~~~~~l~ig~G-iG~giv 138 (291)
T PRK05082 63 STGIINDGILTALNPHNLGGLLHFPLVQTLEQLTDLPTIALNDAQAAAWAEYQ--AL-PDDIRNMVFITVSTG-VGGGIV 138 (291)
T ss_pred CcccccCCeeEEecCCCCccccCCChHHHHHHHhCCCEEEECcHHHHHHHHHH--hc-CCCCCCEEEEEECCC-cceEEE
Confidence 443211 11 23357777888999999988865554433211 11 112346888888844 333445
Q ss_pred eCCeEee
Q 014133 161 KRGKVVF 167 (430)
Q Consensus 161 ~~~~~~~ 167 (430)
-+|++..
T Consensus 139 ~~G~~~~ 145 (291)
T PRK05082 139 LNGKLLT 145 (291)
T ss_pred ECCEEee
Confidence 5676654
No 225
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=20.89 E-value=1.5e+02 Score=24.00 Aligned_cols=54 Identities=11% Similarity=0.248 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHHHHHHHHhhhh
Q 014133 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVL 135 (430)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~ 135 (430)
|.+.+..+++.|| ++.+|+...... .+.|++ .++++..|..-++-+.|..+|+.
T Consensus 2 L~~~~~~l~~~gv---~lv~I~~g~~~~---~~~f~~----~~~~p~~ly~D~~~~lY~~lg~~ 55 (115)
T PF13911_consen 2 LSRRKPELEAAGV---KLVVIGCGSPEG---IEKFCE----LTGFPFPLYVDPERKLYKALGLK 55 (115)
T ss_pred hhHhHHHHHHcCC---eEEEEEcCCHHH---HHHHHh----ccCCCCcEEEeCcHHHHHHhCCc
Confidence 4555666777898 477888665533 355654 49999999999999999999876
No 226
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=20.79 E-value=2.1e+02 Score=30.18 Aligned_cols=67 Identities=12% Similarity=0.233 Sum_probs=48.3
Q ss_pred eEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Q 014133 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNI 84 (430)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v 84 (430)
.+=+||+|..++|...+.+..++. .+....+..++...+-.. -+++-.+.+..+|..|-+.-.-++.
T Consensus 87 ~~lalDLGGTn~Rv~~v~L~g~~~--~~~~~~~~~~ip~~~m~g--t~~~Lfd~Ia~~l~~F~~~~~~~~~ 153 (474)
T KOG1369|consen 87 KFLALDLGGTNFRVLLVKLGGGRT--SVRMYNKIYAIPEEIMQG--TGEELFDFIARCLADFLDKMGLKGA 153 (474)
T ss_pred CEEEEecCCCceEEEEEEecCCcc--cceeeeeeEecCHHHHcC--chHHHHHHHHHHHHHHHHHhccccc
Confidence 577999999999999999875443 333444455666655432 5678889999999999877655444
No 227
>PRK12408 glucokinase; Provisional
Probab=20.56 E-value=3.1e+02 Score=27.26 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=52.7
Q ss_pred CeEEEEEecccceeeeEEEEeCCCcE----EEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcc
Q 014133 13 TLFASIDMGTSSFKLLIIRAYPNGKF----LTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDH 88 (430)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~----~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~ 88 (430)
..+-+||||..++|+-+++.+ +.. .++...+.++. ..+.++ +++++|.+- ...+ .
T Consensus 16 ~~~L~~DIGGT~i~~al~d~~--g~~~~~~~~~~~~~~~t~-----------~~~~~~---~~i~~~~~~--~~~~---~ 74 (336)
T PRK12408 16 ESFVAADVGGTHVRVALVCAS--PDAAKPVELLDYRTYRCA-----------DYPSLA---AILADFLAE--CAPV---R 74 (336)
T ss_pred ccEEEEEcChhhhheeEEecc--CCccccccccceeEecCC-----------CccCHH---HHHHHHHhc--CCCc---C
Confidence 347899999999999999643 321 22222222211 112233 334444321 1122 2
Q ss_pred EEEEeehHh-h-h----cCCh--HHHHHHHHHHhCCc-eeeeChHHHHHHH
Q 014133 89 TRAVATAAV-R-A----AENK--DEFVECVREKVGFE-VDVLTGEQEAKFV 130 (430)
Q Consensus 89 i~~vATsA~-R-~----A~N~--~~fl~~i~~~tGl~-i~vIsg~eEA~l~ 130 (430)
-.++|.... . + +.|- ..+-+.+++++|++ |.+++.-+=+-|.
T Consensus 75 ~igIg~pG~~~~~g~v~~~nl~w~~~~~~l~~~~~~~~V~l~ND~naaa~g 125 (336)
T PRK12408 75 RGVIASAGYALDDGRVITANLPWTLSPEQIRAQLGLQAVHLVNDFEAVAYA 125 (336)
T ss_pred EEEEEecCCceECCEEEecCCCCccCHHHHHHHcCCCeEEEeecHHHHHcc
Confidence 355555553 1 1 2232 23457788899995 9999987766655
No 228
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=20.26 E-value=1.5e+02 Score=30.29 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=38.0
Q ss_pred cEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHH-HHHHHH--hhhhccCCCCCCceEEEEeCCCceE
Q 014133 88 HTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFVY--MGVLQFLPVFDRLVLSVDIGGGSTE 156 (430)
Q Consensus 88 ~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~e-EA~l~~--~gv~~~~~~~~~~~lv~DIGGGStE 156 (430)
++.+|....+++..=.+.+.+.+++ -|+++.+.++-+ +..+.- .++..... .+.-+|+=|||||+=
T Consensus 23 k~liVtd~~~~~~g~~~~v~~~L~~-~gi~~~~f~~v~~~p~~~~v~~~~~~~~~--~~~D~IIaiGGGS~i 91 (398)
T cd08178 23 RAFIVTDRFMVKLGYVDKVIDVLKR-RGVETEVFSDVEPDPSLETVRKGLELMNS--FKPDTIIALGGGSPM 91 (398)
T ss_pred eEEEEcChhHHhCccHHHHHHHHHH-CCCeEEEecCCCCCcCHHHHHHHHHHHHh--cCCCEEEEeCCccHH
Confidence 5777777777765555566666654 488888887522 222221 11111111 122389999999974
No 229
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=20.17 E-value=2.8e+02 Score=28.58 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=51.2
Q ss_pred EeehHhhhcC---ChHHHHHHHHHHhCCceeeeChHH-----------HHHHHHhhhhccCCC--CCCceEEEEeCCCce
Q 014133 92 VATAAVRAAE---NKDEFVECVREKVGFEVDVLTGEQ-----------EAKFVYMGVLQFLPV--FDRLVLSVDIGGGST 155 (430)
Q Consensus 92 vATsA~R~A~---N~~~fl~~i~~~tGl~i~vIsg~e-----------EA~l~~~gv~~~~~~--~~~~~lv~DIGGGSt 155 (430)
+-++-+|=|. =+.++..-|++.+.+|+-.+|=.| ||...-..-..-+.. .+.-.+=+|+|+-+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~l~tr~ea~~~~~~~~~~~~~~~~~g~~lGIDiGSTtt 156 (404)
T TIGR03286 77 FIATCFRCAEGALVRNEVRRYIQENTNLPVVSYSFTERTTAGELLTRMEALTTIVRRKSLLARERQEGLTLGIDSGSTTT 156 (404)
T ss_pred EEeehhcccchhhHHHHHHHHHHhcCCCCEEEEecccCCchhHHHHHHHHHHHHHhhhhhhhhhccCCEEEEEEcChhhe
Confidence 4455677654 367888889999999988877665 444443321111111 122367899999999
Q ss_pred EEEeeeCCeEeee
Q 014133 156 EFVIGKRGKVVFC 168 (430)
Q Consensus 156 El~~~~~~~~~~~ 168 (430)
.+++.++++++..
T Consensus 157 K~Vl~dd~~Ii~~ 169 (404)
T TIGR03286 157 KAVVMEDNEVIGT 169 (404)
T ss_pred eeEEEcCCeEEEE
Confidence 9999998877654
No 230
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=20.04 E-value=55 Score=23.58 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=20.5
Q ss_pred HHcCCCChHHHhhcCCCCccchhhHHHHH
Q 014133 270 LCCGGDGEVERVRRERFFKRRSEFIVAGA 298 (430)
Q Consensus 270 l~~~~~~~~e~~~~~gl~~~Rad~i~~g~ 298 (430)
+...+.+ ++.+++|+++..++-|+..+
T Consensus 32 l~~a~~~--~L~~i~Gig~~~a~~i~~~~ 58 (60)
T PF14520_consen 32 LANADPE--ELAEIPGIGEKTAEKIIEAA 58 (60)
T ss_dssp HHTSHHH--HHHTSTTSSHHHHHHHHHHH
T ss_pred HHcCCHH--HHhcCCCCCHHHHHHHHHHH
Confidence 4445666 78889999999998887653
Done!