Query 014134
Match_columns 430
No_of_seqs 213 out of 2523
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 02:10:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014134.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014134hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 2.5E-62 5.4E-67 427.0 22.9 356 10-382 56-424 (476)
2 KOG0331 ATP-dependent RNA heli 100.0 3.1E-61 6.8E-66 447.4 26.1 357 14-391 90-474 (519)
3 KOG0345 ATP-dependent RNA heli 100.0 1.5E-60 3.3E-65 425.2 22.3 384 20-430 11-421 (567)
4 KOG0328 Predicted ATP-dependen 100.0 1.3E-59 2.8E-64 393.3 24.5 355 13-385 25-393 (400)
5 KOG0342 ATP-dependent RNA heli 100.0 2.6E-59 5.7E-64 420.1 21.0 390 11-430 78-492 (543)
6 TIGR00614 recQ_fam ATP-depende 100.0 1.2E-56 2.5E-61 434.6 40.2 344 29-378 2-346 (470)
7 COG0513 SrmB Superfamily II DN 100.0 9.3E-58 2E-62 442.7 31.3 347 14-380 28-396 (513)
8 PRK04837 ATP-dependent RNA hel 100.0 1.7E-57 3.8E-62 436.5 32.7 346 14-380 7-377 (423)
9 PLN03137 ATP-dependent DNA hel 100.0 1.5E-56 3.3E-61 447.5 40.1 358 18-377 440-799 (1195)
10 PTZ00110 helicase; Provisional 100.0 1.1E-56 2.3E-61 439.6 34.8 359 13-391 128-510 (545)
11 PRK04537 ATP-dependent RNA hel 100.0 2.4E-56 5.2E-61 438.4 33.0 347 15-380 9-379 (572)
12 PRK11776 ATP-dependent RNA hel 100.0 6.8E-56 1.5E-60 430.1 35.5 346 15-379 4-363 (460)
13 PLN00206 DEAD-box ATP-dependen 100.0 3.2E-56 6.9E-61 435.2 33.0 353 13-386 119-496 (518)
14 PRK11057 ATP-dependent DNA hel 100.0 4.5E-55 9.7E-60 434.0 40.6 350 19-377 6-355 (607)
15 KOG0343 RNA Helicase [RNA proc 100.0 6.9E-58 1.5E-62 415.2 18.2 389 13-429 67-479 (758)
16 PRK10590 ATP-dependent RNA hel 100.0 1.1E-55 2.3E-60 426.7 32.4 346 16-380 2-367 (456)
17 KOG0340 ATP-dependent RNA heli 100.0 3.9E-56 8.4E-61 383.9 24.6 357 12-383 4-379 (442)
18 PRK11634 ATP-dependent RNA hel 100.0 7E-55 1.5E-59 430.2 36.4 347 15-380 6-367 (629)
19 KOG0333 U5 snRNP-like RNA heli 100.0 5.1E-56 1.1E-60 401.0 24.7 350 12-378 242-637 (673)
20 KOG0338 ATP-dependent RNA heli 100.0 1.1E-56 2.3E-61 404.0 19.4 348 14-377 180-545 (691)
21 PRK11192 ATP-dependent RNA hel 100.0 1E-54 2.2E-59 419.4 33.9 344 16-378 2-365 (434)
22 KOG0336 ATP-dependent RNA heli 100.0 9.4E-56 2E-60 388.0 23.4 367 12-398 216-605 (629)
23 TIGR01389 recQ ATP-dependent D 100.0 1E-53 2.2E-58 425.9 40.0 340 28-378 3-344 (591)
24 PRK01297 ATP-dependent RNA hel 100.0 3.8E-54 8.2E-59 418.8 34.5 348 14-381 86-458 (475)
25 KOG0348 ATP-dependent RNA heli 100.0 6.2E-56 1.3E-60 401.2 18.8 354 13-378 134-567 (708)
26 KOG0326 ATP-dependent RNA heli 100.0 6E-56 1.3E-60 377.4 15.5 356 13-387 83-451 (459)
27 PTZ00424 helicase 45; Provisio 100.0 3.7E-53 8.1E-58 405.9 31.8 349 14-380 27-389 (401)
28 COG0514 RecQ Superfamily II DN 100.0 3.7E-52 8.1E-57 394.2 34.5 347 26-379 5-351 (590)
29 KOG0335 ATP-dependent RNA heli 100.0 5.3E-54 1.1E-58 392.3 20.1 361 16-388 75-467 (482)
30 KOG0346 RNA helicase [RNA proc 100.0 1.4E-53 2.9E-58 377.6 21.6 348 11-377 15-422 (569)
31 KOG0332 ATP-dependent RNA heli 100.0 9E-53 2E-57 365.2 24.4 359 11-386 86-465 (477)
32 KOG0347 RNA helicase [RNA proc 100.0 3.1E-51 6.7E-56 371.9 23.5 370 14-395 180-601 (731)
33 TIGR03817 DECH_helic helicase/ 100.0 9.8E-50 2.1E-54 401.2 34.9 338 18-373 17-396 (742)
34 KOG0339 ATP-dependent RNA heli 100.0 1.2E-48 2.6E-53 351.7 25.9 363 11-390 219-600 (731)
35 KOG0341 DEAD-box protein abstr 100.0 1.6E-50 3.5E-55 352.8 11.8 345 13-379 168-546 (610)
36 PRK02362 ski2-like helicase; P 100.0 1.2E-47 2.6E-52 390.4 31.9 378 16-418 2-455 (737)
37 KOG0327 Translation initiation 100.0 3.3E-48 7E-53 339.6 20.0 353 14-385 25-390 (397)
38 KOG0334 RNA helicase [RNA proc 100.0 4.6E-47 1E-51 370.5 23.5 360 11-387 361-742 (997)
39 KOG0350 DEAD-box ATP-dependent 100.0 2.3E-46 4.9E-51 336.8 22.8 354 15-379 127-554 (620)
40 KOG4284 DEAD box protein [Tran 100.0 6.9E-47 1.5E-51 349.3 19.2 341 13-373 23-388 (980)
41 KOG0352 ATP-dependent DNA heli 100.0 1.1E-45 2.4E-50 326.3 25.0 352 26-377 7-374 (641)
42 KOG0344 ATP-dependent RNA heli 100.0 2.4E-46 5.2E-51 344.4 21.3 360 20-396 141-522 (593)
43 TIGR00580 mfd transcription-re 100.0 7.2E-45 1.6E-49 369.2 33.7 333 19-377 433-788 (926)
44 KOG0351 ATP-dependent DNA heli 100.0 1.6E-44 3.5E-49 361.5 31.4 354 24-377 250-604 (941)
45 PRK13767 ATP-dependent helicas 100.0 4.2E-44 9.2E-49 367.5 33.9 321 22-363 18-396 (876)
46 PRK00254 ski2-like helicase; P 100.0 1.5E-44 3.4E-49 366.8 29.3 374 16-417 2-444 (720)
47 KOG0353 ATP-dependent DNA heli 100.0 1.6E-43 3.4E-48 308.7 27.8 363 13-375 69-477 (695)
48 PRK10917 ATP-dependent DNA hel 100.0 7.2E-43 1.6E-47 350.4 36.0 328 23-375 247-603 (681)
49 PRK10689 transcription-repair 100.0 4.4E-43 9.4E-48 363.6 34.1 369 20-414 583-975 (1147)
50 PRK01172 ski2-like helicase; P 100.0 2.3E-43 5E-48 356.8 31.2 378 16-418 2-435 (674)
51 KOG0337 ATP-dependent RNA heli 100.0 6.7E-45 1.5E-49 320.9 15.8 350 14-380 20-383 (529)
52 TIGR00643 recG ATP-dependent D 100.0 2.6E-42 5.7E-47 344.2 36.0 315 24-363 222-564 (630)
53 COG1201 Lhr Lhr-like helicases 100.0 4E-42 8.7E-47 337.6 30.2 323 21-364 7-361 (814)
54 KOG0952 DNA/RNA helicase MER3/ 100.0 1.1E-41 2.4E-46 330.5 27.5 384 21-425 95-551 (1230)
55 COG1202 Superfamily II helicas 100.0 2.2E-40 4.8E-45 303.0 21.4 330 17-364 196-552 (830)
56 TIGR02621 cas3_GSU0051 CRISPR- 100.0 6E-39 1.3E-43 317.1 28.6 311 25-362 3-388 (844)
57 PRK09751 putative ATP-dependen 100.0 9E-39 1.9E-43 333.1 28.0 288 58-363 1-383 (1490)
58 COG1204 Superfamily II helicas 100.0 1.2E-38 2.7E-43 317.4 25.6 323 20-365 14-408 (766)
59 COG1111 MPH1 ERCC4-like helica 100.0 1E-37 2.2E-42 283.3 28.9 313 35-367 12-483 (542)
60 PRK14701 reverse gyrase; Provi 100.0 1.5E-37 3.2E-42 329.6 33.4 334 22-376 64-467 (1638)
61 PHA02558 uvsW UvsW helicase; P 100.0 4.2E-38 9E-43 306.6 24.9 297 37-361 113-449 (501)
62 KOG0951 RNA helicase BRR2, DEA 100.0 5.3E-38 1.2E-42 308.7 23.8 386 20-426 294-762 (1674)
63 TIGR01587 cas3_core CRISPR-ass 100.0 2.6E-37 5.6E-42 291.6 26.4 304 55-366 1-337 (358)
64 PRK09401 reverse gyrase; Revie 100.0 3E-37 6.6E-42 320.9 28.7 306 25-351 68-430 (1176)
65 PHA02653 RNA helicase NPH-II; 100.0 1.1E-36 2.3E-41 299.6 29.3 299 41-370 167-519 (675)
66 TIGR03158 cas3_cyano CRISPR-as 100.0 1.8E-35 3.8E-40 275.9 30.1 300 42-350 1-357 (357)
67 TIGR01970 DEAH_box_HrpB ATP-de 100.0 6.5E-36 1.4E-40 301.0 28.3 301 43-368 7-339 (819)
68 KOG0349 Putative DEAD-box RNA 100.0 1.6E-37 3.4E-42 275.3 13.5 293 78-380 286-630 (725)
69 TIGR00603 rad25 DNA repair hel 100.0 7.6E-36 1.6E-40 292.3 26.4 297 38-368 255-610 (732)
70 COG1200 RecG RecG-like helicas 100.0 5.4E-35 1.2E-39 276.7 31.2 336 17-377 242-607 (677)
71 PRK11664 ATP-dependent RNA hel 100.0 1.5E-35 3.2E-40 299.1 26.7 300 43-368 10-342 (812)
72 TIGR01054 rgy reverse gyrase. 100.0 1.3E-34 2.8E-39 301.8 31.7 292 24-337 65-409 (1171)
73 KOG0354 DEAD-box like helicase 100.0 2.3E-35 5.1E-40 283.3 20.9 323 35-374 59-538 (746)
74 KOG0329 ATP-dependent RNA heli 100.0 1.5E-36 3.3E-41 251.3 10.8 314 13-379 40-370 (387)
75 PRK13766 Hef nuclease; Provisi 100.0 1.3E-33 2.8E-38 291.2 33.2 313 35-366 12-480 (773)
76 PRK12898 secA preprotein trans 100.0 7.4E-34 1.6E-38 275.2 29.2 320 32-366 98-587 (656)
77 COG1205 Distinct helicase fami 100.0 4E-34 8.7E-39 289.1 28.1 327 24-365 57-422 (851)
78 PRK09200 preprotein translocas 100.0 2.7E-33 5.8E-38 277.0 28.8 313 31-366 72-542 (790)
79 COG1197 Mfd Transcription-repa 100.0 7.7E-33 1.7E-37 276.2 30.3 380 12-417 569-972 (1139)
80 PRK04914 ATP-dependent helicas 100.0 1.7E-32 3.7E-37 277.9 33.3 314 38-365 152-603 (956)
81 COG1061 SSL2 DNA or RNA helica 100.0 3.8E-33 8.2E-38 266.4 27.0 292 37-357 35-382 (442)
82 PRK05580 primosome assembly pr 100.0 3.4E-32 7.3E-37 272.3 33.1 312 38-366 144-550 (679)
83 TIGR03714 secA2 accessory Sec 100.0 5.9E-33 1.3E-37 272.0 26.9 312 38-366 68-538 (762)
84 TIGR00963 secA preprotein tran 100.0 2.2E-32 4.8E-37 266.3 28.1 313 31-366 50-518 (745)
85 KOG0947 Cytoplasmic exosomal R 100.0 3.6E-33 7.8E-38 268.7 21.8 321 25-373 285-733 (1248)
86 TIGR00595 priA primosomal prot 100.0 4.2E-31 9E-36 255.3 26.9 289 57-362 1-378 (505)
87 PRK11131 ATP-dependent RNA hel 100.0 5.3E-31 1.2E-35 270.7 28.7 297 41-368 77-414 (1294)
88 KOG0948 Nuclear exosomal RNA h 100.0 4.5E-31 9.7E-36 248.5 15.2 317 34-377 126-552 (1041)
89 PRK09694 helicase Cas3; Provis 100.0 8.5E-29 1.9E-33 249.6 31.5 312 34-354 282-664 (878)
90 COG4581 Superfamily II RNA hel 100.0 8.9E-30 1.9E-34 254.3 23.4 310 31-364 113-536 (1041)
91 TIGR01967 DEAH_box_HrpA ATP-de 100.0 4.1E-29 8.8E-34 257.8 27.1 301 44-369 73-408 (1283)
92 PLN03142 Probable chromatin-re 100.0 4.2E-28 9.2E-33 246.8 27.0 310 38-362 169-594 (1033)
93 PRK11448 hsdR type I restricti 100.0 1.2E-27 2.6E-32 248.0 28.5 311 38-361 413-812 (1123)
94 COG4098 comFA Superfamily II D 100.0 5E-26 1.1E-30 197.1 26.4 300 38-369 97-420 (441)
95 PRK12906 secA preprotein trans 100.0 3.2E-26 6.9E-31 225.4 27.6 319 31-366 74-554 (796)
96 KOG0950 DNA polymerase theta/e 100.0 6.9E-27 1.5E-31 227.0 22.5 331 32-380 217-626 (1008)
97 PRK12904 preprotein translocas 99.9 1.2E-25 2.6E-30 222.2 27.4 312 32-366 76-574 (830)
98 COG1203 CRISPR-associated heli 99.9 1.2E-25 2.5E-30 227.5 23.6 320 39-365 196-550 (733)
99 PRK13104 secA preprotein trans 99.9 7.8E-25 1.7E-29 216.7 25.3 135 243-379 427-608 (896)
100 COG1110 Reverse gyrase [DNA re 99.9 1.8E-23 3.8E-28 204.6 27.3 291 24-336 69-416 (1187)
101 KOG0385 Chromatin remodeling c 99.9 6.7E-24 1.4E-28 201.2 22.5 311 37-362 166-594 (971)
102 COG1198 PriA Primosomal protei 99.9 2.4E-23 5.3E-28 204.2 25.4 321 37-372 197-610 (730)
103 TIGR00631 uvrb excinuclease AB 99.9 2.2E-22 4.8E-27 199.4 32.2 132 244-376 426-564 (655)
104 cd00268 DEADc DEAD-box helicas 99.9 8.4E-24 1.8E-28 183.3 19.6 181 17-215 1-196 (203)
105 PRK12899 secA preprotein trans 99.9 5.3E-23 1.1E-27 203.5 26.4 121 243-366 551-682 (970)
106 COG1643 HrpA HrpA-like helicas 99.9 2.3E-23 5E-28 207.4 22.9 308 40-368 52-390 (845)
107 KOG0949 Predicted helicase, DE 99.9 1.1E-22 2.3E-27 197.3 24.4 104 284-387 964-1068(1330)
108 PRK13107 preprotein translocas 99.9 1.6E-22 3.4E-27 199.9 23.4 137 243-381 432-614 (908)
109 KOG0387 Transcription-coupled 99.9 9.3E-23 2E-27 194.3 19.9 313 37-361 204-652 (923)
110 TIGR00348 hsdR type I site-spe 99.9 1.1E-21 2.4E-26 196.7 28.8 291 39-352 239-634 (667)
111 KOG0922 DEAH-box RNA helicase 99.9 3.1E-22 6.8E-27 188.6 22.5 299 44-367 57-392 (674)
112 PRK05298 excinuclease ABC subu 99.9 5.5E-21 1.2E-25 191.0 30.8 141 246-387 432-588 (652)
113 COG0556 UvrB Helicase subunit 99.9 6.3E-22 1.4E-26 181.3 21.0 168 193-368 386-560 (663)
114 KOG0951 RNA helicase BRR2, DEA 99.9 6.2E-23 1.4E-27 203.3 15.0 361 38-428 1143-1557(1674)
115 TIGR01407 dinG_rel DnaQ family 99.9 1E-19 2.2E-24 188.3 32.8 184 195-380 597-831 (850)
116 PF00270 DEAD: DEAD/DEAH box h 99.9 1.9E-21 4.2E-26 163.5 16.4 154 40-206 1-165 (169)
117 KOG0390 DNA repair protein, SN 99.9 2.8E-20 6.1E-25 181.7 23.9 313 38-362 238-702 (776)
118 KOG0389 SNF2 family DNA-depend 99.9 1.6E-20 3.4E-25 179.1 21.2 320 35-366 397-889 (941)
119 PRK12900 secA preprotein trans 99.9 1.9E-20 4.1E-25 186.0 21.7 123 243-367 581-713 (1025)
120 KOG0384 Chromodomain-helicase 99.9 2.7E-20 5.8E-25 185.1 21.2 315 37-365 369-811 (1373)
121 KOG1123 RNA polymerase II tran 99.9 2.9E-21 6.2E-26 175.3 12.4 306 36-370 300-658 (776)
122 COG4096 HsdR Type I site-speci 99.8 8.2E-21 1.8E-25 183.3 14.0 287 37-352 164-525 (875)
123 KOG0923 mRNA splicing factor A 99.8 6.4E-20 1.4E-24 171.7 19.5 307 38-365 265-606 (902)
124 KOG0924 mRNA splicing factor A 99.8 5.4E-20 1.2E-24 172.7 17.2 306 39-365 357-697 (1042)
125 PRK07246 bifunctional ATP-depe 99.8 1.2E-17 2.6E-22 170.5 31.1 120 257-379 646-799 (820)
126 PRK12326 preprotein translocas 99.8 2.2E-17 4.8E-22 160.0 28.7 317 32-366 73-548 (764)
127 cd00079 HELICc Helicase superf 99.8 4.3E-19 9.3E-24 142.4 14.0 118 244-361 12-131 (131)
128 KOG0392 SNF2 family DNA-depend 99.8 2.8E-18 6E-23 170.5 21.6 307 38-362 975-1449(1549)
129 KOG0920 ATP-dependent RNA heli 99.8 3.4E-18 7.3E-23 170.1 20.2 305 39-365 174-544 (924)
130 KOG1000 Chromatin remodeling p 99.8 1.9E-17 4.2E-22 150.5 21.6 324 37-380 197-620 (689)
131 KOG4150 Predicted ATP-dependen 99.8 2.2E-18 4.7E-23 159.0 15.4 337 22-364 270-639 (1034)
132 KOG0926 DEAH-box RNA helicase 99.8 3.7E-18 8.1E-23 163.1 17.5 300 45-364 263-703 (1172)
133 PF00271 Helicase_C: Helicase 99.8 3.5E-19 7.5E-24 128.7 8.1 78 276-353 1-78 (78)
134 KOG0925 mRNA splicing factor A 99.8 4.4E-17 9.5E-22 147.9 22.4 317 14-365 24-387 (699)
135 PRK13103 secA preprotein trans 99.8 1.1E-16 2.3E-21 159.1 24.0 121 243-366 432-592 (913)
136 KOG0953 Mitochondrial RNA heli 99.7 9.4E-17 2E-21 148.1 18.8 280 55-377 193-488 (700)
137 PRK08074 bifunctional ATP-depe 99.7 7.3E-15 1.6E-19 153.0 32.9 123 257-379 751-909 (928)
138 PRK12903 secA preprotein trans 99.7 1.7E-15 3.7E-20 149.1 26.0 317 32-366 73-540 (925)
139 KOG0386 Chromatin remodeling c 99.7 1.9E-17 4.2E-22 162.0 11.7 324 37-376 393-847 (1157)
140 COG4889 Predicted helicase [Ge 99.7 9.6E-18 2.1E-22 161.7 9.4 317 37-362 160-583 (1518)
141 smart00487 DEXDc DEAD-like hel 99.7 1.6E-16 3.5E-21 137.1 15.8 165 34-215 4-182 (201)
142 TIGR03117 cas_csf4 CRISPR-asso 99.7 2E-14 4.3E-19 140.8 30.5 168 195-365 373-616 (636)
143 KOG0391 SNF2 family DNA-depend 99.7 9.2E-16 2E-20 151.7 20.2 131 246-377 1265-1397(1958)
144 PF04851 ResIII: Type III rest 99.7 1.3E-16 2.9E-21 135.9 11.6 151 38-205 3-184 (184)
145 CHL00122 secA preprotein trans 99.7 8.7E-15 1.9E-19 145.0 23.7 277 32-325 71-491 (870)
146 smart00490 HELICc helicase sup 99.7 2.3E-16 5.1E-21 115.2 8.7 81 273-353 2-82 (82)
147 KOG0388 SNF2 family DNA-depend 99.7 3E-15 6.5E-20 141.7 17.1 123 257-379 1043-1166(1185)
148 PRK14873 primosome assembly pr 99.7 3.5E-14 7.6E-19 140.9 24.4 280 57-365 164-539 (665)
149 PRK11747 dinG ATP-dependent DN 99.6 8.5E-13 1.8E-17 133.5 31.7 126 248-378 526-689 (697)
150 COG1199 DinG Rad3-related DNA 99.6 8.8E-14 1.9E-18 141.6 24.7 114 247-364 469-616 (654)
151 PRK12902 secA preprotein trans 99.6 5.1E-13 1.1E-17 132.4 27.0 125 39-171 84-218 (939)
152 TIGR00604 rad3 DNA repair heli 99.6 3.4E-12 7.5E-17 130.1 28.8 69 33-101 5-83 (705)
153 TIGR02562 cas3_yersinia CRISPR 99.5 1E-12 2.2E-17 132.3 22.5 325 39-370 409-899 (1110)
154 KOG1002 Nucleotide excision re 99.5 9.6E-13 2.1E-17 120.3 18.7 110 258-367 638-751 (791)
155 cd00046 DEXDc DEAD-like helica 99.5 1.9E-13 4.2E-18 110.8 12.3 134 54-203 1-144 (144)
156 KOG1015 Transcription regulato 99.5 1.5E-12 3.2E-17 127.3 16.6 120 245-364 1127-1274(1567)
157 KOG4439 RNA polymerase II tran 99.5 3.4E-12 7.4E-17 121.3 18.0 118 258-375 746-869 (901)
158 PRK12901 secA preprotein trans 99.4 1.1E-11 2.3E-16 124.5 20.8 136 243-381 611-764 (1112)
159 COG0553 HepA Superfamily II DN 99.4 1.9E-11 4.1E-16 129.4 20.8 119 245-363 693-818 (866)
160 PF02399 Herpes_ori_bp: Origin 99.4 3.7E-11 8.1E-16 118.2 18.1 282 55-365 51-388 (824)
161 PF06862 DUF1253: Protein of u 99.3 1.3E-09 2.8E-14 102.1 25.9 237 135-374 130-424 (442)
162 COG0610 Type I site-specific r 99.3 3.7E-10 8E-15 117.6 21.8 277 54-352 274-636 (962)
163 PF07652 Flavi_DEAD: Flaviviru 99.3 5.3E-12 1.1E-16 98.3 6.1 132 53-207 4-140 (148)
164 PF00176 SNF2_N: SNF2 family N 99.2 1.8E-11 3.9E-16 112.8 8.3 157 42-216 1-185 (299)
165 COG0653 SecA Preprotein transl 99.0 7.6E-08 1.7E-12 95.9 22.0 317 38-365 78-545 (822)
166 KOG2340 Uncharacterized conser 99.0 2.7E-08 6E-13 92.4 15.5 335 37-374 215-677 (698)
167 KOG1016 Predicted DNA helicase 98.8 1.7E-07 3.7E-12 90.8 15.4 117 258-374 719-856 (1387)
168 KOG0921 Dosage compensation co 98.6 4E-07 8.6E-12 89.8 12.9 301 44-363 384-772 (1282)
169 PF13307 Helicase_C_2: Helicas 98.6 3E-07 6.5E-12 76.4 8.8 113 250-365 2-150 (167)
170 smart00488 DEXDc2 DEAD-like he 98.6 4.3E-07 9.3E-12 82.4 10.0 67 34-101 5-84 (289)
171 smart00489 DEXDc3 DEAD-like he 98.6 4.3E-07 9.3E-12 82.4 10.0 67 34-101 5-84 (289)
172 KOG0952 DNA/RNA helicase MER3/ 98.5 8.4E-09 1.8E-13 103.0 -1.9 272 18-310 909-1207(1230)
173 PRK15483 type III restriction- 98.5 4.6E-06 1E-10 85.4 15.5 72 308-379 501-582 (986)
174 PF13872 AAA_34: P-loop contai 98.5 1.9E-06 4.1E-11 76.3 11.1 157 38-207 37-224 (303)
175 PF07517 SecA_DEAD: SecA DEAD- 98.4 2.9E-06 6.3E-11 75.0 11.7 123 32-171 72-210 (266)
176 PF13604 AAA_30: AAA domain; P 98.4 1E-06 2.3E-11 75.2 7.9 60 38-97 1-65 (196)
177 COG3587 Restriction endonuclea 98.3 6.8E-05 1.5E-09 74.4 18.1 74 307-380 482-568 (985)
178 TIGR00596 rad1 DNA repair prot 98.3 1E-05 2.2E-10 82.7 13.0 61 140-205 11-74 (814)
179 KOG0383 Predicted helicase [Ge 98.1 9E-07 1.9E-11 87.2 1.5 276 37-321 294-696 (696)
180 PF13086 AAA_11: AAA domain; P 98.1 8E-06 1.7E-10 72.2 7.2 63 38-100 1-75 (236)
181 PF02562 PhoH: PhoH-like prote 98.1 1.3E-05 2.7E-10 68.1 7.1 55 36-90 2-61 (205)
182 KOG1803 DNA helicase [Replicat 98.0 1.2E-05 2.7E-10 76.7 6.4 63 37-99 184-250 (649)
183 PF13245 AAA_19: Part of AAA d 98.0 2.1E-05 4.6E-10 55.4 6.0 53 46-98 2-62 (76)
184 KOG1001 Helicase-like transcri 97.9 8.2E-06 1.8E-10 81.5 4.6 101 260-360 541-643 (674)
185 TIGR01448 recD_rel helicase, p 97.9 0.00011 2.4E-09 75.2 12.7 65 30-95 316-385 (720)
186 PRK10875 recD exonuclease V su 97.9 8.5E-05 1.8E-09 74.1 11.1 77 24-100 137-221 (615)
187 KOG1513 Nuclear helicase MOP-3 97.9 0.00083 1.8E-08 66.4 17.2 76 302-377 851-938 (1300)
188 KOG1802 RNA helicase nonsense 97.9 1.8E-05 4E-10 76.1 5.8 82 26-108 399-484 (935)
189 PF09848 DUF2075: Uncharacteri 97.9 5.4E-05 1.2E-09 71.2 8.3 46 55-100 3-53 (352)
190 TIGR01447 recD exodeoxyribonuc 97.8 0.00016 3.4E-09 72.1 11.6 61 40-100 147-215 (586)
191 PRK10536 hypothetical protein; 97.7 0.00027 5.9E-09 61.8 10.1 55 35-89 56-115 (262)
192 smart00492 HELICc3 helicase su 97.7 0.00035 7.5E-09 56.0 9.9 77 287-363 26-136 (141)
193 smart00491 HELICc2 helicase su 97.7 0.00034 7.3E-09 56.2 9.3 93 271-363 4-137 (142)
194 PRK08181 transposase; Validate 97.6 0.0011 2.5E-08 59.2 12.5 55 39-94 88-149 (269)
195 PF13871 Helicase_C_4: Helicas 97.5 0.00047 1E-08 61.1 8.9 79 299-377 52-142 (278)
196 PF13401 AAA_22: AAA domain; P 97.5 0.00045 9.7E-09 54.8 8.1 21 52-72 3-23 (131)
197 TIGR00376 DNA helicase, putati 97.5 0.00034 7.4E-09 70.6 8.9 67 37-103 156-226 (637)
198 KOG1805 DNA replication helica 97.5 0.001 2.3E-08 67.3 11.6 142 18-172 654-810 (1100)
199 cd00009 AAA The AAA+ (ATPases 97.4 0.0016 3.4E-08 52.5 10.2 35 53-87 19-56 (151)
200 KOG1132 Helicase of the DEAD s 97.4 0.00031 6.7E-09 70.2 6.7 70 34-104 18-136 (945)
201 PF05970 PIF1: PIF1-like helic 97.4 0.00067 1.5E-08 64.0 8.4 56 38-93 1-65 (364)
202 PRK12723 flagellar biosynthesi 97.4 0.0089 1.9E-07 56.4 15.5 55 157-215 253-309 (388)
203 COG1875 NYN ribonuclease and A 97.3 0.00036 7.9E-09 63.1 5.6 60 32-91 222-289 (436)
204 COG2256 MGS1 ATPase related to 97.3 0.0013 2.8E-08 60.5 9.0 37 161-206 107-143 (436)
205 PF00580 UvrD-helicase: UvrD/R 97.3 0.00043 9.2E-09 64.1 6.3 60 39-100 1-67 (315)
206 PF12340 DUF3638: Protein of u 97.3 0.0039 8.5E-08 53.6 11.4 82 15-100 3-91 (229)
207 PRK06526 transposase; Provisio 97.3 0.001 2.2E-08 59.1 8.1 44 49-93 94-140 (254)
208 PRK04296 thymidine kinase; Pro 97.3 0.0007 1.5E-08 57.6 6.4 32 55-86 4-38 (190)
209 TIGR02768 TraA_Ti Ti-type conj 97.3 0.0018 3.9E-08 66.8 10.4 57 38-94 352-412 (744)
210 PRK13889 conjugal transfer rel 97.2 0.0033 7.1E-08 66.1 11.0 58 35-93 344-405 (988)
211 smart00382 AAA ATPases associa 97.1 0.0012 2.6E-08 52.8 6.2 38 53-90 2-42 (148)
212 PRK08727 hypothetical protein; 97.1 0.0041 8.8E-08 54.8 10.0 32 54-85 42-76 (233)
213 COG1222 RPT1 ATP-dependent 26S 97.1 0.0083 1.8E-07 54.5 11.7 141 12-201 145-298 (406)
214 PRK14974 cell division protein 97.1 0.022 4.7E-07 52.7 14.9 124 55-212 142-273 (336)
215 PRK12377 putative replication 97.1 0.0096 2.1E-07 52.6 12.1 43 54-97 102-147 (248)
216 PRK11889 flhF flagellar biosyn 97.1 0.023 5.1E-07 53.1 14.8 125 54-215 242-374 (436)
217 PRK07952 DNA replication prote 97.1 0.011 2.3E-07 52.2 12.0 53 40-93 78-141 (244)
218 PF00448 SRP54: SRP54-type pro 97.1 0.022 4.7E-07 48.5 13.5 61 151-215 76-137 (196)
219 PRK06921 hypothetical protein; 97.1 0.028 6E-07 50.5 14.8 40 53-93 117-160 (266)
220 PF00004 AAA: ATPase family as 97.0 0.0017 3.6E-08 51.5 5.8 32 56-87 1-32 (132)
221 PRK06893 DNA replication initi 97.0 0.0041 8.8E-08 54.6 8.4 47 159-207 92-138 (229)
222 PRK06835 DNA replication prote 96.9 0.02 4.4E-07 52.9 12.8 41 53-94 183-226 (329)
223 TIGR02760 TraI_TIGR conjugativ 96.9 0.11 2.4E-06 59.5 20.7 59 38-96 429-492 (1960)
224 cd01124 KaiC KaiC is a circadi 96.8 0.01 2.2E-07 50.3 9.7 47 56-103 2-51 (187)
225 KOG0989 Replication factor C, 96.8 0.0061 1.3E-07 54.1 7.9 34 42-75 40-79 (346)
226 COG1484 DnaC DNA replication p 96.8 0.017 3.7E-07 51.4 10.9 65 34-99 79-153 (254)
227 PRK08084 DNA replication initi 96.8 0.011 2.4E-07 52.1 9.7 32 54-85 46-80 (235)
228 PRK14722 flhF flagellar biosyn 96.8 0.11 2.3E-06 48.8 16.3 53 157-213 214-267 (374)
229 PRK08116 hypothetical protein; 96.7 0.039 8.5E-07 49.6 13.0 42 55-97 116-160 (268)
230 PRK13826 Dtr system oriT relax 96.7 0.011 2.4E-07 62.7 10.7 58 37-94 380-441 (1102)
231 PF05496 RuvB_N: Holliday junc 96.7 0.0027 5.8E-08 54.3 5.1 20 55-74 52-71 (233)
232 PRK14956 DNA polymerase III su 96.7 0.024 5.2E-07 54.6 11.5 18 56-73 43-60 (484)
233 PRK13342 recombination factor 96.6 0.012 2.5E-07 56.8 9.3 19 54-72 37-55 (413)
234 PF13173 AAA_14: AAA domain 96.6 0.018 3.9E-07 45.4 8.7 37 159-202 62-98 (128)
235 PRK05642 DNA replication initi 96.6 0.016 3.5E-07 51.0 9.3 33 54-86 46-81 (234)
236 PRK13341 recombination factor 96.6 0.013 2.9E-07 59.9 9.7 19 54-72 53-71 (725)
237 cd01120 RecA-like_NTPases RecA 96.5 0.051 1.1E-06 44.6 11.7 35 56-90 2-39 (165)
238 KOG0739 AAA+-type ATPase [Post 96.5 0.028 6E-07 49.8 10.0 118 47-210 155-284 (439)
239 PRK05703 flhF flagellar biosyn 96.5 0.086 1.9E-06 50.7 14.5 55 158-216 299-355 (424)
240 COG1419 FlhF Flagellar GTP-bin 96.5 0.41 9E-06 44.9 18.0 125 53-216 203-336 (407)
241 TIGR02881 spore_V_K stage V sp 96.5 0.026 5.6E-07 50.7 10.2 18 54-71 43-60 (261)
242 KOG0741 AAA+-type ATPase [Post 96.5 0.024 5.2E-07 54.2 9.8 70 18-88 492-574 (744)
243 PRK08533 flagellar accessory p 96.4 0.056 1.2E-06 47.4 11.8 51 52-103 23-76 (230)
244 PRK14712 conjugal transfer nic 96.4 0.018 3.9E-07 63.3 9.7 57 38-94 835-900 (1623)
245 PF05621 TniB: Bacterial TniB 96.3 0.033 7.2E-07 50.0 9.7 18 54-71 62-79 (302)
246 PRK00149 dnaA chromosomal repl 96.3 0.042 9E-07 53.7 11.3 43 54-97 149-196 (450)
247 PRK12422 chromosomal replicati 96.3 0.042 9.1E-07 53.2 11.1 39 54-93 142-183 (445)
248 PHA02544 44 clamp loader, smal 96.3 0.025 5.5E-07 52.4 9.4 40 159-203 101-140 (316)
249 COG3421 Uncharacterized protei 96.3 0.13 2.8E-06 50.1 13.5 55 295-352 315-384 (812)
250 PRK05973 replicative DNA helic 96.3 0.098 2.1E-06 45.8 12.0 85 17-103 20-116 (237)
251 PRK06731 flhF flagellar biosyn 96.2 0.27 5.8E-06 44.1 15.0 125 54-215 76-208 (270)
252 PRK05707 DNA polymerase III su 96.2 0.016 3.6E-07 53.6 7.6 34 38-71 3-40 (328)
253 PTZ00112 origin recognition co 96.2 0.066 1.4E-06 55.0 12.1 17 56-72 784-800 (1164)
254 PRK09183 transposase/IS protei 96.2 0.05 1.1E-06 48.7 10.4 43 50-93 99-144 (259)
255 PRK04195 replication factor C 96.2 0.057 1.2E-06 53.2 11.6 21 53-73 39-59 (482)
256 PF00308 Bac_DnaA: Bacterial d 96.2 0.045 9.7E-07 47.7 9.6 47 158-206 97-143 (219)
257 PHA02533 17 large terminase pr 96.2 0.049 1.1E-06 53.9 10.8 63 38-100 59-126 (534)
258 cd01122 GP4d_helicase GP4d_hel 96.2 0.12 2.7E-06 46.6 12.9 38 49-86 26-67 (271)
259 PRK12323 DNA polymerase III su 96.1 0.025 5.5E-07 56.3 8.6 18 55-72 40-57 (700)
260 KOG2028 ATPase related to the 96.1 0.027 5.7E-07 51.4 7.9 42 54-95 163-207 (554)
261 KOG1133 Helicase of the DEAD s 96.1 0.15 3.1E-06 50.5 13.4 110 251-364 623-779 (821)
262 PLN03025 replication factor C 96.1 0.079 1.7E-06 49.1 11.5 44 158-207 99-142 (319)
263 TIGR02928 orc1/cdc6 family rep 96.1 0.042 9.1E-07 52.1 9.9 18 54-71 41-58 (365)
264 PF05876 Terminase_GpA: Phage 96.1 0.034 7.5E-07 55.4 9.6 63 38-100 16-85 (557)
265 KOG0991 Replication factor C, 96.1 0.011 2.4E-07 50.3 4.9 19 54-72 49-67 (333)
266 PRK12727 flagellar biosynthesi 96.0 0.4 8.8E-06 46.9 15.9 53 157-213 427-479 (559)
267 PRK14964 DNA polymerase III su 96.0 0.046 9.9E-07 53.2 9.6 20 54-73 36-55 (491)
268 COG1474 CDC6 Cdc6-related prot 96.0 0.17 3.7E-06 47.6 13.2 18 54-71 43-60 (366)
269 CHL00181 cbbX CbbX; Provisiona 96.0 0.092 2E-06 47.7 11.0 18 54-71 60-77 (287)
270 PRK10919 ATP-dependent DNA hel 96.0 0.014 3.1E-07 59.7 6.4 62 38-101 2-70 (672)
271 TIGR03420 DnaA_homol_Hda DnaA 96.0 0.054 1.2E-06 47.4 9.4 19 53-71 38-56 (226)
272 PRK12724 flagellar biosynthesi 95.9 0.36 7.8E-06 45.9 14.9 55 157-215 298-356 (432)
273 TIGR01241 FtsH_fam ATP-depende 95.9 0.056 1.2E-06 53.5 10.2 18 54-71 89-106 (495)
274 KOG0726 26S proteasome regulat 95.9 0.13 2.9E-06 45.5 11.0 56 12-70 179-236 (440)
275 PRK00411 cdc6 cell division co 95.9 0.089 1.9E-06 50.5 11.3 18 54-71 56-73 (394)
276 PRK08769 DNA polymerase III su 95.9 0.04 8.6E-07 50.7 8.4 36 36-71 2-44 (319)
277 KOG0729 26S proteasome regulat 95.9 0.26 5.7E-06 43.1 12.6 78 13-93 172-250 (435)
278 PTZ00454 26S protease regulato 95.9 0.086 1.9E-06 50.2 10.8 56 14-72 141-198 (398)
279 PRK08903 DnaA regulatory inact 95.9 0.077 1.7E-06 46.5 9.9 18 53-70 42-59 (227)
280 TIGR00362 DnaA chromosomal rep 95.9 0.081 1.7E-06 50.9 10.8 39 54-93 137-180 (405)
281 PRK10917 ATP-dependent DNA hel 95.9 0.044 9.5E-07 56.4 9.3 77 257-333 309-390 (681)
282 PRK14087 dnaA chromosomal repl 95.9 0.11 2.3E-06 50.6 11.5 44 54-98 142-190 (450)
283 TIGR03015 pepcterm_ATPase puta 95.8 0.049 1.1E-06 49.1 8.7 33 40-72 25-62 (269)
284 PRK11823 DNA repair protein Ra 95.8 0.08 1.7E-06 51.4 10.5 57 46-103 68-132 (446)
285 PRK03992 proteasome-activating 95.8 0.074 1.6E-06 50.7 10.1 19 53-71 165-183 (389)
286 PRK05986 cob(I)alamin adenolsy 95.8 0.076 1.6E-06 44.6 8.8 138 52-209 21-163 (191)
287 PRK05580 primosome assembly pr 95.8 0.059 1.3E-06 55.3 9.8 77 257-334 189-266 (679)
288 TIGR00595 priA primosomal prot 95.7 0.052 1.1E-06 53.6 9.0 77 257-334 24-101 (505)
289 PHA02244 ATPase-like protein 95.7 0.093 2E-06 48.8 9.9 26 46-71 112-137 (383)
290 PRK14962 DNA polymerase III su 95.7 0.089 1.9E-06 51.3 10.4 18 55-72 38-55 (472)
291 TIGR02760 TraI_TIGR conjugativ 95.7 0.063 1.4E-06 61.3 10.5 58 37-94 1018-1084(1960)
292 PRK07003 DNA polymerase III su 95.7 0.05 1.1E-06 55.1 8.6 18 55-72 40-57 (830)
293 PRK14958 DNA polymerase III su 95.7 0.059 1.3E-06 53.1 9.1 18 55-72 40-57 (509)
294 TIGR01075 uvrD DNA helicase II 95.7 0.02 4.3E-07 59.4 6.1 63 37-101 3-72 (715)
295 COG4962 CpaF Flp pilus assembl 95.7 0.039 8.4E-07 50.2 7.1 57 35-91 154-213 (355)
296 PRK14088 dnaA chromosomal repl 95.7 0.14 3E-06 49.7 11.5 40 54-94 131-175 (440)
297 CHL00176 ftsH cell division pr 95.7 0.11 2.4E-06 52.6 11.1 18 54-71 217-234 (638)
298 PRK14873 primosome assembly pr 95.6 0.092 2E-06 53.4 10.5 90 244-334 172-265 (665)
299 PRK14949 DNA polymerase III su 95.6 0.15 3.3E-06 52.8 11.9 18 56-73 41-58 (944)
300 TIGR01243 CDC48 AAA family ATP 95.6 0.1 2.2E-06 54.4 10.9 21 53-73 487-507 (733)
301 PRK11773 uvrD DNA-dependent he 95.6 0.024 5.2E-07 58.8 6.3 63 37-101 8-77 (721)
302 PRK14960 DNA polymerase III su 95.6 0.085 1.8E-06 52.8 9.6 19 55-73 39-57 (702)
303 COG1444 Predicted P-loop ATPas 95.6 0.22 4.7E-06 50.6 12.5 77 20-97 197-280 (758)
304 TIGR02655 circ_KaiC circadian 95.5 0.04 8.7E-07 54.2 7.4 109 45-171 250-366 (484)
305 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.012 2.7E-07 51.9 3.5 51 53-104 21-74 (237)
306 KOG0733 Nuclear AAA ATPase (VC 95.5 0.27 5.9E-06 48.2 12.4 55 13-70 506-562 (802)
307 PRK11034 clpA ATP-dependent Cl 95.5 0.14 3E-06 52.9 11.3 19 53-71 207-225 (758)
308 PF05872 DUF853: Bacterial pro 95.5 0.069 1.5E-06 50.4 8.2 47 157-205 253-302 (502)
309 TIGR02639 ClpA ATP-dependent C 95.5 0.11 2.4E-06 53.9 10.7 17 54-70 204-220 (731)
310 PRK00771 signal recognition pa 95.5 0.71 1.5E-05 44.5 15.3 48 160-211 177-225 (437)
311 PRK13709 conjugal transfer nic 95.4 0.062 1.3E-06 60.0 9.0 57 38-94 967-1032(1747)
312 COG1223 Predicted ATPase (AAA+ 95.4 0.19 4.1E-06 43.9 10.0 40 53-93 151-190 (368)
313 cd01121 Sms Sms (bacterial rad 95.4 0.11 2.4E-06 48.9 9.6 49 53-102 82-133 (372)
314 PF01695 IstB_IS21: IstB-like 95.4 0.028 6.1E-07 47.1 5.1 42 52-94 46-90 (178)
315 PRK11054 helD DNA helicase IV; 95.4 0.057 1.2E-06 55.2 8.2 62 37-100 195-263 (684)
316 COG3267 ExeA Type II secretory 95.4 0.12 2.6E-06 45.0 8.8 78 13-92 12-92 (269)
317 PRK06067 flagellar accessory p 95.4 0.14 3E-06 45.2 9.7 51 53-104 25-78 (234)
318 PRK10416 signal recognition pa 95.4 1.1 2.4E-05 41.4 15.7 57 156-213 194-254 (318)
319 cd00984 DnaB_C DnaB helicase C 95.4 0.23 4.9E-06 44.0 11.1 43 52-94 12-61 (242)
320 KOG1133 Helicase of the DEAD s 95.3 0.023 4.9E-07 55.9 4.6 38 38-75 15-56 (821)
321 KOG2543 Origin recognition com 95.3 0.33 7.2E-06 44.8 11.6 140 39-206 10-161 (438)
322 TIGR00064 ftsY signal recognit 95.3 1.2 2.6E-05 40.1 15.4 52 157-212 153-211 (272)
323 COG1110 Reverse gyrase [DNA re 95.3 0.1 2.2E-06 53.9 9.2 92 243-334 110-211 (1187)
324 TIGR03600 phage_DnaB phage rep 95.3 0.26 5.6E-06 47.7 11.9 42 53-94 194-242 (421)
325 PRK12402 replication factor C 95.3 0.39 8.4E-06 44.9 12.9 17 55-71 38-54 (337)
326 TIGR00643 recG ATP-dependent D 95.2 0.046 1E-06 55.7 6.9 77 257-333 283-364 (630)
327 TIGR02880 cbbX_cfxQ probable R 95.2 0.21 4.5E-06 45.5 10.4 17 54-70 59-75 (284)
328 TIGR01243 CDC48 AAA family ATP 95.2 0.12 2.7E-06 53.7 10.1 19 52-70 211-229 (733)
329 PRK14086 dnaA chromosomal repl 95.2 0.22 4.8E-06 49.7 11.1 43 54-97 315-362 (617)
330 PRK14959 DNA polymerase III su 95.2 0.27 5.9E-06 49.3 11.7 19 55-73 40-58 (624)
331 PRK12726 flagellar biosynthesi 95.1 0.7 1.5E-05 43.3 13.5 120 53-209 206-333 (407)
332 PRK06645 DNA polymerase III su 95.1 0.22 4.7E-06 49.0 10.9 20 54-73 44-63 (507)
333 PRK14961 DNA polymerase III su 95.1 0.14 2.9E-06 48.5 9.3 17 56-72 41-57 (363)
334 TIGR01074 rep ATP-dependent DN 95.1 0.045 9.8E-07 56.4 6.5 60 39-100 2-68 (664)
335 PF13481 AAA_25: AAA domain; P 95.1 0.22 4.9E-06 42.2 9.9 113 52-174 31-157 (193)
336 PF03354 Terminase_1: Phage Te 95.1 0.26 5.6E-06 48.5 11.5 61 41-101 1-77 (477)
337 TIGR01242 26Sp45 26S proteasom 95.1 0.18 4E-06 47.7 10.1 20 53-72 156-175 (364)
338 cd01126 TraG_VirD4 The TraG/Tr 95.1 0.025 5.4E-07 54.0 4.2 55 55-109 1-56 (384)
339 PRK14952 DNA polymerase III su 95.0 0.15 3.2E-06 51.1 9.5 18 56-73 38-55 (584)
340 KOG0745 Putative ATP-dependent 95.0 0.043 9.4E-07 51.2 5.4 18 54-71 227-244 (564)
341 PRK06871 DNA polymerase III su 95.0 0.079 1.7E-06 48.8 7.2 33 39-71 3-42 (325)
342 COG1198 PriA Primosomal protei 95.0 0.085 1.8E-06 53.7 7.9 88 243-331 228-318 (730)
343 PRK07764 DNA polymerase III su 95.0 0.14 3E-06 53.5 9.6 18 56-73 40-57 (824)
344 PRK07994 DNA polymerase III su 95.0 0.16 3.5E-06 51.2 9.8 17 56-72 41-57 (647)
345 PRK08691 DNA polymerase III su 95.0 0.21 4.5E-06 50.5 10.4 18 55-72 40-57 (709)
346 PF05127 Helicase_RecD: Helica 95.0 0.033 7.3E-07 46.1 4.2 42 57-98 1-46 (177)
347 PRK14963 DNA polymerase III su 95.0 0.23 4.9E-06 49.0 10.6 16 56-71 39-54 (504)
348 cd00561 CobA_CobO_BtuR ATP:cor 94.9 0.18 3.9E-06 41.1 8.1 52 152-206 89-140 (159)
349 PRK08939 primosomal protein Dn 94.9 0.46 1E-05 43.6 11.7 41 53-94 156-199 (306)
350 COG0593 DnaA ATPase involved i 94.9 0.18 3.8E-06 47.7 9.1 47 158-206 175-221 (408)
351 PTZ00361 26 proteosome regulat 94.9 0.17 3.6E-06 48.8 9.1 19 53-71 217-235 (438)
352 PRK04328 hypothetical protein; 94.9 0.031 6.7E-07 49.8 3.9 50 53-103 23-75 (249)
353 TIGR02785 addA_Gpos recombinat 94.9 0.057 1.2E-06 59.3 6.7 61 38-100 1-67 (1232)
354 PRK06964 DNA polymerase III su 94.8 0.1 2.2E-06 48.5 7.3 33 39-71 2-39 (342)
355 cd03115 SRP The signal recogni 94.8 1.5 3.3E-05 36.4 13.9 30 56-85 3-35 (173)
356 TIGR00580 mfd transcription-re 94.8 0.08 1.7E-06 55.9 7.3 77 257-333 499-580 (926)
357 KOG0727 26S proteasome regulat 94.8 0.31 6.8E-06 42.3 9.4 53 149-201 239-302 (408)
358 PRK13833 conjugal transfer pro 94.8 0.079 1.7E-06 48.8 6.4 52 39-90 129-186 (323)
359 PRK06620 hypothetical protein; 94.7 0.12 2.6E-06 44.8 7.1 18 54-71 45-62 (214)
360 PF03796 DnaB_C: DnaB-like hel 94.7 0.38 8.3E-06 43.1 10.7 145 53-202 19-179 (259)
361 PRK10865 protein disaggregatio 94.7 0.26 5.7E-06 52.1 10.8 18 54-71 200-217 (857)
362 TIGR00708 cobA cob(I)alamin ad 94.7 0.19 4.1E-06 41.5 7.8 53 152-207 91-143 (173)
363 PRK14721 flhF flagellar biosyn 94.7 1.3 2.9E-05 42.3 14.5 57 156-216 267-324 (420)
364 PF13177 DNA_pol3_delta2: DNA 94.7 0.72 1.6E-05 38.0 11.3 47 157-209 101-147 (162)
365 CHL00195 ycf46 Ycf46; Provisio 94.6 0.19 4.1E-06 49.2 8.9 19 53-71 259-277 (489)
366 TIGR01425 SRP54_euk signal rec 94.6 1.4 3.1E-05 42.2 14.6 49 157-209 181-230 (429)
367 COG2812 DnaX DNA polymerase II 94.6 0.024 5.3E-07 55.1 2.8 42 156-204 117-158 (515)
368 KOG0298 DEAD box-containing he 94.6 0.055 1.2E-06 56.9 5.4 142 53-215 374-561 (1394)
369 TIGR01073 pcrA ATP-dependent D 94.6 0.07 1.5E-06 55.6 6.2 63 37-101 3-72 (726)
370 PRK05563 DNA polymerase III su 94.6 0.16 3.5E-06 50.8 8.5 18 55-72 40-57 (559)
371 PRK14951 DNA polymerase III su 94.6 0.18 4E-06 50.6 8.8 18 56-73 41-58 (618)
372 PF10593 Z1: Z1 domain; Inter 94.5 0.15 3.3E-06 44.8 7.4 91 282-377 110-205 (239)
373 KOG0701 dsRNA-specific nucleas 94.5 0.022 4.7E-07 62.1 2.5 94 260-353 294-399 (1606)
374 PRK14957 DNA polymerase III su 94.5 0.2 4.3E-06 49.7 8.9 17 56-72 41-57 (546)
375 COG0464 SpoVK ATPases of the A 94.5 0.44 9.6E-06 47.2 11.4 39 54-93 277-315 (494)
376 PRK14969 DNA polymerase III su 94.5 0.089 1.9E-06 52.2 6.4 18 55-72 40-57 (527)
377 PRK06904 replicative DNA helic 94.4 1.3 2.7E-05 43.5 14.1 33 53-85 221-257 (472)
378 PF02534 T4SS-DNA_transf: Type 94.4 0.04 8.7E-07 54.2 3.9 56 54-109 45-101 (469)
379 KOG0339 ATP-dependent RNA heli 94.4 0.52 1.1E-05 45.1 10.7 120 259-382 297-467 (731)
380 COG2255 RuvB Holliday junction 94.4 0.15 3.2E-06 45.2 6.7 19 54-72 53-71 (332)
381 PRK07133 DNA polymerase III su 94.3 0.18 3.8E-06 51.4 8.1 18 55-72 42-59 (725)
382 PRK10867 signal recognition pa 94.3 2 4.3E-05 41.5 14.8 47 56-102 103-156 (433)
383 PRK14955 DNA polymerase III su 94.3 0.27 5.8E-06 47.2 9.0 18 55-72 40-57 (397)
384 TIGR03346 chaperone_ClpB ATP-d 94.2 0.42 9E-06 50.7 11.1 18 54-71 195-212 (852)
385 PF01443 Viral_helicase1: Vira 94.2 0.072 1.6E-06 46.9 4.8 15 56-70 1-15 (234)
386 PRK07940 DNA polymerase III su 94.2 0.35 7.5E-06 46.1 9.5 48 156-209 115-162 (394)
387 PRK14723 flhF flagellar biosyn 94.1 1.1 2.3E-05 46.2 13.3 54 158-215 263-317 (767)
388 KOG0738 AAA+-type ATPase [Post 94.1 0.099 2.1E-06 48.2 5.4 58 13-70 181-262 (491)
389 KOG0731 AAA+-type ATPase conta 94.1 0.88 1.9E-05 46.4 12.5 61 15-78 308-369 (774)
390 KOG0728 26S proteasome regulat 94.1 0.78 1.7E-05 39.9 10.4 40 52-92 180-219 (404)
391 PRK13851 type IV secretion sys 94.1 0.093 2E-06 48.8 5.3 40 51-90 160-201 (344)
392 PRK06090 DNA polymerase III su 94.1 0.19 4.1E-06 46.2 7.2 34 38-71 3-43 (319)
393 KOG0652 26S proteasome regulat 94.1 0.44 9.6E-06 41.6 8.9 24 53-76 205-228 (424)
394 COG3973 Superfamily I DNA and 94.0 0.18 4E-06 49.2 7.2 55 53-107 226-289 (747)
395 PRK13897 type IV secretion sys 94.0 0.059 1.3E-06 54.0 4.2 56 54-109 159-215 (606)
396 KOG0741 AAA+-type ATPase [Post 94.0 0.24 5.1E-06 47.7 7.7 58 11-71 212-274 (744)
397 PRK05896 DNA polymerase III su 94.0 0.34 7.4E-06 48.3 9.2 18 55-72 40-57 (605)
398 KOG0733 Nuclear AAA ATPase (VC 94.0 1.2 2.6E-05 44.0 12.4 54 14-70 186-240 (802)
399 TIGR02782 TrbB_P P-type conjug 93.9 0.14 3.1E-06 46.8 6.2 52 39-90 117-174 (299)
400 PRK05748 replicative DNA helic 93.9 0.66 1.4E-05 45.3 11.2 33 53-85 203-239 (448)
401 KOG2170 ATPase of the AAA+ sup 93.9 0.52 1.1E-05 42.2 9.2 52 159-216 179-238 (344)
402 PHA03333 putative ATPase subun 93.9 0.63 1.4E-05 46.8 10.8 61 40-100 171-238 (752)
403 PRK00080 ruvB Holliday junctio 93.9 0.14 3.1E-06 47.7 6.3 18 54-71 52-69 (328)
404 PRK14948 DNA polymerase III su 93.9 0.4 8.7E-06 48.6 9.7 19 54-72 39-57 (620)
405 PRK13894 conjugal transfer ATP 93.8 0.11 2.4E-06 47.9 5.3 51 39-90 133-190 (319)
406 PRK10689 transcription-repair 93.8 0.17 3.6E-06 54.9 7.4 76 257-332 648-728 (1147)
407 PRK08840 replicative DNA helic 93.8 1.2 2.6E-05 43.5 12.5 33 53-85 217-253 (464)
408 KOG0742 AAA+-type ATPase [Post 93.8 0.34 7.4E-06 45.1 8.1 17 54-70 385-401 (630)
409 COG2909 MalT ATP-dependent tra 93.7 0.74 1.6E-05 47.1 11.1 41 160-205 131-172 (894)
410 PHA03368 DNA packaging termina 93.7 1.4 3.1E-05 44.2 12.8 76 22-101 227-307 (738)
411 COG2109 BtuR ATP:corrinoid ade 93.7 0.73 1.6E-05 38.3 9.1 55 151-208 115-169 (198)
412 PRK05636 replicative DNA helic 93.7 0.9 2E-05 44.8 11.6 41 55-95 267-314 (505)
413 PF06745 KaiC: KaiC; InterPro 93.6 0.078 1.7E-06 46.5 3.8 50 53-103 19-72 (226)
414 KOG0732 AAA+-type ATPase conta 93.6 0.26 5.7E-06 51.7 7.9 57 12-70 259-316 (1080)
415 PRK07993 DNA polymerase III su 93.6 0.18 3.9E-06 46.9 6.2 33 39-71 3-42 (334)
416 PRK04841 transcriptional regul 93.5 0.98 2.1E-05 48.6 12.7 32 53-85 32-63 (903)
417 TIGR03499 FlhF flagellar biosy 93.5 0.39 8.5E-06 43.6 8.2 18 54-71 195-212 (282)
418 TIGR02640 gas_vesic_GvpN gas v 93.5 0.15 3.3E-06 45.8 5.5 41 44-84 12-52 (262)
419 PF05729 NACHT: NACHT domain 93.4 0.5 1.1E-05 38.7 8.3 16 56-71 3-18 (166)
420 KOG0736 Peroxisome assembly fa 93.4 1.3 2.8E-05 44.9 12.0 55 13-70 667-722 (953)
421 TIGR00959 ffh signal recogniti 93.4 2.7 5.8E-05 40.5 14.0 31 55-85 101-135 (428)
422 PRK06995 flhF flagellar biosyn 93.4 7.1 0.00015 38.3 16.8 56 156-215 332-388 (484)
423 COG0552 FtsY Signal recognitio 93.3 2 4.3E-05 39.3 12.1 125 56-210 142-276 (340)
424 PHA02542 41 41 helicase; Provi 93.3 1.7 3.6E-05 42.6 12.6 40 55-94 192-237 (473)
425 KOG0734 AAA+-type ATPase conta 93.3 1.4 3E-05 42.8 11.4 64 146-209 384-453 (752)
426 PRK00440 rfc replication facto 93.2 1.9 4.1E-05 39.9 12.6 17 55-71 40-56 (319)
427 PRK13850 type IV secretion sys 93.1 0.12 2.5E-06 52.6 4.6 56 54-109 140-196 (670)
428 COG0470 HolB ATPase involved i 93.1 0.55 1.2E-05 43.6 8.9 40 157-202 108-147 (325)
429 PRK09111 DNA polymerase III su 93.1 0.66 1.4E-05 46.7 9.8 19 55-73 48-66 (598)
430 TIGR00767 rho transcription te 93.1 0.38 8.1E-06 45.4 7.5 20 52-71 167-186 (415)
431 PRK10733 hflB ATP-dependent me 93.1 0.68 1.5E-05 47.4 10.0 19 54-72 186-204 (644)
432 PRK13900 type IV secretion sys 93.1 0.14 3E-06 47.6 4.7 40 51-90 158-199 (332)
433 COG0465 HflB ATP-dependent Zn 93.1 1.2 2.5E-05 44.4 11.1 143 17-209 149-302 (596)
434 COG1197 Mfd Transcription-repa 93.1 0.35 7.5E-06 51.2 7.9 77 256-332 641-722 (1139)
435 TIGR00635 ruvB Holliday juncti 93.0 0.23 4.9E-06 45.8 6.1 18 54-71 31-48 (305)
436 COG1200 RecG RecG-like helicas 93.0 0.56 1.2E-05 46.8 8.8 78 256-333 309-391 (677)
437 COG2804 PulE Type II secretory 93.0 0.15 3.2E-06 49.0 4.8 32 39-70 242-275 (500)
438 PRK08760 replicative DNA helic 93.0 0.71 1.5E-05 45.3 9.6 33 54-86 230-266 (476)
439 PRK09165 replicative DNA helic 92.9 0.84 1.8E-05 45.1 10.1 18 54-71 218-235 (497)
440 KOG1131 RNA polymerase II tran 92.9 0.44 9.6E-06 45.7 7.5 65 34-98 12-87 (755)
441 PRK14965 DNA polymerase III su 92.8 0.6 1.3E-05 47.1 9.1 18 55-72 40-57 (576)
442 PRK08699 DNA polymerase III su 92.8 0.96 2.1E-05 41.9 9.8 32 40-71 3-39 (325)
443 KOG0737 AAA+-type ATPase [Post 92.8 0.51 1.1E-05 43.4 7.6 60 14-73 88-147 (386)
444 TIGR00678 holB DNA polymerase 92.8 1.8 3.9E-05 36.5 10.8 17 55-71 16-32 (188)
445 COG2805 PilT Tfp pilus assembl 92.7 0.6 1.3E-05 41.9 7.8 23 55-77 127-151 (353)
446 PRK08506 replicative DNA helic 92.7 2 4.4E-05 42.1 12.4 32 54-85 193-227 (472)
447 COG1219 ClpX ATP-dependent pro 92.7 0.069 1.5E-06 47.9 2.0 51 15-71 44-115 (408)
448 PRK14950 DNA polymerase III su 92.6 0.63 1.4E-05 47.1 9.0 18 55-72 40-57 (585)
449 PLN00020 ribulose bisphosphate 92.5 0.29 6.3E-06 45.5 5.8 30 54-83 149-178 (413)
450 COG2874 FlaH Predicted ATPases 92.5 2.2 4.8E-05 36.4 10.4 130 55-206 30-170 (235)
451 TIGR03345 VI_ClpV1 type VI sec 92.5 1.1 2.4E-05 47.4 10.8 29 43-71 192-226 (852)
452 PRK05595 replicative DNA helic 92.5 0.81 1.8E-05 44.6 9.3 33 54-86 202-238 (444)
453 PRK14953 DNA polymerase III su 92.5 0.69 1.5E-05 45.5 8.8 17 56-72 41-57 (486)
454 TIGR00416 sms DNA repair prote 92.4 1.1 2.4E-05 43.7 10.0 56 46-102 82-145 (454)
455 KOG0735 AAA+-type ATPase [Post 92.4 4.4 9.5E-05 41.0 13.8 56 15-72 664-720 (952)
456 PRK13822 conjugal transfer cou 92.4 0.19 4.1E-06 51.0 4.8 57 54-110 225-282 (641)
457 PRK08006 replicative DNA helic 92.2 3.1 6.8E-05 40.8 12.9 42 53-94 224-272 (471)
458 cd01130 VirB11-like_ATPase Typ 92.2 0.32 7E-06 41.1 5.5 33 38-70 9-42 (186)
459 cd01128 rho_factor Transcripti 92.1 0.53 1.2E-05 41.7 6.9 20 51-70 14-33 (249)
460 CHL00095 clpC Clp protease ATP 92.0 0.67 1.5E-05 49.0 8.6 18 54-71 201-218 (821)
461 PRK14701 reverse gyrase; Provi 92.0 0.55 1.2E-05 52.8 8.2 61 257-317 121-187 (1638)
462 PRK14954 DNA polymerase III su 92.0 1 2.2E-05 45.6 9.5 18 55-72 40-57 (620)
463 KOG0651 26S proteasome regulat 91.9 1.8 4E-05 39.0 9.7 38 54-92 167-204 (388)
464 PHA00350 putative assembly pro 91.8 0.85 1.9E-05 43.2 8.2 24 56-79 4-31 (399)
465 PRK07004 replicative DNA helic 91.8 1.4 3.1E-05 43.0 10.0 43 53-95 213-262 (460)
466 TIGR00665 DnaB replicative DNA 91.7 1.5 3.1E-05 42.8 10.1 41 53-93 195-242 (434)
467 cd01125 repA Hexameric Replica 91.7 3 6.6E-05 36.8 11.3 44 56-99 4-65 (239)
468 PRK09302 circadian clock prote 91.7 0.55 1.2E-05 46.7 7.3 51 53-104 273-326 (509)
469 PRK09376 rho transcription ter 91.7 0.78 1.7E-05 43.2 7.6 19 52-70 168-186 (416)
470 PF02572 CobA_CobO_BtuR: ATP:c 91.6 1.8 3.9E-05 35.8 9.0 52 152-206 90-141 (172)
471 PF00437 T2SE: Type II/IV secr 91.6 0.15 3.2E-06 46.1 2.9 39 52-90 126-167 (270)
472 TIGR02767 TraG-Ti Ti-type conj 91.6 0.27 5.9E-06 49.6 4.9 56 54-109 212-269 (623)
473 TIGR02397 dnaX_nterm DNA polym 91.6 1.8 4E-05 40.7 10.5 17 55-71 38-54 (355)
474 PRK09112 DNA polymerase III su 91.6 2.4 5.2E-05 39.8 10.9 17 55-71 47-63 (351)
475 KOG1807 Helicases [Replication 91.5 0.48 1E-05 47.6 6.3 65 36-100 376-449 (1025)
476 PRK09087 hypothetical protein; 91.4 1 2.2E-05 39.3 7.9 17 54-70 45-61 (226)
477 TIGR01547 phage_term_2 phage t 91.3 1.1 2.4E-05 43.0 8.7 45 55-99 3-54 (396)
478 TIGR03878 thermo_KaiC_2 KaiC d 91.3 0.57 1.2E-05 42.0 6.3 50 53-102 36-91 (259)
479 KOG0744 AAA+-type ATPase [Post 91.3 2.2 4.7E-05 38.8 9.6 15 54-68 178-192 (423)
480 KOG0730 AAA+-type ATPase [Post 91.2 1.5 3.1E-05 43.7 9.1 57 11-70 427-485 (693)
481 PRK06647 DNA polymerase III su 91.1 2.4 5.2E-05 42.6 11.0 18 55-72 40-57 (563)
482 PRK14971 DNA polymerase III su 91.1 1.4 3E-05 44.8 9.4 41 156-202 119-159 (614)
483 PRK08451 DNA polymerase III su 91.1 2.3 5E-05 42.1 10.6 16 56-71 39-54 (535)
484 TIGR03819 heli_sec_ATPase heli 91.0 0.4 8.6E-06 44.7 5.1 52 39-90 163-217 (340)
485 PRK06305 DNA polymerase III su 90.9 2.4 5.2E-05 41.3 10.5 18 55-72 41-58 (451)
486 COG0513 SrmB Superfamily II DN 90.8 0.87 1.9E-05 45.3 7.6 68 261-332 102-180 (513)
487 COG1435 Tdk Thymidine kinase [ 90.8 0.34 7.4E-06 40.5 3.9 33 56-88 7-42 (201)
488 cd00544 CobU Adenosylcobinamid 90.8 0.33 7.1E-06 40.2 3.9 43 56-98 2-44 (169)
489 PF14617 CMS1: U3-containing 9 90.8 0.75 1.6E-05 40.6 6.3 81 78-169 126-212 (252)
490 COG0542 clpA ATP-binding subun 90.4 0.93 2E-05 46.5 7.4 29 42-70 495-538 (786)
491 PF01637 Arch_ATPase: Archaeal 90.4 1.6 3.4E-05 38.0 8.3 43 160-203 120-165 (234)
492 TIGR02237 recomb_radB DNA repa 90.3 2.2 4.7E-05 36.7 8.9 35 53-87 12-49 (209)
493 PRK11331 5-methylcytosine-spec 90.2 0.39 8.4E-06 46.1 4.4 33 39-71 180-212 (459)
494 cd01129 PulE-GspE PulE/GspE Th 90.2 0.44 9.5E-06 42.8 4.5 37 30-70 59-97 (264)
495 TIGR03345 VI_ClpV1 type VI sec 90.1 2.7 5.8E-05 44.6 10.8 15 56-70 599-613 (852)
496 PF01745 IPT: Isopentenyl tran 90.1 0.29 6.3E-06 41.6 3.1 26 56-81 4-29 (233)
497 PRK06321 replicative DNA helic 90.1 3 6.5E-05 40.9 10.5 40 54-93 227-273 (472)
498 PF12775 AAA_7: P-loop contain 90.1 0.22 4.9E-06 44.8 2.6 27 46-72 25-52 (272)
499 COG4626 Phage terminase-like p 90.1 2.4 5.2E-05 41.5 9.5 63 38-100 61-140 (546)
500 TIGR03881 KaiC_arch_4 KaiC dom 89.8 0.6 1.3E-05 40.9 5.1 50 52-102 19-71 (229)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-62 Score=427.03 Aligned_cols=356 Identities=21% Similarity=0.253 Sum_probs=291.6
Q ss_pred cccccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC------CCeEEE
Q 014134 10 STSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLV 83 (430)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~------~~~~li 83 (430)
.......|.+++++|+++.+.++ .||.+||++|++++|.++.|+|+|..|.||||||.+|++|++++ .+.++|
T Consensus 56 ~~e~~~sf~dLgv~~~L~~ac~~-l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lV 134 (476)
T KOG0330|consen 56 TDESFKSFADLGVHPELLEACQE-LGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALV 134 (476)
T ss_pred hhhhhcchhhcCcCHHHHHHHHH-hCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEE
Confidence 34567889999999999999999 79999999999999999999999999999999999999999853 578999
Q ss_pred EcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHH---hhhcCCcc
Q 014134 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLN 160 (430)
Q Consensus 84 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~---~~~~~~~~ 160 (430)
++||||||.|+.+.+..+|....+......++........-....+.+ +|+||+++.+.+. ..+...++
T Consensus 135 LtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhi--------lVaTPGrL~dhl~~Tkgf~le~lk 206 (476)
T KOG0330|consen 135 LTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHI--------LVATPGRLWDHLENTKGFSLEQLK 206 (476)
T ss_pred ecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCE--------EEeCcHHHHHHHHhccCccHHHhH
Confidence 999999999999999998655444333332222222222223334334 8999999888765 34466688
Q ss_pred EEEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCC---ceEEEE
Q 014134 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP---NLFYEV 236 (430)
Q Consensus 161 ~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 236 (430)
++|+||||+++++. |.+.++. ++..+| .+|.+++|||++.++.+.. .....+|..+..+.... .+.+.+
T Consensus 207 ~LVlDEADrlLd~d--F~~~ld~---ILk~ip~erqt~LfsATMt~kv~kL~--rasl~~p~~v~~s~ky~tv~~lkQ~y 279 (476)
T KOG0330|consen 207 FLVLDEADRLLDMD--FEEELDY---ILKVIPRERQTFLFSATMTKKVRKLQ--RASLDNPVKVAVSSKYQTVDHLKQTY 279 (476)
T ss_pred HHhhchHHhhhhhh--hHHHHHH---HHHhcCccceEEEEEeecchhhHHHH--hhccCCCeEEeccchhcchHHhhhhe
Confidence 99999999999987 6655544 444455 7899999999999988744 55566666555432221 111111
Q ss_pred EecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEec
Q 014134 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (430)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (430)
. .-....|-..|..++++..+..+||||++...++.++-.|+..|+.+..+||.|+++.|...++.|++|...||||||
T Consensus 280 l-fv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TD 358 (476)
T KOG0330|consen 280 L-FVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTD 358 (476)
T ss_pred E-eccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecc
Confidence 1 112235556788888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCCC
Q 014134 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382 (430)
Q Consensus 317 ~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~ 382 (430)
+++||+|+|.+++|||||+|.+..+|+||+||++|+|..|.++++++..|.+.+.+|+..++.+-.
T Consensus 359 VaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~ 424 (476)
T KOG0330|consen 359 VASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLP 424 (476)
T ss_pred hhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999888877643
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-61 Score=447.45 Aligned_cols=357 Identities=23% Similarity=0.328 Sum_probs=291.1
Q ss_pred cccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC------------CCeE
Q 014134 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIV 81 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~------------~~~~ 81 (430)
...|..++++++....|+. .||+.|+|+|.++||.++.|+|++..|.||||||++|++|++.+ ++++
T Consensus 90 ~~~f~~~~ls~~~~~~lk~-~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~v 168 (519)
T KOG0331|consen 90 SAAFQELGLSEELMKALKE-QGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIV 168 (519)
T ss_pred chhhhcccccHHHHHHHHh-cCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeE
Confidence 3478889999999999998 69999999999999999999999999999999999999998631 6789
Q ss_pred EEEcchHHHHHHHHHHHHHcCccee----EeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhh--
Q 014134 82 LVVSPLIALMENQVIGLKEKGIAGE----FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS-- 155 (430)
Q Consensus 82 lil~Pt~~L~~q~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~-- 155 (430)
|||+||||||.|+.+.+.+++.... ...++....... ......+++ +|+||+++.++++...
T Consensus 169 LVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~------~~l~~gvdi------viaTPGRl~d~le~g~~~ 236 (519)
T KOG0331|consen 169 LVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQL------RDLERGVDV------VIATPGRLIDLLEEGSLN 236 (519)
T ss_pred EEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHH------HHHhcCCcE------EEeCChHHHHHHHcCCcc
Confidence 9999999999999999999754433 233333322221 111222333 9999999999987554
Q ss_pred cCCccEEEEecCccccccCCCcHHHHHHHHHHHhhC-C-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCC-----
Q 014134 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-P-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN----- 228 (430)
Q Consensus 156 ~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~----- 228 (430)
+..+.++|+||||+|+++| |++. ++.+.... + ..|.+++|||++..+......++. ++..+.....
T Consensus 237 l~~v~ylVLDEADrMldmG--Fe~q---I~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~--~~~~i~ig~~~~~~a 309 (519)
T KOG0331|consen 237 LSRVTYLVLDEADRMLDMG--FEPQ---IRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLN--NPIQINVGNKKELKA 309 (519)
T ss_pred ccceeEEEeccHHhhhccc--cHHH---HHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhc--CceEEEecchhhhhh
Confidence 5689999999999999999 6644 45555555 2 457999999999999887777776 5554443322
Q ss_pred CCceEEEEEecCcchhHHHHHHHHHHhc---CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhh
Q 014134 229 RPNLFYEVRYKDLLDDAYADLCSVLKAN---GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 305 (430)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~ 305 (430)
..++.+.+...+ ...+...+..++... +++|+||||+|++.|++++..|+..++++..+||+.++.+|+.+++.|+
T Consensus 310 ~~~i~qive~~~-~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~Fr 388 (519)
T KOG0331|consen 310 NHNIRQIVEVCD-ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFR 388 (519)
T ss_pred hcchhhhhhhcC-HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcc
Confidence 223333333333 445555555555543 5779999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCCCCch
Q 014134 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385 (430)
Q Consensus 306 ~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (430)
+|+..|||||++++||+|+|+|++||+||+|.+.++|+||+||+||+|+.|.+++|++..+......+.+.+......++
T Consensus 389 eG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~ 468 (519)
T KOG0331|consen 389 EGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVP 468 (519)
T ss_pred cCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888777777
Q ss_pred hhhHHH
Q 014134 386 STRERW 391 (430)
Q Consensus 386 ~~~~~~ 391 (430)
+.+...
T Consensus 469 ~~l~~~ 474 (519)
T KOG0331|consen 469 PDLLEY 474 (519)
T ss_pred hHHHHH
Confidence 665544
No 3
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-60 Score=425.22 Aligned_cols=384 Identities=20% Similarity=0.269 Sum_probs=298.2
Q ss_pred CChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC---------C--CeEEEEcchH
Q 014134 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------P--GIVLVVSPLI 88 (430)
Q Consensus 20 ~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~---------~--~~~lil~Pt~ 88 (430)
.++++++...+.+ +||..+||.|..++|.+++++|+++.|+||||||+||++|+++. . ..+||++|||
T Consensus 11 ~~L~~~l~~~l~~-~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTR 89 (567)
T KOG0345|consen 11 PPLSPWLLEALDE-SGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTR 89 (567)
T ss_pred CCccHHHHHHHHh-cCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcH
Confidence 4577999999998 79999999999999999999999999999999999999999842 1 3689999999
Q ss_pred HHHHHHHHHHHHcCc-----ceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh----hhcCCc
Q 014134 89 ALMENQVIGLKEKGI-----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI----HSRGLL 159 (430)
Q Consensus 89 ~L~~q~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~----~~~~~~ 159 (430)
+|+.|+.+....+.. ....+.++...... .........++ +|+|||++.+++.. .+...+
T Consensus 90 ELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~D---i~~fkee~~nI--------lVgTPGRL~di~~~~~~~l~~rsL 158 (567)
T KOG0345|consen 90 ELARQIREVAQPFLEHLPNLNCELLVGGRSVEED---IKTFKEEGPNI--------LVGTPGRLLDILQREAEKLSFRSL 158 (567)
T ss_pred HHHHHHHHHHHHHHHhhhccceEEEecCccHHHH---HHHHHHhCCcE--------EEeCchhHHHHHhchhhhcccccc
Confidence 999999998877533 35556655433322 22333333334 99999999999775 455679
Q ss_pred cEEEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCC----CceEE
Q 014134 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR----PNLFY 234 (430)
Q Consensus 160 ~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 234 (430)
+++|+||||+++++|+. ..+..++..+| +++.-+||||....+.. ....++.+++.+...... +.-..
T Consensus 159 e~LVLDEADrLldmgFe-----~~~n~ILs~LPKQRRTGLFSATq~~~v~d--L~raGLRNpv~V~V~~k~~~~tPS~L~ 231 (567)
T KOG0345|consen 159 EILVLDEADRLLDMGFE-----ASVNTILSFLPKQRRTGLFSATQTQEVED--LARAGLRNPVRVSVKEKSKSATPSSLA 231 (567)
T ss_pred ceEEecchHhHhcccHH-----HHHHHHHHhcccccccccccchhhHHHHH--HHHhhccCceeeeecccccccCchhhc
Confidence 99999999999999954 66777888888 67799999999998877 455577888776544332 22223
Q ss_pred EEEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcC--CCcceeecCCCCHHHHHHHHHHhhcCCceEE
Q 014134 235 EVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (430)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vL 312 (430)
.....-....+...+.+++.....+++|||++|+..++..+..|... +.++..+||+|.+..|..+++.|++....+|
T Consensus 232 ~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl 311 (567)
T KOG0345|consen 232 LEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVL 311 (567)
T ss_pred ceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceE
Confidence 33333345789999999999988999999999999999999998775 5678999999999999999999999888899
Q ss_pred EEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCCCCchhhhHHHH
Q 014134 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERWL 392 (430)
Q Consensus 313 v~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (430)
+|||+++||+|+|++++||++|+|.+++.|+||+||++|.|+.|.+++|+.+.+..+.+-+--..++.............
T Consensus 312 ~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e~~~~~ 391 (567)
T KOG0345|consen 312 FCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDTEKASLS 391 (567)
T ss_pred EeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcccccchh
Confidence 99999999999999999999999999999999999999999999999999997766665553332232221111111100
Q ss_pred HHhhhhccccccceeecCcceeeeeccccccCCCcccC
Q 014134 393 ITVKVLDVAGKRFSRVLGNRYLYHYVKTHAMPANIQTY 430 (430)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 430 (430)
+.+....-....+-.|+. +..||.||+|+|
T Consensus 392 -------~~~~ir~~~~~DR~~~dk-G~kAFVS~VraY 421 (567)
T KOG0345|consen 392 -------VYQDIRSIISKDRAVLDK-GLKAFVSHVRAY 421 (567)
T ss_pred -------HHHHHHHHhcccHHHHhh-hHHHHHHHHHHH
Confidence 111111111222233444 889999999988
No 4
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-59 Score=393.34 Aligned_cols=355 Identities=19% Similarity=0.291 Sum_probs=297.5
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc------CCCeEEEEcc
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSP 86 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~------~~~~~lil~P 86 (430)
....|+++++.+++++.+.. +||++|+.+|+.|++.+++|+|++++|..|+|||.+|.+.+++ +..+++|++|
T Consensus 25 v~~~F~~Mgl~edlLrgiY~-yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsP 103 (400)
T KOG0328|consen 25 VIPTFDDMGLKEDLLRGIYA-YGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSP 103 (400)
T ss_pred cccchhhcCchHHHHHHHHH-hccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecC
Confidence 46678999999999999998 9999999999999999999999999999999999999888774 3578999999
Q ss_pred hHHHHHHHHHHHHHcCc----ceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhc--CCcc
Q 014134 87 LIALMENQVIGLKEKGI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR--GLLN 160 (430)
Q Consensus 87 t~~L~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~--~~~~ 160 (430)
||+|+.|+.+.+..+|- .+....++.+.+.. +.... .+.+.+.+||++..++.+...+ ..+.
T Consensus 104 TRELa~Qi~~vi~alg~~mnvq~hacigg~n~ged------ikkld------~G~hvVsGtPGrv~dmikr~~L~tr~vk 171 (400)
T KOG0328|consen 104 TRELAVQIQKVILALGDYMNVQCHACIGGKNLGED------IKKLD------YGQHVVSGTPGRVLDMIKRRSLRTRAVK 171 (400)
T ss_pred hHHHHHHHHHHHHHhcccccceEEEEecCCccchh------hhhhc------ccceEeeCCCchHHHHHHhcccccccee
Confidence 99999999999988753 33333333322211 11111 2233389999999999776553 4589
Q ss_pred EEEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEec-cCCCCceEEEEEe
Q 014134 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRY 238 (430)
Q Consensus 161 ~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 238 (430)
++|+||+|.+++.|+ . .++..+.+++| ++|++++|||++.++.+....++..+-.+.+.. +.....+...+..
T Consensus 172 mlVLDEaDemL~kgf--k---~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ 246 (400)
T KOG0328|consen 172 MLVLDEADEMLNKGF--K---EQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVA 246 (400)
T ss_pred EEEeccHHHHHHhhH--H---HHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheee
Confidence 999999999999884 3 66667777777 899999999999999886666554333333333 3334457777777
Q ss_pred cCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccc
Q 014134 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (430)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 318 (430)
.+..++|.+.|+++.....-.+.+|||||++.++.+.+.+++.++.+...||+|++++|+++++.|+.|+.+||++||+-
T Consensus 247 ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVw 326 (400)
T KOG0328|consen 247 VEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVW 326 (400)
T ss_pred echhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechh
Confidence 77778899999999988777899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCCCCch
Q 014134 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385 (430)
Q Consensus 319 ~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (430)
+||+|+|.+++|||||+|.+.+.|+||+||.||.|+.|.++-|+..+|.+.++.+.+.......+.+
T Consensus 327 aRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp 393 (400)
T KOG0328|consen 327 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMP 393 (400)
T ss_pred hccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhccccc
Confidence 9999999999999999999999999999999999999999999999999999999888766554433
No 5
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.6e-59 Score=420.05 Aligned_cols=390 Identities=19% Similarity=0.237 Sum_probs=306.8
Q ss_pred ccccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc----------CCCe
Q 014134 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----------KPGI 80 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~----------~~~~ 80 (430)
......|+...+++...+++++ +||.+||++|+..++.++.|+|+++.|.||||||++|++|+++ .+..
T Consensus 78 ~~~~~~f~~~~LS~~t~kAi~~-~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~ 156 (543)
T KOG0342|consen 78 ITTTFRFEEGSLSPLTLKAIKE-MGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTG 156 (543)
T ss_pred hhhhhHhhccccCHHHHHHHHh-cCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCee
Confidence 3346778899999999999999 8999999999999999999999999999999999999999874 2567
Q ss_pred EEEEcchHHHHHHHHHHHHHc-----CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhh
Q 014134 81 VLVVSPLIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS 155 (430)
Q Consensus 81 ~lil~Pt~~L~~q~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~ 155 (430)
++|+||||+||.|++.+++++ +..+....++......... +.. .+.++|+||+++.+.+....
T Consensus 157 vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~k---l~k---------~~niliATPGRLlDHlqNt~ 224 (543)
T KOG0342|consen 157 VLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADK---LVK---------GCNILIATPGRLLDHLQNTS 224 (543)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHH---hhc---------cccEEEeCCchHHhHhhcCC
Confidence 999999999999999998874 3334444444332222111 111 22339999999888765332
Q ss_pred ---cCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCC--
Q 014134 156 ---RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR-- 229 (430)
Q Consensus 156 ---~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 229 (430)
..+++++|+||||++++.| |+ ..+..+....| ++|..+||||.++++.+.....+.- ++..+......
T Consensus 225 ~f~~r~~k~lvlDEADrlLd~G--F~---~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~-d~~~v~~~d~~~~ 298 (543)
T KOG0342|consen 225 GFLFRNLKCLVLDEADRLLDIG--FE---EDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKR-DPVFVNVDDGGER 298 (543)
T ss_pred cchhhccceeEeecchhhhhcc--cH---HHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcC-CceEeecCCCCCc
Confidence 3446899999999999999 55 44555556556 7889999999999997755555544 67777653322
Q ss_pred ---CceEEEEEecCcchhHHHHHHHHHHhcCC-ceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhh
Q 014134 230 ---PNLFYEVRYKDLLDDAYADLCSVLKANGD-TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 305 (430)
Q Consensus 230 ---~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~ 305 (430)
..+.+.+.... ...++-.+..+++++.. .++||||+|...+..+++.|+...++|..+||+.++..|..+...|+
T Consensus 299 ~The~l~Qgyvv~~-~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~ 377 (543)
T KOG0342|consen 299 ETHERLEQGYVVAP-SDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFC 377 (543)
T ss_pred chhhcccceEEecc-ccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHh
Confidence 12223233333 23447888888888755 89999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCCCCch
Q 014134 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385 (430)
Q Consensus 306 ~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (430)
+.+.-||||||+++||+|+|+|++||+|++|.++++|+||+||+||.|+.|.++.++.+.+...++.+.+-... +.+.+
T Consensus 378 kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~lpl~-~~e~~ 456 (543)
T KOG0342|consen 378 KAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKKLPLE-EFEFP 456 (543)
T ss_pred hcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhhCCCc-ccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998888732222 22221
Q ss_pred hhhHHHHHHhhhhccccccceeecCcceeeeeccccccCCCcccC
Q 014134 386 STRERWLITVKVLDVAGKRFSRVLGNRYLYHYVKTHAMPANIQTY 430 (430)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 430 (430)
+.. ...++...+.+....|.+...+.+||.||++.|
T Consensus 457 ~~~---------~~~v~~~~~~li~~~y~~~~aak~ay~syl~~y 492 (543)
T KOG0342|consen 457 PLK---------PEDVQSQLEKLISKNYSLKEAAKEAYKSYLGAY 492 (543)
T ss_pred CCC---------HHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhc
Confidence 111 111234445556677888888999999999877
No 6
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.2e-56 Score=434.57 Aligned_cols=344 Identities=49% Similarity=0.858 Sum_probs=297.9
Q ss_pred HHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCcceeEe
Q 014134 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (430)
Q Consensus 29 ~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 108 (430)
.|++.|||..|+|+|.++++.+++|+|+++++|||+|||++|.+|++.....+||++|+++|+.|+++.+..+|+.....
T Consensus 2 ~l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l 81 (470)
T TIGR00614 2 ILKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKASGIPATFL 81 (470)
T ss_pred hhHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEE
Confidence 36777999999999999999999999999999999999999999999888899999999999999999999999888877
Q ss_pred CCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHH
Q 014134 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~ 188 (430)
.+.............+.. ...++++.+|+.+.++..+...+. ....++++|+||||.+.+||++|++.+..+..+.
T Consensus 82 ~~~~~~~~~~~i~~~~~~--~~~~il~~TPe~l~~~~~~~~~l~--~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 157 (470)
T TIGR00614 82 NSSQSKEQQKNVLTDLKD--GKIKLLYVTPEKCSASNRLLQTLE--ERKGITLIAVDEAHCISQWGHDFRPDYKALGSLK 157 (470)
T ss_pred eCCCCHHHHHHHHHHHhc--CCCCEEEECHHHHcCchhHHHHHH--hcCCcCEEEEeCCcccCccccccHHHHHHHHHHH
Confidence 776665554445444433 335665555555544432222221 4567999999999999999999999999999999
Q ss_pred hhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCcchhHHHHHHHHHH-hcCCceEEEEeCc
Q 014134 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK-ANGDTCAIVYCLE 267 (430)
Q Consensus 189 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~iVf~~s 267 (430)
..+|+.+++++|||+++.+..++...+....+.++..++.++++.+.+.... ......+..++. ..+++.+||||+|
T Consensus 158 ~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~--~~~~~~l~~~l~~~~~~~~~IIF~~s 235 (470)
T TIGR00614 158 QKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKT--PKILEDLLRFIRKEFKGKSGIIYCPS 235 (470)
T ss_pred HHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCC--ccHHHHHHHHHHHhcCCCceEEEECc
Confidence 9999999999999999999999999998888888888888888877776554 245566777776 4456677999999
Q ss_pred cccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhc
Q 014134 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESG 347 (430)
Q Consensus 268 ~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~G 347 (430)
++.++.+++.|++.|+.+..+||+|++++|..+++.|++|+++|||||+++++|+|+|++++||++++|.|.+.|+||+|
T Consensus 236 ~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~G 315 (470)
T TIGR00614 236 RKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESG 315 (470)
T ss_pred HHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCceEEEeeCccchHHHHHHHHhcc
Q 014134 348 RAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (430)
Q Consensus 348 R~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~ 378 (430)
|+||.|..|.|++|+.+.|...++.++....
T Consensus 316 RaGR~G~~~~~~~~~~~~d~~~~~~~~~~~~ 346 (470)
T TIGR00614 316 RAGRDGLPSECHLFYAPADINRLRRLLMEEP 346 (470)
T ss_pred CcCCCCCCceEEEEechhHHHHHHHHHhcCC
Confidence 9999999999999999999998888877654
No 7
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.3e-58 Score=442.75 Aligned_cols=347 Identities=22% Similarity=0.315 Sum_probs=288.8
Q ss_pred cccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcCC-------Ce-EEEEc
Q 014134 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP-------GI-VLVVS 85 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~~-------~~-~lil~ 85 (430)
...|+.+++++.+.+.+.+ .||..|||+|.+++|.++.|+|++++|+||||||++|++|++++- .. +||++
T Consensus 28 ~~~F~~l~l~~~ll~~l~~-~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~ 106 (513)
T COG0513 28 PPEFASLGLSPELLQALKD-LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILA 106 (513)
T ss_pred cCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEEC
Confidence 3678999999999999999 899999999999999999999999999999999999999998531 12 99999
Q ss_pred chHHHHHHHHHHHHHcCcc-----eeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh--hcCC
Q 014134 86 PLIALMENQVIGLKEKGIA-----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SRGL 158 (430)
Q Consensus 86 Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~--~~~~ 158 (430)
|||+||.|+.+.+..++.. .....++....... ..+.. ..++ +|+||+++.++.... .+..
T Consensus 107 PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~---~~l~~-~~~i--------vVaTPGRllD~i~~~~l~l~~ 174 (513)
T COG0513 107 PTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI---EALKR-GVDI--------VVATPGRLLDLIKRGKLDLSG 174 (513)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHH---HHHhc-CCCE--------EEECccHHHHHHHcCCcchhh
Confidence 9999999999999886433 23334443332222 22222 1233 999999999987654 6777
Q ss_pred ccEEEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEecc--C---CCCce
Q 014134 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS--F---NRPNL 232 (430)
Q Consensus 159 ~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~ 232 (430)
++++|+||||+++++| |. ..+..+....| +.|+++||||++..+......++. +|..+... . ....+
T Consensus 175 v~~lVlDEADrmLd~G--f~---~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~--~p~~i~v~~~~~~~~~~~i 247 (513)
T COG0513 175 VETLVLDEADRMLDMG--FI---DDIEKILKALPPDRQTLLFSATMPDDIRELARRYLN--DPVEIEVSVEKLERTLKKI 247 (513)
T ss_pred cCEEEeccHhhhhcCC--CH---HHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcc--CCcEEEEccccccccccCc
Confidence 9999999999999998 55 55566666666 689999999999976665555554 55444333 1 33555
Q ss_pred EEEEEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEE
Q 014134 233 FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (430)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vL 312 (430)
.+.+........+...|..++......++||||+|+..++.++..|...|+.+..+||++++++|..+++.|++|+.+||
T Consensus 248 ~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vL 327 (513)
T COG0513 248 KQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVL 327 (513)
T ss_pred eEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEE
Confidence 56565555445699999999998777789999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCcc-chHHHHHHHHhccCC
Q 014134 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSKNQSK 380 (430)
Q Consensus 313 v~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~-~~~~~~~~~~~~~~~ 380 (430)
||||+++||+|+|++++|||||+|.+++.|+||+||+||+|..|.+++|+.+. |...+..+.+.....
T Consensus 328 VaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 328 VATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred EEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999986 888888888776544
No 8
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.7e-57 Score=436.55 Aligned_cols=346 Identities=19% Similarity=0.245 Sum_probs=276.5
Q ss_pred cccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc-------------CCCe
Q 014134 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-------------KPGI 80 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~-------------~~~~ 80 (430)
...|+.+++++.+.+.|.. +||..|+++|.+++|.+++|+|++++||||||||++|++|+++ .+++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEK-KGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 3578899999999999998 8999999999999999999999999999999999999999863 1368
Q ss_pred EEEEcchHHHHHHHHHHHHHc----CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHH--hh
Q 014134 81 VLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IH 154 (430)
Q Consensus 81 ~lil~Pt~~L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~--~~ 154 (430)
+||++||++||.|+++.+..+ +.......++........ .+ ... +++ +|+||+++.++.. ..
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~l-~~~--~~I------lV~TP~~l~~~l~~~~~ 153 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK---VL-ESG--VDI------LIGTTGRLIDYAKQNHI 153 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---Hh-cCC--CCE------EEECHHHHHHHHHcCCc
Confidence 999999999999999888765 344444443332221111 11 111 222 9999999888764 34
Q ss_pred hcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCC---CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEecc--C-C
Q 014134 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS--F-N 228 (430)
Q Consensus 155 ~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~-~ 228 (430)
.+..++++|+||||++.++| +. ..+..+....| ..+.+++|||++..........+. ++..+... . .
T Consensus 154 ~l~~v~~lViDEad~l~~~~--f~---~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~--~p~~i~v~~~~~~ 226 (423)
T PRK04837 154 NLGAIQVVVLDEADRMFDLG--FI---KDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMN--NPEYVEVEPEQKT 226 (423)
T ss_pred ccccccEEEEecHHHHhhcc--cH---HHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCC--CCEEEEEcCCCcC
Confidence 56779999999999999987 44 33444555555 345799999999887765555543 33333221 1 1
Q ss_pred CCceEEEEEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCC
Q 014134 229 RPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (430)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 308 (430)
...+..... ......+...+..++......++||||+++..|+.+++.|.+.|+.+..+||++++++|..+++.|++|+
T Consensus 227 ~~~i~~~~~-~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~ 305 (423)
T PRK04837 227 GHRIKEELF-YPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGD 305 (423)
T ss_pred CCceeEEEE-eCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCC
Confidence 122322222 2334567788888888767789999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCC
Q 014134 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (430)
Q Consensus 309 ~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~ 380 (430)
++|||||+++++|+|+|++++||+||+|.+.++|+||+||+||.|+.|.+++|+.+++...+..+.+.....
T Consensus 306 ~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 306 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHS 377 (423)
T ss_pred CcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999999988888887665544
No 9
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.5e-56 Score=447.47 Aligned_cols=358 Identities=42% Similarity=0.732 Sum_probs=310.3
Q ss_pred CCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHHHH
Q 014134 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIG 97 (430)
Q Consensus 18 ~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~~~ 97 (430)
..++....+...++..||+..|+|+|.++|+.++.|+|+++++|||+|||++|.+|++.....+|||+|+++|+.++...
T Consensus 440 ~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqDQV~~ 519 (1195)
T PLN03137 440 RNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMN 519 (1195)
T ss_pred cCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHH-HhhhcCCccEEEEecCccccccCCC
Q 014134 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVAIDEAHCISSWGHD 176 (430)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~-~~~~~~~~~~lViDE~h~~~~~~~~ 176 (430)
+...++....+.+....................+++++.+|+.+.+...+.... .......+.+|||||||.+.+||++
T Consensus 520 L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhD 599 (1195)
T PLN03137 520 LLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHD 599 (1195)
T ss_pred HHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccc
Confidence 888888888777777666555555555443445677666666555443322222 2233455889999999999999999
Q ss_pred cHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCcchhHHHHHHHHHHhc
Q 014134 177 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256 (430)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 256 (430)
|++.+..+..+...+|+.+++++|||.++.+..++...+....+.++..++.++++.+.+.... ......+..++...
T Consensus 600 FRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~--kk~le~L~~~I~~~ 677 (1195)
T PLN03137 600 FRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKT--KKCLEDIDKFIKEN 677 (1195)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccc--hhHHHHHHHHHHhc
Confidence 9999999988899999999999999999999999999999888999999999999888776543 23345666776643
Q ss_pred -CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecC
Q 014134 257 -GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI 335 (430)
Q Consensus 257 -~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~ 335 (430)
.+.+.||||++++.|+.+++.|...|+.+..+||+|++++|..+++.|.+|+++|||||+++++|||+|+|++||||++
T Consensus 678 ~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydl 757 (1195)
T PLN03137 678 HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSL 757 (1195)
T ss_pred ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCC
Confidence 3567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhc
Q 014134 336 PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (430)
Q Consensus 336 p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~ 377 (430)
|.|++.|+||+||+||.|..|.|++|+...|...++.++...
T Consensus 758 PkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~~~ 799 (1195)
T PLN03137 758 PKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQG 799 (1195)
T ss_pred CCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999998888887654
No 10
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.1e-56 Score=439.62 Aligned_cols=359 Identities=21% Similarity=0.281 Sum_probs=280.7
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC-----------CCeE
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIV 81 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~-----------~~~~ 81 (430)
+...|+.+++++.+.+.|.+ +||.+|+++|.++||.+++|+|++++||||||||++|++|++.+ ++.+
T Consensus 128 p~~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~ 206 (545)
T PTZ00110 128 PVVSFEYTSFPDYILKSLKN-AGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIV 206 (545)
T ss_pred ccCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEE
Confidence 44577788999999999998 89999999999999999999999999999999999999998631 5679
Q ss_pred EEEcchHHHHHHHHHHHHHcCcc----eeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh--hh
Q 014134 82 LVVSPLIALMENQVIGLKEKGIA----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HS 155 (430)
Q Consensus 82 lil~Pt~~L~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~--~~ 155 (430)
|||+||++||.|+.+.+..++.. .....++...... ...+. .. ++ ++|+||+++.+++.. ..
T Consensus 207 LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q---~~~l~-~~--~~------IlVaTPgrL~d~l~~~~~~ 274 (545)
T PTZ00110 207 LVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQ---IYALR-RG--VE------ILIACPGRLIDFLESNVTN 274 (545)
T ss_pred EEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHH---HHHHH-cC--CC------EEEECHHHHHHHHHcCCCC
Confidence 99999999999999999987533 2222222222111 11111 11 22 389999998887653 34
Q ss_pred cCCccEEEEecCccccccCCCcHHHHHHHHHHHhhC-CCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccC----CCC
Q 014134 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF----NRP 230 (430)
Q Consensus 156 ~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 230 (430)
+..+++||+||||++++++ |...+..+ .... ++.|++++|||++..........+ ...+..+.... ...
T Consensus 275 l~~v~~lViDEAd~mld~g--f~~~i~~i---l~~~~~~~q~l~~SAT~p~~v~~l~~~l~-~~~~v~i~vg~~~l~~~~ 348 (545)
T PTZ00110 275 LRRVTYLVLDEADRMLDMG--FEPQIRKI---VSQIRPDRQTLMWSATWPKEVQSLARDLC-KEEPVHVNVGSLDLTACH 348 (545)
T ss_pred hhhCcEEEeehHHhhhhcc--hHHHHHHH---HHhCCCCCeEEEEEeCCCHHHHHHHHHHh-ccCCEEEEECCCccccCC
Confidence 6678999999999999988 66554444 3333 578999999999987655433333 33344333211 112
Q ss_pred ceEEEEEecCcchhHHHHHHHHHHhc--CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCC
Q 014134 231 NLFYEVRYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (430)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 308 (430)
.+...+.... ...+...+..++... .+.++||||++++.|+.++..|...++.+..+||++++.+|..+++.|++|+
T Consensus 349 ~i~q~~~~~~-~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~ 427 (545)
T PTZ00110 349 NIKQEVFVVE-EHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGK 427 (545)
T ss_pred CeeEEEEEEe-chhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCC
Confidence 3333332222 245566666666553 5679999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCCCCchhhh
Q 014134 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388 (430)
Q Consensus 309 ~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (430)
.+|||||+++++|+|+|++++||+||+|.+.++|+||+||+||.|..|.+++|+++++......+.+.+......+++.+
T Consensus 428 ~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l 507 (545)
T PTZ00110 428 SPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPEL 507 (545)
T ss_pred CcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888877776666554
Q ss_pred HHH
Q 014134 389 ERW 391 (430)
Q Consensus 389 ~~~ 391 (430)
.++
T Consensus 508 ~~~ 510 (545)
T PTZ00110 508 EKL 510 (545)
T ss_pred HHH
Confidence 443
No 11
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.4e-56 Score=438.43 Aligned_cols=347 Identities=17% Similarity=0.211 Sum_probs=278.3
Q ss_pred ccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC-------------CCeE
Q 014134 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------------PGIV 81 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~-------------~~~~ 81 (430)
..|+.+++++.+++.|.+ +||..|+++|.++||.+++|+|++++||||||||++|++|++++ ..++
T Consensus 9 ~~f~~l~l~~~l~~~L~~-~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 9 LTFSSFDLHPALLAGLES-AGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 368899999999999998 89999999999999999999999999999999999999998742 3689
Q ss_pred EEEcchHHHHHHHHHHHHHcCc----ceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh---h
Q 014134 82 LVVSPLIALMENQVIGLKEKGI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI---H 154 (430)
Q Consensus 82 lil~Pt~~L~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~---~ 154 (430)
||++||++|+.|+++.+..++. ......+........... ... .++ +|+||+++.++... .
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l----~~~--~dI------iV~TP~rL~~~l~~~~~~ 155 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELL----QQG--VDV------IIATPGRLIDYVKQHKVV 155 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHH----hCC--CCE------EEECHHHHHHHHHhcccc
Confidence 9999999999999999888643 333344433322221111 111 222 99999988877543 3
Q ss_pred hcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCC---CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccC-CCC
Q 014134 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF-NRP 230 (430)
Q Consensus 155 ~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 230 (430)
.+..+++||+||||++.+++ |. ..+..+...++ ..|+++||||++..+.......+.......+.... ...
T Consensus 156 ~l~~v~~lViDEAh~lld~g--f~---~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~ 230 (572)
T PRK04537 156 SLHACEICVLDEADRMFDLG--FI---KDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAA 230 (572)
T ss_pred chhheeeeEecCHHHHhhcc--hH---HHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccccccc
Confidence 45668899999999999877 44 34445555555 57899999999998777666555433323222221 222
Q ss_pred ceEEEEEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCce
Q 014134 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (430)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~ 310 (430)
.+...+. ......+...+..++....+.++||||+++..++.+++.|.+.++.+..+||+|++.+|..+++.|++|+++
T Consensus 231 ~i~q~~~-~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~ 309 (572)
T PRK04537 231 RVRQRIY-FPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLE 309 (572)
T ss_pred ceeEEEE-ecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCe
Confidence 2333322 233456778888888877788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCC
Q 014134 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (430)
Q Consensus 311 vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~ 380 (430)
|||||+++++|||+|++++||+|++|.+.++|+||+||+||.|..|.+++|+.+.+...+..+.+.....
T Consensus 310 VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~ 379 (572)
T PRK04537 310 ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQK 379 (572)
T ss_pred EEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999999888888887765443
No 12
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=6.8e-56 Score=430.09 Aligned_cols=346 Identities=21% Similarity=0.273 Sum_probs=277.3
Q ss_pred ccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC------CCeEEEEcchH
Q 014134 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~------~~~~lil~Pt~ 88 (430)
..|+.+++++.+.+.|.. +||.+|+|+|.+++|.+++|+|++++||||||||++|++|+++. ..++||++||+
T Consensus 4 ~~f~~l~l~~~l~~~l~~-~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptr 82 (460)
T PRK11776 4 TAFSTLPLPPALLANLNE-LGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTR 82 (460)
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCH
Confidence 358899999999999998 89999999999999999999999999999999999999999753 34799999999
Q ss_pred HHHHHHHHHHHHcC-----cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh--hhcCCccE
Q 014134 89 ALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNL 161 (430)
Q Consensus 89 ~L~~q~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~--~~~~~~~~ 161 (430)
+|+.|+.++++.++ .......++....... ..+. ... +++|+||+++.++... ..+..+++
T Consensus 83 eLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~---~~l~---~~~------~IvV~Tp~rl~~~l~~~~~~l~~l~~ 150 (460)
T PRK11776 83 ELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQI---DSLE---HGA------HIIVGTPGRILDHLRKGTLDLDALNT 150 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHH---HHhc---CCC------CEEEEChHHHHHHHHcCCccHHHCCE
Confidence 99999999988753 2333333333322211 1111 112 2389999998887653 33567899
Q ss_pred EEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecC
Q 014134 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240 (430)
Q Consensus 162 lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (430)
||+||||++.++| |. ..+..+....| ..|++++|||+++.........+.....+.+........+...+...
T Consensus 151 lViDEad~~l~~g--~~---~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~- 224 (460)
T PRK11776 151 LVLDEADRMLDMG--FQ---DAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEV- 224 (460)
T ss_pred EEEECHHHHhCcC--cH---HHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEe-
Confidence 9999999999988 44 44455556555 67899999999988766444443322222222222233333333333
Q ss_pred cchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccc
Q 014134 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (430)
Q Consensus 241 ~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 320 (430)
....+...+..++......++||||++++.++.+++.|.+.+..+..+||++++.+|+.+++.|++|+.+|||||+++++
T Consensus 225 ~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~r 304 (460)
T PRK11776 225 SPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAAR 304 (460)
T ss_pred CcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEeccccc
Confidence 23458888888888777789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccC
Q 014134 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (430)
Q Consensus 321 Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~ 379 (430)
|+|+|++++||++++|.++..|+||+||+||+|..|.+++++.++|...++.+.+....
T Consensus 305 GiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 305 GLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred ccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999998888888776544
No 13
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.2e-56 Score=435.22 Aligned_cols=353 Identities=21% Similarity=0.304 Sum_probs=275.2
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc-------------CCC
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-------------KPG 79 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~-------------~~~ 79 (430)
+...|+.+++++.+...|.. .||..|||+|.+++|.+++|+|++++||||||||++|++|++. .++
T Consensus 119 pi~~f~~~~l~~~l~~~L~~-~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~ 197 (518)
T PLN00206 119 PILSFSSCGLPPKLLLNLET-AGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNP 197 (518)
T ss_pred hhcCHHhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCc
Confidence 45667888999999999998 8999999999999999999999999999999999999999873 356
Q ss_pred eEEEEcchHHHHHHHHHHHHHcCcc----eeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh--
Q 014134 80 IVLVVSPLIALMENQVIGLKEKGIA----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-- 153 (430)
Q Consensus 80 ~~lil~Pt~~L~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~-- 153 (430)
++|||+||++|+.|+.+.++.++.. .....++...... . ..+. ... +++|+||+++.+++..
T Consensus 198 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q--~-~~l~---~~~------~IiV~TPgrL~~~l~~~~ 265 (518)
T PLN00206 198 LAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQ--L-YRIQ---QGV------ELIVGTPGRLIDLLSKHD 265 (518)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHH--H-HHhc---CCC------CEEEECHHHHHHHHHcCC
Confidence 8999999999999999888776432 2222222221111 1 1111 112 2399999998887653
Q ss_pred hhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccC-CC--C
Q 014134 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF-NR--P 230 (430)
Q Consensus 154 ~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~ 230 (430)
..+.++++||+||||++.++| |+. .+..+....++.|++++|||+++.+....... ..++..+.... .. .
T Consensus 266 ~~l~~v~~lViDEad~ml~~g--f~~---~i~~i~~~l~~~q~l~~SATl~~~v~~l~~~~--~~~~~~i~~~~~~~~~~ 338 (518)
T PLN00206 266 IELDNVSVLVLDEVDCMLERG--FRD---QVMQIFQALSQPQVLLFSATVSPEVEKFASSL--AKDIILISIGNPNRPNK 338 (518)
T ss_pred ccchheeEEEeecHHHHhhcc--hHH---HHHHHHHhCCCCcEEEEEeeCCHHHHHHHHHh--CCCCEEEEeCCCCCCCc
Confidence 346678999999999999988 554 34555666788999999999999876533332 23444443221 11 1
Q ss_pred ceEEEEEecCcchhHHHHHHHHHHhcC--CceEEEEeCccccHHHHHHHHHc-CCCcceeecCCCCHHHHHHHHHHhhcC
Q 014134 231 NLFYEVRYKDLLDDAYADLCSVLKANG--DTCAIVYCLERTTCDELSAYLSA-GGISCAAYHAGLNDKARSSVLDDWISS 307 (430)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~iVf~~s~~~~~~l~~~l~~-~~~~~~~~hg~~~~~~r~~~~~~f~~g 307 (430)
.+........ ...+...+.+++.... ..++||||+++..++.+++.|.. .++.+..+||++++.+|..+++.|++|
T Consensus 339 ~v~q~~~~~~-~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G 417 (518)
T PLN00206 339 AVKQLAIWVE-TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVG 417 (518)
T ss_pred ceeEEEEecc-chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCC
Confidence 2222222222 2345566677766432 35899999999999999999975 588999999999999999999999999
Q ss_pred CceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCCCCchh
Q 014134 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386 (430)
Q Consensus 308 ~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (430)
+.+|||||+++++|+|+|++++||+|++|.+..+|+||+||+||.|..|.+++|+++++...+..+.+.++.....++.
T Consensus 418 ~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~ 496 (518)
T PLN00206 418 EVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPR 496 (518)
T ss_pred CCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999988888888877765544443
No 14
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=4.5e-55 Score=433.99 Aligned_cols=350 Identities=44% Similarity=0.751 Sum_probs=299.2
Q ss_pred CCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHHHHH
Q 014134 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGL 98 (430)
Q Consensus 19 ~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~~~~ 98 (430)
.+++.......|++.|||.+|+|+|.++++.+++|+|+++.+|||+|||++|.+|++.....+||++|+++|+.|+.+.+
T Consensus 6 ~~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~l 85 (607)
T PRK11057 6 VLNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQL 85 (607)
T ss_pred cCCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHHH
Confidence 34555566677888899999999999999999999999999999999999999999988889999999999999999999
Q ss_pred HHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcH
Q 014134 99 KEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (430)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~ 178 (430)
..+|+......+................. ..++++.+|+.+.+.. +........++++|+||||.+.+||++|+
T Consensus 86 ~~~gi~~~~~~s~~~~~~~~~~~~~~~~g--~~~il~~tPe~l~~~~----~~~~l~~~~l~~iVIDEaH~i~~~G~~fr 159 (607)
T PRK11057 86 LANGVAAACLNSTQTREQQLEVMAGCRTG--QIKLLYIAPERLMMDN----FLEHLAHWNPALLAVDEAHCISQWGHDFR 159 (607)
T ss_pred HHcCCcEEEEcCCCCHHHHHHHHHHHhCC--CCcEEEEChHHhcChH----HHHHHhhCCCCEEEEeCccccccccCccc
Confidence 99998887777666555444444444332 3555444444333332 22333345689999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCcchhHHHHHHHHHHhcCC
Q 014134 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258 (430)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 258 (430)
+.+..+..+...+|+.+++++|||+++....++...+...++......+.++++.+.+.... .....+...+....+
T Consensus 160 ~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~---~~~~~l~~~l~~~~~ 236 (607)
T PRK11057 160 PEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKF---KPLDQLMRYVQEQRG 236 (607)
T ss_pred HHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeecc---chHHHHHHHHHhcCC
Confidence 99999999999999999999999999998888888888888888888888888776654432 345567777777778
Q ss_pred ceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCCCC
Q 014134 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKS 338 (430)
Q Consensus 259 ~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s 338 (430)
+++||||+|++.|+.+++.|++.|+.+..+||+|++++|..+++.|++|+++|||||+++++|+|+|++++||++++|.|
T Consensus 237 ~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s 316 (607)
T PRK11057 237 KSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRN 316 (607)
T ss_pred CCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhc
Q 014134 339 MEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (430)
Q Consensus 339 ~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~ 377 (430)
.+.|+||+||+||.|..|.|++|+++.|...++.+++..
T Consensus 317 ~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~~ 355 (607)
T PRK11057 317 IESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEK 355 (607)
T ss_pred HHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999988888777654
No 15
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-58 Score=415.24 Aligned_cols=389 Identities=20% Similarity=0.258 Sum_probs=310.7
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC----------CCeEE
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVL 82 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~----------~~~~l 82 (430)
....|+.|++++...+.|++ -+|..||.+|+++||..+.|+|++..|.||||||++|++|++++ +..+|
T Consensus 67 ~~~kF~dlpls~~t~kgLke-~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGal 145 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKE-AKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGAL 145 (758)
T ss_pred hhhhHHhCCCchHHHHhHhh-cCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeE
Confidence 45689999999999999999 59999999999999999999999999999999999999999864 66799
Q ss_pred EEcchHHHHHHHHHHHHHcCccee----EeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh---hh
Q 014134 83 VVSPLIALMENQVIGLKEKGIAGE----FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI---HS 155 (430)
Q Consensus 83 il~Pt~~L~~q~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~---~~ 155 (430)
|++|||+||.|+++.+.+.|.... +..++..... +...... + +++||||+++...+.- .+
T Consensus 146 IISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~-----E~eRi~~--m------NILVCTPGRLLQHmde~~~f~ 212 (758)
T KOG0343|consen 146 IISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKF-----ELERISQ--M------NILVCTPGRLLQHMDENPNFS 212 (758)
T ss_pred EecchHHHHHHHHHHHHHHhhccccccceeecCchhHH-----HHHhhhc--C------CeEEechHHHHHHhhhcCCCC
Confidence 999999999999999999754433 3333332211 1111111 2 2399999987766542 33
Q ss_pred cCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccC----CCC
Q 014134 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF----NRP 230 (430)
Q Consensus 156 ~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 230 (430)
-.++.++|+||||+++++|+ . ..+..++..+| ..|.++||||....+.. ...+...+|.++.... ..|
T Consensus 213 t~~lQmLvLDEADR~LDMGF--k---~tL~~Ii~~lP~~RQTLLFSATqt~svkd--LaRLsL~dP~~vsvhe~a~~atP 285 (758)
T KOG0343|consen 213 TSNLQMLVLDEADRMLDMGF--K---KTLNAIIENLPKKRQTLLFSATQTKSVKD--LARLSLKDPVYVSVHENAVAATP 285 (758)
T ss_pred CCcceEEEeccHHHHHHHhH--H---HHHHHHHHhCChhheeeeeecccchhHHH--HHHhhcCCCcEEEEeccccccCh
Confidence 45588999999999999994 4 66667777777 78899999999999877 5556677887776542 233
Q ss_pred ceEEEEEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcC--CCcceeecCCCCHHHHHHHHHHhhcCC
Q 014134 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSR 308 (430)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~ 308 (430)
.........-...+++..|...++.+...+.|||+.|++++..+++.|.+. |+++..+||+|++..|..+...|....
T Consensus 286 ~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~ 365 (758)
T KOG0343|consen 286 SNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKR 365 (758)
T ss_pred hhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhc
Confidence 333333333345789999999999999999999999999999999999976 788999999999999999999999999
Q ss_pred ceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCCCCchhhh
Q 014134 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388 (430)
Q Consensus 309 ~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (430)
..||+|||+++||+|+|.|++||++|+|.++++|+||+||++|.+..|.+++++.+.+.+.+-.-++..+....+..-.
T Consensus 366 ~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~I~i~~i~i~- 444 (758)
T KOG0343|consen 366 AVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKKIPIKEIKID- 444 (758)
T ss_pred ceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcCCCHHhhccC-
Confidence 9999999999999999999999999999999999999999999999999999999998555544444443322111111
Q ss_pred HHHHHHhhhhccccccceeecCcceeeeeccccccCCCccc
Q 014134 389 ERWLITVKVLDVAGKRFSRVLGNRYLYHYVKTHAMPANIQT 429 (430)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 429 (430)
. .-+..+++++++++..+..+.+.++.++.||+++
T Consensus 445 -----~-~k~~~i~~~l~~ll~~~~eLk~~aqka~isY~rs 479 (758)
T KOG0343|consen 445 -----P-EKLTSIRNKLEALLAKDPELKEYAQKAFISYLRS 479 (758)
T ss_pred -----H-HHhhhHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 1 1122246677777888888888899999999875
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.1e-55 Score=426.69 Aligned_cols=346 Identities=21% Similarity=0.276 Sum_probs=271.8
Q ss_pred cCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC------------CCeEEE
Q 014134 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVLV 83 (430)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~------------~~~~li 83 (430)
.|+.+++++.+.+.|.+ +||..||++|.+++|.+++++|++++||||||||++|++|+++. ..++||
T Consensus 2 ~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 2 SFDSLGLSPDILRAVAE-QGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CHHHcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 47789999999999998 89999999999999999999999999999999999999998743 237999
Q ss_pred EcchHHHHHHHHHHHHHcC----cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh--hhcC
Q 014134 84 VSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRG 157 (430)
Q Consensus 84 l~Pt~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~--~~~~ 157 (430)
|+||++||.|+.+.+..+. .......++........ .+ ... .+ ++|+||+++..+... ..+.
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l-~~~--~~------IiV~TP~rL~~~~~~~~~~l~ 148 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM---KL-RGG--VD------VLVATPGRLLDLEHQNAVKLD 148 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHH---HH-cCC--Cc------EEEEChHHHHHHHHcCCcccc
Confidence 9999999999999988752 22223333332221111 11 111 22 289999988877543 3467
Q ss_pred CccEEEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEec-cCCCCceEEE
Q 014134 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYE 235 (430)
Q Consensus 158 ~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 235 (430)
.+++||+||||++++++ +. ..+..+...++ ..|.+++|||+++.........+.....+.+.. ......+...
T Consensus 149 ~v~~lViDEah~ll~~~--~~---~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~ 223 (456)
T PRK10590 149 QVEILVLDEADRMLDMG--FI---HDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQH 223 (456)
T ss_pred cceEEEeecHHHHhccc--cH---HHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEE
Confidence 79999999999999887 43 34445555555 568999999999876654444433222222211 2222333333
Q ss_pred EEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEe
Q 014134 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (430)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T 315 (430)
+... ....+...+..++......++||||+++..++.+++.|...++.+..+||++++++|..+++.|++|+++|||||
T Consensus 224 ~~~~-~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT 302 (456)
T PRK10590 224 VHFV-DKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT 302 (456)
T ss_pred EEEc-CHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 3332 234555666777776667799999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCC
Q 014134 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (430)
Q Consensus 316 ~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~ 380 (430)
+++++|+|+|++++||+|++|.++.+|+||+||+||.|..|.+++|+..+|...++.+.+.+...
T Consensus 303 dv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 303 DIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred cHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999998888887766544
No 17
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-56 Score=383.85 Aligned_cols=357 Identities=20% Similarity=0.234 Sum_probs=281.7
Q ss_pred cccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC------CCeEEEEc
Q 014134 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVS 85 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~------~~~~lil~ 85 (430)
.....|+.|++++++...++. +|+.+|||+|..++|.++.|+|++-+|.||||||.+|.+|++++ +.-++|++
T Consensus 4 ~t~~~F~~LGl~~Wlve~l~~-l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlT 82 (442)
T KOG0340|consen 4 KTAKPFSILGLSPWLVEQLKA-LGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLT 82 (442)
T ss_pred cccCchhhcCccHHHHHHHHH-hcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEec
Confidence 356789999999999999998 89999999999999999999999999999999999999999976 55799999
Q ss_pred chHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh------hhcCCc
Q 014134 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI------HSRGLL 159 (430)
Q Consensus 86 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~------~~~~~~ 159 (430)
|||+|+-|+.+.|..+|.......+...++.............+++ +|+||+++.+.... ..+.++
T Consensus 83 PTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHv--------VvatPGRlad~l~sn~~~~~~~~~rl 154 (442)
T KOG0340|consen 83 PTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHV--------VVATPGRLADHLSSNLGVCSWIFQRL 154 (442)
T ss_pred chHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCe--------EecCccccccccccCCccchhhhhce
Confidence 9999999999999987755444433333222222222223333333 99999998887543 346668
Q ss_pred cEEEEecCccccccCCCcHHHHHHHHHHHhhCCC-CcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCC---CceEEE
Q 014134 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR---PNLFYE 235 (430)
Q Consensus 160 ~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~-~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 235 (430)
+++|+||||++++..++ ..+..+....|. +|.++||||+..........-.............+. ..+...
T Consensus 155 kflVlDEADrvL~~~f~-----d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~ 229 (442)
T KOG0340|consen 155 KFLVLDEADRVLAGCFP-----DILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQG 229 (442)
T ss_pred eeEEecchhhhhccchh-----hHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhh
Confidence 99999999999987644 666667777774 589999999998765522222211112222221111 112222
Q ss_pred EEecCcchhHHHHHHHHHHhc---CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEE
Q 014134 236 VRYKDLLDDAYADLCSVLKAN---GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (430)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~~---~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vL 312 (430)
+.. .....+-..+..++... ..+.++||+|+..+|+.++-.|+..++.+..+||.|++++|...+.+|+.+..+||
T Consensus 230 yI~-~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~il 308 (442)
T KOG0340|consen 230 YIL-VSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARIL 308 (442)
T ss_pred eee-cchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEE
Confidence 222 22223334444555432 46789999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCCCC
Q 014134 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383 (430)
Q Consensus 313 v~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 383 (430)
||||+++||+|+|.|+.|||+|.|.+|.+|+||+||++|+|+.|.++.|+++.|.+.+..+++..+.+..+
T Consensus 309 iaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e 379 (442)
T KOG0340|consen 309 IATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTE 379 (442)
T ss_pred EEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998877544
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=7e-55 Score=430.15 Aligned_cols=347 Identities=22% Similarity=0.300 Sum_probs=276.2
Q ss_pred ccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc------CCCeEEEEcchH
Q 014134 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLI 88 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~------~~~~~lil~Pt~ 88 (430)
..|..+++++.++++|.+ +||.+|+|+|.+++|.+++++|++++||||||||++|.+|+++ ..+++||++||+
T Consensus 6 ~~f~~l~L~~~ll~al~~-~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTr 84 (629)
T PRK11634 6 TTFADLGLKAPILEALND-LGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR 84 (629)
T ss_pred CCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcH
Confidence 358889999999999998 8999999999999999999999999999999999999999874 256899999999
Q ss_pred HHHHHHHHHHHHc-----CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh--hhcCCccE
Q 014134 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNL 161 (430)
Q Consensus 89 ~L~~q~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~--~~~~~~~~ 161 (430)
+|+.|+++.+..+ +.......++....... ..+ ... .+ ++|+||+++.+++.. ..++.+++
T Consensus 85 eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~---~~l-~~~--~~------IVVgTPgrl~d~l~r~~l~l~~l~~ 152 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL---RAL-RQG--PQ------IVVGTPGRLLDHLKRGTLDLSKLSG 152 (629)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHH---HHh-cCC--CC------EEEECHHHHHHHHHcCCcchhhceE
Confidence 9999999988775 23333333333222111 111 111 22 299999988776543 34677899
Q ss_pred EEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccC-CCCceEEEEEec
Q 014134 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF-NRPNLFYEVRYK 239 (430)
Q Consensus 162 lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 239 (430)
||+||||.+++++ |. ..+..+....| ..|+++||||+++........++.....+.+.... ..+.+...+. .
T Consensus 153 lVlDEAd~ml~~g--f~---~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~-~ 226 (629)
T PRK11634 153 LVLDEADEMLRMG--FI---EDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYW-T 226 (629)
T ss_pred EEeccHHHHhhcc--cH---HHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEE-E
Confidence 9999999999888 43 44555566665 67899999999988766555544332222222221 2223322222 2
Q ss_pred CcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecccc
Q 014134 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (430)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 319 (430)
.....+...+..++......++||||+++..++.+++.|.+.++.+..+||+|++.+|+.+++.|++|+++|||||++++
T Consensus 227 v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~a 306 (629)
T PRK11634 227 VWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 (629)
T ss_pred echhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHh
Confidence 22346777888888876677899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCC
Q 014134 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (430)
Q Consensus 320 ~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~ 380 (430)
+|+|+|++++||+||+|.+++.|+||+||+||+|+.|.+++|+.+.+...++.+.+..+..
T Consensus 307 rGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~ 367 (629)
T PRK11634 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 (629)
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999988888887776554
No 19
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=5.1e-56 Score=400.96 Aligned_cols=350 Identities=22% Similarity=0.287 Sum_probs=283.6
Q ss_pred cccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc---------------
Q 014134 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA--------------- 76 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~--------------- 76 (430)
.+...|+..+++.++++.+.. .||..|+|+|..++|..++++|+|..|.||||||++|++|++.
T Consensus 242 nplrnwEE~~~P~e~l~~I~~-~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~ 320 (673)
T KOG0333|consen 242 NPLRNWEESGFPLELLSVIKK-PGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNI 320 (673)
T ss_pred ccccChhhcCCCHHHHHHHHh-cCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcc
Confidence 456788899999999999998 7999999999999999999999999999999999999988862
Q ss_pred CCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh--
Q 014134 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH-- 154 (430)
Q Consensus 77 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~-- 154 (430)
.++.+++++|||+|++|+.++-.+++....+.+... .++........++-.+|.++|+||+++.+.+...
T Consensus 321 ~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsv--------igg~s~EEq~fqls~gceiviatPgrLid~Lenr~l 392 (673)
T KOG0333|consen 321 EGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSV--------IGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYL 392 (673)
T ss_pred cCceeeeechHHHHHHHHHHHHHHhcccccceEEEE--------ecccchhhhhhhhhccceeeecCchHHHHHHHHHHH
Confidence 278999999999999999999888643322111111 1111111122445556666999999988876533
Q ss_pred hcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCC--------------------------CCcEEEEEcCCCchhH
Q 014134 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--------------------------DVPILALTATAAPKVQ 208 (430)
Q Consensus 155 ~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~--------------------------~~~~i~~SAT~~~~~~ 208 (430)
-++...++|+||||++.|+| |.+.+.. ++.+.| -.|.+.||||+++.+.
T Consensus 393 vl~qctyvvldeadrmiDmg--fE~dv~~---iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~ve 467 (673)
T KOG0333|consen 393 VLNQCTYVVLDEADRMIDMG--FEPDVQK---ILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVE 467 (673)
T ss_pred HhccCceEeccchhhhhccc--ccHHHHH---HHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHH
Confidence 35557789999999999999 5554433 333332 1579999999999998
Q ss_pred HHHHHHhCCCCCeEEeccC---CCCceEEEEEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcc
Q 014134 209 KDVMESLCLQNPLVLKSSF---NRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISC 285 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~ 285 (430)
.....++ .+|+++..+. ..+.+.+.+.... .+.+...|.+++.+....++|||+|+++.|+.+++.|.+.|+.+
T Consensus 468 rlar~yl--r~pv~vtig~~gk~~~rveQ~v~m~~-ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~ 544 (673)
T KOG0333|consen 468 RLARSYL--RRPVVVTIGSAGKPTPRVEQKVEMVS-EDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKV 544 (673)
T ss_pred HHHHHHh--hCCeEEEeccCCCCccchheEEEEec-chHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceE
Confidence 8666665 5555554332 2233444444433 45669999999998878899999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCcc
Q 014134 286 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (430)
Q Consensus 286 ~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~ 365 (430)
..+||+-++++|+.+++.|++|..+|||||+++++|||+|+|++||+||++.|.++|.||+||+||+|+.|.+++|+++.
T Consensus 545 ~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~ 624 (673)
T KOG0333|consen 545 TTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPA 624 (673)
T ss_pred EEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhcc
Q 014134 366 DRRRMEFILSKNQ 378 (430)
Q Consensus 366 ~~~~~~~~~~~~~ 378 (430)
|-..++.+.+.+.
T Consensus 625 dt~v~ydLkq~l~ 637 (673)
T KOG0333|consen 625 DTAVFYDLKQALR 637 (673)
T ss_pred hhHHHHHHHHHHH
Confidence 9777777766654
No 20
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-56 Score=403.97 Aligned_cols=348 Identities=22% Similarity=0.323 Sum_probs=281.2
Q ss_pred cccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC---------CCeEEEE
Q 014134 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------PGIVLVV 84 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~---------~~~~lil 84 (430)
...|..+.|+..+++++.. +||..|||+|..+||..+-|+|+..||.||||||.+|++|++++ ..+||||
T Consensus 180 ~~sF~~mNLSRPlLka~~~-lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL 258 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACST-LGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVL 258 (691)
T ss_pred hhhHHhcccchHHHHHHHh-cCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEE
Confidence 4578999999999999998 89999999999999999999999999999999999999999864 5689999
Q ss_pred cchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHH---hhhcCCccE
Q 014134 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNL 161 (430)
Q Consensus 85 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~---~~~~~~~~~ 161 (430)
+|||+|+-|++...+++.....+..+...++......+......+++ +|+||+++-+.+. ...++++.+
T Consensus 259 ~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDI--------VIATPGRlIDHlrNs~sf~ldsiEV 330 (691)
T KOG0338|consen 259 VPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDI--------VIATPGRLIDHLRNSPSFNLDSIEV 330 (691)
T ss_pred eccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCE--------EEecchhHHHHhccCCCccccceeE
Confidence 99999999999888775333222222222222222233333344444 9999998776654 344677889
Q ss_pred EEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCC---ceEEEE-
Q 014134 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP---NLFYEV- 236 (430)
Q Consensus 162 lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~- 236 (430)
+|+||||++++.| |. ..+.++.+..| ++|.++||||++..+.. ...+.++.|+.+..+.+.. .+...+
T Consensus 331 LvlDEADRMLeeg--Fa---demnEii~lcpk~RQTmLFSATMteeVkd--L~slSL~kPvrifvd~~~~~a~~LtQEFi 403 (691)
T KOG0338|consen 331 LVLDEADRMLEEG--FA---DEMNEIIRLCPKNRQTMLFSATMTEEVKD--LASLSLNKPVRIFVDPNKDTAPKLTQEFI 403 (691)
T ss_pred EEechHHHHHHHH--HH---HHHHHHHHhccccccceeehhhhHHHHHH--HHHhhcCCCeEEEeCCccccchhhhHHHh
Confidence 9999999999988 44 56666666666 78999999999999877 4556667777666554432 222221
Q ss_pred EecCc-chhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEe
Q 014134 237 RYKDL-LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (430)
Q Consensus 237 ~~~~~-~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T 315 (430)
..... ...+-..+..++...-..+++||+.|.+.|+.+.-.|--.|++++-+||.+++.+|...++.|++++++|||||
T Consensus 404 RIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaT 483 (691)
T KOG0338|consen 404 RIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIAT 483 (691)
T ss_pred eeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEe
Confidence 12211 12333445555555556789999999999999999998899999999999999999999999999999999999
Q ss_pred ccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhc
Q 014134 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (430)
Q Consensus 316 ~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~ 377 (430)
|+++||+||+++.+||||.+|.+.+.|+||+||+.|+|+.|.+++|+.+.|.+.++.+.+..
T Consensus 484 DvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 484 DVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred chhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999998884
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1e-54 Score=419.40 Aligned_cols=344 Identities=24% Similarity=0.326 Sum_probs=277.0
Q ss_pred cCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC----------CCeEEEEc
Q 014134 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVS 85 (430)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~----------~~~~lil~ 85 (430)
.|+.+++++.+.+.|.+ +||.+|+++|.++++.+++|+|++++||||+|||++|++|+++. ..++||++
T Consensus 2 ~f~~l~l~~~l~~~l~~-~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQD-KGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEEC
Confidence 47889999999999998 89999999999999999999999999999999999999998742 36899999
Q ss_pred chHHHHHHHHHHHHHc----CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh--hcCCc
Q 014134 86 PLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SRGLL 159 (430)
Q Consensus 86 Pt~~L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~--~~~~~ 159 (430)
||++|+.|+.+.+..+ +.......++......... .....++ +|+||+++.++.... ....+
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~----l~~~~~I--------lV~Tp~rl~~~~~~~~~~~~~v 148 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEV----FSENQDI--------VVATPGRLLQYIKEENFDCRAV 148 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHH----hcCCCCE--------EEEChHHHHHHHHcCCcCcccC
Confidence 9999999999988775 3344444444333222211 1112222 999999888775533 35668
Q ss_pred cEEEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccC---CCCceEEE
Q 014134 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNLFYE 235 (430)
Q Consensus 160 ~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 235 (430)
++||+||||++++++ +...+.. +....+ ..|+++||||++......+...+. .++..+.... ....+...
T Consensus 149 ~~lViDEah~~l~~~--~~~~~~~---i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~i~~~ 222 (434)
T PRK11192 149 ETLILDEADRMLDMG--FAQDIET---IAAETRWRKQTLLFSATLEGDAVQDFAERLL-NDPVEVEAEPSRRERKKIHQW 222 (434)
T ss_pred CEEEEECHHHHhCCC--cHHHHHH---HHHhCccccEEEEEEeecCHHHHHHHHHHHc-cCCEEEEecCCcccccCceEE
Confidence 999999999999988 5544443 333333 568999999998765555555543 3444443322 22334444
Q ss_pred EEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEe
Q 014134 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (430)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T 315 (430)
....+....+.+.+..++......++||||++++.++.+++.|++.++.+..+||++++.+|..+++.|++|+++|||||
T Consensus 223 ~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaT 302 (434)
T PRK11192 223 YYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVAT 302 (434)
T ss_pred EEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEc
Confidence 44455556788888888887677899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhcc
Q 014134 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (430)
Q Consensus 316 ~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~ 378 (430)
+++++|+|+|++++||++++|.+...|+||+||+||.|..|.+++++..+|...+..+.+...
T Consensus 303 d~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~ 365 (434)
T PRK11192 303 DVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIE 365 (434)
T ss_pred cccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999888888876443
No 22
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.4e-56 Score=387.99 Aligned_cols=367 Identities=20% Similarity=0.281 Sum_probs=299.5
Q ss_pred cccccCCC-CChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc------------CC
Q 014134 12 SQTQKNKP-LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------------KP 78 (430)
Q Consensus 12 ~~~~~~~~-~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~------------~~ 78 (430)
.+++.|+. |+..+++...+++ .||.+|+|+|++|||.+++|.|++..|.||+|||++|++|.+- .+
T Consensus 216 nP~ctFddAFq~~pevmenIkK-~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~ 294 (629)
T KOG0336|consen 216 NPVCTFDDAFQCYPEVMENIKK-TGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNG 294 (629)
T ss_pred CCcCcHHHHHhhhHHHHHHHHh-ccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCC
Confidence 45677766 8999999999998 7999999999999999999999999999999999999988752 16
Q ss_pred CeEEEEcchHHHHHHHHHHHHHcC---cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHH--h
Q 014134 79 GIVLVVSPLIALMENQVIGLKEKG---IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--I 153 (430)
Q Consensus 79 ~~~lil~Pt~~L~~q~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~--~ 153 (430)
+.+|+++||++|+.|+.-++.++. .......+...-. ...+.+. ....+ +++||+++.++.. .
T Consensus 295 p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~---eqie~lk---rgvei------iiatPgrlndL~~~n~ 362 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRN---EQIEDLK---RGVEI------IIATPGRLNDLQMDNV 362 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCch---hHHHHHh---cCceE------EeeCCchHhhhhhcCe
Confidence 789999999999999988877752 3333332322222 2222222 11222 8999999999854 4
Q ss_pred hhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEE-eccCCC---
Q 014134 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL-KSSFNR--- 229 (430)
Q Consensus 154 ~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~-~~~~~~--- 229 (430)
.++..+.++|+||||+++++| |++.+..+ ++...|++|.++.|||+|+.+.+....++. +|.++ ..+.+.
T Consensus 363 i~l~siTYlVlDEADrMLDMg--FEpqIrki--lldiRPDRqtvmTSATWP~~VrrLa~sY~K--ep~~v~vGsLdL~a~ 436 (629)
T KOG0336|consen 363 INLASITYLVLDEADRMLDMG--FEPQIRKI--LLDIRPDRQTVMTSATWPEGVRRLAQSYLK--EPMIVYVGSLDLVAV 436 (629)
T ss_pred eeeeeeEEEEecchhhhhccc--ccHHHHHH--hhhcCCcceeeeecccCchHHHHHHHHhhh--CceEEEecccceeee
Confidence 556778899999999999999 88877776 667778999999999999999886666554 44433 223222
Q ss_pred CceEEEEEecCcchhHHHHHHHHHHhc-CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCC
Q 014134 230 PNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (430)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 308 (430)
..+...+ .......++..+..++... +..++||||..+..|+.+...|.-.|+....+||+-.+.+|+..++.|+.|+
T Consensus 437 ~sVkQ~i-~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~ 515 (629)
T KOG0336|consen 437 KSVKQNI-IVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGE 515 (629)
T ss_pred eeeeeeE-EecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCc
Confidence 2222333 5555677887777777765 5779999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCCCCchhhh
Q 014134 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388 (430)
Q Consensus 309 ~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (430)
++|||+||.+++|+|+|+++||++||+|.+.+.|+||+||+||+|+.|.+++|++.+|-.....+++.+...+.+++..+
T Consensus 516 vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL 595 (629)
T KOG0336|consen 516 VRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDEL 595 (629)
T ss_pred eEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888888776
Q ss_pred HHHHHHhhhh
Q 014134 389 ERWLITVKVL 398 (430)
Q Consensus 389 ~~~~~~~~~~ 398 (430)
.......+..
T Consensus 596 ~~mAeryk~~ 605 (629)
T KOG0336|consen 596 VRMAERYKLK 605 (629)
T ss_pred HHHHHHHHhh
Confidence 6555544443
No 23
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1e-53 Score=425.88 Aligned_cols=340 Identities=42% Similarity=0.728 Sum_probs=298.3
Q ss_pred HHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCcceeE
Q 014134 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (430)
Q Consensus 28 ~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 107 (430)
..|++.|||.+|+|+|.++++.+++|+|+++++|||+|||++|.+|++.....++|++|+++|+.|+++.++.+|+....
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~ 82 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAAGVAAAY 82 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHcCCcEEE
Confidence 45788899999999999999999999999999999999999999999988889999999999999999999999988877
Q ss_pred eCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHH--HHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHH
Q 014134 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS--KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (430)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~--~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~ 185 (430)
+.+.............+.... .++ ++.||+++. .+........++++|+||||.+.+||++|++.+..+.
T Consensus 83 ~~s~~~~~~~~~~~~~l~~~~--~~i------l~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~ 154 (591)
T TIGR01389 83 LNSTLSAKEQQDIEKALVNGE--LKL------LYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLG 154 (591)
T ss_pred EeCCCCHHHHHHHHHHHhCCC--CCE------EEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHH
Confidence 777776665555555554433 455 445555442 2233444567999999999999999999999999999
Q ss_pred HHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCcchhHHHHHHHHHHhcCCceEEEEe
Q 014134 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265 (430)
Q Consensus 186 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~ 265 (430)
.+...+|+.+++++|||+++.+..++...+....+..+..++.++++.+.+.... .+...+.+++....+.++||||
T Consensus 155 ~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~---~~~~~l~~~l~~~~~~~~IIf~ 231 (591)
T TIGR01389 155 SLAERFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKN---NKQKFLLDYLKKHRGQSGIIYA 231 (591)
T ss_pred HHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCC---CHHHHHHHHHHhcCCCCEEEEE
Confidence 9999999999999999999999999999998888888888888888877766543 4566777777776678899999
Q ss_pred CccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHH
Q 014134 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQE 345 (430)
Q Consensus 266 ~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~ 345 (430)
+|++.++.+++.|.+.|+++..+||+|+.++|..+++.|.+|+++|||||+++++|||+|++++||++++|.|.+.|.|+
T Consensus 232 ~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~ 311 (591)
T TIGR01389 232 SSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQE 311 (591)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCceEEEeeCccchHHHHHHHHhcc
Q 014134 346 SGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (430)
Q Consensus 346 ~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~ 378 (430)
+||+||.|..|.|++++++.|...++.+++...
T Consensus 312 ~GRaGR~G~~~~~il~~~~~d~~~~~~~i~~~~ 344 (591)
T TIGR01389 312 AGRAGRDGLPAEAILLYSPADIALLKRRIEQSE 344 (591)
T ss_pred hccccCCCCCceEEEecCHHHHHHHHHHHhccC
Confidence 999999999999999999999988888876643
No 24
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.8e-54 Score=418.81 Aligned_cols=348 Identities=18% Similarity=0.252 Sum_probs=274.1
Q ss_pred cccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC-------------CCe
Q 014134 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------------PGI 80 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~-------------~~~ 80 (430)
...|.++++++.+.+.|.+ +||.+|+++|.++++.+++|+|++++||||||||++|++|+++. ..+
T Consensus 86 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHD-LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCHhHCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 4467889999999999998 89999999999999999999999999999999999999998742 468
Q ss_pred EEEEcchHHHHHHHHHHHHHcC----cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh--h
Q 014134 81 VLVVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--H 154 (430)
Q Consensus 81 ~lil~Pt~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~--~ 154 (430)
+|||+||++|+.|+.+.++.+. .......++...... ...+.....++ +|+||+++..+... .
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~---~~~~~~~~~~I--------iv~TP~~Ll~~~~~~~~ 233 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQ---LKQLEARFCDI--------LVATPGRLLDFNQRGEV 233 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHH---HHHHhCCCCCE--------EEECHHHHHHHHHcCCc
Confidence 9999999999999999988763 333333333222111 11222222223 89999988776543 3
Q ss_pred hcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCC---CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccC---C
Q 014134 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---N 228 (430)
Q Consensus 155 ~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---~ 228 (430)
.++++++||+||+|.+.+++ +...+ ..+....+ +.|++++|||++.........+.. ++..+.... .
T Consensus 234 ~l~~l~~lViDEah~l~~~~--~~~~l---~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~--~~~~v~~~~~~~~ 306 (475)
T PRK01297 234 HLDMVEVMVLDEADRMLDMG--FIPQV---RQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTT--DPAIVEIEPENVA 306 (475)
T ss_pred ccccCceEEechHHHHHhcc--cHHHH---HHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhcc--CCEEEEeccCcCC
Confidence 46678999999999998877 54444 44444443 568999999999877665444443 333332211 1
Q ss_pred CCceEEEEEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCC
Q 014134 229 RPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (430)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 308 (430)
...+...+.. .....+...+..++......++||||++++.++.+++.|.+.++.+..+||++++++|..+++.|++|+
T Consensus 307 ~~~~~~~~~~-~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~ 385 (475)
T PRK01297 307 SDTVEQHVYA-VAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGK 385 (475)
T ss_pred CCcccEEEEE-ecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCC
Confidence 1222222222 223456777888888777789999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCC
Q 014134 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381 (430)
Q Consensus 309 ~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~ 381 (430)
+++||||+++++|+|+|++++||++++|.|..+|+||+||+||.|..|.+++|+.++|...+..+.+......
T Consensus 386 ~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 386 IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKI 458 (475)
T ss_pred CcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999999998888888877665543
No 25
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.2e-56 Score=401.18 Aligned_cols=354 Identities=19% Similarity=0.255 Sum_probs=273.9
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc------------CCCe
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------------KPGI 80 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~------------~~~~ 80 (430)
.+..|..+++++-+...|...+++..||.+|.++||.+++|+|++|.|+||||||++|++|+++ .+..
T Consensus 134 ts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ 213 (708)
T KOG0348|consen 134 TSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPY 213 (708)
T ss_pred ccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCce
Confidence 4678899999999999999999999999999999999999999999999999999999999974 2778
Q ss_pred EEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHH---hhhcC
Q 014134 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRG 157 (430)
Q Consensus 81 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~---~~~~~ 157 (430)
+||++||||||.|+++.++++.....-+..+...+.. .......++..+.+++|+||+++.+.+. .....
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGE-------kkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s 286 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGE-------KKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFS 286 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCceEEeeceeeccc-------ccccHHHHHhcCceEEEcCchHHHHHHhccchheee
Confidence 9999999999999999999974433222222111111 1111122333344449999998877654 34466
Q ss_pred CccEEEEecCccccccCCCcHHHHHHHHHHHhhCC-----------CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEecc
Q 014134 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-----------DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS 226 (430)
Q Consensus 158 ~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 226 (430)
.+++||+||+|++++.| |...+..+..+....+ ..|.+++|||+...+.+ ...+.+.+++++..+
T Consensus 287 ~LRwlVlDEaDrlleLG--fekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~r--La~~sLkDpv~I~ld 362 (708)
T KOG0348|consen 287 RLRWLVLDEADRLLELG--FEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNR--LADLSLKDPVYISLD 362 (708)
T ss_pred eeeEEEecchhHHHhcc--chhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHH--HhhccccCceeeecc
Confidence 69999999999999999 6666655555543211 35789999999998877 667778888887622
Q ss_pred CCCC----------------------------ceEEEEEecCcchhHHHHHHHHH----HhcCCceEEEEeCccccHHHH
Q 014134 227 FNRP----------------------------NLFYEVRYKDLLDDAYADLCSVL----KANGDTCAIVYCLERTTCDEL 274 (430)
Q Consensus 227 ~~~~----------------------------~~~~~~~~~~~~~~~~~~l~~~l----~~~~~~~~iVf~~s~~~~~~l 274 (430)
.... ++...+.... ..-++..|..++ +.....++|||+.+.+.++.-
T Consensus 363 ~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVP-pKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFH 441 (708)
T KOG0348|consen 363 KSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVP-PKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFH 441 (708)
T ss_pred chhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecC-CchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHH
Confidence 1111 1111111111 122333444444 334566899999999999999
Q ss_pred HHHHHcC----------------------CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEE
Q 014134 275 SAYLSAG----------------------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332 (430)
Q Consensus 275 ~~~l~~~----------------------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~ 332 (430)
++.|.+. +..++.+||+|++++|..+++.|...+-.||+|||+++||+|+|+|++||.
T Consensus 442 y~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ 521 (708)
T KOG0348|consen 442 YSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ 521 (708)
T ss_pred HHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE
Confidence 9888642 235688999999999999999999998889999999999999999999999
Q ss_pred ecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhcc
Q 014134 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (430)
Q Consensus 333 ~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~ 378 (430)
||+|.++++|+||+||++|+|..|.++.|+.+.+.++++.+.....
T Consensus 522 Yd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~ 567 (708)
T KOG0348|consen 522 YDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHI 567 (708)
T ss_pred eCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999998777765543
No 26
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6e-56 Score=377.44 Aligned_cols=356 Identities=21% Similarity=0.251 Sum_probs=293.9
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC------CCeEEEEcc
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~------~~~~lil~P 86 (430)
.-..|+++.+.++++..+.+ .||++|+|+|.+++|..+.|+|+++.|..|+|||.+|.+|++++ .-+++|++|
T Consensus 83 kG~efEd~~Lkr~LLmgIfe-~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVP 161 (459)
T KOG0326|consen 83 KGNEFEDYCLKRELLMGIFE-KGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVP 161 (459)
T ss_pred cCccHHHhhhhHHHHHHHHH-hccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEee
Confidence 46689999999999999999 79999999999999999999999999999999999999999965 457999999
Q ss_pred hHHHHHHHHHHHHHcC----cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh--hhcCCcc
Q 014134 87 LIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLN 160 (430)
Q Consensus 87 t~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~--~~~~~~~ 160 (430)
||+||.|+.+.+.+++ +.+.+.+++.. ..+++......+++ +|+||++..++.+. ..++...
T Consensus 162 trelALQtSqvc~~lskh~~i~vmvttGGT~------lrDDI~Rl~~~VH~------~vgTPGRIlDL~~KgVa~ls~c~ 229 (459)
T KOG0326|consen 162 TRELALQTSQVCKELSKHLGIKVMVTTGGTS------LRDDIMRLNQTVHL------VVGTPGRILDLAKKGVADLSDCV 229 (459)
T ss_pred cchhhHHHHHHHHHHhcccCeEEEEecCCcc------cccceeeecCceEE------EEcCChhHHHHHhcccccchhce
Confidence 9999999998888754 33333333322 22333333333333 99999999998653 3466678
Q ss_pred EEEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEec
Q 014134 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 239 (430)
Q Consensus 161 ~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (430)
++|+||||.+++.. |. ..+..++..+| +.|++++|||.|-.+...+...+..+..+-+-.+.....+...+.+.
T Consensus 230 ~lV~DEADKlLs~~--F~---~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV 304 (459)
T KOG0326|consen 230 ILVMDEADKLLSVD--FQ---PIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFV 304 (459)
T ss_pred EEEechhhhhhchh--hh---hHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeee
Confidence 99999999999876 44 44566677777 67899999999999988777777655544433444444443333332
Q ss_pred CcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecccc
Q 014134 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (430)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 319 (430)
. ...|...|..+..+..-.+.||||||.+.++.+++.+.+.|++|+++|++|.+++|..++..|++|.++.|||||.+.
T Consensus 305 ~-e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~T 383 (459)
T KOG0326|consen 305 E-ERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFT 383 (459)
T ss_pred c-hhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhh
Confidence 2 246777777777776667899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCCCCchhh
Q 014134 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387 (430)
Q Consensus 320 ~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (430)
||+|++++++||++|+|.+.++|+||+||+||.|..|.++.+++-+|...+..++++++.....+++.
T Consensus 384 RGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~ 451 (459)
T KOG0326|consen 384 RGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSN 451 (459)
T ss_pred cccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999998876655544
No 27
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3.7e-53 Score=405.93 Aligned_cols=349 Identities=20% Similarity=0.286 Sum_probs=272.2
Q ss_pred cccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc------CCCeEEEEcch
Q 014134 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPL 87 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~------~~~~~lil~Pt 87 (430)
...|+.+++++.+.+.+.. +||..|+++|.++++.+++++|++++||||||||++|+++++. .+.++||++|+
T Consensus 27 ~~~~~~l~l~~~~~~~l~~-~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt 105 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYS-YGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPT 105 (401)
T ss_pred cCCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCC
Confidence 4678889999999999998 8999999999999999999999999999999999999988874 25689999999
Q ss_pred HHHHHHHHHHHHHcCcc----eeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh--hhcCCccE
Q 014134 88 IALMENQVIGLKEKGIA----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNL 161 (430)
Q Consensus 88 ~~L~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~--~~~~~~~~ 161 (430)
++|+.|+.+.+..++.. .....++.... . ....... . . +++|+||+++..+... ....++++
T Consensus 106 ~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~--~-~~~~~~~-~--~------~Ivv~Tp~~l~~~l~~~~~~l~~i~l 173 (401)
T PTZ00424 106 RELAQQIQKVVLALGDYLKVRCHACVGGTVVR--D-DINKLKA-G--V------HMVVGTPGRVYDMIDKRHLRVDDLKL 173 (401)
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCcCHH--H-HHHHHcC-C--C------CEEEECcHHHHHHHHhCCcccccccE
Confidence 99999999988876422 11122221111 1 1111111 1 1 2389999988776543 34677999
Q ss_pred EEEecCccccccCCCcHHHHHHHHHHHhhC-CCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEec-cCCCCceEEEEEec
Q 014134 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYK 239 (430)
Q Consensus 162 lViDE~h~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 239 (430)
+|+||+|++.+++ +... +..+.... ++.|++++|||+++........++.......+.. ......+...+...
T Consensus 174 vViDEah~~~~~~--~~~~---~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (401)
T PTZ00424 174 FILDEADEMLSRG--FKGQ---IYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAV 248 (401)
T ss_pred EEEecHHHHHhcc--hHHH---HHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEec
Confidence 9999999998876 4432 33334443 4789999999999876664444443222222222 11223333333333
Q ss_pred CcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecccc
Q 014134 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (430)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 319 (430)
.....+...+..++......++||||++++.++.+++.|.+.+..+..+||++++.+|..+++.|++|+++|||||++++
T Consensus 249 ~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~ 328 (401)
T PTZ00424 249 EKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLA 328 (401)
T ss_pred ChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEccccc
Confidence 33345666777777766677899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCC
Q 014134 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (430)
Q Consensus 320 ~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~ 380 (430)
+|+|+|++++||++++|.+...|+||+||+||.|..|.|++++++++.+.+..+.+.....
T Consensus 329 ~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~ 389 (401)
T PTZ00424 329 RGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQ 389 (401)
T ss_pred CCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCc
Confidence 9999999999999999999999999999999999999999999999999888887666543
No 28
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.7e-52 Score=394.18 Aligned_cols=347 Identities=47% Similarity=0.825 Sum_probs=317.9
Q ss_pred HHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCcce
Q 014134 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (430)
Q Consensus 26 ~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 105 (430)
+...|++.||+..+++-|.++|..+++++|+++..|||.||++||.+|++-..+.+|||+|..+|...+++.++..|+..
T Consensus 5 ~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~Gi~A 84 (590)
T COG0514 5 AQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAAGIRA 84 (590)
T ss_pred HHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHcCcee
Confidence 34679999999999999999999999999999999999999999999999888899999999999999999999999998
Q ss_pred eEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHH
Q 014134 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (430)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~ 185 (430)
....+.........+...+... ..++++.+|+.+.+|.++..+. ...+.+++|||||.+.+||++|++.|..+.
T Consensus 85 ~~lnS~l~~~e~~~v~~~l~~g--~~klLyisPErl~~~~f~~~L~----~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg 158 (590)
T COG0514 85 AYLNSTLSREERQQVLNQLKSG--QLKLLYISPERLMSPRFLELLK----RLPISLVAIDEAHCISQWGHDFRPDYRRLG 158 (590)
T ss_pred ehhhcccCHHHHHHHHHHHhcC--ceeEEEECchhhcChHHHHHHH----hCCCceEEechHHHHhhcCCccCHhHHHHH
Confidence 8888888887777777766654 4899999999999997665555 555889999999999999999999999999
Q ss_pred HHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCcchhHHHHHHHHHHhcCCceEEEEe
Q 014134 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265 (430)
Q Consensus 186 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~ 265 (430)
.+...+|+.+++++|||-++.+..++...+....+..+..+++++++.+.+........++..+.+ ......+..||||
T Consensus 159 ~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GIIYc 237 (590)
T COG0514 159 RLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGIIYC 237 (590)
T ss_pred HHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHh-hccccCCCeEEEE
Confidence 999999999999999999999999999999999999999999999999999888744455554443 2244566789999
Q ss_pred CccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHH
Q 014134 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQE 345 (430)
Q Consensus 266 ~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~ 345 (430)
.|++.++.+++.|.+.|+.+..+|++|+.++|+.+.++|..++++|+|||.+.++|||-|++.+||||++|.|++.|.|-
T Consensus 238 ~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE 317 (590)
T COG0514 238 LTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQE 317 (590)
T ss_pred eeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCceEEEeeCccchHHHHHHHHhccC
Q 014134 346 SGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (430)
Q Consensus 346 ~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~ 379 (430)
+||+||.|....|++++.+.|....+.+++...+
T Consensus 318 ~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~~ 351 (590)
T COG0514 318 TGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSKP 351 (590)
T ss_pred HhhccCCCCcceEEEeeccccHHHHHHHHHhhcc
Confidence 9999999999999999999999999999888765
No 29
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-54 Score=392.33 Aligned_cols=361 Identities=20% Similarity=0.262 Sum_probs=283.2
Q ss_pred cCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC----------------CC
Q 014134 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------------PG 79 (430)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~----------------~~ 79 (430)
.|..-.+.+.+...++. .|+..|+|+|+.++|.+..|+++++||+||+|||.+|++|++.. .+
T Consensus 75 ~f~~~~l~~~l~~ni~~-~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 75 TFDEAILGEALAGNIKR-SGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred cccccchhHHHhhcccc-ccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 55566778888888887 69999999999999999999999999999999999999999732 37
Q ss_pred eEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh--hcC
Q 014134 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SRG 157 (430)
Q Consensus 80 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~--~~~ 157 (430)
+++|++|||+|+.|++.+.+++.....+.......+ ....... -.+--+++++|+||+++.++.+.. .+.
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg--~~~~~q~------~~~~~gcdIlvaTpGrL~d~~e~g~i~l~ 225 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGG--TDLGAQL------RFIKRGCDILVATPGRLKDLIERGKISLD 225 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCC--cchhhhh------hhhccCccEEEecCchhhhhhhcceeehh
Confidence 899999999999999999999633222221111111 1111111 222334455999999999997644 466
Q ss_pred CccEEEEecCccccc-cCCCcHHHHHHHHHHHhhCC--CCcEEEEEcCCCchhHHHHHHHhCCCCCe--EEeccCCCCce
Q 014134 158 LLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCLQNPL--VLKSSFNRPNL 232 (430)
Q Consensus 158 ~~~~lViDE~h~~~~-~~~~~~~~~~~l~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 232 (430)
+.+++|+||||+++| +| |.+.++.+..-..+.+ +.|.++||||.+..........+...... +-.......++
T Consensus 226 ~~k~~vLDEADrMlD~mg--F~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni 303 (482)
T KOG0335|consen 226 NCKFLVLDEADRMLDEMG--FEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENI 303 (482)
T ss_pred hCcEEEecchHHhhhhcc--ccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccc
Confidence 788999999999999 77 7777666655544443 77899999999998877444444332222 22344555666
Q ss_pred EEEEEecCcchhHHHHHHHHHHhcC----Cc-----eEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHH
Q 014134 233 FYEVRYKDLLDDAYADLCSVLKANG----DT-----CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDD 303 (430)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~~~~----~~-----~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~ 303 (430)
...+..... ..+...|.+++.... .. +++|||.+++.|..++..|...+.++..+||..++.+|.+.++.
T Consensus 304 ~q~i~~V~~-~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~ 382 (482)
T KOG0335|consen 304 TQKILFVNE-MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALND 382 (482)
T ss_pred eeEeeeecc-hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHH
Confidence 666665543 345555566555322 23 79999999999999999999999999999999999999999999
Q ss_pred hhcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCCCC
Q 014134 304 WISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383 (430)
Q Consensus 304 f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 383 (430)
|++|...+||||++++||+|+|+|++||+||+|.+..+|+||+||+||.|+.|.++.|++..+....+.+.+.+...+..
T Consensus 383 Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~ 462 (482)
T KOG0335|consen 383 FRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQE 462 (482)
T ss_pred hhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999988888888888777666655
Q ss_pred chhhh
Q 014134 384 SFSTR 388 (430)
Q Consensus 384 ~~~~~ 388 (430)
++..+
T Consensus 463 vP~wl 467 (482)
T KOG0335|consen 463 VPQWL 467 (482)
T ss_pred CcHHH
Confidence 54433
No 30
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-53 Score=377.61 Aligned_cols=348 Identities=21% Similarity=0.277 Sum_probs=280.1
Q ss_pred ccccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC------------C
Q 014134 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------P 78 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~------------~ 78 (430)
.+.++.|+.+++.+.+++++.. .||++||-+|+.|||.++.|+|++..|.||||||.+|++|+++. +
T Consensus 15 e~~~ktFe~~gLD~RllkAi~~-lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~ 93 (569)
T KOG0346|consen 15 ESKEKTFEEFGLDSRLLKAITK-LGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQG 93 (569)
T ss_pred hhhhccHHHhCCCHHHHHHHHH-hCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhccccccc
Confidence 4456899999999999999998 89999999999999999999999999999999999999999842 6
Q ss_pred CeEEEEcchHHHHHHHHHHHHHcCcce----eEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh
Q 014134 79 GIVLVVSPLIALMENQVIGLKEKGIAG----EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH 154 (430)
Q Consensus 79 ~~~lil~Pt~~L~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~ 154 (430)
+.++|++||++||+|++..+.++-..+ ...... ...............+++ +|+||+++..+....
T Consensus 94 ~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~--s~~sdsv~~~~L~d~pdI--------vV~TP~~ll~~~~~~ 163 (569)
T KOG0346|consen 94 PSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLA--SSMSDSVNSVALMDLPDI--------VVATPAKLLRHLAAG 163 (569)
T ss_pred ceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhh--cccchHHHHHHHccCCCe--------EEeChHHHHHHHhhc
Confidence 789999999999999999988852111 111111 011111111222222233 999999888876543
Q ss_pred h---cCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCC--
Q 014134 155 S---RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-- 228 (430)
Q Consensus 155 ~---~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-- 228 (430)
. ...++++|+||||.++.+|+ . ..+..+...+| ..|.++||||+..++.. ...+.+.+|+++.....
T Consensus 164 ~~~~~~~l~~LVvDEADLllsfGY--e---edlk~l~~~LPr~~Q~~LmSATl~dDv~~--LKkL~l~nPviLkl~e~el 236 (569)
T KOG0346|consen 164 VLEYLDSLSFLVVDEADLLLSFGY--E---EDLKKLRSHLPRIYQCFLMSATLSDDVQA--LKKLFLHNPVILKLTEGEL 236 (569)
T ss_pred cchhhhheeeEEechhhhhhhccc--H---HHHHHHHHhCCchhhheeehhhhhhHHHH--HHHHhccCCeEEEeccccC
Confidence 3 55688999999999999994 4 66666777777 67899999999999877 66677788887754322
Q ss_pred --CCceEEEEEecCcchhHHHHHHHHHHhc-CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhh
Q 014134 229 --RPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 305 (430)
Q Consensus 229 --~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~ 305 (430)
..++.+..... ...+++..+..+++-. -.+++|||+|+.+.|..+.-.|.+.|++.++++|.+|.+.|..++++|+
T Consensus 237 ~~~dqL~Qy~v~c-se~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFN 315 (569)
T KOG0346|consen 237 PNPDQLTQYQVKC-SEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFN 315 (569)
T ss_pred CCcccceEEEEEe-ccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhh
Confidence 22333333333 3678888888887753 4668999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEec-----------------------------------cccccccccCceEEEEecCCCCHHHHHHHhccCC
Q 014134 306 SSRKQVVVATV-----------------------------------AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG 350 (430)
Q Consensus 306 ~g~~~vLv~T~-----------------------------------~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~ 350 (430)
.|-++++|||| -.+||||+.+|+.|+|+|+|.++..|+||+||++
T Consensus 316 kG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTa 395 (569)
T KOG0346|consen 316 KGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTA 395 (569)
T ss_pred CcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccc
Confidence 99999999999 3579999999999999999999999999999999
Q ss_pred CCCCCceEEEeeCccchHHHHHHHHhc
Q 014134 351 RDQLPSKSLLYYGMDDRRRMEFILSKN 377 (430)
Q Consensus 351 R~g~~g~~i~~~~~~~~~~~~~~~~~~ 377 (430)
|+++.|.++.|+.+.+..-...+.+.+
T Consensus 396 Rg~n~GtalSfv~P~e~~g~~~le~~~ 422 (569)
T KOG0346|consen 396 RGNNKGTALSFVSPKEEFGKESLESIL 422 (569)
T ss_pred cCCCCCceEEEecchHHhhhhHHHHHH
Confidence 999999999999999876444444444
No 31
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9e-53 Score=365.20 Aligned_cols=359 Identities=19% Similarity=0.216 Sum_probs=297.5
Q ss_pred ccccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcC--CCEEEEcCCCChHHHHhHHhhhcC------CCeEE
Q 014134 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVL 82 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~--~~~lv~a~tGsGKT~~~~~~~l~~------~~~~l 82 (430)
....++|+.|.+.|++++.+.. |+|.+|+.+|..|+|.++.. +|+|.++..|+|||.+|.+.+|.+ .++++
T Consensus 86 lyS~ksFeeL~LkPellkgly~-M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~i 164 (477)
T KOG0332|consen 86 LYSAKSFEELRLKPELLKGLYA-MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCI 164 (477)
T ss_pred ccccccHHhhCCCHHHHhHHHH-hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCce
Confidence 4478899999999999999998 99999999999999999986 799999999999999999999976 67899
Q ss_pred EEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHH---hhhcCCc
Q 014134 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLL 159 (430)
Q Consensus 83 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~---~~~~~~~ 159 (430)
.++||++||.|+.+.+.+.|....+.......+. .. ...... .-.++++||+.+.++.. ......+
T Consensus 165 CLaPtrELA~Q~~eVv~eMGKf~~ita~yair~s--k~-~rG~~i--------~eqIviGTPGtv~Dlm~klk~id~~ki 233 (477)
T KOG0332|consen 165 CLAPTRELAPQTGEVVEEMGKFTELTASYAIRGS--KA-KRGNKL--------TEQIVIGTPGTVLDLMLKLKCIDLEKI 233 (477)
T ss_pred eeCchHHHHHHHHHHHHHhcCceeeeEEEEecCc--cc-ccCCcc--------hhheeeCCCccHHHHHHHHHhhChhhc
Confidence 9999999999999999998866533222221111 00 000111 11228999998888754 3456668
Q ss_pred cEEEEecCcccccc-CCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEec-cCCCCceEEEE
Q 014134 160 NLVAIDEAHCISSW-GHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEV 236 (430)
Q Consensus 160 ~~lViDE~h~~~~~-~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 236 (430)
+++|+||||.+++. |+. ..-.++....| +.|++++|||....+.......+...++..++. .....++....
T Consensus 234 kvfVlDEAD~Mi~tqG~~-----D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQly 308 (477)
T KOG0332|consen 234 KVFVLDEADVMIDTQGFQ-----DQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLY 308 (477)
T ss_pred eEEEecchhhhhhccccc-----ccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhhe
Confidence 89999999999773 432 22234555556 889999999999999998888777777777765 44566777777
Q ss_pred EecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEec
Q 014134 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (430)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (430)
......+.|++.|.++.-...-++.||||.|++.+..++..+.+.|..+.++||+|...+|..+++.|++|+.+|||+|+
T Consensus 309 v~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTn 388 (477)
T KOG0332|consen 309 VLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTN 388 (477)
T ss_pred eeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEec
Confidence 77888899999999987766677899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCceEEEEecCCC------CHHHHHHHhccCCCCCCCceEEEeeCcc-chHHHHHHHHhccCCCCCchh
Q 014134 317 AFGMGIDRKDVRLVCHFNIPK------SMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSKNQSKNSQSFS 386 (430)
Q Consensus 317 ~~~~Gidi~~~~~vi~~~~p~------s~~~~~q~~GR~~R~g~~g~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 386 (430)
+++||+|++.|++||+||+|. +++.|+||+||+||.|+.|.++.+++.. +...++.+.+..........+
T Consensus 389 V~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~ 465 (477)
T KOG0332|consen 389 VCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDP 465 (477)
T ss_pred hhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCC
Confidence 999999999999999999994 7899999999999999999999998766 567888888888666555444
No 32
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-51 Score=371.89 Aligned_cols=370 Identities=21% Similarity=0.263 Sum_probs=271.6
Q ss_pred cccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcC-CCEEEEcCCCChHHHHhHHhhhcC---------------
Q 014134 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK--------------- 77 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~-~~~lv~a~tGsGKT~~~~~~~l~~--------------- 77 (430)
.-.|..|+++++++++|+. +||.+||++|...+|.+..| .|++..|.||||||++|.+|++++
T Consensus 180 vsAW~~l~lp~~iL~aL~~-~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~ 258 (731)
T KOG0347|consen 180 VSAWKNLFLPMEILRALSN-LGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTS 258 (731)
T ss_pred hHHHhcCCCCHHHHHHHHh-cCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHH
Confidence 3457889999999999998 89999999999999999999 699999999999999999999861
Q ss_pred --CC--eEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHH-
Q 014134 78 --PG--IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK- 152 (430)
Q Consensus 78 --~~--~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~- 152 (430)
.. .+||++|||+||.|+.+-+......-.+......++........+....+++ +|+||++++.+..
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~I--------VVATPGRlweli~e 330 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDI--------VVATPGRLWELIEE 330 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCE--------EEecchHHHHHHHh
Confidence 33 4999999999999999888775322222222222222222233333334444 9999999999864
Q ss_pred ----hhhcCCccEEEEecCccccccCCCcHHHHHHHHHHH--hhCCCCcEEEEEcCCCchhHH-----------------
Q 014134 153 ----IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR--NYLPDVPILALTATAAPKVQK----------------- 209 (430)
Q Consensus 153 ----~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~--~~~~~~~~i~~SAT~~~~~~~----------------- 209 (430)
..++..++++|+||+|++.+.|+ |.++-..+..+. ...+..|.+.||||++-....
T Consensus 331 ~n~~l~~~k~vkcLVlDEaDRmvekgh-F~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~ 409 (731)
T KOG0347|consen 331 DNTHLGNFKKVKCLVLDEADRMVEKGH-FEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNA 409 (731)
T ss_pred hhhhhhhhhhceEEEEccHHHHhhhcc-HHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhH
Confidence 23466689999999999999886 665544444333 123467899999997653221
Q ss_pred ---HHHHHhCCC-CCeEEeccCCCCc---eEEEEEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCC
Q 014134 210 ---DVMESLCLQ-NPLVLKSSFNRPN---LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG 282 (430)
Q Consensus 210 ---~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~ 282 (430)
.+...++.. .|.++........ +......+ ...++--.+..++.. -++++|||||++..+..++-.|...+
T Consensus 410 kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C-~~~eKD~ylyYfl~r-yPGrTlVF~NsId~vKRLt~~L~~L~ 487 (731)
T KOG0347|consen 410 KIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIEC-PPLEKDLYLYYFLTR-YPGRTLVFCNSIDCVKRLTVLLNNLD 487 (731)
T ss_pred HHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcC-CccccceeEEEEEee-cCCceEEEechHHHHHHHHHHHhhcC
Confidence 122222222 1233322211100 00000000 000000000111111 35689999999999999999999999
Q ss_pred CcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEee
Q 014134 283 ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362 (430)
Q Consensus 283 ~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~ 362 (430)
++...+|+.|.+++|.+.+++|++....||||||+++||+|||+|.|||||-.|.+.+-|+||.||++|++..|..++++
T Consensus 488 i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~ 567 (731)
T KOG0347|consen 488 IPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLC 567 (731)
T ss_pred CCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchHHHHHHHHhccCCCCC-chhhhHHHHHHh
Q 014134 363 GMDDRRRMEFILSKNQSKNSQ-SFSTRERWLITV 395 (430)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 395 (430)
.+.+...+.++.+.++..+.. +++...+++..+
T Consensus 568 ~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~l 601 (731)
T KOG0347|consen 568 GPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDAL 601 (731)
T ss_pred ChHHhHHHHHHHHHHhhccCCCceeccHHHHHHH
Confidence 999999999999999887654 344444444433
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=9.8e-50 Score=401.19 Aligned_cols=338 Identities=19% Similarity=0.206 Sum_probs=250.7
Q ss_pred CCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC-----CCeEEEEcchHHHHH
Q 014134 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALME 92 (430)
Q Consensus 18 ~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~-----~~~~lil~Pt~~L~~ 92 (430)
-+..+++.+.+.|++ .||.+|+++|.++++.+++|+|+++++|||||||++|.+|++++ +.++||++||++|+.
T Consensus 17 ~~~~l~~~l~~~L~~-~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~ 95 (742)
T TIGR03817 17 WPAWAHPDVVAALEA-AGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAA 95 (742)
T ss_pred CCCcCCHHHHHHHHH-cCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHH
Confidence 345678999999998 79999999999999999999999999999999999999998743 568999999999999
Q ss_pred HHHHHHHHcC---cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHH-HH-----hhhcCCccEEE
Q 014134 93 NQVIGLKEKG---IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KK-----IHSRGLLNLVA 163 (430)
Q Consensus 93 q~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~-~~-----~~~~~~~~~lV 163 (430)
|+.+.+++++ .......+......... +.. . .++ +++||+.+... +. ...++++++||
T Consensus 96 q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~----i~~-~--~~I------ivtTPd~L~~~~L~~~~~~~~~l~~l~~vV 162 (742)
T TIGR03817 96 DQLRAVRELTLRGVRPATYDGDTPTEERRW----ARE-H--ARY------VLTNPDMLHRGILPSHARWARFLRRLRYVV 162 (742)
T ss_pred HHHHHHHHhccCCeEEEEEeCCCCHHHHHH----Hhc-C--CCE------EEEChHHHHHhhccchhHHHHHHhcCCEEE
Confidence 9999999874 33333334333222211 111 1 233 77888766532 11 12367799999
Q ss_pred EecCccccc-cCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecC-
Q 014134 164 IDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD- 240 (430)
Q Consensus 164 iDE~h~~~~-~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 240 (430)
+||+|.+.+ +|..+...+..+.++....+ +.|++++|||+++... ....+.......+.................
T Consensus 163 iDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~--~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~ 240 (742)
T TIGR03817 163 IDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA--AASRLIGAPVVAVTEDGSPRGARTVALWEPP 240 (742)
T ss_pred EeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH--HHHHHcCCCeEEECCCCCCcCceEEEEecCC
Confidence 999999865 23344555666766666554 6789999999998743 233333332223322211111111111111
Q ss_pred ---------------cchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcC--------CCcceeecCCCCHHHH
Q 014134 241 ---------------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--------GISCAAYHAGLNDKAR 297 (430)
Q Consensus 241 ---------------~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~--------~~~~~~~hg~~~~~~r 297 (430)
....+...+..+++. +.++||||+|++.++.++..+++. +..+..+||++++++|
T Consensus 241 ~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR 318 (742)
T TIGR03817 241 LTELTGENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDR 318 (742)
T ss_pred ccccccccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHH
Confidence 112345556666654 568999999999999999988763 5678899999999999
Q ss_pred HHHHHHhhcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCcc--chHHHHHH
Q 014134 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD--DRRRMEFI 373 (430)
Q Consensus 298 ~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~--~~~~~~~~ 373 (430)
..++++|++|++++||||+++++|||+|++++||++++|.+..+|+||+||+||.|+.|.++++...+ |...+...
T Consensus 319 ~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~ 396 (742)
T TIGR03817 319 RELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHP 396 (742)
T ss_pred HHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCH
Confidence 99999999999999999999999999999999999999999999999999999999999999998644 44444433
No 34
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-48 Score=351.74 Aligned_cols=363 Identities=18% Similarity=0.232 Sum_probs=300.7
Q ss_pred ccccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc-----------CCC
Q 014134 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----------KPG 79 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~-----------~~~ 79 (430)
..+...|+.++....|..++.. --|++|+|+|.+++|..+.|++++-.|.||||||.+|++|++- .++
T Consensus 219 ~rpvtsfeh~gfDkqLm~airk-~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gP 297 (731)
T KOG0339|consen 219 PRPVTSFEHFGFDKQLMTAIRK-SEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGP 297 (731)
T ss_pred CCCcchhhhcCchHHHHHHHhh-hhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCC
Confidence 4467788999999999999997 5899999999999999999999999999999999999999862 267
Q ss_pred eEEEEcchHHHHHHHHHHHHHcCcceeE----eCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHH--h
Q 014134 80 IVLVVSPLIALMENQVIGLKEKGIAGEF----LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--I 153 (430)
Q Consensus 80 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~--~ 153 (430)
..+|+|||++||.|++.++++|+....+ ..++...- .....+. . ++.++|+||+++.++.. .
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~---eQ~k~Lk-~--------g~EivVaTPgRlid~VkmKa 365 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKW---EQSKELK-E--------GAEIVVATPGRLIDMVKMKA 365 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHH---HHHHhhh-c--------CCeEEEechHHHHHHHHhhc
Confidence 8999999999999999999998543332 22222221 1122222 1 22229999999999855 4
Q ss_pred hhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEE-eccCCCCce
Q 014134 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL-KSSFNRPNL 232 (430)
Q Consensus 154 ~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 232 (430)
.++.++.+|||||++++.+.| |.+.++.+..-. .|+.|.++||||+...+.......+..+-.++. ........|
T Consensus 366 tn~~rvS~LV~DEadrmfdmG--fe~qVrSI~~hi--rpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dI 441 (731)
T KOG0339|consen 366 TNLSRVSYLVLDEADRMFDMG--FEPQVRSIKQHI--RPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDI 441 (731)
T ss_pred ccceeeeEEEEechhhhhccc--cHHHHHHHHhhc--CCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccch
Confidence 567779999999999999999 776665554322 368999999999999988866666543322222 233445567
Q ss_pred EEEEEecCcchhHHHHHHHHHHhc-CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceE
Q 014134 233 FYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (430)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~v 311 (430)
.+.+........|+..|...|... ..+++|||+.-...+++++..|+..++++..+||++.+.+|.+++..|+.+...|
T Consensus 442 TQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~V 521 (731)
T KOG0339|consen 442 TQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPV 521 (731)
T ss_pred hheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCce
Confidence 777888888889999888877654 5679999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCCCCchhhhHH
Q 014134 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRER 390 (430)
Q Consensus 312 Lv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (430)
||+||++++|+|+|.+..||+||.-.+++.|.||+||+||+|.+|.+++++++.|....-.+.+.+......++..+.+
T Consensus 522 lvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~d 600 (731)
T KOG0339|consen 522 LVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMD 600 (731)
T ss_pred EEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998887766655443
No 35
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.6e-50 Score=352.76 Aligned_cols=345 Identities=20% Similarity=0.351 Sum_probs=267.0
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh--------------cCC
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL--------------AKP 78 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l--------------~~~ 78 (430)
+-++|..+..+..+++.|+. -|+.+|||+|.+.+|.+++|+|++-.|-||||||++|.+|++ ..+
T Consensus 168 PIksF~eMKFP~~~L~~lk~-KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EG 246 (610)
T KOG0341|consen 168 PIKSFKEMKFPKPLLRGLKK-KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEG 246 (610)
T ss_pred chhhhhhccCCHHHHHHHHh-cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCC
Confidence 45667777888889999998 699999999999999999999999999999999999998875 137
Q ss_pred CeEEEEcchHHHHHHHHHHHHHc-------Ccc---eeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHH
Q 014134 79 GIVLVVSPLIALMENQVIGLKEK-------GIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148 (430)
Q Consensus 79 ~~~lil~Pt~~L~~q~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~ 148 (430)
+..||+||+|+||.|+++.+..+ |.. ..+..++.... .........+++ +|+||+++.
T Consensus 247 P~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~------eql~~v~~GvHi------vVATPGRL~ 314 (610)
T KOG0341|consen 247 PYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVR------EQLDVVRRGVHI------VVATPGRLM 314 (610)
T ss_pred CeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHH------HHHHHHhcCeeE------EEcCcchHH
Confidence 88999999999999999877664 111 11111222211 122222223444 999999999
Q ss_pred HHHH--hhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEec
Q 014134 149 KLKK--IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS 225 (430)
Q Consensus 149 ~~~~--~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 225 (430)
+++. ..++.-.+++.+||||++.++|+. ..++.+...|. .+|.++||||++........ -.+-.|+.+..
T Consensus 315 DmL~KK~~sLd~CRyL~lDEADRmiDmGFE-----ddir~iF~~FK~QRQTLLFSATMP~KIQ~FAk--SALVKPvtvNV 387 (610)
T KOG0341|consen 315 DMLAKKIMSLDACRYLTLDEADRMIDMGFE-----DDIRTIFSFFKGQRQTLLFSATMPKKIQNFAK--SALVKPVTVNV 387 (610)
T ss_pred HHHHHhhccHHHHHHhhhhhHHHHhhccch-----hhHHHHHHHHhhhhheeeeeccccHHHHHHHH--hhcccceEEec
Confidence 9865 344555778999999999999954 56666677665 68899999999998766333 33455555544
Q ss_pred cCCC---CceEEEEEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHH
Q 014134 226 SFNR---PNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 302 (430)
Q Consensus 226 ~~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~ 302 (430)
.... -++...+.+. ..+.|+..+++-+.+. ..+++|||.....++.+.++|--.|..+..+||+-++++|...++
T Consensus 388 GRAGAAsldViQevEyV-kqEaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~ 465 (610)
T KOG0341|consen 388 GRAGAASLDVIQEVEYV-KQEAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIE 465 (610)
T ss_pred ccccccchhHHHHHHHH-HhhhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHH
Confidence 3221 1122222221 1245666677777664 458999999999999999999999999999999999999999999
Q ss_pred HhhcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchH----HHHHHHHhcc
Q 014134 303 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR----RMEFILSKNQ 378 (430)
Q Consensus 303 ~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~----~~~~~~~~~~ 378 (430)
.|+.|+.+|||+||+++.|+|+|++.+|||||+|...++|+||+||+||.|+.|.+.+|++.+..+ .++.++.+.+
T Consensus 466 afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~Eak 545 (610)
T KOG0341|consen 466 AFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAK 545 (610)
T ss_pred HHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999887432 3344444444
Q ss_pred C
Q 014134 379 S 379 (430)
Q Consensus 379 ~ 379 (430)
.
T Consensus 546 Q 546 (610)
T KOG0341|consen 546 Q 546 (610)
T ss_pred c
Confidence 3
No 36
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.2e-47 Score=390.43 Aligned_cols=378 Identities=20% Similarity=0.234 Sum_probs=278.3
Q ss_pred cCCCCChHHHHHHHHHHhcCCccchHHHHHHHHH-HHcCCCEEEEcCCCChHHHHhHHhhhc---CCCeEEEEcchHHHH
Q 014134 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALM 91 (430)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~-l~~~~~~lv~a~tGsGKT~~~~~~~l~---~~~~~lil~Pt~~L~ 91 (430)
.|+++++++.+.+.+.+ .||.+|+|+|.++++. +..++|++++||||+|||++|.++++. ++.+++|++|+++|+
T Consensus 2 ~~~~l~lp~~~~~~l~~-~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa 80 (737)
T PRK02362 2 KIAELPLPEGVIEFYEA-EGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALA 80 (737)
T ss_pred ChhhcCCCHHHHHHHHh-CCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHH
Confidence 46778899999999998 7999999999999998 678999999999999999999998875 478999999999999
Q ss_pred HHHHHHHHHc---CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh--hhcCCccEEEEec
Q 014134 92 ENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNLVAIDE 166 (430)
Q Consensus 92 ~q~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~--~~~~~~~~lViDE 166 (430)
.|+++.|+.+ |..+...++...... ..+...+++|+||+++..+... .....++++|+||
T Consensus 81 ~q~~~~~~~~~~~g~~v~~~tGd~~~~~---------------~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE 145 (737)
T PRK02362 81 SEKFEEFERFEELGVRVGISTGDYDSRD---------------EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDE 145 (737)
T ss_pred HHHHHHHHHhhcCCCEEEEEeCCcCccc---------------cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEEC
Confidence 9999999886 445444443321110 0111223489999998887653 3356789999999
Q ss_pred CccccccCCCcHHHHHH-HHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEE--------
Q 014134 167 AHCISSWGHDFRPSYRK-LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR-------- 237 (430)
Q Consensus 167 ~h~~~~~~~~~~~~~~~-l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 237 (430)
+|.+.+.+ +.+.+.. +..+....++.|++++|||+++. .++..|+.... +.....+..+...+.
T Consensus 146 ~H~l~d~~--rg~~le~il~rl~~~~~~~qii~lSATl~n~--~~la~wl~~~~---~~~~~rpv~l~~~v~~~~~~~~~ 218 (737)
T PRK02362 146 VHLIDSAN--RGPTLEVTLAKLRRLNPDLQVVALSATIGNA--DELADWLDAEL---VDSEWRPIDLREGVFYGGAIHFD 218 (737)
T ss_pred ccccCCCc--chHHHHHHHHHHHhcCCCCcEEEEcccCCCH--HHHHHHhCCCc---ccCCCCCCCCeeeEecCCeeccc
Confidence 99998644 3333333 33344445688999999999874 44566664321 111111111110000
Q ss_pred ------ecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCC-----------------------------
Q 014134 238 ------YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG----------------------------- 282 (430)
Q Consensus 238 ------~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~----------------------------- 282 (430)
...........+.+.+. .++++||||+|++.|+.+++.|....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 296 (737)
T PRK02362 219 DSQREVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSK 296 (737)
T ss_pred cccccCCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccH
Confidence 00011233344444443 46789999999999999888776431
Q ss_pred -------CcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEE----ec-----CCCCHHHHHHHh
Q 014134 283 -------ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN-----IPKSMEAFYQES 346 (430)
Q Consensus 283 -------~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~----~~-----~p~s~~~~~q~~ 346 (430)
.+++++||+|++.+|..+++.|++|.++|||||+++++|+|+|.+++||. |+ .|.+..+|.||+
T Consensus 297 ~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~ 376 (737)
T PRK02362 297 DLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMA 376 (737)
T ss_pred HHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHh
Confidence 36789999999999999999999999999999999999999999999996 55 588999999999
Q ss_pred ccCCCCCCC--ceEEEeeCccc-h-HHHHHHH-HhccCCCCCc--hhhhHHHHHHhhhhccccccceeecCcceeeeec
Q 014134 347 GRAGRDQLP--SKSLLYYGMDD-R-RRMEFIL-SKNQSKNSQS--FSTRERWLITVKVLDVAGKRFSRVLGNRYLYHYV 418 (430)
Q Consensus 347 GR~~R~g~~--g~~i~~~~~~~-~-~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (430)
||+||.|.. |.++++....+ . +.++.++ ....+.++.. ...+.+.+..+...+.+.+..+...+.+|+|.+.
T Consensus 377 GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~ 455 (737)
T PRK02362 377 GRAGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYAT 455 (737)
T ss_pred hcCCCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHh
Confidence 999999864 89999987653 2 3345554 3444555555 3457788888888888899999888888888773
No 37
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-48 Score=339.56 Aligned_cols=353 Identities=20% Similarity=0.292 Sum_probs=284.0
Q ss_pred cccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC------CCeEEEEcch
Q 014134 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~------~~~~lil~Pt 87 (430)
..+|++++|.+++++.+.. +||++|+.+|+.|+..+.+|.|+.+++++|+|||.+|.+++++. ...+++++|+
T Consensus 25 vdsfddm~L~e~LLrgiy~-yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPt 103 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYA-YGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPT 103 (397)
T ss_pred hhhhhhcCCCHHHHhHHHh-hccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcch
Confidence 5689999999999999998 99999999999999999999999999999999999999999865 5689999999
Q ss_pred HHHHHHHHHHHHHcCcceeEeCCCchHHHHHH-HHhhhhcCCCceeEEEECCccccChhHHHHHHHhhh--cCCccEEEE
Q 014134 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTK-IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS--RGLLNLVAI 164 (430)
Q Consensus 88 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~--~~~~~~lVi 164 (430)
++|+.|..+....+|-................ -...+... .++++++||++..++.+... ...+.++|+
T Consensus 104 reLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~--------~~hivvGTpgrV~dml~~~~l~~~~iKmfvl 175 (397)
T KOG0327|consen 104 RELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKD--------KPHIVVGTPGRVFDMLNRGSLSTDGIKMFVL 175 (397)
T ss_pred HHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhcc--------CceeecCCchhHHHhhccccccccceeEEee
Confidence 99999999888887544322221111111110 01111111 22339999999999876543 445889999
Q ss_pred ecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccC---CCCceEEEEEecC
Q 014134 165 DEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNLFYEVRYKD 240 (430)
Q Consensus 165 DE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 240 (430)
||+|.++..| |. ..+..+.+..| +.|++++|||.+..+..--..+. .+|+.+.... ....+...+....
T Consensus 176 DEaDEmLs~g--fk---dqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~--~~pv~i~vkk~~ltl~gikq~~i~v~ 248 (397)
T KOG0327|consen 176 DEADEMLSRG--FK---DQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFM--REPVRILVKKDELTLEGIKQFYINVE 248 (397)
T ss_pred cchHhhhccc--hH---HHHHHHHHHcCcchhheeecccCcHHHHHHHHHhc--cCceEEEecchhhhhhheeeeeeecc
Confidence 9999999988 55 55556666665 78999999999999877444444 4555444322 2233434443333
Q ss_pred cchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccc
Q 014134 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (430)
Q Consensus 241 ~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 320 (430)
.. +|+..+.++.+ .-...+||||+++.+..+...|...+..+..+||.|.+.+|..++..|+.|..+|||+|+.+++
T Consensus 249 k~-~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~ar 325 (397)
T KOG0327|consen 249 KE-EKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLAR 325 (397)
T ss_pred cc-ccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeecccccc
Confidence 33 38888888888 4567899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCCCCch
Q 014134 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385 (430)
Q Consensus 321 Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (430)
|+|+..++.||+|++|...++|+||+||+||.|.+|.++.++.+++...++.+.+.......+.+
T Consensus 326 gidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p 390 (397)
T KOG0327|consen 326 GIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELP 390 (397)
T ss_pred ccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecc
Confidence 99999999999999999999999999999999999999999999999999999877766544444
No 38
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-47 Score=370.50 Aligned_cols=360 Identities=20% Similarity=0.293 Sum_probs=288.0
Q ss_pred ccccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc-----------CCC
Q 014134 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----------KPG 79 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~-----------~~~ 79 (430)
..+...|...+++..++..+++ +||.+|+++|.+|||+++.|+++|.+|.||||||++|++|++. .++
T Consensus 361 pkpv~sW~q~gl~~~il~tlkk-l~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGP 439 (997)
T KOG0334|consen 361 PKPVTSWTQCGLSSKILETLKK-LGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGP 439 (997)
T ss_pred CcccchHhhCCchHHHHHHHHH-hcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCc
Confidence 3466788899999999999976 9999999999999999999999999999999999999999973 278
Q ss_pred eEEEEcchHHHHHHHHHHHHHcCccee--EeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHH--Hhhh
Q 014134 80 IVLVVSPLIALMENQVIGLKEKGIAGE--FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHS 155 (430)
Q Consensus 80 ~~lil~Pt~~L~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~--~~~~ 155 (430)
.+||++||++|+.|+.+++..|..... +........... ....+.. +++++|+||++..++. +...
T Consensus 440 i~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~-qiaelkR---------g~eIvV~tpGRmiD~l~~n~gr 509 (997)
T KOG0334|consen 440 IALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQ-QIAELKR---------GAEIVVCTPGRMIDILCANSGR 509 (997)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHH-HHHHHhc---------CCceEEeccchhhhhHhhcCCc
Confidence 999999999999999999888632221 111111111111 1112221 1333999999888774 3333
Q ss_pred cCC---ccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEec---cCCC
Q 014134 156 RGL---LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNR 229 (430)
Q Consensus 156 ~~~---~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 229 (430)
..+ +.++|+||+|++.+.| |.|....| +.+..|..|++++|||++..+.......+. .|+.+.. +...
T Consensus 510 vtnlrR~t~lv~deaDrmfdmg--fePq~~~I--i~nlrpdrQtvlfSatfpr~m~~la~~vl~--~Pveiiv~~~svV~ 583 (997)
T KOG0334|consen 510 VTNLRRVTYLVLDEADRMFDMG--FEPQITRI--LQNLRPDRQTVLFSATFPRSMEALARKVLK--KPVEIIVGGRSVVC 583 (997)
T ss_pred cccccccceeeechhhhhheec--cCcccchH--HhhcchhhhhhhhhhhhhHHHHHHHHHhhc--CCeeEEEccceeEe
Confidence 434 4599999999999988 66665443 333456889999999999987665555555 4443322 2223
Q ss_pred CceEEEEEecCcchhHHHHHHHHHHhc-CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCC
Q 014134 230 PNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (430)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 308 (430)
..+...+......+.|+..|.+++... ...++||||.+...|+.+...|.+.|+.+..+||+.++.+|..+++.|+++.
T Consensus 584 k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~ 663 (997)
T KOG0334|consen 584 KEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGV 663 (997)
T ss_pred ccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccC
Confidence 455566666666788999999988764 4779999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCCCCchhh
Q 014134 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387 (430)
Q Consensus 309 ~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (430)
+.+||+|+++++|+|++.+.+||+|++|...++|+||+||+||+|+.|.|++|.++++.++...|.+.+.......+..
T Consensus 664 ~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~ 742 (997)
T KOG0334|consen 664 VNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKL 742 (997)
T ss_pred ceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchH
Confidence 9999999999999999999999999999999999999999999999999999999998888888888885554444433
No 39
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-46 Score=336.78 Aligned_cols=354 Identities=19% Similarity=0.239 Sum_probs=258.6
Q ss_pred ccCCCCChHHHHHHH----------HHHhcCCccchHHHHHHHHHHH---------cCCCEEEEcCCCChHHHHhHHhhh
Q 014134 15 QKNKPLHEKEALVKL----------LRWHFGHAQFRDKQLDAIQAVL---------SGRDCFCLMPTGGGKSMCYQIPAL 75 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~----------l~~~~g~~~~~~~Q~~~~~~l~---------~~~~~lv~a~tGsGKT~~~~~~~l 75 (430)
..|+.++.+..+... +.. +++.+..|+|...+|+++ ..+|+.|.||||||||++|.+|++
T Consensus 127 q~~s~l~~se~k~~~d~lea~~~q~l~k-~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIV 205 (620)
T KOG0350|consen 127 QIFSVLGKSEMKNLEDTLEATIDQLLVK-MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIV 205 (620)
T ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHH-hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHH
Confidence 344445555544444 776 799999999999999996 257999999999999999999997
Q ss_pred cC-------CCeEEEEcchHHHHHHHHHHHHHcCcceeEe--CCCchHHHHHHHHhhhhcCC-CceeEEEECCccccChh
Q 014134 76 AK-------PGIVLVVSPLIALMENQVIGLKEKGIAGEFL--SSTQTMQVKTKIYEDLDSGK-PSLRLLYVTPELTATPG 145 (430)
Q Consensus 76 ~~-------~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~v~T~~ 145 (430)
+- ..+++|++||++|+.|+++.|..+.....+. ..............-..... ..++| +|+||+
T Consensus 206 Q~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DI------lVaTPG 279 (620)
T KOG0350|consen 206 QLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDI------LVATPG 279 (620)
T ss_pred HHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccce------EEcCch
Confidence 42 4689999999999999999999974332222 22222222222222222111 12333 999999
Q ss_pred HHHHHHH---hhhcCCccEEEEecCccccccCCCcHHHHHHHHHH----------------------------Hhh----
Q 014134 146 FMSKLKK---IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL----------------------------RNY---- 190 (430)
Q Consensus 146 ~~~~~~~---~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~----------------------------~~~---- 190 (430)
++.+.+. ...+..++++|+||||++++.. |...+..+... ...
T Consensus 280 RLVDHl~~~k~f~Lk~LrfLVIDEADRll~qs--fQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~ 357 (620)
T KOG0350|consen 280 RLVDHLNNTKSFDLKHLRFLVIDEADRLLDQS--FQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKL 357 (620)
T ss_pred HHHHhccCCCCcchhhceEEEechHHHHHHHH--HHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCc
Confidence 8888755 4457779999999999997633 22222111111 111
Q ss_pred CCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEecc------CCCCceEEEEEecCcchhHHHHHHHHHHhcCCceEEEE
Q 014134 191 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------FNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264 (430)
Q Consensus 191 ~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf 264 (430)
.|....+++|||+...-.. ...+....|..+... +..+....+.........+-..+..++...+..++|+|
T Consensus 358 ~~~l~kL~~satLsqdP~K--l~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf 435 (620)
T KOG0350|consen 358 YPPLWKLVFSATLSQDPSK--LKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCF 435 (620)
T ss_pred CchhHhhhcchhhhcChHH--HhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEE
Confidence 2234478888888876544 444555555433322 12222222222222223445567778888788899999
Q ss_pred eCccccHHHHHHHHH----cCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCCCCHH
Q 014134 265 CLERTTCDELSAYLS----AGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSME 340 (430)
Q Consensus 265 ~~s~~~~~~l~~~l~----~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~ 340 (430)
+++...+.+++..|+ ..+.++-.++|.++.+.|.+.++.|+.|++++|||+|+++||+|+.+++.||+||+|.+..
T Consensus 436 ~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~k 515 (620)
T KOG0350|consen 436 VNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDK 515 (620)
T ss_pred ecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhh
Confidence 999999999998887 3456677799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccC
Q 014134 341 AFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (430)
Q Consensus 341 ~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~ 379 (430)
.|+||+||++|+|+.|.|++++...+...+.++++....
T Consensus 516 tyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 516 TYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred HHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 999999999999999999999999999999999988766
No 40
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=6.9e-47 Score=349.27 Aligned_cols=341 Identities=19% Similarity=0.232 Sum_probs=280.2
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC------CCeEEEEcc
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~------~~~~lil~P 86 (430)
....|+.+.+..+++..|++ -+|..|+++|..|||.++.+-|+||+|..|+|||++|.+.+++. ...++||+|
T Consensus 23 ~~~~fe~l~l~r~vl~glrr-n~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~P 101 (980)
T KOG4284|consen 23 CTPGFEQLALWREVLLGLRR-NAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTP 101 (980)
T ss_pred CCCCHHHHHHHHHHHHHHHh-hcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEec
Confidence 56788899999999999998 59999999999999999999999999999999999998777643 578999999
Q ss_pred hHHHHHHHHHHHHHcC-----cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHH--hhhcCCc
Q 014134 87 LIALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLL 159 (430)
Q Consensus 87 t~~L~~q~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~--~~~~~~~ 159 (430)
||+++-|+.+.+...+ ..+.++.++....... +.. ..|.++|+||+++..+.+ ..+.+.+
T Consensus 102 TREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~-----~rl--------k~~rIvIGtPGRi~qL~el~~~n~s~v 168 (980)
T KOG4284|consen 102 TREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDL-----IRL--------KQTRIVIGTPGRIAQLVELGAMNMSHV 168 (980)
T ss_pred chhhhhHHHHHHHHhcccccCcceEEEecCchhhhhh-----hhh--------hhceEEecCchHHHHHHHhcCCCccce
Confidence 9999999999988864 3455555544332221 111 112239999999999865 4556779
Q ss_pred cEEEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCce---EEE
Q 014134 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNL---FYE 235 (430)
Q Consensus 160 ~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 235 (430)
+++|+||||.+.+.+. |. ..+.-++..+| ..|++++|||.+.+....+..++ .+|..++.+...+.+ ...
T Consensus 169 rlfVLDEADkL~~t~s-fq---~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~m--rdp~lVr~n~~d~~L~GikQy 242 (980)
T KOG4284|consen 169 RLFVLDEADKLMDTES-FQ---DDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFM--RDPALVRFNADDVQLFGIKQY 242 (980)
T ss_pred eEEEeccHHhhhchhh-HH---HHHHHHHHhcchhheeeEEeccCchhHHHHHHHHh--cccceeecccCCceeechhhe
Confidence 9999999999988443 44 55566666677 67899999999999888777665 566666665555443 233
Q ss_pred EEecCcc-------hhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCC
Q 014134 236 VRYKDLL-------DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (430)
Q Consensus 236 ~~~~~~~-------~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 308 (430)
+...... ..++..|-++++..+..+.||||+....|+-++..|+..|+.|-+++|.|++++|..+++.++.-.
T Consensus 243 v~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~ 322 (980)
T KOG4284|consen 243 VVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFR 322 (980)
T ss_pred eeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhce
Confidence 3332222 247777888888888889999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccch-HHHHHH
Q 014134 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR-RRMEFI 373 (430)
Q Consensus 309 ~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~-~~~~~~ 373 (430)
++|||+||..+||||-+++++||+.|+|.+.++|.||+||+||.|..|.+++|+..... +.+..+
T Consensus 323 ~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 323 VRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred EEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999876644 665555
No 41
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-45 Score=326.30 Aligned_cols=352 Identities=43% Similarity=0.760 Sum_probs=315.9
Q ss_pred HHHHHHHhcCCccc-hHHHHHHHHHHHcC-CCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCc
Q 014134 26 LVKLLRWHFGHAQF-RDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (430)
Q Consensus 26 ~~~~l~~~~g~~~~-~~~Q~~~~~~l~~~-~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 103 (430)
.-..|+..||+.++ ++.|.+|+..+..+ +|+.|++|||+||+++|.+|.|-.+...|++.|..+|..+..+-+..+.+
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiDHL~~LKV 86 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQIDHLKRLKV 86 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHHHHHhcCC
Confidence 45678888998865 68999999998876 69999999999999999999998888999999999999999999999888
Q ss_pred ceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHH
Q 014134 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 183 (430)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~ 183 (430)
.+.-+.+-.....+..+..++....+..++++.+|+.-+|.++-..+....+.+.+.++|+||||....||++|++.|-.
T Consensus 87 p~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~ 166 (641)
T KOG0352|consen 87 PCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLT 166 (641)
T ss_pred chhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhh
Confidence 87777777777888889999999999999999999999998877777777777779999999999999999999999999
Q ss_pred HHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEE-eccCCCCceEEEEEecCcchhHHHHHHHHHHhc------
Q 014134 184 LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL-KSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN------ 256 (430)
Q Consensus 184 l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------ 256 (430)
+..+....++++.+++|||.++.+..++...+.+.+|+-+ .....+.++++.+..+....+-+..|.+.-...
T Consensus 167 LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~ 246 (641)
T KOG0352|consen 167 LGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEK 246 (641)
T ss_pred hhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhh
Confidence 9999999999999999999999999999999999988754 455667788888777766666555555544321
Q ss_pred -------CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceE
Q 014134 257 -------GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329 (430)
Q Consensus 257 -------~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~ 329 (430)
..+..||||.|++.|++++-.|...|++...+|.++...+|..+-+.|.++++.|+++|-..++|+|-|+|.+
T Consensus 247 ~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRF 326 (641)
T KOG0352|consen 247 ASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRF 326 (641)
T ss_pred hhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeE
Confidence 2456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhc
Q 014134 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (430)
Q Consensus 330 vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~ 377 (430)
|||.++|.|..-|.|-.||+||.|....|-+++..+|...++-+++..
T Consensus 327 ViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~e 374 (641)
T KOG0352|consen 327 VIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSGE 374 (641)
T ss_pred EEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhhH
Confidence 999999999999999999999999999999999999999888876544
No 42
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-46 Score=344.36 Aligned_cols=360 Identities=18% Similarity=0.223 Sum_probs=278.5
Q ss_pred CChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC-----------CCeEEEEcchH
Q 014134 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVLVVSPLI 88 (430)
Q Consensus 20 ~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~-----------~~~~lil~Pt~ 88 (430)
...++.++..+.. .||..|+|+|.+|+|.++.+++++.|||||+|||++|.+|++.+ +.+++|+.||+
T Consensus 141 ~~~~~~ll~nl~~-~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptr 219 (593)
T KOG0344|consen 141 YSMNKRLLENLQE-LGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTR 219 (593)
T ss_pred hhhcHHHHHhHhh-CCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchH
Confidence 3456777888888 79999999999999999999999999999999999999999743 46899999999
Q ss_pred HHHHHHHHHHHHcCccee--EeCCCchHH-HHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh----hcCCccE
Q 014134 89 ALMENQVIGLKEKGIAGE--FLSSTQTMQ-VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH----SRGLLNL 161 (430)
Q Consensus 89 ~L~~q~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~----~~~~~~~ 161 (430)
+|+.|+++++.++..... ......... ............ -..++++||.++....... .+..+.+
T Consensus 220 eLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~--------k~dili~TP~ri~~~~~~~~~~idl~~V~~ 291 (593)
T KOG0344|consen 220 ELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDE--------KYDILISTPMRIVGLLGLGKLNIDLSKVEW 291 (593)
T ss_pred HHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHH--------HHHHHhcCHHHHHHHhcCCCccchhheeee
Confidence 999999999999753210 000000000 000000000001 1122899999887776653 5667889
Q ss_pred EEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccC---CCCceEEEEEe
Q 014134 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNLFYEVRY 238 (430)
Q Consensus 162 lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 238 (430)
+|+||+|++.+. ..|......+...+.. |+..+-+||||.+..+.+.... ...+...+..+. ....+.+....
T Consensus 292 lV~dEaD~lfe~-~~f~~Qla~I~sac~s-~~i~~a~FSat~~~~VEE~~~~--i~~~~~~vivg~~~sa~~~V~QelvF 367 (593)
T KOG0344|consen 292 LVVDEADLLFEP-EFFVEQLADIYSACQS-PDIRVALFSATISVYVEEWAEL--IKSDLKRVIVGLRNSANETVDQELVF 367 (593)
T ss_pred EeechHHhhhCh-hhHHHHHHHHHHHhcC-cchhhhhhhccccHHHHHHHHH--hhccceeEEEecchhHhhhhhhhhee
Confidence 999999999886 1266555555544444 6888999999999988773333 333333332221 22344555566
Q ss_pred cCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHH-HcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc
Q 014134 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYL-SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (430)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l-~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~ 317 (430)
......++-.+.+++..--..+++||+.+.+.|.+|+..| .-.++.+..+||+.++.+|+..+++|+.|++++||||++
T Consensus 368 ~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdl 447 (593)
T KOG0344|consen 368 CGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDL 447 (593)
T ss_pred eecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhh
Confidence 6666788889999998866779999999999999999999 566889999999999999999999999999999999999
Q ss_pred ccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCCCCchhhhHHHHHHhh
Q 014134 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERWLITVK 396 (430)
Q Consensus 318 ~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (430)
++||+|+.++++||+||.|.+..+|+||+||+||+|+.|.+++||+..|..+++.+.+.....-- .++.|...++
T Consensus 448 l~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~----evpe~~m~~~ 522 (593)
T KOG0344|consen 448 LARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGC----EVPEKIMGIK 522 (593)
T ss_pred hhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCC----cchHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999887765322 2345555444
No 43
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=7.2e-45 Score=369.16 Aligned_cols=333 Identities=20% Similarity=0.217 Sum_probs=246.9
Q ss_pred CCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcC------CCEEEEcCCCChHHHHhHHhhh---cCCCeEEEEcchHH
Q 014134 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIA 89 (430)
Q Consensus 19 ~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~------~~~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt~~ 89 (430)
+++........+.+.|+|. ||+.|.+|++.+.++ .|.+++||||+|||.+|+.+++ ..+.+++|++||++
T Consensus 433 ~~~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~ 511 (926)
T TIGR00580 433 AFPPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTL 511 (926)
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHH
Confidence 3445566777777779995 999999999999874 6899999999999999988876 45789999999999
Q ss_pred HHHHHHHHHHHc----CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEe
Q 014134 90 LMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAID 165 (430)
Q Consensus 90 L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViD 165 (430)
||.|+++.++++ +.....+.+.............+.....+ + +|+||..+ .....+.+++++|+|
T Consensus 512 LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~d--I------VIGTp~ll---~~~v~f~~L~llVID 580 (926)
T TIGR00580 512 LAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKID--I------LIGTHKLL---QKDVKFKDLGLLIID 580 (926)
T ss_pred HHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCce--E------EEchHHHh---hCCCCcccCCEEEee
Confidence 999999998874 34444555544444444444444444333 3 88888533 233456778999999
Q ss_pred cCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCC-CCceEEEEEecCcchh
Q 014134 166 EAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVRYKDLLDD 244 (430)
Q Consensus 166 E~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 244 (430)
|+|++ |.. ....+....++.++++||||+.+.+... ...+..++..+...+. +..+...+.... ...
T Consensus 581 Eahrf---gv~------~~~~L~~~~~~~~vL~~SATpiprtl~~--~l~g~~d~s~I~~~p~~R~~V~t~v~~~~-~~~ 648 (926)
T TIGR00580 581 EEQRF---GVK------QKEKLKELRTSVDVLTLSATPIPRTLHM--SMSGIRDLSIIATPPEDRLPVRTFVMEYD-PEL 648 (926)
T ss_pred ccccc---chh------HHHHHHhcCCCCCEEEEecCCCHHHHHH--HHhcCCCcEEEecCCCCccceEEEEEecC-HHH
Confidence 99994 321 1222333445789999999998876553 3334455555544332 223333322221 111
Q ss_pred HHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcC--CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccc
Q 014134 245 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (430)
Q Consensus 245 ~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 322 (430)
....+...+. .+++++||||+++.++.+++.|++. +.++..+||+|++.+|+.++++|++|+.+|||||+++++|+
T Consensus 649 i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GI 726 (926)
T TIGR00580 649 VREAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGI 726 (926)
T ss_pred HHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccc
Confidence 1223333333 4678999999999999999999884 67899999999999999999999999999999999999999
Q ss_pred cccCceEEEEecCCC-CHHHHHHHhccCCCCCCCceEEEeeCcc------chHHHHHHHHhc
Q 014134 323 DRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD------DRRRMEFILSKN 377 (430)
Q Consensus 323 di~~~~~vi~~~~p~-s~~~~~q~~GR~~R~g~~g~~i~~~~~~------~~~~~~~~~~~~ 377 (430)
|+|++++||+++.|. +..+|.||+||+||.|+.|.|++++.+. ..++++.+.+..
T Consensus 727 DIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~~ 788 (926)
T TIGR00580 727 DIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEFS 788 (926)
T ss_pred ccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHhh
Confidence 999999999999875 6889999999999999999999998543 345666665543
No 44
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.6e-44 Score=361.48 Aligned_cols=354 Identities=51% Similarity=0.853 Sum_probs=327.4
Q ss_pred HHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCc
Q 014134 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (430)
Q Consensus 24 ~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 103 (430)
++....+...||+..+++-|.+++...+.|++.++.+|||.||++||.+|++-.++..|+|.|..+|+..+...+.+.++
T Consensus 250 ~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~~I 329 (941)
T KOG0351|consen 250 KELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKKGI 329 (941)
T ss_pred hHHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhcCc
Confidence 45677778889999999999999999999999999999999999999999998888999999999999999999988999
Q ss_pred ceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHH-HHHhhhcCCccEEEEecCccccccCCCcHHHHH
Q 014134 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK-LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182 (430)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~-~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~ 182 (430)
....+.+.+.......++..+......+++++.+|+.++.-+.+.. +......+.+.++|+||||....||++|++.|.
T Consensus 330 ~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk 409 (941)
T KOG0351|consen 330 PACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYK 409 (941)
T ss_pred ceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHH
Confidence 9999999999988888999998888899999999998777665553 344445555889999999999999999999999
Q ss_pred HHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCcchhHHHHHHHHHHhcCCceEE
Q 014134 183 KLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262 (430)
Q Consensus 183 ~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i 262 (430)
.+..+...+|..+++++|||.+..+..++...+...++.++..+++++++++.+..+.........+...-...+...+|
T Consensus 410 ~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~I 489 (941)
T KOG0351|consen 410 RLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGI 489 (941)
T ss_pred HHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999886555555555555556788999
Q ss_pred EEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCCCCHHHH
Q 014134 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAF 342 (430)
Q Consensus 263 Vf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~ 342 (430)
|||.++..|+.++..|+..++.+..+|++|++.+|..+-..|..++++|++||=+.++|||-|+|..||||.+|.|.+.|
T Consensus 490 IYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~Y 569 (941)
T KOG0351|consen 490 IYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGY 569 (941)
T ss_pred EEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCceEEEeeCccchHHHHHHHHhc
Q 014134 343 YQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (430)
Q Consensus 343 ~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~ 377 (430)
.|-+||+||.|....|++|+...|...++.++..-
T Consensus 570 YQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 570 YQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred HHhccccCcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 99999999999999999999999999999998887
No 45
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=4.2e-44 Score=367.51 Aligned_cols=321 Identities=22% Similarity=0.289 Sum_probs=227.2
Q ss_pred hHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc------------CCCeEEEEcchHH
Q 014134 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------------KPGIVLVVSPLIA 89 (430)
Q Consensus 22 ~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~------------~~~~~lil~Pt~~ 89 (430)
+++.+.+.+++ +|..|+|+|.++++.+++|+|++++||||||||++|.+|+++ .+.++||++|+++
T Consensus 18 l~~~v~~~~~~--~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtra 95 (876)
T PRK13767 18 LRPYVREWFKE--KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRA 95 (876)
T ss_pred cCHHHHHHHHH--ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHH
Confidence 55777777776 788999999999999999999999999999999999999873 1357999999999
Q ss_pred HHHHHHHHHHH-----------c-----CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh
Q 014134 90 LMENQVIGLKE-----------K-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153 (430)
Q Consensus 90 L~~q~~~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~ 153 (430)
|++|+++.+.. + +......+++.......... ....++ +|+||+.+..+...
T Consensus 96 La~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l----~~~p~I--------lVtTPE~L~~ll~~ 163 (876)
T PRK13767 96 LNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKML----KKPPHI--------LITTPESLAILLNS 163 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHH----hCCCCE--------EEecHHHHHHHhcC
Confidence 99999876542 1 22334444444333222111 112222 89999988766532
Q ss_pred h----hcCCccEEEEecCcccccc--CCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCC------CCCe
Q 014134 154 H----SRGLLNLVAIDEAHCISSW--GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL------QNPL 221 (430)
Q Consensus 154 ~----~~~~~~~lViDE~h~~~~~--~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~------~~~~ 221 (430)
. .+..+++||+||+|.+.+. |..+...+..+..+. -++.|++++|||+++. ..+..++.. ..+.
T Consensus 164 ~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~--~~~~q~IglSATl~~~--~~va~~L~~~~~~~~~r~~ 239 (876)
T PRK13767 164 PKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELA--GGEFVRIGLSATIEPL--EEVAKFLVGYEDDGEPRDC 239 (876)
T ss_pred hhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhc--CCCCeEEEEecccCCH--HHHHHHhcCccccCCCCce
Confidence 2 3567999999999999753 332333334443333 1467899999999874 333444432 1122
Q ss_pred -EEeccCCCCceEEEEEe----------cCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcC------CCc
Q 014134 222 -VLKSSFNRPNLFYEVRY----------KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------GIS 284 (430)
Q Consensus 222 -~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~------~~~ 284 (430)
++..... ......... ..........+.+++++ ++++||||||++.|+.++..|++. +.+
T Consensus 240 ~iv~~~~~-k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~ 316 (876)
T PRK13767 240 EIVDARFV-KPFDIKVISPVDDLIHTPAEEISEALYETLHELIKE--HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDN 316 (876)
T ss_pred EEEccCCC-ccceEEEeccCccccccccchhHHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhchhhccccc
Confidence 2222211 111111110 00011233344444443 568999999999999999999873 467
Q ss_pred ceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCC-CCceEEEeeC
Q 014134 285 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ-LPSKSLLYYG 363 (430)
Q Consensus 285 ~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g-~~g~~i~~~~ 363 (430)
+..+||++++++|..+++.|++|++++||||+++++|||+|++++||+++.|.+...|+||+||+||.+ ..+.+.++..
T Consensus 317 i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 317 IGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred eeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 999999999999999999999999999999999999999999999999999999999999999999874 3445555543
No 46
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.5e-44 Score=366.77 Aligned_cols=374 Identities=20% Similarity=0.199 Sum_probs=264.7
Q ss_pred cCCCCChHHHHHHHHHHhcCCccchHHHHHHHHH-HHcCCCEEEEcCCCChHHHHhHHhhhc----CCCeEEEEcchHHH
Q 014134 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIAL 90 (430)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~-l~~~~~~lv~a~tGsGKT~~~~~~~l~----~~~~~lil~Pt~~L 90 (430)
.|+.+++++.+.+.+++ .||.+|+|+|.++++. +.+|+|++++||||||||++|.++++. .+.++||++|+++|
T Consensus 2 ~~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aL 80 (720)
T PRK00254 2 KVDELRVDERIKRVLKE-RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKAL 80 (720)
T ss_pred cHHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHH
Confidence 35678899999999998 7999999999999986 788999999999999999999988763 46799999999999
Q ss_pred HHHHHHHHHHc---CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh--hhcCCccEEEEe
Q 014134 91 MENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNLVAID 165 (430)
Q Consensus 91 ~~q~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~--~~~~~~~~lViD 165 (430)
+.|+++.+..+ +..+...++...... . .+..++++|+||+++..+... ....++++||+|
T Consensus 81 a~q~~~~~~~~~~~g~~v~~~~Gd~~~~~--~-------------~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViD 145 (720)
T PRK00254 81 AEEKYREFKDWEKLGLRVAMTTGDYDSTD--E-------------WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVAD 145 (720)
T ss_pred HHHHHHHHHHHhhcCCEEEEEeCCCCCch--h-------------hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEc
Confidence 99999888753 455544444332211 0 011123389999988877653 235679999999
Q ss_pred cCccccccCCCcHHHHHHHHHHHhhC-CCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEE------e
Q 014134 166 EAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR------Y 238 (430)
Q Consensus 166 E~h~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 238 (430)
|+|.+.+.+ +...+ ..+.... ++.|++++|||+++. .++..|+.... +.....+..+...+. .
T Consensus 146 E~H~l~~~~--rg~~l---e~il~~l~~~~qiI~lSATl~n~--~~la~wl~~~~---~~~~~rpv~l~~~~~~~~~~~~ 215 (720)
T PRK00254 146 EIHLIGSYD--RGATL---EMILTHMLGRAQILGLSATVGNA--EELAEWLNAEL---VVSDWRPVKLRKGVFYQGFLFW 215 (720)
T ss_pred CcCccCCcc--chHHH---HHHHHhcCcCCcEEEEEccCCCH--HHHHHHhCCcc---ccCCCCCCcceeeEecCCeeec
Confidence 999998754 33333 3333333 468999999999874 55566665331 111111111110000 0
Q ss_pred cCc-----chhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcC--------------------------------
Q 014134 239 KDL-----LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG-------------------------------- 281 (430)
Q Consensus 239 ~~~-----~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~-------------------------------- 281 (430)
.+. .......+.+.++ .++++||||+|++.|+.++..|...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 293 (720)
T PRK00254 216 EDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKA 293 (720)
T ss_pred cCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHH
Confidence 110 1111233444444 3668999999999998877666321
Q ss_pred -CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEE-------ecCCC-CHHHHHHHhccCCCC
Q 014134 282 -GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH-------FNIPK-SMEAFYQESGRAGRD 352 (430)
Q Consensus 282 -~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~-------~~~p~-s~~~~~q~~GR~~R~ 352 (430)
..++.++||+|++++|..+++.|++|.++|||||+++++|+|+|.+++||. ++.|. +..+|.||+||+||.
T Consensus 294 l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~ 373 (720)
T PRK00254 294 LRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRP 373 (720)
T ss_pred HhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCC
Confidence 235889999999999999999999999999999999999999999999994 34433 578999999999997
Q ss_pred C--CCceEEEeeCccc-hHHHHHHHHhcc-CCCC--CchhhhHHHHHHhhhhccccccceeecCcceeeee
Q 014134 353 Q--LPSKSLLYYGMDD-RRRMEFILSKNQ-SKNS--QSFSTRERWLITVKVLDVAGKRFSRVLGNRYLYHY 417 (430)
Q Consensus 353 g--~~g~~i~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (430)
| ..|.++++...++ .+.++.+....- ...+ ...+.+.+.+......+.+.+..+.+.+.+|+|.|
T Consensus 374 ~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~ 444 (720)
T PRK00254 374 KYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYA 444 (720)
T ss_pred CcCCCceEEEEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHH
Confidence 6 5789999987765 344544443211 1111 12344566777777777778888888888888777
No 47
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=1.6e-43 Score=308.73 Aligned_cols=363 Identities=41% Similarity=0.766 Sum_probs=327.0
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHH
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALME 92 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~ 92 (430)
.....+++|++++..+.|++.|..++++|.|..++...+.+++.++..|||-||+++|.+|++...+.+|++||...|++
T Consensus 69 aawdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~adg~alvi~plislme 148 (695)
T KOG0353|consen 69 AAWDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADGFALVICPLISLME 148 (695)
T ss_pred cccccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChh-HHHHHHHhhhcCCccEEEEecCcccc
Q 014134 93 NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCIS 171 (430)
Q Consensus 93 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~-~~~~~~~~~~~~~~~~lViDE~h~~~ 171 (430)
...-.++++|+....+...........+...+.......++++.+|+-++... +..++......+.+.++-+||+|...
T Consensus 149 dqil~lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccs 228 (695)
T KOG0353|consen 149 DQILQLKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCS 228 (695)
T ss_pred HHHHHHHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehh
Confidence 99999999999988888777766666677777777788999888888766544 55556667777889999999999999
Q ss_pred ccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCcc-hhHHHHHH
Q 014134 172 SWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL-DDAYADLC 250 (430)
Q Consensus 172 ~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 250 (430)
.||++|++.+..+.-+.++|++++++++|||..+.+..+....++......++.+++++++.+.+..++.. ++-++.+.
T Consensus 229 qwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~ 308 (695)
T KOG0353|consen 229 QWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIA 308 (695)
T ss_pred hhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988889999999999999999887654 45667777
Q ss_pred HHHHh-cCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceE
Q 014134 251 SVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329 (430)
Q Consensus 251 ~~l~~-~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~ 329 (430)
.+++. ..+...||||-+++.|++++..|+.+|+....+|..|.+.+|.-+-+.|..|+++|+|+|-..++|+|-|++++
T Consensus 309 k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrf 388 (695)
T KOG0353|consen 309 KLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRF 388 (695)
T ss_pred HHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeE
Confidence 77764 45778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHH-------------------------------------------HhccCCCCCCCceEEEeeCccc
Q 014134 330 VCHFNIPKSMEAFYQ-------------------------------------------ESGRAGRDQLPSKSLLYYGMDD 366 (430)
Q Consensus 330 vi~~~~p~s~~~~~q-------------------------------------------~~GR~~R~g~~g~~i~~~~~~~ 366 (430)
|||.++|.|.++|.| -.||+||.+.+..|+.++.-.|
T Consensus 389 vihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~d 468 (695)
T KOG0353|consen 389 VIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFAD 468 (695)
T ss_pred EEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHH
Confidence 999999999999999 6799999999999999998776
Q ss_pred hHHHHHHHH
Q 014134 367 RRRMEFILS 375 (430)
Q Consensus 367 ~~~~~~~~~ 375 (430)
.-....+..
T Consensus 469 ifk~ssmv~ 477 (695)
T KOG0353|consen 469 IFKISSMVQ 477 (695)
T ss_pred HHhHHHHHH
Confidence 555444433
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=7.2e-43 Score=350.37 Aligned_cols=328 Identities=20% Similarity=0.256 Sum_probs=243.9
Q ss_pred HHHHHHHHHHhcCCccchHHHHHHHHHHHcC------CCEEEEcCCCChHHHHhHHhhh---cCCCeEEEEcchHHHHHH
Q 014134 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMEN 93 (430)
Q Consensus 23 ~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~------~~~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt~~L~~q 93 (430)
...+.+.+.+.++|. ||++|.++++.+.++ .+.+++||||||||++|+++++ ..+.+++|++||++||.|
T Consensus 247 ~~~~~~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q 325 (681)
T PRK10917 247 DGELLKKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQ 325 (681)
T ss_pred ChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHH
Confidence 356666777779995 999999999999876 4799999999999999998885 457899999999999999
Q ss_pred HHHHHHHc----CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCcc
Q 014134 94 QVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (430)
Q Consensus 94 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~ 169 (430)
+++.++++ +......+++............+.....++ +|+||+++.. ...+.+++++|+||+|+
T Consensus 326 ~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~I--------vVgT~~ll~~---~v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 326 HYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADI--------VIGTHALIQD---DVEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCE--------EEchHHHhcc---cchhcccceEEEechhh
Confidence 99998874 466777777776666666666555554444 8899886543 23456789999999999
Q ss_pred ccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEecc-CCCCceEEEEEecCcchhHHHH
Q 014134 170 ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPNLFYEVRYKDLLDDAYAD 248 (430)
Q Consensus 170 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 248 (430)
+.. .. ...+.....+.++++||||+.+.... ....+..+...+... ..+..+...+.........++.
T Consensus 395 fg~---~q------r~~l~~~~~~~~iL~~SATp~prtl~--~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~ 463 (681)
T PRK10917 395 FGV---EQ------RLALREKGENPHVLVMTATPIPRTLA--MTAYGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYER 463 (681)
T ss_pred hhH---HH------HHHHHhcCCCCCEEEEeCCCCHHHHH--HHHcCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHH
Confidence 532 11 12233333467899999999886544 222333333333322 2233344443333333333344
Q ss_pred HHHHHHhcCCceEEEEeCccc--------cHHHHHHHHHcC--CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccc
Q 014134 249 LCSVLKANGDTCAIVYCLERT--------TCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (430)
Q Consensus 249 l~~~l~~~~~~~~iVf~~s~~--------~~~~l~~~l~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 318 (430)
+...+. .+.+++|||+.++ .++.+++.|.+. +.++..+||+|++.+|..++++|++|+.+|||||+++
T Consensus 464 i~~~~~--~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vi 541 (681)
T PRK10917 464 IREEIA--KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVI 541 (681)
T ss_pred HHHHHH--cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcce
Confidence 444442 4678999999654 456677777765 4689999999999999999999999999999999999
Q ss_pred cccccccCceEEEEecCCC-CHHHHHHHhccCCCCCCCceEEEeeCcc----chHHHHHHHH
Q 014134 319 GMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD----DRRRMEFILS 375 (430)
Q Consensus 319 ~~Gidi~~~~~vi~~~~p~-s~~~~~q~~GR~~R~g~~g~~i~~~~~~----~~~~~~~~~~ 375 (430)
++|+|+|++++||+++.|. +.+.+.||+||+||.|..|.|++++... ..++++.+.+
T Consensus 542 e~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~ 603 (681)
T PRK10917 542 EVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRE 603 (681)
T ss_pred eeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHH
Confidence 9999999999999999987 6789999999999999999999999532 3455555544
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=4.4e-43 Score=363.55 Aligned_cols=369 Identities=20% Similarity=0.187 Sum_probs=256.2
Q ss_pred CChHHHHHHHHHHhcCCccchHHHHHHHHHHHcC------CCEEEEcCCCChHHHHhHHhhh---cCCCeEEEEcchHHH
Q 014134 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIAL 90 (430)
Q Consensus 20 ~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~------~~~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt~~L 90 (430)
+.......+.+.+.|+| .||+.|.+|++.++++ .|.+++|+||+|||.+++.+++ .++.+++|++||++|
T Consensus 583 ~~~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eL 661 (1147)
T PRK10689 583 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLL 661 (1147)
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHH
Confidence 44445566666666999 5999999999999886 7999999999999998876653 568899999999999
Q ss_pred HHHHHHHHHHc----CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEec
Q 014134 91 MENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDE 166 (430)
Q Consensus 91 ~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE 166 (430)
|.|+++.+++. ++......+.............+.....++ +|+||..+. ......+++++|+||
T Consensus 662 A~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dI--------VVgTp~lL~---~~v~~~~L~lLVIDE 730 (1147)
T PRK10689 662 AQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDI--------LIGTHKLLQ---SDVKWKDLGLLIVDE 730 (1147)
T ss_pred HHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCE--------EEECHHHHh---CCCCHhhCCEEEEec
Confidence 99999998873 234445555555544444444444333333 888886442 223456789999999
Q ss_pred CccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCC-CceEEEEEecCcchhH
Q 014134 167 AHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR-PNLFYEVRYKDLLDDA 245 (430)
Q Consensus 167 ~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 245 (430)
+|++ |.. ....+....++.++++||||+.+.+...... ...++..+...... ..+......... ...
T Consensus 731 ahrf---G~~------~~e~lk~l~~~~qvLl~SATpiprtl~l~~~--gl~d~~~I~~~p~~r~~v~~~~~~~~~-~~~ 798 (1147)
T PRK10689 731 EHRF---GVR------HKERIKAMRADVDILTLTATPIPRTLNMAMS--GMRDLSIIATPPARRLAVKTFVREYDS-LVV 798 (1147)
T ss_pred hhhc---chh------HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHh--hCCCcEEEecCCCCCCCceEEEEecCc-HHH
Confidence 9996 321 1222333445889999999998877653333 34556555543322 222222222221 112
Q ss_pred HHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcC--CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecccccccc
Q 014134 246 YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (430)
Q Consensus 246 ~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gid 323 (430)
...+...+. .+++++||||+++.++.+++.|++. +.++..+||+|++++|+.++.+|++|+++|||||+++++|+|
T Consensus 799 k~~il~el~--r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGID 876 (1147)
T PRK10689 799 REAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGID 876 (1147)
T ss_pred HHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccc
Confidence 222222222 3568999999999999999999887 678999999999999999999999999999999999999999
Q ss_pred ccCceEEEEecCC-CCHHHHHHHhccCCCCCCCceEEEeeCcc------chHHHHHHHHhccCCCCCchhh-hHHHHHHh
Q 014134 324 RKDVRLVCHFNIP-KSMEAFYQESGRAGRDQLPSKSLLYYGMD------DRRRMEFILSKNQSKNSQSFST-RERWLITV 395 (430)
Q Consensus 324 i~~~~~vi~~~~p-~s~~~~~q~~GR~~R~g~~g~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 395 (430)
+|++++||..+.+ .+..+|+||+||+||.|+.|.|++++... ..++++.+.+............ --+.+-.-
T Consensus 877 IP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~rg~g 956 (1147)
T PRK10689 877 IPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG 956 (1147)
T ss_pred cccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCc
Confidence 9999999966553 36788999999999999999999987543 3455555555443222211111 11223334
Q ss_pred hhhccccccceeecCccee
Q 014134 396 KVLDVAGKRFSRVLGNRYL 414 (430)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~ 414 (430)
++++..|+++-+..++...
T Consensus 957 ~~~g~~q~g~~~~~g~~~y 975 (1147)
T PRK10689 957 ELLGEEQSGQMETIGFSLY 975 (1147)
T ss_pred cCCCCccCCCccccCHHHH
Confidence 4555556665555554443
No 50
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.3e-43 Score=356.83 Aligned_cols=378 Identities=20% Similarity=0.181 Sum_probs=261.3
Q ss_pred cCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc---CCCeEEEEcchHHHHH
Q 014134 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALME 92 (430)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~---~~~~~lil~Pt~~L~~ 92 (430)
+++++++++.+.+.+.. .||. ++++|.++++.+.++++++++||||||||+++.++++. .+.+++|++|+++|+.
T Consensus 2 ~~~~~~l~~~~~~~~~~-~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~ 79 (674)
T PRK01172 2 KISDLGYDDEFLNLFTG-NDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAM 79 (674)
T ss_pred cHhhcCCCHHHHHHHhh-CCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHH
Confidence 45678899999999987 6887 99999999999999999999999999999999888764 4788999999999999
Q ss_pred HHHHHHHHc---CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh--hhcCCccEEEEecC
Q 014134 93 NQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNLVAIDEA 167 (430)
Q Consensus 93 q~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~--~~~~~~~~lViDE~ 167 (430)
|+++++.++ |.......+...... . .+...+++|+||+++..+... ..+.+++++|+||+
T Consensus 80 q~~~~~~~l~~~g~~v~~~~G~~~~~~--~-------------~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEa 144 (674)
T PRK01172 80 EKYEELSRLRSLGMRVKISIGDYDDPP--D-------------FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEI 144 (674)
T ss_pred HHHHHHHHHhhcCCeEEEEeCCCCCCh--h-------------hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecc
Confidence 999998764 444444333221110 0 011223389999988877543 23567899999999
Q ss_pred ccccccCCCcHHHHHHHHH-HHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEe-----cCc
Q 014134 168 HCISSWGHDFRPSYRKLSS-LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY-----KDL 241 (430)
Q Consensus 168 h~~~~~~~~~~~~~~~l~~-~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 241 (430)
|.+.+.+ +.+.+..+.. +....++.|++++|||+++. .++..|+.... +........+...... .+.
T Consensus 145 H~l~d~~--rg~~le~ll~~~~~~~~~~riI~lSATl~n~--~~la~wl~~~~---~~~~~r~vpl~~~i~~~~~~~~~~ 217 (674)
T PRK01172 145 HIIGDED--RGPTLETVLSSARYVNPDARILALSATVSNA--NELAQWLNASL---IKSNFRPVPLKLGILYRKRLILDG 217 (674)
T ss_pred hhccCCC--ccHHHHHHHHHHHhcCcCCcEEEEeCccCCH--HHHHHHhCCCc---cCCCCCCCCeEEEEEecCeeeecc
Confidence 9997644 3333333322 22233578999999999864 44566664321 1111111111111110 000
Q ss_pred chhHHHHHHHHHHh--cCCceEEEEeCccccHHHHHHHHHcC-------------------------CCcceeecCCCCH
Q 014134 242 LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG-------------------------GISCAAYHAGLND 294 (430)
Q Consensus 242 ~~~~~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~-------------------------~~~~~~~hg~~~~ 294 (430)
.......+..++.+ ..++++||||++++.++.+++.|.+. ..++..+||++++
T Consensus 218 ~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~ 297 (674)
T PRK01172 218 YERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSN 297 (674)
T ss_pred cccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCH
Confidence 00001112222222 24678999999999999999888653 1257889999999
Q ss_pred HHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecC---------CCCHHHHHHHhccCCCCCC--CceEEEeeC
Q 014134 295 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI---------PKSMEAFYQESGRAGRDQL--PSKSLLYYG 363 (430)
Q Consensus 295 ~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~---------p~s~~~~~q~~GR~~R~g~--~g~~i~~~~ 363 (430)
++|..+++.|++|.++|||||+++++|+|+|+..+|| .+. |.+..+|.||+||+||.|. .|.+++++.
T Consensus 298 ~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~ 376 (674)
T PRK01172 298 EQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAA 376 (674)
T ss_pred HHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEec
Confidence 9999999999999999999999999999999865555 332 5689999999999999985 577888765
Q ss_pred ccc-hHHHHHHH-HhccCCCCCchhhh--HHHHHHhhhhccccccceeecCcceeeeec
Q 014134 364 MDD-RRRMEFIL-SKNQSKNSQSFSTR--ERWLITVKVLDVAGKRFSRVLGNRYLYHYV 418 (430)
Q Consensus 364 ~~~-~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (430)
..+ .+.+++++ ....+.++...... ..........+.+.+..+...+.+|+|.+.
T Consensus 377 ~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~ 435 (674)
T PRK01172 377 SPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAI 435 (674)
T ss_pred CcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHh
Confidence 543 56666666 34444444443322 223335567777778888888887777764
No 51
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.7e-45 Score=320.89 Aligned_cols=350 Identities=19% Similarity=0.225 Sum_probs=282.8
Q ss_pred cccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC-------CCeEEEEcc
Q 014134 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------PGIVLVVSP 86 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~-------~~~~lil~P 86 (430)
+-.|+++++...+.+++.+ -||.+|+|+|++.+|.++++++++..|-||+|||.+|++|++++ +.++++++|
T Consensus 20 ~g~fqsmgL~~~v~raI~k-kg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilsp 98 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHK-KGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSP 98 (529)
T ss_pred CCCccccCCCHHHHHHHHH-hhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccC
Confidence 4568999999999999998 59999999999999999999999999999999999999999854 569999999
Q ss_pred hHHHHHHHHHHHHHcCcceeEeCCCchHH-HHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHH--hhhcCCccEEE
Q 014134 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQ-VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVA 163 (430)
Q Consensus 87 t~~L~~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~--~~~~~~~~~lV 163 (430)
|++|+.|+.+..+.+|.......+..... .....+..+ ..++++ +++||+++.++.. ...+..+++||
T Consensus 99 treLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l-~~npDi--------i~ATpgr~~h~~vem~l~l~sveyVV 169 (529)
T KOG0337|consen 99 TRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILL-NENPDI--------IIATPGRLLHLGVEMTLTLSSVEYVV 169 (529)
T ss_pred cHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHh-ccCCCE--------EEecCceeeeeehheeccccceeeee
Confidence 99999999999999865444333311111 111111111 112223 8889998877733 34577799999
Q ss_pred EecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEecc--CCCCceEEEEEecC
Q 014134 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS--FNRPNLFYEVRYKD 240 (430)
Q Consensus 164 iDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 240 (430)
|||+|++.++|++ .++.++....| ..|.++||||++..... +...+..+|..++.+ ..............
T Consensus 170 fdEadrlfemgfq-----eql~e~l~rl~~~~QTllfSatlp~~lv~--fakaGl~~p~lVRldvetkise~lk~~f~~~ 242 (529)
T KOG0337|consen 170 FDEADRLFEMGFQ-----EQLHEILSRLPESRQTLLFSATLPRDLVD--FAKAGLVPPVLVRLDVETKISELLKVRFFRV 242 (529)
T ss_pred ehhhhHHHhhhhH-----HHHHHHHHhCCCcceEEEEeccCchhhHH--HHHccCCCCceEEeehhhhcchhhhhheeee
Confidence 9999999999965 66777777777 67999999999998777 444566667666522 12222222222333
Q ss_pred cchhHHHHHHHHHHhc-CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecccc
Q 014134 241 LLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (430)
Q Consensus 241 ~~~~~~~~l~~~l~~~-~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 319 (430)
....+...|+.++... +.++++||+.+..+++.+...|...|..+-.++|.+++..|..-...|+.++..+||.|++++
T Consensus 243 ~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaa 322 (529)
T KOG0337|consen 243 RKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAA 322 (529)
T ss_pred ccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhh
Confidence 3467788888888764 346799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCC
Q 014134 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (430)
Q Consensus 320 ~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~ 380 (430)
||+|+|-.+.||+||+|.+..-|+||+||+.|+|+.|.++.++.+++..++-.+...+...
T Consensus 323 RG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~ 383 (529)
T KOG0337|consen 323 RGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRP 383 (529)
T ss_pred ccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCc
Confidence 9999999999999999999999999999999999999999999999988877776655443
No 52
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.6e-42 Score=344.22 Aligned_cols=315 Identities=19% Similarity=0.243 Sum_probs=229.4
Q ss_pred HHHHHHHHHhcCCccchHHHHHHHHHHHcC------CCEEEEcCCCChHHHHhHHhhh---cCCCeEEEEcchHHHHHHH
Q 014134 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQ 94 (430)
Q Consensus 24 ~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~------~~~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt~~L~~q~ 94 (430)
......+.+.++| +||+.|.++++.+.++ .+.+++||||||||.+|+++++ ..+.+++|++||++||.|+
T Consensus 222 ~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~ 300 (630)
T TIGR00643 222 EELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQH 300 (630)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHH
Confidence 3444445455899 6999999999999875 3689999999999999988875 4578999999999999999
Q ss_pred HHHHHHc----CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccc
Q 014134 95 VIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (430)
Q Consensus 95 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~ 170 (430)
++.++++ +......+++............+.....++ +|+||+.+.. ...+.+++++|+||+|++
T Consensus 301 ~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~I--------iVgT~~ll~~---~~~~~~l~lvVIDEaH~f 369 (630)
T TIGR00643 301 YNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHL--------VVGTHALIQE---KVEFKRLALVIIDEQHRF 369 (630)
T ss_pred HHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCE--------EEecHHHHhc---cccccccceEEEechhhc
Confidence 9998874 566777777766665555555555544444 8899986543 334567899999999995
Q ss_pred cccCCCcHHHHHHHHHHHhhCC---CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEec-cCCCCceEEEEEecCcchhHH
Q 014134 171 SSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLDDAY 246 (430)
Q Consensus 171 ~~~~~~~~~~~~~l~~~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 246 (430)
.. ..+ ..+....+ +.++++||||+.+..... ......+...+.. ...+..+.............+
T Consensus 370 g~---~qr------~~l~~~~~~~~~~~~l~~SATp~prtl~l--~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~~~~~ 438 (630)
T TIGR00643 370 GV---EQR------KKLREKGQGGFTPHVLVMSATPIPRTLAL--TVYGDLDTSIIDELPPGRKPITTVLIKHDEKDIVY 438 (630)
T ss_pred cH---HHH------HHHHHhcccCCCCCEEEEeCCCCcHHHHH--HhcCCcceeeeccCCCCCCceEEEEeCcchHHHHH
Confidence 32 111 22333333 678999999988765432 2222222222221 112223333332222222222
Q ss_pred HHHHHHHHhcCCceEEEEeCccc--------cHHHHHHHHHcC--CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEec
Q 014134 247 ADLCSVLKANGDTCAIVYCLERT--------TCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (430)
Q Consensus 247 ~~l~~~l~~~~~~~~iVf~~s~~--------~~~~l~~~l~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (430)
..+.+.+. .+.+++|||+..+ .++.+++.|.+. +..+..+||+|++++|..+++.|++|+.+|||||+
T Consensus 439 ~~i~~~l~--~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~ 516 (630)
T TIGR00643 439 EFIEEEIA--KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT 516 (630)
T ss_pred HHHHHHHH--hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc
Confidence 22333222 4678999998763 456777777753 67899999999999999999999999999999999
Q ss_pred cccccccccCceEEEEecCCC-CHHHHHHHhccCCCCCCCceEEEeeC
Q 014134 317 AFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYG 363 (430)
Q Consensus 317 ~~~~Gidi~~~~~vi~~~~p~-s~~~~~q~~GR~~R~g~~g~~i~~~~ 363 (430)
++++|+|+|++++||+++.|. +.+.|.||+||+||.|..|.|++++.
T Consensus 517 vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 517 VIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred eeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 999999999999999999986 78899999999999999999999983
No 53
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=4e-42 Score=337.64 Aligned_cols=323 Identities=24% Similarity=0.305 Sum_probs=250.9
Q ss_pred ChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC-----------CCeEEEEcchHH
Q 014134 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVLVVSPLIA 89 (430)
Q Consensus 21 ~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~-----------~~~~lil~Pt~~ 89 (430)
.++|.+.+.+++. |..||+.|.+|+|.+.+|+|+++.||||||||.++.+|++.. +..+||++|.|+
T Consensus 7 ~l~~~v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 7 ILDPRVREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKA 84 (814)
T ss_pred hcCHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHH
Confidence 4678899999983 899999999999999999999999999999999999998732 257999999999
Q ss_pred HHHHHHHHHHH----cCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHH----hhhcCCccE
Q 014134 90 LMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK----IHSRGLLNL 161 (430)
Q Consensus 90 L~~q~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~----~~~~~~~~~ 161 (430)
|.+++.+.+.. +|..+.+.+++.+...+... .....+| +++||+.+.-++. ...+.++++
T Consensus 85 Ln~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~------~~~PPdI------LiTTPEsL~lll~~~~~r~~l~~vr~ 152 (814)
T COG1201 85 LNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKM------LKNPPHI------LITTPESLAILLNSPKFRELLRDVRY 152 (814)
T ss_pred HHHHHHHHHHHHHHHcCCccceecCCCChHHhhhc------cCCCCcE------EEeChhHHHHHhcCHHHHHHhcCCcE
Confidence 99999988765 57777777776665544332 1222444 7777776666543 234667999
Q ss_pred EEEecCccccc--cCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCC-Ce-EEeccCCC-CceEEEE
Q 014134 162 VAIDEAHCISS--WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN-PL-VLKSSFNR-PNLFYEV 236 (430)
Q Consensus 162 lViDE~h~~~~--~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~-~~~~~~~~-~~~~~~~ 236 (430)
||+||+|.+.+ +|.+..-.+.++. ...++.|.|++|||..+. ..+.+++.... +. ++...... ..+....
T Consensus 153 VIVDEiHel~~sKRG~~Lsl~LeRL~---~l~~~~qRIGLSATV~~~--~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~ 227 (814)
T COG1201 153 VIVDEIHALAESKRGVQLALSLERLR---ELAGDFQRIGLSATVGPP--EEVAKFLVGFGDPCEIVDVSAAKKLEIKVIS 227 (814)
T ss_pred EEeehhhhhhccccchhhhhhHHHHH---hhCcccEEEeehhccCCH--HHHHHHhcCCCCceEEEEcccCCcceEEEEe
Confidence 99999999964 5655554444444 444488999999999976 44567776554 33 33332222 2222222
Q ss_pred EecC------cchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCC-CcceeecCCCCHHHHHHHHHHhhcCCc
Q 014134 237 RYKD------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG-ISCAAYHAGLNDKARSSVLDDWISSRK 309 (430)
Q Consensus 237 ~~~~------~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~-~~~~~~hg~~~~~~r~~~~~~f~~g~~ 309 (430)
...+ .....+..+.++++++. .+|||+||+..++.++..|++.+ ..+..|||+++.+.|..++++|++|+.
T Consensus 228 p~~~~~~~~~~~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~l 305 (814)
T COG1201 228 PVEDLIYDEELWAALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGEL 305 (814)
T ss_pred cCCccccccchhHHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCc
Confidence 2221 12456677788887754 79999999999999999999986 789999999999999999999999999
Q ss_pred eEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCC-CCCceEEEeeCc
Q 014134 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD-QLPSKSLLYYGM 364 (430)
Q Consensus 310 ~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~-g~~g~~i~~~~~ 364 (430)
+++|||+.++-|||+..++.||+++.|.++..++||+||+|+. |....++++...
T Consensus 306 ravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 306 KAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred eEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 9999999999999999999999999999999999999999965 555677777655
No 54
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.1e-41 Score=330.52 Aligned_cols=384 Identities=18% Similarity=0.213 Sum_probs=292.7
Q ss_pred ChHHHHHHHHHHhcCCccchHHHHHHHHHHHcC-CCEEEEcCCCChHHHHhHHhhhc-------------CCCeEEEEcc
Q 014134 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA-------------KPGIVLVVSP 86 (430)
Q Consensus 21 ~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~-~~~lv~a~tGsGKT~~~~~~~l~-------------~~~~~lil~P 86 (430)
...|++-+ +..|+|..++.+|+.++|.+... .|+++|||||+|||..|+++++. ...+++|++|
T Consensus 95 sdld~~~r--k~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaP 172 (1230)
T KOG0952|consen 95 SDLDDVGR--KGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAP 172 (1230)
T ss_pred Eecchhhh--hhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEec
Confidence 33344444 34589999999999999999865 69999999999999999999873 3678999999
Q ss_pred hHHHHHHHHHHHHH----cCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHH-----hhhcC
Q 014134 87 LIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-----IHSRG 157 (430)
Q Consensus 87 t~~L~~q~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~-----~~~~~ 157 (430)
+++||.++++.|.+ +|+.+..++++......... ..++ +|+||+++.-.-+ ..-.+
T Consensus 173 mKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~tei~---------~tqi------iVTTPEKwDvvTRk~~~d~~l~~ 237 (1230)
T KOG0952|consen 173 MKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTEIA---------DTQI------IVTTPEKWDVVTRKSVGDSALFS 237 (1230)
T ss_pred hHHHHHHHHHHHhhhcccccceEEEecCcchhhHHHHH---------hcCE------EEecccceeeeeeeeccchhhhh
Confidence 99999999988766 57777777766644333211 1334 7777775543311 22244
Q ss_pred CccEEEEecCccccc-cCCCcHHHHHHHHHHHh-hCCCCcEEEEEcCCCchhHHHHHHHhCCC---CCeEEeccCCCCce
Q 014134 158 LLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRN-YLPDVPILALTATAAPKVQKDVMESLCLQ---NPLVLKSSFNRPNL 232 (430)
Q Consensus 158 ~~~~lViDE~h~~~~-~~~~~~~~~~~l~~~~~-~~~~~~~i~~SAT~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 232 (430)
.+++||+||+|.+-+ +|+..+..+.+..+... .....+++++|||+|+- .++..++..+ ....+...+.+..+
T Consensus 238 ~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~--eDvA~fL~vn~~~glfsFd~~yRPvpL 315 (1230)
T KOG0952|consen 238 LVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNY--EDVARFLRVNPYAGLFSFDQRYRPVPL 315 (1230)
T ss_pred heeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCH--HHHHHHhcCCCccceeeecccccccce
Confidence 588999999999965 57766666655443333 33477899999999986 4556666654 22233444444444
Q ss_pred EEEEEecCcc----------hhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCC--------------------
Q 014134 233 FYEVRYKDLL----------DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG-------------------- 282 (430)
Q Consensus 233 ~~~~~~~~~~----------~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~-------------------- 282 (430)
...+...... +-..+.+.+.+. .+.+++|||.++..+...++.|.+..
T Consensus 316 ~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~e 393 (1230)
T KOG0952|consen 316 TQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKE 393 (1230)
T ss_pred eeeEEeeecccchhhhhhHHHHHHHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHH
Confidence 3333221111 123344555554 47799999999999988888886521
Q ss_pred ---CcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEE----EecCC------CCHHHHHHHhccC
Q 014134 283 ---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----HFNIP------KSMEAFYQESGRA 349 (430)
Q Consensus 283 ---~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi----~~~~p------~s~~~~~q~~GR~ 349 (430)
.+..++|.||...+|..+.+.|..|.++||+||.++++|+|+|+--++| .||.. .+.-+.+|..|||
T Consensus 394 lf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRA 473 (1230)
T KOG0952|consen 394 LFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRA 473 (1230)
T ss_pred HHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhcc
Confidence 2567899999999999999999999999999999999999999665555 23332 2577899999999
Q ss_pred CCCC--CCceEEEeeCccchHHHHHHHHhccCCCCCchhhhHHHHHHhhhhccccccceeecCcceeeeeccccccCC
Q 014134 350 GRDQ--LPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERWLITVKVLDVAGKRFSRVLGNRYLYHYVKTHAMPA 425 (430)
Q Consensus 350 ~R~g--~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 425 (430)
||.+ ..|.++++.+.+..+.+..++..-.+.+++....+.+.++++..++.+.+--+++-|.+|+|-|+|++.+|-
T Consensus 474 GRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~ 551 (1230)
T KOG0952|consen 474 GRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPM 551 (1230)
T ss_pred CCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChH
Confidence 9975 579999999999999999999999999999999999999999999999999999999999999999999984
No 55
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.2e-40 Score=303.00 Aligned_cols=330 Identities=23% Similarity=0.316 Sum_probs=255.6
Q ss_pred CCCCChHHHHHHHHHHhcCCccchHHHHHHHHH-HHcCCCEEEEcCCCChHHHHhHHhhh----cCCCeEEEEcchHHHH
Q 014134 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALM 91 (430)
Q Consensus 17 ~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~-l~~~~~~lv~a~tGsGKT~~~~~~~l----~~~~~~lil~Pt~~L~ 91 (430)
...+++++.+.+.|+. .|++.+.|.|..+++. +++|+|.++.++|+||||++..++-+ ..+.+.|+++|..+||
T Consensus 196 vdeLdipe~fk~~lk~-~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALA 274 (830)
T COG1202 196 VDELDIPEKFKRMLKR-EGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALA 274 (830)
T ss_pred ccccCCcHHHHHHHHh-cCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhh
Confidence 3568999999999998 7999999999999988 67899999999999999998877654 4488999999999999
Q ss_pred HHHHHHHHH----cCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh-hhcCCccEEEEec
Q 014134 92 ENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-HSRGLLNLVAIDE 166 (430)
Q Consensus 92 ~q~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~-~~~~~~~~lViDE 166 (430)
+|.+++|+. +|....+..+............ .....+.+| +|+|.+-+..++.. ..+++++.|||||
T Consensus 275 NQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~--~~t~~dADI------IVGTYEGiD~lLRtg~~lgdiGtVVIDE 346 (830)
T COG1202 275 NQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVV--VDTSPDADI------IVGTYEGIDYLLRTGKDLGDIGTVVIDE 346 (830)
T ss_pred cchHHHHHHHhhcccceEEEEechhhhcccCCccc--cCCCCCCcE------EEeechhHHHHHHcCCcccccceEEeee
Confidence 999999877 4444433332221111111000 112223333 88998877777765 6688899999999
Q ss_pred Cccccc--cCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCcchh
Q 014134 167 AHCISS--WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDD 244 (430)
Q Consensus 167 ~h~~~~--~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (430)
+|.+.+ +|+..... +.++...+|++|+|++|||+.+. ..+...++.. .+..+..+..+..+........+
T Consensus 347 iHtL~deERG~RLdGL---I~RLr~l~~~AQ~i~LSATVgNp--~elA~~l~a~---lV~y~~RPVplErHlvf~~~e~e 418 (830)
T COG1202 347 IHTLEDEERGPRLDGL---IGRLRYLFPGAQFIYLSATVGNP--EELAKKLGAK---LVLYDERPVPLERHLVFARNESE 418 (830)
T ss_pred eeeccchhcccchhhH---HHHHHHhCCCCeEEEEEeecCCh--HHHHHHhCCe---eEeecCCCCChhHeeeeecCchH
Confidence 999976 56655544 45566677899999999999987 4445555433 33334445556666667776778
Q ss_pred HHHHHHHHHHhc--------CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEec
Q 014134 245 AYADLCSVLKAN--------GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (430)
Q Consensus 245 ~~~~l~~~l~~~--------~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (430)
|++.+..+.+.. -.+++|||++|++.|+.++..|...|+++..+|++++..+|..+...|.++++.++|+|.
T Consensus 419 K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTA 498 (830)
T COG1202 419 KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTA 498 (830)
T ss_pred HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehh
Confidence 888888877642 256899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCceEEEEec----CC-CCHHHHHHHhccCCCCCC--CceEEEeeCc
Q 014134 317 AFGMGIDRKDVRLVCHFN----IP-KSMEAFYQESGRAGRDQL--PSKSLLYYGM 364 (430)
Q Consensus 317 ~~~~Gidi~~~~~vi~~~----~p-~s~~~~~q~~GR~~R~g~--~g~~i~~~~~ 364 (430)
+++.|+|+| ++.||+-+ .. .|+.+|.||.||+||.+. .|.+++++.+
T Consensus 499 AL~AGVDFP-ASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 499 ALAAGVDFP-ASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred hhhcCCCCc-hHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 999999999 45555322 22 389999999999999875 5777777644
No 56
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=6e-39 Score=317.07 Aligned_cols=311 Identities=15% Similarity=0.129 Sum_probs=204.3
Q ss_pred HHHHHHHHhcCCccchHHHHHHHHHHHcCC-CEEEEcCCCChHHHHhHHhhh---c--CCC-eEEEEcchHHHHHHHHHH
Q 014134 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPAL---A--KPG-IVLVVSPLIALMENQVIG 97 (430)
Q Consensus 25 ~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~-~~lv~a~tGsGKT~~~~~~~l---~--~~~-~~lil~Pt~~L~~q~~~~ 97 (430)
+....+.+..||+ |+|||.++++.++.|+ ++++++|||||||.++.++.+ . ..+ +.++++|||+|+.|+++.
T Consensus 3 ~f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~ 81 (844)
T TIGR02621 3 KFDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEE 81 (844)
T ss_pred hHHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHH
Confidence 3455667767998 9999999999999998 688889999999986543333 1 123 455577999999999999
Q ss_pred HHHcCcce---------------------------eEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHH-
Q 014134 98 LKEKGIAG---------------------------EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK- 149 (430)
Q Consensus 98 ~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~- 149 (430)
+.+++... ....++.... ..........+| +|+|++.+..
T Consensus 82 ~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~------~q~~~l~~~p~I------IVgT~D~i~sr 149 (844)
T TIGR02621 82 AEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADN------DEWMLDPHRPAV------IVGTVDMIGSR 149 (844)
T ss_pred HHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChH------HHHHhcCCCCcE------EEECHHHHcCC
Confidence 98865322 1112221111 111111122334 6677532211
Q ss_pred HH-------------HhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCC---CCcEEEEEcCCCchhHHHHHH
Q 014134 150 LK-------------KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVME 213 (430)
Q Consensus 150 ~~-------------~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~---~~~~i~~SAT~~~~~~~~~~~ 213 (430)
.+ ....++++.++|+|||| ++.+ |...+..+.......+ +.|+++||||++.........
T Consensus 150 ~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~g--F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~ 225 (844)
T TIGR02621 150 LLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPA--FQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTL 225 (844)
T ss_pred ccccccccccccccchhhhhccceEEEEehhh--hccc--cHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHH
Confidence 01 11125668899999999 4556 6655555544321122 268999999998866543222
Q ss_pred HhCCCCCeEEecc---CCCCceEEEEEecCcchhHHHH----HHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcce
Q 014134 214 SLCLQNPLVLKSS---FNRPNLFYEVRYKDLLDDAYAD----LCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA 286 (430)
Q Consensus 214 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~ 286 (430)
... ++..+... .....+...+ .. ....+... +..++. ..++++||||||++.|+.+++.|++.++ .
T Consensus 226 ~~~--~p~~i~V~~~~l~a~ki~q~v-~v-~~e~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~ 298 (844)
T TIGR02621 226 LSA--EDYKHPVLKKRLAAKKIVKLV-PP-SDEKFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKEKF--E 298 (844)
T ss_pred Hcc--CCceeecccccccccceEEEE-ec-ChHHHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhcCC--e
Confidence 221 22222211 1112222221 11 11223322 333333 3567899999999999999999998775 8
Q ss_pred eecCCCCHHHHH-----HHHHHhhc----CC-------ceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCC
Q 014134 287 AYHAGLNDKARS-----SVLDDWIS----SR-------KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG 350 (430)
Q Consensus 287 ~~hg~~~~~~r~-----~~~~~f~~----g~-------~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~ 350 (430)
.+||+|++.+|. .+++.|++ |. .+|||||+++++|+|++. ++||++..| .++|+||+||+|
T Consensus 299 lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtg 375 (844)
T TIGR02621 299 LLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVN 375 (844)
T ss_pred EeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccC
Confidence 999999999999 88999987 44 689999999999999996 888887777 799999999999
Q ss_pred CCCCCc-eEEEee
Q 014134 351 RDQLPS-KSLLYY 362 (430)
Q Consensus 351 R~g~~g-~~i~~~ 362 (430)
|.|..| ..++++
T Consensus 376 R~G~~~~~~i~vv 388 (844)
T TIGR02621 376 RFGELQACQIAVV 388 (844)
T ss_pred CCCCCCCceEEEE
Confidence 999854 335554
No 57
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=9e-39 Score=333.14 Aligned_cols=288 Identities=23% Similarity=0.282 Sum_probs=204.4
Q ss_pred EEcCCCChHHHHhHHhhhcC----------------CCeEEEEcchHHHHHHHHHHHHH----------------cCcce
Q 014134 58 CLMPTGGGKSMCYQIPALAK----------------PGIVLVVSPLIALMENQVIGLKE----------------KGIAG 105 (430)
Q Consensus 58 v~a~tGsGKT~~~~~~~l~~----------------~~~~lil~Pt~~L~~q~~~~~~~----------------~~~~~ 105 (430)
|+||||||||++|.+|++.+ +.++|||+|+++|++|+.+.++. .++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999987621 36899999999999999998763 23444
Q ss_pred eEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh---hhcCCccEEEEecCccccc--cCCCcHHH
Q 014134 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI---HSRGLLNLVAIDEAHCISS--WGHDFRPS 180 (430)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~---~~~~~~~~lViDE~h~~~~--~~~~~~~~ 180 (430)
...+++......... .....++ +|+||+.+..++.. ..++++++||+||+|.+.+ +|..+...
T Consensus 81 ~vrtGDt~~~eR~rl----l~~ppdI--------LVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~ 148 (1490)
T PRK09751 81 GIRTGDTPAQERSKL----TRNPPDI--------LITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALS 148 (1490)
T ss_pred EEEECCCCHHHHHHH----hcCCCCE--------EEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHH
Confidence 455555544433222 1112223 99999998887542 3467799999999999975 46666666
Q ss_pred HHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCC--ceEEEEEecCc-----------------
Q 014134 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP--NLFYEVRYKDL----------------- 241 (430)
Q Consensus 181 ~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----------------- 241 (430)
+..+..+.. .+.|+|++|||+++. ..+..++....+..+....... .+...+...+.
T Consensus 149 LeRL~~l~~--~~~QrIgLSATI~n~--eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~ 224 (1490)
T PRK09751 149 LERLDALLH--TSAQRIGLSATVRSA--SDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAG 224 (1490)
T ss_pred HHHHHHhCC--CCCeEEEEEeeCCCH--HHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchh
Confidence 666655432 368999999999984 4567777655444332222211 22211111110
Q ss_pred -chh----HHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCC---------------------------------C
Q 014134 242 -LDD----AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG---------------------------------I 283 (430)
Q Consensus 242 -~~~----~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~---------------------------------~ 283 (430)
... ....+...+. .+.++||||||++.|+.++..|++.. .
T Consensus 225 r~~~i~~~v~~~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1490)
T PRK09751 225 REGSIWPYIETGILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVF 302 (1490)
T ss_pred hhhhhhHHHHHHHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccce
Confidence 000 0112222222 35689999999999999999887631 1
Q ss_pred cceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCC-CCCceEEEee
Q 014134 284 SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD-QLPSKSLLYY 362 (430)
Q Consensus 284 ~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~-g~~g~~i~~~ 362 (430)
.+..|||++++++|..+++.|++|++++||||+++++|||++++++||+++.|.++.+|+||+||+||. |..+.++++.
T Consensus 303 ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p 382 (1490)
T PRK09751 303 IARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFP 382 (1490)
T ss_pred eeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEe
Confidence 156899999999999999999999999999999999999999999999999999999999999999996 3345555443
Q ss_pred C
Q 014134 363 G 363 (430)
Q Consensus 363 ~ 363 (430)
.
T Consensus 383 ~ 383 (1490)
T PRK09751 383 R 383 (1490)
T ss_pred C
Confidence 3
No 58
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.2e-38 Score=317.36 Aligned_cols=323 Identities=20% Similarity=0.245 Sum_probs=233.9
Q ss_pred CChHHHHHHHHHHhcCCccchHHHHHHHHHHHc-CCCEEEEcCCCChHHHHhHHhhhcC----CCeEEEEcchHHHHHHH
Q 014134 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVSPLIALMENQ 94 (430)
Q Consensus 20 ~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~-~~~~lv~a~tGsGKT~~~~~~~l~~----~~~~lil~Pt~~L~~q~ 94 (430)
..+.+.+...++. .|+.++.+.|+.++....- ++|+++++|||+|||+.+++++++. +.+++|+||+++||+|.
T Consensus 14 ~~~~~~v~~i~~~-~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek 92 (766)
T COG1204 14 VKLDDRVLEILKG-DGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEK 92 (766)
T ss_pred ccccHHHHHHhcc-CChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHH
Confidence 4466777777776 6888888888888877654 5999999999999999999988743 57999999999999999
Q ss_pred HHHHH---HcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhh--cCCccEEEEecCcc
Q 014134 95 VIGLK---EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS--RGLLNLVAIDEAHC 169 (430)
Q Consensus 95 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~--~~~~~~lViDE~h~ 169 (430)
+++|+ .+|+.+...+++....... +..+.++|+||+++..+.+... ...+++||+||+|.
T Consensus 93 ~~~~~~~~~~GirV~~~TgD~~~~~~~---------------l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~ 157 (766)
T COG1204 93 YEEFSRLEELGIRVGISTGDYDLDDER---------------LARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHL 157 (766)
T ss_pred HHHhhhHHhcCCEEEEecCCcccchhh---------------hccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeee
Confidence 99998 6898888887766433211 1122339999999887755433 45699999999999
Q ss_pred cccc--CCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCe-EEeccCCCCce--EEEEEecC----
Q 014134 170 ISSW--GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNL--FYEVRYKD---- 240 (430)
Q Consensus 170 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~---- 240 (430)
+.+. |+...... .+.....+..|++++|||+++. .++..|+...... ..........+ ...+....
T Consensus 158 l~d~~RG~~lE~iv---~r~~~~~~~~rivgLSATlpN~--~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k 232 (766)
T COG1204 158 LGDRTRGPVLESIV---ARMRRLNELIRIVGLSATLPNA--EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK 232 (766)
T ss_pred cCCcccCceehhHH---HHHHhhCcceEEEEEeeecCCH--HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccc
Confidence 9774 55444333 3344444568999999999997 4557777655331 11111111111 11111111
Q ss_pred -----cchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcC----------------------------------
Q 014134 241 -----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------------------------------- 281 (430)
Q Consensus 241 -----~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~---------------------------------- 281 (430)
..+..+..+.+.++ .+++++|||+|++.+...+..+...
T Consensus 233 ~~~~~~~~~~~~~v~~~~~--~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~ 310 (766)
T COG1204 233 TWPLLIDNLALELVLESLA--EGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELA 310 (766)
T ss_pred cccccchHHHHHHHHHHHh--cCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHH
Confidence 11222233333333 5779999999999999999888720
Q ss_pred ---CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEE----Eec-----CCCCHHHHHHHhccC
Q 014134 282 ---GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----HFN-----IPKSMEAFYQESGRA 349 (430)
Q Consensus 282 ---~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi----~~~-----~p~s~~~~~q~~GR~ 349 (430)
..++++||.+++.++|..+.+.|++|.++||+||+++++|+|+|.-.+|| .|+ .+.++-++.||.||+
T Consensus 311 e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRA 390 (766)
T COG1204 311 ELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRA 390 (766)
T ss_pred HHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcC
Confidence 01568999999999999999999999999999999999999999766666 355 455789999999999
Q ss_pred CCCCC--CceEEEeeCcc
Q 014134 350 GRDQL--PSKSLLYYGMD 365 (430)
Q Consensus 350 ~R~g~--~g~~i~~~~~~ 365 (430)
||.|- .|.++++....
T Consensus 391 GRPg~d~~G~~~i~~~~~ 408 (766)
T COG1204 391 GRPGYDDYGEAIILATSH 408 (766)
T ss_pred CCCCcCCCCcEEEEecCc
Confidence 99985 56777776443
No 59
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1e-37 Score=283.35 Aligned_cols=313 Identities=23% Similarity=0.286 Sum_probs=222.6
Q ss_pred CCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc----CCCeEEEEcchHHHHHHHHHHHHH-cCcc---ee
Q 014134 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKE-KGIA---GE 106 (430)
Q Consensus 35 g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~----~~~~~lil~Pt~~L~~q~~~~~~~-~~~~---~~ 106 (430)
+.-+++.||.......+.+ |.+++.|||-|||+++++-+.. .+.++|+++||+-|+.|.++.|.+ +|+. ..
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~ 90 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIA 90 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhhee
Confidence 3447899999988777666 9999999999999988776653 244899999999999999999988 3442 22
Q ss_pred EeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHH-HH-HhhhcCCccEEEEecCccccccCCCcHHHHHHH
Q 014134 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK-LK-KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL 184 (430)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~-~~-~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l 184 (430)
.+++......+...|... ++ +|+||..+.+ +. ...+...+.++||||||+... ++++- ...
T Consensus 91 ~ltGev~p~~R~~~w~~~-------kV------fvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvG-nyAYv---~Va 153 (542)
T COG1111 91 ALTGEVRPEEREELWAKK-------KV------FVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVG-NYAYV---FVA 153 (542)
T ss_pred eecCCCChHHHHHHHhhC-------CE------EEeccHHHHhHHhcCccChHHceEEEechhhhccC-cchHH---HHH
Confidence 444444444444444321 22 8889986544 32 355667789999999999753 11121 223
Q ss_pred HHHHhhCCCCcEEEEEcCCCchhH--HHHHHHhCCCCCeEEeccCCC------CceEEEEEecCc---------------
Q 014134 185 SSLRNYLPDVPILALTATAAPKVQ--KDVMESLCLQNPLVLKSSFNR------PNLFYEVRYKDL--------------- 241 (430)
Q Consensus 185 ~~~~~~~~~~~~i~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~--------------- 241 (430)
..+.....+..++++||||..... ..+...++..... ++++.+. ..+.......+.
T Consensus 154 ~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~ve-vrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l 232 (542)
T COG1111 154 KEYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVE-VRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDAL 232 (542)
T ss_pred HHHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEE-EecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHH
Confidence 334555557789999999987543 3334444333211 1111110 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 014134 242 -------------------------------------------------------------------------------- 241 (430)
Q Consensus 242 -------------------------------------------------------------------------------- 241 (430)
T Consensus 233 ~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~ 312 (542)
T COG1111 233 KPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEE 312 (542)
T ss_pred HHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence
Q ss_pred ---------------------------------chhHHHHHHHHHHh----cCCceEEEEeCccccHHHHHHHHHcCCCc
Q 014134 242 ---------------------------------LDDAYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (430)
Q Consensus 242 ---------------------------------~~~~~~~l~~~l~~----~~~~~~iVf~~s~~~~~~l~~~l~~~~~~ 284 (430)
..+|++.+.+++++ .++.++|||++.+.+++.+.+.|.+.+..
T Consensus 313 ~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~ 392 (542)
T COG1111 313 ATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIK 392 (542)
T ss_pred hcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCc
Confidence 00344555555543 46789999999999999999999998777
Q ss_pred ce--e-------ecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCC
Q 014134 285 CA--A-------YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 355 (430)
Q Consensus 285 ~~--~-------~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~ 355 (430)
+. + ...||++.++.++++.|++|+++|||||++.++|+|+|.+|+||.|++..|+..++||.||+||. +.
T Consensus 393 ~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~ 471 (542)
T COG1111 393 ARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RK 471 (542)
T ss_pred ceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CC
Confidence 63 2 23579999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred ceEEEeeCccch
Q 014134 356 SKSLLYYGMDDR 367 (430)
Q Consensus 356 g~~i~~~~~~~~ 367 (430)
|.++++++.+..
T Consensus 472 Grv~vLvt~gtr 483 (542)
T COG1111 472 GRVVVLVTEGTR 483 (542)
T ss_pred CeEEEEEecCch
Confidence 999999988743
No 60
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.5e-37 Score=329.59 Aligned_cols=334 Identities=16% Similarity=0.199 Sum_probs=238.2
Q ss_pred hHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh---cCCCeEEEEcchHHHHHHHHHHH
Q 014134 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGL 98 (430)
Q Consensus 22 ~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt~~L~~q~~~~~ 98 (430)
.-.++.+.+++.+|| +|+++|.++++.+++|+|++++||||+|||++++++++ .++.+++||+||++|+.|+++.+
T Consensus 64 ~~~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 64 EVEEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred HHHHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHH
Confidence 345566667777899 69999999999999999999999999999996654443 24678999999999999999999
Q ss_pred HHcC------cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccc
Q 014134 99 KEKG------IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (430)
Q Consensus 99 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~ 172 (430)
+.++ .......++............+.....++ +|+||+++...........++++|+||||++++
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dI--------LV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDI--------LVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLK 214 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCE--------EEECCchhHHhHHHHhhCCCCEEEEECceeccc
Confidence 8853 22333444444444444444444333333 889999877654433336699999999999987
Q ss_pred cCC---------CcHHHHHH-----------------------HHHHHhhCC-CCc-EEEEEcCCCchhHHHHHHHhCCC
Q 014134 173 WGH---------DFRPSYRK-----------------------LSSLRNYLP-DVP-ILALTATAAPKVQKDVMESLCLQ 218 (430)
Q Consensus 173 ~~~---------~~~~~~~~-----------------------l~~~~~~~~-~~~-~i~~SAT~~~~~~~~~~~~~~~~ 218 (430)
+|. .|.+.+.. +......+| ..+ .+++|||.++... ....+ .
T Consensus 215 ~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~--~ 290 (1638)
T PRK14701 215 ASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLY--R 290 (1638)
T ss_pred cccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHh--h
Confidence 654 36555432 111112233 334 6779999987411 12222 2
Q ss_pred CCeEEeccCCC---CceEEEEEecCcchhHHHHHHHHHHhcCCceEEEEeCcccc---HHHHHHHHHcCCCcceeecCCC
Q 014134 219 NPLVLKSSFNR---PNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTT---CDELSAYLSAGGISCAAYHAGL 292 (430)
Q Consensus 219 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~---~~~l~~~l~~~~~~~~~~hg~~ 292 (430)
++..+..+... .++...+.... ...+ ..+.++++.. +..+||||++++. |+.+++.|.+.|+++..+||+
T Consensus 291 ~~l~f~v~~~~~~lr~i~~~yi~~~-~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~- 366 (1638)
T PRK14701 291 ELLGFEVGSGRSALRNIVDVYLNPE-KIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK- 366 (1638)
T ss_pred cCeEEEecCCCCCCCCcEEEEEECC-HHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-
Confidence 33334333333 33433333222 1222 4677777765 4679999999886 489999999999999999995
Q ss_pred CHHHHHHHHHHhhcCCceEEEEe----ccccccccccC-ceEEEEecCCC---CHHHHHHHh-------------ccCCC
Q 014134 293 NDKARSSVLDDWISSRKQVVVAT----VAFGMGIDRKD-VRLVCHFNIPK---SMEAFYQES-------------GRAGR 351 (430)
Q Consensus 293 ~~~~r~~~~~~f~~g~~~vLv~T----~~~~~Gidi~~-~~~vi~~~~p~---s~~~~~q~~-------------GR~~R 351 (430)
|...+++|++|+++||||| ++++||||+|+ +++|||+++|. +.+.|.|-. ||++|
T Consensus 367 ----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~ 442 (1638)
T PRK14701 367 ----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELK 442 (1638)
T ss_pred ----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcc
Confidence 8899999999999999999 58999999998 99999999999 888666655 99999
Q ss_pred CCCCceEEEeeCccchHHHHHHHHh
Q 014134 352 DQLPSKSLLYYGMDDRRRMEFILSK 376 (430)
Q Consensus 352 ~g~~g~~i~~~~~~~~~~~~~~~~~ 376 (430)
.|..+.++..+...+...++.+++.
T Consensus 443 ~g~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 443 EGIPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred cCCcchhHHHhHHHHHHHHHHHhcc
Confidence 9988888766666666666665544
No 61
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4.2e-38 Score=306.59 Aligned_cols=297 Identities=16% Similarity=0.110 Sum_probs=203.8
Q ss_pred ccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhh---hcC-CCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCc
Q 014134 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQ 112 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~---l~~-~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 112 (430)
..|+++|.++++.++.+++.++++|||+|||+++...+ +++ ..++||++||++|+.||.+.+.+++..........
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i 192 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKI 192 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEE
Confidence 47999999999999999999999999999998765332 233 34899999999999999999998653211000000
Q ss_pred hHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCC
Q 014134 113 TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP 192 (430)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~ 192 (430)
..+... ... .+++|+|++.+.+.... .+..+++||+||||++.+. .+..+...++
T Consensus 193 --------~~g~~~-~~~------~~I~VaT~qsl~~~~~~-~~~~~~~iIvDEaH~~~~~---------~~~~il~~~~ 247 (501)
T PHA02558 193 --------YSGTAK-DTD------APIVVSTWQSAVKQPKE-WFDQFGMVIVDECHLFTGK---------SLTSIITKLD 247 (501)
T ss_pred --------ecCccc-CCC------CCEEEeeHHHHhhchhh-hccccCEEEEEchhcccch---------hHHHHHHhhh
Confidence 000000 011 22389999877654322 3467899999999998652 2334444454
Q ss_pred -CCcEEEEEcCCCchhHHHH--HHHhCCCCCeEEecc--------C-CCCceEE-EEE-------------e------cC
Q 014134 193 -DVPILALTATAAPKVQKDV--MESLCLQNPLVLKSS--------F-NRPNLFY-EVR-------------Y------KD 240 (430)
Q Consensus 193 -~~~~i~~SAT~~~~~~~~~--~~~~~~~~~~~~~~~--------~-~~~~~~~-~~~-------------~------~~ 240 (430)
..++++||||+........ ...++ +...... . ....+.. ... . ..
T Consensus 248 ~~~~~lGLTATp~~~~~~~~~~~~~fG---~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~ 324 (501)
T PHA02558 248 NCKFKFGLTGSLRDGKANILQYVGLFG---DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYIT 324 (501)
T ss_pred ccceEEEEeccCCCccccHHHHHHhhC---CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHh
Confidence 4579999999976432211 11111 1111100 0 0000000 000 0 00
Q ss_pred cchhHHHHHHHHHHh--cCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEe-cc
Q 014134 241 LLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT-VA 317 (430)
Q Consensus 241 ~~~~~~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T-~~ 317 (430)
....+...+..++.. ..+.+++|||++.++++.+++.|++.+.++..+||+++.++|..+++.|++|+..+|||| ++
T Consensus 325 ~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~ 404 (501)
T PHA02558 325 SHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGV 404 (501)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcce
Confidence 001122223333222 245678999999999999999999999999999999999999999999999999999998 89
Q ss_pred ccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCc-eEEEe
Q 014134 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS-KSLLY 361 (430)
Q Consensus 318 ~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g-~~i~~ 361 (430)
+++|+|+|++++||+++++.|...|+||+||++|.+..+ .+.++
T Consensus 405 l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 405 FSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred eccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 999999999999999999999999999999999987654 44444
No 62
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=5.3e-38 Score=308.69 Aligned_cols=386 Identities=20% Similarity=0.217 Sum_probs=290.1
Q ss_pred CChHHHHHHHHHHhcCCccchHHHHHHHHHHHcC-CCEEEEcCCCChHHHHhHHhhhcC--------------CCeEEEE
Q 014134 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK--------------PGIVLVV 84 (430)
Q Consensus 20 ~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~-~~~lv~a~tGsGKT~~~~~~~l~~--------------~~~~lil 84 (430)
..++..-..++ +|...++++|....+..+.+ .++++|||||+|||.++++.+++. ..+++|+
T Consensus 294 selP~Wnq~aF---~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYI 370 (1674)
T KOG0951|consen 294 SELPKWNQPAF---FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYI 370 (1674)
T ss_pred cCCcchhhhhc---ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEE
Confidence 34444444444 36778999999999999887 699999999999999999999853 4589999
Q ss_pred cchHHHHHHHHHHHHH----cCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh----hhc
Q 014134 85 SPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI----HSR 156 (430)
Q Consensus 85 ~Pt~~L~~q~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~----~~~ 156 (430)
+|+++|++.+...+.+ +|+.+...++....+....- ..++ +|+||+...-+-+. -..
T Consensus 371 APmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qie-------eTqV--------IV~TPEK~DiITRk~gdraY~ 435 (1674)
T KOG0951|consen 371 APMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQIE-------ETQV--------IVTTPEKWDIITRKSGDRAYE 435 (1674)
T ss_pred eeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhhh-------ccee--------EEeccchhhhhhcccCchhHH
Confidence 9999999999987665 67777777766544332211 1112 88999876544322 223
Q ss_pred CCccEEEEecCcccc-ccCCCcHHHHHHH-HHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCC--eEEeccCCCCce
Q 014134 157 GLLNLVAIDEAHCIS-SWGHDFRPSYRKL-SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNP--LVLKSSFNRPNL 232 (430)
Q Consensus 157 ~~~~~lViDE~h~~~-~~~~~~~~~~~~l-~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 232 (430)
..++++|+||.|.+- ++|+.......+. .+....-.+.+++++|||+|+-. ++..++....+ ..+..++.+..+
T Consensus 436 qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~--DV~~Fl~v~~~glf~fd~syRpvPL 513 (1674)
T KOG0951|consen 436 QLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYE--DVASFLRVDPEGLFYFDSSYRPVPL 513 (1674)
T ss_pred HHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchh--hhHHHhccCcccccccCcccCcCCc
Confidence 347899999999994 4676554444332 22222233788999999999863 33444443332 233445555555
Q ss_pred EEEEEecCc--chhHHHHHHH-----HHHhcCCceEEEEeCccccHHHHHHHHHcC------------------------
Q 014134 233 FYEVRYKDL--LDDAYADLCS-----VLKANGDTCAIVYCLERTTCDELSAYLSAG------------------------ 281 (430)
Q Consensus 233 ~~~~~~~~~--~~~~~~~l~~-----~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~------------------------ 281 (430)
.+.+..... ...+...+.+ .++..+.+++|||+.+++++.+.|+.++..
T Consensus 514 ~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrte 593 (1674)
T KOG0951|consen 514 KQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTE 593 (1674)
T ss_pred cceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhh
Confidence 555443222 2223333332 344456789999999999998888887621
Q ss_pred -------------CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEE----EecC------CCC
Q 014134 282 -------------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----HFNI------PKS 338 (430)
Q Consensus 282 -------------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi----~~~~------p~s 338 (430)
..+.++||.||+..+|..+++.|++|.++|||+|.++++|+|+|.-+++| .|++ +.+
T Consensus 594 a~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~els 673 (1674)
T KOG0951|consen 594 AGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELS 673 (1674)
T ss_pred hhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCC
Confidence 13678999999999999999999999999999999999999999777777 3444 348
Q ss_pred HHHHHHHhccCCCCC--CCceEEEeeCccchHHHHHHHHhccCCCCCchhhhHHHHHHhhhhccccccceeecCcceeee
Q 014134 339 MEAFYQESGRAGRDQ--LPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERWLITVKVLDVAGKRFSRVLGNRYLYH 416 (430)
Q Consensus 339 ~~~~~q~~GR~~R~g--~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (430)
+.+..||.||+||.+ +.|.++++.+.++.+++..+++..-+.+++..+.+.+-++.+.+.+ +++..++..|..|+|.
T Consensus 674 p~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~G-v~~~~d~~~wl~yTyl 752 (1674)
T KOG0951|consen 674 PLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLG-VRSARDAVDWLGYTYL 752 (1674)
T ss_pred HHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcc-hhhHHHHHhhhcceee
Confidence 999999999999976 4688999999999999999999999999999999999999999999 7999999999999999
Q ss_pred eccccccCCC
Q 014134 417 YVKTHAMPAN 426 (430)
Q Consensus 417 ~~~~~~~~s~ 426 (430)
|.|+-..|..
T Consensus 753 yvRm~~~p~l 762 (1674)
T KOG0951|consen 753 YVRMVRNPTL 762 (1674)
T ss_pred EEeeccCchh
Confidence 9999888753
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.6e-37 Score=291.57 Aligned_cols=304 Identities=18% Similarity=0.119 Sum_probs=194.1
Q ss_pred CEEEEcCCCChHHHHhHHhhh-----cCCCeEEEEcchHHHHHHHHHHHHHc-CcceeEeCCCchHHHHHH------HHh
Q 014134 55 DCFCLMPTGGGKSMCYQIPAL-----AKPGIVLVVSPLIALMENQVIGLKEK-GIAGEFLSSTQTMQVKTK------IYE 122 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~~~l-----~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~ 122 (430)
++++.||||||||.+++++++ ....+++|++|+++|+.|+++.+..+ +.......+......... ...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 579999999999999999887 34579999999999999999999885 543332222211100000 000
Q ss_pred hhhcCCCceeEEEECCccccChhHHHHHHHh------hh--cCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCC
Q 014134 123 DLDSGKPSLRLLYVTPELTATPGFMSKLKKI------HS--RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 194 (430)
Q Consensus 123 ~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~------~~--~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (430)
.........+.+...+++++||+.+...... .. .-..+++|+||+|.+.+.+ .......+..+. ..+.
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~--~~~l~~~l~~l~--~~~~ 156 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYT--LALILAVLEVLK--DNDV 156 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHH--HHHHHHHHHHHH--HcCC
Confidence 0000001112233455689999976554322 11 1123789999999998754 222222222222 2478
Q ss_pred cEEEEEcCCCchhHHHHHHHhCCC-CCeEEeccCCCCceEEEEE-ecCcchhHHHHHHHHHHh-cCCceEEEEeCccccH
Q 014134 195 PILALTATAAPKVQKDVMESLCLQ-NPLVLKSSFNRPNLFYEVR-YKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTC 271 (430)
Q Consensus 195 ~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~-~~~~~~iVf~~s~~~~ 271 (430)
|+++||||+++..... ....... ...............+.+. .......+...+..+++. ..++++||||++++.+
T Consensus 157 ~~i~~SATlp~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~ 235 (358)
T TIGR01587 157 PILLMSATLPKFLKEY-AEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRA 235 (358)
T ss_pred CEEEEecCchHHHHHH-HhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHH
Confidence 9999999998654332 2222111 1111111100000011111 111112233344444443 2467999999999999
Q ss_pred HHHHHHHHcCCC--cceeecCCCCHHHHHH----HHHHhhcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHH
Q 014134 272 DELSAYLSAGGI--SCAAYHAGLNDKARSS----VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQE 345 (430)
Q Consensus 272 ~~l~~~l~~~~~--~~~~~hg~~~~~~r~~----~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~ 345 (430)
+.+++.|++.+. .+..+||++++.+|.. +++.|++|+.++||||+++++|+|++ ++++|++..| .++|+||
T Consensus 236 ~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr 312 (358)
T TIGR01587 236 QEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQR 312 (358)
T ss_pred HHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHH
Confidence 999999988765 4899999999999976 48899999999999999999999997 8888888776 8899999
Q ss_pred hccCCCCCCC----ceEEEeeCccc
Q 014134 346 SGRAGRDQLP----SKSLLYYGMDD 366 (430)
Q Consensus 346 ~GR~~R~g~~----g~~i~~~~~~~ 366 (430)
+||+||.|+. |.++++....+
T Consensus 313 ~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 313 LGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred hccccCCCCCCCCCCeEEEEeecCC
Confidence 9999998753 36666655443
No 64
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=3e-37 Score=320.85 Aligned_cols=306 Identities=20% Similarity=0.254 Sum_probs=215.0
Q ss_pred HHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh---cCCCeEEEEcchHHHHHHHHHHHHHc
Q 014134 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKEK 101 (430)
Q Consensus 25 ~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt~~L~~q~~~~~~~~ 101 (430)
+..+.+++.+|+ +|+++|..++|.++.|+|++++||||+|||..++..++ .++.+++|++||++|+.|+++.++.+
T Consensus 68 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l 146 (1176)
T PRK09401 68 EFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKF 146 (1176)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHH
Confidence 444456666688 79999999999999999999999999999965443222 34789999999999999999999987
Q ss_pred Ccce----eEeCCCch--HHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCC
Q 014134 102 GIAG----EFLSSTQT--MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (430)
Q Consensus 102 ~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~ 175 (430)
+... ....+... ..........+.....++ +|+||+++.+.........++++|+||||++++++.
T Consensus 147 ~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~I--------lV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k 218 (1176)
T PRK09401 147 GEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDI--------LVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSK 218 (1176)
T ss_pred hhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCE--------EEECHHHHHHHHHhccccccCEEEEEChHHhhhccc
Confidence 5432 22222221 112222333333333333 999999988876655566699999999999987432
Q ss_pred C---------cH-HHHHH-----------------HHHHHhhC-----CCCcEEEEEcCCCchhHH-HHHHHhCCCCCeE
Q 014134 176 D---------FR-PSYRK-----------------LSSLRNYL-----PDVPILALTATAAPKVQK-DVMESLCLQNPLV 222 (430)
Q Consensus 176 ~---------~~-~~~~~-----------------l~~~~~~~-----~~~~~i~~SAT~~~~~~~-~~~~~~~~~~~~~ 222 (430)
+ |. ..+.. +..+...+ ...|++++|||.++.... .+...+. ...
T Consensus 219 ~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll---~~~ 295 (1176)
T PRK09401 219 NIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELL---GFE 295 (1176)
T ss_pred chhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccc---eEE
Confidence 2 32 11211 11122111 157899999999875332 1111110 011
Q ss_pred Ee-ccCCCCceEEEEEecCcchhHHHHHHHHHHhcCCceEEEEeCcccc---HHHHHHHHHcCCCcceeecCCCCHHHHH
Q 014134 223 LK-SSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTT---CDELSAYLSAGGISCAAYHAGLNDKARS 298 (430)
Q Consensus 223 ~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~---~~~l~~~l~~~~~~~~~~hg~~~~~~r~ 298 (430)
+. ......++...+.... .+...+.++++..+ .++||||++++. ++.+++.|+..|+++..+||++ .
T Consensus 296 v~~~~~~~rnI~~~yi~~~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~ 366 (1176)
T PRK09401 296 VGSPVFYLRNIVDSYIVDE---DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----E 366 (1176)
T ss_pred ecCcccccCCceEEEEEcc---cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----H
Confidence 11 1122234444333332 45666777776654 579999999888 9999999999999999999999 2
Q ss_pred HHHHHhhcCCceEEEE----eccccccccccC-ceEEEEecCCC------CHHHHHHHhccCCC
Q 014134 299 SVLDDWISSRKQVVVA----TVAFGMGIDRKD-VRLVCHFNIPK------SMEAFYQESGRAGR 351 (430)
Q Consensus 299 ~~~~~f~~g~~~vLv~----T~~~~~Gidi~~-~~~vi~~~~p~------s~~~~~q~~GR~~R 351 (430)
..+++|++|+++|||| |++++||+|+|+ +++||||+.|. ..+.+.||+||+..
T Consensus 367 ~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 367 RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 2359999999999999 689999999999 89999999998 67889999999964
No 65
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.1e-36 Score=299.61 Aligned_cols=299 Identities=18% Similarity=0.236 Sum_probs=202.0
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCChHHHH---------hHHhh---hc------CCCeEEEEcchHHHHHHHHHHHHHc-
Q 014134 41 DKQLDAIQAVLSGRDCFCLMPTGGGKSMC---------YQIPA---LA------KPGIVLVVSPLIALMENQVIGLKEK- 101 (430)
Q Consensus 41 ~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~---------~~~~~---l~------~~~~~lil~Pt~~L~~q~~~~~~~~- 101 (430)
.+|.++++.++++++++++|+||||||.+ |+++. ++ ...++++++||++||.|+..++.+.
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999987 33222 22 2458999999999999999888652
Q ss_pred Cc------ceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCC
Q 014134 102 GI------AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (430)
Q Consensus 102 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~ 175 (430)
|. ......++... ... ...... .++ +++|++. ....+..+++||+||||.....+.
T Consensus 247 g~~~~~g~~v~v~~Gg~~~----~~~-~t~~k~--~~I------lv~T~~L-----~l~~L~~v~~VVIDEaHEr~~~~D 308 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPD----ELI-NTNPKP--YGL------VFSTHKL-----TLNKLFDYGTVIIDEVHEHDQIGD 308 (675)
T ss_pred CccccCCceEEEEECCcch----HHh-hcccCC--CCE------EEEeCcc-----cccccccCCEEEccccccCccchh
Confidence 22 12222222221 000 001011 123 6777652 112356688999999999876552
Q ss_pred CcHHHHHHHHHHHhh-CC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCC-CCceEEEEEecCc--------chh
Q 014134 176 DFRPSYRKLSSLRNY-LP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVRYKDL--------LDD 244 (430)
Q Consensus 176 ~~~~~~~~l~~~~~~-~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--------~~~ 244 (430)
.+..+... .+ ..|+++||||++.+... +..++. ++..+..... ...+......... ...
T Consensus 309 -------llL~llk~~~~~~rq~ILmSATl~~dv~~-l~~~~~--~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~ 378 (675)
T PHA02653 309 -------IIIAVARKHIDKIRSLFLMTATLEDDRDR-IKEFFP--NPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEE 378 (675)
T ss_pred -------HHHHHHHHhhhhcCEEEEEccCCcHhHHH-HHHHhc--CCcEEEeCCCcCCCeEEEEeecCcccccchhhhHH
Confidence 12222221 12 24899999999877544 444443 3433333211 1222222211110 011
Q ss_pred HHHHHHHHHHh---cCCceEEEEeCccccHHHHHHHHHcC--CCcceeecCCCCHHHHHHHHHHh-hcCCceEEEEeccc
Q 014134 245 AYADLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDW-ISSRKQVVVATVAF 318 (430)
Q Consensus 245 ~~~~l~~~l~~---~~~~~~iVf~~s~~~~~~l~~~l~~~--~~~~~~~hg~~~~~~r~~~~~~f-~~g~~~vLv~T~~~ 318 (430)
....+...+.. ..++++|||++++.+++.+++.|++. +..+..+||++++. ++.+++| ++|+.+|||||+++
T Consensus 379 ~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIA 456 (675)
T PHA02653 379 EKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYL 456 (675)
T ss_pred HHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChh
Confidence 11222333322 23568999999999999999999887 68899999999975 5667777 68999999999999
Q ss_pred cccccccCceEEEEec---CCC---------CHHHHHHHhccCCCCCCCceEEEeeCccchHHH
Q 014134 319 GMGIDRKDVRLVCHFN---IPK---------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (430)
Q Consensus 319 ~~Gidi~~~~~vi~~~---~p~---------s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~ 370 (430)
++|+|+|++++||+++ .|. |.++|.||+||+||. +.|.|+.++++++...+
T Consensus 457 ERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI 519 (675)
T PHA02653 457 ESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPI 519 (675)
T ss_pred hccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHH
Confidence 9999999999999998 555 889999999999999 79999999998765433
No 66
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.8e-35 Score=275.87 Aligned_cols=300 Identities=18% Similarity=0.190 Sum_probs=191.2
Q ss_pred HHHHHHHHHHcCCC--EEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcC--------cceeEeCCC
Q 014134 42 KQLDAIQAVLSGRD--CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG--------IAGEFLSST 111 (430)
Q Consensus 42 ~Q~~~~~~l~~~~~--~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~--------~~~~~~~~~ 111 (430)
+|.++++.+.++++ ++++||||+|||.+++++++....++++++|+++|++|+++.+..+. .......+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ 80 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKA 80 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCC
Confidence 59999999998874 78899999999999999999888889999999999999999887752 111222222
Q ss_pred chHHHHHHH--HhhhhcCCCce-----eEEEECCc-cccChhHHHHHHHhh----------hcCCccEEEEecCcccccc
Q 014134 112 QTMQVKTKI--YEDLDSGKPSL-----RLLYVTPE-LTATPGFMSKLKKIH----------SRGLLNLVAIDEAHCISSW 173 (430)
Q Consensus 112 ~~~~~~~~~--~~~~~~~~~~~-----~i~~~~~~-~v~T~~~~~~~~~~~----------~~~~~~~lViDE~h~~~~~ 173 (430)
......... ..+........ .+....++ +++||+.+..+.... ....++++|+||+|.+..+
T Consensus 81 ~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~ 160 (357)
T TIGR03158 81 TLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAK 160 (357)
T ss_pred chHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcc
Confidence 111100000 00000000000 00011222 677788777654321 1356899999999998754
Q ss_pred CCCcHHHHHHHHHHHhh-CCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccC------------CC---------Cc
Q 014134 174 GHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF------------NR---------PN 231 (430)
Q Consensus 174 ~~~~~~~~~~l~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~------------~~---------~~ 231 (430)
+......+.....+... ....+++++|||+++.....+........+.....+. .. +.
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (357)
T TIGR03158 161 QLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPP 240 (357)
T ss_pred cchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccc
Confidence 43222211112222221 1256899999999988777665432222222221111 00 22
Q ss_pred eEEEEEecC-cchhHHHHHHHHH----HhcCCceEEEEeCccccHHHHHHHHHcCC--CcceeecCCCCHHHHHHHHHHh
Q 014134 232 LFYEVRYKD-LLDDAYADLCSVL----KANGDTCAIVYCLERTTCDELSAYLSAGG--ISCAAYHAGLNDKARSSVLDDW 304 (430)
Q Consensus 232 ~~~~~~~~~-~~~~~~~~l~~~l----~~~~~~~~iVf~~s~~~~~~l~~~l~~~~--~~~~~~hg~~~~~~r~~~~~~f 304 (430)
+...+.... .....+..+.+.+ +..+++++||||+|++.++.+++.|++.+ ..+..+||.+++.+|.+.
T Consensus 241 i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~---- 316 (357)
T TIGR03158 241 VELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA---- 316 (357)
T ss_pred eEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh----
Confidence 333332211 1112222223322 33456799999999999999999999864 467889999999998754
Q ss_pred hcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCC
Q 014134 305 ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG 350 (430)
Q Consensus 305 ~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~ 350 (430)
++.++||||+++++|+|+|.. +|| ++ |.+.++|+||+||+|
T Consensus 317 --~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 317 --MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred --ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 478899999999999999976 555 45 889999999999997
No 67
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=6.5e-36 Score=300.96 Aligned_cols=301 Identities=16% Similarity=0.132 Sum_probs=210.5
Q ss_pred HHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC---CCeEEEEcchHHHHHHHHHHHHH-cCcceeEeCCCchHHHHH
Q 014134 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKT 118 (430)
Q Consensus 43 Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~---~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~ 118 (430)
-.+.+..+.++++++++|+||||||.++.+++++. +.+++++.|+|++|.|+++.+.+ ++.......+.....
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~--- 83 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRG--- 83 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcc---
Confidence 34566677788999999999999999999998854 56899999999999999998854 433221111111000
Q ss_pred HHHhhhhcCCCceeEEEECCccccChhHHHHHHH-hhhcCCccEEEEecCcc-ccccCCCcHHHHHHHHHHHhh-CCCCc
Q 014134 119 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRNY-LPDVP 195 (430)
Q Consensus 119 ~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~-~~~~~~~~~lViDE~h~-~~~~~~~~~~~~~~l~~~~~~-~~~~~ 195 (430)
....... +.+.++|++.+.++.. ...+..+++|||||+|. .++.+ +. +..+..+... .++.|
T Consensus 84 ---~~~~s~~--------t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~D--l~--L~ll~~i~~~lr~dlq 148 (819)
T TIGR01970 84 ---ENKVSRR--------TRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDAD--LG--LALALDVQSSLREDLK 148 (819)
T ss_pred ---ccccCCC--------CcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccc--hH--HHHHHHHHHhcCCCce
Confidence 0000111 2238899998777654 34577799999999994 55432 21 1122233332 35789
Q ss_pred EEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCcchh----HHHHHHHHHHhcCCceEEEEeCccccH
Q 014134 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDD----AYADLCSVLKANGDTCAIVYCLERTTC 271 (430)
Q Consensus 196 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~~~~~~iVf~~s~~~~ 271 (430)
+++||||++.... ..++. ..+. +........+...+........ ....+..++.. ..+++|||+++..++
T Consensus 149 lIlmSATl~~~~l---~~~l~-~~~v-I~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI 222 (819)
T TIGR01970 149 ILAMSATLDGERL---SSLLP-DAPV-VESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEI 222 (819)
T ss_pred EEEEeCCCCHHHH---HHHcC-CCcE-EEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHH
Confidence 9999999997643 33332 2222 2221111112222211111111 12334444444 356899999999999
Q ss_pred HHHHHHHHc---CCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCCC-----------
Q 014134 272 DELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK----------- 337 (430)
Q Consensus 272 ~~l~~~l~~---~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~----------- 337 (430)
+.+++.|++ .++.+..+||+|++++|..+++.|++|+.+|||||+++++|||+|++++||+++.|.
T Consensus 223 ~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~ 302 (819)
T TIGR01970 223 RRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGIT 302 (819)
T ss_pred HHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCc
Confidence 999999987 367889999999999999999999999999999999999999999999999999874
Q ss_pred -------CHHHHHHHhccCCCCCCCceEEEeeCccchH
Q 014134 338 -------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (430)
Q Consensus 338 -------s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~ 368 (430)
|.+++.||.||+||. ..|.|+.++++.+..
T Consensus 303 ~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 303 RLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred eeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 456799999999999 899999999987654
No 68
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=1.6e-37 Score=275.31 Aligned_cols=293 Identities=15% Similarity=0.164 Sum_probs=202.8
Q ss_pred CCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh--h
Q 014134 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--S 155 (430)
Q Consensus 78 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~--~ 155 (430)
.+.++|+-|+++|++|++..++++...... ..-..--...+........+.-.+++++|+||+++..+.+.. .
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~n-----p~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~ 360 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSN-----PEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVT 360 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCC-----hhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhcccee
Confidence 457999999999999999988776432210 000000011111111111223334555999999998887653 3
Q ss_pred cCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCC-------CCcEEEEEcCCCchhHHHHH-HHhCCCCCeEEeccC
Q 014134 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-------DVPILALTATAAPKVQKDVM-ESLCLQNPLVLKSSF 227 (430)
Q Consensus 156 ~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~i~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~ 227 (430)
+...+++|+||++.++..|.+ ..+.++..+.| ..|.+++|||++.-....+. +.+..+..+-+....
T Consensus 361 lt~crFlvlDead~lL~qgy~-----d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD 435 (725)
T KOG0349|consen 361 LTHCRFLVLDEADLLLGQGYD-----DKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGED 435 (725)
T ss_pred eeeeEEEEecchhhhhhcccH-----HHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEeccccc
Confidence 444789999999999987754 44555555554 45799999998753222122 122222222111111
Q ss_pred CCCceEEE----------------------------------EEecCcchhHHH-----HHHHHHHhcCCceEEEEeCcc
Q 014134 228 NRPNLFYE----------------------------------VRYKDLLDDAYA-----DLCSVLKANGDTCAIVYCLER 268 (430)
Q Consensus 228 ~~~~~~~~----------------------------------~~~~~~~~~~~~-----~l~~~l~~~~~~~~iVf~~s~ 268 (430)
..+...+. -...+....... .-...++.+...++||||.|.
T Consensus 436 ~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk 515 (725)
T KOG0349|consen 436 LVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTK 515 (725)
T ss_pred ccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEecc
Confidence 11111100 001111111221 223445556777899999999
Q ss_pred ccHHHHHHHHHcCC---CcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHH
Q 014134 269 TTCDELSAYLSAGG---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQE 345 (430)
Q Consensus 269 ~~~~~l~~~l~~~~---~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~ 345 (430)
..|+.+..++.+.| ++|.++||+..+.+|.+.++.|++++++.||||++++||+|+.++.++|+..+|.+..+|+||
T Consensus 516 ~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhr 595 (725)
T KOG0349|consen 516 QDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHR 595 (725)
T ss_pred ccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhh
Confidence 99999999999874 579999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCceEEEeeCccchHHHHHHHHhccCC
Q 014134 346 SGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (430)
Q Consensus 346 ~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~ 380 (430)
+||+||+.+.|.++.++.....+.|+..++.....
T Consensus 596 igrvgraermglaislvat~~ekvwyh~c~srgr~ 630 (725)
T KOG0349|consen 596 IGRVGRAERMGLAISLVATVPEKVWYHWCKSRGRS 630 (725)
T ss_pred hhccchhhhcceeEEEeeccchheeehhhhccCCc
Confidence 99999999999999999998888888888776543
No 69
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7.6e-36 Score=292.27 Aligned_cols=297 Identities=16% Similarity=0.150 Sum_probs=204.6
Q ss_pred cchHHHHHHHHHHHc-C--CCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcC-cc---eeEeCC
Q 014134 38 QFRDKQLDAIQAVLS-G--RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG-IA---GEFLSS 110 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~-~--~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~---~~~~~~ 110 (430)
.++|||.+|+..+.. + ++.++++|||+|||++++..+.....++|||||+..|++||.+++.++. .. .....+
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg 334 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTS 334 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEec
Confidence 599999999999874 3 4789999999999999987777667789999999999999999999863 11 111111
Q ss_pred CchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHH----------HHHhhhcCCccEEEEecCccccccCCCcHHH
Q 014134 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK----------LKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180 (430)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~----------~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~ 180 (430)
... . . ......+ +|+|+..+.. .........+++||+||||++..
T Consensus 335 ~~k----~----~---~~~~~~V------vVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA-------- 389 (732)
T TIGR00603 335 DAK----E----R---FHGEAGV------VVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA-------- 389 (732)
T ss_pred Ccc----c----c---cccCCcE------EEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH--------
Confidence 100 0 0 0011233 5666654321 22333345689999999999854
Q ss_pred HHHHHHHHhhCCCCcEEEEEcCCCchhHH--HHHHHhCCCCCeEEecc--------CCCCceEEEEEec-----------
Q 014134 181 YRKLSSLRNYLPDVPILALTATAAPKVQK--DVMESLCLQNPLVLKSS--------FNRPNLFYEVRYK----------- 239 (430)
Q Consensus 181 ~~~l~~~~~~~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~----------- 239 (430)
..+..+...++....++|||||...... .+...+ .|.++... +-.+.....+...
T Consensus 390 -~~fr~il~~l~a~~RLGLTATP~ReD~~~~~L~~Li---GP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~ 465 (732)
T TIGR00603 390 -AMFRRVLTIVQAHCKLGLTATLVREDDKITDLNFLI---GPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLR 465 (732)
T ss_pred -HHHHHHHHhcCcCcEEEEeecCcccCCchhhhhhhc---CCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHH
Confidence 3334445555556799999999864322 111111 22222211 1111000000000
Q ss_pred ----------CcchhHHHHHHHHHHhc--CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcC
Q 014134 240 ----------DLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307 (430)
Q Consensus 240 ----------~~~~~~~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 307 (430)
.....|+..+..+++.+ .+.++||||.+...++.++..| ++..+||++++.+|..+++.|++|
T Consensus 466 ~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~ 540 (732)
T TIGR00603 466 ENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQQERMQILQNFQHN 540 (732)
T ss_pred hcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----CCceEECCCCHHHHHHHHHHHHhC
Confidence 01124555555566544 6789999999999998888877 256789999999999999999975
Q ss_pred -CceEEEEeccccccccccCceEEEEecCC-CCHHHHHHHhccCCCCCCCceE-------EEeeCccchH
Q 014134 308 -RKQVVVATVAFGMGIDRKDVRLVCHFNIP-KSMEAFYQESGRAGRDQLPSKS-------LLYYGMDDRR 368 (430)
Q Consensus 308 -~~~vLv~T~~~~~Gidi~~~~~vi~~~~p-~s~~~~~q~~GR~~R~g~~g~~-------i~~~~~~~~~ 368 (430)
.+++||+|+++.+|+|+|++++||+++.| .|..+|+||+||++|.+..|.+ +.+++.+..+
T Consensus 541 ~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 541 PKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred CCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 78999999999999999999999999987 5999999999999999866554 7777776443
No 70
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=5.4e-35 Score=276.72 Aligned_cols=336 Identities=19% Similarity=0.266 Sum_probs=265.4
Q ss_pred CCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcC------CCEEEEcCCCChHHHHhHHhhh---cCCCeEEEEcch
Q 014134 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPL 87 (430)
Q Consensus 17 ~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~------~~~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt 87 (430)
-.+++...++.+.+.+.++|. ||..|++++..|... .+=+++|..|||||++++++++ ..+.++..++||
T Consensus 242 ~~~~~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPT 320 (677)
T COG1200 242 GIPLPANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPT 320 (677)
T ss_pred CCCCCccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccH
Confidence 345666667777777779996 999999999999853 4679999999999999988776 568999999999
Q ss_pred HHHHHHHHHHHHH----cCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEE
Q 014134 88 IALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (430)
Q Consensus 88 ~~L~~q~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lV 163 (430)
.-||+|.++.+.+ +|+.+..+++....+.+......+.+...++ +|+|+..+. +...+.++.++|
T Consensus 321 EILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~i--------vVGTHALiQ---d~V~F~~LgLVI 389 (677)
T COG1200 321 EILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDI--------VVGTHALIQ---DKVEFHNLGLVI 389 (677)
T ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCE--------EEEcchhhh---cceeecceeEEE
Confidence 9999999988766 5777888888888888888888888777555 888987443 444566688999
Q ss_pred EecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEe-ccCCCCceEEEEEecCc
Q 014134 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK-SSFNRPNLFYEVRYKDL 241 (430)
Q Consensus 164 iDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 241 (430)
+||-|++ |. .+-..+...-. ...++.|||||-|.+.. ...++.-+..++. -...+..+...+...+.
T Consensus 390 iDEQHRF---GV------~QR~~L~~KG~~~Ph~LvMTATPIPRTLA--lt~fgDldvS~IdElP~GRkpI~T~~i~~~~ 458 (677)
T COG1200 390 IDEQHRF---GV------HQRLALREKGEQNPHVLVMTATPIPRTLA--LTAFGDLDVSIIDELPPGRKPITTVVIPHER 458 (677)
T ss_pred Eeccccc---cH------HHHHHHHHhCCCCCcEEEEeCCCchHHHH--HHHhccccchhhccCCCCCCceEEEEecccc
Confidence 9999994 42 22234555544 56799999999998665 4444444444443 45556777777777776
Q ss_pred chhHHHHHHHHHHhcCCceEEEEeCcccc--------HHHHHHHHHcC--CCcceeecCCCCHHHHHHHHHHhhcCCceE
Q 014134 242 LDDAYADLCSVLKANGDTCAIVYCLERTT--------CDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (430)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~iVf~~s~~~--------~~~l~~~l~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~v 311 (430)
....++.+...+. ++.++.+.|+-+++ +..+++.|+.. +..+..+||+|++.++++++++|++|+++|
T Consensus 459 ~~~v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~I 536 (677)
T COG1200 459 RPEVYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDI 536 (677)
T ss_pred HHHHHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcE
Confidence 6777777777776 47789999986554 45666777753 456999999999999999999999999999
Q ss_pred EEEeccccccccccCceEEEEecCCC-CHHHHHHHhccCCCCCCCceEEEeeCccc----hHHHHHHHHhc
Q 014134 312 VVATVAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMDD----RRRMEFILSKN 377 (430)
Q Consensus 312 Lv~T~~~~~Gidi~~~~~vi~~~~p~-s~~~~~q~~GR~~R~g~~g~~i~~~~~~~----~~~~~~~~~~~ 377 (430)
||||.+++.|||+|+++++|+.+.-+ ..++..|..||+||.+..+.|+.++.+.. .++++.+.+..
T Consensus 537 LVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~ 607 (677)
T COG1200 537 LVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETT 607 (677)
T ss_pred EEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcC
Confidence 99999999999999999999988654 78899999999999999999999998876 45555554444
No 71
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.5e-35 Score=299.13 Aligned_cols=300 Identities=17% Similarity=0.183 Sum_probs=209.1
Q ss_pred HHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC---CCeEEEEcchHHHHHHHHHHHHH-cCcceeEeCCCchHHHHH
Q 014134 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKT 118 (430)
Q Consensus 43 Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~---~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~ 118 (430)
-.+.+..+.++++++++||||||||.++.+++++. ..+++++.|+|++|.|+++.+.. ++.......+.....
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~--- 86 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRA--- 86 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecC---
Confidence 34566667788999999999999999999999864 35899999999999999998854 433221111111000
Q ss_pred HHHhhhhcCCCceeEEEECCccccChhHHHHHHH-hhhcCCccEEEEecCcc-ccccCCCcHHHHHHHHHHHhh-CCCCc
Q 014134 119 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRNY-LPDVP 195 (430)
Q Consensus 119 ~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~-~~~~~~~~~lViDE~h~-~~~~~~~~~~~~~~l~~~~~~-~~~~~ 195 (430)
+...... +.+.|+||+.+.++.. ...+..+++||+||+|. ..+.. + .+..+..+... .++.|
T Consensus 87 ---~~~~~~~--------t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~D--l--~L~ll~~i~~~lr~~lq 151 (812)
T PRK11664 87 ---ESKVGPN--------TRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQAD--L--ALALLLDVQQGLRDDLK 151 (812)
T ss_pred ---ccccCCC--------CcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccc--h--HHHHHHHHHHhCCccce
Confidence 0000111 1238999998877654 33467799999999997 23211 1 11222333333 35789
Q ss_pred EEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCcchhHH-----HHHHHHHHhcCCceEEEEeCcccc
Q 014134 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAY-----ADLCSVLKANGDTCAIVYCLERTT 270 (430)
Q Consensus 196 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~l~~~~~~~~iVf~~s~~~ 270 (430)
+++||||++.... ..++. ..+. +........+...+..... ..++ ..+..++.. ..+.+|||+++..+
T Consensus 152 lilmSATl~~~~l---~~~~~-~~~~-I~~~gr~~pV~~~y~~~~~-~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~e 224 (812)
T PRK11664 152 LLIMSATLDNDRL---QQLLP-DAPV-IVSEGRSFPVERRYQPLPA-HQRFDEAVARATAELLRQ-ESGSLLLFLPGVGE 224 (812)
T ss_pred EEEEecCCCHHHH---HHhcC-CCCE-EEecCccccceEEeccCch-hhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHH
Confidence 9999999987533 33332 2222 2221111112222211111 1222 234444443 45789999999999
Q ss_pred HHHHHHHHHc---CCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCCC----------
Q 014134 271 CDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK---------- 337 (430)
Q Consensus 271 ~~~l~~~l~~---~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~---------- 337 (430)
++.+++.|++ .++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.+.
T Consensus 225 i~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~ 304 (812)
T PRK11664 225 IQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGL 304 (812)
T ss_pred HHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCc
Confidence 9999999987 467889999999999999999999999999999999999999999999999988764
Q ss_pred --------CHHHHHHHhccCCCCCCCceEEEeeCccchH
Q 014134 338 --------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (430)
Q Consensus 338 --------s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~ 368 (430)
|.++|.||.||+||. ..|.|+.++++.+..
T Consensus 305 ~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 305 TRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAE 342 (812)
T ss_pred ceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHh
Confidence 446899999999999 699999999986553
No 72
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.3e-34 Score=301.75 Aligned_cols=292 Identities=18% Similarity=0.245 Sum_probs=197.2
Q ss_pred HHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh----cCCCeEEEEcchHHHHHHHHHHHH
Q 014134 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLK 99 (430)
Q Consensus 24 ~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l----~~~~~~lil~Pt~~L~~q~~~~~~ 99 (430)
.++.+.+.+..|+ +|+++|..+++.++.|++++++||||+|||. |.++++ .++.+++|++||++|+.|+++.+.
T Consensus 65 ~~f~~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 65 KEFEEFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHH
Confidence 3444455554455 6999999999999999999999999999997 444442 347899999999999999999998
Q ss_pred HcCc----cee---EeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccc
Q 014134 100 EKGI----AGE---FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (430)
Q Consensus 100 ~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~ 172 (430)
.+.. ... ...++............+.....++ +|+||+++.+....... .++++|+||||++++
T Consensus 143 ~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dI--------lV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 143 SLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDI--------LITTTMFLSKNYDELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCE--------EEECHHHHHHHHHHhcC-CCCEEEEeChHhhhh
Confidence 8642 211 1233333333333333333333333 99999988876554333 799999999999987
Q ss_pred cCC---------CcHHH-HHH-------------------HHHHHhhCC-CCc--EEEEEcCC-CchhHHHHHHHhCCCC
Q 014134 173 WGH---------DFRPS-YRK-------------------LSSLRNYLP-DVP--ILALTATA-APKVQKDVMESLCLQN 219 (430)
Q Consensus 173 ~~~---------~~~~~-~~~-------------------l~~~~~~~~-~~~--~i~~SAT~-~~~~~~~~~~~~~~~~ 219 (430)
.+. .|.+. +.. +..+....| +.| ++++|||. +......+...+ -
T Consensus 214 ~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~l---l 290 (1171)
T TIGR01054 214 ASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFREL---L 290 (1171)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccc---c
Confidence 321 13321 111 111222223 334 67789995 444332221111 1
Q ss_pred CeEEe-ccCCCCceEEEEEecCcchhHHHHHHHHHHhcCCceEEEEeCcc---ccHHHHHHHHHcCCCcceeecCCCCHH
Q 014134 220 PLVLK-SSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER---TTCDELSAYLSAGGISCAAYHAGLNDK 295 (430)
Q Consensus 220 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~---~~~~~l~~~l~~~~~~~~~~hg~~~~~ 295 (430)
.+.+. ......++...+.... .+...+.++++.. +.++||||+++ +.|+.+++.|.+.|+++..+||++++
T Consensus 291 ~~~v~~~~~~~r~I~~~~~~~~---~~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~- 365 (1171)
T TIGR01054 291 GFEVGGGSDTLRNVVDVYVEDE---DLKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK- 365 (1171)
T ss_pred ceEecCccccccceEEEEEecc---cHHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH-
Confidence 11111 1122234433333222 1234566777664 35799999999 99999999999999999999999973
Q ss_pred HHHHHHHHhhcCCceEEEEe----ccccccccccC-ceEEEEecCCC
Q 014134 296 ARSSVLDDWISSRKQVVVAT----VAFGMGIDRKD-VRLVCHFNIPK 337 (430)
Q Consensus 296 ~r~~~~~~f~~g~~~vLv~T----~~~~~Gidi~~-~~~vi~~~~p~ 337 (430)
.+++.|++|+++||||| ++++||+|+|+ +++||+|++|.
T Consensus 366 ---~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 ---EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred ---HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 68999999999999995 89999999999 89999998874
No 73
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=2.3e-35 Score=283.25 Aligned_cols=323 Identities=21% Similarity=0.248 Sum_probs=217.9
Q ss_pred CCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC-----CCeEEEEcchHHHHHHHHHHHHHcCcceeEeC
Q 014134 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (430)
Q Consensus 35 g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~-----~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 109 (430)
+.-.+|+||.+.+...+ ++|.+|++|||+|||+++...+++. ..++++++|++-|+.|....+..++.......
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T~ 137 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSVTG 137 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCccccee
Confidence 34479999999999999 9999999999999999988877643 67999999999999999977777664421111
Q ss_pred CCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhh---cCCccEEEEecCccccccCCCcHHHHHHHHH
Q 014134 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS---RGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (430)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~---~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~ 186 (430)
.... .........+..+..+++.||..+.+.+.... ++.+.++||||||+-.. ++.+...++.+..
T Consensus 138 ~l~~----------~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~k-n~~Y~~Vmr~~l~ 206 (746)
T KOG0354|consen 138 QLGD----------TVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSK-NHPYNNIMREYLD 206 (746)
T ss_pred eccC----------ccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccc-cccHHHHHHHHHH
Confidence 1110 01111112333444458999997776654333 35589999999999764 3346555555544
Q ss_pred HHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCe--------------------EEeccCC------------------
Q 014134 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL--------------------VLKSSFN------------------ 228 (430)
Q Consensus 187 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~------------------ 228 (430)
.... ..|++++||||..+... +...+...... .+.....
T Consensus 207 ~k~~--~~qILgLTASpG~~~~~-v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l 283 (746)
T KOG0354|consen 207 LKNQ--GNQILGLTASPGSKLEQ-VQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLL 283 (746)
T ss_pred hhhc--cccEEEEecCCCccHHH-HHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHH
Confidence 4443 34999999999864332 11111100000 0000000
Q ss_pred ------------CCc-------------------------------------------eE--------------------
Q 014134 229 ------------RPN-------------------------------------------LF-------------------- 233 (430)
Q Consensus 229 ------------~~~-------------------------------------------~~-------------------- 233 (430)
... +.
T Consensus 284 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~ 363 (746)
T KOG0354|consen 284 QQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKY 363 (746)
T ss_pred HHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHH
Confidence 000 00
Q ss_pred ---------------------EEEEecCcchhHHHHHHHHHHh----cCCceEEEEeCccccHHHHHHHHHcC---CCcc
Q 014134 234 ---------------------YEVRYKDLLDDAYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSAG---GISC 285 (430)
Q Consensus 234 ---------------------~~~~~~~~~~~~~~~l~~~l~~----~~~~~~iVf~~s~~~~~~l~~~l~~~---~~~~ 285 (430)
.........++++..+.+.+.+ .+..++|||+.+++.|..+...|.+. ++..
T Consensus 364 ~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~ 443 (746)
T KOG0354|consen 364 LKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKA 443 (746)
T ss_pred HHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhccccc
Confidence 0000000001455555555533 36778999999999999999999831 2222
Q ss_pred e--------eecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCce
Q 014134 286 A--------AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357 (430)
Q Consensus 286 ~--------~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~ 357 (430)
. .-..+|++.+..++++.|++|+++|||||+++++|+|++.|++||-||...|+..++||.|| ||+ +.|.
T Consensus 444 ~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~ 521 (746)
T KOG0354|consen 444 EIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSK 521 (746)
T ss_pred ceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCe
Confidence 2 22357999999999999999999999999999999999999999999999999999999999 998 6788
Q ss_pred EEEeeCccchHHHHHHH
Q 014134 358 SLLYYGMDDRRRMEFIL 374 (430)
Q Consensus 358 ~i~~~~~~~~~~~~~~~ 374 (430)
++.+++..+...++...
T Consensus 522 ~vll~t~~~~~~~E~~~ 538 (746)
T KOG0354|consen 522 CVLLTTGSEVIEFERNN 538 (746)
T ss_pred EEEEEcchhHHHHHHHH
Confidence 88888865554444443
No 74
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-36 Score=251.28 Aligned_cols=314 Identities=15% Similarity=0.209 Sum_probs=227.7
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC------CCeEEEEcc
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~------~~~~lil~P 86 (430)
-+..|.++-+.|++++++-. .||+.|++.|.+++|...-|.|++++|..|.|||.+|.++-+++ ...++++|.
T Consensus 40 hssgfrdfllkpellraivd-cgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmch 118 (387)
T KOG0329|consen 40 HSSGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCH 118 (387)
T ss_pred eccchhhhhcCHHHHHHHHh-ccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEec
Confidence 35568889999999999998 79999999999999999999999999999999999999988865 346899999
Q ss_pred hHHHHHHHHHHHHHc-----CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHH--hhhcCCc
Q 014134 87 LIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLL 159 (430)
Q Consensus 87 t~~L~~q~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~--~~~~~~~ 159 (430)
||+||-|+.+++..+ +....+..++............ .+. ++|+||+++..+.+ ..+++++
T Consensus 119 trelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~Ph--------ivVgTPGrilALvr~k~l~lk~v 186 (387)
T KOG0329|consen 119 TRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPH--------IVVGTPGRILALVRNRSLNLKNV 186 (387)
T ss_pred cHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCe--------EEEcCcHHHHHHHHhccCchhhc
Confidence 999999999887664 2334444444433332222211 222 28999999999865 4556778
Q ss_pred cEEEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccC--CCCceEEEE
Q 014134 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF--NRPNLFYEV 236 (430)
Q Consensus 160 ~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 236 (430)
...|+||||.++++- .-.+.+.++.+..| ..|+..+|||++.+...-..+++..+-.+++..+. ....+...
T Consensus 187 khFvlDEcdkmle~l----DMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~- 261 (387)
T KOG0329|consen 187 KHFVLDECDKMLEQL----DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQY- 261 (387)
T ss_pred ceeehhhHHHHHHHH----HHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHH-
Confidence 899999999987621 11255566666666 66799999999998777555555433333222211 11111111
Q ss_pred EecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEec
Q 014134 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (430)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (430)
..+-...+|-..+.+++....-.+++||+.+..... | +.+ +|+|+
T Consensus 262 YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~Rl~-------------------------------f---~kr-~vat~ 306 (387)
T KOG0329|consen 262 YVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQRLS-------------------------------F---QKR-LVATD 306 (387)
T ss_pred HHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhhhh-------------------------------h---hhh-hHHhh
Confidence 111222445555566665555568999998765510 2 123 89999
Q ss_pred cccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCcc-chHHHHHHHHhccC
Q 014134 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSKNQS 379 (430)
Q Consensus 317 ~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~-~~~~~~~~~~~~~~ 379 (430)
..+||+|+..++.+|+||.|.+..+|+||+||+||.|..|.+++|+... +...+..+.+....
T Consensus 307 lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v 370 (387)
T KOG0329|consen 307 LFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEV 370 (387)
T ss_pred hhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhc
Confidence 9999999999999999999999999999999999999999999998765 45555555554433
No 75
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.3e-33 Score=291.25 Aligned_cols=313 Identities=21% Similarity=0.258 Sum_probs=217.2
Q ss_pred CCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc----CCCeEEEEcchHHHHHHHHHHHHHc-Cc---cee
Q 014134 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEK-GI---AGE 106 (430)
Q Consensus 35 g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~----~~~~~lil~Pt~~L~~q~~~~~~~~-~~---~~~ 106 (430)
+..++++||.+++..++.+ |+++++|||+|||.++++++.. .+.++||++||++|+.|+.+.++.+ +. ...
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~ 90 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIV 90 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEE
Confidence 3447899999999988877 9999999999999988766653 3679999999999999999999885 33 333
Q ss_pred EeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHH--HhhhcCCccEEEEecCccccccCCCcHHHHHHH
Q 014134 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL 184 (430)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~--~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l 184 (430)
...+......+...+.. .++ +++||..+.... .......+++||+||||++.... .+. ..+
T Consensus 91 ~~~g~~~~~~r~~~~~~-------~~i------iv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~-~~~---~i~ 153 (773)
T PRK13766 91 VFTGEVSPEKRAELWEK-------AKV------IVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNY-AYV---YIA 153 (773)
T ss_pred EEeCCCCHHHHHHHHhC-------CCE------EEECHHHHHHHHHcCCCChhhCcEEEEECCccccccc-cHH---HHH
Confidence 34443333333223221 122 888998665543 23445668999999999986421 122 122
Q ss_pred HHHHhhCCCCcEEEEEcCCCchhH--HHHHHHhCCCCC-------------------eEEec------------------
Q 014134 185 SSLRNYLPDVPILALTATAAPKVQ--KDVMESLCLQNP-------------------LVLKS------------------ 225 (430)
Q Consensus 185 ~~~~~~~~~~~~i~~SAT~~~~~~--~~~~~~~~~~~~-------------------~~~~~------------------ 225 (430)
.......+...+++|||||..... ..+...+..... ..+..
T Consensus 154 ~~~~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~ 233 (773)
T PRK13766 154 ERYHEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALK 233 (773)
T ss_pred HHHHhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHH
Confidence 223333345669999999854311 111111111000 00000
Q ss_pred ---------cCC--CC-------------ceEE----------------------------------------------E
Q 014134 226 ---------SFN--RP-------------NLFY----------------------------------------------E 235 (430)
Q Consensus 226 ---------~~~--~~-------------~~~~----------------------------------------------~ 235 (430)
... .. .+.. .
T Consensus 234 ~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~ 313 (773)
T PRK13766 234 DRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREE 313 (773)
T ss_pred HHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhh
Confidence 000 00 0000 0
Q ss_pred -------------------------EEecCcchhHHHHHHHHHHh----cCCceEEEEeCccccHHHHHHHHHcCCCcce
Q 014134 236 -------------------------VRYKDLLDDAYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSAGGISCA 286 (430)
Q Consensus 236 -------------------------~~~~~~~~~~~~~l~~~l~~----~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~ 286 (430)
.........|+..+.+++++ .++.++||||+++..|+.+++.|...++.+.
T Consensus 314 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~ 393 (773)
T PRK13766 314 ARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAV 393 (773)
T ss_pred ccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceE
Confidence 00001112455566666654 4678999999999999999999999899988
Q ss_pred eecCC--------CCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceE
Q 014134 287 AYHAG--------LNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKS 358 (430)
Q Consensus 287 ~~hg~--------~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~ 358 (430)
.+||. +++.+|..+++.|++|+.++||+|+++++|+|+|.+++||+|++|+++..|+||+||+||.|. |.+
T Consensus 394 ~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v 472 (773)
T PRK13766 394 RFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRV 472 (773)
T ss_pred EEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEE
Confidence 88886 999999999999999999999999999999999999999999999999999999999999865 788
Q ss_pred EEeeCccc
Q 014134 359 LLYYGMDD 366 (430)
Q Consensus 359 i~~~~~~~ 366 (430)
++++....
T Consensus 473 ~~l~~~~t 480 (773)
T PRK13766 473 VVLIAKGT 480 (773)
T ss_pred EEEEeCCC
Confidence 88876654
No 76
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=7.4e-34 Score=275.20 Aligned_cols=320 Identities=19% Similarity=0.156 Sum_probs=217.5
Q ss_pred HhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC---CCeEEEEcchHHHHHHHHHHHHH----cCcc
Q 014134 32 WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE----KGIA 104 (430)
Q Consensus 32 ~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~---~~~~lil~Pt~~L~~q~~~~~~~----~~~~ 104 (430)
+.+|+. |+++|..+++.++.|+ ++.+.||+|||+++.+|++.. +..++|++||++||.|.++++.. +|+.
T Consensus 98 R~lg~~-p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGls 174 (656)
T PRK12898 98 RVLGQR-HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLT 174 (656)
T ss_pred HHhCCC-CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCE
Confidence 445764 8999999999999999 999999999999999999743 78999999999999999998877 4667
Q ss_pred eeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHH----------------------hhhcCCccEE
Q 014134 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK----------------------IHSRGLLNLV 162 (430)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~----------------------~~~~~~~~~l 162 (430)
+....++......... ..++|+++|.--++-.-...++.. ..-...+.+.
T Consensus 175 v~~i~gg~~~~~r~~~--------y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~a 246 (656)
T PRK12898 175 VGCVVEDQSPDERRAA--------YGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFA 246 (656)
T ss_pred EEEEeCCCCHHHHHHH--------cCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccccccee
Confidence 6666655433222211 124554444321111000000000 0112347789
Q ss_pred EEecCcccc-c--------cCC---C-cHHHHHHHHHHHh----------------------------------------
Q 014134 163 AIDEAHCIS-S--------WGH---D-FRPSYRKLSSLRN---------------------------------------- 189 (430)
Q Consensus 163 ViDE~h~~~-~--------~~~---~-~~~~~~~l~~~~~---------------------------------------- 189 (430)
|+||+|.++ | .|. . ....+.....+..
T Consensus 247 IvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~ 326 (656)
T PRK12898 247 IVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRG 326 (656)
T ss_pred EeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhccc
Confidence 999999873 1 000 0 0000000000000
Q ss_pred -------------h---C----------------------------------------------C---------------
Q 014134 190 -------------Y---L----------------------------------------------P--------------- 192 (430)
Q Consensus 190 -------------~---~----------------------------------------------~--------------- 192 (430)
. + +
T Consensus 327 ~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr 406 (656)
T PRK12898 327 AVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFR 406 (656)
T ss_pred chHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHH
Confidence 0 0 0
Q ss_pred -CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCcchhHHHHHHHHHHhc--CCceEEEEeCccc
Q 014134 193 -DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERT 269 (430)
Q Consensus 193 -~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~iVf~~s~~ 269 (430)
-.++.+||||.... ..++...+.. ++..+.....................|+..+.+.+... .+.++||||+|++
T Consensus 407 ~Y~kl~GmTGTa~~~-~~El~~~y~l-~vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~ 484 (656)
T PRK12898 407 RYLRLAGMTGTAREV-AGELWSVYGL-PVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVA 484 (656)
T ss_pred hhHHHhcccCcChHH-HHHHHHHHCC-CeEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 01578899998865 3455555544 34444433222211222222223467888888888663 3568999999999
Q ss_pred cHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecccccccccc---Cce-----EEEEecCCCCHHH
Q 014134 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---DVR-----LVCHFNIPKSMEA 341 (430)
Q Consensus 270 ~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~---~~~-----~vi~~~~p~s~~~ 341 (430)
.++.+++.|.+.|+++..+||+++. |+..+..|+.+...|+|||++++||+|++ ++. +||+++.|.|...
T Consensus 485 ~se~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~ 562 (656)
T PRK12898 485 ASERLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARI 562 (656)
T ss_pred HHHHHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHH
Confidence 9999999999999999999998654 45555556666667999999999999999 665 9999999999999
Q ss_pred HHHHhccCCCCCCCceEEEeeCccc
Q 014134 342 FYQESGRAGRDQLPSKSLLYYGMDD 366 (430)
Q Consensus 342 ~~q~~GR~~R~g~~g~~i~~~~~~~ 366 (430)
|.||+||+||.|..|.+++|++.+|
T Consensus 563 y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 563 DRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred HHHhcccccCCCCCeEEEEEechhH
Confidence 9999999999999999999998865
No 77
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=4e-34 Score=289.13 Aligned_cols=327 Identities=23% Similarity=0.280 Sum_probs=243.1
Q ss_pred HHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC-----CCeEEEEcchHHHHHHHHHHH
Q 014134 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIGL 98 (430)
Q Consensus 24 ~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~-----~~~~lil~Pt~~L~~q~~~~~ 98 (430)
..+...|.. .|...|+.||.+|+..+.+|+|++|..|||||||.+|++|+++. ..++|+|-||++|++.+.+++
T Consensus 57 ~~l~~~l~~-~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl 135 (851)
T COG1205 57 ESLKSALVK-AGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERL 135 (851)
T ss_pred hHHHHHHHH-hccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHH
Confidence 334666766 58888999999999999999999999999999999999999853 557899999999999999998
Q ss_pred HHc----C--cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHH------HhhhcCCccEEEEec
Q 014134 99 KEK----G--IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK------KIHSRGLLNLVAIDE 166 (430)
Q Consensus 99 ~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~------~~~~~~~~~~lViDE 166 (430)
.++ + +....+++........ .+.... .+| +++||.++..++ ......++++||+||
T Consensus 136 ~~~~~~~~~~v~~~~y~Gdt~~~~r~----~~~~~p--p~I------llTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDE 203 (851)
T COG1205 136 RELISDLPGKVTFGRYTGDTPPEERR----AIIRNP--PDI------LLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDE 203 (851)
T ss_pred HHHHHhCCCcceeeeecCCCChHHHH----HHHhCC--CCE------EEeCHHHHHHHhccCcchHHHHHhcCcEEEEec
Confidence 885 3 3344444444444333 222233 333 777777666632 123345599999999
Q ss_pred Ccccc-ccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeE-EeccCCCCceEEEEEecCc--
Q 014134 167 AHCIS-SWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKDL-- 241 (430)
Q Consensus 167 ~h~~~-~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-- 241 (430)
+|.+- -.|.+..-+++++...++..+ +.|+|+.|||+.+... ....+....... +..+..+......+.....
T Consensus 204 lHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e--~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~ 281 (851)
T COG1205 204 LHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGE--FAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIR 281 (851)
T ss_pred ceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHH--HHHHhcCCcceeeccCCCCCCCceEEEEeCCcch
Confidence 99984 356667778888888888776 6789999999988633 344444444333 4443334333444333330
Q ss_pred ------chhHHHHHHHHHHh--cCCceEEEEeCccccHHHHH----HHHHcCC----CcceeecCCCCHHHHHHHHHHhh
Q 014134 242 ------LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELS----AYLSAGG----ISCAAYHAGLNDKARSSVLDDWI 305 (430)
Q Consensus 242 ------~~~~~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~----~~l~~~~----~~~~~~hg~~~~~~r~~~~~~f~ 305 (430)
..........+... ..+-++|+|+.+++.++.++ ..+...+ ..+..++|++...+|..++..|+
T Consensus 282 ~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~ 361 (851)
T COG1205 282 ELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFK 361 (851)
T ss_pred hhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHh
Confidence 11223333333322 15678999999999999997 3444444 45789999999999999999999
Q ss_pred cCCceEEEEeccccccccccCceEEEEecCCC-CHHHHHHHhccCCCCCCCceEEEeeCcc
Q 014134 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (430)
Q Consensus 306 ~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~-s~~~~~q~~GR~~R~g~~g~~i~~~~~~ 365 (430)
+|+..++++|.++.-|+|+.+++.||.++.|. +..++.|+.||+||.++.+..+++...+
T Consensus 362 ~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 362 EGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred cCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 99999999999999999999999999999999 8999999999999999777777776644
No 78
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.7e-33 Score=277.05 Aligned_cols=313 Identities=21% Similarity=0.205 Sum_probs=221.0
Q ss_pred HHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh---cCCCeEEEEcchHHHHHHHHHHHHH----cCc
Q 014134 31 RWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE----KGI 103 (430)
Q Consensus 31 ~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt~~L~~q~~~~~~~----~~~ 103 (430)
.+.+|+ .|+++|..+.+.+..|+ ++.+.||+|||+++.+|++ ..+..+.|++||++||.|.++++.. +|+
T Consensus 72 ~R~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl 148 (790)
T PRK09200 72 KRVLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGL 148 (790)
T ss_pred HHHhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 345576 58999999998888776 9999999999999999987 3588999999999999999988776 467
Q ss_pred ceeEeCCCch-HHHHHHHHhhhhcCCCceeEEEECCccccChhHH-HHH-HH-------hhhcCCccEEEEecCccccc-
Q 014134 104 AGEFLSSTQT-MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM-SKL-KK-------IHSRGLLNLVAIDEAHCISS- 172 (430)
Q Consensus 104 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~-~~~-~~-------~~~~~~~~~lViDE~h~~~~- 172 (430)
.+....+... .......+ .++| +++||+.+ .++ .. ......+.++|+||+|.++=
T Consensus 149 ~v~~i~g~~~~~~~r~~~y--------~~dI------vygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiD 214 (790)
T PRK09200 149 TVGLNFSDIDDASEKKAIY--------EADI------IYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLD 214 (790)
T ss_pred eEEEEeCCCCcHHHHHHhc--------CCCE------EEECCccccchhHHhccccchhhhcccccceEEEeccccceec
Confidence 7776666554 32222111 1233 88888765 121 11 12345688999999999831
Q ss_pred --------cCC--CcHHHHHHHHHHHhhC---------------------------------------------------
Q 014134 173 --------WGH--DFRPSYRKLSSLRNYL--------------------------------------------------- 191 (430)
Q Consensus 173 --------~~~--~~~~~~~~l~~~~~~~--------------------------------------------------- 191 (430)
.|. .....+.....+...+
T Consensus 215 ea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~ 294 (790)
T PRK09200 215 EAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALR 294 (790)
T ss_pred cCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHH
Confidence 000 0000000000000000
Q ss_pred ---------------------------------------------------C----------------CCcEEEEEcCCC
Q 014134 192 ---------------------------------------------------P----------------DVPILALTATAA 204 (430)
Q Consensus 192 ---------------------------------------------------~----------------~~~~i~~SAT~~ 204 (430)
+ -.++.+||+|..
T Consensus 295 A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~ 374 (790)
T PRK09200 295 AHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAK 374 (790)
T ss_pred HHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCCh
Confidence 0 004677777764
Q ss_pred chhHHHHHHHhCCCCCeEEeccCCCCceEEEE--EecCcchhHHHHHHHHHHh--cCCceEEEEeCccccHHHHHHHHHc
Q 014134 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSA 280 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~ 280 (430)
... .++...++. .++....+.+...... ........+...+.+.+.. ..+.++||||+|++.++.++..|.+
T Consensus 375 t~~-~e~~~~Y~l---~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~ 450 (790)
T PRK09200 375 TEE-KEFFEVYNM---EVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDE 450 (790)
T ss_pred HHH-HHHHHHhCC---cEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH
Confidence 432 333333322 2223333344332211 1222335688888888765 3678999999999999999999999
Q ss_pred CCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccc---cCce-----EEEEecCCCCHHHHHHHhccCCCC
Q 014134 281 GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR---KDVR-----LVCHFNIPKSMEAFYQESGRAGRD 352 (430)
Q Consensus 281 ~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi---~~~~-----~vi~~~~p~s~~~~~q~~GR~~R~ 352 (430)
.|+++..+||++.+.++..+..+++.| +|+|||++++||+|+ |+++ +||+++.|.|...|.||+||+||.
T Consensus 451 ~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~ 528 (790)
T PRK09200 451 AGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQ 528 (790)
T ss_pred CCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCC
Confidence 999999999999998888888777666 799999999999999 6898 999999999999999999999999
Q ss_pred CCCceEEEeeCccc
Q 014134 353 QLPSKSLLYYGMDD 366 (430)
Q Consensus 353 g~~g~~i~~~~~~~ 366 (430)
|.+|.+++|++.+|
T Consensus 529 G~~G~s~~~is~eD 542 (790)
T PRK09200 529 GDPGSSQFFISLED 542 (790)
T ss_pred CCCeeEEEEEcchH
Confidence 99999999998765
No 79
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=7.7e-33 Score=276.22 Aligned_cols=380 Identities=19% Similarity=0.169 Sum_probs=286.2
Q ss_pred cccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHc----C--CCEEEEcCCCChHHHHhHHhhh---cCCCeEE
Q 014134 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS----G--RDCFCLMPTGGGKSMCYQIPAL---AKPGIVL 82 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~----~--~~~lv~a~tGsGKT~~~~~~~l---~~~~~~l 82 (430)
.+...=-.++.+.+....+...|+|. -|+-|..||..+.+ + .|=++||..|.|||-+++-+++ ..+.+|.
T Consensus 569 R~~~~G~af~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVA 647 (1139)
T COG1197 569 RQAKKGFAFPPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVA 647 (1139)
T ss_pred HhhccCCCCCCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEE
Confidence 33444445677788888899999997 69999999999874 3 4889999999999999987765 5689999
Q ss_pred EEcchHHHHHHHHHHHHH----cCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCC
Q 014134 83 VVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGL 158 (430)
Q Consensus 83 il~Pt~~L~~q~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~ 158 (430)
+||||.-||+|.++.|++ +.+.+..++.....+....+.+++.....++ +|+|+..+ .+...+.+
T Consensus 648 vLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDI--------vIGTHrLL---~kdv~Fkd 716 (1139)
T COG1197 648 VLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDI--------VIGTHRLL---SKDVKFKD 716 (1139)
T ss_pred EEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccE--------EEechHhh---CCCcEEec
Confidence 999999999999998877 5677777888888888888888888777555 88887532 33445667
Q ss_pred ccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCC-CCceEEEEE
Q 014134 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVR 237 (430)
Q Consensus 159 ~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 237 (430)
++++|+||-|++ |.... ..+.....++-++-|||||-|.+.. +...+..+-.++.+.+. +-.+...+.
T Consensus 717 LGLlIIDEEqRF---GVk~K------EkLK~Lr~~VDvLTLSATPIPRTL~--Msm~GiRdlSvI~TPP~~R~pV~T~V~ 785 (1139)
T COG1197 717 LGLLIIDEEQRF---GVKHK------EKLKELRANVDVLTLSATPIPRTLN--MSLSGIRDLSVIATPPEDRLPVKTFVS 785 (1139)
T ss_pred CCeEEEechhhc---CccHH------HHHHHHhccCcEEEeeCCCCcchHH--HHHhcchhhhhccCCCCCCcceEEEEe
Confidence 889999999994 43222 3333344588899999999999887 55556666666655443 334444444
Q ss_pred ecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcC--CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEe
Q 014134 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (430)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T 315 (430)
..+ ..-.-+.+.+.+. .++++....|.++..+++++.|++. ...+++.||.|+..+-+.++..|.+|+.+|||||
T Consensus 786 ~~d-~~~ireAI~REl~--RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~T 862 (1139)
T COG1197 786 EYD-DLLIREAILRELL--RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCT 862 (1139)
T ss_pred cCC-hHHHHHHHHHHHh--cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEe
Confidence 443 2222333433333 4778999999999999999999986 5678999999999999999999999999999999
Q ss_pred ccccccccccCceEEEEecCCC-CHHHHHHHhccCCCCCCCceEEEeeCcc------chHHHHHHHHhccCCCCC-chhh
Q 014134 316 VAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD------DRRRMEFILSKNQSKNSQ-SFST 387 (430)
Q Consensus 316 ~~~~~Gidi~~~~~vi~~~~p~-s~~~~~q~~GR~~R~g~~g~~i~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~ 387 (430)
.+++.|||+|+++.+|..+... ..++..|..||+||.++.+.|+.++.+. ..++++.+.+........ +...
T Consensus 863 TIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~~~~LGaGf~lA~~ 942 (1139)
T COG1197 863 TIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIASFTELGAGFKLAMH 942 (1139)
T ss_pred eeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHhhhhcCchHHHHhc
Confidence 9999999999999999877653 7899999999999999999999998753 345555554433222221 2222
Q ss_pred hHHHHHHhhhhccccccceeecCcceeeee
Q 014134 388 RERWLITVKVLDVAGKRFSRVLGNRYLYHY 417 (430)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (430)
--+.+-.-++++..|+++-+..+++..-.+
T Consensus 943 DLeIRGaGNlLG~eQSG~I~~VGf~LY~~m 972 (1139)
T COG1197 943 DLEIRGAGNLLGEEQSGHIESVGFDLYMEM 972 (1139)
T ss_pred chhccccccccCccccCchheecHHHHHHH
Confidence 234455566788888888777777665444
No 80
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.7e-32 Score=277.85 Aligned_cols=314 Identities=18% Similarity=0.167 Sum_probs=213.9
Q ss_pred cchHHHHHHHHHHHcC--CCEEEEcCCCChHHHHhHHhhh---c--CCCeEEEEcchHHHHHHHHHHHH-HcCcceeEeC
Q 014134 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPAL---A--KPGIVLVVSPLIALMENQVIGLK-EKGIAGEFLS 109 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~--~~~lv~a~tGsGKT~~~~~~~l---~--~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~~~ 109 (430)
.|.|||..+...++.. ..+++...+|.|||+-+.+.+. . ...++|||||. .|..||..++. .++....+..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~~ 230 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSLFD 230 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEEc
Confidence 4999999998877654 4799999999999987765442 2 24689999998 79999999985 4665555444
Q ss_pred CCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHH---HHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHH
Q 014134 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK---LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (430)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~---~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~ 186 (430)
....... .......-...++ +|++.+.+.. .........+++||+||||++..........+..+..
T Consensus 231 ~~~~~~~----~~~~~~pf~~~~~------vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~ 300 (956)
T PRK04914 231 EERYAEA----QHDADNPFETEQL------VICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQ 300 (956)
T ss_pred Ccchhhh----cccccCccccCcE------EEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHH
Confidence 3321111 0000011011233 5555554433 2222334468999999999997432222333555555
Q ss_pred HHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeE--------------------------------------------
Q 014134 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLV-------------------------------------------- 222 (430)
Q Consensus 187 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 222 (430)
+... ...++++||||......+++..+...+|..
T Consensus 301 La~~--~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~ 378 (956)
T PRK04914 301 LAEV--IPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGE 378 (956)
T ss_pred Hhhc--cCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcc
Confidence 5443 235999999987532222222222111111
Q ss_pred --------------------------------------Eec------cCCCCceEEEEEe--------------------
Q 014134 223 --------------------------------------LKS------SFNRPNLFYEVRY-------------------- 238 (430)
Q Consensus 223 --------------------------------------~~~------~~~~~~~~~~~~~-------------------- 238 (430)
++. .+. ......+..
T Consensus 379 ~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp-~R~~~~~~l~~~~~y~~~~~~~~~~~~~~ 457 (956)
T PRK04914 379 QDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFP-KRELHPIPLPLPEQYQTAIKVSLEARARD 457 (956)
T ss_pred cchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCC-cCceeEeecCCCHHHHHHHHHhHHHHHHh
Confidence 000 000 000000000
Q ss_pred ----------------cCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHH-cCCCcceeecCCCCHHHHHHHH
Q 014134 239 ----------------KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLS-AGGISCAAYHAGLNDKARSSVL 301 (430)
Q Consensus 239 ----------------~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~-~~~~~~~~~hg~~~~~~r~~~~ 301 (430)
....+.|++.+.++++...+.|+||||+++..+..+++.|+ ..|+.+..+||+|++.+|..++
T Consensus 458 ~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~ 537 (956)
T PRK04914 458 MLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAA 537 (956)
T ss_pred hcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHH
Confidence 00113466678888887778899999999999999999994 5699999999999999999999
Q ss_pred HHhhcC--CceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCcc
Q 014134 302 DDWISS--RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (430)
Q Consensus 302 ~~f~~g--~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~ 365 (430)
+.|+++ ..+|||||+++++|+|++.+++||+||+|+++..|.||+||++|.|+.+.+.++....
T Consensus 538 ~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~ 603 (956)
T PRK04914 538 AYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYL 603 (956)
T ss_pred HHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccC
Confidence 999974 5999999999999999999999999999999999999999999999999877766443
No 81
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=3.8e-33 Score=266.42 Aligned_cols=292 Identities=19% Similarity=0.242 Sum_probs=205.5
Q ss_pred ccchHHHHHHHHHHHc----CCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCcce---eEeC
Q 014134 37 AQFRDKQLDAIQAVLS----GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAG---EFLS 109 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~~----~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~---~~~~ 109 (430)
..|+++|.+|+..+.+ ++..++++|||+|||.+++..+..-...+|||||+++|+.||.+.+....... ....
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~~ 114 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIGIYG 114 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCccccceec
Confidence 3599999999999998 88999999999999999988887777779999999999999987776643221 1110
Q ss_pred CCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHH--HHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHH
Q 014134 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (430)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~--~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~ 187 (430)
+ +...... ..+ .|+|...+... +.....+.+++||+||||++.+.. ...+
T Consensus 115 ~------------~~~~~~~-~~i------~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~---------~~~~ 166 (442)
T COG1061 115 G------------GEKELEP-AKV------TVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS---------YRRI 166 (442)
T ss_pred C------------ceeccCC-CcE------EEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH---------HHHH
Confidence 0 0001111 122 56666544442 233334468999999999987633 2334
Q ss_pred HhhCCCCc-EEEEEcCCCchhHHHHHHHhCCCCCeEEecc--------CCCCceEEEEEecC------------------
Q 014134 188 RNYLPDVP-ILALTATAAPKVQKDVMESLCLQNPLVLKSS--------FNRPNLFYEVRYKD------------------ 240 (430)
Q Consensus 188 ~~~~~~~~-~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~------------------ 240 (430)
...+.... +++|||||................+.++... ...+..........
T Consensus 167 ~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~ 246 (442)
T COG1061 167 LELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFREL 246 (442)
T ss_pred HHhhhcccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhh
Confidence 44444555 9999999886542222222222223333221 11111111111100
Q ss_pred ------------------cchhHHHHHHHHHHhc-CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHH
Q 014134 241 ------------------LLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVL 301 (430)
Q Consensus 241 ------------------~~~~~~~~l~~~l~~~-~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~ 301 (430)
....+...+..++... .+.+++|||.+..+++.++..+...+. +..+.|+.+..+|..++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il 325 (442)
T COG1061 247 LRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAIL 325 (442)
T ss_pred hhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHH
Confidence 0112333344444443 467999999999999999999988877 88999999999999999
Q ss_pred HHhhcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCC-CCCCce
Q 014134 302 DDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR-DQLPSK 357 (430)
Q Consensus 302 ~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R-~g~~g~ 357 (430)
+.|+.|.+++|+++.++.+|+|+|+++++|..++..|...|+||+||.-| ..+++.
T Consensus 326 ~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 326 ERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred HHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999 333443
No 82
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=3.4e-32 Score=272.25 Aligned_cols=312 Identities=19% Similarity=0.196 Sum_probs=218.5
Q ss_pred cchHHHHHHHHHHHcC---CCEEEEcCCCChHHHHhHHhh---hcCCCeEEEEcchHHHHHHHHHHHHH-cCcceeEeCC
Q 014134 38 QFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSS 110 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~---~~~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~ 110 (430)
.|++.|+++++.+.++ +++++.|+||+|||.+|+.++ +..+.++||++|+++|+.|+.+.+++ ++.....+++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s 223 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHS 223 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5899999999999874 789999999999999997665 45688999999999999999999987 6777777777
Q ss_pred CchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCC-cHHHHHHHHHHHh
Q 014134 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD-FRPSYRKLSSLRN 189 (430)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~-~~~~~~~l~~~~~ 189 (430)
..........+..+.....++ +|+|++.+. ....+++++|+||+|........ .......+.....
T Consensus 224 ~~s~~~r~~~~~~~~~g~~~I--------VVgTrsal~-----~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra 290 (679)
T PRK05580 224 GLSDGERLDEWRKAKRGEAKV--------VIGARSALF-----LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRA 290 (679)
T ss_pred CCCHHHHHHHHHHHHcCCCCE--------EEeccHHhc-----ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHh
Confidence 766666655665555444334 888886542 34667899999999986543211 1111234444455
Q ss_pred hCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCC---CCceEEEEEec--------CcchhHHHHHHHHHHhcCC
Q 014134 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYEVRYK--------DLLDDAYADLCSVLKANGD 258 (430)
Q Consensus 190 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--------~~~~~~~~~l~~~l~~~~~ 258 (430)
...+.+++++|||++.+....... +......+..... .+.+....... ......++.+.+.+. .+
T Consensus 291 ~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~--~g 366 (679)
T PRK05580 291 KLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLE--RG 366 (679)
T ss_pred hccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHH--cC
Confidence 567899999999998765543321 1111111111111 12221111000 011222233333332 46
Q ss_pred ceEEEEeCcc------------------------------------------------------------ccHHHHHHHH
Q 014134 259 TCAIVYCLER------------------------------------------------------------TTCDELSAYL 278 (430)
Q Consensus 259 ~~~iVf~~s~------------------------------------------------------------~~~~~l~~~l 278 (430)
+++|||+|.+ ..++.+++.|
T Consensus 367 ~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l 446 (679)
T PRK05580 367 EQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEEL 446 (679)
T ss_pred CeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHH
Confidence 6899998742 1457788888
Q ss_pred HcC--CCcceeecCCCC--HHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCCC------------CHHHH
Q 014134 279 SAG--GISCAAYHAGLN--DKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------SMEAF 342 (430)
Q Consensus 279 ~~~--~~~~~~~hg~~~--~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~------------s~~~~ 342 (430)
++. +.++..+|++++ .++++.+++.|++|+.+|||+|+++++|+|+|++++|+.++.+. ..+.|
T Consensus 447 ~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l 526 (679)
T PRK05580 447 AELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLL 526 (679)
T ss_pred HHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHH
Confidence 875 678899999986 46789999999999999999999999999999999997665542 23679
Q ss_pred HHHhccCCCCCCCceEEEeeCccc
Q 014134 343 YQESGRAGRDQLPSKSLLYYGMDD 366 (430)
Q Consensus 343 ~q~~GR~~R~g~~g~~i~~~~~~~ 366 (430)
.|++||+||.+..|.+++.....+
T Consensus 527 ~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 527 TQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred HHHHhhccCCCCCCEEEEEeCCCC
Confidence 999999999999999998765443
No 83
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=5.9e-33 Score=272.02 Aligned_cols=312 Identities=16% Similarity=0.154 Sum_probs=212.1
Q ss_pred cchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc---CCCeEEEEcchHHHHHHHHHHHHH----cCcceeEeCC
Q 014134 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE----KGIAGEFLSS 110 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~---~~~~~lil~Pt~~L~~q~~~~~~~----~~~~~~~~~~ 110 (430)
.++|+|.+++..+..++..++.++||+|||++|.+|++. .+..++|++|+++||.|+.+++.. +|..+.....
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~ 147 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVV 147 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEEC
Confidence 356666666666666666899999999999999999763 366799999999999999998855 5666655443
Q ss_pred Cch-HHHHHHHHhhhhcCCCceeEEEECCccccChhHH-HHHH-H-------hhhcCCccEEEEecCcccccc-------
Q 014134 111 TQT-MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM-SKLK-K-------IHSRGLLNLVAIDEAHCISSW------- 173 (430)
Q Consensus 111 ~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~-~~~~-~-------~~~~~~~~~lViDE~h~~~~~------- 173 (430)
... ........... ..++++++||+.+ .+++ . ......+.++|+||||.++-.
T Consensus 148 ~s~~~~~~~~~rr~~----------y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpli 217 (762)
T TIGR03714 148 DDPDEEYDANEKRKI----------YNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLV 217 (762)
T ss_pred CCCccccCHHHHHHh----------CCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCee
Confidence 211 00000000000 1123388888866 2322 1 122456889999999998420
Q ss_pred --CCC--cHHHHHH--------------------------------HHHH---------------------Hhh---C--
Q 014134 174 --GHD--FRPSYRK--------------------------------LSSL---------------------RNY---L-- 191 (430)
Q Consensus 174 --~~~--~~~~~~~--------------------------------l~~~---------------------~~~---~-- 191 (430)
|.. ....+.. +..+ +.. +
T Consensus 218 isg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~ 297 (762)
T TIGR03714 218 ISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKR 297 (762)
T ss_pred eeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhc
Confidence 000 0000000 0000 000 0
Q ss_pred -----------------------------------------------------------C-CCcEEEEEcCCCchhHHHH
Q 014134 192 -----------------------------------------------------------P-DVPILALTATAAPKVQKDV 211 (430)
Q Consensus 192 -----------------------------------------------------------~-~~~~i~~SAT~~~~~~~~~ 211 (430)
. -.++.+||+|... ...++
T Consensus 298 d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~-~~~Ef 376 (762)
T TIGR03714 298 NKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKV-AEKEF 376 (762)
T ss_pred CCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChh-HHHHH
Confidence 0 1157788888543 23344
Q ss_pred HHHhCCCCCeEEeccCCCCceEEEE--EecCcchhHHHHHHHHHHh--cCCceEEEEeCccccHHHHHHHHHcCCCccee
Q 014134 212 MESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAA 287 (430)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~ 287 (430)
...++ -.++....+.+.+.... ........|+..+.+.+++ ..+.++||||+|++.++.++..|.+.|+++..
T Consensus 377 ~~iY~---l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~ 453 (762)
T TIGR03714 377 IETYS---LSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNL 453 (762)
T ss_pred HHHhC---CCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEE
Confidence 43322 22333333444333321 1222345678888887765 46789999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHhhcCCceEEEEecccccccccc---------CceEEEEecCCCCHHHHHHHhccCCCCCCCceE
Q 014134 288 YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKS 358 (430)
Q Consensus 288 ~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~---------~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~ 358 (430)
+||++.+.++..+..+++.| .|+|||++++||+|+| ++++|+++++|....+ .||+||+||.|.+|.+
T Consensus 454 L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s 530 (762)
T TIGR03714 454 LNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSS 530 (762)
T ss_pred ecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeE
Confidence 99999999888887777666 7999999999999999 9999999999988777 9999999999999999
Q ss_pred EEeeCccc
Q 014134 359 LLYYGMDD 366 (430)
Q Consensus 359 i~~~~~~~ 366 (430)
++|++.+|
T Consensus 531 ~~~is~eD 538 (762)
T TIGR03714 531 QFFVSLED 538 (762)
T ss_pred EEEEccch
Confidence 99998765
No 84
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.2e-32 Score=266.31 Aligned_cols=313 Identities=20% Similarity=0.183 Sum_probs=219.9
Q ss_pred HHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh---cCCCeEEEEcchHHHHHHHHHHHHHc----Cc
Q 014134 31 RWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKEK----GI 103 (430)
Q Consensus 31 ~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt~~L~~q~~~~~~~~----~~ 103 (430)
.+.+|+ .|++.|..+...+..|+ ++.++||+|||+++.+|++ ..+..+.|++||+.||.|.++++..+ |+
T Consensus 50 ~R~lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGL 126 (745)
T TIGR00963 50 KRVLGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGL 126 (745)
T ss_pred HHHhCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCC
Confidence 355575 47888888888776665 9999999999999999984 23668999999999999999988773 56
Q ss_pred ceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHH-HHHHHh--------hhcCCccEEEEecCccccc--
Q 014134 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM-SKLKKI--------HSRGLLNLVAIDEAHCISS-- 172 (430)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~-~~~~~~--------~~~~~~~~lViDE~h~~~~-- 172 (430)
.+....+..........+ . ++ ++++||+++ .+++.. .....+.++|+||+|+++-
T Consensus 127 sv~~i~g~~~~~~r~~~y------~--~d------IvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDe 192 (745)
T TIGR00963 127 SVGLILSGMSPEERREAY------A--CD------ITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDE 192 (745)
T ss_pred eEEEEeCCCCHHHHHHhc------C--CC------EEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHh
Confidence 666665554433322221 1 22 388999866 444322 2456689999999999842
Q ss_pred -------cCC--CcHHHH--------------------------------HHHHHHH---------------------hh
Q 014134 173 -------WGH--DFRPSY--------------------------------RKLSSLR---------------------NY 190 (430)
Q Consensus 173 -------~~~--~~~~~~--------------------------------~~l~~~~---------------------~~ 190 (430)
.|. .....+ ..+..+. ..
T Consensus 193 aRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A 272 (745)
T TIGR00963 193 ARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKA 272 (745)
T ss_pred hhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHH
Confidence 010 000000 0011000 00
Q ss_pred ---C----------------------------------------------C----------------CCcEEEEEcCCCc
Q 014134 191 ---L----------------------------------------------P----------------DVPILALTATAAP 205 (430)
Q Consensus 191 ---~----------------------------------------------~----------------~~~~i~~SAT~~~ 205 (430)
+ + -.++.+||+|...
T Consensus 273 ~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~t 352 (745)
T TIGR00963 273 KELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKT 352 (745)
T ss_pred HHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHH
Confidence 0 0 0146677777654
Q ss_pred hhHHHHHHHhCCCCCeEEeccCCCCceEEE--EEecCcchhHHHHHHHHHHh--cCCceEEEEeCccccHHHHHHHHHcC
Q 014134 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYE--VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG 281 (430)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~ 281 (430)
.. .++...++. + ++....+.+..... .........++..+.+.+.. ..+.++||||+|++.++.+++.|.+.
T Consensus 353 e~-~E~~~iY~l-~--vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~ 428 (745)
T TIGR00963 353 EE-EEFEKIYNL-E--VVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKER 428 (745)
T ss_pred HH-HHHHHHhCC-C--EEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHc
Confidence 32 333333322 2 22233333332222 11122235677777776633 36889999999999999999999999
Q ss_pred CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccC-------ceEEEEecCCCCHHHHHHHhccCCCCCC
Q 014134 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD-------VRLVCHFNIPKSMEAFYQESGRAGRDQL 354 (430)
Q Consensus 282 ~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~-------~~~vi~~~~p~s~~~~~q~~GR~~R~g~ 354 (430)
|++...+|++ +.+|+..+..|+.+...|+|||++++||+|++. ..+||+++.|.|...+.|++||+||.|.
T Consensus 429 gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~ 506 (745)
T TIGR00963 429 GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGD 506 (745)
T ss_pred CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCC
Confidence 9999999998 789999999999999999999999999999998 5599999999999999999999999999
Q ss_pred CceEEEeeCccc
Q 014134 355 PSKSLLYYGMDD 366 (430)
Q Consensus 355 ~g~~i~~~~~~~ 366 (430)
+|.+.+|++.+|
T Consensus 507 ~G~s~~~ls~eD 518 (745)
T TIGR00963 507 PGSSRFFLSLED 518 (745)
T ss_pred CcceEEEEeccH
Confidence 999999998875
No 85
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.6e-33 Score=268.67 Aligned_cols=321 Identities=20% Similarity=0.235 Sum_probs=226.6
Q ss_pred HHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh---cCCCeEEEEcchHHHHHHHHHHHHHc
Q 014134 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKEK 101 (430)
Q Consensus 25 ~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt~~L~~q~~~~~~~~ 101 (430)
.++......|+|+ |.++|++|+.++.+|.+++|.|+|.+|||+++.+++. .+..+++|.+|.++|.+|.++.|++.
T Consensus 285 ~lVpe~a~~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~t 363 (1248)
T KOG0947|consen 285 QLVPEMALIYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKET 363 (1248)
T ss_pred HhchhHHhhCCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHh
Confidence 3444444557886 8999999999999999999999999999999876664 45789999999999999999999884
Q ss_pred CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhh--cCCccEEEEecCccccccCCCcHH
Q 014134 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS--RGLLNLVAIDEAHCISSWGHDFRP 179 (430)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~--~~~~~~lViDE~h~~~~~~~~~~~ 179 (430)
.-.+.+++++... ....++ +|.|.+.+..|+.... ...+++|||||+|.+.|....
T Consensus 364 F~DvgLlTGDvqi-----------nPeAsC--------LIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRG--- 421 (1248)
T KOG0947|consen 364 FGDVGLLTGDVQI-----------NPEASC--------LIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERG--- 421 (1248)
T ss_pred ccccceeecceee-----------CCCcce--------EeehHHHHHHHHhcccchhhccceEEEeeeeeccccccc---
Confidence 3333343332211 111223 8888888888865433 555899999999999774322
Q ss_pred HHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCC---CCCeEEeccCCCCceEEEEEec-Ccc------------
Q 014134 180 SYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCL---QNPLVLKSSFNRPNLFYEVRYK-DLL------------ 242 (430)
Q Consensus 180 ~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~------------ 242 (430)
..+.+++-++| .+++|++|||+++... +..|++- ++..++.+...+..+.+..... ...
T Consensus 422 --vVWEEViIMlP~HV~~IlLSATVPN~~E--FA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~ 497 (1248)
T KOG0947|consen 422 --VVWEEVIIMLPRHVNFILLSATVPNTLE--FADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLK 497 (1248)
T ss_pred --ccceeeeeeccccceEEEEeccCCChHH--HHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhh
Confidence 44566666667 7899999999999743 3555543 2222222211111110000000 000
Q ss_pred ------------------------------------------------------hhHHHHHHHHHHhcCCceEEEEeCcc
Q 014134 243 ------------------------------------------------------DDAYADLCSVLKANGDTCAIVYCLER 268 (430)
Q Consensus 243 ------------------------------------------------------~~~~~~l~~~l~~~~~~~~iVf~~s~ 268 (430)
...+-.+...+....--++||||-|+
T Consensus 498 ~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSk 577 (1248)
T KOG0947|consen 498 GIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSK 577 (1248)
T ss_pred cchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEcc
Confidence 01244555555555566899999999
Q ss_pred ccHHHHHHHHHcCCC---------------------------------------cceeecCCCCHHHHHHHHHHhhcCCc
Q 014134 269 TTCDELSAYLSAGGI---------------------------------------SCAAYHAGLNDKARSSVLDDWISSRK 309 (430)
Q Consensus 269 ~~~~~l~~~l~~~~~---------------------------------------~~~~~hg~~~~~~r~~~~~~f~~g~~ 309 (430)
+.|++.++.|...+. +++.|||++-+--++-++..|..|-+
T Consensus 578 krCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlV 657 (1248)
T KOG0947|consen 578 KRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLV 657 (1248)
T ss_pred ccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCce
Confidence 999999999975432 57899999999999999999999999
Q ss_pred eEEEEeccccccccccCceEEEEecCC---------CCHHHHHHHhccCCCCCC--CceEEEeeCcc--chHHHHHH
Q 014134 310 QVVVATVAFGMGIDRKDVRLVCHFNIP---------KSMEAFYQESGRAGRDQL--PSKSLLYYGMD--DRRRMEFI 373 (430)
Q Consensus 310 ~vLv~T~~~~~Gidi~~~~~vi~~~~p---------~s~~~~~q~~GR~~R~g~--~g~~i~~~~~~--~~~~~~~~ 373 (430)
+||+||.++++|||+|.-++|+ -++- ..+.+|.||.|||||.|- .|.++++.... +...+..+
T Consensus 658 KVLFATETFAMGVNMPARtvVF-~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~l 733 (1248)
T KOG0947|consen 658 KVLFATETFAMGVNMPARTVVF-SSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRL 733 (1248)
T ss_pred EEEeehhhhhhhcCCCceeEEe-eehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhH
Confidence 9999999999999999666555 3322 368899999999999996 46666665443 33444444
No 86
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.2e-31 Score=255.31 Aligned_cols=289 Identities=20% Similarity=0.231 Sum_probs=198.9
Q ss_pred EEEcCCCChHHHHhHHhh---hcCCCeEEEEcchHHHHHHHHHHHHH-cCcceeEeCCCchHHHHHHHHhhhhcCCCcee
Q 014134 57 FCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLR 132 (430)
Q Consensus 57 lv~a~tGsGKT~~~~~~~---l~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (430)
++.||||+|||.+|+..+ +.++.++||++|+++|+.|+++.+++ ++....++.+......+...+..+......+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~I- 79 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILV- 79 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCE-
Confidence 478999999999986544 56788999999999999999999987 5667777777776666666666655444333
Q ss_pred EEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCc-HHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHH
Q 014134 133 LLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDF-RPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (430)
Q Consensus 133 i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~-~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~ 211 (430)
+|+|+..+. ....++++||+||+|....++... ......+........+.+++++||||+.+.....
T Consensus 80 -------VVGTrsalf-----~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~ 147 (505)
T TIGR00595 80 -------VIGTRSALF-----LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNA 147 (505)
T ss_pred -------EECChHHHc-----CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHH
Confidence 788876442 346678999999999976433211 1111334455666678999999999887654433
Q ss_pred HHHhCCCCCeEEeccC---CCCceEEEEEecC-----cchhHHHHHHHHHHhcCCceEEEEeCcccc-------------
Q 014134 212 MESLCLQNPLVLKSSF---NRPNLFYEVRYKD-----LLDDAYADLCSVLKANGDTCAIVYCLERTT------------- 270 (430)
Q Consensus 212 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~------------- 270 (430)
.. +........... ..+.+........ .....++.+.+.++ .++++|||+|++-.
T Consensus 148 ~~--g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~--~g~qvLvflnrrGya~~~~C~~Cg~~~ 223 (505)
T TIGR00595 148 KQ--KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLA--AGEQSILFLNRRGYSKNLLCRSCGYIL 223 (505)
T ss_pred hc--CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHH--cCCcEEEEEeCCcCCCeeEhhhCcCcc
Confidence 21 110111111101 1111211111111 11223333444443 36689999775421
Q ss_pred -----------------------------------------------HHHHHHHHHcC--CCcceeecCCCCHHHH--HH
Q 014134 271 -----------------------------------------------CDELSAYLSAG--GISCAAYHAGLNDKAR--SS 299 (430)
Q Consensus 271 -----------------------------------------------~~~l~~~l~~~--~~~~~~~hg~~~~~~r--~~ 299 (430)
.+++++.|++. +.++..+|++++...+ +.
T Consensus 224 ~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~ 303 (505)
T TIGR00595 224 CCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEA 303 (505)
T ss_pred CCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHH
Confidence 47888888876 6788999999987666 89
Q ss_pred HHHHhhcCCceEEEEeccccccccccCceEEEEecCCC------------CHHHHHHHhccCCCCCCCceEEEee
Q 014134 300 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------SMEAFYQESGRAGRDQLPSKSLLYY 362 (430)
Q Consensus 300 ~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~------------s~~~~~q~~GR~~R~g~~g~~i~~~ 362 (430)
+++.|++|+.+|||+|+++++|+|+|++++|+..+... ..+.|.|++||+||.+..|.+++..
T Consensus 304 ~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt 378 (505)
T TIGR00595 304 LLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQT 378 (505)
T ss_pred HHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEe
Confidence 99999999999999999999999999999987555432 2467999999999999999998655
No 87
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=5.3e-31 Score=270.68 Aligned_cols=297 Identities=18% Similarity=0.211 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhh--hc--CC--CeEEEEcc----hHHHHHHHHHHHHH-cCcceeEeC
Q 014134 41 DKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA--LA--KP--GIVLVVSP----LIALMENQVIGLKE-KGIAGEFLS 109 (430)
Q Consensus 41 ~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~--l~--~~--~~~lil~P----t~~L~~q~~~~~~~-~~~~~~~~~ 109 (430)
.+-.+.++.+.+++.++++|+||||||.. +|. +. .+ ..+++.-| +++||.|+.+++.. +|..+....
T Consensus 77 ~~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~v 154 (1294)
T PRK11131 77 QKKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKV 154 (1294)
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceee
Confidence 33445666666777889999999999984 442 22 22 23444557 46888888888765 443322211
Q ss_pred CCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHH-hhhcCCccEEEEecCc-cccccCCCcHHHHHHHHHH
Q 014134 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDEAH-CISSWGHDFRPSYRKLSSL 187 (430)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~-~~~~~~~~~lViDE~h-~~~~~~~~~~~~~~~l~~~ 187 (430)
.. +..... .+.++++||+++.+... ...+..+++||+|||| +.++.+ |. +..+..+
T Consensus 155 rf----------~~~~s~--------~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~D--fL--Lg~Lk~l 212 (1294)
T PRK11131 155 RF----------NDQVSD--------NTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNID--FI--LGYLKEL 212 (1294)
T ss_pred cC----------ccccCC--------CCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccc--hH--HHHHHHh
Confidence 00 000011 23338999998877654 3347779999999999 566654 32 2334555
Q ss_pred HhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeE-EeccCCCCceEEEEEecCc---chhHHHHHHHHHH---hcCCce
Q 014134 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKDL---LDDAYADLCSVLK---ANGDTC 260 (430)
Q Consensus 188 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~l~---~~~~~~ 260 (430)
....|+.|+|+||||++.. .+..++. ..+++ +........+.+....... ....+..+...+. ..+.+.
T Consensus 213 L~~rpdlKvILmSATid~e---~fs~~F~-~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~Gd 288 (1294)
T PRK11131 213 LPRRPDLKVIITSATIDPE---RFSRHFN-NAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGD 288 (1294)
T ss_pred hhcCCCceEEEeeCCCCHH---HHHHHcC-CCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCC
Confidence 5555788999999999754 3344443 23332 2222222222222111111 1223333333322 235678
Q ss_pred EEEEeCccccHHHHHHHHHcCCCc---ceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecC--
Q 014134 261 AIVYCLERTTCDELSAYLSAGGIS---CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-- 335 (430)
Q Consensus 261 ~iVf~~s~~~~~~l~~~l~~~~~~---~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~-- 335 (430)
+|||+++..+++.+++.|++.+.+ +..+||++++++|..+++. .|..+|+|||+++++|+|+|++++||+++.
T Consensus 289 ILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k 366 (1294)
T PRK11131 289 ILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTAR 366 (1294)
T ss_pred EEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcc
Confidence 999999999999999999987654 6789999999999999886 578899999999999999999999999863
Q ss_pred -------------C---CCHHHHHHHhccCCCCCCCceEEEeeCccchH
Q 014134 336 -------------P---KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (430)
Q Consensus 336 -------------p---~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~ 368 (430)
| .|.++|.||.||+||. ..|.|+.++++++..
T Consensus 367 ~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 367 ISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred ccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 3 4668999999999999 799999999987654
No 88
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=4.5e-31 Score=248.51 Aligned_cols=317 Identities=19% Similarity=0.217 Sum_probs=221.2
Q ss_pred cCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh---cCCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCC
Q 014134 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (430)
Q Consensus 34 ~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 110 (430)
|.| ++.|+|..|+..+-++.+++|.|.|.+|||.++.+++. ..+.+|||.+|.++|.+|.++++..-..++.+.++
T Consensus 126 YPF-~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTG 204 (1041)
T KOG0948|consen 126 YPF-TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTG 204 (1041)
T ss_pred CCc-ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeec
Confidence 455 48999999999999999999999999999999877764 45889999999999999999998774445544444
Q ss_pred CchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhh--cCCccEEEEecCccccccCCCcHHHHHHHHHHH
Q 014134 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS--RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (430)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~--~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~ 188 (430)
+.+.+ ....+ +|.|.+.+..|+...+ ...+.+|||||+|.+-|.... -.+.+-+
T Consensus 205 DVTIn-----------P~ASC--------LVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERG-----VVWEETI 260 (1041)
T KOG0948|consen 205 DVTIN-----------PDASC--------LVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERG-----VVWEETI 260 (1041)
T ss_pred ceeeC-----------CCCce--------eeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccc-----eeeeeeE
Confidence 33221 12223 8888888888876544 455889999999999763211 2223333
Q ss_pred hhCC-CCcEEEEEcCCCchhHHHHHHHhC---CCCCeEEeccCCCC------------ceEEEEEecC-cchh-------
Q 014134 189 NYLP-DVPILALTATAAPKVQKDVMESLC---LQNPLVLKSSFNRP------------NLFYEVRYKD-LLDD------- 244 (430)
Q Consensus 189 ~~~~-~~~~i~~SAT~~~~~~~~~~~~~~---~~~~~~~~~~~~~~------------~~~~~~~~~~-~~~~------- 244 (430)
-.+| +.+.+++|||+|+.... ..|++ .....++-+++.+. .++..+..+. ...+
T Consensus 261 IllP~~vr~VFLSATiPNA~qF--AeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~ 338 (1041)
T KOG0948|consen 261 ILLPDNVRFVFLSATIPNARQF--AEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMS 338 (1041)
T ss_pred EeccccceEEEEeccCCCHHHH--HHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHH
Confidence 3334 78999999999997432 44442 22222222222221 1222221111 0111
Q ss_pred -------------------------------HHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCC----------
Q 014134 245 -------------------------------AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI---------- 283 (430)
Q Consensus 245 -------------------------------~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~---------- 283 (430)
.+-.+...+-.....++|||+-|++.|+.++-.+.+..+
T Consensus 339 ~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~ 418 (1041)
T KOG0948|consen 339 VLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVE 418 (1041)
T ss_pred HhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHH
Confidence 111233333334566899999999999999877765422
Q ss_pred -----------------------------cceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEec
Q 014134 284 -----------------------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (430)
Q Consensus 284 -----------------------------~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~ 334 (430)
++++||||+-+--++.++-.|.+|-+++|+||.+.+.|+|+|.-++|+..-
T Consensus 419 ~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~ 498 (1041)
T KOG0948|consen 419 TIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAV 498 (1041)
T ss_pred HHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeec
Confidence 678999999999999999999999999999999999999999777776321
Q ss_pred CC--------CCHHHHHHHhccCCCCCC--CceEEEeeCcc-chHHHHHHHHhc
Q 014134 335 IP--------KSMEAFYQESGRAGRDQL--PSKSLLYYGMD-DRRRMEFILSKN 377 (430)
Q Consensus 335 ~p--------~s~~~~~q~~GR~~R~g~--~g~~i~~~~~~-~~~~~~~~~~~~ 377 (430)
-- -|..+|+||.||+||.|. .|.||+++++. +....+.+++..
T Consensus 499 rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~ 552 (1041)
T KOG0948|consen 499 RKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGS 552 (1041)
T ss_pred cccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCC
Confidence 11 266789999999999996 57788887765 445555555443
No 89
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=8.5e-29 Score=249.59 Aligned_cols=312 Identities=13% Similarity=0.104 Sum_probs=193.9
Q ss_pred cCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh---cC--CCeEEEEcchHHHHHHHHHHHHH-----cC-
Q 014134 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AK--PGIVLVVSPLIALMENQVIGLKE-----KG- 102 (430)
Q Consensus 34 ~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l---~~--~~~~lil~Pt~~L~~q~~~~~~~-----~~- 102 (430)
|+..+|+|+|+.+......+..+++.||||+|||.+++.++. .+ ..+++|..||+++++|+++++.. ++
T Consensus 282 ~~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~ 361 (878)
T PRK09694 282 DNGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPS 361 (878)
T ss_pred cCCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCC
Confidence 444579999998854434456789999999999999876653 22 36899999999999999998865 21
Q ss_pred cceeEeCCCchHHHH-HHHHh-hh-------------hcCCCceeEEEECCccccChhHHHH-HHHh--hhcCC----cc
Q 014134 103 IAGEFLSSTQTMQVK-TKIYE-DL-------------DSGKPSLRLLYVTPELTATPGFMSK-LKKI--HSRGL----LN 160 (430)
Q Consensus 103 ~~~~~~~~~~~~~~~-~~~~~-~~-------------~~~~~~~~i~~~~~~~v~T~~~~~~-~~~~--~~~~~----~~ 160 (430)
....+..+....... ..... +. .......+-....+++|+|...+.. .+.. ..... -+
T Consensus 362 ~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~s 441 (878)
T PRK09694 362 PNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRS 441 (878)
T ss_pred CceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccC
Confidence 122222222211100 00000 00 0000001122335668999874442 2211 11111 24
Q ss_pred EEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCC--------CCeEEe--------
Q 014134 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ--------NPLVLK-------- 224 (430)
Q Consensus 161 ~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~--------~~~~~~-------- 224 (430)
+|||||+|.+-.. ....+..+.+.... ...++|+||||++....+.+...+... .|.+..
T Consensus 442 vvIiDEVHAyD~y---m~~lL~~~L~~l~~-~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~ 517 (878)
T PRK09694 442 VLIVDEVHAYDAY---MYGLLEAVLKAQAQ-AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQR 517 (878)
T ss_pred eEEEechhhCCHH---HHHHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccccccee
Confidence 8999999997332 22233333222222 267799999999998777666544321 111100
Q ss_pred --ccCC----CCceEEEEEec--Cc---chhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCC---CcceeecC
Q 014134 225 --SSFN----RPNLFYEVRYK--DL---LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG---ISCAAYHA 290 (430)
Q Consensus 225 --~~~~----~~~~~~~~~~~--~~---~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~---~~~~~~hg 290 (430)
.... .......+... .. ....++.+.+.+ ..+++++|||||++.|+++++.|++.+ .++..+||
T Consensus 518 ~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHs 595 (878)
T PRK09694 518 FDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHA 595 (878)
T ss_pred eeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeC
Confidence 0000 00111111111 10 112222233222 256789999999999999999999764 57899999
Q ss_pred CCCHHHH----HHHHHHh-hcCC---ceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCC
Q 014134 291 GLNDKAR----SSVLDDW-ISSR---KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354 (430)
Q Consensus 291 ~~~~~~r----~~~~~~f-~~g~---~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~ 354 (430)
+++..+| .++++.| ++|+ ..|||+|+++++|+|++ ++++|....| .+.++||+||++|.+.
T Consensus 596 rf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 596 RFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999999 4567788 5665 47999999999999995 8999998888 8899999999999875
No 90
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=8.9e-30 Score=254.32 Aligned_cols=310 Identities=22% Similarity=0.210 Sum_probs=214.2
Q ss_pred HHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhh---hcCCCeEEEEcchHHHHHHHHHHHHHcCcceeE
Q 014134 31 RWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (430)
Q Consensus 31 ~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 107 (430)
.+.+||+ |.++|++|+..+.++.+++++||||+|||+++.+++ +.++.+++|.+|.++|.+|.++++.....+.
T Consensus 113 ~~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv-- 189 (1041)
T COG4581 113 AREYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDV-- 189 (1041)
T ss_pred HHhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhh--
Confidence 3347886 999999999999999999999999999999987766 3568889999999999999999987732221
Q ss_pred eCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh--hcCCccEEEEecCccccccCCCcHHHHHHHH
Q 014134 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (430)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~--~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~ 185 (430)
...+ .....+.++=-..+.+|.|.+.+..|+... ....+..||+||+|.+.+.... ..+.
T Consensus 190 ----------~~~v---GL~TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG-----~VWE 251 (1041)
T COG4581 190 ----------ADMV---GLMTGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERG-----VVWE 251 (1041)
T ss_pred ----------hhhc---cceecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccc-----hhHH
Confidence 0000 001111111112223777778888886544 3556889999999999875433 4456
Q ss_pred HHHhhCC-CCcEEEEEcCCCchhHHHHHHHhC--CCCCe-EEeccCCCCceEEEEEec----------Cc----------
Q 014134 186 SLRNYLP-DVPILALTATAAPKVQKDVMESLC--LQNPL-VLKSSFNRPNLFYEVRYK----------DL---------- 241 (430)
Q Consensus 186 ~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~----------~~---------- 241 (430)
+.+-..| +.++|+||||+++.... ..|+. ...+. ++..+..+..+.+.+... ..
T Consensus 252 E~Ii~lP~~v~~v~LSATv~N~~EF--~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~ 329 (1041)
T COG4581 252 EVIILLPDHVRFVFLSATVPNAEEF--AEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSAN 329 (1041)
T ss_pred HHHHhcCCCCcEEEEeCCCCCHHHH--HHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhh
Confidence 6666667 56999999999997443 44443 23333 333332222222211111 00
Q ss_pred ---------------------------------chhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcC-------
Q 014134 242 ---------------------------------LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------- 281 (430)
Q Consensus 242 ---------------------------------~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~------- 281 (430)
.......+...+...+.-++|+|+-++..|+..+..+...
T Consensus 330 ~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~ 409 (1041)
T COG4581 330 RSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEE 409 (1041)
T ss_pred hhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCc
Confidence 0000112333444445668999999999998888766421
Q ss_pred ---------------------CC-------------cceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCc
Q 014134 282 ---------------------GI-------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327 (430)
Q Consensus 282 ---------------------~~-------------~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~ 327 (430)
++ ++++||++|-+..|..+...|..|.++|+++|.+++.|+|+|.-
T Consensus 410 ~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPar 489 (1041)
T COG4581 410 KERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPAR 489 (1041)
T ss_pred HHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCccc
Confidence 11 35689999999999999999999999999999999999999965
Q ss_pred eEEEEecC---------CCCHHHHHHHhccCCCCCC--CceEEEeeCc
Q 014134 328 RLVCHFNI---------PKSMEAFYQESGRAGRDQL--PSKSLLYYGM 364 (430)
Q Consensus 328 ~~vi~~~~---------p~s~~~~~q~~GR~~R~g~--~g~~i~~~~~ 364 (430)
++|+ ..+ +-++.+|.|+.||+||.|. .|.++++..+
T Consensus 490 tvv~-~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 490 TVVF-TSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred ceee-eeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 5555 322 3479999999999999996 4777776433
No 91
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=4.1e-29 Score=257.81 Aligned_cols=301 Identities=18% Similarity=0.158 Sum_probs=196.4
Q ss_pred HHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC----CCeEEEEcchHHHHHHHHHHHHH-cCcceeEeCCCchHHHHH
Q 014134 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKT 118 (430)
Q Consensus 44 ~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~----~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~ 118 (430)
.+.+..+.+++.++++|+||||||...-..++.. ...+++.-|.|--|..++..+.+ +|.......+....
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR---- 148 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVR---- 148 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEc----
Confidence 3466666677888999999999998542223322 23566677888766666655444 44332221111100
Q ss_pred HHHhhhhcCCCceeEEEECCccccChhHHHHHHH-hhhcCCccEEEEecCc-cccccCCCcHHHHHHHHHHHhhCCCCcE
Q 014134 119 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDEAH-CISSWGHDFRPSYRKLSSLRNYLPDVPI 196 (430)
Q Consensus 119 ~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~-~~~~~~~~~lViDE~h-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 196 (430)
.+...+. .+.+.++|++.+..... ...+..+++||+||+| +.++.+ ..+..+..+....|+.++
T Consensus 149 --~~~~~s~--------~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D----~LL~lLk~il~~rpdLKl 214 (1283)
T TIGR01967 149 --FHDQVSS--------NTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNID----FLLGYLKQLLPRRPDLKI 214 (1283)
T ss_pred --CCcccCC--------CceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccch----hHHHHHHHHHhhCCCCeE
Confidence 0000011 22338999998776643 3446779999999999 466633 222335556666678899
Q ss_pred EEEEcCCCchhHHHHHHHhCCCCCeEE-eccCCCCceEEEEEecCc---chhHHHHHHHHHH---hcCCceEEEEeCccc
Q 014134 197 LALTATAAPKVQKDVMESLCLQNPLVL-KSSFNRPNLFYEVRYKDL---LDDAYADLCSVLK---ANGDTCAIVYCLERT 269 (430)
Q Consensus 197 i~~SAT~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~l~---~~~~~~~iVf~~s~~ 269 (430)
|+||||++.. .+..++.. .+++. ........+.+....... .......+...+. ....+.+|||+++..
T Consensus 215 IlmSATld~~---~fa~~F~~-apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~ 290 (1283)
T TIGR01967 215 IITSATIDPE---RFSRHFNN-APIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGER 290 (1283)
T ss_pred EEEeCCcCHH---HHHHHhcC-CCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHH
Confidence 9999999754 33444432 33322 222222222222111111 1123333333332 224578999999999
Q ss_pred cHHHHHHHHHcCC---CcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCC----------
Q 014134 270 TCDELSAYLSAGG---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP---------- 336 (430)
Q Consensus 270 ~~~~l~~~l~~~~---~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p---------- 336 (430)
+++.+++.|.+.+ ..+..+||++++++|..+++.+ +..+|+|||+++++|+|+|++++||+++.+
T Consensus 291 EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~ 368 (1283)
T TIGR01967 291 EIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTK 368 (1283)
T ss_pred HHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccC
Confidence 9999999998764 3478899999999999986653 346899999999999999999999998853
Q ss_pred --------CCHHHHHHHhccCCCCCCCceEEEeeCccchHH
Q 014134 337 --------KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (430)
Q Consensus 337 --------~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~ 369 (430)
.|.++|.||.||+||.| .|.|+.+++..+...
T Consensus 369 ~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 369 VQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred ccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 37789999999999997 999999998876543
No 92
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=4.2e-28 Score=246.84 Aligned_cols=310 Identities=17% Similarity=0.143 Sum_probs=213.0
Q ss_pred cchHHHHHHHHHHH----cCCCEEEEcCCCChHHHHhHHhh--hc----CCCeEEEEcchHHHHHHHHHHHHHcCcceeE
Q 014134 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPA--LA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~----~~~~~lv~a~tGsGKT~~~~~~~--l~----~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 107 (430)
+|++||.+++.++. .+.+.|++..+|.|||+..+..+ +. ....+|||||.. +..||.+++.++.....+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~S-lL~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKS-TLGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChH-HHHHHHHHHHHHCCCCce
Confidence 69999999999986 46789999999999998654322 22 135789999985 567899999887543333
Q ss_pred eCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHH
Q 014134 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (430)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~ 187 (430)
.........+......... ....++ +|+|++.+...........+++||+||||++.+.. ..+...
T Consensus 248 ~~~~G~~~eR~~~~~~~~~-~~~~dV------vITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~-------Sklska 313 (1033)
T PLN03142 248 VKFHGNPEERAHQREELLV-AGKFDV------CVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNEN-------SLLSKT 313 (1033)
T ss_pred EEEeCCHHHHHHHHHHHhc-ccCCCc------ceecHHHHHHHHHHhccCCCCEEEEcCccccCCHH-------HHHHHH
Confidence 3222222222222211111 112233 67777766555555555568999999999997643 333344
Q ss_pred HhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEecc---------------------------------------CC
Q 014134 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---------------------------------------FN 228 (430)
Q Consensus 188 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~ 228 (430)
...+.....+++||||..+...+++..+....|..+... ..
T Consensus 314 lr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~ 393 (1033)
T PLN03142 314 MRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKG 393 (1033)
T ss_pred HHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhh
Confidence 444455668999999998877777776655444322110 00
Q ss_pred CCceEEEEEecCc--------------------------------------------------------------chhHH
Q 014134 229 RPNLFYEVRYKDL--------------------------------------------------------------LDDAY 246 (430)
Q Consensus 229 ~~~~~~~~~~~~~--------------------------------------------------------------~~~~~ 246 (430)
.+........... ...|+
T Consensus 394 LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl 473 (1033)
T PLN03142 394 LPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKM 473 (1033)
T ss_pred CCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHH
Confidence 0000000000000 01222
Q ss_pred HHHHHHHHh--cCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCC---ceEEEEecccccc
Q 014134 247 ADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR---KQVVVATVAFGMG 321 (430)
Q Consensus 247 ~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~---~~vLv~T~~~~~G 321 (430)
..+..++.. ..+.++|||+......+.+.+.|...++++..++|+++..+|..+++.|++.. ..+|++|.+.+.|
T Consensus 474 ~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlG 553 (1033)
T PLN03142 474 VLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLG 553 (1033)
T ss_pred HHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccC
Confidence 333333332 24679999999999999999999999999999999999999999999998532 3578999999999
Q ss_pred ccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEee
Q 014134 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362 (430)
Q Consensus 322 idi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~ 362 (430)
+|+..+++||+||+|||+....|++||+.|.|+...+.++.
T Consensus 554 INLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 554 INLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred CchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 99999999999999999999999999999999987766653
No 93
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.96 E-value=1.2e-27 Score=248.04 Aligned_cols=311 Identities=20% Similarity=0.243 Sum_probs=192.3
Q ss_pred cchHHHHHHHHHHH----cC-CCEEEEcCCCChHHHHhHHhh---hc--CCCeEEEEcchHHHHHHHHHHHHHcCcceeE
Q 014134 38 QFRDKQLDAIQAVL----SG-RDCFCLMPTGGGKSMCYQIPA---LA--KPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~----~~-~~~lv~a~tGsGKT~~~~~~~---l~--~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 107 (430)
.++++|.+|+..+. ++ ++.++++|||||||.+++..+ +. ...++|+|+|+++|+.|+.+.|..++.....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~ 492 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGDQ 492 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccccc
Confidence 58999999998875 23 679999999999997754322 22 3468999999999999999999987543221
Q ss_pred eCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHH-------hhhcCCccEEEEecCcccccc------C
Q 014134 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-------IHSRGLLNLVAIDEAHCISSW------G 174 (430)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~-------~~~~~~~~~lViDE~h~~~~~------~ 174 (430)
..... ... ........... .++ +|+|...+..... ....+.+++||+||||+.... +
T Consensus 493 ~~~~i-~~i-~~L~~~~~~~~--~~I------~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 493 TFASI-YDI-KGLEDKFPEDE--TKV------HVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred chhhh-hch-hhhhhhcccCC--CCE------EEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 00000 000 00111111111 222 7888775544321 123456889999999996320 0
Q ss_pred ----CCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHh-----------CCC----CCeEEeccCCCCceEEE
Q 014134 175 ----HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL-----------CLQ----NPLVLKSSFNRPNLFYE 235 (430)
Q Consensus 175 ----~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-----------~~~----~~~~~~~~~~~~~~~~~ 235 (430)
..+...+..+..+..++ +...|+|||||...+...+.... +.. .|..+........+.+.
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yF-dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~ 641 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYF-DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFE 641 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhc-CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccccc
Confidence 00111234556666655 46799999999865432211100 000 01111111110000000
Q ss_pred --------------EEecCcch--------------------hHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcC
Q 014134 236 --------------VRYKDLLD--------------------DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG 281 (430)
Q Consensus 236 --------------~~~~~~~~--------------------~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~ 281 (430)
.......+ ..+..+.+.+....++++||||.++++|+.+++.|.+.
T Consensus 642 ~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~ 721 (1123)
T PRK11448 642 KGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEA 721 (1123)
T ss_pred ccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 00000000 00122333333334579999999999999999887653
Q ss_pred ------CC---cceeecCCCCHHHHHHHHHHhhcCCc-eEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCC
Q 014134 282 ------GI---SCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351 (430)
Q Consensus 282 ------~~---~~~~~hg~~~~~~r~~~~~~f~~g~~-~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R 351 (430)
+. .+..+||+.+ ++..+++.|+++.. +|+|+++++.+|+|+|.+++||+++++.|...|.||+||+.|
T Consensus 722 f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR 799 (1123)
T PRK11448 722 FKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATR 799 (1123)
T ss_pred HHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhcc
Confidence 12 3456888875 46789999999886 699999999999999999999999999999999999999999
Q ss_pred CCC---CceEEEe
Q 014134 352 DQL---PSKSLLY 361 (430)
Q Consensus 352 ~g~---~g~~i~~ 361 (430)
... ...+.++
T Consensus 800 ~~~~~~K~~f~I~ 812 (1123)
T PRK11448 800 LCPEIGKTHFRIF 812 (1123)
T ss_pred CCccCCCceEEEE
Confidence 643 3344444
No 94
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.95 E-value=5e-26 Score=197.06 Aligned_cols=300 Identities=18% Similarity=0.192 Sum_probs=201.1
Q ss_pred cchHHHHHHHHHHH----cCCCEEEEcCCCChHHHHh---HHhhhcCCCeEEEEcchHHHHHHHHHHHHHcC--cceeEe
Q 014134 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCY---QIPALAKPGIVLVVSPLIALMENQVIGLKEKG--IAGEFL 108 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~----~~~~~lv~a~tGsGKT~~~---~~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~--~~~~~~ 108 (430)
++++.|..+-..+. +.++.+++|-||+|||.+. +-.+++.+.++.+.+|....+.+.+.+++.-. .+...+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L 176 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLL 176 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeE
Confidence 79999999877765 4579999999999999654 34457889999999999999999998888732 333333
Q ss_pred CCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHH
Q 014134 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~ 188 (430)
.+......+ .+.+|+|...+.+.... ++++|+||+|..--.. ...+........
T Consensus 177 yg~S~~~fr-------------------~plvVaTtHQLlrFk~a-----FD~liIDEVDAFP~~~--d~~L~~Av~~ar 230 (441)
T COG4098 177 YGDSDSYFR-------------------APLVVATTHQLLRFKQA-----FDLLIIDEVDAFPFSD--DQSLQYAVKKAR 230 (441)
T ss_pred ecCCchhcc-------------------ccEEEEehHHHHHHHhh-----ccEEEEeccccccccC--CHHHHHHHHHhh
Confidence 333322111 22278887755555443 6799999999863211 111112222222
Q ss_pred hhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEE-EEEecCcchhHH------HHHHHHHHhc--CCc
Q 014134 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY-EVRYKDLLDDAY------ADLCSVLKAN--GDT 259 (430)
Q Consensus 189 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~l~~~l~~~--~~~ 259 (430)
-++...|.+|||++....+++... ......+...+....+.. ........+.++ ..+..++++. .+.
T Consensus 231 --k~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~ 306 (441)
T COG4098 231 --KKEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGR 306 (441)
T ss_pred --cccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCC
Confidence 235669999999998876654432 122222222222211110 011111111111 2466666553 467
Q ss_pred eEEEEeCccccHHHHHHHHHcC-C-CcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCC-
Q 014134 260 CAIVYCLERTTCDELSAYLSAG-G-ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP- 336 (430)
Q Consensus 260 ~~iVf~~s~~~~~~l~~~l~~~-~-~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p- 336 (430)
+++||+++.+..++++..|++. + ..+..+|+.. ..|.+..+.|++|+.++||+|.+++||+.+|++++.+.-.--
T Consensus 307 P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~ 384 (441)
T COG4098 307 PVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHR 384 (441)
T ss_pred cEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcc
Confidence 9999999999999999999553 2 3457788753 578888999999999999999999999999999988865544
Q ss_pred -CCHHHHHHHhccCCCCCC--CceEEEeeCccchHH
Q 014134 337 -KSMEAFYQESGRAGRDQL--PSKSLLYYGMDDRRR 369 (430)
Q Consensus 337 -~s~~~~~q~~GR~~R~g~--~g~~i~~~~~~~~~~ 369 (430)
.+.+..+|..||+||.-. .|.+..|.......+
T Consensus 385 vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM 420 (441)
T COG4098 385 VFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAM 420 (441)
T ss_pred cccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHH
Confidence 578999999999999754 567776665544433
No 95
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=3.2e-26 Score=225.40 Aligned_cols=319 Identities=21% Similarity=0.229 Sum_probs=212.0
Q ss_pred HHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh---cCCCeEEEEcchHHHHHHHHHHHHH----cCc
Q 014134 31 RWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE----KGI 103 (430)
Q Consensus 31 ~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt~~L~~q~~~~~~~----~~~ 103 (430)
.+.+|. .|++.|.-+.=.+..|+ +....||+|||+++.++++ ..+..+-+++|+.-||.|-++.+.+ +|+
T Consensus 74 ~R~~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl 150 (796)
T PRK12906 74 KRVLGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGL 150 (796)
T ss_pred HHHhCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcCC
Confidence 344565 37777777655555554 9999999999999988875 4588899999999999998887665 688
Q ss_pred ceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHH---HHhhhcCCccEEEEecCcccc-c-------
Q 014134 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS-S------- 172 (430)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~---~~~~~~~~~~~lViDE~h~~~-~------- 172 (430)
.+....+......+...+. ++|.+++.--++-.-...++ ....-...+.+.|+||+|.++ |
T Consensus 151 ~vg~i~~~~~~~~r~~~y~--------~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLi 222 (796)
T PRK12906 151 TVGLNLNSMSPDEKRAAYN--------CDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLI 222 (796)
T ss_pred eEEEeCCCCCHHHHHHHhc--------CCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCcee
Confidence 8887776655554443332 34444433322211111111 011112346678888888763 1
Q ss_pred -cC--CCcHHHHHHHHHHHhh-----------------------------------------------------------
Q 014134 173 -WG--HDFRPSYRKLSSLRNY----------------------------------------------------------- 190 (430)
Q Consensus 173 -~~--~~~~~~~~~l~~~~~~----------------------------------------------------------- 190 (430)
.| ......+..+..+...
T Consensus 223 isg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~ 302 (796)
T PRK12906 223 ISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHID 302 (796)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHH
Confidence 00 0000000000000000
Q ss_pred --------C----------------------------------------------C----------------CCcEEEEE
Q 014134 191 --------L----------------------------------------------P----------------DVPILALT 200 (430)
Q Consensus 191 --------~----------------------------------------------~----------------~~~~i~~S 200 (430)
+ | -.++.+||
T Consensus 303 ~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmT 382 (796)
T PRK12906 303 QALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMT 382 (796)
T ss_pred HHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccC
Confidence 0 0 01466666
Q ss_pred cCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEE--EecCcchhHHHHHHHHHHhc--CCceEEEEeCccccHHHHHH
Q 014134 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSA 276 (430)
Q Consensus 201 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~ 276 (430)
+|.... ..++...++. + ++....+.|...... ........++..+.+.+... .+.++||||+|+..++.++.
T Consensus 383 GTa~~e-~~Ef~~iY~l-~--vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~ 458 (796)
T PRK12906 383 GTAKTE-EEEFREIYNM-E--VITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSH 458 (796)
T ss_pred CCCHHH-HHHHHHHhCC-C--EEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHH
Confidence 666433 2233332222 2 233333444333222 12223456888888888543 68899999999999999999
Q ss_pred HHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecccccccccc---Cce-----EEEEecCCCCHHHHHHHhcc
Q 014134 277 YLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---DVR-----LVCHFNIPKSMEAFYQESGR 348 (430)
Q Consensus 277 ~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~---~~~-----~vi~~~~p~s~~~~~q~~GR 348 (430)
.|.+.|++...+|+++...++..+.++++.|. |+|||++++||.|++ ++. +||+++.|.|...+.|+.||
T Consensus 459 ~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GR 536 (796)
T PRK12906 459 LLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGR 536 (796)
T ss_pred HHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhh
Confidence 99999999999999999888888887777776 999999999999995 888 99999999999999999999
Q ss_pred CCCCCCCceEEEeeCccc
Q 014134 349 AGRDQLPSKSLLYYGMDD 366 (430)
Q Consensus 349 ~~R~g~~g~~i~~~~~~~ 366 (430)
+||.|.+|.+.+|++.+|
T Consensus 537 tGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 537 SGRQGDPGSSRFYLSLED 554 (796)
T ss_pred hccCCCCcceEEEEeccc
Confidence 999999999999998774
No 96
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=6.9e-27 Score=226.98 Aligned_cols=331 Identities=18% Similarity=0.266 Sum_probs=220.3
Q ss_pred HhcCCccchHHHHHHH--HHHHcCCCEEEEcCCCChHHHHhHHhhhc----CCCeEEEEcchHHHHHHHHHHHHHcCcce
Q 014134 32 WHFGHAQFRDKQLDAI--QAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (430)
Q Consensus 32 ~~~g~~~~~~~Q~~~~--~~l~~~~~~lv~a~tGsGKT~~~~~~~l~----~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 105 (430)
...|...+..||.+++ +.++.++|++..+||+.|||+++.+-++. ....++.+.|....+.+....+..+....
T Consensus 217 ~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~ 296 (1008)
T KOG0950|consen 217 KDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDL 296 (1008)
T ss_pred HhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhcccc
Confidence 3468999999999975 56788899999999999999999877764 46788999999999888777777765443
Q ss_pred eEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHH----HHHhhhcCCccEEEEecCccccccCCC--cHH
Q 014134 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK----LKKIHSRGLLNLVAIDEAHCISSWGHD--FRP 179 (430)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~----~~~~~~~~~~~~lViDE~h~~~~~~~~--~~~ 179 (430)
.+...... +. .+...........|+|-++-+. +.+......+++||+||.|.+.+.+.. .+.
T Consensus 297 G~~ve~y~---------g~---~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~ 364 (1008)
T KOG0950|consen 297 GFPVEEYA---------GR---FPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILEL 364 (1008)
T ss_pred CCcchhhc---------cc---CCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHH
Confidence 33322111 11 1111112222226777664333 455556677899999999999886533 111
Q ss_pred HHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEE----ecCc-chhHHHHHH----
Q 014134 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR----YKDL-LDDAYADLC---- 250 (430)
Q Consensus 180 ~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~l~---- 250 (430)
.+..+. +...-...|+|+||||+++. ..+..++. ..++...+.+..+..... ..+. .......+.
T Consensus 365 ~l~k~~-y~~~~~~~~iIGMSATi~N~--~lL~~~L~---A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~ 438 (1008)
T KOG0950|consen 365 LLAKIL-YENLETSVQIIGMSATIPNN--SLLQDWLD---AFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYS 438 (1008)
T ss_pred HHHHHH-HhccccceeEeeeecccCCh--HHHHHHhh---hhheecccCcccchhccCCCcccccchhhHHHHHhhhhhh
Confidence 222221 11111235699999999986 23333332 122222222211111111 0000 111111111
Q ss_pred ------------HHHHhc--CCceEEEEeCccccHHHHHHHHHcC-----------------------------------
Q 014134 251 ------------SVLKAN--GDTCAIVYCLERTTCDELSAYLSAG----------------------------------- 281 (430)
Q Consensus 251 ------------~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~----------------------------------- 281 (430)
.+..+. .+.++||||++++.|+.++..+...
T Consensus 439 ~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~ 518 (1008)
T KOG0950|consen 439 SNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLA 518 (1008)
T ss_pred hhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHh
Confidence 111111 3556999999999999888655320
Q ss_pred ---CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecC----CCCHHHHHHHhccCCCCCC
Q 014134 282 ---GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI----PKSMEAFYQESGRAGRDQL 354 (430)
Q Consensus 282 ---~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~----p~s~~~~~q~~GR~~R~g~ 354 (430)
..++++||.+++.++|+.+...|++|.+.|++||++++.|+|+|...++|-.-. ..+..+|.||+|||||+|-
T Consensus 519 ~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 519 KTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred eeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhccc
Confidence 126789999999999999999999999999999999999999998888775332 3477899999999999974
Q ss_pred --CceEEEeeCccchHHHHHHHHhccCC
Q 014134 355 --PSKSLLYYGMDDRRRMEFILSKNQSK 380 (430)
Q Consensus 355 --~g~~i~~~~~~~~~~~~~~~~~~~~~ 380 (430)
.|.+++++...+.+.+..++......
T Consensus 599 dT~GdsiLI~k~~e~~~~~~lv~~~~~~ 626 (1008)
T KOG0950|consen 599 DTLGDSILIIKSSEKKRVRELVNSPLKP 626 (1008)
T ss_pred ccCcceEEEeeccchhHHHHHHhccccc
Confidence 68999999999998888887776544
No 97
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.2e-25 Score=222.24 Aligned_cols=312 Identities=21% Similarity=0.183 Sum_probs=211.6
Q ss_pred HhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh-c--CCCeEEEEcchHHHHHHHHHHHHH----cCcc
Q 014134 32 WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL-A--KPGIVLVVSPLIALMENQVIGLKE----KGIA 104 (430)
Q Consensus 32 ~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l-~--~~~~~lil~Pt~~L~~q~~~~~~~----~~~~ 104 (430)
+.+|.. |++.|.-+.=.+..| -+..++||+|||+++.+|++ + .+..+-|++||..||.|.++++.. +|+.
T Consensus 76 R~lg~~-~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGls 152 (830)
T PRK12904 76 RVLGMR-HFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLS 152 (830)
T ss_pred HHhCCC-CCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCe
Confidence 444643 677777655444444 49999999999999999885 2 366788999999999999998777 4677
Q ss_pred eeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHH-HHHHHhh--------hcCCccEEEEecCccccc---
Q 014134 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM-SKLKKIH--------SRGLLNLVAIDEAHCISS--- 172 (430)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~-~~~~~~~--------~~~~~~~lViDE~h~~~~--- 172 (430)
+....+..........+. ++ ++++||+.+ .++++.. ....+.++|+||||.++=
T Consensus 153 v~~i~~~~~~~er~~~y~--------~d------I~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeA 218 (830)
T PRK12904 153 VGVILSGMSPEERREAYA--------AD------ITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEA 218 (830)
T ss_pred EEEEcCCCCHHHHHHhcC--------CC------eEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccC
Confidence 777766655544433321 22 388888866 4443322 245588999999999731
Q ss_pred ------cC--CCcHHHHHHHHHHHhhCC---------CC-----------------------------------------
Q 014134 173 ------WG--HDFRPSYRKLSSLRNYLP---------DV----------------------------------------- 194 (430)
Q Consensus 173 ------~~--~~~~~~~~~l~~~~~~~~---------~~----------------------------------------- 194 (430)
.| ......+..+..+...+. ..
T Consensus 219 rtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~ 298 (830)
T PRK12904 219 RTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAH 298 (830)
T ss_pred CCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHH
Confidence 01 111122222222222221 11
Q ss_pred --------------------------------------------------------------------cEEEEEcCCCch
Q 014134 195 --------------------------------------------------------------------PILALTATAAPK 206 (430)
Q Consensus 195 --------------------------------------------------------------------~~i~~SAT~~~~ 206 (430)
++.+||+|....
T Consensus 299 ~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te 378 (830)
T PRK12904 299 ELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTE 378 (830)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHH
Confidence 234444444322
Q ss_pred hHHHHHHHhCCCCCeEEeccCCCCceEEE--EEecCcchhHHHHHHHHHHh--cCCceEEEEeCccccHHHHHHHHHcCC
Q 014134 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYE--VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGG 282 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~ 282 (430)
. .++...++ .+ ++....+.|.+... .........|+..+.+.+.+ ..+.++||||+|++.++.+++.|.+.|
T Consensus 379 ~-~E~~~iY~-l~--vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~g 454 (830)
T PRK12904 379 A-EEFREIYN-LD--VVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAG 454 (830)
T ss_pred H-HHHHHHhC-CC--EEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 1 11121111 11 11222222322222 11122335678888888865 567899999999999999999999999
Q ss_pred CcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCc-----------------------------------
Q 014134 283 ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV----------------------------------- 327 (430)
Q Consensus 283 ~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~----------------------------------- 327 (430)
++...+|++ +.+|+..+..|+.+...|+|||++++||+|++--
T Consensus 455 i~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 532 (830)
T PRK12904 455 IPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLE 532 (830)
T ss_pred CceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHH
Confidence 999999996 7899999999999999999999999999998732
Q ss_pred ---eEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccc
Q 014134 328 ---RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (430)
Q Consensus 328 ---~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~ 366 (430)
=+||....|.|..-=-|..||+||.|.+|.+-.|++-+|
T Consensus 533 ~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 533 AGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred cCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 157777778888889999999999999999999987664
No 98
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.94 E-value=1.2e-25 Score=227.49 Aligned_cols=320 Identities=20% Similarity=0.185 Sum_probs=202.6
Q ss_pred chHHHHHHHHHHHcC---C-CEEEEcCCCChHHHHhHHhhh----c---CCCeEEEEcchHHHHHHHHHHHHHcCcceeE
Q 014134 39 FRDKQLDAIQAVLSG---R-DCFCLMPTGGGKSMCYQIPAL----A---KPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (430)
Q Consensus 39 ~~~~Q~~~~~~l~~~---~-~~lv~a~tGsGKT~~~~~~~l----~---~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 107 (430)
.++.|..++..+.+. . .+++.||||+|||.+.+.++. + ...+++++.|++.+++++++.+.........
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccccc
Confidence 488999999998754 4 788999999999999887664 2 2678999999999999999999874322222
Q ss_pred eCC--CchHHHHHHHHhh----hhcCCCceeEEEECCccccChhHHHHH-HHh-----hhcCCccEEEEecCccccccCC
Q 014134 108 LSS--TQTMQVKTKIYED----LDSGKPSLRLLYVTPELTATPGFMSKL-KKI-----HSRGLLNLVAIDEAHCISSWGH 175 (430)
Q Consensus 108 ~~~--~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~v~T~~~~~~~-~~~-----~~~~~~~~lViDE~h~~~~~~~ 175 (430)
... ............. ......+-......+..+.||...... ... ...-..+++|+||+|.+.+..
T Consensus 276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~- 354 (733)
T COG1203 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET- 354 (733)
T ss_pred ccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc-
Confidence 211 1111100000000 000000000111122244444432221 000 111124689999999987753
Q ss_pred CcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccC----CCCceEEEEEecCcchhHHHHHHH
Q 014134 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF----NRPNLFYEVRYKDLLDDAYADLCS 251 (430)
Q Consensus 176 ~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~ 251 (430)
....+..+...... -+.+++++|||+|+.....+................ +.......... +...........
T Consensus 355 -~~~~l~~~i~~l~~-~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~ 431 (733)
T COG1203 355 -MLAALLALLEALAE-AGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERV-DVEDGPQEELIE 431 (733)
T ss_pred -hHHHHHHHHHHHHh-CCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccch-hhhhhhhHhhhh
Confidence 22222222222222 277899999999999888888777655444333221 11111111000 000110011122
Q ss_pred HHH--hcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhh----cCCceEEEEecccccccccc
Q 014134 252 VLK--ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI----SSRKQVVVATVAFGMGIDRK 325 (430)
Q Consensus 252 ~l~--~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~----~g~~~vLv~T~~~~~Gidi~ 325 (430)
... ...+++++|.|||+..|.++++.|+..+..+..+||.++..+|.+.++.++ .+...|+|||++++.|+|+.
T Consensus 432 ~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid 511 (733)
T COG1203 432 LISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID 511 (733)
T ss_pred cchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc
Confidence 111 125789999999999999999999998778999999999999998888655 46788999999999999988
Q ss_pred CceEEEEecCCCCHHHHHHHhccCCCCC--CCceEEEeeCcc
Q 014134 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQ--LPSKSLLYYGMD 365 (430)
Q Consensus 326 ~~~~vi~~~~p~s~~~~~q~~GR~~R~g--~~g~~i~~~~~~ 365 (430)
.+++|---.| ..+.+||+||++|.| ..|.++++....
T Consensus 512 -fd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 512 -FDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred -cCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 7877765555 999999999999999 567777776554
No 99
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=7.8e-25 Score=216.73 Aligned_cols=135 Identities=19% Similarity=0.197 Sum_probs=112.0
Q ss_pred hhHHHHHHHHHHh--cCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccc
Q 014134 243 DDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (430)
Q Consensus 243 ~~~~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 320 (430)
..|+..+.+.+.. ..+.|+||||+|++.++.++..|.+.|++...+|+++.+.+++.+.++|+.|. |+|||++++|
T Consensus 427 ~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGR 504 (896)
T PRK13104 427 ADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGR 504 (896)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccC
Confidence 4677777776643 36889999999999999999999999999999999999999999999999995 9999999999
Q ss_pred cccccCc--------------------------------------eEEEEecCCCCHHHHHHHhccCCCCCCCceEEEee
Q 014134 321 GIDRKDV--------------------------------------RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362 (430)
Q Consensus 321 Gidi~~~--------------------------------------~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~ 362 (430)
|+|+.=- =+||-..-+.|-.-=-|..||+||.|.+|.+-+|+
T Consensus 505 GtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~l 584 (896)
T PRK13104 505 GTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYL 584 (896)
T ss_pred CcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEE
Confidence 9998611 15666667778888899999999999999999998
Q ss_pred Cccch-------HHHHHHHHhccC
Q 014134 363 GMDDR-------RRMEFILSKNQS 379 (430)
Q Consensus 363 ~~~~~-------~~~~~~~~~~~~ 379 (430)
+-+|. +.+..+++.++.
T Consensus 585 SleD~l~~~f~~~~~~~~~~~~~~ 608 (896)
T PRK13104 585 SLEDNLMRIFASERVASMMRRLGM 608 (896)
T ss_pred EcCcHHHHHhChHHHHHHHHHcCC
Confidence 76652 334455555543
No 100
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.93 E-value=1.8e-23 Score=204.58 Aligned_cols=291 Identities=19% Similarity=0.245 Sum_probs=203.2
Q ss_pred HHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhh---hcCCCeEEEEcchHHHHHHHHHHHHH
Q 014134 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE 100 (430)
Q Consensus 24 ~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~Pt~~L~~q~~~~~~~ 100 (430)
.+.-+.+++..|+ .|+..|.--...+.+|+++-+.||||.|||.-.++.. ..++.+++|++||..|+.|+++.+.+
T Consensus 69 e~~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~ 147 (1187)
T COG1110 69 EEFEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKK 147 (1187)
T ss_pred HHHHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHH
Confidence 3444555555577 6999999999999999999999999999996544333 35688999999999999999999999
Q ss_pred cCccee-----E-eCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccC
Q 014134 101 KGIAGE-----F-LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (430)
Q Consensus 101 ~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~ 174 (430)
++.... . +++...........+.+...+.++ +|+|..++..-.+.....+++++++|++|.++..+
T Consensus 148 ~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdI--------litTs~FL~k~~e~L~~~kFdfifVDDVDA~Lkas 219 (1187)
T COG1110 148 FAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDI--------LITTSQFLSKRFEELSKLKFDFIFVDDVDAILKAS 219 (1187)
T ss_pred HHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccE--------EEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhcc
Confidence 753322 2 233334455566667777666555 89999988887777666779999999999886422
Q ss_pred CCcHHH-----------------------------HHHHHHHH---------hhCCCCcEEEEEcCCCchhH-HHH-HHH
Q 014134 175 HDFRPS-----------------------------YRKLSSLR---------NYLPDVPILALTATAAPKVQ-KDV-MES 214 (430)
Q Consensus 175 ~~~~~~-----------------------------~~~l~~~~---------~~~~~~~~i~~SAT~~~~~~-~~~-~~~ 214 (430)
.+.... ...+.+.. ......++++.|||..+.-. ..+ ...
T Consensus 220 kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReL 299 (1187)
T COG1110 220 KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFREL 299 (1187)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHH
Confidence 111100 01111111 11234579999999876532 222 222
Q ss_pred hCCCCCeEEeccCCCCceEEEEEecCcchhHHHHHHHHHHhcCCceEEEEeCc---cccHHHHHHHHHcCCCcceeecCC
Q 014134 215 LCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE---RTTCDELSAYLSAGGISCAAYHAG 291 (430)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s---~~~~~~l~~~l~~~~~~~~~~hg~ 291 (430)
++..-. .......++....... .....+.++++..+. -.|||++. ++.++++++.|+++|+++..+|++
T Consensus 300 lgFevG---~~~~~LRNIvD~y~~~----~~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~ 371 (1187)
T COG1110 300 LGFEVG---SGGEGLRNIVDIYVES----ESLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE 371 (1187)
T ss_pred hCCccC---ccchhhhheeeeeccC----ccHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc
Confidence 222111 1112223333222222 455566777776654 58999999 889999999999999999999984
Q ss_pred CCHHHHHHHHHHhhcCCceEEEEe----ccccccccccC-ceEEEEecCC
Q 014134 292 LNDKARSSVLDDWISSRKQVVVAT----VAFGMGIDRKD-VRLVCHFNIP 336 (430)
Q Consensus 292 ~~~~~r~~~~~~f~~g~~~vLv~T----~~~~~Gidi~~-~~~vi~~~~p 336 (430)
+...++.|..|++++||+. .++.||+|+|. +.++|+++.|
T Consensus 372 -----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 372 -----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred -----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 3677999999999999986 47899999997 5899999888
No 101
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.93 E-value=6.7e-24 Score=201.19 Aligned_cols=311 Identities=18% Similarity=0.173 Sum_probs=226.4
Q ss_pred ccchHHHHHHHHHHH----cCCCEEEEcCCCChHHHHhH--Hhhh----cCCCeEEEEcchHHHHHHHHHHHHHcCccee
Q 014134 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQ--IPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~----~~~~~lv~a~tGsGKT~~~~--~~~l----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 106 (430)
..+++||.+++.++. +|-+.|+....|-|||+-.+ +.-+ ...+..||+||...|.+ |.++++++.....
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~N-W~~Ef~rf~P~l~ 244 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDN-WMNEFKRFTPSLN 244 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHH-HHHHHHHhCCCcc
Confidence 379999999999986 46789999999999995432 2222 23567899999999876 8899999866666
Q ss_pred EeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHH
Q 014134 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (430)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~ 186 (430)
.....+....+......+.... ..++ +|+|.+....-......-+|+++||||+|++.+.. ..+..
T Consensus 245 ~~~~~Gdk~eR~~~~r~~~~~~-~fdV------~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~-------s~L~~ 310 (971)
T KOG0385|consen 245 VVVYHGDKEERAALRRDIMLPG-RFDV------CITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEK-------SKLSK 310 (971)
T ss_pred eEEEeCCHHHHHHHHHHhhccC-CCce------EeehHHHHHhhHHHHhcCCceEEEechhhhhcchh-------hHHHH
Confidence 6555555556655555544432 3344 66666654454555666679999999999998755 55666
Q ss_pred HHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEecc----------------------------------------
Q 014134 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---------------------------------------- 226 (430)
Q Consensus 187 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 226 (430)
..+.+.....+++|+||-.+...+++..+...-|-++...
T Consensus 311 ~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~ 390 (971)
T KOG0385|consen 311 ILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEK 390 (971)
T ss_pred HHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhh
Confidence 7777777779999999998877777777655444433210
Q ss_pred -CCC-----------------------------------------------------CceEEEEEecCc---------ch
Q 014134 227 -FNR-----------------------------------------------------PNLFYEVRYKDL---------LD 243 (430)
Q Consensus 227 -~~~-----------------------------------------------------~~~~~~~~~~~~---------~~ 243 (430)
..+ |.++........ ..
T Consensus 391 sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nS 470 (971)
T KOG0385|consen 391 SLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNS 470 (971)
T ss_pred cCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcC
Confidence 000 000000000000 00
Q ss_pred hHHHHHHHHHHh--cCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCC---ceEEEEeccc
Q 014134 244 DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR---KQVVVATVAF 318 (430)
Q Consensus 244 ~~~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~---~~vLv~T~~~ 318 (430)
.|+..|..++.. ..+.++|||..-....+-+.++.--+++..+.+.|.++.++|...++.|.... .-.|++|.+.
T Consensus 471 GKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAG 550 (971)
T KOG0385|consen 471 GKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAG 550 (971)
T ss_pred cceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccc
Confidence 222233333322 25789999998888889999988888999999999999999999999999654 3478999999
Q ss_pred cccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEee
Q 014134 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362 (430)
Q Consensus 319 ~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~ 362 (430)
+.|||+..+|+||.||..|+|+.=+|...||+|.|+...+.+|-
T Consensus 551 GLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~R 594 (971)
T KOG0385|consen 551 GLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYR 594 (971)
T ss_pred ccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEE
Confidence 99999999999999999999999999999999999988777763
No 102
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=2.4e-23 Score=204.20 Aligned_cols=321 Identities=20% Similarity=0.230 Sum_probs=223.5
Q ss_pred ccchHHHHHHHHHHHcC----CCEEEEcCCCChHHHHhHHhh---hcCCCeEEEEcchHHHHHHHHHHHHH-cCcceeEe
Q 014134 37 AQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFL 108 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~~~----~~~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~ 108 (430)
..+++-|+.++..+... +..++.+.||||||.+|+-.+ +.++..+|+|+|-.+|-.|+..+|+. +|....++
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vl 276 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVL 276 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhh
Confidence 36889999999999765 679999999999999997544 67899999999999999999999988 78888889
Q ss_pred CCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCC-CcHHHHHHHHHH
Q 014134 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRPSYRKLSSL 187 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~-~~~~~~~~l~~~ 187 (430)
++......+...+....... .++ +|+| +..-+.++.++++||+||-|.-.-... ..+..-+.+.-.
T Consensus 277 HS~Ls~~er~~~W~~~~~G~--~~v------VIGt-----RSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~ 343 (730)
T COG1198 277 HSGLSPGERYRVWRRARRGE--ARV------VIGT-----RSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVL 343 (730)
T ss_pred cccCChHHHHHHHHHHhcCC--ceE------EEEe-----chhhcCchhhccEEEEeccccccccCCcCCCcCHHHHHHH
Confidence 99888888888888887766 445 5555 222233467799999999998632111 122223555656
Q ss_pred HhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCC---CCceEEEEEecCcchh---HHHHHHHHHHh--cCCc
Q 014134 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYEVRYKDLLDD---AYADLCSVLKA--NGDT 259 (430)
Q Consensus 188 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~l~~~l~~--~~~~ 259 (430)
+....++++|+-||||+-+....... +......+..... .+.+............ --..+.+.+++ ..++
T Consensus 344 Ra~~~~~pvvLgSATPSLES~~~~~~--g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~ge 421 (730)
T COG1198 344 RAKKENAPVVLGSATPSLESYANAES--GKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGE 421 (730)
T ss_pred HHHHhCCCEEEecCCCCHHHHHhhhc--CceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCC
Confidence 66667999999999999876553321 1111122222222 2222222211111111 11334444433 2577
Q ss_pred eEEEEeCcc------------------------------------------------------------ccHHHHHHHHH
Q 014134 260 CAIVYCLER------------------------------------------------------------TTCDELSAYLS 279 (430)
Q Consensus 260 ~~iVf~~s~------------------------------------------------------------~~~~~l~~~l~ 279 (430)
++|+|.|.+ ..++++++.|.
T Consensus 422 Q~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~ 501 (730)
T COG1198 422 QVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELK 501 (730)
T ss_pred eEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHH
Confidence 899998843 12366777776
Q ss_pred cC--CCcceeecCCCCHHH--HHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCCC------------CHHHHH
Q 014134 280 AG--GISCAAYHAGLNDKA--RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------SMEAFY 343 (430)
Q Consensus 280 ~~--~~~~~~~hg~~~~~~--r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~------------s~~~~~ 343 (430)
+. +.+++.+.++.+... -+..+..|.+|+.+|||.|++++.|.|+|+++.|...+... ....+.
T Consensus 502 ~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~ 581 (730)
T COG1198 502 RLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLM 581 (730)
T ss_pred HHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHH
Confidence 64 456777777765533 46789999999999999999999999999999988776542 345678
Q ss_pred HHhccCCCCCCCceEEEeeCccchHHHHH
Q 014134 344 QESGRAGRDQLPSKSLLYYGMDDRRRMEF 372 (430)
Q Consensus 344 q~~GR~~R~g~~g~~i~~~~~~~~~~~~~ 372 (430)
|-.||+||.+..|.+++-....|-..+..
T Consensus 582 QvaGRAgR~~~~G~VvIQT~~P~hp~i~~ 610 (730)
T COG1198 582 QVAGRAGRAGKPGEVVIQTYNPDHPAIQA 610 (730)
T ss_pred HHHhhhccCCCCCeEEEEeCCCCcHHHHH
Confidence 99999999999999998866555333333
No 103
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.92 E-value=2.2e-22 Score=199.37 Aligned_cols=132 Identities=22% Similarity=0.323 Sum_probs=115.2
Q ss_pred hHHHHHHHHHHh--cCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecccccc
Q 014134 244 DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (430)
Q Consensus 244 ~~~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~G 321 (430)
..++.+.+.++. ..+.++||||++++.++.+++.|.+.|+++..+||++++.+|..+++.|+.|+++|||||+.+++|
T Consensus 426 ~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rG 505 (655)
T TIGR00631 426 GQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREG 505 (655)
T ss_pred chHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCC
Confidence 344455555543 256789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCceEEEEec-----CCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHh
Q 014134 322 IDRKDVRLVCHFN-----IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (430)
Q Consensus 322 idi~~~~~vi~~~-----~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~ 376 (430)
+|+|++++||+++ .|.+..+|+||+||+||. ..|.+++|.+..+......+.+.
T Consensus 506 fDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 506 LDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred eeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 9999999999988 799999999999999998 68999999988765554444443
No 104
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.92 E-value=8.4e-24 Score=183.34 Aligned_cols=181 Identities=23% Similarity=0.279 Sum_probs=133.4
Q ss_pred CCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc--------CCCeEEEEcchH
Q 014134 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA--------KPGIVLVVSPLI 88 (430)
Q Consensus 17 ~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~--------~~~~~lil~Pt~ 88 (430)
|+++++++.+.+.+.+ +|+..|+++|.++++.+.+++++++++|||+|||+++++++++ .+++++|++|++
T Consensus 1 ~~~~~~~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~ 79 (203)
T cd00268 1 FEELGLSPELLRGIYA-LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTR 79 (203)
T ss_pred CCcCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCH
Confidence 5788999999999998 8999999999999999999999999999999999999888762 356899999999
Q ss_pred HHHHHHHHHHHHcC----cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh--hcCCccEE
Q 014134 89 ALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SRGLLNLV 162 (430)
Q Consensus 89 ~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~--~~~~~~~l 162 (430)
+|+.|+.+.+..++ .......+........... . .. . +++|+||+.+..+.... ....++++
T Consensus 80 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~--~------~iiv~T~~~l~~~l~~~~~~~~~l~~l 147 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL---K-RG--P------HIVVATPGRLLDLLERGKLDLSKVKYL 147 (203)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh---c-CC--C------CEEEEChHHHHHHHHcCCCChhhCCEE
Confidence 99999999888863 3333333333222211111 1 11 2 22899999777765433 34568899
Q ss_pred EEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHh
Q 014134 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESL 215 (430)
Q Consensus 163 ViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~ 215 (430)
|+||+|.+.+.+ +...+. .+...++ +.+++++|||+++.........+
T Consensus 148 IvDE~h~~~~~~--~~~~~~---~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~ 196 (203)
T cd00268 148 VLDEADRMLDMG--FEDQIR---EILKLLPKDRQTLLFSATMPKEVRDLARKFL 196 (203)
T ss_pred EEeChHHhhccC--hHHHHH---HHHHhCCcccEEEEEeccCCHHHHHHHHHHC
Confidence 999999987655 443333 3333344 78899999999987766554443
No 105
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=5.3e-23 Score=203.51 Aligned_cols=121 Identities=18% Similarity=0.153 Sum_probs=95.1
Q ss_pred hhHHHHHHHHHHhc--CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCC-ceEEEEecccc
Q 014134 243 DDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFG 319 (430)
Q Consensus 243 ~~~~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~-~~vLv~T~~~~ 319 (430)
..++..+.+.+... .+.++||.|.|.+..+.++..|.+.|++...++..-...+-.-+- ..|+ -.|.|||.+++
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia---~AG~~g~VTIATNmAG 627 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIA---GAGKLGAVTVATNMAG 627 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHH---hcCCCCcEEEeecccc
Confidence 35666666655442 577999999999999999999999999988888864333322222 2354 45999999999
Q ss_pred ccccccC--------ceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccc
Q 014134 320 MGIDRKD--------VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (430)
Q Consensus 320 ~Gidi~~--------~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~ 366 (430)
||.|+.- ==+||....|.|..--.|..||+||.|.+|.+..|++-+|
T Consensus 628 RGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlED 682 (970)
T PRK12899 628 RGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFED 682 (970)
T ss_pred CCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 9999852 1267788889999999999999999999999999987765
No 106
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.92 E-value=2.3e-23 Score=207.36 Aligned_cols=308 Identities=17% Similarity=0.149 Sum_probs=210.1
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC----CCeEEEEcchHHHHHHHHHHHHH-cCcceeEeCCCchH
Q 014134 40 RDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTM 114 (430)
Q Consensus 40 ~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~----~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~~ 114 (430)
+....+.+..+.++.-++++||||||||...-..+++. +..+.+.-|.|--|..+++.+.+ ++.......++..
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~i- 130 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSI- 130 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEE-
Confidence 34455677777788899999999999997765555544 45788888998666666666544 3322111111000
Q ss_pred HHHHHHHhhhhcCCCceeEEEECCccccChhHHHHH-HHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCC-
Q 014134 115 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP- 192 (430)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~-~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~- 192 (430)
..++..+.. |.+-+.|.|.+.+. .....++.+++||+||+|. +.-+..-.+..+..+....+
T Consensus 131 -----Rfe~~~s~~--------Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHE---RSl~tDilLgllk~~~~~rr~ 194 (845)
T COG1643 131 -----RFESKVSPR--------TRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHE---RSLNTDILLGLLKDLLARRRD 194 (845)
T ss_pred -----EeeccCCCC--------ceeEEeccHHHHHHHhhCcccccCCEEEEcchhh---hhHHHHHHHHHHHHHHhhcCC
Confidence 000001111 12267888876665 4456688899999999998 33323334455666555555
Q ss_pred CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEe-cCc-chhHHHHHHHHHHhcCCceEEEEeCcccc
Q 014134 193 DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY-KDL-LDDAYADLCSVLKANGDTCAIVYCLERTT 270 (430)
Q Consensus 193 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~~~l~~~~~~~~iVf~~s~~~ 270 (430)
+.++|.||||+...... .++.....+.+.....+..+.+.... .+. ....+..........+.+.+|||.+...+
T Consensus 195 DLKiIimSATld~~rfs---~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~E 271 (845)
T COG1643 195 DLKLIIMSATLDAERFS---AYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQRE 271 (845)
T ss_pred CceEEEEecccCHHHHH---HHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHH
Confidence 68999999999986443 44433333334444444444442222 221 23333333444444467789999999999
Q ss_pred HHHHHHHHHc----CCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecC-----------
Q 014134 271 CDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI----------- 335 (430)
Q Consensus 271 ~~~l~~~l~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~----------- 335 (430)
.+..++.|.+ ....+..+||.++.++..++++---.|..+|+++|+++++++.+|++.+||..+.
T Consensus 272 I~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g 351 (845)
T COG1643 272 IERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTG 351 (845)
T ss_pred HHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccC
Confidence 9999999987 3467889999999999999888777887889999999999999999999996554
Q ss_pred -------CCCHHHHHHHhccCCCCCCCceEEEeeCccchH
Q 014134 336 -------PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (430)
Q Consensus 336 -------p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~ 368 (430)
|-|-++.-||.||+||. .+|.|+=++++++..
T Consensus 352 ~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~~ 390 (845)
T COG1643 352 LTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEEDFL 390 (845)
T ss_pred ceeeeEEEechhhhhhhccccccC-CCceEEEecCHHHHH
Confidence 45888999999999998 589999999885433
No 107
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.91 E-value=1.1e-22 Score=197.34 Aligned_cols=104 Identities=23% Similarity=0.223 Sum_probs=86.2
Q ss_pred cceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecC-CCCHHHHHHHhccCCCCCCCceEEEee
Q 014134 284 SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-PKSMEAFYQESGRAGRDQLPSKSLLYY 362 (430)
Q Consensus 284 ~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~-p~s~~~~~q~~GR~~R~g~~g~~i~~~ 362 (430)
++++||++|+...|..++-.|+.|...||++|.+++-|||+|.-++|+-.|. -.++-+|.|+.||+||.|-.-.+.+.+
T Consensus 964 GiG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~F 1043 (1330)
T KOG0949|consen 964 GIGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVF 1043 (1330)
T ss_pred cccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEE
Confidence 5689999999999999999999999999999999999999996666665553 357899999999999999876666666
Q ss_pred CccchHHHHHHHHhccCCCCCchhh
Q 014134 363 GMDDRRRMEFILSKNQSKNSQSFST 387 (430)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (430)
-.-..+.++.++..+-+.....++-
T Consensus 1044 mgiP~~kv~rLlts~L~diqG~~p~ 1068 (1330)
T KOG0949|consen 1044 MGIPRQKVQRLLTSLLPDIQGAYPY 1068 (1330)
T ss_pred EeCcHHHHHHHHHHhhhcccCCCcc
Confidence 6666788888888877765544443
No 108
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=1.6e-22 Score=199.88 Aligned_cols=137 Identities=20% Similarity=0.190 Sum_probs=114.9
Q ss_pred hhHHHHHHHHHHh--cCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccc
Q 014134 243 DDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (430)
Q Consensus 243 ~~~~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 320 (430)
..|+..+.+.+.+ ..+.++||||+|++.++.++..|.+.+++...+|++.++.++..+.++|+.|. |+|||++++|
T Consensus 432 ~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGR 509 (908)
T PRK13107 432 DEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGR 509 (908)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCC
Confidence 4666666666654 36789999999999999999999999999999999999999999999999998 9999999999
Q ss_pred cccccC-------------------------------------ceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeC
Q 014134 321 GIDRKD-------------------------------------VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363 (430)
Q Consensus 321 Gidi~~-------------------------------------~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~ 363 (430)
|.|+.= ==+||-...+.|..-=-|..||+||.|.+|.+-+|++
T Consensus 510 GTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lS 589 (908)
T PRK13107 510 GTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLS 589 (908)
T ss_pred CcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEE
Confidence 999861 1257777778888888999999999999999999988
Q ss_pred ccch-------HHHHHHHHhccCCC
Q 014134 364 MDDR-------RRMEFILSKNQSKN 381 (430)
Q Consensus 364 ~~~~-------~~~~~~~~~~~~~~ 381 (430)
-+|. +.+..+++.++..+
T Consensus 590 lED~L~r~f~~~~~~~~~~~~~~~e 614 (908)
T PRK13107 590 MEDSLMRIFASDRVSGMMKKLGMEE 614 (908)
T ss_pred eCcHHHHHhChHHHHHHHHHcCCCC
Confidence 7654 44556666665443
No 109
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=9.3e-23 Score=194.34 Aligned_cols=313 Identities=16% Similarity=0.113 Sum_probs=219.9
Q ss_pred ccchHHHHHHHHHHHc----CCCEEEEcCCCChHHH---HhHHhhhcC---CCeEEEEcchHHHHHHHHHHHHHcCccee
Q 014134 37 AQFRDKQLDAIQAVLS----GRDCFCLMPTGGGKSM---CYQIPALAK---PGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~~----~~~~lv~a~tGsGKT~---~~~~~~l~~---~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 106 (430)
..+.+||++++.++.+ +...|+....|-|||. +|+.++... ..++|||||.. +..||.++|..++....
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~T-ii~qW~~E~~~w~p~~r 282 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPAT-IIHQWMKEFQTWWPPFR 282 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHH-HHHHHHHHHHHhCcceE
Confidence 3689999999999874 5678999999999993 343333333 36799999985 67789999999766544
Q ss_pred EeC--CCchHHH-----HHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHH
Q 014134 107 FLS--STQTMQV-----KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179 (430)
Q Consensus 107 ~~~--~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~ 179 (430)
+.. +...... ....++.+.. -.......++++|...+...........|+++|+||.|++.+.+
T Consensus 283 v~ilh~t~s~~r~~~~~~~~~~~~~L~----r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpn----- 353 (923)
T KOG0387|consen 283 VFILHGTGSGARYDASHSSHKKDKLLI----RKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPN----- 353 (923)
T ss_pred EEEEecCCcccccccchhhhhhhhhhe----eeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCc-----
Confidence 433 2222110 0001111000 01111222367776655555444555669999999999998766
Q ss_pred HHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEec----------------cCCC--------------
Q 014134 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS----------------SFNR-------------- 229 (430)
Q Consensus 180 ~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~-------------- 229 (430)
..+...+..++..+.|++|+||-.+...+++..+....|..+.. ..+.
T Consensus 354 --s~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~ 431 (923)
T KOG0387|consen 354 --SKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVA 431 (923)
T ss_pred --cHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHH
Confidence 56666777788889999999999888887776554433221100 0000
Q ss_pred --------------------------------------------------------------------------CceEEE
Q 014134 230 --------------------------------------------------------------------------PNLFYE 235 (430)
Q Consensus 230 --------------------------------------------------------------------------~~~~~~ 235 (430)
|.+...
T Consensus 432 Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~ 511 (923)
T KOG0387|consen 432 LRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDR 511 (923)
T ss_pred HHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccC
Confidence 000000
Q ss_pred E--Ee---cC-----cchhHHHHHHHHHHh--cCCceEEEEeCccccHHHHHHHHH-cCCCcceeecCCCCHHHHHHHHH
Q 014134 236 V--RY---KD-----LLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLS-AGGISCAAYHAGLNDKARSSVLD 302 (430)
Q Consensus 236 ~--~~---~~-----~~~~~~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~-~~~~~~~~~hg~~~~~~r~~~~~ 302 (430)
. .. .+ ....++..+..+++. ..+.++|+|..++...+-+...|. ..++.+..+.|..+...|..+++
T Consensus 512 ~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd 591 (923)
T KOG0387|consen 512 RDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVD 591 (923)
T ss_pred cccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHH
Confidence 0 00 00 001355555555543 356699999999999999999998 57999999999999999999999
Q ss_pred HhhcCCce--EEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEe
Q 014134 303 DWISSRKQ--VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (430)
Q Consensus 303 ~f~~g~~~--vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~ 361 (430)
.|+++... .|++|.+.+-|+|+.+++-||.||+.|+|+.=.|..-|+-|.|+...+++|
T Consensus 592 ~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 592 RFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred hhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 99987753 688999999999999999999999999999999999999999998877776
No 110
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.90 E-value=1.1e-21 Score=196.72 Aligned_cols=291 Identities=16% Similarity=0.114 Sum_probs=175.2
Q ss_pred chHHHHHHHHHHH----c------CCCEEEEcCCCChHHHHhHHhhh-----cCCCeEEEEcchHHHHHHHHHHHHHcCc
Q 014134 39 FRDKQLDAIQAVL----S------GRDCFCLMPTGGGKSMCYQIPAL-----AKPGIVLVVSPLIALMENQVIGLKEKGI 103 (430)
Q Consensus 39 ~~~~Q~~~~~~l~----~------~~~~lv~a~tGsGKT~~~~~~~l-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 103 (430)
++.+|..|+..+. + .+..++++|||||||++.+..+. ....++|+|+|+.+|..|+.+.+..++.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~ 318 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQK 318 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCC
Confidence 7889999988864 2 24799999999999987654432 2467899999999999999999999764
Q ss_pred ceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHH-h---hhcCCc-cEEEEecCccccccCCCcH
Q 014134 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-I---HSRGLL-NLVAIDEAHCISSWGHDFR 178 (430)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~-~---~~~~~~-~~lViDE~h~~~~~~~~~~ 178 (430)
..... ... ...+...+......+ +|+|...+..... . .....- -+||+||||+....
T Consensus 319 ~~~~~-~~s----~~~L~~~l~~~~~~i--------ivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~----- 380 (667)
T TIGR00348 319 DCAER-IES----IAELKRLLEKDDGGI--------IITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG----- 380 (667)
T ss_pred CCCcc-cCC----HHHHHHHHhCCCCCE--------EEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch-----
Confidence 31111 111 111222222222223 7888876654221 1 111111 28999999996431
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCC-CCeEEe--------ccCCCCceEEEEEecCc--------
Q 014134 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ-NPLVLK--------SSFNRPNLFYEVRYKDL-------- 241 (430)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~-------- 241 (430)
.....+...+|+...++|||||.......-...++.. ...+.. .+... .+.+.......
T Consensus 381 ---~~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~-~i~Y~~~~~~~~~~~~~l~ 456 (667)
T TIGR00348 381 ---ELAKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTV-KIDYEDRLPEDHLDRKKLD 456 (667)
T ss_pred ---HHHHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCee-eEEEEecchhhccChHHHH
Confidence 1113344678899999999999653111111111110 011110 00000 01111000000
Q ss_pred --------------ch--------------------hHHHH----HHHHHHh---cCCceEEEEeCccccHHHHHHHHHc
Q 014134 242 --------------LD--------------------DAYAD----LCSVLKA---NGDTCAIVYCLERTTCDELSAYLSA 280 (430)
Q Consensus 242 --------------~~--------------------~~~~~----l~~~l~~---~~~~~~iVf~~s~~~~~~l~~~l~~ 280 (430)
.. ..+.. +.+.... ..+.+++|+|.++..|..+++.|.+
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~ 536 (667)
T TIGR00348 457 AFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDE 536 (667)
T ss_pred HHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHh
Confidence 00 00111 1111111 1247899999999999999998866
Q ss_pred C-----CCcceeecCCCCHH---------------------HHHHHHHHhhc-CCceEEEEeccccccccccCceEEEEe
Q 014134 281 G-----GISCAAYHAGLNDK---------------------ARSSVLDDWIS-SRKQVVVATVAFGMGIDRKDVRLVCHF 333 (430)
Q Consensus 281 ~-----~~~~~~~hg~~~~~---------------------~r~~~~~~f~~-g~~~vLv~T~~~~~Gidi~~~~~vi~~ 333 (430)
. +.....+++..+.. ....++++|++ +..++||+++++.+|+|.|.+++++..
T Consensus 537 ~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyld 616 (667)
T TIGR00348 537 ELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLD 616 (667)
T ss_pred hcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEe
Confidence 4 23345556554332 22478889986 678999999999999999999999888
Q ss_pred cCCCCHHHHHHHhccCCCC
Q 014134 334 NIPKSMEAFYQESGRAGRD 352 (430)
Q Consensus 334 ~~p~s~~~~~q~~GR~~R~ 352 (430)
.+-.+. .++|.+||+.|.
T Consensus 617 Kplk~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 617 KPLKYH-GLLQAIARTNRI 634 (667)
T ss_pred cccccc-HHHHHHHHhccc
Confidence 866654 589999999993
No 111
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.90 E-value=3.1e-22 Score=188.56 Aligned_cols=299 Identities=18% Similarity=0.172 Sum_probs=206.5
Q ss_pred HHHHHHHHcCCCEEEEcCCCChHHHHhHHhh----hcCCCeEEEEcchHHHHHHHHHHHHH-c----CcceeEeCCCchH
Q 014134 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPLIALMENQVIGLKE-K----GIAGEFLSSTQTM 114 (430)
Q Consensus 44 ~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~----l~~~~~~lil~Pt~~L~~q~~~~~~~-~----~~~~~~~~~~~~~ 114 (430)
.+.+..+.+++-+++.|+||||||.-.--.+ ....+.+-+.-|.|--|..++++... . |..+......
T Consensus 57 ~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRF--- 133 (674)
T KOG0922|consen 57 DQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRF--- 133 (674)
T ss_pred HHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEe---
Confidence 3466666678889999999999996532222 23345588888998766666655433 2 2222211100
Q ss_pred HHHHHHHhhhhcCCCceeEEEECCccccChhHHH-HHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCC
Q 014134 115 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS-KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD 193 (430)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~-~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~ 193 (430)
++..+.. -++ ...|.+.+. .++....+..+++||+||||. +.-...-++..++.+....+.
T Consensus 134 -------ed~ts~~--Tri------kymTDG~LLRE~l~Dp~LskYsvIIlDEAHE---Rsl~TDiLlGlLKki~~~R~~ 195 (674)
T KOG0922|consen 134 -------EDSTSKD--TRI------KYMTDGMLLREILKDPLLSKYSVIILDEAHE---RSLHTDILLGLLKKILKKRPD 195 (674)
T ss_pred -------cccCCCc--eeE------EEecchHHHHHHhcCCccccccEEEEechhh---hhhHHHHHHHHHHHHHhcCCC
Confidence 1111111 122 677888544 455666688899999999998 443344455667777777788
Q ss_pred CcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEe-cCcchhHHHHHHHHHHhcCCceEEEEeCccccHH
Q 014134 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY-KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCD 272 (430)
Q Consensus 194 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~ 272 (430)
.++|++|||+..+... .++..-....+.+...+..+.+.... .+-.+..+..+.++-...+.+-+|||...+++++
T Consensus 196 LklIimSATlda~kfS---~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe 272 (674)
T KOG0922|consen 196 LKLIIMSATLDAEKFS---EYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIE 272 (674)
T ss_pred ceEEEEeeeecHHHHH---HHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHH
Confidence 8999999999876443 34433333334444444444333321 2222344555555555567778999999999999
Q ss_pred HHHHHHHcC----CC----cceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecC---------
Q 014134 273 ELSAYLSAG----GI----SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI--------- 335 (430)
Q Consensus 273 ~l~~~l~~~----~~----~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~--------- 335 (430)
.+++.|.+. +- -+..+||.++.++..++.+.--.|..+|+++|.+++..+.+|++.+||..+.
T Consensus 273 ~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~ 352 (674)
T KOG0922|consen 273 AACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPR 352 (674)
T ss_pred HHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccc
Confidence 999998774 11 2467999999999999988887899999999999999999999999996544
Q ss_pred ---------CCCHHHHHHHhccCCCCCCCceEEEeeCccch
Q 014134 336 ---------PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (430)
Q Consensus 336 ---------p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~ 367 (430)
|-|.++-.||.||+||. ++|.|+-++++++.
T Consensus 353 ~g~~~L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 353 TGLDSLIVVPISKASANQRAGRAGRT-GPGKCYRLYTESAY 392 (674)
T ss_pred cCccceeEEechHHHHhhhcccCCCC-CCceEEEeeeHHHH
Confidence 45889999999999998 48999999988765
No 112
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.90 E-value=5.5e-21 Score=191.00 Aligned_cols=141 Identities=23% Similarity=0.331 Sum_probs=118.9
Q ss_pred HHHHHHHHHh--cCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecccccccc
Q 014134 246 YADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (430)
Q Consensus 246 ~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gid 323 (430)
+..+.+.+.. ..+.++||||++++.++.+++.|.+.|+++..+||++++.+|..+++.|+.|++.|+|||+.+++|+|
T Consensus 432 ~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfd 511 (652)
T PRK05298 432 VDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLD 511 (652)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcc
Confidence 4444444433 24678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCceEEEEecC-----CCCHHHHHHHhccCCCCCCCceEEEeeCc---------cchHHHHHHHHhccCCCCCchhh
Q 014134 324 RKDVRLVCHFNI-----PKSMEAFYQESGRAGRDQLPSKSLLYYGM---------DDRRRMEFILSKNQSKNSQSFST 387 (430)
Q Consensus 324 i~~~~~vi~~~~-----p~s~~~~~q~~GR~~R~g~~g~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 387 (430)
+|++++||+++. |.+..+|+||+||+||. ..|.+++|++. .+....+.+....+.+....+.+
T Consensus 512 lp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 588 (652)
T PRK05298 512 IPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKT 588 (652)
T ss_pred ccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChh
Confidence 999999999885 78999999999999996 78999999984 45566666666555554444444
No 113
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.90 E-value=6.3e-22 Score=181.34 Aligned_cols=168 Identities=20% Similarity=0.282 Sum_probs=125.0
Q ss_pred CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCcchhHHHHHHHHHHh--cCCceEEEEeCcccc
Q 014134 193 DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTT 270 (430)
Q Consensus 193 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~iVf~~s~~~ 270 (430)
..|+|++||||.+........ ..-..++-.++...|.+. +... ...++.|...++. ..+.+++|-+-|++.
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~--~vveQiIRPTGLlDP~ie--vRp~---~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGG--NVVEQIIRPTGLLDPEIE--VRPT---KGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred cCCEEEEECCCChHHHHhccC--ceeEEeecCCCCCCCcee--eecC---CCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 348999999998864331110 000111111222222222 2211 2233444444433 246899999999999
Q ss_pred HHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCC-----CCHHHHHHH
Q 014134 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP-----KSMEAFYQE 345 (430)
Q Consensus 271 ~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p-----~s~~~~~q~ 345 (430)
|+.+.++|.+.|+++..+|++...-+|.+++..++.|.++|||....+-+|+|+|.|++|.++|.. +|..+++|.
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998864 689999999
Q ss_pred hccCCCCCCCceEEEeeCccchH
Q 014134 346 SGRAGRDQLPSKSLLYYGMDDRR 368 (430)
Q Consensus 346 ~GR~~R~g~~g~~i~~~~~~~~~ 368 (430)
+||++|. -.|.++.+.+.--..
T Consensus 539 IGRAARN-~~GkvIlYAD~iT~s 560 (663)
T COG0556 539 IGRAARN-VNGKVILYADKITDS 560 (663)
T ss_pred HHHHhhc-cCCeEEEEchhhhHH
Confidence 9999996 578999887654333
No 114
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.89 E-value=6.2e-23 Score=203.34 Aligned_cols=361 Identities=17% Similarity=0.202 Sum_probs=259.9
Q ss_pred cchHHHHHHHHHHHcC-CCEEEEcCCCChHHHHhHHhhhcC--CCeEEEEcchHHHHHHHHHHHHH-c----CcceeEeC
Q 014134 38 QFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK--PGIVLVVSPLIALMENQVIGLKE-K----GIAGEFLS 109 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~-~~~lv~a~tGsGKT~~~~~~~l~~--~~~~lil~Pt~~L~~q~~~~~~~-~----~~~~~~~~ 109 (430)
..+++|.+.++.+.+. .++++.||+|||||.++.++++.. ..++++++|..+.+..+++.|.. + |.......
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ 1222 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLT 1222 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecC
Confidence 3488999999998875 589999999999999999999865 46899999999999988877765 2 22222222
Q ss_pred CCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCcccccc-CCCcHHHHHHHHHHH
Q 014134 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW-GHDFRPSYRKLSSLR 188 (430)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~-~~~~~~~~~~l~~~~ 188 (430)
+....+.. .+....++++||..+..+. ....+++.|.||.|.+... |..+.-..+ ++.+.
T Consensus 1223 ge~s~~lk---------------l~~~~~vii~tpe~~d~lq---~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia 1283 (1674)
T KOG0951|consen 1223 GETSLDLK---------------LLQKGQVIISTPEQWDLLQ---SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIA 1283 (1674)
T ss_pred CccccchH---------------HhhhcceEEechhHHHHHh---hhhhcceEeeehhhhhcccCCceEEEEee-HHHHH
Confidence 22222111 1111222899999887774 4556889999999998753 222222223 34444
Q ss_pred hhC-CCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEE--EEecC--cch--------hHHHHHHHHHHh
Q 014134 189 NYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE--VRYKD--LLD--------DAYADLCSVLKA 255 (430)
Q Consensus 189 ~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~--------~~~~~l~~~l~~ 255 (430)
.++ .+.+++.+|..+.+. + ..++.....++...+........ +...+ ... ..+..+.+...
T Consensus 1284 ~q~~k~ir~v~ls~~lana--~---d~ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~- 1357 (1674)
T KOG0951|consen 1284 SQLEKKIRVVALSSSLANA--R---DLIGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAG- 1357 (1674)
T ss_pred HHHHhheeEEEeehhhccc--h---hhccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhc-
Confidence 443 377899999998886 2 22566666666655544332222 22111 111 22233333322
Q ss_pred cCCceEEEEeCccccHHHHHHHHHcC----------------------CCcceeecCCCCHHHHHHHHHHhhcCCceEEE
Q 014134 256 NGDTCAIVYCLERTTCDELSAYLSAG----------------------GISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (430)
Q Consensus 256 ~~~~~~iVf~~s~~~~~~l~~~l~~~----------------------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv 313 (430)
.+++.+||+++++.|..++..+-.. ..+.++=|-+++..+..-+-..|..|.++|+|
T Consensus 1358 -~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v 1436 (1674)
T KOG0951|consen 1358 -NRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCV 1436 (1674)
T ss_pred -CCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEE
Confidence 4678999999999998877644210 11222238999999999999999999999999
Q ss_pred EeccccccccccCceEEE----Eec------CCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCCCC
Q 014134 314 ATVAFGMGIDRKDVRLVC----HFN------IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383 (430)
Q Consensus 314 ~T~~~~~Gidi~~~~~vi----~~~------~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 383 (430)
.... ..|+-...--+|+ .|| .+.+.....|++|++.| .|.|+++....++.++++++...-+.++.
T Consensus 1437 ~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~e~lPves~ 1512 (1674)
T KOG0951|consen 1437 MSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLYEPLPVESH 1512 (1674)
T ss_pred EEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhccCcCchHHH
Confidence 9877 8888776433333 122 24568999999999998 57999999999999999999999999999
Q ss_pred chhhhHHHHHHhhhhccccccceeecCcceeeeeccccccCCCcc
Q 014134 384 SFSTRERWLITVKVLDVAGKRFSRVLGNRYLYHYVKTHAMPANIQ 428 (430)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 428 (430)
+..-+.+-+++....++++++++++++.+|.|.|.+...+|+|..
T Consensus 1513 lq~~lhd~~n~ei~~~tienkqd~vd~lt~s~~yrr~~~np~yy~ 1557 (1674)
T KOG0951|consen 1513 LQHCLHDNFNAEIVTKTIENKQDAVDYLTWSFMYRRLPQNPNYYN 1557 (1674)
T ss_pred HHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccccCcceec
Confidence 999999999999999999999999999999999999999999853
No 115
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.88 E-value=1e-19 Score=188.26 Aligned_cols=184 Identities=13% Similarity=0.083 Sum_probs=116.0
Q ss_pred cEEEEEcCCCch-hHHHHHHHhCCCCCeEEe---ccCC-CCceEEEEE-ecC-----cchhHH----HHHHHHHHhcCCc
Q 014134 195 PILALTATAAPK-VQKDVMESLCLQNPLVLK---SSFN-RPNLFYEVR-YKD-----LLDDAY----ADLCSVLKANGDT 259 (430)
Q Consensus 195 ~~i~~SAT~~~~-~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~-~~~-----~~~~~~----~~l~~~l~~~~~~ 259 (430)
.+|++|||+... ....+...++..+..... ..+. ..+....+. ... ..+... ..+.+++.. .++
T Consensus 597 ~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~g 675 (850)
T TIGR01407 597 SLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TSP 675 (850)
T ss_pred eEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cCC
Confidence 589999999843 345556667765432221 1222 111111111 111 112222 233333333 456
Q ss_pred eEEEEeCccccHHHHHHHHHcCC--CcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCce--EEEEecC
Q 014134 260 CAIVYCLERTTCDELSAYLSAGG--ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR--LVCHFNI 335 (430)
Q Consensus 260 ~~iVf~~s~~~~~~l~~~l~~~~--~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~--~vi~~~~ 335 (430)
+++||++|.+..+.+++.|.... .....+..+.. ..|..+++.|++++..||++|+.+++|||+|+.. +||...+
T Consensus 676 ~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~L 754 (850)
T TIGR01407 676 KILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRL 754 (850)
T ss_pred CEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCC
Confidence 89999999999999999997521 12223333333 5789999999999999999999999999999865 5677776
Q ss_pred CC------------------------------CHHHHHHHhccCCCCCCCceEEEeeCcc--chHHHHHHHHhccCC
Q 014134 336 PK------------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD--DRRRMEFILSKNQSK 380 (430)
Q Consensus 336 p~------------------------------s~~~~~q~~GR~~R~g~~g~~i~~~~~~--~~~~~~~~~~~~~~~ 380 (430)
|. ....+.|.+||.-|.....-++++++.. ...+-+.+.+.+.+.
T Consensus 755 Pf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp~~ 831 (850)
T TIGR01407 755 PFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLPEY 831 (850)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCCCc
Confidence 63 1234589999999987655556666654 445557777777543
No 116
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.88 E-value=1.9e-21 Score=163.50 Aligned_cols=154 Identities=29% Similarity=0.409 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc---C--CCeEEEEcchHHHHHHHHHHHHHcCc----ceeEeCC
Q 014134 40 RDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIALMENQVIGLKEKGI----AGEFLSS 110 (430)
Q Consensus 40 ~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~---~--~~~~lil~Pt~~L~~q~~~~~~~~~~----~~~~~~~ 110 (430)
||+|.++++.+.+++++++.||||+|||+++.+++++ + ..++++++|+++|++|..+.+..++. .......
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 6899999999999999999999999999999988863 2 34999999999999999999988654 3344444
Q ss_pred CchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh--hcCCccEEEEecCccccccCCCcHHHHHHHHHHH
Q 014134 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (430)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~--~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~ 188 (430)
.......... .+ ....++ +|+||+.+..+.... ....+++||+||+|.+.+++ +...+..+....
T Consensus 81 ~~~~~~~~~~--~~-~~~~~i--------lv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~--~~~~~~~i~~~~ 147 (169)
T PF00270_consen 81 GQSISEDQRE--VL-SNQADI--------LVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDET--FRAMLKSILRRL 147 (169)
T ss_dssp TSCHHHHHHH--HH-HTTSSE--------EEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTT--HHHHHHHHHHHS
T ss_pred cccccccccc--cc-cccccc--------cccCcchhhccccccccccccceeeccCccccccccc--HHHHHHHHHHHh
Confidence 3332211111 11 222223 899999888876642 34458999999999998764 565556665555
Q ss_pred hhCCCCcEEEEEcCCCch
Q 014134 189 NYLPDVPILALTATAAPK 206 (430)
Q Consensus 189 ~~~~~~~~i~~SAT~~~~ 206 (430)
...++.+++++|||+++.
T Consensus 148 ~~~~~~~~i~~SAT~~~~ 165 (169)
T PF00270_consen 148 KRFKNIQIILLSATLPSN 165 (169)
T ss_dssp HTTTTSEEEEEESSSTHH
T ss_pred cCCCCCcEEEEeeCCChh
Confidence 555678999999999944
No 117
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.87 E-value=2.8e-20 Score=181.71 Aligned_cols=313 Identities=17% Similarity=0.069 Sum_probs=200.2
Q ss_pred cchHHHHHHHHHHHcC----------CCEEEEcCCCChHHHHh---HHhhhcC--C-----CeEEEEcchHHHHHHHHHH
Q 014134 38 QFRDKQLDAIQAVLSG----------RDCFCLMPTGGGKSMCY---QIPALAK--P-----GIVLVVSPLIALMENQVIG 97 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~----------~~~lv~a~tGsGKT~~~---~~~~l~~--~-----~~~lil~Pt~~L~~q~~~~ 97 (430)
.++|+|++++..+.++ ..+|+.-.+|+|||+.. +...+.+ . .+.|||+|. .|+.-|.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 5899999999998632 35788889999999543 3333433 3 578999998 577889999
Q ss_pred HHHcCcc--eeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCC
Q 014134 98 LKEKGIA--GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (430)
Q Consensus 98 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~ 175 (430)
|.++... ...+...............+... .-..+.+++.+.+.+.+...........++++|+||.|++.+..
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~---~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~~- 392 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFL---GYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNSD- 392 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHh---hhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccchh-
Confidence 9996442 22222222211101111111100 01112333466677766666666677789999999999986643
Q ss_pred CcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCC--------------------------
Q 014134 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR-------------------------- 229 (430)
Q Consensus 176 ~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 229 (430)
..+...+......+.|++|+||-.+...+++..+...+|..+......
T Consensus 393 ------s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~r 466 (776)
T KOG0390|consen 393 ------SLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREER 466 (776)
T ss_pred ------hHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHH
Confidence 334444455556779999999999888888888776666544211000
Q ss_pred ------------------------CceEEEEEecCcch------------------------------------------
Q 014134 230 ------------------------PNLFYEVRYKDLLD------------------------------------------ 243 (430)
Q Consensus 230 ------------------------~~~~~~~~~~~~~~------------------------------------------ 243 (430)
|.....+.......
T Consensus 467 l~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~ 546 (776)
T KOG0390|consen 467 LQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLC 546 (776)
T ss_pred HHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccc
Confidence 00000010000000
Q ss_pred -------------------------------hHHHHHHHHHHhcCCceEEEEe----CccccHHHHHHHHHcCCCcceee
Q 014134 244 -------------------------------DAYADLCSVLKANGDTCAIVYC----LERTTCDELSAYLSAGGISCAAY 288 (430)
Q Consensus 244 -------------------------------~~~~~l~~~l~~~~~~~~iVf~----~s~~~~~~l~~~l~~~~~~~~~~ 288 (430)
.++..|..++.. ...++++|+ |-....+.+.+..+-.|..+..+
T Consensus 547 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~-~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rL 625 (776)
T KOG0390|consen 547 EKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEV-IREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRL 625 (776)
T ss_pred ccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHH-HhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEE
Confidence 122222222211 111233333 33333333444444457889999
Q ss_pred cCCCCHHHHHHHHHHhhcCCc--e-EEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEee
Q 014134 289 HAGLNDKARSSVLDDWISSRK--Q-VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362 (430)
Q Consensus 289 hg~~~~~~r~~~~~~f~~g~~--~-vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~ 362 (430)
||.|+..+|+.+++.|++... . .|.+|-+.+.|+|+-+++.||.+|++|+|+.=.|.++|+-|.|+.-.|++|-
T Consensus 626 dG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYr 702 (776)
T KOG0390|consen 626 DGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYR 702 (776)
T ss_pred cCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEE
Confidence 999999999999999996443 3 5677889999999999999999999999999999999999999999988874
No 118
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.87 E-value=1.6e-20 Score=179.06 Aligned_cols=320 Identities=18% Similarity=0.168 Sum_probs=234.3
Q ss_pred CCccchHHHHHHHHHHH----cCCCEEEEcCCCChHHHHh--HHhhh-c--CCCeEEEEcchHHHHHHHHHHHHHcCcce
Q 014134 35 GHAQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCY--QIPAL-A--KPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (430)
Q Consensus 35 g~~~~~~~Q~~~~~~l~----~~~~~lv~a~tGsGKT~~~--~~~~l-~--~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 105 (430)
|+. +-+||.-++.++. .+-+.|+....|-|||.-. .++.| + ..+.-|||||...|-+ |.+++.++....
T Consensus 397 ~i~-LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleN-WlrEf~kwCPsl 474 (941)
T KOG0389|consen 397 GIQ-LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLEN-WLREFAKWCPSL 474 (941)
T ss_pred CCc-ccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHHH-HHHHHHHhCCce
Confidence 553 8999999999974 3457899999999999432 23333 2 2566899999998865 899999998888
Q ss_pred eEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHH
Q 014134 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (430)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~ 185 (430)
.+....+....+..+...+.......+++++|+.++++..-- ..+....+++++|+||+|.+.+.+. .+..
T Consensus 475 ~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdD---Rsflk~~~~n~viyDEgHmLKN~~S------eRy~ 545 (941)
T KOG0389|consen 475 KVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDD---RSFLKNQKFNYVIYDEGHMLKNRTS------ERYK 545 (941)
T ss_pred EEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHH---HHHHHhccccEEEecchhhhhccch------HHHH
Confidence 888888888888888888888888999999999988765422 2333344578999999999988763 2333
Q ss_pred HHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCC-------------------------------------
Q 014134 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN------------------------------------- 228 (430)
Q Consensus 186 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 228 (430)
.+.. .+.-..+++|+||-.+...+++..+..--|.++.....
T Consensus 546 ~LM~-I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFI 624 (941)
T KOG0389|consen 546 HLMS-INANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFI 624 (941)
T ss_pred Hhcc-ccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHH
Confidence 3322 23556899999988766655555443222211100000
Q ss_pred ------------CC--ceEEEEEec---------------------------Ccch------------------------
Q 014134 229 ------------RP--NLFYEVRYK---------------------------DLLD------------------------ 243 (430)
Q Consensus 229 ------------~~--~~~~~~~~~---------------------------~~~~------------------------ 243 (430)
++ .....+... ....
T Consensus 625 LRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L 704 (941)
T KOG0389|consen 625 LRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKL 704 (941)
T ss_pred HHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHH
Confidence 00 000000000 0000
Q ss_pred --------------------------------------------------------hHHHHHHHHHHhc--CCceEEEEe
Q 014134 244 --------------------------------------------------------DAYADLCSVLKAN--GDTCAIVYC 265 (430)
Q Consensus 244 --------------------------------------------------------~~~~~l~~~l~~~--~~~~~iVf~ 265 (430)
.|+..|..++.+. .+.+++||.
T Consensus 705 ~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFS 784 (941)
T KOG0389|consen 705 RKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFS 784 (941)
T ss_pred HHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEee
Confidence 4555666666542 468999999
Q ss_pred CccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCC-ce-EEEEeccccccccccCceEEEEecCCCCHHHHH
Q 014134 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-KQ-VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFY 343 (430)
Q Consensus 266 ~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~-~~-vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~ 343 (430)
.--...+-+...|.-.++....+.|.+.-.+|+.+++.|...+ +. .|++|.+.+.|||+..+++||.+|...+|-+=.
T Consensus 785 QFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~ 864 (941)
T KOG0389|consen 785 QFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDK 864 (941)
T ss_pred HHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccc
Confidence 9888999999999999999999999999999999999998654 33 689999999999999999999999999999999
Q ss_pred HHhccCCCCCCCceEEEe--eCccc
Q 014134 344 QESGRAGRDQLPSKSLLY--YGMDD 366 (430)
Q Consensus 344 q~~GR~~R~g~~g~~i~~--~~~~~ 366 (430)
|.-.||+|.|+...+.++ ++.+-
T Consensus 865 QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 865 QAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred hhHHHHHhhCCcceeEEEEEEecCc
Confidence 999999999997766654 55553
No 119
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=1.9e-20 Score=186.04 Aligned_cols=123 Identities=24% Similarity=0.275 Sum_probs=110.8
Q ss_pred hhHHHHHHHHHHhc--CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccc
Q 014134 243 DDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (430)
Q Consensus 243 ~~~~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 320 (430)
..|+..+.+.+... .+.++||||+|++.++.++..|.+.+++...+|+ .+.+|+..+..|+.+...|+|||++++|
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 46888888888553 6789999999999999999999999999999997 6889999999999999999999999999
Q ss_pred ccccc---Cce-----EEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccch
Q 014134 321 GIDRK---DVR-----LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (430)
Q Consensus 321 Gidi~---~~~-----~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~ 367 (430)
|+||+ .|. +||....|.|...|.|++||+||.|.+|.+.+|++.+|.
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 99999 443 348888999999999999999999999999999988753
No 120
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.86 E-value=2.7e-20 Score=185.09 Aligned_cols=315 Identities=20% Similarity=0.216 Sum_probs=219.2
Q ss_pred ccchHHHHHHHHHHH----cCCCEEEEcCCCChHHH---HhHHhhh---cCCCeEEEEcchHHHHHHHHHHHHHc-Ccce
Q 014134 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSM---CYQIPAL---AKPGIVLVVSPLIALMENQVIGLKEK-GIAG 105 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~----~~~~~lv~a~tGsGKT~---~~~~~~l---~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~ 105 (430)
.+++.||.+++.+++ +++++|+....|-|||+ +|+-.+. ...+..|+|+|...+.. |.++|... ...+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~-W~~ef~~w~~mn~ 447 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITA-WEREFETWTDMNV 447 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHH-HHHHHHHHhhhce
Confidence 579999999999987 57899999999999993 4444443 33577999999988766 56666553 3334
Q ss_pred eEeCCCchHHHHHHHHhhhhcCC---CceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHH
Q 014134 106 EFLSSTQTMQVKTKIYEDLDSGK---PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182 (430)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~ 182 (430)
.++.+..........++-..... ..+++ +++|...+..-......-.+.++++||||++.+.. .
T Consensus 448 i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~------lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~-------~ 514 (1373)
T KOG0384|consen 448 IVYHGNLESRQLIRQYEFYHSSNTKKLKFNA------LLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDE-------S 514 (1373)
T ss_pred eeeecchhHHHHHHHHHheecCCccccccce------eehhhHHHhccHhhhccCCcceeeecHHhhcCchH-------H
Confidence 44444444433333333332221 13444 56666644444444455568899999999997644 3
Q ss_pred HHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEecc------C-----------------------------
Q 014134 183 KLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------F----------------------------- 227 (430)
Q Consensus 183 ~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~------~----------------------------- 227 (430)
.+...+..+.-...+++|+||-.+...+++..+....|..+... +
T Consensus 515 ~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvek 594 (1373)
T KOG0384|consen 515 KLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEK 594 (1373)
T ss_pred HHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhcc
Confidence 44444555666679999999999888888877765554432110 0
Q ss_pred ---CCCceEEEEEecCcch--------------------------------------------------hHH------HH
Q 014134 228 ---NRPNLFYEVRYKDLLD--------------------------------------------------DAY------AD 248 (430)
Q Consensus 228 ---~~~~~~~~~~~~~~~~--------------------------------------------------~~~------~~ 248 (430)
........+...+... ... ..
T Consensus 595 slp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~ 674 (1373)
T KOG0384|consen 595 SLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEA 674 (1373)
T ss_pred CCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHH
Confidence 0000001110000000 011 12
Q ss_pred HHHHHHh---------------cCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcC---Cce
Q 014134 249 LCSVLKA---------------NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS---RKQ 310 (430)
Q Consensus 249 l~~~l~~---------------~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g---~~~ 310 (430)
+..++.. ..+.++|||..-+...+-|+++|..++++...+.|.+..+.|+..++.|..- ...
T Consensus 675 L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFv 754 (1373)
T KOG0384|consen 675 LQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFV 754 (1373)
T ss_pred HHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceE
Confidence 2222221 1578999999999999999999999999999999999999999999999954 456
Q ss_pred EEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEe--eCcc
Q 014134 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY--YGMD 365 (430)
Q Consensus 311 vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~--~~~~ 365 (430)
.|+||.+.+-|||+-.+|.||+||..|+|++=+|...||+|.|+...+-+| ++.+
T Consensus 755 FLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 755 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred EEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 899999999999999999999999999999999999999999998876665 5544
No 121
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=2.9e-21 Score=175.32 Aligned_cols=306 Identities=16% Similarity=0.130 Sum_probs=197.5
Q ss_pred CccchHHHHHHHHHHHcC---CCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCcc----eeEe
Q 014134 36 HAQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA----GEFL 108 (430)
Q Consensus 36 ~~~~~~~Q~~~~~~l~~~---~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~~----~~~~ 108 (430)
-..++|+|.+++..+..+ ++.++..|+|+|||++.+.++..-+.++|+||.+..-++||...+..+..- +...
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rF 379 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRF 379 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecccEEEEecCccCHHHHHHHHHhhcccCccceEEe
Confidence 357999999999999854 689999999999999998888877889999999999999999998875211 1111
Q ss_pred CCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhH----HHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHH
Q 014134 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF----MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL 184 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~----~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l 184 (430)
++ +.-........+++++.-+|+..+. -...++......|+++++||+|.+-..- |+.++..+
T Consensus 380 Ts-----------d~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~M--FRRVlsiv 446 (776)
T KOG1123|consen 380 TS-----------DAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKM--FRRVLSIV 446 (776)
T ss_pred ec-----------cccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHH--HHHHHHHH
Confidence 11 1112233345677777777765442 2234566667779999999999975532 33332222
Q ss_pred HHHHhhCCCCcEEEEEcCCCchhHHHHHHHhC-CCCCeEEeccC---------------------------------CCC
Q 014134 185 SSLRNYLPDVPILALTATAAPKVQKDVMESLC-LQNPLVLKSSF---------------------------------NRP 230 (430)
Q Consensus 185 ~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~---------------------------------~~~ 230 (430)
. ..-.+++|||+-.+..+ ...+. +..|..+..+. .+.
T Consensus 447 ~-------aHcKLGLTATLvREDdK--I~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~k 517 (776)
T KOG1123|consen 447 Q-------AHCKLGLTATLVREDDK--ITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRK 517 (776)
T ss_pred H-------HHhhccceeEEeecccc--ccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhh
Confidence 2 12267999998765322 11110 01111111000 000
Q ss_pred ceEEEEEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhc-CCc
Q 014134 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS-SRK 309 (430)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~-g~~ 309 (430)
. .......+.....+..|...-.. .+.++|||..+.-.....+-.| +--+++|..++.+|.++++.|+- .++
T Consensus 518 r-~lLyvMNP~KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl-----~KpfIYG~Tsq~ERm~ILqnFq~n~~v 590 (776)
T KOG1123|consen 518 R-MLLYVMNPNKFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQNERMKILQNFQTNPKV 590 (776)
T ss_pred h-heeeecCcchhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHc-----CCceEECCCchhHHHHHHHhcccCCcc
Confidence 0 01111111112333334433333 6779999997766555555444 23568999999999999999995 568
Q ss_pred eEEEEeccccccccccCceEEEEecCC-CCHHHHHHHhccCCCCCC---Cc---eEEEeeCccchHHH
Q 014134 310 QVVVATVAFGMGIDRKDVRLVCHFNIP-KSMEAFYQESGRAGRDQL---PS---KSLLYYGMDDRRRM 370 (430)
Q Consensus 310 ~vLv~T~~~~~Gidi~~~~~vi~~~~p-~s~~~~~q~~GR~~R~g~---~g---~~i~~~~~~~~~~~ 370 (430)
+.++.+.+....+|+|.++++|+.+.- .|-.+=.||.||.-|+.+ .+ ..+.+++.+-.+++
T Consensus 591 NTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 591 NTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred ceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 889999999999999999999987764 477888999999988643 22 34445555544433
No 122
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.85 E-value=8.2e-21 Score=183.26 Aligned_cols=287 Identities=19% Similarity=0.198 Sum_probs=179.9
Q ss_pred ccchHHHHHHHHHHH----cC-CCEEEEcCCCChHHHHhHH--hhh---cCCCeEEEEcchHHHHHHHHHHHHHcCccee
Q 014134 37 AQFRDKQLDAIQAVL----SG-RDCFCLMPTGGGKSMCYQI--PAL---AKPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~----~~-~~~lv~a~tGsGKT~~~~~--~~l---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 106 (430)
..+|.+|..|+..+. +| +.+++++.||||||.+++- ..| ....++|+|+-+++|+.|.+..+..+.....
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~ 243 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGT 243 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCcc
Confidence 469999999988765 34 4699999999999966542 223 3367999999999999999988888643322
Q ss_pred EeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHH-------hhhcCCccEEEEecCccccccCCCcHH
Q 014134 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-------IHSRGLLNLVAIDEAHCISSWGHDFRP 179 (430)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~-------~~~~~~~~~lViDE~h~~~~~~~~~~~ 179 (430)
........ ....+.++ .++|...+..... ....+.+++||+||||+-..
T Consensus 244 ~~n~i~~~-----------~~~~s~~i------~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~------- 299 (875)
T COG4096 244 KMNKIEDK-----------KGDTSSEI------YLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIY------- 299 (875)
T ss_pred ceeeeecc-----------cCCcceeE------EEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHH-------
Confidence 21111100 00112333 5666554333322 22344489999999999432
Q ss_pred HHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhC-CC------------------CCeEEeccCCCCceEEEEE---
Q 014134 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLC-LQ------------------NPLVLKSSFNRPNLFYEVR--- 237 (430)
Q Consensus 180 ~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~------------------~~~~~~~~~~~~~~~~~~~--- 237 (430)
+....+..++... .+++||||.......-..++. .+ ..+.+........+...-.
T Consensus 300 --~~~~~I~dYFdA~-~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~ser 376 (875)
T COG4096 300 --SEWSSILDYFDAA-TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSER 376 (875)
T ss_pred --hhhHHHHHHHHHH-HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchh
Confidence 3344555665444 445599998744333333331 11 1111111111111100000
Q ss_pred -------------------------ecCcchhHHHHHHHHHHh--cC--CceEEEEeCccccHHHHHHHHHcCC-----C
Q 014134 238 -------------------------YKDLLDDAYADLCSVLKA--NG--DTCAIVYCLERTTCDELSAYLSAGG-----I 283 (430)
Q Consensus 238 -------------------------~~~~~~~~~~~l~~~l~~--~~--~~~~iVf~~s~~~~~~l~~~l~~~~-----~ 283 (430)
...........+.+.++. .+ .+|+||||.+..+|+.+.+.|.+.. -
T Consensus 377 ek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~ 456 (875)
T COG4096 377 EKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGR 456 (875)
T ss_pred hhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCc
Confidence 000011233455566655 32 4689999999999999999998652 2
Q ss_pred cceeecCCCCHHHHHHHHHHhhc--CCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCC
Q 014134 284 SCAAYHAGLNDKARSSVLDDWIS--SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (430)
Q Consensus 284 ~~~~~hg~~~~~~r~~~~~~f~~--g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~ 352 (430)
-+..+.|+-.+. +..++.|.. .-.+|.|+.+++.+|+|+|.|-.++++..-.|...|.||+||.-|.
T Consensus 457 ~a~~IT~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 457 YAMKITGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred eEEEEeccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 355677765433 344566654 3356899999999999999999999999999999999999999984
No 123
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=6.4e-20 Score=171.73 Aligned_cols=307 Identities=17% Similarity=0.158 Sum_probs=206.1
Q ss_pred cchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh----cC-CCeEEEEcchHHHHHHHHHHHHH-cCcceeEeCCC
Q 014134 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AK-PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSST 111 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l----~~-~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~ 111 (430)
...++-.+.+.++..++-+++.|.||||||.-.=-.+. .+ +.++=+.-|.|.-|..++.+..+ +|.......+.
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGY 344 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGY 344 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccce
Confidence 34556667788888889999999999999964321122 22 44477888999888877765443 44333211111
Q ss_pred chHHHHHHHHhhhhcCCCceeEEEECCccccChhHHH-HHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhh
Q 014134 112 QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS-KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 190 (430)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~-~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~ 190 (430)
... +++..+.. |.+-..|.+.+. .++.-..+...+++|+||||. +.-+..-++..+..+...
T Consensus 345 sIR------FEdcTSek--------TvlKYMTDGmLlREfL~epdLasYSViiiDEAHE---RTL~TDILfgLvKDIar~ 407 (902)
T KOG0923|consen 345 SIR------FEDCTSEK--------TVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHE---RTLHTDILFGLVKDIARF 407 (902)
T ss_pred EEE------eccccCcc--------eeeeeecchhHHHHHhccccccceeEEEeehhhh---hhhhhhHHHHHHHHHHhh
Confidence 100 01111111 111567877544 356666778899999999998 443344555667788888
Q ss_pred CCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEec-CcchhHHHHHHHHHHhcCCceEEEEeCccc
Q 014134 191 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK-DLLDDAYADLCSVLKANGDTCAIVYCLERT 269 (430)
Q Consensus 191 ~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~ 269 (430)
.|..++++.|||+.-+-+. .++.......+.....+..+++..... +-.+..+..+..+....+.+-+|||....+
T Consensus 408 RpdLKllIsSAT~DAekFS---~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQe 484 (902)
T KOG0923|consen 408 RPDLKLLISSATMDAEKFS---AFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQE 484 (902)
T ss_pred CCcceEEeeccccCHHHHH---HhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHH
Confidence 8999999999999876433 333322222333333333333332222 112233333344434456788999999998
Q ss_pred cHHHHHHHHHcC---------CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecC-----
Q 014134 270 TCDELSAYLSAG---------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI----- 335 (430)
Q Consensus 270 ~~~~l~~~l~~~---------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~----- 335 (430)
+.+...+.|.+. .+-++.+|+.+|...+.++++---.|..+|++||++++..+.|+++.+||.-++
T Consensus 485 EIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~ns 564 (902)
T KOG0923|consen 485 EIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNS 564 (902)
T ss_pred HHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccC
Confidence 888777777642 234678999999999999988877899999999999999999999999995443
Q ss_pred -------------CCCHHHHHHHhccCCCCCCCceEEEeeCcc
Q 014134 336 -------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (430)
Q Consensus 336 -------------p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~ 365 (430)
|.|.++-.||.||+||.| +|.|+-+++.-
T Consensus 565 ynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 565 YNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred cCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 568889999999999985 89999998853
No 124
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=5.4e-20 Score=172.65 Aligned_cols=306 Identities=13% Similarity=0.137 Sum_probs=202.4
Q ss_pred chHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc----CCCeEEEEcchHHHHHHHHHHHHH-cCcceeEeCCCch
Q 014134 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQT 113 (430)
Q Consensus 39 ~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~----~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~ 113 (430)
....+.+.+..+..++-+++.+.||||||.-..-.+++ .++.+-+.-|.|.-|-.++++... ++....-..+...
T Consensus 357 vf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsI 436 (1042)
T KOG0924|consen 357 VFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSI 436 (1042)
T ss_pred hHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEE
Confidence 44566777777778888999999999999765554443 355666777999888888777654 4322211111000
Q ss_pred HHHHHHHHhhhhcCCCceeEEEECCccccChhHH-HHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCC
Q 014134 114 MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP 192 (430)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~-~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~ 192 (430)
-.++.......+ -..|.+.+ ...+....+..+++||+||||. +.-+..-++-.+........
T Consensus 437 ------RFEdvT~~~T~I--------kymTDGiLLrEsL~d~~L~kYSviImDEAHE---RslNtDilfGllk~~larRr 499 (1042)
T KOG0924|consen 437 ------RFEDVTSEDTKI--------KYMTDGILLRESLKDRDLDKYSVIIMDEAHE---RSLNTDILFGLLKKVLARRR 499 (1042)
T ss_pred ------EeeecCCCceeE--------EEeccchHHHHHhhhhhhhheeEEEechhhh---cccchHHHHHHHHHHHHhhc
Confidence 011111111111 45666643 3345566677789999999998 33334445555666666666
Q ss_pred CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecC-cchhHHHHHHHHHHhcCCceEEEEeCccccH
Q 014134 193 DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD-LLDDAYADLCSVLKANGDTCAIVYCLERTTC 271 (430)
Q Consensus 193 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~ 271 (430)
+.++|..|||+.-. .+.++++.-....+.+...+..+.+.-...+ -.+......+.+-...+.+.+|||...++..
T Consensus 500 dlKliVtSATm~a~---kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqedi 576 (1042)
T KOG0924|consen 500 DLKLIVTSATMDAQ---KFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDI 576 (1042)
T ss_pred cceEEEeeccccHH---HHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcch
Confidence 88999999998764 4455665333333444333333333222221 1112222222222233557899999988877
Q ss_pred HHHHHHHHc----------CCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecC------
Q 014134 272 DELSAYLSA----------GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI------ 335 (430)
Q Consensus 272 ~~l~~~l~~----------~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~------ 335 (430)
+-.+..++. .++.+..+++.++..-..++++.-..|..+++|||.+++..+.+|++.+||..++
T Consensus 577 E~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvy 656 (1042)
T KOG0924|consen 577 ECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVY 656 (1042)
T ss_pred hHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeec
Confidence 666655543 1567889999999999999988888888999999999999999999999996554
Q ss_pred ------------CCCHHHHHHHhccCCCCCCCceEEEeeCcc
Q 014134 336 ------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (430)
Q Consensus 336 ------------p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~ 365 (430)
|-|-.+--||.||+||.| +|.|+-+++.+
T Consensus 657 n~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 657 NPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred ccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 557888899999999984 89999998874
No 125
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.83 E-value=1.2e-17 Score=170.53 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=87.2
Q ss_pred CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccC--ceEEEEec
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD--VRLVCHFN 334 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~--~~~vi~~~ 334 (430)
.+++++|+++|.+..+.+++.|......+ ...|... .|..++++|++++..||++|+...+|||+|+ ...||...
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~k 722 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITR 722 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEec
Confidence 46789999999999999999997654444 4444222 3566899999988899999999999999974 45566666
Q ss_pred CCC------------------------------CHHHHHHHhccCCCCCCCceEEEeeCcc--chHHHHHHHHhccC
Q 014134 335 IPK------------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD--DRRRMEFILSKNQS 379 (430)
Q Consensus 335 ~p~------------------------------s~~~~~q~~GR~~R~g~~g~~i~~~~~~--~~~~~~~~~~~~~~ 379 (430)
+|- -.-.+.|-+||.-|...+--++++++.. ...+-+.+++.+-.
T Consensus 723 LPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg~~~l~sLP~ 799 (820)
T PRK07246 723 LPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSYGKQILASLAE 799 (820)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHHHHHHHHhCCC
Confidence 652 1235689999999987643355555554 45566777777754
No 126
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=2.2e-17 Score=160.02 Aligned_cols=317 Identities=19% Similarity=0.172 Sum_probs=202.7
Q ss_pred HhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh---cCCCeEEEEcchHHHHHHHHHHHHH----cCcc
Q 014134 32 WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE----KGIA 104 (430)
Q Consensus 32 ~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt~~L~~q~~~~~~~----~~~~ 104 (430)
+.+|+ .|++.|.-+.-.++.| -+..+.||.|||+++.+|+. ..+..+.+++|+..||.|-++++.. +|+.
T Consensus 73 R~lg~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLs 149 (764)
T PRK12326 73 RTLGL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLT 149 (764)
T ss_pred HHcCC-CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCE
Confidence 44465 3788888887777765 47899999999999988875 3578899999999999998888766 5788
Q ss_pred eeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHH---HhhhcCCccEEEEecCccccc---------
Q 014134 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS--------- 172 (430)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~---~~~~~~~~~~lViDE~h~~~~--------- 172 (430)
+...........+...+. ++|.+++.--++-.-.-.++. .......+.+.|+||+|.++=
T Consensus 150 vg~i~~~~~~~err~aY~--------~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiI 221 (764)
T PRK12326 150 VGWITEESTPEERRAAYA--------CDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVL 221 (764)
T ss_pred EEEECCCCCHHHHHHHHc--------CCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceee
Confidence 877766655554444432 455554443222211111121 111234477899999997631
Q ss_pred cCCC--c-----------------------------------------------------HHHHHHHHHHHh-h--C---
Q 014134 173 WGHD--F-----------------------------------------------------RPSYRKLSSLRN-Y--L--- 191 (430)
Q Consensus 173 ~~~~--~-----------------------------------------------------~~~~~~l~~~~~-~--~--- 191 (430)
.|+. . ...+..+...+. . +
T Consensus 222 Sg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d 301 (764)
T PRK12326 222 AGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRD 301 (764)
T ss_pred eCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcC
Confidence 0000 0 000000000000 0 0
Q ss_pred ----------------------------------------------------------C-CCcEEEEEcCCCchhHHHHH
Q 014134 192 ----------------------------------------------------------P-DVPILALTATAAPKVQKDVM 212 (430)
Q Consensus 192 ----------------------------------------------------------~-~~~~i~~SAT~~~~~~~~~~ 212 (430)
. -.++.+||+|..... .++.
T Consensus 302 ~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~-~Ef~ 380 (764)
T PRK12326 302 VHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAG-EQLR 380 (764)
T ss_pred CcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHH-HHHH
Confidence 0 114777888875443 3334
Q ss_pred HHhCCCCCeEEeccCCCCceEEEE--EecCcchhHHHHHHHHHHh--cCCceEEEEeCccccHHHHHHHHHcCCCcceee
Q 014134 213 ESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAY 288 (430)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~ 288 (430)
..++.. ++....+.+.+.... ........++..+.+.+.+ ..+.|+||.|.|++.++.+...|.+.|++...+
T Consensus 381 ~iY~l~---Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vL 457 (764)
T PRK12326 381 QFYDLG---VSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVL 457 (764)
T ss_pred HHhCCc---EEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceee
Confidence 333322 223333344332221 1222235677777666654 368899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhcCC-ceEEEEeccccccccccC---------------ceEEEEecCCCCHHHHHHHhccCCCC
Q 014134 289 HAGLNDKARSSVLDDWISSR-KQVVVATVAFGMGIDRKD---------------VRLVCHFNIPKSMEAFYQESGRAGRD 352 (430)
Q Consensus 289 hg~~~~~~r~~~~~~f~~g~-~~vLv~T~~~~~Gidi~~---------------~~~vi~~~~p~s~~~~~q~~GR~~R~ 352 (430)
+.+-...+- .++. ..|+ -.|.|||++++||.||.= ==+||-...+.|..-=-|..||+||.
T Consensus 458 NAk~~~~EA-~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQ 534 (764)
T PRK12326 458 NAKNDAEEA-RIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQ 534 (764)
T ss_pred ccCchHhHH-HHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccC
Confidence 987443332 2222 2344 358999999999999862 22688888899999999999999999
Q ss_pred CCCceEEEeeCccc
Q 014134 353 QLPSKSLLYYGMDD 366 (430)
Q Consensus 353 g~~g~~i~~~~~~~ 366 (430)
|.+|.+-+|++-+|
T Consensus 535 GDpGss~f~lSleD 548 (764)
T PRK12326 535 GDPGSSVFFVSLED 548 (764)
T ss_pred CCCCceeEEEEcch
Confidence 99999999987765
No 127
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.81 E-value=4.3e-19 Score=142.42 Aligned_cols=118 Identities=30% Similarity=0.477 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHhc--CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecccccc
Q 014134 244 DAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (430)
Q Consensus 244 ~~~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~G 321 (430)
.+...+..++.+. .++++||||++...++.+++.|.+.+.++..+||++++.+|..+.+.|+++...+|++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 6777777777765 37799999999999999999999888999999999999999999999999999999999999999
Q ss_pred ccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEe
Q 014134 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (430)
Q Consensus 322 idi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~ 361 (430)
+|+|.+++||++++|++...+.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998888764
No 128
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.81 E-value=2.8e-18 Score=170.46 Aligned_cols=307 Identities=14% Similarity=0.110 Sum_probs=208.5
Q ss_pred cchHHHHHHHHHHH--c--CCCEEEEcCCCChHHHHhHHhhh----cC--------CCeEEEEcchHHHHHHHHHHHHHc
Q 014134 38 QFRDKQLDAIQAVL--S--GRDCFCLMPTGGGKSMCYQIPAL----AK--------PGIVLVVSPLIALMENQVIGLKEK 101 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~--~--~~~~lv~a~tGsGKT~~~~~~~l----~~--------~~~~lil~Pt~~L~~q~~~~~~~~ 101 (430)
++|.||++++.++. + +-+.|+|...|-|||+-.+..+. ++ ....|||||. .|+..|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 58999999999974 2 35899999999999987654443 11 2348999998 5889999999997
Q ss_pred CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHH
Q 014134 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY 181 (430)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~ 181 (430)
.....+....+....+........ +.++ +|++++.+.+-........|.+.|+||-|.+.+..
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q~~----~~~i------iVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~k------- 1116 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQYK----NANI------IVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSK------- 1116 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhhcc----ccce------EEeeHHHHHHHHHHHHhcccceEEecCcceecchH-------
Confidence 554433333333333333322221 1233 56666655544444445558899999999987632
Q ss_pred HHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEecc------CC---------------------------
Q 014134 182 RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------FN--------------------------- 228 (430)
Q Consensus 182 ~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~------~~--------------------------- 228 (430)
..+....+++..-..+.+|+||-.+...+++..+...-|.++..+ +.
T Consensus 1117 tkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLH 1196 (1549)
T KOG0392|consen 1117 TKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALH 1196 (1549)
T ss_pred HHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHH
Confidence 333334444444568999999987766666655543333222110 00
Q ss_pred -------------------CCceEEEEEe---------------------------------------------------
Q 014134 229 -------------------RPNLFYEVRY--------------------------------------------------- 238 (430)
Q Consensus 229 -------------------~~~~~~~~~~--------------------------------------------------- 238 (430)
++.+...+..
T Consensus 1197 KqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcn 1276 (1549)
T KOG0392|consen 1197 KQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCN 1276 (1549)
T ss_pred HHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcC
Confidence 0000000000
Q ss_pred ------cC----------------------cchhHHHHHHHHHHhc----------------CCceEEEEeCccccHHHH
Q 014134 239 ------KD----------------------LLDDAYADLCSVLKAN----------------GDTCAIVYCLERTTCDEL 274 (430)
Q Consensus 239 ------~~----------------------~~~~~~~~l~~~l~~~----------------~~~~~iVf~~s~~~~~~l 274 (430)
.+ ....|+..|.+++.+. .+.+++|||.-+...+-+
T Consensus 1277 HpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlV 1356 (1549)
T KOG0392|consen 1277 HPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLV 1356 (1549)
T ss_pred CcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHH
Confidence 00 0004566677776553 345899999999999999
Q ss_pred HHHHHcCCC-cc--eeecCCCCHHHHHHHHHHhhcC-CceEE-EEeccccccccccCceEEEEecCCCCHHHHHHHhccC
Q 014134 275 SAYLSAGGI-SC--AAYHAGLNDKARSSVLDDWISS-RKQVV-VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 349 (430)
Q Consensus 275 ~~~l~~~~~-~~--~~~hg~~~~~~r~~~~~~f~~g-~~~vL-v~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~ 349 (430)
.+-|-+... .+ ..+.|..++.+|.++.++|+++ .++|| ++|.+.+-|+|+.++|.||+++=.|+|-.=.|.+.||
T Consensus 1357 ekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRA 1436 (1549)
T KOG0392|consen 1357 EKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRA 1436 (1549)
T ss_pred HHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHH
Confidence 888766533 33 4789999999999999999998 67765 6689999999999999999999999999999999999
Q ss_pred CCCCCCceEEEee
Q 014134 350 GRDQLPSKSLLYY 362 (430)
Q Consensus 350 ~R~g~~g~~i~~~ 362 (430)
+|-|+.-.+-++-
T Consensus 1437 HRIGQKrvVNVyR 1449 (1549)
T KOG0392|consen 1437 HRIGQKRVVNVYR 1449 (1549)
T ss_pred HhhcCceeeeeee
Confidence 9999988776663
No 129
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.80 E-value=3.4e-18 Score=170.15 Aligned_cols=305 Identities=16% Similarity=0.127 Sum_probs=198.3
Q ss_pred chHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc------CCCeEEEEcchHHHHHHHHHHHHH-cCcceeEeCCC
Q 014134 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSST 111 (430)
Q Consensus 39 ~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~------~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~ 111 (430)
....+.+.+..+.++.-++++|.||+|||.-.--.+++ ...++++--|.|--|-.++++... .+.......+.
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGY 253 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGY 253 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeE
Confidence 45567788888889999999999999999765444443 245678888998666666665544 22111111010
Q ss_pred chHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHH-HHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhh
Q 014134 112 QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 190 (430)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~-~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~ 190 (430)
+. + . ..... ..+..+.+|.+.+.+. .....+..+..+|+||+|. ++.+-.-.+-.++.+...
T Consensus 254 qv---r--l-~~~~s--------~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHE---R~i~~DflLi~lk~lL~~ 316 (924)
T KOG0920|consen 254 QV---R--L-ESKRS--------RETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHE---RSINTDFLLILLKDLLPR 316 (924)
T ss_pred EE---e--e-ecccC--------CceeEEEecHHHHHHHhccCcccccCceeeeeeEEE---ccCCcccHHHHHHHHhhh
Confidence 00 0 0 00000 0122277887755554 4455567788999999998 332233344556667777
Q ss_pred CCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCC--------------------ceE------------EEEEe
Q 014134 191 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP--------------------NLF------------YEVRY 238 (430)
Q Consensus 191 ~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~------------~~~~~ 238 (430)
.|+.++|+||||+..+.+ ..+++ ..+++...+..-+ ... .....
T Consensus 317 ~p~LkvILMSAT~dae~f---s~YF~-~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (924)
T KOG0920|consen 317 NPDLKVILMSATLDAELF---SDYFG-GCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWE 392 (924)
T ss_pred CCCceEEEeeeecchHHH---HHHhC-CCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhcc
Confidence 799999999999985443 34444 2222211110000 000 00000
Q ss_pred cCcchhHHHHHHHHHHhc-CCceEEEEeCccccHHHHHHHHHcC-------CCcceeecCCCCHHHHHHHHHHhhcCCce
Q 014134 239 KDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAG-------GISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (430)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~-~~~~~iVf~~s~~~~~~l~~~l~~~-------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~ 310 (430)
.+.....+..+...+... ..+.+|||.+....+..+.+.|... ..-+..+|+.|+..+...+...--.|..+
T Consensus 393 ~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RK 472 (924)
T KOG0920|consen 393 PEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRK 472 (924)
T ss_pred ccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcch
Confidence 011122333333333333 4678999999999999999999752 24467899999999999999988899999
Q ss_pred EEEEeccccccccccCceEEEEecC--------C----------CCHHHHHHHhccCCCCCCCceEEEeeCcc
Q 014134 311 VVVATVAFGMGIDRKDVRLVCHFNI--------P----------KSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (430)
Q Consensus 311 vLv~T~~~~~Gidi~~~~~vi~~~~--------p----------~s~~~~~q~~GR~~R~g~~g~~i~~~~~~ 365 (430)
|+++|.+++.+|.|+++-+||..+. - -|..+-.||.||+||. ..|.|+-+++..
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechh
Confidence 9999999999999999999995443 2 2566779999999998 789999998764
No 130
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.79 E-value=1.9e-17 Score=150.47 Aligned_cols=324 Identities=15% Similarity=0.138 Sum_probs=206.6
Q ss_pred ccchHHHHHHHHHHH-cCCCEEEEcCCCChHHHHhHHhh--hcCCCeEEEEcchHHHHHHHHHHHHHcCcceeE-eCCCc
Q 014134 37 AQFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQIPA--LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEF-LSSTQ 112 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~-~~~~~lv~a~tGsGKT~~~~~~~--l~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~-~~~~~ 112 (430)
..+-|+|.+.+...+ +|..+++....|-|||+-++..+ ....-..|||||..-. ..|.+.+..+...... .....
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwplliVcPAsvr-ftWa~al~r~lps~~pi~vv~~ 275 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWPLLIVCPASVR-FTWAKALNRFLPSIHPIFVVDK 275 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCcEEEEecHHHh-HHHHHHHHHhcccccceEEEec
Confidence 358899999988866 56789999999999998765333 2446678999998644 4578888775322111 00000
Q ss_pred hHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCC
Q 014134 113 TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP 192 (430)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~ 192 (430)
.. .+..++--...+.|.+.+.+..+.+...-..+.+||+||+|.+.+....- ......+...
T Consensus 276 ~~-------------D~~~~~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr---~Ka~~dllk~-- 337 (689)
T KOG1000|consen 276 SS-------------DPLPDVCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKR---TKAATDLLKV-- 337 (689)
T ss_pred cc-------------CCccccccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhh---hhhhhhHHHH--
Confidence 00 00000101111256667777777777777779999999999997633211 1111222221
Q ss_pred CCcEEEEEcCCCchhHHHHHHH------------------hCCCCCeEEeccCC--------------------------
Q 014134 193 DVPILALTATAAPKVQKDVMES------------------LCLQNPLVLKSSFN-------------------------- 228 (430)
Q Consensus 193 ~~~~i~~SAT~~~~~~~~~~~~------------------~~~~~~~~~~~~~~-------------------------- 228 (430)
-.++|++|+||.-..-.++... ++......+..++.
T Consensus 338 akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL 417 (689)
T KOG1000|consen 338 AKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVL 417 (689)
T ss_pred hhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2359999999753211111111 11100000000000
Q ss_pred ---CCceEEEEEe--cCcc-----------------------------------hhHHHHHHHHHHh------cCCceEE
Q 014134 229 ---RPNLFYEVRY--KDLL-----------------------------------DDAYADLCSVLKA------NGDTCAI 262 (430)
Q Consensus 229 ---~~~~~~~~~~--~~~~-----------------------------------~~~~~~l~~~l~~------~~~~~~i 262 (430)
++. ...+.. .... ..|...+.+.+.. .++.|.+
T Consensus 418 ~qLPpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~Kfl 496 (689)
T KOG1000|consen 418 KQLPPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFL 496 (689)
T ss_pred hhCCcc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEE
Confidence 000 011100 0000 0233444554444 2677999
Q ss_pred EEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcC-CceE-EEEeccccccccccCceEEEEecCCCCHH
Q 014134 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQV-VVATVAFGMGIDRKDVRLVCHFNIPKSME 340 (430)
Q Consensus 263 Vf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g-~~~v-Lv~T~~~~~Gidi~~~~~vi~~~~p~s~~ 340 (430)
|||......+.+...+.+++++.+.+.|..+..+|+...+.|... +++| +++..+++.|+++...+.|++..++|++.
T Consensus 497 VFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPg 576 (689)
T KOG1000|consen 497 VFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPG 576 (689)
T ss_pred EEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCc
Confidence 999999999999999999999999999999999999999999954 4554 56677889999999999999999999999
Q ss_pred HHHHHhccCCCCCCCceEEEee--Cc--cchHHHHHHHHhccCC
Q 014134 341 AFYQESGRAGRDQLPSKSLLYY--GM--DDRRRMEFILSKNQSK 380 (430)
Q Consensus 341 ~~~q~~GR~~R~g~~g~~i~~~--~~--~~~~~~~~~~~~~~~~ 380 (430)
.++|.-.|++|.|+...+.+++ .. .|...|..+.+++...
T Consensus 577 vLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl 620 (689)
T KOG1000|consen 577 VLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVL 620 (689)
T ss_pred eEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHH
Confidence 9999999999999876554443 33 2667777777766443
No 131
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=2.2e-18 Score=159.01 Aligned_cols=337 Identities=15% Similarity=0.110 Sum_probs=216.0
Q ss_pred hHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh-----cCCCeEEEEcchHHHHHHHHH
Q 014134 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL-----AKPGIVLVVSPLIALMENQVI 96 (430)
Q Consensus 22 ~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l-----~~~~~~lil~Pt~~L~~q~~~ 96 (430)
+.=++.+.+...+-.+....+|.+++..+.+|++.++.-.|.+||.+++..... ......++..|++++++...+
T Consensus 270 ~~~E~~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~ 349 (1034)
T KOG4150|consen 270 DFWESIRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSK 349 (1034)
T ss_pred hHHHHHHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCC
Confidence 334555666655566788899999999999999999999999999998876543 345678999999999886433
Q ss_pred HHHHc------CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccc
Q 014134 97 GLKEK------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (430)
Q Consensus 97 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~ 170 (430)
.+.-. .....+...+.........+. ....+++++.+..+.|...-+.+......-...+++.||+|.+
T Consensus 350 ~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~-----R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y 424 (1034)
T KOG4150|consen 350 GQVVHVEVIKARKSAYVEMSDKLSETTKSALK-----RIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALY 424 (1034)
T ss_pred ceEEEEEehhhhhcceeecccCCCchhHHHHH-----hcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeee
Confidence 22110 001111111111111111111 1124555555555444332222222222223557999999987
Q ss_pred ccc-CCCcHHHHHHHHHHHhhC---CCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCc-----
Q 014134 171 SSW-GHDFRPSYRKLSSLRNYL---PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL----- 241 (430)
Q Consensus 171 ~~~-~~~~~~~~~~l~~~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 241 (430)
.-. +....-.++.+.+++.-| .+.+++-.+||.-..+. ......+......+...-.+..-...+.....
T Consensus 425 ~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~-~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~ 503 (1034)
T KOG4150|consen 425 LFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTR-LRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTS 503 (1034)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHH-HHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcc
Confidence 542 222222344555554443 37789999998877643 33444455554444433333333333322211
Q ss_pred ---chhHHHHHHHHHHh--cCCceEEEEeCccccHHHHHHHHHc----CCC----cceeecCCCCHHHHHHHHHHhhcCC
Q 014134 242 ---LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSA----GGI----SCAAYHAGLNDKARSSVLDDWISSR 308 (430)
Q Consensus 242 ---~~~~~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~----~~~----~~~~~hg~~~~~~r~~~~~~f~~g~ 308 (430)
...++.....++.+ ..+-++|-||.+++.|+.+....++ .+. .+..+.|+...++|.++....-.|+
T Consensus 504 ~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~ 583 (1034)
T KOG4150|consen 504 KSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGK 583 (1034)
T ss_pred hhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCe
Confidence 11233333333322 1456899999999999877655443 222 2456789999999999999999999
Q ss_pred ceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCc
Q 014134 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGM 364 (430)
Q Consensus 309 ~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~ 364 (430)
..-+|+|.+++.|||+...+-|++.++|.|.+++.|..||+||.++...++++...
T Consensus 584 L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~ 639 (1034)
T KOG4150|consen 584 LCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFL 639 (1034)
T ss_pred eeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEec
Confidence 99999999999999999999999999999999999999999999998877766543
No 132
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=3.7e-18 Score=163.06 Aligned_cols=300 Identities=16% Similarity=0.163 Sum_probs=186.1
Q ss_pred HHHHHHHcCCCEEEEcCCCChHHHHh---HHhh-h-c----CCCeEEEEcchHHHHHHHHHHHHH-cC---cceeEeCCC
Q 014134 45 DAIQAVLSGRDCFCLMPTGGGKSMCY---QIPA-L-A----KPGIVLVVSPLIALMENQVIGLKE-KG---IAGEFLSST 111 (430)
Q Consensus 45 ~~~~~l~~~~~~lv~a~tGsGKT~~~---~~~~-l-~----~~~~~lil~Pt~~L~~q~~~~~~~-~~---~~~~~~~~~ 111 (430)
+.+++|-.+--+|+||.||||||.-. ++-+ + + ...-+=|.-|.|.-|-.++++... ++ ..+.+...
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIR- 341 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIR- 341 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEE-
Confidence 35555556667899999999999542 2111 1 1 133566777888666666554322 32 22222111
Q ss_pred chHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHH-HHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhh
Q 014134 112 QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK-LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 190 (430)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~-~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~ 190 (430)
+++.... .+.+.+.|.|.+.+ +....-+..++.||+||||.=.=...-+-..++++-.++..
T Consensus 342 ---------fd~ti~e--------~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k 404 (1172)
T KOG0926|consen 342 ---------FDGTIGE--------DTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQK 404 (1172)
T ss_pred ---------eccccCC--------CceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHH
Confidence 1111111 12237888885444 55566677899999999997321111112223334334333
Q ss_pred CC-------CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCc---chhHHHHHHHHHHhcCCce
Q 014134 191 LP-------DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL---LDDAYADLCSVLKANGDTC 260 (430)
Q Consensus 191 ~~-------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~ 260 (430)
.. ..++|+||||+.-..+..-...+....| ++......-.+..++..... ....+...+.+-+..+.+.
T Consensus 405 ~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pP-likVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ 483 (1172)
T KOG0926|consen 405 YYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPP-LIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGG 483 (1172)
T ss_pred HhhhhcccCceeEEEEeeeEEecccccCceecCCCCc-eeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCc
Confidence 32 4569999999875544333344445555 33322222222223333222 2355566666667778889
Q ss_pred EEEEeCccccHHHHHHHHHcCCC---------------------------------------------------------
Q 014134 261 AIVYCLERTTCDELSAYLSAGGI--------------------------------------------------------- 283 (430)
Q Consensus 261 ~iVf~~s~~~~~~l~~~l~~~~~--------------------------------------------------------- 283 (430)
+|||+..+.+++++++.|++...
T Consensus 484 ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~ 563 (1172)
T KOG0926|consen 484 ILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFAS 563 (1172)
T ss_pred EEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchh
Confidence 99999999999999999875310
Q ss_pred ------------------------------------------cceeecCCCCHHHHHHHHHHhhcCCceEEEEecccccc
Q 014134 284 ------------------------------------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (430)
Q Consensus 284 ------------------------------------------~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~G 321 (430)
-|..+++-++.+++.++++.--+|..-++|+|.++++.
T Consensus 564 ~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETS 643 (1172)
T KOG0926|consen 564 LRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETS 643 (1172)
T ss_pred hhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcc
Confidence 13456666777777777777778888899999999999
Q ss_pred ccccCceEEEEecC--------CC----------CHHHHHHHhccCCCCCCCceEEEeeCc
Q 014134 322 IDRKDVRLVCHFNI--------PK----------SMEAFYQESGRAGRDQLPSKSLLYYGM 364 (430)
Q Consensus 322 idi~~~~~vi~~~~--------p~----------s~~~~~q~~GR~~R~g~~g~~i~~~~~ 364 (430)
+.||++.+||..+- -. |..+--||.||+||.| .|.|+-+++.
T Consensus 644 LTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 644 LTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred cccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 99999999996543 22 4445579999999985 8899988754
No 133
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.79 E-value=3.5e-19 Score=128.66 Aligned_cols=78 Identities=35% Similarity=0.520 Sum_probs=75.4
Q ss_pred HHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCC
Q 014134 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 353 (430)
Q Consensus 276 ~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g 353 (430)
+.|+..++.+..+||++++.+|..+++.|++++..+||||+++++|+|+|.+++||++++|+|+..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999986
No 134
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=4.4e-17 Score=147.91 Aligned_cols=317 Identities=15% Similarity=0.159 Sum_probs=201.8
Q ss_pred cccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHh----HHhhhcCCCeEEEEcchHH
Q 014134 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY----QIPALAKPGIVLVVSPLIA 89 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~----~~~~l~~~~~~lil~Pt~~ 89 (430)
...|...+-++.-.+.|+..-. -.....+.+-++.+.+++-+++.|.||||||.-. +-..+.....+...-|.|.
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~-LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrv 102 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRE-LPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRV 102 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhc-CchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHH
Confidence 3445666777777777776311 1233444556666778889999999999999432 1122333467888889998
Q ss_pred HHHHHHHHHHH-cCcce--------eEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHH-HHHhhhcCCc
Q 014134 90 LMENQVIGLKE-KGIAG--------EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK-LKKIHSRGLL 159 (430)
Q Consensus 90 L~~q~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~-~~~~~~~~~~ 159 (430)
-|.+++.+... +.+.. .+.......... ..+|.+.+.+ .+....++.+
T Consensus 103 aamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~L----------------------ky~tDgmLlrEams~p~l~~y 160 (699)
T KOG0925|consen 103 AAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLL----------------------KYCTDGMLLREAMSDPLLGRY 160 (699)
T ss_pred HHHHHHHHHHHHhccccchhccccccccccCChhHHH----------------------HHhcchHHHHHHhhCcccccc
Confidence 88888766544 22211 111111111100 3456554333 4555667889
Q ss_pred cEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEE-e
Q 014134 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR-Y 238 (430)
Q Consensus 160 ~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 238 (430)
+++|+||||. +.-....++..++++....|+.++|.+|||+...-.+ .++ .+.|.+-..+..+..+++... .
T Consensus 161 ~viiLDeahE---RtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq---~yf-~n~Pll~vpg~~PvEi~Yt~e~e 233 (699)
T KOG0925|consen 161 GVIILDEAHE---RTLATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQ---RYF-GNAPLLAVPGTHPVEIFYTPEPE 233 (699)
T ss_pred cEEEechhhh---hhHHHHHHHHHHHHHHhhCCCceEEEeecccchHHHH---HHh-CCCCeeecCCCCceEEEecCCCC
Confidence 9999999997 3333444556677777777999999999998765333 333 233443333333333322222 1
Q ss_pred cCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcC---------CCcceeecCCCCHHHHHHHHHHhh---c
Q 014134 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------GISCAAYHAGLNDKARSSVLDDWI---S 306 (430)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~---------~~~~~~~hg~~~~~~r~~~~~~f~---~ 306 (430)
.+..+..+..+.++-.....+.++||....++.+..++.+... .+.+..+| +++...+++.-- +
T Consensus 234 rDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~ 309 (699)
T KOG0925|consen 234 RDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRN 309 (699)
T ss_pred hhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccC
Confidence 2223445555555555456778999999999998888887632 24566777 333333333222 1
Q ss_pred C--CceEEEEeccccccccccCceEEEEecC------------------CCCHHHHHHHhccCCCCCCCceEEEeeCcc
Q 014134 307 S--RKQVVVATVAFGMGIDRKDVRLVCHFNI------------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (430)
Q Consensus 307 g--~~~vLv~T~~~~~Gidi~~~~~vi~~~~------------------p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~ 365 (430)
| ..+|+|+|.+++..+.++++-+||.-++ |-|..+-.||.||+||. .+|.|+-++++.
T Consensus 310 ~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 310 GAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred CCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 2 2579999999999999999999996543 56889999999999997 789999998764
No 135
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=1.1e-16 Score=159.10 Aligned_cols=121 Identities=24% Similarity=0.264 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHHh--cCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCC-ceEEEEecccc
Q 014134 243 DDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFG 319 (430)
Q Consensus 243 ~~~~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~-~~vLv~T~~~~ 319 (430)
..|+..+.+.+.. ..+.|+||-+.|++..+.++..|++.+++...++......+-+-+- ..|+ -.|.|||.+++
T Consensus 432 ~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAG 508 (913)
T PRK13103 432 EEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAG 508 (913)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCC
Confidence 4677777776664 2688999999999999999999999999988888874433322222 3454 45999999999
Q ss_pred cccccc-------------------------------------CceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEee
Q 014134 320 MGIDRK-------------------------------------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362 (430)
Q Consensus 320 ~Gidi~-------------------------------------~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~ 362 (430)
||.||. +==+||-...+.|..-=-|..||+||.|.+|.+-+|+
T Consensus 509 RGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~l 588 (913)
T PRK13103 509 RGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYL 588 (913)
T ss_pred CCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEE
Confidence 999984 1125777777888888899999999999999999998
Q ss_pred Cccc
Q 014134 363 GMDD 366 (430)
Q Consensus 363 ~~~~ 366 (430)
+-+|
T Consensus 589 SlED 592 (913)
T PRK13103 589 SLED 592 (913)
T ss_pred EcCc
Confidence 7654
No 136
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.75 E-value=9.4e-17 Score=148.10 Aligned_cols=280 Identities=18% Similarity=0.168 Sum_probs=178.3
Q ss_pred CEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEE
Q 014134 55 DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLL 134 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 134 (430)
-++-+|||.||||.-++--. ......++-.|.|-||.++++.++..|+.+.+.++..... .. ......+.+
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl-~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE~~~-------~~-~~~~~a~hv 263 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRL-KSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEERRF-------VL-DNGNPAQHV 263 (700)
T ss_pred EEEEeCCCCCchhHHHHHHH-hhhccceecchHHHHHHHHHHHhhhcCCCccccccceeee-------cC-CCCCcccce
Confidence 46678899999998765433 3345679999999999999999999999887776533211 11 112234555
Q ss_pred EECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHH
Q 014134 135 YVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMES 214 (430)
Q Consensus 135 ~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 214 (430)
..|.+++.+.. .+++.|+||++++.+....+.. -+.+..+... =|-+.+- +.+...+...
T Consensus 264 ScTVEM~sv~~------------~yeVAViDEIQmm~Dp~RGwAW-TrALLGl~Ad-----EiHLCGe--psvldlV~~i 323 (700)
T KOG0953|consen 264 SCTVEMVSVNT------------PYEVAVIDEIQMMRDPSRGWAW-TRALLGLAAD-----EIHLCGE--PSVLDLVRKI 323 (700)
T ss_pred EEEEEEeecCC------------ceEEEEehhHHhhcCcccchHH-HHHHHhhhhh-----hhhccCC--chHHHHHHHH
Confidence 56666655532 3779999999999874332211 1222222211 1122222 2222222222
Q ss_pred hCCCC-CeEEeccCCCCceEEEEEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCc-ceeecCCC
Q 014134 215 LCLQN-PLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGL 292 (430)
Q Consensus 215 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~-~~~~hg~~ 292 (430)
+.... .+.+.. .....+-...+.+..-+.....+.++| |-|++..-.+...+.+.+.. ++.++|++
T Consensus 324 ~k~TGd~vev~~-----------YeRl~pL~v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYGsL 391 (700)
T KOG0953|consen 324 LKMTGDDVEVRE-----------YERLSPLVVEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYGSL 391 (700)
T ss_pred HhhcCCeeEEEe-----------ecccCcceehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcCcceEEEecCC
Confidence 22111 111111 111111111123444445444555544 44677888888889888765 99999999
Q ss_pred CHHHHHHHHHHhhc--CCceEEEEeccccccccccCceEEEEecC---------CCCHHHHHHHhccCCCCCC---CceE
Q 014134 293 NDKARSSVLDDWIS--SRKQVVVATVAFGMGIDRKDVRLVCHFNI---------PKSMEAFYQESGRAGRDQL---PSKS 358 (430)
Q Consensus 293 ~~~~r~~~~~~f~~--g~~~vLv~T~~~~~Gidi~~~~~vi~~~~---------p~s~~~~~q~~GR~~R~g~---~g~~ 358 (430)
|++.|.+.-..|++ ++.+||||||++++|+|+. ++-||++++ |.+.++..|..||+||.|. .|.+
T Consensus 392 PPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~v 470 (700)
T KOG0953|consen 392 PPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEV 470 (700)
T ss_pred CCchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceE
Confidence 99999999999997 8999999999999999998 777887776 3478899999999999874 4555
Q ss_pred EEeeCccchHHHHHHHHhc
Q 014134 359 LLYYGMDDRRRMEFILSKN 377 (430)
Q Consensus 359 i~~~~~~~~~~~~~~~~~~ 377 (430)
.++. .+|...++.+++..
T Consensus 471 Ttl~-~eDL~~L~~~l~~p 488 (700)
T KOG0953|consen 471 TTLH-SEDLKLLKRILKRP 488 (700)
T ss_pred EEee-HhhHHHHHHHHhCC
Confidence 5554 44666666666643
No 137
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.74 E-value=7.3e-15 Score=153.03 Aligned_cols=123 Identities=14% Similarity=0.141 Sum_probs=90.9
Q ss_pred CCceEEEEeCccccHHHHHHHHHcCCC--cceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCc--eEEEE
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAGGI--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV--RLVCH 332 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~~~--~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~--~~vi~ 332 (430)
.+++++|+++|.+..+.+++.|..... ...++.-+++...|.++++.|++++-.||++|....+|||+|+- ++||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 456899999999999999999976432 12223324444568899999999888999999999999999974 78888
Q ss_pred ecCCC------------------------------CHHHHHHHhccCCCCCCCceEEEeeCcc--chHHHHHHHHhccC
Q 014134 333 FNIPK------------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD--DRRRMEFILSKNQS 379 (430)
Q Consensus 333 ~~~p~------------------------------s~~~~~q~~GR~~R~g~~g~~i~~~~~~--~~~~~~~~~~~~~~ 379 (430)
..+|. -...+.|.+||.-|..+.--++++++.. ...+-+.+++.+-.
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sLP~ 909 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESLPT 909 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhCCC
Confidence 77663 1234589999999987654456666655 45566777777643
No 138
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=1.7e-15 Score=149.09 Aligned_cols=317 Identities=19% Similarity=0.163 Sum_probs=192.5
Q ss_pred HhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh---cCCCeEEEEcchHHHHHHHHHHHHH----cCcc
Q 014134 32 WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE----KGIA 104 (430)
Q Consensus 32 ~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt~~L~~q~~~~~~~----~~~~ 104 (430)
+.+|. .|++.|.-+-=.+. ..-+..+.||-|||+++.+|+. -.+..|-|++...-||..-.+++.. +|..
T Consensus 73 R~lG~-r~ydVQliGglvLh--~G~IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy~fLGLs 149 (925)
T PRK12903 73 RVLGK-RPYDVQIIGGIILD--LGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLS 149 (925)
T ss_pred HHhCC-CcCchHHHHHHHHh--cCCeeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHHHHhCCc
Confidence 44465 36666665554443 4458999999999999998875 3477889999999999855554433 6888
Q ss_pred eeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHH---HHhhhcCCccEEEEecCccccc---------
Q 014134 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISS--------- 172 (430)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~---~~~~~~~~~~~lViDE~h~~~~--------- 172 (430)
+...........+...| .++|.+++.--++-.-...++ ....-...+.+.|+||+|.++=
T Consensus 150 vG~i~~~~~~~~rr~aY--------~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLII 221 (925)
T PRK12903 150 VGINKANMDPNLKREAY--------ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLII 221 (925)
T ss_pred eeeeCCCCChHHHHHhc--------cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccc
Confidence 77766554444333332 245544444322221111111 1112234477889999988731
Q ss_pred cCC--CcHHHHHHHHHHHhhC-----------------------------------------------------------
Q 014134 173 WGH--DFRPSYRKLSSLRNYL----------------------------------------------------------- 191 (430)
Q Consensus 173 ~~~--~~~~~~~~l~~~~~~~----------------------------------------------------------- 191 (430)
.|+ .....+.....+...+
T Consensus 222 Sg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~ 301 (925)
T PRK12903 222 SGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDV 301 (925)
T ss_pred cCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 000 0001111111111100
Q ss_pred ------------------------------------------C----------------CCcEEEEEcCCCchhHHHHHH
Q 014134 192 ------------------------------------------P----------------DVPILALTATAAPKVQKDVME 213 (430)
Q Consensus 192 ------------------------------------------~----------------~~~~i~~SAT~~~~~~~~~~~ 213 (430)
+ -.++.+||+|..... .++..
T Consensus 302 dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~-~Ef~~ 380 (925)
T PRK12903 302 EYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEE-QEFID 380 (925)
T ss_pred ceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHH-HHHHH
Confidence 0 014556666644322 22222
Q ss_pred HhCCCCCeEEeccCCCCceEEEEE--ecCcchhHHHHHHHHHHh--cCCceEEEEeCccccHHHHHHHHHcCCCcceeec
Q 014134 214 SLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 289 (430)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~h 289 (430)
.+ +-.++....+.|.+..... .......++..+.+.+.. ..+.|+||.|.|++.++.++..|.+.|++...++
T Consensus 381 iY---~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLN 457 (925)
T PRK12903 381 IY---NMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLN 457 (925)
T ss_pred Hh---CCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeec
Confidence 22 2223333334443332211 122335667777666654 2678999999999999999999999999988888
Q ss_pred CCCCHHHHHHHHHHhhcCC-ceEEEEeccccccccccCce--------EEEEecCCCCHHHHHHHhccCCCCCCCceEEE
Q 014134 290 AGLNDKARSSVLDDWISSR-KQVVVATVAFGMGIDRKDVR--------LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360 (430)
Q Consensus 290 g~~~~~~r~~~~~~f~~g~-~~vLv~T~~~~~Gidi~~~~--------~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~ 360 (430)
.+-. +++.-+-. ..|. -.|.|||++++||.||.--. +||....|.|..-=-|..||+||.|.+|.+-.
T Consensus 458 Ak~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f 534 (925)
T PRK12903 458 AKQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRF 534 (925)
T ss_pred ccch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceE
Confidence 8643 33333322 3454 45999999999999987322 78888888888888899999999999999999
Q ss_pred eeCccc
Q 014134 361 YYGMDD 366 (430)
Q Consensus 361 ~~~~~~ 366 (430)
|++-+|
T Consensus 535 ~lSLeD 540 (925)
T PRK12903 535 FISLDD 540 (925)
T ss_pred EEecch
Confidence 887664
No 139
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.73 E-value=1.9e-17 Score=162.00 Aligned_cols=324 Identities=18% Similarity=0.167 Sum_probs=223.7
Q ss_pred ccchHHHHHHHHHHHc---C-CCEEEEcCCCChHHHHhH------HhhhcCCCeEEEEcchHHHHHHHHHHHHHcCccee
Q 014134 37 AQFRDKQLDAIQAVLS---G-RDCFCLMPTGGGKSMCYQ------IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~~---~-~~~lv~a~tGsGKT~~~~------~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 106 (430)
.++.+||.+++.++.. + -+.|+...+|-|||...+ +-.....+.-+|++|+..|.+ |..+|..+...+.
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaPSv~ 471 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAPSVQ 471 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhcccccccee
Confidence 4799999999999863 3 488999999999995432 222234667899999999987 7778888777777
Q ss_pred EeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHH
Q 014134 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (430)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~ 186 (430)
.....+....+..+...+.. ...+++.++.+.|.-+. .....-.|.++||||.|++.+.. ..+..
T Consensus 472 ~i~YkGtp~~R~~l~~qir~--gKFnVLlTtyEyiikdk------~lLsKI~W~yMIIDEGHRmKNa~-------~KLt~ 536 (1157)
T KOG0386|consen 472 KIQYKGTPQQRSGLTKQQRH--GKFNVLLTTYEYIIKDK------ALLSKISWKYMIIDEGHRMKNAI-------CKLTD 536 (1157)
T ss_pred eeeeeCCHHHHhhHHHHHhc--ccceeeeeeHHHhcCCH------HHHhccCCcceeecccccccchh-------hHHHH
Confidence 77677777777666666665 44666555555444422 22223347799999999987633 34444
Q ss_pred HHh-hCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccC------CC------------------------------
Q 014134 187 LRN-YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF------NR------------------------------ 229 (430)
Q Consensus 187 ~~~-~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~------~~------------------------------ 229 (430)
..+ .+.....+++|+||..+...++|..+...-|.++.... +.
T Consensus 537 ~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPF 616 (1157)
T KOG0386|consen 537 TLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPF 616 (1157)
T ss_pred HhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHH
Confidence 444 33445589999999887777666666544333321100 00
Q ss_pred ---------------------------------------------------------------------CceEEEE--Ee
Q 014134 230 ---------------------------------------------------------------------PNLFYEV--RY 238 (430)
Q Consensus 230 ---------------------------------------------------------------------~~~~~~~--~~ 238 (430)
+.++..+ ..
T Consensus 617 lLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~ 696 (1157)
T KOG0386|consen 617 LLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSY 696 (1157)
T ss_pred HHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcccc
Confidence 0000000 00
Q ss_pred cC--c------chhHHHHHHHHHHh--cCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCC
Q 014134 239 KD--L------LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (430)
Q Consensus 239 ~~--~------~~~~~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 308 (430)
.. . ...|+..+.+++-+ ..+.+++.||.-..-...+.++|.-.++....+.|.....+|...++.|+.-+
T Consensus 697 ~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pd 776 (1157)
T KOG0386|consen 697 TLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPD 776 (1157)
T ss_pred ccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCC
Confidence 00 0 00233444444432 24778999998888888888888888889999999999999999999999654
Q ss_pred c---eEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHh
Q 014134 309 K---QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (430)
Q Consensus 309 ~---~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~ 376 (430)
. ..|.+|...+.|+|+.-++.||.||..|++....|+-.|+.|.|+...+-++....-.+.-+.+++.
T Consensus 777 s~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~ 847 (1157)
T KOG0386|consen 777 SPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAE 847 (1157)
T ss_pred CceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHH
Confidence 3 3788999999999999999999999999999999999999999988777766544433333344333
No 140
>COG4889 Predicted helicase [General function prediction only]
Probab=99.73 E-value=9.6e-18 Score=161.68 Aligned_cols=317 Identities=18% Similarity=0.206 Sum_probs=177.1
Q ss_pred ccchHHHHHHHHHHHcC----CCEEEEcCCCChHHHHhHHhh-hcCCCeEEEEcchHHHHHHHHHHHHHc---CcceeEe
Q 014134 37 AQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCYQIPA-LAKPGIVLVVSPLIALMENQVIGLKEK---GIAGEFL 108 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~~~----~~~lv~a~tGsGKT~~~~~~~-l~~~~~~lil~Pt~~L~~q~~~~~~~~---~~~~~~~ 108 (430)
.+|+|+|+.|+....++ ...=+.+.+|+|||++.+-.+ .-...++|+|+|+.+|..|+.++|... .+.....
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~aV 239 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAAARILFLVPSISLLSQTLREWTAQKELDFRASAV 239 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhhhheEeecchHHHHHHHHHHHhhccCccceeEEE
Confidence 47999999999998865 345677889999999886432 112478999999999999999998763 2222222
Q ss_pred CCCchHHHH-----------------HHHHhhhhc--CCCceeEEEECCccccChhHHHHHHHhh--hcCCccEEEEecC
Q 014134 109 SSTQTMQVK-----------------TKIYEDLDS--GKPSLRLLYVTPELTATPGFMSKLKKIH--SRGLLNLVAIDEA 167 (430)
Q Consensus 109 ~~~~~~~~~-----------------~~~~~~~~~--~~~~~~i~~~~~~~v~T~~~~~~~~~~~--~~~~~~~lViDE~ 167 (430)
++....+.. ..+...... .....- ++++|...+....... .+..+++||+|||
T Consensus 240 cSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~------vvFsTYQSl~~i~eAQe~G~~~fDliicDEA 313 (1518)
T COG4889 240 CSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLT------VVFSTYQSLPRIKEAQEAGLDEFDLIICDEA 313 (1518)
T ss_pred ecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcE------EEEEcccchHHHHHHHHcCCCCccEEEecch
Confidence 221111100 001111111 111111 2677777666665433 3566999999999
Q ss_pred ccccccCCCcHH-HHHHHHHH--HhhCCCCcEEEEEcCCCchhHHHHHHHh--------CCCCCeEEeccCCC-------
Q 014134 168 HCISSWGHDFRP-SYRKLSSL--RNYLPDVPILALTATAAPKVQKDVMESL--------CLQNPLVLKSSFNR------- 229 (430)
Q Consensus 168 h~~~~~~~~~~~-~~~~l~~~--~~~~~~~~~i~~SAT~~~~~~~~~~~~~--------~~~~~~~~~~~~~~------- 229 (430)
|+-..-. ... .-+.+.++ .......+.+.|||||---... ..... .+.+...+...+.+
T Consensus 314 HRTtGa~--~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS-~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv 390 (1518)
T COG4889 314 HRTTGAT--LAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSES-SKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAV 390 (1518)
T ss_pred hccccce--ecccCcccceeecCcchhHHHHhhhcccCchhhchh-hhhhhhhccceeeccchhhhhchhhhcccHHHHH
Confidence 9963200 000 00001000 0111234577889996421100 00000 01111111110000
Q ss_pred -Cce----EEEEEecC---------------cchhHHHHH------HHHH-Hhc--------------CCceEEEEeCcc
Q 014134 230 -PNL----FYEVRYKD---------------LLDDAYADL------CSVL-KAN--------------GDTCAIVYCLER 268 (430)
Q Consensus 230 -~~~----~~~~~~~~---------------~~~~~~~~l------~~~l-~~~--------------~~~~~iVf~~s~ 268 (430)
..+ ...+...+ ...-.++.. ..-+ +.. +..+.|-||.+.
T Consensus 391 ~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I 470 (1518)
T COG4889 391 ERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDI 470 (1518)
T ss_pred HhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhh
Confidence 000 00000000 000011111 1111 111 234688899998
Q ss_pred ccHHHHHHHHHc-------------CCC--cceeecCCCCHHHHHHHHHH---hhcCCceEEEEeccccccccccCceEE
Q 014134 269 TTCDELSAYLSA-------------GGI--SCAAYHAGLNDKARSSVLDD---WISSRKQVVVATVAFGMGIDRKDVRLV 330 (430)
Q Consensus 269 ~~~~~l~~~l~~-------------~~~--~~~~~hg~~~~~~r~~~~~~---f~~g~~~vLv~T~~~~~Gidi~~~~~v 330 (430)
++..++++.+.. .++ .+-.+.|.|+..+|...+.. |..++++||---..+++|||+|..+-|
T Consensus 471 ~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsV 550 (1518)
T COG4889 471 KTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSV 550 (1518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceE
Confidence 888887776642 123 34456688999999655543 345778999888999999999999999
Q ss_pred EEecCCCCHHHHHHHhccCCCCCC-CceEEEee
Q 014134 331 CHFNIPKSMEAFYQESGRAGRDQL-PSKSLLYY 362 (430)
Q Consensus 331 i~~~~p~s~~~~~q~~GR~~R~g~-~g~~i~~~ 362 (430)
|++++-.+.-+.+|.+||+.|... ...+++++
T Consensus 551 iFf~pr~smVDIVQaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 551 IFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred EEecCchhHHHHHHHHHHHHHhCcCCccceEEE
Confidence 999999999999999999999642 33445443
No 141
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.72 E-value=1.6e-16 Score=137.11 Aligned_cols=165 Identities=33% Similarity=0.458 Sum_probs=114.2
Q ss_pred cCCccchHHHHHHHHHHHcC-CCEEEEcCCCChHHHHhHHhhhcC-----CCeEEEEcchHHHHHHHHHHHHHcCcc---
Q 014134 34 FGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIGLKEKGIA--- 104 (430)
Q Consensus 34 ~g~~~~~~~Q~~~~~~l~~~-~~~lv~a~tGsGKT~~~~~~~l~~-----~~~~lil~Pt~~L~~q~~~~~~~~~~~--- 104 (430)
+++.+++++|.++++.+... +++++.+|||+|||.++..+++.. ..++++++|++.++.|+...+......
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGL 83 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 57788999999999999998 999999999999999877766532 367999999999999999998886422
Q ss_pred --eeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh--hhcCCccEEEEecCccccccCCCcHHH
Q 014134 105 --GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNLVAIDEAHCISSWGHDFRPS 180 (430)
Q Consensus 105 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~--~~~~~~~~lViDE~h~~~~~~~~~~~~ 180 (430)
......... .............+ +++|++.+.+.... .....++++|+||+|.+.... +.
T Consensus 84 ~~~~~~~~~~~----~~~~~~~~~~~~~v--------~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~--~~-- 147 (201)
T smart00487 84 KVVGLYGGDSK----REQLRKLESGKTDI--------LVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGG--FG-- 147 (201)
T ss_pred EEEEEeCCcch----HHHHHHHhcCCCCE--------EEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCC--cH--
Confidence 222222111 11111222211122 88898877776554 345558899999999987532 33
Q ss_pred HHHHHHHHhhC-CCCcEEEEEcCCCchhHHHHHHHh
Q 014134 181 YRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (430)
Q Consensus 181 ~~~l~~~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~ 215 (430)
..+..+.... +..+++++|||+++..........
T Consensus 148 -~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~ 182 (201)
T smart00487 148 -DQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFL 182 (201)
T ss_pred -HHHHHHHHhCCccceEEEEecCCchhHHHHHHHhc
Confidence 3333333333 477899999999977666444444
No 142
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.71 E-value=2e-14 Score=140.84 Aligned_cols=168 Identities=14% Similarity=0.057 Sum_probs=108.6
Q ss_pred cEEEEEcCCCchh------HHHHHHHhCCCCCe-EEeccCC----CCc--eEEEEEe-----cCcc--------------
Q 014134 195 PILALTATAAPKV------QKDVMESLCLQNPL-VLKSSFN----RPN--LFYEVRY-----KDLL-------------- 242 (430)
Q Consensus 195 ~~i~~SAT~~~~~------~~~~~~~~~~~~~~-~~~~~~~----~~~--~~~~~~~-----~~~~-------------- 242 (430)
.+|+.|||+.-.. +..+...+++.... .+.+.++ ... +.+.... .+..
T Consensus 373 ~~I~TSATL~v~~~~~~~~F~~f~~~lGL~~~~l~~~SPFd~~y~~qa~~~LyvP~~~~~~lP~p~~~~~~~~~~~~~~~ 452 (636)
T TIGR03117 373 GAIIVSATLYLPDRFGQMSCDYLKRVLSLPLSRLDTPSPIVAPWVRNAIPHLHVPNAKARFLRPVGKDEQGDANLQEAER 452 (636)
T ss_pred eEEEEccccccCCcCCCcCcHHHHHhcCCCccceeCCCCCCchhHhcCceEEEEcCccccCCCCCCCCcccchhhhcchh
Confidence 5899999988644 56777777765332 2233344 223 2222211 0111
Q ss_pred ---hhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhc----CCceEEEEe
Q 014134 243 ---DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS----SRKQVVVAT 315 (430)
Q Consensus 243 ---~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~----g~~~vLv~T 315 (430)
....+.+..++... +++++|.+.|....+.+++.|...---...+.|..+ .+...+++|++ |...||++|
T Consensus 453 ~~~~~~~~~~~~~~~~~-~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt 529 (636)
T TIGR03117 453 TWLENVSLSTAAILRKA-QGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAA 529 (636)
T ss_pred hHHHHHHHHHHHHHHHc-CCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeC
Confidence 11345566666654 457999999999999999999764223455566443 45668888987 478899999
Q ss_pred ccccccccc--------c--CceEEEEecCCC-------------------------CHHHHHHHhccCCCCCCC--ceE
Q 014134 316 VAFGMGIDR--------K--DVRLVCHFNIPK-------------------------SMEAFYQESGRAGRDQLP--SKS 358 (430)
Q Consensus 316 ~~~~~Gidi--------~--~~~~vi~~~~p~-------------------------s~~~~~q~~GR~~R~g~~--g~~ 358 (430)
+.+.+|||+ | .+++||+..+|- ..-.+.|-+||.-|.... --.
T Consensus 530 ~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~ 609 (636)
T TIGR03117 530 GGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRR 609 (636)
T ss_pred CccccccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceE
Confidence 999999999 2 378899887772 123458899999998765 334
Q ss_pred EEeeCcc
Q 014134 359 LLYYGMD 365 (430)
Q Consensus 359 i~~~~~~ 365 (430)
++++++.
T Consensus 610 i~ilD~R 616 (636)
T TIGR03117 610 IHMLDGR 616 (636)
T ss_pred EEEEeCC
Confidence 4455544
No 143
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.71 E-value=9.2e-16 Score=151.74 Aligned_cols=131 Identities=18% Similarity=0.206 Sum_probs=108.8
Q ss_pred HHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCC-c-eEEEEecccccccc
Q 014134 246 YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-K-QVVVATVAFGMGID 323 (430)
Q Consensus 246 ~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~-~-~vLv~T~~~~~Gid 323 (430)
++.|+.-++. .+.++|||+.-.+..+-+...|.-+|+....+.|...-++|+..+++|+.+. + ..+++|...+.|||
T Consensus 1265 LAiLLqQLk~-eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiN 1343 (1958)
T KOG0391|consen 1265 LAILLQQLKS-EGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGIN 1343 (1958)
T ss_pred HHHHHHHHHh-cCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccc
Confidence 3344444444 5779999999999999999999999999999999999999999999999654 3 36788999999999
Q ss_pred ccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhc
Q 014134 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (430)
Q Consensus 324 i~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~ 377 (430)
+-++|.||+||..|++.-=.|.-.|+.|.|+.-.+.+|-.-.+...-+.|++..
T Consensus 1344 LtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkka 1397 (1958)
T KOG0391|consen 1344 LTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKA 1397 (1958)
T ss_pred cccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhh
Confidence 999999999999999999999999999999888877776555544445555554
No 144
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.70 E-value=1.3e-16 Score=135.91 Aligned_cols=151 Identities=25% Similarity=0.242 Sum_probs=92.8
Q ss_pred cchHHHHHHHHHHHc-------CCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCC
Q 014134 38 QFRDKQLDAIQAVLS-------GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~-------~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 110 (430)
+|+++|.+++..+.+ .+++++.+|||+|||.+++..+..-..++++++|+..|++|+.+.+..++........
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~ 82 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSEKYNFFE 82 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 589999999999884 5899999999999999887555433339999999999999999999654332221110
Q ss_pred Cch-----------HHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh-------------hhcCCccEEEEec
Q 014134 111 TQT-----------MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-------------HSRGLLNLVAIDE 166 (430)
Q Consensus 111 ~~~-----------~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~-------------~~~~~~~~lViDE 166 (430)
... ............... .++ .+.|...+...... ......++||+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DE 154 (184)
T PF04851_consen 83 KSIKPAYDSKEFISIQDDISDKSESDNND--KDI------ILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDE 154 (184)
T ss_dssp --GGGCCE-SEEETTTTEEEHHHHHCBSS---SE------EEEEHHHHHHHHHH---------GCHHGGGGSESEEEEET
T ss_pred ccccccccccccccccccccccccccccc--ccc------hhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEeh
Confidence 000 000000001111112 222 56666655544322 1233478999999
Q ss_pred CccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCc
Q 014134 167 AHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (430)
Q Consensus 167 ~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~ 205 (430)
||+..... ....+.. .++..+++|||||.+
T Consensus 155 aH~~~~~~--------~~~~i~~-~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 155 AHHYPSDS--------SYREIIE-FKAAFILGLTATPFR 184 (184)
T ss_dssp GGCTHHHH--------HHHHHHH-SSCCEEEEEESS-S-
T ss_pred hhhcCCHH--------HHHHHHc-CCCCeEEEEEeCccC
Confidence 99976521 1333333 667789999999863
No 145
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.68 E-value=8.7e-15 Score=144.98 Aligned_cols=277 Identities=16% Similarity=0.134 Sum_probs=161.5
Q ss_pred HhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh---cCCCeEEEEcchHHHHHHHHHHHHH----cCcc
Q 014134 32 WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE----KGIA 104 (430)
Q Consensus 32 ~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt~~L~~q~~~~~~~----~~~~ 104 (430)
+.+|+. |++.|.-+ .+.-.+.-++.+.||-|||+++.+|+. -.+..|-|++++..||.+-++++.. +|..
T Consensus 71 R~lG~r-~ydvQlig--~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLs 147 (870)
T CHL00122 71 RTLGLR-HFDVQLIG--GLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLT 147 (870)
T ss_pred HHhCCC-CCchHhhh--hHhhcCCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCCc
Confidence 444653 55666554 455567789999999999999998874 2478899999999999987776655 6888
Q ss_pred eeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHH---HhhhcCCccEEEEecCcccc-cc-------
Q 014134 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCIS-SW------- 173 (430)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~---~~~~~~~~~~lViDE~h~~~-~~------- 173 (430)
+...........+...+. ++|.+++.--++-.-...++. .......+.+.|+||+|.++ |.
T Consensus 148 vg~i~~~~~~~err~aY~--------~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiI 219 (870)
T CHL00122 148 VGLIQEGMSSEERKKNYL--------KDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLII 219 (870)
T ss_pred eeeeCCCCChHHHHHhcC--------CCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceec
Confidence 777665555444443332 445444443222111111110 11123447789999999873 10
Q ss_pred -CC----------------------Cc------------HHHHHHHHHHH---------------------hh--C----
Q 014134 174 -GH----------------------DF------------RPSYRKLSSLR---------------------NY--L---- 191 (430)
Q Consensus 174 -~~----------------------~~------------~~~~~~l~~~~---------------------~~--~---- 191 (430)
|. +| ..-...+..+. .. +
T Consensus 220 Sg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~ 299 (870)
T CHL00122 220 SGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNV 299 (870)
T ss_pred cCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCC
Confidence 00 00 00011111110 00 0
Q ss_pred ------------------------------------------C----------------CCcEEEEEcCCCchhHHHHHH
Q 014134 192 ------------------------------------------P----------------DVPILALTATAAPKVQKDVME 213 (430)
Q Consensus 192 ------------------------------------------~----------------~~~~i~~SAT~~~~~~~~~~~ 213 (430)
+ -.++.+||+|.... ..++..
T Consensus 300 dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te-~~Ef~~ 378 (870)
T CHL00122 300 HYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTE-ELEFEK 378 (870)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHH-HHHHHH
Confidence 0 11477777777543 233333
Q ss_pred HhCCCCCeEEeccCCCCceEEEE--EecCcchhHHHHHHHHHHh--cCCceEEEEeCccccHHHHHHHHHcCCCcceeec
Q 014134 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 289 (430)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~h 289 (430)
.++ .+ ++....+.|...... ........|+..+.+.+.. ..+.|+||-|.|++..+.++..|.+.|++..+++
T Consensus 379 iY~-l~--vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLN 455 (870)
T CHL00122 379 IYN-LE--VVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLN 455 (870)
T ss_pred HhC-CC--EEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceee
Confidence 322 22 233333333332222 1222334566666665543 3578999999999999999999999999999999
Q ss_pred CCCCHHHHH-HHHHHhhcCC-ceEEEEecccccccccc
Q 014134 290 AGLNDKARS-SVLDDWISSR-KQVVVATVAFGMGIDRK 325 (430)
Q Consensus 290 g~~~~~~r~-~~~~~f~~g~-~~vLv~T~~~~~Gidi~ 325 (430)
.+-...+++ .++.. .|+ -.|-|||++++||.||.
T Consensus 456 Ak~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 456 AKPENVRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred CCCccchhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 874222233 23321 344 45999999999999974
No 146
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.67 E-value=2.3e-16 Score=115.18 Aligned_cols=81 Identities=35% Similarity=0.534 Sum_probs=77.3
Q ss_pred HHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCC
Q 014134 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (430)
Q Consensus 273 ~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~ 352 (430)
.+++.|+..+..+..+||++++++|..+++.|+++...+|++|+++++|+|+|.+++||.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 014134 353 Q 353 (430)
Q Consensus 353 g 353 (430)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 147
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.66 E-value=3e-15 Score=141.65 Aligned_cols=123 Identities=20% Similarity=0.214 Sum_probs=103.9
Q ss_pred CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCce-EEEEeccccccccccCceEEEEecC
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ-VVVATVAFGMGIDRKDVRLVCHFNI 335 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~-vLv~T~~~~~Gidi~~~~~vi~~~~ 335 (430)
.+.++|+|+.-.+..+.+.++|...++....+.|.....+|..+..+|...++- .|++|.+.+-|||+..++.||+|+.
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdS 1122 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDS 1122 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecC
Confidence 577899999999999999999999999999999999999999999999987655 6889999999999999999999999
Q ss_pred CCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccC
Q 014134 336 PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (430)
Q Consensus 336 p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~ 379 (430)
.|++.-=.|...|++|-|+...+.++-.-.....-+++++....
T Consensus 1123 DWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~q 1166 (1185)
T KOG0388|consen 1123 DWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQ 1166 (1185)
T ss_pred CCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhh
Confidence 99999999999999999998776666443333333344444433
No 148
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.65 E-value=3.5e-14 Score=140.94 Aligned_cols=280 Identities=15% Similarity=0.018 Sum_probs=172.6
Q ss_pred EEEcCCCChHHHHhHHhh---hcCCCeEEEEcchHHHHHHHHHHHHH-cC-cceeEeCCCchHHHHHHHHhhhhcCCCce
Q 014134 57 FCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KG-IAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131 (430)
Q Consensus 57 lv~a~tGsGKT~~~~~~~---l~~~~~~lil~Pt~~L~~q~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (430)
+..+.+|||||.+|+-.+ +..+..+|+++|...|..|+.+.|+. ++ ....++++......+...+..+.... .
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~--~ 241 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQ--A 241 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCC--C
Confidence 334446999999998655 67788999999999999999999988 54 56778888888888888888776655 4
Q ss_pred eEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCC-CcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHH
Q 014134 132 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 210 (430)
Q Consensus 132 ~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~-~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~ 210 (430)
+|++++--.+-+ ++.++++||+||-|.-.-... .....-..+........+.++|+.|||++-+....
T Consensus 242 ~IViGtRSAvFa-----------P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 242 RVVVGTRSAVFA-----------PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred cEEEEcceeEEe-----------ccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHH
Confidence 554444443333 366789999999997532111 11222355555666667899999999999876543
Q ss_pred HHHHhCCCCCeEEe---ccCCCCceEEEEEec------------CcchhHHHHHHHHHHhcCCceEEEEeCcccc-----
Q 014134 211 VMESLCLQNPLVLK---SSFNRPNLFYEVRYK------------DLLDDAYADLCSVLKANGDTCAIVYCLERTT----- 270 (430)
Q Consensus 211 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~----- 270 (430)
..... ....... .....+.+....... ......++.+.+.++ .+ ++|||.|.+-.
T Consensus 311 ~~~g~--~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~--~g-qvll~lnRrGyap~l~ 385 (665)
T PRK14873 311 VESGW--AHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALE--HG-PVLVQVPRRGYVPSLA 385 (665)
T ss_pred HhcCc--ceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHh--cC-cEEEEecCCCCCCeeE
Confidence 22211 1100000 011112221111100 011233444444444 34 89999884322
Q ss_pred ------------------------------------------------------HHHHHHHHHcCCCcceeecCCCCHHH
Q 014134 271 ------------------------------------------------------CDELSAYLSAGGISCAAYHAGLNDKA 296 (430)
Q Consensus 271 ------------------------------------------------------~~~l~~~l~~~~~~~~~~hg~~~~~~ 296 (430)
.+++++.|.+...++-++.. +
T Consensus 386 C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~-----d 460 (665)
T PRK14873 386 CARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTS-----G 460 (665)
T ss_pred hhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEE-----C
Confidence 13444444333111111111 2
Q ss_pred HHHHHHHhhcCCceEEEEec----cccccccccCceEEEEecCCC------------CHHHHHHHhccCCCCCCCceEEE
Q 014134 297 RSSVLDDWISSRKQVVVATV----AFGMGIDRKDVRLVCHFNIPK------------SMEAFYQESGRAGRDQLPSKSLL 360 (430)
Q Consensus 297 r~~~~~~f~~g~~~vLv~T~----~~~~Gidi~~~~~vi~~~~p~------------s~~~~~q~~GR~~R~g~~g~~i~ 360 (430)
++.+++.|. ++.+|||+|+ +++ ++++.|+..|... ....+.|-.||+||.+..|.+++
T Consensus 461 ~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~i 534 (665)
T PRK14873 461 GDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVV 534 (665)
T ss_pred hHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEE
Confidence 345788886 5899999999 555 3577777666531 34566889999999999999998
Q ss_pred eeCcc
Q 014134 361 YYGMD 365 (430)
Q Consensus 361 ~~~~~ 365 (430)
...++
T Consensus 535 q~~p~ 539 (665)
T PRK14873 535 VAESS 539 (665)
T ss_pred EeCCC
Confidence 86544
No 149
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.63 E-value=8.5e-13 Score=133.49 Aligned_cols=126 Identities=17% Similarity=0.157 Sum_probs=88.0
Q ss_pred HHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhc----CCceEEEEecccccccc
Q 014134 248 DLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS----SRKQVVVATVAFGMGID 323 (430)
Q Consensus 248 ~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~----g~~~vLv~T~~~~~Gid 323 (430)
.+.+++. . ++.++|+++|.+..+.+++.|....-.....+|. ..|..+++.|++ ++..||++|..+.+|||
T Consensus 526 ~i~~l~~-~-~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD 600 (697)
T PRK11747 526 FLPELLE-K-HKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLD 600 (697)
T ss_pred HHHHHHh-c-CCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEecccccccc
Confidence 3444444 3 3458999999999999999987532123444554 256778877764 67789999999999999
Q ss_pred ccC--ceEEEEecCCC----CH--------------------------HHHHHHhccCCCCCCCceEEEeeCcc--chHH
Q 014134 324 RKD--VRLVCHFNIPK----SM--------------------------EAFYQESGRAGRDQLPSKSLLYYGMD--DRRR 369 (430)
Q Consensus 324 i~~--~~~vi~~~~p~----s~--------------------------~~~~q~~GR~~R~g~~g~~i~~~~~~--~~~~ 369 (430)
+|+ +++||...+|. ++ ..+.|.+||.-|...+--++++++.. ...+
T Consensus 601 ~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~~~Y 680 (697)
T PRK11747 601 LPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLTKRY 680 (697)
T ss_pred CCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccchhH
Confidence 987 68899888763 11 23478899999986554455555554 3455
Q ss_pred HHHHHHhcc
Q 014134 370 MEFILSKNQ 378 (430)
Q Consensus 370 ~~~~~~~~~ 378 (430)
-+.+++.+-
T Consensus 681 g~~~l~sLP 689 (697)
T PRK11747 681 GKRLLDALP 689 (697)
T ss_pred HHHHHHhCC
Confidence 567776663
No 150
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.63 E-value=8.8e-14 Score=141.59 Aligned_cols=114 Identities=19% Similarity=0.185 Sum_probs=82.9
Q ss_pred HHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCc-ceeecCCCCHHHHHHHHHHhhcCCc-eEEEEeccccccccc
Q 014134 247 ADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGIDR 324 (430)
Q Consensus 247 ~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~-~~~~hg~~~~~~r~~~~~~f~~g~~-~vLv~T~~~~~Gidi 324 (430)
..+.++++..+ ++++||++|.+..+.+++.+...... ....+|.. .+...++.|+++.- .++|+|..+++|||+
T Consensus 469 ~~i~~~~~~~~-~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~ 544 (654)
T COG1199 469 AYLREILKASP-GGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDF 544 (654)
T ss_pred HHHHHHHhhcC-CCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccC
Confidence 44455555544 48999999999999999999876543 34445544 34478888886655 899999999999999
Q ss_pred cCc--eEEEEecCCC------------------------------CHHHHHHHhccCCCCCCCceEEEeeCc
Q 014134 325 KDV--RLVCHFNIPK------------------------------SMEAFYQESGRAGRDQLPSKSLLYYGM 364 (430)
Q Consensus 325 ~~~--~~vi~~~~p~------------------------------s~~~~~q~~GR~~R~g~~g~~i~~~~~ 364 (430)
|+- ..||...+|. -...+.|.+||+-|....--++++++.
T Consensus 545 ~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 545 PGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred CCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 874 7788777763 344669999999997554444444444
No 151
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.61 E-value=5.1e-13 Score=132.40 Aligned_cols=125 Identities=18% Similarity=0.187 Sum_probs=81.2
Q ss_pred chHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc---CCCeEEEEcchHHHHHHHHHHHHH----cCcceeEeCCC
Q 014134 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE----KGIAGEFLSST 111 (430)
Q Consensus 39 ~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~---~~~~~lil~Pt~~L~~q~~~~~~~----~~~~~~~~~~~ 111 (430)
++|+-.+.+-.+.-...-+..+.||-|||+++.+|+.- .+..|-||+++..||.+-++++.. +|..+......
T Consensus 84 ~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~ 163 (939)
T PRK12902 84 MRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQD 163 (939)
T ss_pred CCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCC
Confidence 34444444555555677799999999999999988863 477899999999999976666544 68888776655
Q ss_pred chHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHH---hhhcCCccEEEEecCcccc
Q 014134 112 QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCIS 171 (430)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~---~~~~~~~~~lViDE~h~~~ 171 (430)
.....+...+ .++|+++++--++-.-...++.. ......+.+.|+||+|.++
T Consensus 164 ~~~~err~aY--------~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 164 MSPEERKKNY--------ACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred CChHHHHHhc--------CCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 5444333322 35665555543333222222221 1123457899999999873
No 152
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.56 E-value=3.4e-12 Score=130.12 Aligned_cols=69 Identities=22% Similarity=0.302 Sum_probs=59.0
Q ss_pred hcCCccchHHHHHHHHHHH----cCCCEEEEcCCCChHHHHhHHhhhc----CC--CeEEEEcchHHHHHHHHHHHHHc
Q 014134 33 HFGHAQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPALA----KP--GIVLVVSPLIALMENQVIGLKEK 101 (430)
Q Consensus 33 ~~g~~~~~~~Q~~~~~~l~----~~~~~lv~a~tGsGKT~~~~~~~l~----~~--~~~lil~Pt~~L~~q~~~~~~~~ 101 (430)
.|.|..++|.|.+.+..+. +++++++.||||+|||++.+.+++. .+ .+++|.+.|..-..|..++++..
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 3788888999999777654 5789999999999999999888773 23 68999999999999999999884
No 153
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.54 E-value=1e-12 Score=132.32 Aligned_cols=325 Identities=18% Similarity=0.129 Sum_probs=176.6
Q ss_pred chHHHHHHHHHHHc----C--C--CEEEEcCCCChHHHHhHHhh--hc---CCCeEEEEcchHHHHHHHHHHHHH-cCcc
Q 014134 39 FRDKQLDAIQAVLS----G--R--DCFCLMPTGGGKSMCYQIPA--LA---KPGIVLVVSPLIALMENQVIGLKE-KGIA 104 (430)
Q Consensus 39 ~~~~Q~~~~~~l~~----~--~--~~lv~a~tGsGKT~~~~~~~--l~---~~~~~lil~Pt~~L~~q~~~~~~~-~~~~ 104 (430)
-..||-+|+..+.. . . =++--|.||+|||++=.-.+ +. .+.+..|..-.|.|-.|+-+.+++ ++..
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~ 488 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLS 488 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCC
Confidence 45689999988763 1 1 25567899999998754332 32 244666666667676666666655 2221
Q ss_pred ---eeEeCCCchHHHHHHHH---------------------------------------hhhhcCCCceeEEEECCcccc
Q 014134 105 ---GEFLSSTQTMQVKTKIY---------------------------------------EDLDSGKPSLRLLYVTPELTA 142 (430)
Q Consensus 105 ---~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~i~~~~~~~v~ 142 (430)
..+..++.......... .......+..+-+...|..|+
T Consensus 489 ~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~ 568 (1110)
T TIGR02562 489 DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVC 568 (1110)
T ss_pred ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEe
Confidence 12222222111111000 000111223344555677899
Q ss_pred ChhHHHHHHHh-----hhcC----CccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHH
Q 014134 143 TPGFMSKLKKI-----HSRG----LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213 (430)
Q Consensus 143 T~~~~~~~~~~-----~~~~----~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~ 213 (430)
|+..+...... .... .-+.|||||+|.+... ....+..+.+.... -+.++++||||+|+.....+..
T Consensus 569 TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~---~~~~L~rlL~w~~~-lG~~VlLmSATLP~~l~~~L~~ 644 (1110)
T TIGR02562 569 TIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE---DLPALLRLVQLAGL-LGSRVLLSSATLPPALVKTLFR 644 (1110)
T ss_pred cHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH---HHHHHHHHHHHHHH-cCCCEEEEeCCCCHHHHHHHHH
Confidence 98855444211 1100 0246999999996442 22223333333333 3788999999999987666555
Q ss_pred HhC-----------CC-CCeEEe-ccCCC--------------------------------C----ceEEEEEec-Ccch
Q 014134 214 SLC-----------LQ-NPLVLK-SSFNR--------------------------------P----NLFYEVRYK-DLLD 243 (430)
Q Consensus 214 ~~~-----------~~-~~~~~~-~~~~~--------------------------------~----~~~~~~~~~-~~~~ 243 (430)
-+. .+ .+..+. .-++. + .....+... ....
T Consensus 645 Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~~ 724 (1110)
T TIGR02562 645 AYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPRENE 724 (1110)
T ss_pred HHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccchh
Confidence 431 11 111110 00000 0 000000000 0011
Q ss_pred hHHHHHHHHHHh--------c------CCce---EEEEeCccccHHHHHHHHHcCC------CcceeecCCCCHHHHHHH
Q 014134 244 DAYADLCSVLKA--------N------GDTC---AIVYCLERTTCDELSAYLSAGG------ISCAAYHAGLNDKARSSV 300 (430)
Q Consensus 244 ~~~~~l~~~l~~--------~------~~~~---~iVf~~s~~~~~~l~~~l~~~~------~~~~~~hg~~~~~~r~~~ 300 (430)
.....+.+.+.+ + .+++ .+|-+++++.+-.++..|.... +.+.++|+..+...|..+
T Consensus 725 ~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~ 804 (1110)
T TIGR02562 725 STYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYI 804 (1110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHH
Confidence 122222222211 1 1222 5677788888888888776542 346789999988888776
Q ss_pred HHHh----------------------hc----CCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCC
Q 014134 301 LDDW----------------------IS----SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354 (430)
Q Consensus 301 ~~~f----------------------~~----g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~ 354 (430)
++.. .+ +...|+|+|++++.|+|+. .+++|. -|.+....+|+.||+.|.|.
T Consensus 805 E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 805 ERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred HHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeeee--ccCcHHHHHHHhhccccccc
Confidence 6553 11 3567999999999999965 555543 46679999999999999875
Q ss_pred C--ceEEEeeCccchHHH
Q 014134 355 P--SKSLLYYGMDDRRRM 370 (430)
Q Consensus 355 ~--g~~i~~~~~~~~~~~ 370 (430)
. +..-+++...+.+.+
T Consensus 882 ~~~~~~N~~i~~~N~r~l 899 (1110)
T TIGR02562 882 EKVQQPNIVILQWNYRYL 899 (1110)
T ss_pred CCCCCCcEEEeHhHHHHh
Confidence 2 233333334444443
No 154
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.53 E-value=9.6e-13 Score=120.27 Aligned_cols=110 Identities=16% Similarity=0.158 Sum_probs=90.1
Q ss_pred CceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcC-CceE-EEEeccccccccccCceEEEEecC
Q 014134 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQV-VVATVAFGMGIDRKDVRLVCHFNI 335 (430)
Q Consensus 258 ~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g-~~~v-Lv~T~~~~~Gidi~~~~~vi~~~~ 335 (430)
.-+.|||.......+.+.-.|.+.|..|+-+-|+|++..|...++.|++. +++| |++-.+.+..+|+..+++|+..|+
T Consensus 638 t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP 717 (791)
T KOG1002|consen 638 TAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP 717 (791)
T ss_pred chhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc
Confidence 34667777666666667677778889999999999999999999999975 4554 566678888899999999999999
Q ss_pred CCCHHHHHHHhccCCCCCCC--ceEEEeeCccch
Q 014134 336 PKSMEAFYQESGRAGRDQLP--SKSLLYYGMDDR 367 (430)
Q Consensus 336 p~s~~~~~q~~GR~~R~g~~--g~~i~~~~~~~~ 367 (430)
-|++..=.|...|.+|.|+. =.++.|+-++..
T Consensus 718 WWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsi 751 (791)
T KOG1002|consen 718 WWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSI 751 (791)
T ss_pred cccHHHHhhhhhhHHhhcCccceeEEEeehhccH
Confidence 99999999999999999974 456666666544
No 155
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.52 E-value=1.9e-13 Score=110.85 Aligned_cols=134 Identities=32% Similarity=0.383 Sum_probs=85.7
Q ss_pred CCEEEEcCCCChHHHHhHHhhhc-----CCCeEEEEcchHHHHHHHHHHHHHcC---cceeEeCCCchHHHHHHHHhhhh
Q 014134 54 RDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEKG---IAGEFLSSTQTMQVKTKIYEDLD 125 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~~~l~-----~~~~~lil~Pt~~L~~q~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 125 (430)
+++++.+|||+|||.+++..+.. ...+++|++|++.++.|+.+.+.... ................ ...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 76 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLL 76 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHh
Confidence 46899999999999887766542 35789999999999999998887754 3333333322211111 111
Q ss_pred cCCCceeEEEECCccccChhHHHHHHHhh--hcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCC
Q 014134 126 SGKPSLRLLYVTPELTATPGFMSKLKKIH--SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (430)
Q Consensus 126 ~~~~~~~i~~~~~~~v~T~~~~~~~~~~~--~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~ 203 (430)
... .++ +++|++.+....... ....++++|+||+|.+..... .... ........+..+++++||||
T Consensus 77 ~~~--~~i------~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~--~~~~--~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 SGK--TDI------VVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGF--GLLG--LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cCC--CCE------EEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcch--HHHH--HHHHhhCCccceEEEEeccC
Confidence 112 222 788888665554332 244588999999999876431 1110 12233345578899999996
No 156
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.47 E-value=1.5e-12 Score=127.25 Aligned_cols=120 Identities=14% Similarity=0.092 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhc--CCceEEEEeCccccHHHHHHHHHcC----------------------CCcceeecCCCCHHHHHHH
Q 014134 245 AYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAG----------------------GISCAAYHAGLNDKARSSV 300 (430)
Q Consensus 245 ~~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~----------------------~~~~~~~hg~~~~~~r~~~ 300 (430)
++-.|+++|+.. -+.+.|||..|....+.+..+|... |...+.+.|.....+|.+.
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 444566666543 4779999999999998888888632 3356789999999999999
Q ss_pred HHHhhcCC---c-eEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCc
Q 014134 301 LDDWISSR---K-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGM 364 (430)
Q Consensus 301 ~~~f~~g~---~-~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~ 364 (430)
.+.|++-. . -.||+|.+.+-|+|+-.++-||++|..|+|+.=.|-+=|+-|.|+...|++|-.-
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfi 1274 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFI 1274 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhh
Confidence 99999643 2 2799999999999999999999999999999999999999999999999988543
No 157
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.46 E-value=3.4e-12 Score=121.34 Aligned_cols=118 Identities=11% Similarity=0.108 Sum_probs=88.5
Q ss_pred CceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhc--CCceE-EEEeccccccccccCceEEEEec
Q 014134 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS--SRKQV-VVATVAFGMGIDRKDVRLVCHFN 334 (430)
Q Consensus 258 ~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~--g~~~v-Lv~T~~~~~Gidi~~~~~vi~~~ 334 (430)
..+++|...=.....-+...|++.|.....+||....++|+.+++.|.. |..+| |++-...+.|+|+-+.+|+|.+|
T Consensus 746 keK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvD 825 (901)
T KOG4439|consen 746 KEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVD 825 (901)
T ss_pred cceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEe
Confidence 3344444333333455556677778888999999999999999999984 44555 45557788999999999999999
Q ss_pred CCCCHHHHHHHhccCCCCCCCceEEEe---eCccchHHHHHHHH
Q 014134 335 IPKSMEAFYQESGRAGRDQLPSKSLLY---YGMDDRRRMEFILS 375 (430)
Q Consensus 335 ~p~s~~~~~q~~GR~~R~g~~g~~i~~---~~~~~~~~~~~~~~ 375 (430)
+-|+++-=.|.+.|..|.|+...+++. +...-.+++..+.+
T Consensus 826 lHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQd 869 (901)
T KOG4439|consen 826 LHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQD 869 (901)
T ss_pred cccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHH
Confidence 999999999999999999998877765 22233444444433
No 158
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.44 E-value=1.1e-11 Score=124.51 Aligned_cols=136 Identities=22% Similarity=0.242 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHHhc--CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCC-ceEEEEecccc
Q 014134 243 DDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFG 319 (430)
Q Consensus 243 ~~~~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~-~~vLv~T~~~~ 319 (430)
..|+..+.+.+... .+.|+||-+.|++..+.++..|...|++...++.+....+-+-+-+ .|. -.|-|||.+++
T Consensus 611 ~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~---AG~~GaVTIATNMAG 687 (1112)
T PRK12901 611 REKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE---AGQPGTVTIATNMAG 687 (1112)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHh---cCCCCcEEEeccCcC
Confidence 35677776666543 6889999999999999999999999999888888754444333333 343 35899999999
Q ss_pred cccccc--------CceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccch-------HHHHHHHHhccCCC
Q 014134 320 MGIDRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR-------RRMEFILSKNQSKN 381 (430)
Q Consensus 320 ~Gidi~--------~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~-------~~~~~~~~~~~~~~ 381 (430)
||-||. +==+||-...+.|..---|..||+||.|.+|.+-+|++-+|. +.+..+++.++..+
T Consensus 688 RGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLmr~Fgs~ri~~~m~~~g~~e 764 (1112)
T PRK12901 688 RGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFGSERIAKVMDRMGLKE 764 (1112)
T ss_pred CCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHHHhhCcHHHHHHHHHcCCCC
Confidence 999987 224677778899999999999999999999999998876642 34556666665543
No 159
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.40 E-value=1.9e-11 Score=129.43 Aligned_cols=119 Identities=19% Similarity=0.187 Sum_probs=101.8
Q ss_pred HHHHHHHHH-Hh--cCCc--eEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcC--CceEEEEecc
Q 014134 245 AYADLCSVL-KA--NGDT--CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS--RKQVVVATVA 317 (430)
Q Consensus 245 ~~~~l~~~l-~~--~~~~--~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g--~~~vLv~T~~ 317 (430)
+...+.+++ .. ..+. ++++|.......+-+...+...++....++|+++.++|...++.|.++ ..-+++++.+
T Consensus 693 k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~ka 772 (866)
T COG0553 693 KLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKA 772 (866)
T ss_pred HHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecc
Confidence 455555555 22 2355 899999999999999999999988899999999999999999999986 3456777889
Q ss_pred ccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeC
Q 014134 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363 (430)
Q Consensus 318 ~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~ 363 (430)
.+.|+|+-..++||++|+.|++....|...|+.|.|+...+.++-.
T Consensus 773 gg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~ 818 (866)
T COG0553 773 GGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRL 818 (866)
T ss_pred cccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEe
Confidence 9999999999999999999999999999999999998877666543
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.36 E-value=3.7e-11 Score=118.20 Aligned_cols=282 Identities=15% Similarity=0.131 Sum_probs=169.0
Q ss_pred CEEEEcCCCChHHHHhHHhhh----cCCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCc
Q 014134 55 DCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS 130 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~~~l----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (430)
-.++.||.|||||.+..-++- +...++++++-.+.|+.+....++..+............. .+. ...
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~-------~i~--~~~ 121 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDY-------IID--GRP 121 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccc-------ccc--ccc
Confidence 467999999999987765553 3468999999999999999999988654322211111000 000 001
Q ss_pred eeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHH-------HHHHHHHhhCCCCcEEEEEcCC
Q 014134 131 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY-------RKLSSLRNYLPDVPILALTATA 203 (430)
Q Consensus 131 ~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~i~~SAT~ 203 (430)
.+. ++...+.+.++. ....+++++||+||+-..+..= +.+.+ ..+..++.. ...+|++-|++
T Consensus 122 ~~r------LivqIdSL~R~~-~~~l~~yDvVIIDEv~svL~qL--~S~Tm~~~~~v~~~L~~lI~~--ak~VI~~DA~l 190 (824)
T PF02399_consen 122 YDR------LIVQIDSLHRLD-GSLLDRYDVVIIDEVMSVLNQL--FSPTMRQREEVDNLLKELIRN--AKTVIVMDADL 190 (824)
T ss_pred cCe------EEEEehhhhhcc-cccccccCEEEEehHHHHHHHH--hHHHHhhHHHHHHHHHHHHHh--CCeEEEecCCC
Confidence 111 333333332322 1124458999999998876531 33332 333333332 44699999999
Q ss_pred CchhHHHHHHHhCCCCCeEEecc-----CCCCceEEE----------------------------------EEecCcchh
Q 014134 204 APKVQKDVMESLCLQNPLVLKSS-----FNRPNLFYE----------------------------------VRYKDLLDD 244 (430)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----------------------------------~~~~~~~~~ 244 (430)
.....+.+...-+..+..++... +....-... .........
T Consensus 191 n~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 270 (824)
T PF02399_consen 191 NDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETT 270 (824)
T ss_pred CHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhh
Confidence 99888766664433333333221 111000000 000000112
Q ss_pred HHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccc
Q 014134 245 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324 (430)
Q Consensus 245 ~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi 324 (430)
-...|..-+. .++++-||++|...++.+++.....+..+..++|.-+..+. +. =++++|++-|+++..|+++
T Consensus 271 F~~~L~~~L~--~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf 342 (824)
T PF02399_consen 271 FFSELLARLN--AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSF 342 (824)
T ss_pred HHHHHHHHHh--CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEecc
Confidence 2233333333 46788899999999999999998888888888887665532 11 3678999999999999998
Q ss_pred cCc--eEEEEecCC----CCHHHHHHHhccCCCCCCCceEEEeeCcc
Q 014134 325 KDV--RLVCHFNIP----KSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (430)
Q Consensus 325 ~~~--~~vi~~~~p----~s~~~~~q~~GR~~R~g~~g~~i~~~~~~ 365 (430)
-.. +-++-|=-| .+..+..|++||+-.- .....+++++..
T Consensus 343 ~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 343 EEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred chhhceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 643 444444222 3556789999999554 455666666554
No 161
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.33 E-value=1.3e-09 Score=102.06 Aligned_cols=237 Identities=14% Similarity=0.133 Sum_probs=161.6
Q ss_pred EECCccccChhHHHHHHH--------hhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCC--------------
Q 014134 135 YVTPELTATPGFMSKLKK--------IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-------------- 192 (430)
Q Consensus 135 ~~~~~~v~T~~~~~~~~~--------~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-------------- 192 (430)
..++++|++|--+..... ...++.++++|+|.+|.+.-.+ .. .+..+...++..|
T Consensus 130 y~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQN--W~-Hv~~v~~~lN~~P~~~~~~DfsRVR~w 206 (442)
T PF06862_consen 130 YSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQN--WE-HVLHVFEHLNLQPKKSHDTDFSRVRPW 206 (442)
T ss_pred ccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhh--HH-HHHHHHHHhccCCCCCCCCCHHHHHHH
Confidence 446779999987766544 2235668999999999875322 11 1111112222222
Q ss_pred --------CCcEEEEEcCCCchhHHHHHHHhCCCCCe-EE-----------eccCCCCceEEEEEecC---cchhHHHH-
Q 014134 193 --------DVPILALTATAAPKVQKDVMESLCLQNPL-VL-----------KSSFNRPNLFYEVRYKD---LLDDAYAD- 248 (430)
Q Consensus 193 --------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~~~~---~~~~~~~~- 248 (430)
-+|.|++|+...++....+.......... .+ ......++++..+.... ..+.+++.
T Consensus 207 ~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF 286 (442)
T PF06862_consen 207 YLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYF 286 (442)
T ss_pred HHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHH
Confidence 24899999999998766555433222111 11 11122223333322211 12233322
Q ss_pred ---HHHHHH-hcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccc--cccc
Q 014134 249 ---LCSVLK-ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF--GMGI 322 (430)
Q Consensus 249 ---l~~~l~-~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~--~~Gi 322 (430)
++..+. ....+.+|||++|.-.--.+.+.|++.++..+.+|...+..+-...-..|.+|+.++|+.|.-+ -+-.
T Consensus 287 ~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy 366 (442)
T PF06862_consen 287 TKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRY 366 (442)
T ss_pred HHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhc
Confidence 333333 4456789999999999999999999999999999999999999999999999999999999754 3567
Q ss_pred cccCceEEEEecCCCCHHHHHHHhccCCCCCC------CceEEEeeCccchHHHHHHH
Q 014134 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL------PSKSLLYYGMDDRRRMEFIL 374 (430)
Q Consensus 323 di~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~------~g~~i~~~~~~~~~~~~~~~ 374 (430)
.+.++..||.|++|..+.-|...++-.+.... ...|.++++.-|.-.++.++
T Consensus 367 ~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 367 RIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred eecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 88999999999999999999888865554433 57899999998887777764
No 162
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.29 E-value=3.7e-10 Score=117.55 Aligned_cols=277 Identities=20% Similarity=0.200 Sum_probs=154.1
Q ss_pred CCEEEEcCCCChHHHHhHHhh-----hcCCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCC
Q 014134 54 RDCFCLMPTGGGKSMCYQIPA-----LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~~~-----l~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (430)
+..+|+--+|||||++....+ +...+.+++|+-.++|-.|+.+.+..++..........+ ...+...+....
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s---~~~Lk~~l~~~~ 350 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAES---TSELKELLEDGK 350 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccC---HHHHHHHHhcCC
Confidence 469999999999997755333 245789999999999999999999997654433221111 122333333232
Q ss_pred CceeEEEECCccccChhHHHHHHHhh----hcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCC
Q 014134 129 PSLRLLYVTPELTATPGFMSKLKKIH----SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (430)
Q Consensus 129 ~~~~i~~~~~~~v~T~~~~~~~~~~~----~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~ 204 (430)
..+ +|+|-..+....... ..+.--+||+||||+--. | ..-..+...++++..++||+||-
T Consensus 351 ~~i--------i~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~-G-------~~~~~~~~~~~~a~~~gFTGTPi 414 (962)
T COG0610 351 GKI--------IVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY-G-------ELAKLLKKALKKAIFIGFTGTPI 414 (962)
T ss_pred CcE--------EEEEecccchhhhcccccccCCCcEEEEEechhhccc-c-------HHHHHHHHHhccceEEEeeCCcc
Confidence 233 777766655554321 122223799999999532 2 22233466678899999999987
Q ss_pred chhHHHH-HHHhCCCCCeEEe--ccCCCC---ceEEEEE-ecCcch----------------------------------
Q 014134 205 PKVQKDV-MESLCLQNPLVLK--SSFNRP---NLFYEVR-YKDLLD---------------------------------- 243 (430)
Q Consensus 205 ~~~~~~~-~~~~~~~~~~~~~--~~~~~~---~~~~~~~-~~~~~~---------------------------------- 243 (430)
......- ...++ ..-..+. ...... .+.+... ..+...
T Consensus 415 ~~~d~~tt~~~fg-~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 493 (962)
T COG0610 415 FKEDKDTTKDVFG-DYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEF 493 (962)
T ss_pred ccccccchhhhhc-ceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhH
Confidence 5432220 11111 1000000 000000 1111111 000000
Q ss_pred ---------hHHHHHHHHHHh--cCCceEEEEeCccccHHHHHHHHHcCCC---------c-c-------------eeec
Q 014134 244 ---------DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGI---------S-C-------------AAYH 289 (430)
Q Consensus 244 ---------~~~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~---------~-~-------------~~~h 289 (430)
.....+.+.... ..+.++.+.+.++..+..+++.+..... . + ...|
T Consensus 494 ~~~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 573 (962)
T COG0610 494 LAMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSH 573 (962)
T ss_pred HhcchHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhh
Confidence 011112222222 2356788888888855555554432100 0 0 0001
Q ss_pred CCCCHHHHHHHHHHh--hcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCC
Q 014134 290 AGLNDKARSSVLDDW--ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (430)
Q Consensus 290 g~~~~~~r~~~~~~f--~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~ 352 (430)
... ...+......| .+...++||.++++-+|.|.|.++ .+..|-|.-.-..+|.+.|+.|.
T Consensus 574 ~~~-~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~-TmYvDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 574 AKL-KDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLN-TLYVDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred HHH-HHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccc-eEEeccccccchHHHHHHHhccC
Confidence 111 22233444443 356789999999999999999665 45567788888999999999995
No 163
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.29 E-value=5.3e-12 Score=98.31 Aligned_cols=132 Identities=19% Similarity=0.163 Sum_probs=74.2
Q ss_pred CCCEEEEcCCCChHHHHhHHh----hhcCCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCC
Q 014134 53 GRDCFCLMPTGGGKSMCYQIP----ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~----~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (430)
|+--++...+|+|||.-.+-. .+.++.++|+|.|||.+++.+.+.++..... +....... . .. ..
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~--~~t~~~~~---~-~~-----g~ 72 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVR--FHTNARMR---T-HF-----GS 72 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEE--EESTTSS-------------SS
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcc--cCceeeec---c-cc-----CC
Confidence 445678899999999654433 3568999999999999999999999875422 22221110 0 00 11
Q ss_pred CceeEEEECCccccChhHHHH-HHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchh
Q 014134 129 PSLRLLYVTPELTATPGFMSK-LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (430)
Q Consensus 129 ~~~~i~~~~~~~v~T~~~~~~-~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~ 207 (430)
+.+-+.|+..+.+ +.+.....+++++|+||||-.....-.++ ..+... .....+.+|++||||+...
T Consensus 73 --------~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~r---g~l~~~-~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 73 --------SIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAAR---GYLREL-AESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp --------SSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHH---HHHHHH-HHTTS-EEEEEESS-TT--
T ss_pred --------CcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhh---eeHHHh-hhccCeeEEEEeCCCCCCC
Confidence 1125667665444 34455567799999999998543221122 122222 2234568999999999764
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.24 E-value=1.8e-11 Score=112.84 Aligned_cols=157 Identities=17% Similarity=0.075 Sum_probs=89.1
Q ss_pred HHHHHHHHHH-------------cCCCEEEEcCCCChHHHHhHHhhh---cC--C---CeEEEEcchHHHHHHHHHHHHH
Q 014134 42 KQLDAIQAVL-------------SGRDCFCLMPTGGGKSMCYQIPAL---AK--P---GIVLVVSPLIALMENQVIGLKE 100 (430)
Q Consensus 42 ~Q~~~~~~l~-------------~~~~~lv~a~tGsGKT~~~~~~~l---~~--~---~~~lil~Pt~~L~~q~~~~~~~ 100 (430)
+|.+++..++ ..+.++++..+|+|||..++..+. .. . ..+|||||. .+..||..++..
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 5888888874 235789999999999987765543 11 1 259999999 777899999998
Q ss_pred cCc--ceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHH-----HHHHhhhcCCccEEEEecCcccccc
Q 014134 101 KGI--AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS-----KLKKIHSRGLLNLVAIDEAHCISSW 173 (430)
Q Consensus 101 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~-----~~~~~~~~~~~~~lViDE~h~~~~~ 173 (430)
+.. ...+....... .............++ +++|++.+. ..........+++||+||+|.+.+.
T Consensus 80 ~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~v------vi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~ 149 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDS----ERRRLSKNQLPKYDV------VITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK 149 (299)
T ss_dssp HSGT-TS-EEEESSSC----HHHHTTSSSCCCSSE------EEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT
T ss_pred cccccccccccccccc----cccccccccccccee------eeccccccccccccccccccccccceeEEEecccccccc
Confidence 642 12222211111 011111122223334 666666555 2222233344889999999999654
Q ss_pred CCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhC
Q 014134 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLC 216 (430)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~ 216 (430)
+. ........+....++++||||..+...++...+.
T Consensus 150 ~s-------~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~ 185 (299)
T PF00176_consen 150 DS-------KRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLR 185 (299)
T ss_dssp TS-------HHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHH
T ss_pred cc-------cccccccccccceEEeeccccccccccccccchh
Confidence 42 2223333345667999999998876666555443
No 165
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.01 E-value=7.6e-08 Score=95.90 Aligned_cols=317 Identities=20% Similarity=0.187 Sum_probs=178.2
Q ss_pred cchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc---CCCeEEEEcchHHHHHHHHHH----HHHcCcceeEeCC
Q 014134 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIG----LKEKGIAGEFLSS 110 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~---~~~~~lil~Pt~~L~~q~~~~----~~~~~~~~~~~~~ 110 (430)
.++++-.+.+..+.-...-+.-+.||-|||+++.+|+.- .+..+.+|+...-||..-.++ +.-+|..+.+...
T Consensus 78 g~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~ 157 (822)
T COG0653 78 GMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILA 157 (822)
T ss_pred CCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccC
Confidence 355555666777777788899999999999999988852 367788899988888744444 4446888887777
Q ss_pred CchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHH---HhhhcCCccEEEEecCccccc---------cC-CCc
Q 014134 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS---------WG-HDF 177 (430)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~---~~~~~~~~~~lViDE~h~~~~---------~~-~~~ 177 (430)
......+...+. +++.+++.--++-.-.-..+. .......+.+.|+||+|.++= .| ...
T Consensus 158 ~m~~~ek~~aY~--------~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~ 229 (822)
T COG0653 158 GMSPEEKRAAYA--------CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAED 229 (822)
T ss_pred CCChHHHHHHHh--------cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeeccccc
Confidence 776555555443 566555554444322222221 112233477899999998731 12 111
Q ss_pred -HHHHHHHHHHHhhCC---------CCcEEEEEcCCCchhHH---------------------HH-HHHhCCCC------
Q 014134 178 -RPSYRKLSSLRNYLP---------DVPILALTATAAPKVQK---------------------DV-MESLCLQN------ 219 (430)
Q Consensus 178 -~~~~~~l~~~~~~~~---------~~~~i~~SAT~~~~~~~---------------------~~-~~~~~~~~------ 219 (430)
...+..+..+...+. ..+.|.+|-.=-....+ .+ ...+...+
T Consensus 230 ~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVr 309 (822)
T COG0653 230 SSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVR 309 (822)
T ss_pred CchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEe
Confidence 122333333332221 11233333220000000 00 00000000
Q ss_pred --CeEE--------------------------------------------------------------------------
Q 014134 220 --PLVL-------------------------------------------------------------------------- 223 (430)
Q Consensus 220 --~~~~-------------------------------------------------------------------------- 223 (430)
.+++
T Consensus 310 d~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~v 389 (822)
T COG0653 310 DGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDV 389 (822)
T ss_pred cCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCce
Confidence 0000
Q ss_pred -eccCCCCceE--EEEEecCcchhHHHHHHHHHHhc--CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHH
Q 014134 224 -KSSFNRPNLF--YEVRYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 298 (430)
Q Consensus 224 -~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~ 298 (430)
....+++.+. ..-........|+..+...++.. .+.|+||-+.+.+..+.+.+.|.+.|++-..++.+-.. |+
T Consensus 390 v~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~--~E 467 (822)
T COG0653 390 VVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHA--RE 467 (822)
T ss_pred eeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHH--HH
Confidence 0000001110 00001111236677777666543 68899999999999999999999999998777776543 33
Q ss_pred HHHHHhhcCCc-eEEEEeccccccccccCce-----------EEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCcc
Q 014134 299 SVLDDWISSRK-QVVVATVAFGMGIDRKDVR-----------LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (430)
Q Consensus 299 ~~~~~f~~g~~-~vLv~T~~~~~Gidi~~~~-----------~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~ 365 (430)
.-+-.. .|+. .|-|||.++++|-|+.--. +||--.--.|-.-=-|..||+||.|.+|.+-.|++-.
T Consensus 468 A~Iia~-AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSle 545 (822)
T COG0653 468 AEIIAQ-AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLE 545 (822)
T ss_pred HHHHhh-cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhH
Confidence 333332 3433 4889999999999985221 1221111112222248889999999999888887654
No 166
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=2.7e-08 Score=92.40 Aligned_cols=335 Identities=16% Similarity=0.134 Sum_probs=195.7
Q ss_pred ccchHHHHHHHHHHHcCCCEEEEc-CCCChHH--HHhHHhhhc----------------------------------CCC
Q 014134 37 AQFRDKQLDAIQAVLSGRDCFCLM-PTGGGKS--MCYQIPALA----------------------------------KPG 79 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~~~~~~lv~a-~tGsGKT--~~~~~~~l~----------------------------------~~~ 79 (430)
.++|+.|.+.+..+.+-+|++.-- ..+.|+- -.|.+-+++ ..+
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 479999999999999999987532 2234542 333333332 156
Q ss_pred eEEEEcchHHHHHHHHHHHHHc--Cccee---EeC------------------CCchHHHHHHHHhhhhc--------CC
Q 014134 80 IVLVVSPLIALMENQVIGLKEK--GIAGE---FLS------------------STQTMQVKTKIYEDLDS--------GK 128 (430)
Q Consensus 80 ~~lil~Pt~~L~~q~~~~~~~~--~~~~~---~~~------------------~~~~~~~~~~~~~~~~~--------~~ 128 (430)
+||||||+|+-|..++..+..+ |.... +.. ...+.+......+..++ ..
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 8999999999999999888774 21110 000 00000000000000000 00
Q ss_pred Cc---eeEEEECCccccChhHHHHHHH--------hhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCC-----
Q 014134 129 PS---LRLLYVTPELTATPGFMSKLKK--------IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP----- 192 (430)
Q Consensus 129 ~~---~~i~~~~~~~v~T~~~~~~~~~--------~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~----- 192 (430)
.. ..-+..++++|++|--+..+.. ...++.+.++|+|.+|.++..+ ..-+...+..+ +..|
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN--wEhl~~ifdHL-n~~P~k~h~ 451 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN--WEHLLHIFDHL-NLQPSKQHD 451 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh--HHHHHHHHHHh-hcCcccccC
Confidence 00 0112345558888875555433 2234558899999999987533 22222222221 1112
Q ss_pred -----------------CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccC-----------CCCceEEEE---EecCc
Q 014134 193 -----------------DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF-----------NRPNLFYEV---RYKDL 241 (430)
Q Consensus 193 -----------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~---~~~~~ 241 (430)
-+|.++||+--.+.....+..+...-...+..... ...+++... .....
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 12566666665554333222222111111111110 011111111 11222
Q ss_pred chhHHHHHHHHH----HhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc
Q 014134 242 LDDAYADLCSVL----KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (430)
Q Consensus 242 ~~~~~~~l~~~l----~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~ 317 (430)
.+.++.....-+ ......-++||.++.-.--.+.+++++.++....+|...+...-...-+.|-.|...+|+-|.-
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 334444333322 2223445899999999999999999999888888888888888788888999999999999976
Q ss_pred c--cccccccCceEEEEecCCCCHHHH---HHHhccCCCCCC----CceEEEeeCccchHHHHHHH
Q 014134 318 F--GMGIDRKDVRLVCHFNIPKSMEAF---YQESGRAGRDQL----PSKSLLYYGMDDRRRMEFIL 374 (430)
Q Consensus 318 ~--~~Gidi~~~~~vi~~~~p~s~~~~---~q~~GR~~R~g~----~g~~i~~~~~~~~~~~~~~~ 374 (430)
+ -+-.++.++.-||.|.+|..|.-| +.+.+|+.-.|+ .-.|.++++.-|.-.++.+.
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhh
Confidence 4 467899999999999999998765 566667654442 34688888888877666553
No 167
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.80 E-value=1.7e-07 Score=90.84 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=94.1
Q ss_pred CceEEEEeCccccHHHHHHHHHcCCC------------------cceeecCCCCHHHHHHHHHHhhcC--C-ceEEEEec
Q 014134 258 DTCAIVYCLERTTCDELSAYLSAGGI------------------SCAAYHAGLNDKARSSVLDDWISS--R-KQVVVATV 316 (430)
Q Consensus 258 ~~~~iVf~~s~~~~~~l~~~l~~~~~------------------~~~~~hg~~~~~~r~~~~~~f~~g--~-~~vLv~T~ 316 (430)
+.++|||..+....+.+.+.|.+..+ ....+.|..+..+|++.+++|++. - .-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 55788888888888888887776422 234678888999999999999863 2 35889999
Q ss_pred cccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHH
Q 014134 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (430)
Q Consensus 317 ~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~ 374 (430)
...-|||+-..+-+|.++..|++.--.|.+-|+-|.|+...|+++-.-.|...-+++.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIy 856 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIY 856 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHH
Confidence 9999999988989999999999999999999999999999999986655544444443
No 168
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.64 E-value=4e-07 Score=89.83 Aligned_cols=301 Identities=17% Similarity=0.094 Sum_probs=170.0
Q ss_pred HHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC--------CCeEEEEcchHHHHHHHHHHHHH-cCcceeEeCCCchH
Q 014134 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTM 114 (430)
Q Consensus 44 ~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~--------~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~~ 114 (430)
...+..+..+.-+++.+.||+|||.-+.-.+|+. ...+.+--|++..+.-+++++.. .+...........
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~v- 462 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNV- 462 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccc-
Confidence 3344455566778999999999997665555432 23466667888776666665533 1111000000000
Q ss_pred HHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCC
Q 014134 115 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 194 (430)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (430)
+ ........... ++.+|-+-+.++....-+ .+.++++||.|.---. -.-+...+..+....+..
T Consensus 463 --R--f~Sa~prpyg~--------i~fctvgvllr~~e~glr-g~sh~i~deiherdv~---~dfll~~lr~m~~ty~dl 526 (1282)
T KOG0921|consen 463 --R--FDSATPRPYGS--------IMFCTVGVLLRMMENGLR-GISHVIIDEIHERDVD---TDFVLIVLREMISTYRDL 526 (1282)
T ss_pred --c--ccccccccccc--------eeeeccchhhhhhhhccc-ccccccchhhhhhccc---hHHHHHHHHhhhccchhh
Confidence 0 00000001111 177787777776655433 3779999999985322 222334455666666777
Q ss_pred cEEEEEcCCCchhHHHHHHHh--------------------CCCCCeEEeccCCCCceE---------------------
Q 014134 195 PILALTATAAPKVQKDVMESL--------------------CLQNPLVLKSSFNRPNLF--------------------- 233 (430)
Q Consensus 195 ~~i~~SAT~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~--------------------- 233 (430)
..+++|||+.......++... ...... +........-.
T Consensus 527 ~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~-vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~ 605 (1282)
T KOG0921|consen 527 RVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQF-VPSEPSQKKRKKDDDEEDEEVDDKGRNMNILC 605 (1282)
T ss_pred hhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhc-cCCCcCccchhhcccccCchhhhccccccccc
Confidence 888899987664333222211 000000 00000000000
Q ss_pred ------------EEEEecCcchhHHHHHHHHHHhc-CCceEEEEeCccccHHHHHHHHHcC-------CCcceeecCCCC
Q 014134 234 ------------YEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAG-------GISCAAYHAGLN 293 (430)
Q Consensus 234 ------------~~~~~~~~~~~~~~~l~~~l~~~-~~~~~iVf~~s~~~~~~l~~~l~~~-------~~~~~~~hg~~~ 293 (430)
......+......+.+...+... -.+-+++|.+-=...-.|...+... ..++...|+..+
T Consensus 606 dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~ 685 (1282)
T KOG0921|consen 606 DPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLT 685 (1282)
T ss_pred ChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcc
Confidence 00000011112223333333322 2456888888777766666666543 245778899888
Q ss_pred HHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecC------------------CCCHHHHHHHhccCCCCCCC
Q 014134 294 DKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI------------------PKSMEAFYQESGRAGRDQLP 355 (430)
Q Consensus 294 ~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~------------------p~s~~~~~q~~GR~~R~g~~ 355 (430)
..+..++.+....|..+++++|.++...+.+-++..||..+. -.|..+.+||.||+||. +.
T Consensus 686 ~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~ 764 (1282)
T KOG0921|consen 686 SQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RP 764 (1282)
T ss_pred cHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cc
Confidence 888888888888899999999999999888877766664332 13677889999999986 56
Q ss_pred ceEEEeeC
Q 014134 356 SKSLLYYG 363 (430)
Q Consensus 356 g~~i~~~~ 363 (430)
|.|..+..
T Consensus 765 G~~f~lcs 772 (1282)
T KOG0921|consen 765 GFCFHLCS 772 (1282)
T ss_pred cccccccH
Confidence 77766654
No 169
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.58 E-value=3e-07 Score=76.41 Aligned_cols=113 Identities=16% Similarity=0.222 Sum_probs=76.7
Q ss_pred HHHHHhcCCceEEEEeCccccHHHHHHHHHcCCC--cceeecCCCCHHHHHHHHHHhhcCCceEEEEec--ccccccccc
Q 014134 250 CSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATV--AFGMGIDRK 325 (430)
Q Consensus 250 ~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~--~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~--~~~~Gidi~ 325 (430)
.++++.. ++.++||++|.+..+.+.+.++.... ...++.. +..++..+++.|++++-.||+++. .+++|+|+|
T Consensus 2 ~~l~~~~-~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 2 LELISAV-PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HHHHHCC-SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred hHHHhcC-CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 3455554 47899999999999999999987642 2222222 345788999999999999999998 999999999
Q ss_pred C--ceEEEEecCCC----CH--------------------------HHHHHHhccCCCCCCCceEEEeeCcc
Q 014134 326 D--VRLVCHFNIPK----SM--------------------------EAFYQESGRAGRDQLPSKSLLYYGMD 365 (430)
Q Consensus 326 ~--~~~vi~~~~p~----s~--------------------------~~~~q~~GR~~R~g~~g~~i~~~~~~ 365 (430)
+ ++.||...+|. ++ ....|.+||+-|...+--++++++..
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 6 78899988873 11 13378899999987655555555553
No 170
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.56 E-value=4.3e-07 Score=82.40 Aligned_cols=67 Identities=19% Similarity=0.246 Sum_probs=55.3
Q ss_pred cCCccchHHHHHHHHH----HHcCCCEEEEcCCCChHHHHhHHhhhc----CCC-----eEEEEcchHHHHHHHHHHHHH
Q 014134 34 FGHAQFRDKQLDAIQA----VLSGRDCFCLMPTGGGKSMCYQIPALA----KPG-----IVLVVSPLIALMENQVIGLKE 100 (430)
Q Consensus 34 ~g~~~~~~~Q~~~~~~----l~~~~~~lv~a~tGsGKT~~~~~~~l~----~~~-----~~lil~Pt~~L~~q~~~~~~~ 100 (430)
|.|. |+|.|.+.+.. +.+++++++.||||+|||++++.+++. .+. +++|.++|..+..|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 6776 59999995444 556889999999999999999988862 233 899999999999998888877
Q ss_pred c
Q 014134 101 K 101 (430)
Q Consensus 101 ~ 101 (430)
.
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 5
No 171
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.56 E-value=4.3e-07 Score=82.40 Aligned_cols=67 Identities=19% Similarity=0.246 Sum_probs=55.3
Q ss_pred cCCccchHHHHHHHHH----HHcCCCEEEEcCCCChHHHHhHHhhhc----CCC-----eEEEEcchHHHHHHHHHHHHH
Q 014134 34 FGHAQFRDKQLDAIQA----VLSGRDCFCLMPTGGGKSMCYQIPALA----KPG-----IVLVVSPLIALMENQVIGLKE 100 (430)
Q Consensus 34 ~g~~~~~~~Q~~~~~~----l~~~~~~lv~a~tGsGKT~~~~~~~l~----~~~-----~~lil~Pt~~L~~q~~~~~~~ 100 (430)
|.|. |+|.|.+.+.. +.+++++++.||||+|||++++.+++. .+. +++|.++|..+..|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 6776 59999995444 556889999999999999999988862 233 899999999999998888877
Q ss_pred c
Q 014134 101 K 101 (430)
Q Consensus 101 ~ 101 (430)
.
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 5
No 172
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.53 E-value=8.4e-09 Score=103.00 Aligned_cols=272 Identities=13% Similarity=0.133 Sum_probs=144.4
Q ss_pred CCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHc-CCCEEEEcCCCChHHHHhHHhhhc-----CCCeEEEEcchHHHH
Q 014134 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALM 91 (430)
Q Consensus 18 ~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~-~~~~lv~a~tGsGKT~~~~~~~l~-----~~~~~lil~Pt~~L~ 91 (430)
.+++........+...+. .+.|.|.+.+..+.. ..++++-+|||+|||.+|.+++.. .+.++++++|.++|+
T Consensus 909 ~plp~~~L~~~~~e~~~~--~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalv 986 (1230)
T KOG0952|consen 909 RPLPSSALKNVVFEALYK--YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALV 986 (1230)
T ss_pred CCCcchhhccccHHHhhc--ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhh
Confidence 334444333334443323 456677776655543 468999999999999999887752 267899999999999
Q ss_pred HHHHHHHHHc----CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHH----hhhcCCccEEE
Q 014134 92 ENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK----IHSRGLLNLVA 163 (430)
Q Consensus 92 ~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~----~~~~~~~~~lV 163 (430)
....+.+... |.+....++.... ++.-+..+..+|+||++.....+ ......++++|
T Consensus 987 ker~~Dw~~r~~~~g~k~ie~tgd~~p---------------d~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv 1051 (1230)
T KOG0952|consen 987 KERSDDWSKRDELPGIKVIELTGDVTP---------------DVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIV 1051 (1230)
T ss_pred cccccchhhhcccCCceeEeccCccCC---------------ChhheecCceEEcccccccCccccccchhhhcccccee
Confidence 9877777663 2222222222211 11222223338888886665533 33355578899
Q ss_pred EecCcccccc-CCCcHHHHHHHHHHHhhC-CCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCc
Q 014134 164 IDEAHCISSW-GHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL 241 (430)
Q Consensus 164 iDE~h~~~~~-~~~~~~~~~~l~~~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (430)
+||.|.+.+. |+-+.-.......+-... +..+.+++|--+.+. .++.+|++..+..-+.....+..+...+...+.
T Consensus 1052 ~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na--~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp~ 1129 (1230)
T KOG0952|consen 1052 LDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANA--NDLADWLNIKDMYNFRPSVRPVPLEVHIDGFPG 1129 (1230)
T ss_pred ecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhcc--HHHHHHhCCCCcCCCCcccccCCceEeecCCCc
Confidence 9999998763 332211111111111111 245566776666555 667788877665111112222222222211111
Q ss_pred ------chhHHHHHHHHHH-hcCCceEEEEeCccccHHHHHHHHH----cCCCcceeecCCCCHHHHHHHHHHhhcCCce
Q 014134 242 ------LDDAYADLCSVLK-ANGDTCAIVYCLERTTCDELSAYLS----AGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (430)
Q Consensus 242 ------~~~~~~~l~~~l~-~~~~~~~iVf~~s~~~~~~l~~~l~----~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~ 310 (430)
......--...++ ..+..+++||+.++++...-+..|- ...-+...++.+ ..+-+.++...++...+
T Consensus 1130 ~~~cprm~smnkpa~qaik~~sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1130 QHYCPRMMSMNKPAFQAIKTHSPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred hhcchhhhhcccHHHHHHhcCCCCCceEEEeecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccchh
Confidence 0011111222333 3467899999998876554443332 222233344433 45555555555554433
No 173
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.46 E-value=4.6e-06 Score=85.37 Aligned_cols=72 Identities=15% Similarity=0.122 Sum_probs=56.0
Q ss_pred CceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCC--CCc-------e-EEEeeCccchHHHHHHHHhc
Q 014134 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ--LPS-------K-SLLYYGMDDRRRMEFILSKN 377 (430)
Q Consensus 308 ~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g--~~g-------~-~i~~~~~~~~~~~~~~~~~~ 377 (430)
..+.+++-+++.+|.|-|++-+++.+.-..|...-.|.+||.-|.- +.| . -.++.+....+....+.++.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5789999999999999999999999998899999999999999842 112 2 22344555667777777666
Q ss_pred cC
Q 014134 378 QS 379 (430)
Q Consensus 378 ~~ 379 (430)
..
T Consensus 581 ~~ 582 (986)
T PRK15483 581 NS 582 (986)
T ss_pred Hh
Confidence 44
No 174
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.46 E-value=1.9e-06 Score=76.34 Aligned_cols=157 Identities=20% Similarity=0.138 Sum_probs=94.3
Q ss_pred cchHHHHHHHHHHH----------cCCCEEEEcCCCChHHHHhHHhhh---cC-CCeEEEEcchHHHHHHHHHHHHHcCc
Q 014134 38 QFRDKQLDAIQAVL----------SGRDCFCLMPTGGGKSMCYQIPAL---AK-PGIVLVVSPLIALMENQVIGLKEKGI 103 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~----------~~~~~lv~a~tGsGKT~~~~~~~l---~~-~~~~lil~Pt~~L~~q~~~~~~~~~~ 103 (430)
.++..|.+++-..- .+..+++-..||.||--...-.++ .+ ..++|+++.+..|-....+.++.+|.
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~ 116 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGA 116 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCC
Confidence 46788888765542 234678888999999855433333 23 45699999999999999999998765
Q ss_pred ceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChh--------------HHHHHHHhhhcCCccEEEEecCcc
Q 014134 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG--------------FMSKLKKIHSRGLLNLVAIDEAHC 169 (430)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~--------------~~~~~~~~~~~~~~~~lViDE~h~ 169 (430)
............ +....... -.+ +++|.. ++..+......+.=.+|||||||.
T Consensus 117 ~~i~v~~l~~~~-----~~~~~~~~--~Gv------lF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ 183 (303)
T PF13872_consen 117 DNIPVHPLNKFK-----YGDIIRLK--EGV------LFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHK 183 (303)
T ss_pred Ccccceechhhc-----cCcCCCCC--CCc------cchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchh
Confidence 532222111110 00111111 122 444443 333333333222234899999999
Q ss_pred ccccCCC---cHHHHHHHHHHHhhCCCCcEEEEEcCCCchh
Q 014134 170 ISSWGHD---FRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (430)
Q Consensus 170 ~~~~~~~---~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~ 207 (430)
..+.... -...-.....+.+.+|+.+++.+|||-..+.
T Consensus 184 akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep 224 (303)
T PF13872_consen 184 AKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASEP 224 (303)
T ss_pred cCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCCC
Confidence 8664321 1112244566778899999999999977654
No 175
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.43 E-value=2.9e-06 Score=75.00 Aligned_cols=123 Identities=21% Similarity=0.266 Sum_probs=78.1
Q ss_pred HhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh---cCCCeEEEEcchHHHHHHHHHHHHH----cCcc
Q 014134 32 WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE----KGIA 104 (430)
Q Consensus 32 ~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt~~L~~q~~~~~~~----~~~~ 104 (430)
+.+|+ .|++.|.-+.=.+..|+ ++...||=|||++..+++. -.+..|-|++.+..||..-++++.. +|+.
T Consensus 72 r~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGls 148 (266)
T PF07517_consen 72 RTLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLS 148 (266)
T ss_dssp HHTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--
T ss_pred HHcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhc
Confidence 44565 48888888776665554 9999999999998877664 3478899999999999976666554 6888
Q ss_pred eeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHH-H-HHHh-------hhcCCccEEEEecCcccc
Q 014134 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS-K-LKKI-------HSRGLLNLVAIDEAHCIS 171 (430)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~-~-~~~~-------~~~~~~~~lViDE~h~~~ 171 (430)
+...........+...+. .+| +-+|...+. + +... .....+.++|+||+|.++
T Consensus 149 v~~~~~~~~~~~r~~~Y~--------~dI------~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 149 VGIITSDMSSEERREAYA--------ADI------VYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp EEEEETTTEHHHHHHHHH--------SSE------EEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred cccCccccCHHHHHHHHh--------Ccc------cccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 888777666544444443 334 445544211 1 2111 113458899999999874
No 176
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.40 E-value=1e-06 Score=75.21 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=43.2
Q ss_pred cchHHHHHHHHHHHcCC--CEEEEcCCCChHHHHhHHh---hhcCCCeEEEEcchHHHHHHHHHH
Q 014134 38 QFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIG 97 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~~--~~lv~a~tGsGKT~~~~~~---~l~~~~~~lil~Pt~~L~~q~~~~ 97 (430)
+|++-|.+++..++.++ -.+++||.|||||.+.... +...+.++++++||...+....+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHh
Confidence 47899999999997654 4778899999999754321 224578999999999888875555
No 177
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.28 E-value=6.8e-05 Score=74.45 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=58.8
Q ss_pred CCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCC--CCCceE-----------EEeeCccchHHHHHH
Q 014134 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD--QLPSKS-----------LLYYGMDDRRRMEFI 373 (430)
Q Consensus 307 g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~--g~~g~~-----------i~~~~~~~~~~~~~~ 373 (430)
...+.+++-.++-+|+|-|+|=.++-.....|..+=.|-+||.-|- +..|.- .+++..++...+..+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 4578999999999999999999999999999999999999999994 233332 345666677777777
Q ss_pred HHhccCC
Q 014134 374 LSKNQSK 380 (430)
Q Consensus 374 ~~~~~~~ 380 (430)
.++....
T Consensus 562 qkEI~~~ 568 (985)
T COG3587 562 QKEINDE 568 (985)
T ss_pred HHHHHHh
Confidence 6666443
No 178
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.28 E-value=1e-05 Score=82.69 Aligned_cols=61 Identities=15% Similarity=0.077 Sum_probs=38.3
Q ss_pred cccChhH-HHHH-HHhhhcCCccEEEEecCccccccCCCcHHHHHHHHH-HHhhCCCCcEEEEEcCCCc
Q 014134 140 LTATPGF-MSKL-KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS-LRNYLPDVPILALTATAAP 205 (430)
Q Consensus 140 ~v~T~~~-~~~~-~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~-~~~~~~~~~~i~~SAT~~~ 205 (430)
++.||.. ..++ ....+...+..+|+||||++.... . . ..+.+ +....+..-+.+|||+|..
T Consensus 11 ~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~-~-e---aFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 11 FSITSRILVVDLLTGIIPPELITGILVLRADRIIESS-Q-E---AFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred EEEechhhHhHHhcCCCCHHHccEEEEeecccccccc-c-H---HHHHHHHHHhCCCcceEEecCCCcc
Confidence 6667763 3344 345566778899999999986422 1 1 22223 3333344559999999876
No 179
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.12 E-value=9e-07 Score=87.22 Aligned_cols=276 Identities=19% Similarity=0.147 Sum_probs=152.6
Q ss_pred ccchHHHHHHHHHHH----cCCCEEEEcCCCChHHHHhH--Hhhh----cCCCeEEEEcchHHHHHHHHHHHHHcCccee
Q 014134 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQ--IPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~----~~~~~lv~a~tGsGKT~~~~--~~~l----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 106 (430)
..+.++|-+++..+. .+.+.++..+.|.|||...+ ++.+ ......|+++|....+.. -..+........
T Consensus 294 g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nw-e~e~~~wap~~~ 372 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNW-EREFELWAPSFY 372 (696)
T ss_pred ccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCC-CCchhccCCCcc
Confidence 357789999888876 35789999999999996543 2222 233456777877665551 222222111111
Q ss_pred EeCCCchHHHHHHHHhhhhcCCCc------------eeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccC
Q 014134 107 FLSSTQTMQVKTKIYEDLDSGKPS------------LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (430)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~ 174 (430)
+....+....+..+.+........ ..--...+....++.+...-......-.++++|+||+|++.+..
T Consensus 373 vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~livde~~rlkn~~ 452 (696)
T KOG0383|consen 373 VVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLIVDEAHRLKNKQ 452 (696)
T ss_pred cccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcceeEeechhhcccch
Confidence 111222212111111111110000 00000111123333322221222222337799999999997743
Q ss_pred CCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCC--------------------------
Q 014134 175 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-------------------------- 228 (430)
Q Consensus 175 ~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 228 (430)
....+....++....++++.|+-.+..+.+...+....+..+.....
T Consensus 453 -------s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~~~~~~~~~l~~l~~p~~l 525 (696)
T KOG0383|consen 453 -------SKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDISCEEQIKKLHLLLCPHML 525 (696)
T ss_pred -------hhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchhhHHHHHHhhccccCchhh
Confidence 33444555555666889999988877777777665544433321000
Q ss_pred -----------CCce--EEEEEe-----------------------------------------------cCcch-----
Q 014134 229 -----------RPNL--FYEVRY-----------------------------------------------KDLLD----- 243 (430)
Q Consensus 229 -----------~~~~--~~~~~~-----------------------------------------------~~~~~----- 243 (430)
.... ...+.. .....
T Consensus 526 rr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~~~~~~s~~n~~mel~K~~~hpy~~~~~e~~~~~~~~ 605 (696)
T KOG0383|consen 526 RRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLAGVHQYSLLNIVMELRKQCNHPYLSPLEEPLEENGEY 605 (696)
T ss_pred hhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhhcchhHHHHHHHHHHHHhhcCcccCccccccccchHH
Confidence 0000 000000 00000
Q ss_pred ---------hHHHHHHHHHHh--cCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhc---CCc
Q 014134 244 ---------DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS---SRK 309 (430)
Q Consensus 244 ---------~~~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~---g~~ 309 (430)
.++..|...++. .++.+++||..-....+-+.+.+...+ ....+.|..+..+|+..+++|+. .+.
T Consensus 606 ~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~ 684 (696)
T KOG0383|consen 606 LGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQF 684 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccce
Confidence 222333333332 257899999999999999999998888 88899999999999999999993 345
Q ss_pred eEEEEecccccc
Q 014134 310 QVVVATVAFGMG 321 (430)
Q Consensus 310 ~vLv~T~~~~~G 321 (430)
-.|.+|...+.|
T Consensus 685 cfllstra~g~g 696 (696)
T KOG0383|consen 685 CFLLSTRAGGLG 696 (696)
T ss_pred EEEeecccccCC
Confidence 578888876654
No 180
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.10 E-value=8e-06 Score=72.20 Aligned_cols=63 Identities=33% Similarity=0.437 Sum_probs=48.8
Q ss_pred cchHHHHHHHHHHHcCCC-EEEEcCCCChHHHHh--HHhhh---------cCCCeEEEEcchHHHHHHHHHHHHH
Q 014134 38 QFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMCY--QIPAL---------AKPGIVLVVSPLIALMENQVIGLKE 100 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~~~-~lv~a~tGsGKT~~~--~~~~l---------~~~~~~lil~Pt~~L~~q~~~~~~~ 100 (430)
++++.|.+|+..+++... .+++||+|||||.+. ++..+ ..+.++|+++|+..-+++..+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 478899999999999998 999999999999433 23333 4578899999999999999988877
No 181
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.06 E-value=1.3e-05 Score=68.08 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=36.5
Q ss_pred CccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc-----CCCeEEEEcchHHH
Q 014134 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIAL 90 (430)
Q Consensus 36 ~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~-----~~~~~lil~Pt~~L 90 (430)
+...++.|..++..+.+..-+++.||.|||||+.++..+++ .-.+++|+-|..+.
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA 61 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence 34578899999999998888999999999999887766542 23578888887654
No 182
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.99 E-value=1.2e-05 Score=76.73 Aligned_cols=63 Identities=21% Similarity=0.210 Sum_probs=51.7
Q ss_pred ccchHHHHHHHHHHHcCC-CEEEEcCCCChHHHHhHHh---hhcCCCeEEEEcchHHHHHHHHHHHH
Q 014134 37 AQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLK 99 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~~~~-~~lv~a~tGsGKT~~~~~~---~l~~~~~~lil~Pt~~L~~q~~~~~~ 99 (430)
..+.+-|.+|+....+.+ -.+++||+|||||.+.... ++.++.++|+.+||..-++-+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 368888999999988885 4679999999999765433 35678999999999999998888654
No 183
>PF13245 AAA_19: Part of AAA domain
Probab=97.98 E-value=2.1e-05 Score=55.44 Aligned_cols=53 Identities=28% Similarity=0.323 Sum_probs=37.1
Q ss_pred HHHHHHcCCC-EEEEcCCCChHHHHhHHh---hhcC----CCeEEEEcchHHHHHHHHHHH
Q 014134 46 AIQAVLSGRD-CFCLMPTGGGKSMCYQIP---ALAK----PGIVLVVSPLIALMENQVIGL 98 (430)
Q Consensus 46 ~~~~l~~~~~-~lv~a~tGsGKT~~~~~~---~l~~----~~~~lil~Pt~~L~~q~~~~~ 98 (430)
++...+.+.+ +++.||+|||||....-. .+.. +.++++++|++..++++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 3443333444 556999999999554322 2222 678999999999999988887
No 184
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.94 E-value=8.2e-06 Score=81.49 Aligned_cols=101 Identities=13% Similarity=0.025 Sum_probs=86.3
Q ss_pred eEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCC-ce-EEEEeccccccccccCceEEEEecCCC
Q 014134 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-KQ-VVVATVAFGMGIDRKDVRLVCHFNIPK 337 (430)
Q Consensus 260 ~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~-~~-vLv~T~~~~~Gidi~~~~~vi~~~~p~ 337 (430)
+++||+.-...+..+.-.+...++....+-|.|+...|.+.+..|.++. .. .+++......|+|+-.+.+|+..|+-|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 7888887777777777777777788888999999999999999999544 33 456678889999999999999999999
Q ss_pred CHHHHHHHhccCCCCCCCceEEE
Q 014134 338 SMEAFYQESGRAGRDQLPSKSLL 360 (430)
Q Consensus 338 s~~~~~q~~GR~~R~g~~g~~i~ 360 (430)
|+..-.|.+-|+.|-|+.-.+.+
T Consensus 621 np~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred ChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999998776655
No 185
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.93 E-value=0.00011 Score=75.20 Aligned_cols=65 Identities=12% Similarity=0.078 Sum_probs=48.8
Q ss_pred HHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhH--HhhhcC-C--CeEEEEcchHHHHHHHH
Q 014134 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALAK-P--GIVLVVSPLIALMENQV 95 (430)
Q Consensus 30 l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~--~~~l~~-~--~~~lil~Pt~~L~~q~~ 95 (430)
.....++ .+++.|.+|+..+..++-+++.|++|||||.+.. +.++.. + ..+++++||-.-+..+.
T Consensus 316 ~~~~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 316 VEKKLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred HHHhcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHH
Confidence 3333454 5999999999999988899999999999997542 333332 3 57888999987776543
No 186
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.91 E-value=8.5e-05 Score=74.07 Aligned_cols=77 Identities=21% Similarity=0.124 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCc-cchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhH--Hhhh-c----CCCeEEEEcchHHHHHHHH
Q 014134 24 EALVKLLRWHFGHA-QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPAL-A----KPGIVLVVSPLIALMENQV 95 (430)
Q Consensus 24 ~~~~~~l~~~~g~~-~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~--~~~l-~----~~~~~lil~Pt~~L~~q~~ 95 (430)
..+.+.|.+.|+.. ...++|+.|+...+.++-.++.|++|||||.+.. +..+ + ...++++++||..-+..+.
T Consensus 137 ~~~~~~l~~lf~~~~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~ 216 (615)
T PRK10875 137 ALLRQTLDALFGPVTDEVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLT 216 (615)
T ss_pred HHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHH
Confidence 34555566655543 2358999999999999999999999999996642 3333 1 1347888999998888777
Q ss_pred HHHHH
Q 014134 96 IGLKE 100 (430)
Q Consensus 96 ~~~~~ 100 (430)
+.+..
T Consensus 217 e~~~~ 221 (615)
T PRK10875 217 ESLGK 221 (615)
T ss_pred HHHHh
Confidence 66543
No 187
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=97.91 E-value=0.00083 Score=66.36 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=55.1
Q ss_pred HHhhcCCceEEEEeccccccccccCc--------eEEEEecCCCCHHHHHHHhccCCCCCC-CceEEEeeCc---cchHH
Q 014134 302 DDWISSRKQVVVATVAFGMGIDRKDV--------RLVCHFNIPKSMEAFYQESGRAGRDQL-PSKSLLYYGM---DDRRR 369 (430)
Q Consensus 302 ~~f~~g~~~vLv~T~~~~~Gidi~~~--------~~vi~~~~p~s~~~~~q~~GR~~R~g~-~g~~i~~~~~---~~~~~ 369 (430)
++|.+|+..|-|.+.+++-||-+..- .+=|...+|||.+.-+|..||++|.++ .+.-++|+-. .+...
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErRF 930 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERRF 930 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchHH
Confidence 56778888888888999999987643 344578899999999999999999987 3444554422 25555
Q ss_pred HHHHHHhc
Q 014134 370 MEFILSKN 377 (430)
Q Consensus 370 ~~~~~~~~ 377 (430)
...+.+.+
T Consensus 931 AS~VAKRL 938 (1300)
T KOG1513|consen 931 ASIVAKRL 938 (1300)
T ss_pred HHHHHHHH
Confidence 55554444
No 188
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.90 E-value=1.8e-05 Score=76.08 Aligned_cols=82 Identities=20% Similarity=0.220 Sum_probs=67.6
Q ss_pred HHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh----cCCCeEEEEcchHHHHHHHHHHHHHc
Q 014134 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKEK 101 (430)
Q Consensus 26 ~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l----~~~~~~lil~Pt~~L~~q~~~~~~~~ 101 (430)
+.+.+.. +|+.+++.-|..|+.+++++.=.++++|+|||||.+....+. ....++|+++|+..-++|.++.+.+.
T Consensus 399 LP~~~s~-~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 399 LPRRFSV-PNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred CchhhcC-CCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhc
Confidence 3345665 799999999999999999999999999999999966543322 34788999999999999999999998
Q ss_pred CcceeEe
Q 014134 102 GIAGEFL 108 (430)
Q Consensus 102 ~~~~~~~ 108 (430)
|+.+...
T Consensus 478 gLKVvRl 484 (935)
T KOG1802|consen 478 GLKVVRL 484 (935)
T ss_pred CceEeee
Confidence 8765543
No 189
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.86 E-value=5.4e-05 Score=71.16 Aligned_cols=46 Identities=20% Similarity=0.039 Sum_probs=36.3
Q ss_pred CEEEEcCCCChHHHHhHHhh--h---cCCCeEEEEcchHHHHHHHHHHHHH
Q 014134 55 DCFCLMPTGGGKSMCYQIPA--L---AKPGIVLVVSPLIALMENQVIGLKE 100 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~~~--l---~~~~~~lil~Pt~~L~~q~~~~~~~ 100 (430)
-++|.|.+|||||+.++-.+ + ..+..++++++...|.....+.+..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhh
Confidence 36899999999998775332 2 3477899999999999887777765
No 190
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.84 E-value=0.00016 Score=72.05 Aligned_cols=61 Identities=16% Similarity=0.108 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHHHHhH--Hhhhc---C---CCeEEEEcchHHHHHHHHHHHHH
Q 014134 40 RDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA---K---PGIVLVVSPLIALMENQVIGLKE 100 (430)
Q Consensus 40 ~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~--~~~l~---~---~~~~lil~Pt~~L~~q~~~~~~~ 100 (430)
.++|..|+..++.++-.++.|++|||||.+.. +..+. . ..++++.+||-.-+..+.+....
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 37999999999999999999999999997643 33231 1 15799999998887776665544
No 191
>PRK10536 hypothetical protein; Provisional
Probab=97.75 E-value=0.00027 Score=61.80 Aligned_cols=55 Identities=20% Similarity=0.203 Sum_probs=40.7
Q ss_pred CCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh----cCC-CeEEEEcchHH
Q 014134 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKP-GIVLVVSPLIA 89 (430)
Q Consensus 35 g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l----~~~-~~~lil~Pt~~ 89 (430)
++...+..|...+..+.++..+++.||+|||||+.+....+ +.. .++++.=|+.+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCC
Confidence 56678899999999998888899999999999977654433 333 34555556543
No 192
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.74 E-value=0.00035 Score=55.96 Aligned_cols=77 Identities=22% Similarity=0.292 Sum_probs=53.9
Q ss_pred eecCCCCHHHHHHHHHHhhcCC-ceEEEEeccccccccccC--ceEEEEecCCC----C---------------------
Q 014134 287 AYHAGLNDKARSSVLDDWISSR-KQVVVATVAFGMGIDRKD--VRLVCHFNIPK----S--------------------- 338 (430)
Q Consensus 287 ~~hg~~~~~~r~~~~~~f~~g~-~~vLv~T~~~~~Gidi~~--~~~vi~~~~p~----s--------------------- 338 (430)
++.-+.+..+...+++.|++.. ..||+++..+++|+|+|+ ++.||...+|. +
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~ 105 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDF 105 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhH
Confidence 3443445556788899998654 379999988999999997 46888877763 1
Q ss_pred ------HHHHHHHhccCCCCCCCceEEEeeC
Q 014134 339 ------MEAFYQESGRAGRDQLPSKSLLYYG 363 (430)
Q Consensus 339 ------~~~~~q~~GR~~R~g~~g~~i~~~~ 363 (430)
...+.|.+||+-|...+--++++++
T Consensus 106 ~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 106 VSLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 1234788899999865433444444
No 193
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.69 E-value=0.00034 Score=56.15 Aligned_cols=93 Identities=24% Similarity=0.341 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCC---cceeecCCCCHHHHHHHHHHhhcCCc---eEEEEecc--ccccccccC--ceEEEEecCCC---
Q 014134 271 CDELSAYLSAGGI---SCAAYHAGLNDKARSSVLDDWISSRK---QVVVATVA--FGMGIDRKD--VRLVCHFNIPK--- 337 (430)
Q Consensus 271 ~~~l~~~l~~~~~---~~~~~hg~~~~~~r~~~~~~f~~g~~---~vLv~T~~--~~~Gidi~~--~~~vi~~~~p~--- 337 (430)
.+.+++.+++.+. ...++.-+....+...+++.|++... .||+++.. +++|||+|+ ++.||...+|.
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 3455566655432 12222222233345778888886543 69998887 999999998 57888888763
Q ss_pred -C---------------------------HHHHHHHhccCCCCCCCceEEEeeC
Q 014134 338 -S---------------------------MEAFYQESGRAGRDQLPSKSLLYYG 363 (430)
Q Consensus 338 -s---------------------------~~~~~q~~GR~~R~g~~g~~i~~~~ 363 (430)
+ .....|.+||+-|..+.--++++++
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1 1234788999999875544555544
No 194
>PRK08181 transposase; Validated
Probab=97.62 E-value=0.0011 Score=59.16 Aligned_cols=55 Identities=25% Similarity=0.291 Sum_probs=35.0
Q ss_pred chHHHHHHHH----HHHcCCCEEEEcCCCChHHHHhH-H--hhhcCCCeEEEEcchHHHHHHH
Q 014134 39 FRDKQLDAIQ----AVLSGRDCFCLMPTGGGKSMCYQ-I--PALAKPGIVLVVSPLIALMENQ 94 (430)
Q Consensus 39 ~~~~Q~~~~~----~l~~~~~~lv~a~tGsGKT~~~~-~--~~l~~~~~~lil~Pt~~L~~q~ 94 (430)
+...|..++. .+..++++++.||+|+|||..+. + .++.++..++++ +..+|..+.
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~-~~~~L~~~l 149 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT-RTTDLVQKL 149 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee-eHHHHHHHH
Confidence 3456666553 34467899999999999994332 2 224556566554 456666654
No 195
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.55 E-value=0.00047 Score=61.12 Aligned_cols=79 Identities=19% Similarity=0.256 Sum_probs=61.5
Q ss_pred HHHHHhhcCCceEEEEeccccccccccC--------ceEEEEecCCCCHHHHHHHhccCCCCCC-CceEEEeeCcc---c
Q 014134 299 SVLDDWISSRKQVVVATVAFGMGIDRKD--------VRLVCHFNIPKSMEAFYQESGRAGRDQL-PSKSLLYYGMD---D 366 (430)
Q Consensus 299 ~~~~~f~~g~~~vLv~T~~~~~Gidi~~--------~~~vi~~~~p~s~~~~~q~~GR~~R~g~-~g~~i~~~~~~---~ 366 (430)
...+.|.+|+.+|+|.+++.+.|+.++. -.+-|...+|||....+|..||++|.|+ ....+.++..+ |
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4567899999999999999999998873 3567889999999999999999999998 34555554433 4
Q ss_pred hHHHHHHHHhc
Q 014134 367 RRRMEFILSKN 377 (430)
Q Consensus 367 ~~~~~~~~~~~ 377 (430)
......+.+.+
T Consensus 132 ~Rfas~va~rL 142 (278)
T PF13871_consen 132 RRFASTVARRL 142 (278)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 196
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.54 E-value=0.00045 Score=54.82 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=13.7
Q ss_pred cCCCEEEEcCCCChHHHHhHH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~~ 72 (430)
+++.+++.||+|+|||.....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHH
Confidence 346789999999999977643
No 197
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.54 E-value=0.00034 Score=70.59 Aligned_cols=67 Identities=21% Similarity=0.180 Sum_probs=54.9
Q ss_pred ccchHHHHHHHHHHHcC-CCEEEEcCCCChHHHHhHH---hhhcCCCeEEEEcchHHHHHHHHHHHHHcCc
Q 014134 37 AQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~~~-~~~lv~a~tGsGKT~~~~~---~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 103 (430)
..+++.|.+|+..++.. ...++.||+|||||.+..- .+++.+.++++++||..-++++.+.+...+.
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~ 226 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQ 226 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCC
Confidence 35799999999999877 6788999999999965442 2345678999999999999999999887433
No 198
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.51 E-value=0.001 Score=67.26 Aligned_cols=142 Identities=23% Similarity=0.180 Sum_probs=87.6
Q ss_pred CCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCC-CEEEEcCCCChHHHHhH--Hh-hhcCCCeEEEEcchHHHHHH
Q 014134 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQ--IP-ALAKPGIVLVVSPLIALMEN 93 (430)
Q Consensus 18 ~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~-~~lv~a~tGsGKT~~~~--~~-~l~~~~~~lil~Pt~~L~~q 93 (430)
.+..+.|...+.. +.+++.-|++|+..++..+ ..++.|=+|||||.+.. +- ++..+.++|+.+-|..-++-
T Consensus 654 ~~~~~~p~~~~~~-----~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDN 728 (1100)
T KOG1805|consen 654 LSKVLIPKIKKII-----LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDN 728 (1100)
T ss_pred cccccCchhhHHH-----HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHH
Confidence 3445555554431 2368889999999888775 57899999999996543 32 34668899999999999998
Q ss_pred HHHHHHHcCcceeEeCCCchHHHH-----------HHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEE
Q 014134 94 QVIGLKEKGIAGEFLSSTQTMQVK-----------TKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLV 162 (430)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~l 162 (430)
+.-.++.+++....+-.....-.. ..-+..+...-.+..++.+|+.=|.-|-+ ..+.+++.
T Consensus 729 ILiKL~~~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf--------~~R~FD~c 800 (1100)
T KOG1805|consen 729 ILIKLKGFGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF--------VNRQFDYC 800 (1100)
T ss_pred HHHHHhccCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh--------hccccCEE
Confidence 988888877664322222111000 01122222333334454444443333322 23348899
Q ss_pred EEecCccccc
Q 014134 163 AIDEAHCISS 172 (430)
Q Consensus 163 ViDE~h~~~~ 172 (430)
|+|||-.+..
T Consensus 801 IiDEASQI~l 810 (1100)
T KOG1805|consen 801 IIDEASQILL 810 (1100)
T ss_pred EEcccccccc
Confidence 9999998753
No 199
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.43 E-value=0.0016 Score=52.52 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=22.5
Q ss_pred CCCEEEEcCCCChHHHHhHHhhh---cCCCeEEEEcch
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPL 87 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt 87 (430)
++.+++.||+|+|||......+- ..+..++++...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehh
Confidence 57899999999999965543322 224455555443
No 200
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.42 E-value=0.00031 Score=70.20 Aligned_cols=70 Identities=26% Similarity=0.264 Sum_probs=53.2
Q ss_pred cCCccchHHHHHHHHHHH----cCCCEEEEcCCCChHHHHhHHhhhc-----------------C---------------
Q 014134 34 FGHAQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPALA-----------------K--------------- 77 (430)
Q Consensus 34 ~g~~~~~~~Q~~~~~~l~----~~~~~lv~a~tGsGKT~~~~~~~l~-----------------~--------------- 77 (430)
|.|. |++.|...+..++ +..+.++.+|||+|||++.+...+. +
T Consensus 18 fP~q-pY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~ 96 (945)
T KOG1132|consen 18 FPFQ-PYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEK 96 (945)
T ss_pred ccCC-cchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCc
Confidence 5554 7999988766655 4578999999999999887755441 0
Q ss_pred -------------CCeEEEEcchHHHHHHHHHHHHHcCcc
Q 014134 78 -------------PGIVLVVSPLIALMENQVIGLKEKGIA 104 (430)
Q Consensus 78 -------------~~~~lil~Pt~~L~~q~~~~~~~~~~~ 104 (430)
.++++|-.-|..-..|+.++++..+..
T Consensus 97 s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~ 136 (945)
T KOG1132|consen 97 SEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR 136 (945)
T ss_pred hhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCC
Confidence 346778788888889999999986554
No 201
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.39 E-value=0.00067 Score=64.00 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=42.1
Q ss_pred cchHHHHHHHHHH------HcCCCEEEEcCCCChHHHHhHH--hhh-cCCCeEEEEcchHHHHHH
Q 014134 38 QFRDKQLDAIQAV------LSGRDCFCLMPTGGGKSMCYQI--PAL-AKPGIVLVVSPLIALMEN 93 (430)
Q Consensus 38 ~~~~~Q~~~~~~l------~~~~~~lv~a~tGsGKT~~~~~--~~l-~~~~~~lil~Pt~~L~~q 93 (430)
+|++-|++++..+ ..+.++++.|+-|||||..+-. ..+ ..+..+++++||-.-|..
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~ 65 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFN 65 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHh
Confidence 4678899998888 5678999999999999976532 222 235678999999766543
No 202
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.37 E-value=0.0089 Score=56.38 Aligned_cols=55 Identities=18% Similarity=0.123 Sum_probs=36.1
Q ss_pred CCccEEEEecCccccccCCCcHHHHHHHHHHHhhCC-C-CcEEEEEcCCCchhHHHHHHHh
Q 014134 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-D-VPILALTATAAPKVQKDVMESL 215 (430)
Q Consensus 157 ~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~-~~~i~~SAT~~~~~~~~~~~~~ 215 (430)
...++|++|++.+... ....+..+..+..... . ...+.+|||........+...+
T Consensus 253 ~~~DlVLIDTaGr~~~----~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 253 KDFDLVLVDTIGKSPK----DFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred CCCCEEEEcCCCCCcc----CHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 4578999999998642 1212445555555432 3 4589999999987776666554
No 203
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.34 E-value=0.00036 Score=63.07 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=45.9
Q ss_pred HhcCCccchHHHHHHHHHHHcCC--CEEEEcCCCChHHHHhHHhhhcC------CCeEEEEcchHHHH
Q 014134 32 WHFGHAQFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLIALM 91 (430)
Q Consensus 32 ~~~g~~~~~~~Q~~~~~~l~~~~--~~lv~a~tGsGKT~~~~~~~l~~------~~~~lil~Pt~~L~ 91 (430)
+.+|+...+..|.-|+..++... =+.+.++.|||||+-++.+.+.+ -.++|+.=|+..+.
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG 289 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVG 289 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcc
Confidence 45899988889999999998764 46688999999998888777643 34566666765543
No 204
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.33 E-value=0.0013 Score=60.52 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=24.9
Q ss_pred EEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCch
Q 014134 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (430)
Q Consensus 161 ~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~ 206 (430)
++++||+|++.... -..++....+-.+++.-||..+.
T Consensus 107 iLflDEIHRfnK~Q---------QD~lLp~vE~G~iilIGATTENP 143 (436)
T COG2256 107 ILFLDEIHRFNKAQ---------QDALLPHVENGTIILIGATTENP 143 (436)
T ss_pred EEEEehhhhcChhh---------hhhhhhhhcCCeEEEEeccCCCC
Confidence 79999999975422 12233344466799999997664
No 205
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.33 E-value=0.00043 Score=64.14 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=46.6
Q ss_pred chHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhh---hcC----CCeEEEEcchHHHHHHHHHHHHH
Q 014134 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LAK----PGIVLVVSPLIALMENQVIGLKE 100 (430)
Q Consensus 39 ~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~---l~~----~~~~lil~Pt~~L~~q~~~~~~~ 100 (430)
+++-|.+++.. ..++++|.|+.|||||.+.+.-+ +.. ..+++++++|+..+.++..++..
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 57889999987 78899999999999998765322 222 45799999999999998888877
No 206
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.32 E-value=0.0039 Score=53.59 Aligned_cols=82 Identities=23% Similarity=0.285 Sum_probs=59.6
Q ss_pred ccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHc---CCCEEEEcCCCChHHHHhH---HhhhcCCCe-EEEEcch
Q 014134 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS---GRDCFCLMPTGGGKSMCYQ---IPALAKPGI-VLVVSPL 87 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~---~~~~lv~a~tGsGKT~~~~---~~~l~~~~~-~lil~Pt 87 (430)
..|.+..-++.++=.+.. ++ -+|+.|.+....+.+ ++|.+.+.-+|.|||.+.+ ..++..+.+ +-+++|.
T Consensus 3 ~~w~p~~~P~wLl~E~e~--~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk 79 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIES--NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPK 79 (229)
T ss_pred CCCCchhChHHHHHHHHc--Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCH
Confidence 456777777777666664 54 489999999999886 4789999999999997753 223345544 5555554
Q ss_pred HHHHHHHHHHHHH
Q 014134 88 IALMENQVIGLKE 100 (430)
Q Consensus 88 ~~L~~q~~~~~~~ 100 (430)
+|..|....+..
T Consensus 80 -~Ll~q~~~~L~~ 91 (229)
T PF12340_consen 80 -ALLEQMRQMLRS 91 (229)
T ss_pred -HHHHHHHHHHHH
Confidence 688888887766
No 207
>PRK06526 transposase; Provisional
Probab=97.31 E-value=0.001 Score=59.13 Aligned_cols=44 Identities=23% Similarity=0.182 Sum_probs=27.7
Q ss_pred HHHcCCCEEEEcCCCChHHHHhH---HhhhcCCCeEEEEcchHHHHHH
Q 014134 49 AVLSGRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMEN 93 (430)
Q Consensus 49 ~l~~~~~~lv~a~tGsGKT~~~~---~~~l~~~~~~lil~Pt~~L~~q 93 (430)
.+..+.++++.||+|+|||..+. ..+..++.++++. ...+++++
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~-t~~~l~~~ 140 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA-TAAQWVAR 140 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh-hHHHHHHH
Confidence 34456799999999999995543 2234456666553 33344443
No 208
>PRK04296 thymidine kinase; Provisional
Probab=97.27 E-value=0.0007 Score=57.57 Aligned_cols=32 Identities=28% Similarity=0.144 Sum_probs=23.1
Q ss_pred CEEEEcCCCChHHHHhHHhh---hcCCCeEEEEcc
Q 014134 55 DCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSP 86 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~P 86 (430)
=.++.+|+|+|||..++-.+ ..++.+++++-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 35789999999997665333 245778888866
No 209
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.26 E-value=0.0018 Score=66.81 Aligned_cols=57 Identities=19% Similarity=0.139 Sum_probs=44.0
Q ss_pred cchHHHHHHHHHHHcC-CCEEEEcCCCChHHHHhHH--hhh-cCCCeEEEEcchHHHHHHH
Q 014134 38 QFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQI--PAL-AKPGIVLVVSPLIALMENQ 94 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~-~~~lv~a~tGsGKT~~~~~--~~l-~~~~~~lil~Pt~~L~~q~ 94 (430)
.+++-|.+|+..++.+ +-+++.|++|+|||.+.-. .++ ..+.+++.++||-.-+..+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGL 412 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHH
Confidence 5899999999999875 5678999999999965432 222 3477899999998766554
No 210
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.15 E-value=0.0033 Score=66.05 Aligned_cols=58 Identities=28% Similarity=0.165 Sum_probs=44.3
Q ss_pred CCccchHHHHHHHHHHHcCC-CEEEEcCCCChHHHHhHH--hhh-cCCCeEEEEcchHHHHHH
Q 014134 35 GHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQI--PAL-AKPGIVLVVSPLIALMEN 93 (430)
Q Consensus 35 g~~~~~~~Q~~~~~~l~~~~-~~lv~a~tGsGKT~~~~~--~~l-~~~~~~lil~Pt~~L~~q 93 (430)
|+ .+++-|.+|+..++.++ -+++.|+.|||||.+.-. .++ ..+.+++.++||---+..
T Consensus 344 g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~ 405 (988)
T PRK13889 344 GL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAEN 405 (988)
T ss_pred CC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHH
Confidence 44 59999999999999865 478999999999976321 122 347789999999866654
No 211
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.13 E-value=0.0012 Score=52.85 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=25.7
Q ss_pred CCCEEEEcCCCChHHHHhHHhhhcC-CC--eEEEEcchHHH
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPALAK-PG--IVLVVSPLIAL 90 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~l~~-~~--~~lil~Pt~~L 90 (430)
+..+++.||+|+|||......+..- .. .++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 4678999999999998765333322 22 47777776544
No 212
>PRK08727 hypothetical protein; Validated
Probab=97.13 E-value=0.0041 Score=54.78 Aligned_cols=32 Identities=16% Similarity=0.027 Sum_probs=21.1
Q ss_pred CCEEEEcCCCChHHHHhH---HhhhcCCCeEEEEc
Q 014134 54 RDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVS 85 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~---~~~l~~~~~~lil~ 85 (430)
+.+++.||+|+|||-... ..+..++.+++++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 458999999999994322 12334566666654
No 213
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0083 Score=54.48 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=78.1
Q ss_pred cccccCCCCChHHHHHHHHHHhc--CCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHH
Q 014134 12 SQTQKNKPLHEKEALVKLLRWHF--GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~--g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~ 89 (430)
.+...++..+=.++.++.+.+.- ...+|--++.-.+ --.+.+++-+|+|||||+.+-. +.++-.-..|=+.-.+
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI---~PPKGVLLYGPPGTGKTLLAkA-VA~~T~AtFIrvvgSE 220 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGI---DPPKGVLLYGPPGTGKTLLAKA-VANQTDATFIRVVGSE 220 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCC---CCCCceEeeCCCCCcHHHHHHH-HHhccCceEEEeccHH
Confidence 35666677777777777777532 3444433333222 1247899999999999987633 3333333344445556
Q ss_pred HHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCcc
Q 014134 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (430)
Q Consensus 90 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~ 169 (430)
|++... +.+ +-.+..++..-..+..+.|++||+|.
T Consensus 221 lVqKYi--------------GEG-------------------------------aRlVRelF~lArekaPsIIFiDEIDA 255 (406)
T COG1222 221 LVQKYI--------------GEG-------------------------------ARLVRELFELAREKAPSIIFIDEIDA 255 (406)
T ss_pred HHHHHh--------------ccc-------------------------------hHHHHHHHHHHhhcCCeEEEEechhh
Confidence 655210 000 00111233333334466899999999
Q ss_pred ccc-----cCCCcHHHHHHHHHHHhhCC------CCcEEEEEc
Q 014134 170 ISS-----WGHDFRPSYRKLSSLRNYLP------DVPILALTA 201 (430)
Q Consensus 170 ~~~-----~~~~~~~~~~~l~~~~~~~~------~~~~i~~SA 201 (430)
+.. ....-++.-+.+.++++++. +.++|+.|.
T Consensus 256 Ig~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATN 298 (406)
T COG1222 256 IGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATN 298 (406)
T ss_pred hhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecC
Confidence 853 22235566677777777653 445555443
No 214
>PRK14974 cell division protein FtsY; Provisional
Probab=97.12 E-value=0.022 Score=52.71 Aligned_cols=124 Identities=15% Similarity=0.056 Sum_probs=65.6
Q ss_pred CEEEEcCCCChHHHHhHH--hhh-cCCCeEEEEcc-h--HHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCC
Q 014134 55 DCFCLMPTGGGKSMCYQI--PAL-AKPGIVLVVSP-L--IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~--~~l-~~~~~~lil~P-t--~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (430)
-+++.|++|+|||.+... ..+ .++.+++++.. + ..-.+|+......++.........
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g----------------- 204 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYG----------------- 204 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCC-----------------
Confidence 477899999999975432 122 34556666543 2 344556655555555432211100
Q ss_pred CceeEEEECCccccChhH-HHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhh-CCCCcEEEEEcCCCch
Q 014134 129 PSLRLLYVTPELTATPGF-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPK 206 (430)
Q Consensus 129 ~~~~i~~~~~~~v~T~~~-~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~~SAT~~~~ 206 (430)
..|.. .............++|++|.+.++.. -...+..+..+... .|...++.++|+..++
T Consensus 205 -------------~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~----~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d 267 (336)
T PRK14974 205 -------------ADPAAVAYDAIEHAKARGIDVVLIDTAGRMHT----DANLMDELKKIVRVTKPDLVIFVGDALAGND 267 (336)
T ss_pred -------------CCHHHHHHHHHHHHHhCCCCEEEEECCCccCC----cHHHHHHHHHHHHhhCCceEEEeeccccchh
Confidence 01110 11111111223467999999999753 23333444444432 2566688889988765
Q ss_pred hHHHHH
Q 014134 207 VQKDVM 212 (430)
Q Consensus 207 ~~~~~~ 212 (430)
......
T Consensus 268 ~~~~a~ 273 (336)
T PRK14974 268 AVEQAR 273 (336)
T ss_pred HHHHHH
Confidence 554333
No 215
>PRK12377 putative replication protein; Provisional
Probab=97.11 E-value=0.0096 Score=52.60 Aligned_cols=43 Identities=23% Similarity=0.163 Sum_probs=26.6
Q ss_pred CCEEEEcCCCChHHHHhH-H--hhhcCCCeEEEEcchHHHHHHHHHH
Q 014134 54 RDCFCLMPTGGGKSMCYQ-I--PALAKPGIVLVVSPLIALMENQVIG 97 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~-~--~~l~~~~~~lil~Pt~~L~~q~~~~ 97 (430)
.++++.||+|+|||..+. + .+..++..+++ ++..+|..++...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~-i~~~~l~~~l~~~ 147 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIV-VTVPDVMSRLHES 147 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEE-EEHHHHHHHHHHH
Confidence 579999999999994432 2 22344455544 4556676654433
No 216
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.10 E-value=0.023 Score=53.09 Aligned_cols=125 Identities=16% Similarity=0.111 Sum_probs=66.3
Q ss_pred CCEEEEcCCCChHHHHhHHhh---hcCCCeEEEEc--chH-HHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcC
Q 014134 54 RDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVS--PLI-ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~--Pt~-~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (430)
+.+.+.||+|+|||......+ ..++.++.++. |.| ..++|+.......+....
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~--------------------- 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI--------------------- 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEE---------------------
Confidence 467899999999996654222 23444554443 223 233343332222221111
Q ss_pred CCceeEEEECCccccChhHHHHHHHhhh-cCCccEEEEecCccccccCCCcHHHHHHHHHHHhh-CCCCcEEEEEcCCCc
Q 014134 128 KPSLRLLYVTPELTATPGFMSKLKKIHS-RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAP 205 (430)
Q Consensus 128 ~~~~~i~~~~~~~v~T~~~~~~~~~~~~-~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~~SAT~~~ 205 (430)
...+|..+........ ....++|++|-+-+... -...+..+..+... .|...++.+|||...
T Consensus 301 ------------v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~k----d~~lm~EL~~~lk~~~PdevlLVLsATtk~ 364 (436)
T PRK11889 301 ------------AVRDEAAMTRALTYFKEEARVDYILIDTAGKNYR----ASETVEEMIETMGQVEPDYICLTLSASMKS 364 (436)
T ss_pred ------------ecCCHHHHHHHHHHHHhccCCCEEEEeCccccCc----CHHHHHHHHHHHhhcCCCeEEEEECCccCh
Confidence 1234544444333332 23478999999987543 23334555555543 234446779998877
Q ss_pred hhHHHHHHHh
Q 014134 206 KVQKDVMESL 215 (430)
Q Consensus 206 ~~~~~~~~~~ 215 (430)
.....+...+
T Consensus 365 ~d~~~i~~~F 374 (436)
T PRK11889 365 KDMIEIITNF 374 (436)
T ss_pred HHHHHHHHHh
Confidence 6555555544
No 217
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.08 E-value=0.011 Score=52.19 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHc--------CCCEEEEcCCCChHHHHhHH---hhhcCCCeEEEEcchHHHHHH
Q 014134 40 RDKQLDAIQAVLS--------GRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMEN 93 (430)
Q Consensus 40 ~~~Q~~~~~~l~~--------~~~~lv~a~tGsGKT~~~~~---~~l~~~~~~lil~Pt~~L~~q 93 (430)
++.|..++..+.+ ...+++.+++|+|||..+.. .+..++..++++ +..++...
T Consensus 78 ~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i-t~~~l~~~ 141 (244)
T PRK07952 78 CEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII-TVADIMSA 141 (244)
T ss_pred CchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE-EHHHHHHH
Confidence 3456555555432 14789999999999954321 123445556555 55555444
No 218
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.07 E-value=0.022 Score=48.55 Aligned_cols=61 Identities=23% Similarity=0.172 Sum_probs=37.7
Q ss_pred HHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhC-CCCcEEEEEcCCCchhHHHHHHHh
Q 014134 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (430)
Q Consensus 151 ~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~ 215 (430)
.+....++.++|++|-+.+... -...+..+..+.... |....+.+|||........+..+.
T Consensus 76 l~~~~~~~~D~vlIDT~Gr~~~----d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~ 137 (196)
T PF00448_consen 76 LEKFRKKGYDLVLIDTAGRSPR----DEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFY 137 (196)
T ss_dssp HHHHHHTTSSEEEEEE-SSSST----HHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHH
T ss_pred HHHHhhcCCCEEEEecCCcchh----hHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHh
Confidence 3333445578999999987432 333445555555554 344589999999887665555443
No 219
>PRK06921 hypothetical protein; Provisional
Probab=97.06 E-value=0.028 Score=50.49 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=25.1
Q ss_pred CCCEEEEcCCCChHHHHhHH---hhhcC-CCeEEEEcchHHHHHH
Q 014134 53 GRDCFCLMPTGGGKSMCYQI---PALAK-PGIVLVVSPLIALMEN 93 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~---~~l~~-~~~~lil~Pt~~L~~q 93 (430)
+.++++.|++|+|||..+.. .++.+ +..++++. ..++..+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP-FVEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE-HHHHHHH
Confidence 56899999999999944321 12334 55666654 4455444
No 220
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.00 E-value=0.0017 Score=51.50 Aligned_cols=32 Identities=16% Similarity=0.009 Sum_probs=19.9
Q ss_pred EEEEcCCCChHHHHhHHhhhcCCCeEEEEcch
Q 014134 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt 87 (430)
+++.||+|+|||..+-..+-.-+..++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~ 32 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGS 32 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETT
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccc
Confidence 58999999999976644333333344444333
No 221
>PRK06893 DNA replication initiation factor; Validated
Probab=96.96 E-value=0.0041 Score=54.65 Aligned_cols=47 Identities=13% Similarity=0.260 Sum_probs=25.4
Q ss_pred ccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchh
Q 014134 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (430)
Q Consensus 159 ~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~ 207 (430)
.+++++||+|.+......-...+..+..... .+.+++++|++.++..
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~--~~~~illits~~~p~~ 138 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKE--QGKTLLLISADCSPHA 138 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHH--cCCcEEEEeCCCChHH
Confidence 5699999999875321101112222222222 1345678888876653
No 222
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.91 E-value=0.02 Score=52.87 Aligned_cols=41 Identities=20% Similarity=0.167 Sum_probs=27.0
Q ss_pred CCCEEEEcCCCChHHHHhH---HhhhcCCCeEEEEcchHHHHHHH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQ 94 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~---~~~l~~~~~~lil~Pt~~L~~q~ 94 (430)
+.++++.||||+|||..+. -.++.++..|++ .+..+|..+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y-~t~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIY-RTADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEE-EEHHHHHHHH
Confidence 5789999999999995432 223445666665 4555665544
No 223
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.90 E-value=0.11 Score=59.50 Aligned_cols=59 Identities=10% Similarity=0.025 Sum_probs=45.4
Q ss_pred cchHHHHHHHHHHHcC--CCEEEEcCCCChHHHHhH--Hhhh-cCCCeEEEEcchHHHHHHHHH
Q 014134 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQ--IPAL-AKPGIVLVVSPLIALMENQVI 96 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~--~~~lv~a~tGsGKT~~~~--~~~l-~~~~~~lil~Pt~~L~~q~~~ 96 (430)
.+++-|.+|+..++.. +-.++.++.|+|||.+.- ..++ ..+.+++.++||..-+.+..+
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e 492 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQ 492 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence 5889999999999876 457899999999996542 2233 347889999999876665444
No 224
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.85 E-value=0.01 Score=50.31 Aligned_cols=47 Identities=19% Similarity=0.075 Sum_probs=33.7
Q ss_pred EEEEcCCCChHHHHhH---HhhhcCCCeEEEEcchHHHHHHHHHHHHHcCc
Q 014134 56 CFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~---~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 103 (430)
+++.||+|+|||...+ ...+..+.+++|++. .+-..++.+.+..+|.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~-e~~~~~~~~~~~~~g~ 51 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL-EESPEELIENAESLGW 51 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC-CCCHHHHHHHHHHcCC
Confidence 6899999999997654 334466778888864 4556677777777654
No 225
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.80 E-value=0.0061 Score=54.11 Aligned_cols=34 Identities=21% Similarity=0.125 Sum_probs=23.6
Q ss_pred HHHHHHHHHHc------CCCEEEEcCCCChHHHHhHHhhh
Q 014134 42 KQLDAIQAVLS------GRDCFCLMPTGGGKSMCYQIPAL 75 (430)
Q Consensus 42 ~Q~~~~~~l~~------~~~~lv~a~tGsGKT~~~~~~~l 75 (430)
.|...+..+.+ .-+.++.||+|||||-++.+..-
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar 79 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFAR 79 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHH
Confidence 45555555432 24799999999999988765543
No 226
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.78 E-value=0.017 Score=51.42 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=41.7
Q ss_pred cCCccchHHHHHHHHHHH-------cCCCEEEEcCCCChHHHHhH---HhhhcCCCeEEEEcchHHHHHHHHHHHH
Q 014134 34 FGHAQFRDKQLDAIQAVL-------SGRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLK 99 (430)
Q Consensus 34 ~g~~~~~~~Q~~~~~~l~-------~~~~~lv~a~tGsGKT~~~~---~~~l~~~~~~lil~Pt~~L~~q~~~~~~ 99 (430)
|.|.-....+..++..+. +++++++.||+|+|||..+. ..++ +.+.-++.+++.+++.++...+.
T Consensus 79 ~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 79 FDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred ccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEEHHHHHHHHHHHHh
Confidence 445555555666555543 56799999999999995433 2234 43444555788888887665553
No 227
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.77 E-value=0.011 Score=52.07 Aligned_cols=32 Identities=16% Similarity=0.067 Sum_probs=20.3
Q ss_pred CCEEEEcCCCChHHHHhHH-h--hhcCCCeEEEEc
Q 014134 54 RDCFCLMPTGGGKSMCYQI-P--ALAKPGIVLVVS 85 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~-~--~l~~~~~~lil~ 85 (430)
..+++.||+|+|||-.... . +..++.+++++.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~ 80 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP 80 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 5799999999999944321 1 223345555543
No 228
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.75 E-value=0.11 Score=48.81 Aligned_cols=53 Identities=21% Similarity=0.183 Sum_probs=30.3
Q ss_pred CCccEEEEecCccccccCCCcHHHHHHHHHHHhhC-CCCcEEEEEcCCCchhHHHHHH
Q 014134 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVME 213 (430)
Q Consensus 157 ~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~SAT~~~~~~~~~~~ 213 (430)
...++|+||++-+.-. -......+..+.... +...++++|||...........
T Consensus 214 ~~~DlVLIDTaG~~~~----d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 214 RNKHMVLIDTIGMSQR----DRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred cCCCEEEEcCCCCCcc----cHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 3467999999976421 111223333332222 2334889999998876655443
No 229
>PRK08116 hypothetical protein; Validated
Probab=96.74 E-value=0.039 Score=49.61 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=25.4
Q ss_pred CEEEEcCCCChHHHHhHHh---hhcCCCeEEEEcchHHHHHHHHHH
Q 014134 55 DCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIG 97 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~~---~l~~~~~~lil~Pt~~L~~q~~~~ 97 (430)
.+++.|++|+|||..+... ++.++..+++ .+..++..++...
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~-~~~~~ll~~i~~~ 160 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIF-VNFPQLLNRIKST 160 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE-EEHHHHHHHHHHH
Confidence 4999999999999544321 2234555544 4555665554433
No 230
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.73 E-value=0.011 Score=62.71 Aligned_cols=58 Identities=24% Similarity=0.133 Sum_probs=44.2
Q ss_pred ccchHHHHHHHHHHHcC-CCEEEEcCCCChHHHHhHHh--hh-cCCCeEEEEcchHHHHHHH
Q 014134 37 AQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIP--AL-AKPGIVLVVSPLIALMENQ 94 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~~~-~~~lv~a~tGsGKT~~~~~~--~l-~~~~~~lil~Pt~~L~~q~ 94 (430)
..+++-|.+|+..+..+ +-.++.|+.|||||.+.-.. ++ ..+.+++.++||-.-+...
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGL 441 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHH
Confidence 35999999999988654 56889999999999764322 22 3577899999997766554
No 231
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.73 E-value=0.0027 Score=54.31 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=16.4
Q ss_pred CEEEEcCCCChHHHHhHHhh
Q 014134 55 DCFCLMPTGGGKSMCYQIPA 74 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~~~ 74 (430)
+++++||+|+|||..+.+.+
T Consensus 52 h~lf~GPPG~GKTTLA~IIA 71 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIA 71 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred eEEEECCCccchhHHHHHHH
Confidence 79999999999997665443
No 232
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.65 E-value=0.024 Score=54.63 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=15.2
Q ss_pred EEEEcCCCChHHHHhHHh
Q 014134 56 CFCLMPTGGGKSMCYQIP 73 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~~~ 73 (430)
+++.||.|+|||.++.+.
T Consensus 43 ~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 43 YIFFGPRGVGKTTIARIL 60 (484)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 799999999999776543
No 233
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.61 E-value=0.012 Score=56.79 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=15.9
Q ss_pred CCEEEEcCCCChHHHHhHH
Q 014134 54 RDCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~ 72 (430)
.++++.||+|+|||..+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARI 55 (413)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3799999999999976644
No 234
>PF13173 AAA_14: AAA domain
Probab=96.57 E-value=0.018 Score=45.38 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=23.4
Q ss_pred ccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcC
Q 014134 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202 (430)
Q Consensus 159 ~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT 202 (430)
-.++++||+|.+.++. ..+..+....++.++++.+..
T Consensus 62 ~~~i~iDEiq~~~~~~-------~~lk~l~d~~~~~~ii~tgS~ 98 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWE-------DALKFLVDNGPNIKIILTGSS 98 (128)
T ss_pred CcEEEEehhhhhccHH-------HHHHHHHHhccCceEEEEccc
Confidence 4589999999986643 455555555445555444433
No 235
>PRK05642 DNA replication initiation factor; Validated
Probab=96.57 E-value=0.016 Score=50.98 Aligned_cols=33 Identities=12% Similarity=-0.024 Sum_probs=21.1
Q ss_pred CCEEEEcCCCChHHHHhH-Hh--hhcCCCeEEEEcc
Q 014134 54 RDCFCLMPTGGGKSMCYQ-IP--ALAKPGIVLVVSP 86 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~-~~--~l~~~~~~lil~P 86 (430)
+.++++||+|+|||--.. +. +.+++.+++|+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH
Confidence 568899999999994322 11 2344566766543
No 236
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.56 E-value=0.013 Score=59.91 Aligned_cols=19 Identities=26% Similarity=0.308 Sum_probs=15.8
Q ss_pred CCEEEEcCCCChHHHHhHH
Q 014134 54 RDCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~ 72 (430)
.++++.||+|+|||..+..
T Consensus 53 ~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARI 71 (725)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3799999999999976543
No 237
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.53 E-value=0.051 Score=44.57 Aligned_cols=35 Identities=29% Similarity=0.271 Sum_probs=22.9
Q ss_pred EEEEcCCCChHHHHhHHhh---hcCCCeEEEEcchHHH
Q 014134 56 CFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIAL 90 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~Pt~~L 90 (430)
+++.||+|+|||......+ ...+..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 6789999999997553222 2346677777654433
No 238
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.028 Score=49.80 Aligned_cols=118 Identities=16% Similarity=0.194 Sum_probs=66.1
Q ss_pred HHHHHcCC-----CEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHH
Q 014134 47 IQAVLSGR-----DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIY 121 (430)
Q Consensus 47 ~~~l~~~~-----~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (430)
+|++..|+ .+++.+|+|+||+..+-.-+-+.+ ...+-+.+..|+..|.-+-.++
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-STFFSvSSSDLvSKWmGESEkL-------------------- 213 (439)
T KOG0739|consen 155 FPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-STFFSVSSSDLVSKWMGESEKL-------------------- 213 (439)
T ss_pred chhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-CceEEeehHHHHHHHhccHHHH--------------------
Confidence 34555663 589999999999965433333334 5677777778877655333321
Q ss_pred hhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCC-cHHHHHHH-HHHHhhCC-----CC
Q 014134 122 EDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD-FRPSYRKL-SSLRNYLP-----DV 194 (430)
Q Consensus 122 ~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~-~~~~~~~l-~~~~~~~~-----~~ 194 (430)
+.+++.....+..+.|.|||+|.+...+.. -....+++ .+++-+.. +-
T Consensus 214 -------------------------VknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~ 268 (439)
T KOG0739|consen 214 -------------------------VKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDND 268 (439)
T ss_pred -------------------------HHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCC
Confidence 112333333444678999999987543221 11122222 11221221 33
Q ss_pred cEEEEEcCCCchhHHH
Q 014134 195 PILALTATAAPKVQKD 210 (430)
Q Consensus 195 ~~i~~SAT~~~~~~~~ 210 (430)
-++.+.||-.+.+...
T Consensus 269 gvLVLgATNiPw~LDs 284 (439)
T KOG0739|consen 269 GVLVLGATNIPWVLDS 284 (439)
T ss_pred ceEEEecCCCchhHHH
Confidence 4888999976655443
No 239
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.53 E-value=0.086 Score=50.71 Aligned_cols=55 Identities=22% Similarity=0.158 Sum_probs=34.2
Q ss_pred CccEEEEecCccccccCCCcHHHHHHHHHHHh-h-CCCCcEEEEEcCCCchhHHHHHHHhC
Q 014134 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN-Y-LPDVPILALTATAAPKVQKDVMESLC 216 (430)
Q Consensus 158 ~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~i~~SAT~~~~~~~~~~~~~~ 216 (430)
..++|+||.+-+... -......+..+.. . .+....+++|||........+...+.
T Consensus 299 ~~DlVlIDt~G~~~~----d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~ 355 (424)
T PRK05703 299 DCDVILIDTAGRSQR----DKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS 355 (424)
T ss_pred CCCEEEEeCCCCCCC----CHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC
Confidence 478999999977422 2222344444444 1 23344888999998877776666553
No 240
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.50 E-value=0.41 Score=44.87 Aligned_cols=125 Identities=16% Similarity=0.152 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCChHHHHhH-----HhhhcCC-CeEEEEcchHHHHH--HHHHHHHHcCcceeEeCCCchHHHHHHHHhhh
Q 014134 53 GRDCFCLMPTGGGKSMCYQ-----IPALAKP-GIVLVVSPLIALME--NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDL 124 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~-----~~~l~~~-~~~lil~Pt~~L~~--q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (430)
++-+.+.||||.|||.+.. ..++... ..+||-+-|--... |...-...++....
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~------------------ 264 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE------------------ 264 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE------------------
Confidence 5678899999999996543 2223333 34566555543322 22211222222211
Q ss_pred hcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCC-cEEEEEcCC
Q 014134 125 DSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV-PILALTATA 203 (430)
Q Consensus 125 ~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~-~~i~~SAT~ 203 (430)
++-+|.-+...... +.+.++|.+|=+-+--. ....+..+..+...-.+. ..+.+|||.
T Consensus 265 ---------------vv~~~~el~~ai~~--l~~~d~ILVDTaGrs~~----D~~~i~el~~~~~~~~~i~~~Lvlsat~ 323 (407)
T COG1419 265 ---------------VVYSPKELAEAIEA--LRDCDVILVDTAGRSQY----DKEKIEELKELIDVSHSIEVYLVLSATT 323 (407)
T ss_pred ---------------EecCHHHHHHHHHH--hhcCCEEEEeCCCCCcc----CHHHHHHHHHHHhccccceEEEEEecCc
Confidence 45555533333322 33358999998887322 233345555555544333 378899998
Q ss_pred CchhHHHHHHHhC
Q 014134 204 APKVQKDVMESLC 216 (430)
Q Consensus 204 ~~~~~~~~~~~~~ 216 (430)
-......+...+.
T Consensus 324 K~~dlkei~~~f~ 336 (407)
T COG1419 324 KYEDLKEIIKQFS 336 (407)
T ss_pred chHHHHHHHHHhc
Confidence 8887777776654
No 241
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.48 E-value=0.026 Score=50.71 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=15.5
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
.++++.||+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 478999999999997663
No 242
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.024 Score=54.16 Aligned_cols=70 Identities=17% Similarity=0.127 Sum_probs=40.3
Q ss_pred CCCChHHHHHHHHHHhcCCccchHHHHHHHHH-------HHcC-----CCEEEEcCCCChHHHHhHHhhhc-CCCeEEEE
Q 014134 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-------VLSG-----RDCFCLMPTGGGKSMCYQIPALA-KPGIVLVV 84 (430)
Q Consensus 18 ~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~-------l~~~-----~~~lv~a~tGsGKT~~~~~~~l~-~~~~~lil 84 (430)
+.++.+++-...... -|.-...+.=.+.+.. +.+. ..+++.+|+|||||..+.-.++. ..+-+=++
T Consensus 492 PAFG~see~l~~~~~-~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKii 570 (744)
T KOG0741|consen 492 PAFGISEEDLERFVM-NGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKII 570 (744)
T ss_pred cccCCCHHHHHHHHh-CCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEe
Confidence 447777777666665 2443333333333322 1111 36899999999999665544444 44556666
Q ss_pred cchH
Q 014134 85 SPLI 88 (430)
Q Consensus 85 ~Pt~ 88 (430)
.|..
T Consensus 571 Spe~ 574 (744)
T KOG0741|consen 571 SPED 574 (744)
T ss_pred ChHH
Confidence 6653
No 243
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.45 E-value=0.056 Score=47.45 Aligned_cols=51 Identities=20% Similarity=0.044 Sum_probs=34.7
Q ss_pred cCCCEEEEcCCCChHHHHhH---HhhhcCCCeEEEEcchHHHHHHHHHHHHHcCc
Q 014134 52 SGRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~---~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 103 (430)
.+.-+++.+++|+|||..+. ...+.++.++++++. .+-..+..+.+..+|.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~-e~~~~~~~~~~~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST-QLTTTEFIKQMMSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC-CCCHHHHHHHHHHhCC
Confidence 46678999999999997643 223456778888884 3344556666666553
No 244
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.37 E-value=0.018 Score=63.28 Aligned_cols=57 Identities=18% Similarity=0.199 Sum_probs=44.0
Q ss_pred cchHHHHHHHHHHHcC--CCEEEEcCCCChHHHHhH--Hhhh-----cCCCeEEEEcchHHHHHHH
Q 014134 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQ--IPAL-----AKPGIVLVVSPLIALMENQ 94 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~--~~~lv~a~tGsGKT~~~~--~~~l-----~~~~~~lil~Pt~~L~~q~ 94 (430)
.+++.|.+|+..++.+ +-+++.|..|+|||.+.- +.++ ..+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHH
Confidence 6999999999999865 678999999999997642 2222 1356788899998776654
No 245
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.35 E-value=0.033 Score=50.02 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=15.5
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
.++++.|+||-|||...-
T Consensus 62 p~lLivG~snnGKT~Ii~ 79 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIE 79 (302)
T ss_pred CceEEecCCCCcHHHHHH
Confidence 489999999999997653
No 246
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.33 E-value=0.042 Score=53.67 Aligned_cols=43 Identities=21% Similarity=0.131 Sum_probs=25.2
Q ss_pred CCEEEEcCCCChHHHHhHHh---hhcC--CCeEEEEcchHHHHHHHHHH
Q 014134 54 RDCFCLMPTGGGKSMCYQIP---ALAK--PGIVLVVSPLIALMENQVIG 97 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~~---~l~~--~~~~lil~Pt~~L~~q~~~~ 97 (430)
+.+++.||+|+|||...... +..+ +.+++++ +..++..+....
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi-~~~~~~~~~~~~ 196 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV-TSEKFTNDFVNA 196 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE-EHHHHHHHHHHH
Confidence 45899999999999543221 1222 4456665 445555544333
No 247
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.32 E-value=0.042 Score=53.20 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=24.2
Q ss_pred CCEEEEcCCCChHHHHhHH---hhhcCCCeEEEEcchHHHHHH
Q 014134 54 RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMEN 93 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~---~~l~~~~~~lil~Pt~~L~~q 93 (430)
+.+++.||+|+|||-.... .+...+.+++++.. ..+..+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~-~~f~~~ 183 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS-ELFTEH 183 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH-HHHHHH
Confidence 4589999999999944321 12234666777653 344443
No 248
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.30 E-value=0.025 Score=52.39 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=22.0
Q ss_pred ccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCC
Q 014134 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (430)
Q Consensus 159 ~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~ 203 (430)
.++||+||+|.+.... ....+..+....+....++++++-
T Consensus 101 ~~vliiDe~d~l~~~~-----~~~~L~~~le~~~~~~~~Ilt~n~ 140 (316)
T PHA02544 101 GKVIIIDEFDRLGLAD-----AQRHLRSFMEAYSKNCSFIITANN 140 (316)
T ss_pred CeEEEEECcccccCHH-----HHHHHHHHHHhcCCCceEEEEcCC
Confidence 5689999999873211 123444444444433344455543
No 249
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.26 E-value=0.13 Score=50.07 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=34.7
Q ss_pred HHHHHHHHHhh--cCCceEEEEeccccccccccCceEEEEecC---------CCC----HHHHHHHhccCCCC
Q 014134 295 KARSSVLDDWI--SSRKQVVVATVAFGMGIDRKDVRLVCHFNI---------PKS----MEAFYQESGRAGRD 352 (430)
Q Consensus 295 ~~r~~~~~~f~--~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~---------p~s----~~~~~q~~GR~~R~ 352 (430)
++-+..+.... ++.++++.+.|.+.+|.|+-+. +.+.. ... ...=.|.+||..|.
T Consensus 315 ~e~~lllnsled~dnpir~if~vd~lnegwdvlnl---fdmr~i~rrk~~an~kk~~~~TikekQLIGRGaRY 384 (812)
T COG3421 315 EESMLLLNSLEDRDNPIRVIFSVDKLNEGWDVLNL---FDMRGIKRRKKMANDKKLAAATIKEKQLIGRGARY 384 (812)
T ss_pred HHHHHHHhhhhhcCCCeEEEEEeecccccchhhhh---hhHHHHHHHHhhhcccchhhhhhhHHHHHhcccee
Confidence 34455555554 5678999999999999996432 11110 112 23447889998885
No 250
>PRK05973 replicative DNA helicase; Provisional
Probab=96.25 E-value=0.098 Score=45.81 Aligned_cols=85 Identities=13% Similarity=0.063 Sum_probs=52.4
Q ss_pred CCCCChHHHHHHHHHHhcCCccchHHHHH---------HHHHHHcCCCEEEEcCCCChHHHHhH---HhhhcCCCeEEEE
Q 014134 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLD---------AIQAVLSGRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVV 84 (430)
Q Consensus 17 ~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~---------~~~~l~~~~~~lv~a~tGsGKT~~~~---~~~l~~~~~~lil 84 (430)
....++++.+.+.-.+ -||..-.-.... ...-+..|.-+++.|++|+|||...+ ...+.++.+++|+
T Consensus 20 ~~~~~~~~~~~~~a~~-~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyf 98 (237)
T PRK05973 20 AQNIPLHEALDRIAAE-EGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFF 98 (237)
T ss_pred hcCCcHHHHHHHHHHH-hccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3557888877776666 477642222221 22223345668899999999997654 2334567778887
Q ss_pred cchHHHHHHHHHHHHHcCc
Q 014134 85 SPLIALMENQVIGLKEKGI 103 (430)
Q Consensus 85 ~Pt~~L~~q~~~~~~~~~~ 103 (430)
+-- +-.+|+.+++..+|.
T Consensus 99 SlE-es~~~i~~R~~s~g~ 116 (237)
T PRK05973 99 TLE-YTEQDVRDRLRALGA 116 (237)
T ss_pred EEe-CCHHHHHHHHHHcCC
Confidence 533 234667777777653
No 251
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.24 E-value=0.27 Score=44.10 Aligned_cols=125 Identities=16% Similarity=0.137 Sum_probs=66.5
Q ss_pred CCEEEEcCCCChHHHHhHHhh--h-cCCCeEEEEcc-h-H-HHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcC
Q 014134 54 RDCFCLMPTGGGKSMCYQIPA--L-AKPGIVLVVSP-L-I-ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~~~--l-~~~~~~lil~P-t-~-~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (430)
..+.+.+|+|+|||..+...+ + .++.++.++.- + + ..+.|+.......+....
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~--------------------- 134 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI--------------------- 134 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEE---------------------
Confidence 568899999999997654322 2 23444544432 2 2 455555544433322111
Q ss_pred CCceeEEEECCccccChhHHHHHHHhh-hcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhC-CCCcEEEEEcCCCc
Q 014134 128 KPSLRLLYVTPELTATPGFMSKLKKIH-SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAP 205 (430)
Q Consensus 128 ~~~~~i~~~~~~~v~T~~~~~~~~~~~-~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~SAT~~~ 205 (430)
...++..+....... .....+++++|.+-+... -...+..+..+.... |....+.+|||...
T Consensus 135 ------------~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~----~~~~l~el~~~~~~~~~~~~~LVl~a~~~~ 198 (270)
T PRK06731 135 ------------AVRDEAAMTRALTYFKEEARVDYILIDTAGKNYR----ASETVEEMIETMGQVEPDYICLTLSASMKS 198 (270)
T ss_pred ------------ecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcC----CHHHHHHHHHHHhhhCCCeEEEEEcCccCH
Confidence 112333332322222 223578999999987532 233344454444433 33347789999877
Q ss_pred hhHHHHHHHh
Q 014134 206 KVQKDVMESL 215 (430)
Q Consensus 206 ~~~~~~~~~~ 215 (430)
.........+
T Consensus 199 ~d~~~~~~~f 208 (270)
T PRK06731 199 KDMIEIITNF 208 (270)
T ss_pred HHHHHHHHHh
Confidence 6555555544
No 252
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.24 E-value=0.016 Score=53.56 Aligned_cols=34 Identities=18% Similarity=0.084 Sum_probs=27.5
Q ss_pred cchHHHHHHHHHHHcCC----CEEEEcCCCChHHHHhH
Q 014134 38 QFRDKQLDAIQAVLSGR----DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~~----~~lv~a~tGsGKT~~~~ 71 (430)
.+.|||...+..+...+ ..++.||.|+|||..+.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~ 40 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAE 40 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHH
Confidence 35799999999988653 48899999999996553
No 253
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.24 E-value=0.066 Score=55.02 Aligned_cols=17 Identities=18% Similarity=0.112 Sum_probs=13.9
Q ss_pred EEEEcCCCChHHHHhHH
Q 014134 56 CFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~~ 72 (430)
++|.|+||+|||++...
T Consensus 784 LYIyG~PGTGKTATVK~ 800 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYS 800 (1164)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 35999999999987643
No 254
>PRK09183 transposase/IS protein; Provisional
Probab=96.22 E-value=0.05 Score=48.66 Aligned_cols=43 Identities=19% Similarity=0.108 Sum_probs=27.9
Q ss_pred HHcCCCEEEEcCCCChHHHHhHHh---hhcCCCeEEEEcchHHHHHH
Q 014134 50 VLSGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMEN 93 (430)
Q Consensus 50 l~~~~~~lv~a~tGsGKT~~~~~~---~l~~~~~~lil~Pt~~L~~q 93 (430)
+.++.++++.||+|+|||..+... +...+..++++ +..++..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~-~~~~l~~~ 144 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT-TAADLLLQ 144 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE-eHHHHHHH
Confidence 446789999999999999544322 23456666665 34455443
No 255
>PRK04195 replication factor C large subunit; Provisional
Probab=96.19 E-value=0.057 Score=53.17 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=16.9
Q ss_pred CCCEEEEcCCCChHHHHhHHh
Q 014134 53 GRDCFCLMPTGGGKSMCYQIP 73 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~ 73 (430)
.+.+++.||+|+|||..+...
T Consensus 39 ~~~lLL~GppG~GKTtla~al 59 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHAL 59 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 467999999999999766433
No 256
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.19 E-value=0.045 Score=47.65 Aligned_cols=47 Identities=9% Similarity=0.157 Sum_probs=25.2
Q ss_pred CccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCch
Q 014134 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (430)
Q Consensus 158 ~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~ 206 (430)
..+++++|++|.+..........+..+..+... +.++|+.|..+|..
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--GKQLILTSDRPPSE 143 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--TSEEEEEESS-TTT
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--CCeEEEEeCCCCcc
Confidence 477999999999865321112222333333332 45666666565553
No 257
>PHA02533 17 large terminase protein; Provisional
Probab=96.17 E-value=0.049 Score=53.90 Aligned_cols=63 Identities=21% Similarity=0.196 Sum_probs=48.8
Q ss_pred cchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHh-----hhcCCCeEEEEcchHHHHHHHHHHHHH
Q 014134 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP-----ALAKPGIVLVVSPLIALMENQVIGLKE 100 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~-----~l~~~~~~lil~Pt~~L~~q~~~~~~~ 100 (430)
.|+|+|...+..+..++-.++..+=..|||.+.... +...+..+++++|+..-+..+.+.++.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~ 126 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQ 126 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 488999999988766666678888889999665422 235567999999999998888777664
No 258
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.16 E-value=0.12 Score=46.59 Aligned_cols=38 Identities=18% Similarity=0.071 Sum_probs=26.0
Q ss_pred HHHcCCCEEEEcCCCChHHHHhHHh---hhcC-CCeEEEEcc
Q 014134 49 AVLSGRDCFCLMPTGGGKSMCYQIP---ALAK-PGIVLVVSP 86 (430)
Q Consensus 49 ~l~~~~~~lv~a~tGsGKT~~~~~~---~l~~-~~~~lil~P 86 (430)
-+..|.-+++.|++|+|||....-. +... +..++|++-
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 3445678899999999999654422 2233 677888763
No 259
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.13 E-value=0.025 Score=56.30 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=14.8
Q ss_pred CEEEEcCCCChHHHHhHH
Q 014134 55 DCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~ 72 (430)
-+|+.||.|+|||..+.+
T Consensus 40 A~LFtGP~GvGKTTLAri 57 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRI 57 (700)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 369999999999976643
No 260
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.12 E-value=0.027 Score=51.37 Aligned_cols=42 Identities=17% Similarity=0.077 Sum_probs=25.6
Q ss_pred CCEEEEcCCCChHHHHhHHhhhcCC---CeEEEEcchHHHHHHHH
Q 014134 54 RDCFCLMPTGGGKSMCYQIPALAKP---GIVLVVSPLIALMENQV 95 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~~~l~~~---~~~lil~Pt~~L~~q~~ 95 (430)
.++|+++|+|+|||..+-+.+-... .+.+=+.-|.+-.+++.
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR 207 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVR 207 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHH
Confidence 4799999999999977655443322 23444444444444333
No 261
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.12 E-value=0.15 Score=50.54 Aligned_cols=110 Identities=20% Similarity=0.222 Sum_probs=72.2
Q ss_pred HHHHhcCCceEEEEeCccccHHHHHHHHHcCCC-------cceeecCCCCHHHHHHHHHHhh----cCCceEEEE--ecc
Q 014134 251 SVLKANGDTCAIVYCLERTTCDELSAYLSAGGI-------SCAAYHAGLNDKARSSVLDDWI----SSRKQVVVA--TVA 317 (430)
Q Consensus 251 ~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~-------~~~~~hg~~~~~~r~~~~~~f~----~g~~~vLv~--T~~ 317 (430)
++...-+ +.+++|++|.+-...+.+...+.|+ +-++.-..-+ -+.+++.|. .|.-.+|++ ---
T Consensus 623 nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGK 698 (821)
T KOG1133|consen 623 NLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGK 698 (821)
T ss_pred HHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 3333335 5699999999999999988876553 2222322222 355666665 344456655 467
Q ss_pred ccccccccC--ceEEEEecCCC------------------------CHH--------HHHHHhccCCCCCCCceEEEeeC
Q 014134 318 FGMGIDRKD--VRLVCHFNIPK------------------------SME--------AFYQESGRAGRDQLPSKSLLYYG 363 (430)
Q Consensus 318 ~~~Gidi~~--~~~vi~~~~p~------------------------s~~--------~~~q~~GR~~R~g~~g~~i~~~~ 363 (430)
+++|||+.+ ++.|+..++|. +.+ ..-|-+|||-|..++=.++++++
T Consensus 699 lSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD 778 (821)
T KOG1133|consen 699 LSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLD 778 (821)
T ss_pred cccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEeh
Confidence 899999976 67888877764 111 23588999999876666666665
Q ss_pred c
Q 014134 364 M 364 (430)
Q Consensus 364 ~ 364 (430)
.
T Consensus 779 ~ 779 (821)
T KOG1133|consen 779 K 779 (821)
T ss_pred h
Confidence 4
No 262
>PLN03025 replication factor C subunit; Provisional
Probab=96.11 E-value=0.079 Score=49.15 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=25.5
Q ss_pred CccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchh
Q 014134 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (430)
Q Consensus 158 ~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~ 207 (430)
..+++|+||+|.+.... -..+.+....+++...++++++.....
T Consensus 99 ~~kviiiDE~d~lt~~a------q~aL~~~lE~~~~~t~~il~~n~~~~i 142 (319)
T PLN03025 99 RHKIVILDEADSMTSGA------QQALRRTMEIYSNTTRFALACNTSSKI 142 (319)
T ss_pred CeEEEEEechhhcCHHH------HHHHHHHHhcccCCceEEEEeCCcccc
Confidence 36799999999985422 133444445545444455555544433
No 263
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.11 E-value=0.042 Score=52.11 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=15.5
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
.++++.||+|+|||.+..
T Consensus 41 ~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 579999999999997653
No 264
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.10 E-value=0.034 Score=55.43 Aligned_cols=63 Identities=16% Similarity=0.092 Sum_probs=49.8
Q ss_pred cchHHHHHHHHHHHcC--CCEEEEcCCCChHHHHhHHhhh----cCCCeEEEEcchHHHHHHHHH-HHHH
Q 014134 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVI-GLKE 100 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~--~~~lv~a~tGsGKT~~~~~~~l----~~~~~~lil~Pt~~L~~q~~~-~~~~ 100 (430)
..+|+|.+.+..+... +.+.++.++-+|||.+.+..+. .....++++.||.+++.++.+ .+..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~P 85 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDP 85 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHH
Confidence 5789999999998765 5899999999999986554432 345789999999999998774 3544
No 265
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.05 E-value=0.011 Score=50.31 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=16.1
Q ss_pred CCEEEEcCCCChHHHHhHH
Q 014134 54 RDCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~ 72 (430)
-++++.+|+|+|||.+...
T Consensus 49 P~liisGpPG~GKTTsi~~ 67 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILC 67 (333)
T ss_pred CceEeeCCCCCchhhHHHH
Confidence 3899999999999987643
No 266
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.03 E-value=0.4 Score=46.91 Aligned_cols=53 Identities=26% Similarity=0.141 Sum_probs=29.7
Q ss_pred CCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHH
Q 014134 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213 (430)
Q Consensus 157 ~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~ 213 (430)
...++|+||.+-.... -......+..+........+++++++........+..
T Consensus 427 ~~~DLVLIDTaG~s~~----D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~ 479 (559)
T PRK12727 427 RDYKLVLIDTAGMGQR----DRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVR 479 (559)
T ss_pred ccCCEEEecCCCcchh----hHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHH
Confidence 3478999999987422 1112223333333333456888888876554444443
No 267
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.01 E-value=0.046 Score=53.24 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=16.3
Q ss_pred CCEEEEcCCCChHHHHhHHh
Q 014134 54 RDCFCLMPTGGGKSMCYQIP 73 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~~ 73 (430)
..++++||.|+|||.++.+.
T Consensus 36 ha~Lf~Gp~G~GKTT~Aril 55 (491)
T PRK14964 36 QSILLVGASGVGKTTCARII 55 (491)
T ss_pred ceEEEECCCCccHHHHHHHH
Confidence 36999999999999876543
No 268
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.17 Score=47.61 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.5
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
.|+++-|+||||||.+.-
T Consensus 43 ~n~~iyG~~GTGKT~~~~ 60 (366)
T COG1474 43 SNIIIYGPTGTGKTATVK 60 (366)
T ss_pred ccEEEECCCCCCHhHHHH
Confidence 479999999999997754
No 269
>CHL00181 cbbX CbbX; Provisional
Probab=95.98 E-value=0.092 Score=47.73 Aligned_cols=18 Identities=17% Similarity=0.036 Sum_probs=15.4
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
-++++.||+|+|||.++-
T Consensus 60 ~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999997764
No 270
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.97 E-value=0.014 Score=59.75 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=48.5
Q ss_pred cchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhh---hcC----CCeEEEEcchHHHHHHHHHHHHHc
Q 014134 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LAK----PGIVLVVSPLIALMENQVIGLKEK 101 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~---l~~----~~~~lil~Pt~~L~~q~~~~~~~~ 101 (430)
.+++-|.+|+.. ...+++|.|++|||||.+...-+ ++. ..++|+++.|+..|.++.+++...
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHH
Confidence 478899999865 46789999999999997754222 322 347999999999999998888763
No 271
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.97 E-value=0.054 Score=47.41 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
+.++++.||+|+|||..+.
T Consensus 38 ~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4689999999999996653
No 272
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.94 E-value=0.36 Score=45.88 Aligned_cols=55 Identities=16% Similarity=0.168 Sum_probs=34.7
Q ss_pred CCccEEEEecCccccccCCCcHHHHHHHHHHHhhC----CCCcEEEEEcCCCchhHHHHHHHh
Q 014134 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL----PDVPILALTATAAPKVQKDVMESL 215 (430)
Q Consensus 157 ~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~----~~~~~i~~SAT~~~~~~~~~~~~~ 215 (430)
...++|+||=+-+... -...+..+..+.... +...++.+|||........+...+
T Consensus 298 ~~~D~VLIDTaGr~~r----d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHR----NLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCcc----CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 4578999998765422 223445555555443 234589999999987666555544
No 273
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.93 E-value=0.056 Score=53.46 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=15.6
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
+++++.+|+|+|||..+-
T Consensus 89 ~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 579999999999997653
No 274
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.13 Score=45.50 Aligned_cols=56 Identities=9% Similarity=0.039 Sum_probs=37.4
Q ss_pred cccccCCCCChHHHHHHHHHHhc--CCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHh
Q 014134 12 SQTQKNKPLHEKEALVKLLRWHF--GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~--g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~ 70 (430)
.+.+.+.+.+=.+..+..++++. ..++|--|+.-.+ .-.+.+|+.+++|+|||+.+
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGi---kpPKGVIlyG~PGTGKTLLA 236 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGI---KPPKGVILYGEPGTGKTLLA 236 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCC---CCCCeeEEeCCCCCchhHHH
Confidence 35566666666666666666543 4555655555433 23578999999999999754
No 275
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.92 E-value=0.089 Score=50.47 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=15.6
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
.++++.||+|+|||....
T Consensus 56 ~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 579999999999997654
No 276
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.91 E-value=0.04 Score=50.65 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=28.1
Q ss_pred CccchHHHHHHHHHHHc----CC---CEEEEcCCCChHHHHhH
Q 014134 36 HAQFRDKQLDAIQAVLS----GR---DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 36 ~~~~~~~Q~~~~~~l~~----~~---~~lv~a~tGsGKT~~~~ 71 (430)
+..+.|||..++..+.. ++ .+++.||.|+||+..+.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~ 44 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVAL 44 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH
Confidence 35688999999988763 33 48899999999996553
No 277
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.26 Score=43.06 Aligned_cols=78 Identities=10% Similarity=0.119 Sum_probs=45.9
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHH-cCCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHH
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~-~~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~ 91 (430)
+.....+.+=+.+.+..+.+.--..-+.| .+-+..-. -.+.+++-+|+|+|||+++ -++.++..-+.|=+--.+|+
T Consensus 172 pdvty~dvggckeqieklrevve~pll~p--erfv~lgidppkgvllygppgtgktl~a-ravanrtdacfirvigselv 248 (435)
T KOG0729|consen 172 PDVTYSDVGGCKEQIEKLREVVELPLLHP--ERFVNLGIDPPKGVLLYGPPGTGKTLCA-RAVANRTDACFIRVIGSELV 248 (435)
T ss_pred CCcccccccchHHHHHHHHHHHhccccCH--HHHhhcCCCCCCceEEeCCCCCchhHHH-HHHhcccCceEEeehhHHHH
Confidence 34455666777777777776422222222 22222111 2378999999999999986 34455555556655566776
Q ss_pred HH
Q 014134 92 EN 93 (430)
Q Consensus 92 ~q 93 (430)
+.
T Consensus 249 qk 250 (435)
T KOG0729|consen 249 QK 250 (435)
T ss_pred HH
Confidence 53
No 278
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.90 E-value=0.086 Score=50.24 Aligned_cols=56 Identities=14% Similarity=0.022 Sum_probs=30.4
Q ss_pred cccCCCCChHHHHHHHHHHhc--CCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHH
Q 014134 14 TQKNKPLHEKEALVKLLRWHF--GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~--g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~ 72 (430)
...|.+++-.+.....+.+.. .+..+.-++...+ ...+.+++.||+|+|||..+-.
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl---~~pkgvLL~GppGTGKT~LAka 198 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI---DPPRGVLLYGPPGTGKTMLAKA 198 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC---CCCceEEEECCCCCCHHHHHHH
Confidence 344555555555555555422 2222222222111 2357899999999999986643
No 279
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.89 E-value=0.077 Score=46.51 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCChHHHHh
Q 014134 53 GRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~ 70 (430)
++.+++.||+|+|||..+
T Consensus 42 ~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457999999999999543
No 280
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.88 E-value=0.081 Score=50.93 Aligned_cols=39 Identities=21% Similarity=0.155 Sum_probs=23.1
Q ss_pred CCEEEEcCCCChHHHHhHHh---hhcC--CCeEEEEcchHHHHHH
Q 014134 54 RDCFCLMPTGGGKSMCYQIP---ALAK--PGIVLVVSPLIALMEN 93 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~~---~l~~--~~~~lil~Pt~~L~~q 93 (430)
+.+++.||+|+|||...... +.++ +..++++. ...+..+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~~~~~~~ 180 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-SEKFTND 180 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-HHHHHHH
Confidence 35789999999999544211 1222 45666664 3344443
No 281
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.86 E-value=0.044 Score=56.39 Aligned_cols=77 Identities=19% Similarity=0.203 Sum_probs=65.9
Q ss_pred CCceEEEEeCccccHHHHHHHHHc----CCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc-ccccccccCceEEE
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~-~~~Gidi~~~~~vi 331 (430)
.+.+++|.++|+.-|.+.++.+++ .++.+..+||+++..+|..+++...+|+.+|+|+|.. +...++++++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 466899999999999988887765 3688999999999999999999999999999999975 44567788888888
Q ss_pred Ee
Q 014134 332 HF 333 (430)
Q Consensus 332 ~~ 333 (430)
.-
T Consensus 389 ID 390 (681)
T PRK10917 389 ID 390 (681)
T ss_pred Ee
Confidence 53
No 282
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.86 E-value=0.11 Score=50.56 Aligned_cols=44 Identities=18% Similarity=-0.007 Sum_probs=26.2
Q ss_pred CCEEEEcCCCChHHHHhH-Hh-h-h--cCCCeEEEEcchHHHHHHHHHHH
Q 014134 54 RDCFCLMPTGGGKSMCYQ-IP-A-L--AKPGIVLVVSPLIALMENQVIGL 98 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~-~~-~-l--~~~~~~lil~Pt~~L~~q~~~~~ 98 (430)
+.+++.|++|+|||.... +. . . ..+.+++++.+ .++..+....+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHH
Confidence 458899999999994321 11 1 1 23456766554 55655544444
No 283
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.84 E-value=0.049 Score=49.14 Aligned_cols=33 Identities=12% Similarity=0.037 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHH----cCC-CEEEEcCCCChHHHHhHH
Q 014134 40 RDKQLDAIQAVL----SGR-DCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 40 ~~~Q~~~~~~l~----~~~-~~lv~a~tGsGKT~~~~~ 72 (430)
++.+.+++..+. .+. .+++.||+|+|||.....
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRN 62 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 444555555543 233 588999999999977653
No 284
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.83 E-value=0.08 Score=51.37 Aligned_cols=57 Identities=26% Similarity=0.184 Sum_probs=36.7
Q ss_pred HHHHHHc-----CCCEEEEcCCCChHHHHhHHhh---hcCCCeEEEEcchHHHHHHHHHHHHHcCc
Q 014134 46 AIQAVLS-----GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (430)
Q Consensus 46 ~~~~l~~-----~~~~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 103 (430)
.++.++. |.-+++.+++|+|||...+..+ ..++.+++|+.- .+-..|+......++.
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~-Ees~~qi~~ra~rlg~ 132 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSG-EESASQIKLRAERLGL 132 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc-cccHHHHHHHHHHcCC
Confidence 3455554 3457899999999996544222 234678888874 3445666666666653
No 285
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.82 E-value=0.074 Score=50.74 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
.+.+++.||+|+|||..+-
T Consensus 165 p~gvLL~GppGtGKT~lAk 183 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAK 183 (389)
T ss_pred CCceEEECCCCCChHHHHH
Confidence 3679999999999997654
No 286
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.78 E-value=0.076 Score=44.56 Aligned_cols=138 Identities=17% Similarity=0.087 Sum_probs=70.0
Q ss_pred cCCCEEEEcCCCChHHHHhHH---hhhcCCCeEEEEcchHHHH-HHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcC
Q 014134 52 SGRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALM-ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~~---~~l~~~~~~lil~Pt~~L~-~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (430)
....+.+..++|.|||.+++- .++..+.+|+++-=.+--. .--...+..++ ...+...+...... . .
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~-~v~~~~~g~~~~~~-----~---~ 91 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGG-GVEFHVMGTGFTWE-----T---Q 91 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCC-CcEEEECCCCCccc-----C---C
Confidence 557899999999999987763 3446678888875333110 00011222211 11111110000000 0 0
Q ss_pred CCceeEEEECCccccCh-hHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCch
Q 014134 128 KPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (430)
Q Consensus 128 ~~~~~i~~~~~~~v~T~-~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~ 206 (430)
.. .+-.... .-+.........+.+++||+||+-...+.|. -+. ..+..++...|...-+.+|+--.+.
T Consensus 92 ~~--------~e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gl--i~~-eevi~~L~~rp~~~evVlTGR~~p~ 160 (191)
T PRK05986 92 DR--------ERDIAAAREGWEEAKRMLADESYDLVVLDELTYALKYGY--LDV-EEVLEALNARPGMQHVVITGRGAPR 160 (191)
T ss_pred Cc--------HHHHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCC--ccH-HHHHHHHHcCCCCCEEEEECCCCCH
Confidence 00 0000000 1122223344456799999999999888773 333 3344455666766677788776554
Q ss_pred hHH
Q 014134 207 VQK 209 (430)
Q Consensus 207 ~~~ 209 (430)
..-
T Consensus 161 ~Li 163 (191)
T PRK05986 161 ELI 163 (191)
T ss_pred HHH
Confidence 333
No 287
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.76 E-value=0.059 Score=55.31 Aligned_cols=77 Identities=21% Similarity=0.204 Sum_probs=64.7
Q ss_pred CCceEEEEeCccccHHHHHHHHHcC-CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEec
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~-~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~ 334 (430)
.+.++||.++++.-+.++++.|++. +..+..+||+++..+|........+|+.+|+|+|..... ..++++.+||.-+
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 3668999999999999999999874 778999999999999999999999999999999974332 4567788777544
No 288
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.74 E-value=0.052 Score=53.57 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=64.2
Q ss_pred CCceEEEEeCccccHHHHHHHHHcC-CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEec
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~-~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~ 334 (430)
.++++||.++++.-+.++++.|++. +..+..+||+++..+|........+|+.+|+|+|..+.. ..++++.+||.-+
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 4668999999999999999999874 677899999999999999999999999999999975432 4567778777543
No 289
>PHA02244 ATPase-like protein
Probab=95.73 E-value=0.093 Score=48.77 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=20.0
Q ss_pred HHHHHHcCCCEEEEcCCCChHHHHhH
Q 014134 46 AIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 46 ~~~~l~~~~~~lv~a~tGsGKT~~~~ 71 (430)
+...+..+.++++.||||+|||..+.
T Consensus 112 i~r~l~~~~PVLL~GppGtGKTtLA~ 137 (383)
T PHA02244 112 IAKIVNANIPVFLKGGAGSGKNHIAE 137 (383)
T ss_pred HHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 34445567899999999999996553
No 290
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.73 E-value=0.089 Score=51.31 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=15.0
Q ss_pred CEEEEcCCCChHHHHhHH
Q 014134 55 DCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~ 72 (430)
.+++.||+|+|||..+.+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999977643
No 291
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.71 E-value=0.063 Score=61.35 Aligned_cols=58 Identities=19% Similarity=0.178 Sum_probs=44.0
Q ss_pred ccchHHHHHHHHHHHcC--CCEEEEcCCCChHHHHh------HHhhhc-CCCeEEEEcchHHHHHHH
Q 014134 37 AQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCY------QIPALA-KPGIVLVVSPLIALMENQ 94 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~~~--~~~lv~a~tGsGKT~~~------~~~~l~-~~~~~lil~Pt~~L~~q~ 94 (430)
..+++.|.+|+..++.+ +-+++.++.|+|||.+. +..+.. .+..++.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHH
Confidence 36899999999998865 45678999999999765 122222 367899999998776654
No 292
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.70 E-value=0.05 Score=55.13 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=14.6
Q ss_pred CEEEEcCCCChHHHHhHH
Q 014134 55 DCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~ 72 (430)
-+|++||.|+|||.++.+
T Consensus 40 AyLFtGPpGvGKTTlAri 57 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRI 57 (830)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999976543
No 293
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.68 E-value=0.059 Score=53.11 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=14.9
Q ss_pred CEEEEcCCCChHHHHhHH
Q 014134 55 DCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~ 72 (430)
.+++.||.|+|||.++.+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~ 57 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRI 57 (509)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 369999999999977643
No 294
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.67 E-value=0.02 Score=59.42 Aligned_cols=63 Identities=19% Similarity=0.203 Sum_probs=49.5
Q ss_pred ccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhh---hcC----CCeEEEEcchHHHHHHHHHHHHHc
Q 014134 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LAK----PGIVLVVSPLIALMENQVIGLKEK 101 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~---l~~----~~~~lil~Pt~~L~~q~~~~~~~~ 101 (430)
..|++-|.+++.. ...+++|.|..|||||.+...-+ ++. ..++|+++.|+..|.++.+++.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4689999999864 45789999999999997754322 222 357999999999999998888774
No 295
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.67 E-value=0.039 Score=50.20 Aligned_cols=57 Identities=12% Similarity=0.104 Sum_probs=43.1
Q ss_pred CCccchHHHHHHHHHHHcCC-CEEEEcCCCChHHHHhH--HhhhcCCCeEEEEcchHHHH
Q 014134 35 GHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQ--IPALAKPGIVLVVSPLIALM 91 (430)
Q Consensus 35 g~~~~~~~Q~~~~~~l~~~~-~~lv~a~tGsGKT~~~~--~~~l~~~~~~lil~Pt~~L~ 91 (430)
.|..+++-|...+..+...+ |+++++.||||||...- ........+++.+=-|.||-
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELq 213 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQ 213 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhc
Confidence 45578999999988888765 99999999999996432 22223455899988888883
No 296
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.67 E-value=0.14 Score=49.70 Aligned_cols=40 Identities=15% Similarity=0.137 Sum_probs=23.6
Q ss_pred CCEEEEcCCCChHHHHhHHh---hhcC--CCeEEEEcchHHHHHHH
Q 014134 54 RDCFCLMPTGGGKSMCYQIP---ALAK--PGIVLVVSPLIALMENQ 94 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~~---~l~~--~~~~lil~Pt~~L~~q~ 94 (430)
+.+++.||+|+|||...... +... +.+++++.. ..+..+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~-~~f~~~~ 175 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-EKFLNDL 175 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-HHHHHHH
Confidence 46999999999999543211 1222 346676653 3444433
No 297
>CHL00176 ftsH cell division protein; Validated
Probab=95.67 E-value=0.11 Score=52.55 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=15.6
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
+++++.||+|+|||..+-
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 579999999999997653
No 298
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.64 E-value=0.092 Score=53.37 Aligned_cols=90 Identities=24% Similarity=0.192 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHhc--CCceEEEEeCccccHHHHHHHHHcCC--CcceeecCCCCHHHHHHHHHHhhcCCceEEEEecccc
Q 014134 244 DAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGG--ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (430)
Q Consensus 244 ~~~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~~--~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 319 (430)
.|.+...+++.+. .++.+||.++.+..+.++.+.|++.. ..+..+|+++++.+|.+...+..+|+.+|+|.|..+.
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv 251 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV 251 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE
Confidence 5666666666542 57789999999999999999998763 5689999999999999999999999999999997644
Q ss_pred ccccccCceEEEEec
Q 014134 320 MGIDRKDVRLVCHFN 334 (430)
Q Consensus 320 ~Gidi~~~~~vi~~~ 334 (430)
. .-+++...||.-+
T Consensus 252 F-aP~~~LgLIIvdE 265 (665)
T PRK14873 252 F-APVEDLGLVAIWD 265 (665)
T ss_pred E-eccCCCCEEEEEc
Confidence 3 4556667777544
No 299
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.62 E-value=0.15 Score=52.81 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=14.8
Q ss_pred EEEEcCCCChHHHHhHHh
Q 014134 56 CFCLMPTGGGKSMCYQIP 73 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~~~ 73 (430)
+++.||.|+|||.++.+.
T Consensus 41 yLFtGPpGtGKTTLARiL 58 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLF 58 (944)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 589999999999776543
No 300
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.60 E-value=0.1 Score=54.35 Aligned_cols=21 Identities=19% Similarity=0.361 Sum_probs=16.7
Q ss_pred CCCEEEEcCCCChHHHHhHHh
Q 014134 53 GRDCFCLMPTGGGKSMCYQIP 73 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~ 73 (430)
.+.+++.||+|+|||..+-..
T Consensus 487 ~~giLL~GppGtGKT~lakal 507 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAV 507 (733)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 357999999999999766433
No 301
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.59 E-value=0.024 Score=58.81 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=49.5
Q ss_pred ccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhh---hc-C---CCeEEEEcchHHHHHHHHHHHHHc
Q 014134 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LA-K---PGIVLVVSPLIALMENQVIGLKEK 101 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~---l~-~---~~~~lil~Pt~~L~~q~~~~~~~~ 101 (430)
..|++-|.+|+.. ...+++|.|..|||||.+...-+ ++ . ..++|+|+-|+..|.++.+++.++
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 3589999999864 45789999999999997754322 22 2 357999999999999999888774
No 302
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.58 E-value=0.085 Score=52.82 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=15.4
Q ss_pred CEEEEcCCCChHHHHhHHh
Q 014134 55 DCFCLMPTGGGKSMCYQIP 73 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~~ 73 (430)
.+++.||.|+|||.++.+.
T Consensus 39 AyLF~GPpGvGKTTlAriL 57 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARIL 57 (702)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4699999999999776443
No 303
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.57 E-value=0.22 Score=50.65 Aligned_cols=77 Identities=14% Similarity=0.079 Sum_probs=49.2
Q ss_pred CChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCC--CEEEEcCCCChHHHHhHHhh---hcCC--CeEEEEcchHHHHH
Q 014134 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQIPA---LAKP--GIVLVVSPLIALME 92 (430)
Q Consensus 20 ~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~--~~lv~a~tGsGKT~~~~~~~---l~~~--~~~lil~Pt~~L~~ 92 (430)
.+..+...+.+.+ ...+....-|.+.+..++..+ -+++.|.-|=|||.+.-+++ .... .+++|.+|+.+=++
T Consensus 197 ~~~~~~~~~~l~~-l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~ 275 (758)
T COG1444 197 PPLDPVFPRELYE-LCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQ 275 (758)
T ss_pred CCCCCCCCHHHhh-hhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHH
Confidence 4444545555665 344444444555566666553 58899999999998766333 2233 48999999987766
Q ss_pred HHHHH
Q 014134 93 NQVIG 97 (430)
Q Consensus 93 q~~~~ 97 (430)
...+-
T Consensus 276 ~Lf~f 280 (758)
T COG1444 276 TLFEF 280 (758)
T ss_pred HHHHH
Confidence 55543
No 304
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.54 E-value=0.04 Score=54.20 Aligned_cols=109 Identities=15% Similarity=0.079 Sum_probs=66.0
Q ss_pred HHHHHHHc-----CCCEEEEcCCCChHHHHhH---HhhhcCCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHH
Q 014134 45 DAIQAVLS-----GRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (430)
Q Consensus 45 ~~~~~l~~-----~~~~lv~a~tGsGKT~~~~---~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~ 116 (430)
..++.++. |.-+++.+|+|+|||...+ ...+.++.+++|++ ..+-..|+.+.+..+|....-
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s-~eEs~~~i~~~~~~lg~~~~~--------- 319 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA-YEESRAQLLRNAYSWGIDFEE--------- 319 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE-eeCCHHHHHHHHHHcCCChHH---------
Confidence 44555554 3568999999999996554 33346677888876 566777888888887643110
Q ss_pred HHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCcccc
Q 014134 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (430)
Q Consensus 117 ~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~ 171 (430)
... .....++...|....-...+..+.........+.||+|=...+.
T Consensus 320 --~~~------~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 320 --MEQ------QGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred --Hhh------CCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 000 01133333233222223355555555555567899999988763
No 305
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.53 E-value=0.012 Score=51.94 Aligned_cols=51 Identities=18% Similarity=0.025 Sum_probs=36.9
Q ss_pred CCCEEEEcCCCChHHHHhH---HhhhcCCCeEEEEcchHHHHHHHHHHHHHcCcc
Q 014134 53 GRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~---~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 104 (430)
|..+++.||+|+|||..++ ...+.++.+++|++ +.+-..|..+.+..+|..
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs-~ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA-LEEHPVQVRRNMAQFGWD 74 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE-eeCCHHHHHHHHHHhCCC
Confidence 4678999999999997654 33346678888887 445666777777776543
No 306
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.27 Score=48.18 Aligned_cols=55 Identities=13% Similarity=0.050 Sum_probs=33.2
Q ss_pred ccccCCCCChHHHHHHHHHHhc--CCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHh
Q 014134 13 QTQKNKPLHEKEALVKLLRWHF--GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~--g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~ 70 (430)
+...|.+.+-.+++-..|.... .+.+| -+.+++-. .....+++++|+|+|||+.+
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~p--d~~k~lGi-~~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRP--DLFKALGI-DAPSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCH--HHHHHhCC-CCCCceEEeCCCCccHHHHH
Confidence 4556777777777766666421 22222 22222211 12468999999999999865
No 307
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.50 E-value=0.14 Score=52.93 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
..++++.||+|+|||..+-
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3689999999999997653
No 308
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=95.49 E-value=0.069 Score=50.45 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=29.0
Q ss_pred CCccE-EEEecCccccccCCCcHHHHHHHHHHHhhCC--CCcEEEEEcCCCc
Q 014134 157 GLLNL-VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAP 205 (430)
Q Consensus 157 ~~~~~-lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~--~~~~i~~SAT~~~ 205 (430)
.+.++ ++|||||.+.+.. -...+..+..+.+... .+=++++|-+|..
T Consensus 253 dkPklVfFfDEAHLLF~da--~kall~~ieqvvrLIRSKGVGv~fvTQ~P~D 302 (502)
T PF05872_consen 253 DKPKLVFFFDEAHLLFNDA--PKALLDKIEQVVRLIRSKGVGVYFVTQNPTD 302 (502)
T ss_pred CCceEEEEEechhhhhcCC--CHHHHHHHHHHHHHhhccCceEEEEeCCCCC
Confidence 33555 6699999997643 4444455554444432 5558888887654
No 309
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.49 E-value=0.11 Score=53.95 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=15.3
Q ss_pred CCEEEEcCCCChHHHHh
Q 014134 54 RDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~ 70 (430)
+|+++.||+|+|||..+
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 58999999999999765
No 310
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.46 E-value=0.71 Score=44.52 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=29.1
Q ss_pred cEEEEecCccccccCCCcHHHHHHHHHHHhhC-CCCcEEEEEcCCCchhHHHH
Q 014134 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDV 211 (430)
Q Consensus 160 ~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~SAT~~~~~~~~~ 211 (430)
++||+|.+-+... -...+..+..+.... |..-++.++|+.........
T Consensus 177 DvVIIDTAGr~~~----d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a 225 (437)
T PRK00771 177 DVIIVDTAGRHAL----EEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQA 225 (437)
T ss_pred CEEEEECCCcccc----hHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHH
Confidence 7899999976432 223334444444332 45668888888876544433
No 311
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.44 E-value=0.062 Score=59.99 Aligned_cols=57 Identities=18% Similarity=0.185 Sum_probs=43.7
Q ss_pred cchHHHHHHHHHHHcC--CCEEEEcCCCChHHHHhH--Hhhhc-----CCCeEEEEcchHHHHHHH
Q 014134 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQ--IPALA-----KPGIVLVVSPLIALMENQ 94 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~--~~~lv~a~tGsGKT~~~~--~~~l~-----~~~~~lil~Pt~~L~~q~ 94 (430)
.+++.|.+|+..++.+ +-+++.+..|+|||.+.- ..++. .+..++.++||-.-+.++
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHH
Confidence 5899999999999975 468899999999997642 22322 245788899998776653
No 312
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.44 E-value=0.19 Score=43.90 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=25.7
Q ss_pred CCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHH
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q 93 (430)
.+|+++.+|+|+|||..+- ++.+....-++++...+|.-.
T Consensus 151 PknVLFyGppGTGKTm~Ak-alane~kvp~l~vkat~liGe 190 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAK-ALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred cceeEEECCCCccHHHHHH-HHhcccCCceEEechHHHHHH
Confidence 4799999999999997652 222333334555555555443
No 313
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.44 E-value=0.11 Score=48.93 Aligned_cols=49 Identities=27% Similarity=0.122 Sum_probs=31.5
Q ss_pred CCCEEEEcCCCChHHHHhHHhh---hcCCCeEEEEcchHHHHHHHHHHHHHcC
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKEKG 102 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~Pt~~L~~q~~~~~~~~~ 102 (430)
|.-+++.+++|+|||...+..+ ...+.+++|+.-. +-..|+......++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E-Es~~qi~~Ra~rlg 133 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE-ESPEQIKLRADRLG 133 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC-cCHHHHHHHHHHcC
Confidence 3457899999999997654322 2345678888653 33456655555554
No 314
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.44 E-value=0.028 Score=47.12 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=26.1
Q ss_pred cCCCEEEEcCCCChHHHHhHH---hhhcCCCeEEEEcchHHHHHHH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQ 94 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~~---~~l~~~~~~lil~Pt~~L~~q~ 94 (430)
++.++++.||+|+|||..+.. .++.++..+++ ++..+|.++.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLF-ITASDLLDEL 90 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEE-EEHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeE-eecCceeccc
Confidence 567999999999999955432 23455666666 4566676653
No 315
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.43 E-value=0.057 Score=55.18 Aligned_cols=62 Identities=21% Similarity=0.239 Sum_probs=48.4
Q ss_pred ccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhh---hc----CCCeEEEEcchHHHHHHHHHHHHH
Q 014134 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LA----KPGIVLVVSPLIALMENQVIGLKE 100 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~---l~----~~~~~lil~Pt~~L~~q~~~~~~~ 100 (430)
..+++-|.+|+-. ...+++|.|..|||||.+...-+ +. ...++++++.|+..|..+.+++..
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 3699999998853 44678999999999997765322 22 245899999999999998888765
No 316
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.42 E-value=0.12 Score=45.00 Aligned_cols=78 Identities=17% Similarity=0.106 Sum_probs=40.2
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCC-CEEEEcCCCChHHHHhH--HhhhcCCCeEEEEcchHH
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQ--IPALAKPGIVLVVSPLIA 89 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~-~~lv~a~tGsGKT~~~~--~~~l~~~~~~lil~Pt~~ 89 (430)
+...|+..|.+..+...+.- .-..=++.=..+-+.+..++ -+.++++.|||||...- ...+..+..++++.|-..
T Consensus 12 ~~~g~~~~pf~~~~~~~~~~--~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~ 89 (269)
T COG3267 12 NHFGFSRLPFSWDIQPGLDY--WAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPT 89 (269)
T ss_pred HHhhhccCCCccchhhhhhh--hhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcc
Confidence 44455555555555444442 11111111122333444565 67899999999997754 333344555554554443
Q ss_pred HHH
Q 014134 90 LME 92 (430)
Q Consensus 90 L~~ 92 (430)
+..
T Consensus 90 ~s~ 92 (269)
T COG3267 90 LSD 92 (269)
T ss_pred hhH
Confidence 433
No 317
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.42 E-value=0.14 Score=45.20 Aligned_cols=51 Identities=20% Similarity=0.081 Sum_probs=34.5
Q ss_pred CCCEEEEcCCCChHHHHhHHh---hhcCCCeEEEEcchHHHHHHHHHHHHHcCcc
Q 014134 53 GRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~---~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 104 (430)
|.-+++.|++|+|||...... .+.++.+++|+.-- +-..++.+.+.+++..
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e-~~~~~~~~~~~~~g~~ 78 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE-NTSKSYLKQMESVKID 78 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC-CCHHHHHHHHHHCCCC
Confidence 456889999999999655433 24567788887654 3345667777776643
No 318
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.38 E-value=1.1 Score=41.42 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=31.8
Q ss_pred cCCccEEEEecCccccccCCCcHHHHHHHHHHHh----hCCCCcEEEEEcCCCchhHHHHHH
Q 014134 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN----YLPDVPILALTATAAPKVQKDVME 213 (430)
Q Consensus 156 ~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~----~~~~~~~i~~SAT~~~~~~~~~~~ 213 (430)
....++||+|=+-++..... ....+..+.++.. ..|...++.++||...+.......
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~-l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~ 254 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTN-LMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA 254 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHH-HHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH
Confidence 35578999999988643111 2222233333322 124445899999977655444333
No 319
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.38 E-value=0.23 Score=43.99 Aligned_cols=43 Identities=19% Similarity=0.035 Sum_probs=29.2
Q ss_pred cCCCEEEEcCCCChHHHHhHHh---hhcC-CCeEEEEc---chHHHHHHH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQIP---ALAK-PGIVLVVS---PLIALMENQ 94 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~~~---~l~~-~~~~lil~---Pt~~L~~q~ 94 (430)
.|.-+++.|++|+|||...+-. .+.+ +.++++++ |..+++.++
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHH
Confidence 4566889999999999654422 2233 77888887 455565544
No 320
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.31 E-value=0.023 Score=55.94 Aligned_cols=38 Identities=32% Similarity=0.353 Sum_probs=31.5
Q ss_pred cchHHHHHHHHHHH----cCCCEEEEcCCCChHHHHhHHhhh
Q 014134 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPAL 75 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~----~~~~~lv~a~tGsGKT~~~~~~~l 75 (430)
+|+.+|.+.+..+. +|+-.|+.+|||||||+..+.+.+
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaal 56 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAAL 56 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHH
Confidence 58999998777654 588899999999999988776655
No 321
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=95.30 E-value=0.33 Score=44.85 Aligned_cols=140 Identities=13% Similarity=0.081 Sum_probs=75.0
Q ss_pred chHHHHHHHHHHHcCCC------EEEEcCCCChHHHHhHHhhhcCCCeEEEEcch-----HHHHHHHHHHHHHcCcceeE
Q 014134 39 FRDKQLDAIQAVLSGRD------CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL-----IALMENQVIGLKEKGIAGEF 107 (430)
Q Consensus 39 ~~~~Q~~~~~~l~~~~~------~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt-----~~L~~q~~~~~~~~~~~~~~ 107 (430)
.++.|...+..++.+++ +++.|.+|||||....-..-..+...+++.+- +-+-+++......
T Consensus 10 ~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~------- 82 (438)
T KOG2543|consen 10 CRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQL------- 82 (438)
T ss_pred chHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhcc-------
Confidence 57889999988886643 48999999999976543332334556666653 3343333333220
Q ss_pred eCCCchHHHHHHHHhhhhcCCCceeEEEECCccccC-hhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHH
Q 014134 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT-PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (430)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T-~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~ 186 (430)
.+..+.......+ .+.+ ...+..+......+.-=++|+|-++.+-|.+...-+.+-++.+
T Consensus 83 --~d~dg~~~~~~~e-----------------n~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~e 143 (438)
T KOG2543|consen 83 --ADKDGDKVEGDAE-----------------NFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYE 143 (438)
T ss_pred --CCCchhhhhhHHH-----------------HHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHH
Confidence 0000000000000 0110 0011111111111223379999999999987665555555555
Q ss_pred HHhhCCCCcEEEEEcCCCch
Q 014134 187 LRNYLPDVPILALTATAAPK 206 (430)
Q Consensus 187 ~~~~~~~~~~i~~SAT~~~~ 206 (430)
+.+. +.-.+.+|+++.++
T Consensus 144 l~~~--~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 144 LLNE--PTIVIILSAPSCEK 161 (438)
T ss_pred HhCC--CceEEEEeccccHH
Confidence 5543 23478888888776
No 322
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.29 E-value=1.2 Score=40.11 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=30.1
Q ss_pred CCccEEEEecCccccccCCCcHHHHHHHHHHHhh-------CCCCcEEEEEcCCCchhHHHHH
Q 014134 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-------LPDVPILALTATAAPKVQKDVM 212 (430)
Q Consensus 157 ~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~i~~SAT~~~~~~~~~~ 212 (430)
...++|++|=+-+... -...+..+..+... .+...++.++||..........
T Consensus 153 ~~~D~ViIDT~G~~~~----d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~ 211 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQN----KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAK 211 (272)
T ss_pred CCCCEEEEeCCCCCcc----hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHH
Confidence 4578999999887542 22222333333322 2455688999987665444333
No 323
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.29 E-value=0.1 Score=53.94 Aligned_cols=92 Identities=13% Similarity=0.174 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCC-----Cccee-ecCCCCHHHHHHHHHHhhcCCceEEEEec
Q 014134 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG-----ISCAA-YHAGLNDKARSSVLDDWISSRKQVVVATV 316 (430)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~-----~~~~~-~hg~~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (430)
...+-.+..+.....++++.+.++|..-+.++++.|++.. ..+.. +||.++.++++..+++|.+|+.+|||+|+
T Consensus 110 KTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs 189 (1187)
T COG1110 110 KTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTS 189 (1187)
T ss_pred hhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeH
Confidence 4445555666655677899999999999999998887642 33322 99999999999999999999999999997
Q ss_pred c-cccccc-cc--CceEEEEec
Q 014134 317 A-FGMGID-RK--DVRLVCHFN 334 (430)
Q Consensus 317 ~-~~~Gid-i~--~~~~vi~~~ 334 (430)
. +..-.| ++ ..++|+.-|
T Consensus 190 ~FL~k~~e~L~~~kFdfifVDD 211 (1187)
T COG1110 190 QFLSKRFEELSKLKFDFIFVDD 211 (1187)
T ss_pred HHHHhhHHHhcccCCCEEEEcc
Confidence 5 333333 23 356666544
No 324
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.27 E-value=0.26 Score=47.73 Aligned_cols=42 Identities=24% Similarity=0.017 Sum_probs=27.4
Q ss_pred CCCEEEEcCCCChHHHHhHHhh----hcCCCeEEEEc---chHHHHHHH
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVS---PLIALMENQ 94 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~----l~~~~~~lil~---Pt~~L~~q~ 94 (430)
|.=+++.|+||+|||...+-.+ ...+..+++++ |..+++..+
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl 242 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERL 242 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHH
Confidence 4557889999999996654222 24567788886 444554443
No 325
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.26 E-value=0.39 Score=44.89 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=15.0
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
++++.||+|+|||..+.
T Consensus 38 ~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVR 54 (337)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999997654
No 326
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.23 E-value=0.046 Score=55.75 Aligned_cols=77 Identities=21% Similarity=0.185 Sum_probs=65.2
Q ss_pred CCceEEEEeCccccHHHHHHHHHc----CCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccc-cccccccCceEEE
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-GMGIDRKDVRLVC 331 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~-~~Gidi~~~~~vi 331 (430)
.+.++++.++|+.-|.+.++.+++ .|+.+..+||+++..+|...++...+|+.+|+|+|..+ ...+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 466899999999999988887765 36889999999999999999999999999999999754 4457788888877
Q ss_pred Ee
Q 014134 332 HF 333 (430)
Q Consensus 332 ~~ 333 (430)
.-
T Consensus 363 ID 364 (630)
T TIGR00643 363 ID 364 (630)
T ss_pred Ee
Confidence 43
No 327
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.22 E-value=0.21 Score=45.45 Aligned_cols=17 Identities=18% Similarity=0.043 Sum_probs=15.1
Q ss_pred CCEEEEcCCCChHHHHh
Q 014134 54 RDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~ 70 (430)
.++++.||+|||||.++
T Consensus 59 ~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVA 75 (284)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 47999999999999776
No 328
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.20 E-value=0.12 Score=53.72 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.++.+++.||+|+|||..+
T Consensus 211 ~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCceEEEECCCCCChHHHH
Confidence 3578999999999999664
No 329
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.20 E-value=0.22 Score=49.69 Aligned_cols=43 Identities=19% Similarity=0.080 Sum_probs=24.9
Q ss_pred CCEEEEcCCCChHHHHhH-Hh--hhc--CCCeEEEEcchHHHHHHHHHH
Q 014134 54 RDCFCLMPTGGGKSMCYQ-IP--ALA--KPGIVLVVSPLIALMENQVIG 97 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~-~~--~l~--~~~~~lil~Pt~~L~~q~~~~ 97 (430)
+.+++.|++|+|||-... +. +.. .+.+++|+ +..+++++....
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yi-taeef~~el~~a 362 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYV-SSEEFTNEFINS 362 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe-eHHHHHHHHHHH
Confidence 348999999999994322 11 111 24566664 445565554433
No 330
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.16 E-value=0.27 Score=49.26 Aligned_cols=19 Identities=21% Similarity=0.127 Sum_probs=15.6
Q ss_pred CEEEEcCCCChHHHHhHHh
Q 014134 55 DCFCLMPTGGGKSMCYQIP 73 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~~ 73 (430)
.+|+.+|.|+|||.++.+.
T Consensus 40 a~Lf~GPpG~GKTtiAril 58 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIF 58 (624)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5789999999999876543
No 331
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.15 E-value=0.7 Score=43.34 Aligned_cols=120 Identities=12% Similarity=0.034 Sum_probs=59.1
Q ss_pred CCCEEEEcCCCChHHHHhHH-h--hhcCCCeEEEEc-ch-HH-HHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhc
Q 014134 53 GRDCFCLMPTGGGKSMCYQI-P--ALAKPGIVLVVS-PL-IA-LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDS 126 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~-~--~l~~~~~~lil~-Pt-~~-L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (430)
++.+++.+|+|+|||....- + +..++.++.+++ -+ |. -+.|+.......+....
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~-------------------- 265 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI-------------------- 265 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--------------------
Confidence 45678999999999965542 2 123455554443 22 22 23344433333322111
Q ss_pred CCCceeEEEECCccccChhHHHHHHHhh-hcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCC
Q 014134 127 GKPSLRLLYVTPELTATPGFMSKLKKIH-SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAA 204 (430)
Q Consensus 127 ~~~~~~i~~~~~~~v~T~~~~~~~~~~~-~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~ 204 (430)
...+|.-+....... .....++|++|=+-+.-. -...+..+..+..... ..-.+.+||+..
T Consensus 266 -------------~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~----d~~~l~EL~~l~~~~~p~~~~LVLsag~~ 328 (407)
T PRK12726 266 -------------VATSPAELEEAVQYMTYVNCVDHILIDTVGRNYL----AEESVSEISAYTDVVHPDLTCFTFSSGMK 328 (407)
T ss_pred -------------ecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcc----CHHHHHHHHHHhhccCCceEEEECCCccc
Confidence 123444333333222 224578999998877532 2333444444444322 223556677655
Q ss_pred chhHH
Q 014134 205 PKVQK 209 (430)
Q Consensus 205 ~~~~~ 209 (430)
.....
T Consensus 329 ~~d~~ 333 (407)
T PRK12726 329 SADVM 333 (407)
T ss_pred HHHHH
Confidence 54333
No 332
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.13 E-value=0.22 Score=48.97 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=16.3
Q ss_pred CCEEEEcCCCChHHHHhHHh
Q 014134 54 RDCFCLMPTGGGKSMCYQIP 73 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~~ 73 (430)
..++++||.|+|||.++.+.
T Consensus 44 ~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 36899999999999776543
No 333
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.13 E-value=0.14 Score=48.51 Aligned_cols=17 Identities=18% Similarity=0.174 Sum_probs=14.3
Q ss_pred EEEEcCCCChHHHHhHH
Q 014134 56 CFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~~ 72 (430)
+++.||+|+|||..+..
T Consensus 41 ~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 41 WLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEecCCCCCHHHHHHH
Confidence 68999999999976643
No 334
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.12 E-value=0.045 Score=56.40 Aligned_cols=60 Identities=13% Similarity=0.167 Sum_probs=47.1
Q ss_pred chHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhh---hcC----CCeEEEEcchHHHHHHHHHHHHH
Q 014134 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LAK----PGIVLVVSPLIALMENQVIGLKE 100 (430)
Q Consensus 39 ~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~---l~~----~~~~lil~Pt~~L~~q~~~~~~~ 100 (430)
+++-|.+++.. ...+++|.|++|||||.+.+.-+ +.. ..++++|+.|+..+.++.+++.+
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~ 68 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAK 68 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 78889998864 46799999999999997765322 322 35689999999999998888866
No 335
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.12 E-value=0.22 Score=42.23 Aligned_cols=113 Identities=17% Similarity=0.074 Sum_probs=47.5
Q ss_pred cCCCEEEEcCCCChHHHHhHHh---hhc----------CCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQIP---ALA----------KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKT 118 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~~~---~l~----------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (430)
.|.-.++.||+|+|||...+-. +.. +..+++++..-.. ..++.+++....... ......
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~~~-------~~~~~~ 102 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQDY-------DDDANL 102 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHTTS--------HHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhccc-------CCccce
Confidence 4556899999999999665421 222 3557888765444 445666665532111 111111
Q ss_pred HHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhc-CCccEEEEecCccccccC
Q 014134 119 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWG 174 (430)
Q Consensus 119 ~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~-~~~~~lViDE~h~~~~~~ 174 (430)
.... .... ....++.....-...+..+..+...... ...++||||=...+...+
T Consensus 103 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~ 157 (193)
T PF13481_consen 103 FFVD-LSNW-GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGD 157 (193)
T ss_dssp HHHH-H--E--EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-
T ss_pred EEee-cccc-ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCC
Confidence 1111 1111 1111110000011123344455554444 558999999999887643
No 336
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.11 E-value=0.26 Score=48.54 Aligned_cols=61 Identities=15% Similarity=0.114 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHc-----C----CCEEEEcCCCChHHHHhHHhh----h---cCCCeEEEEcchHHHHHHHHHHHHHc
Q 014134 41 DKQLDAIQAVLS-----G----RDCFCLMPTGGGKSMCYQIPA----L---AKPGIVLVVSPLIALMENQVIGLKEK 101 (430)
Q Consensus 41 ~~Q~~~~~~l~~-----~----~~~lv~a~tGsGKT~~~~~~~----l---~~~~~~lil~Pt~~L~~q~~~~~~~~ 101 (430)
|+|.-.+..++. + +.+++.-|=|-|||......+ + ..+..+++++++++-|..+.+.+..+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~ 77 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKM 77 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHH
Confidence 567766666651 2 357888899999995433211 1 24678999999999999999888774
No 337
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.10 E-value=0.18 Score=47.70 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=16.4
Q ss_pred CCCEEEEcCCCChHHHHhHH
Q 014134 53 GRDCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~ 72 (430)
.+.+++.||+|+|||..+-.
T Consensus 156 p~gvLL~GppGtGKT~laka 175 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKA 175 (364)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45799999999999976643
No 338
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=95.07 E-value=0.025 Score=54.04 Aligned_cols=55 Identities=25% Similarity=0.335 Sum_probs=44.1
Q ss_pred CEEEEcCCCChHHHHhHHhhh-cCCCeEEEEcchHHHHHHHHHHHHHcCcceeEeC
Q 014134 55 DCFCLMPTGGGKSMCYQIPAL-AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~~~l-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 109 (430)
++++.||||+|||..+++|.+ .....++|+=|.-++........+..|..+.++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~~s~vv~D~Kge~~~~t~~~r~~~G~~V~v~n 56 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWPGSVVVLDPKGENFELTSEHRRALGRKVFVFD 56 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCCCCEEEEccchhHHHHHHHHHHHcCCeEEEEc
Confidence 578999999999999887765 4567788888999999888877777776665554
No 339
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.05 E-value=0.15 Score=51.07 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=15.0
Q ss_pred EEEEcCCCChHHHHhHHh
Q 014134 56 CFCLMPTGGGKSMCYQIP 73 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~~~ 73 (430)
+++.||.|+|||.++.+.
T Consensus 38 ~Lf~Gp~G~GKTt~A~~l 55 (584)
T PRK14952 38 YLFSGPRGCGKTSSARIL 55 (584)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999776543
No 340
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.043 Score=51.19 Aligned_cols=18 Identities=39% Similarity=0.615 Sum_probs=15.6
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
.|+++.+|||+|||+.+-
T Consensus 227 SNvLllGPtGsGKTllaq 244 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQ 244 (564)
T ss_pred ccEEEECCCCCchhHHHH
Confidence 579999999999997664
No 341
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.04 E-value=0.079 Score=48.82 Aligned_cols=33 Identities=12% Similarity=0.060 Sum_probs=24.3
Q ss_pred chHHHHHHHHHHH----cCC---CEEEEcCCCChHHHHhH
Q 014134 39 FRDKQLDAIQAVL----SGR---DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 39 ~~~~Q~~~~~~l~----~~~---~~lv~a~tGsGKT~~~~ 71 (430)
+.|||+..+..+. +++ -.++.||.|.||+..+.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~ 42 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIR 42 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHH
Confidence 4678887777765 332 57799999999996653
No 342
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.04 E-value=0.085 Score=53.67 Aligned_cols=88 Identities=19% Similarity=0.174 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHhc--CCceEEEEeCccccHHHHHHHHHcC-CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecccc
Q 014134 243 DDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (430)
Q Consensus 243 ~~~~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~-~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 319 (430)
..|.+...+++.+. .++.+||.++.+....++.+.|+.+ |.++..+|+++++.+|.....+..+|+.+|+|.|..+-
T Consensus 228 SGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl 307 (730)
T COG1198 228 SGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL 307 (730)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh
Confidence 34555555555542 5789999999999999988888775 78899999999999999999999999999999997533
Q ss_pred ccccccCceEEE
Q 014134 320 MGIDRKDVRLVC 331 (430)
Q Consensus 320 ~Gidi~~~~~vi 331 (430)
- .-+++...||
T Consensus 308 F-~Pf~~LGLII 318 (730)
T COG1198 308 F-LPFKNLGLII 318 (730)
T ss_pred c-CchhhccEEE
Confidence 2 3455666666
No 343
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.03 E-value=0.14 Score=53.46 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=15.2
Q ss_pred EEEEcCCCChHHHHhHHh
Q 014134 56 CFCLMPTGGGKSMCYQIP 73 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~~~ 73 (430)
+|+.+|.|+|||.++.+.
T Consensus 40 ~Lf~Gp~G~GKTt~A~~l 57 (824)
T PRK07764 40 YLFSGPRGCGKTSSARIL 57 (824)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 789999999999876543
No 344
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.01 E-value=0.16 Score=51.18 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=14.4
Q ss_pred EEEEcCCCChHHHHhHH
Q 014134 56 CFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~~ 72 (430)
+++.||.|+|||.++.+
T Consensus 41 yLf~Gp~GvGKTTlAr~ 57 (647)
T PRK07994 41 YLFSGTRGVGKTTIARL 57 (647)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 58999999999977643
No 345
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.01 E-value=0.21 Score=50.51 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=15.2
Q ss_pred CEEEEcCCCChHHHHhHH
Q 014134 55 DCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~ 72 (430)
.+++.||.|+|||..+.+
T Consensus 40 a~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARI 57 (709)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 579999999999977643
No 346
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.00 E-value=0.033 Score=46.15 Aligned_cols=42 Identities=24% Similarity=0.154 Sum_probs=23.7
Q ss_pred EEEcCCCChHHHHhHHhhhc---C-CCeEEEEcchHHHHHHHHHHH
Q 014134 57 FCLMPTGGGKSMCYQIPALA---K-PGIVLVVSPLIALMENQVIGL 98 (430)
Q Consensus 57 lv~a~tGsGKT~~~~~~~l~---~-~~~~lil~Pt~~L~~q~~~~~ 98 (430)
++.|+-|-|||.+.-+.+.. . ..+++|.+|+.+=++...+.+
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~ 46 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFA 46 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHH
Confidence 57899999999877655532 2 247999999988776655443
No 347
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.98 E-value=0.23 Score=48.97 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=14.0
Q ss_pred EEEEcCCCChHHHHhH
Q 014134 56 CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~ 71 (430)
+++.||+|+|||.++.
T Consensus 39 ~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 39 YLFSGPRGVGKTTTAR 54 (504)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4999999999997764
No 348
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.92 E-value=0.18 Score=41.09 Aligned_cols=52 Identities=27% Similarity=0.326 Sum_probs=33.0
Q ss_pred HhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCch
Q 014134 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (430)
Q Consensus 152 ~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~ 206 (430)
.......+++||+||+-...+.|.- .. ..+..+.+..|...-+.+|+--.+.
T Consensus 89 ~~~~~~~~dLlVLDEi~~a~~~gli--~~-~~v~~ll~~rp~~~evIlTGr~~p~ 140 (159)
T cd00561 89 EAIASGEYDLVILDEINYALGYGLL--DV-EEVVDLLKAKPEDLELVLTGRNAPK 140 (159)
T ss_pred HHHhcCCCCEEEEechHhHhhCCCC--CH-HHHHHHHHcCCCCCEEEEECCCCCH
Confidence 3444567899999999988777642 22 3445555666655556666654443
No 349
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.90 E-value=0.46 Score=43.61 Aligned_cols=41 Identities=12% Similarity=0.049 Sum_probs=24.4
Q ss_pred CCCEEEEcCCCChHHHHhHH---hhhcCCCeEEEEcchHHHHHHH
Q 014134 53 GRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQ 94 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~---~~l~~~~~~lil~Pt~~L~~q~ 94 (430)
++++++.||+|+|||..+.. .+..++..+.++. .-+++.+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~-~~~l~~~l 199 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH-FPEFIREL 199 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE-HHHHHHHH
Confidence 45799999999999954321 1224455555542 23455443
No 350
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.90 E-value=0.18 Score=47.70 Aligned_cols=47 Identities=13% Similarity=0.212 Sum_probs=25.8
Q ss_pred CccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCch
Q 014134 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (430)
Q Consensus 158 ~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~ 206 (430)
.++++++|+++.+........+....+..+... +.|+++.|-.+|..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~--~kqIvltsdr~P~~ 221 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN--GKQIVLTSDRPPKE 221 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhc--CCEEEEEcCCCchh
Confidence 477999999999865432222333334433332 33555555555543
No 351
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=94.87 E-value=0.17 Score=48.81 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=16.3
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
.+.+++.||+|||||..+-
T Consensus 217 p~gVLL~GPPGTGKT~LAr 235 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAK 235 (438)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4679999999999998764
No 352
>PRK04328 hypothetical protein; Provisional
Probab=94.86 E-value=0.031 Score=49.76 Aligned_cols=50 Identities=18% Similarity=0.042 Sum_probs=34.6
Q ss_pred CCCEEEEcCCCChHHHHhH---HhhhcCCCeEEEEcchHHHHHHHHHHHHHcCc
Q 014134 53 GRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~---~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 103 (430)
|..+++.+++|+|||...+ ...+.++.+++|++ +.+-..+..+.+..+|.
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g~ 75 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQFGW 75 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHcCC
Confidence 4578899999999996544 33356677888876 44455566666777654
No 353
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.85 E-value=0.057 Score=59.35 Aligned_cols=61 Identities=23% Similarity=0.263 Sum_probs=47.6
Q ss_pred cchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhh---hcC---CCeEEEEcchHHHHHHHHHHHHH
Q 014134 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LAK---PGIVLVVSPLIALMENQVIGLKE 100 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~---l~~---~~~~lil~Pt~~L~~q~~~~~~~ 100 (430)
++|+-|.+++. ..+++++|.|..|||||.+..--+ +.. ..++++|+=|+..+.++.+++.+
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHH
Confidence 36889999997 368899999999999998765333 222 24599999999999887777655
No 354
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.83 E-value=0.1 Score=48.54 Aligned_cols=33 Identities=18% Similarity=0.030 Sum_probs=25.2
Q ss_pred chHHHHHHHHHHHc--C---CCEEEEcCCCChHHHHhH
Q 014134 39 FRDKQLDAIQAVLS--G---RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 39 ~~~~Q~~~~~~l~~--~---~~~lv~a~tGsGKT~~~~ 71 (430)
+.|||...+..+.. + ..+++.||.|.||+..+.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~ 39 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQ 39 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHH
Confidence 36788888888764 2 357899999999996654
No 355
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.80 E-value=1.5 Score=36.37 Aligned_cols=30 Identities=27% Similarity=0.159 Sum_probs=19.2
Q ss_pred EEEEcCCCChHHHHhHHhh---hcCCCeEEEEc
Q 014134 56 CFCLMPTGGGKSMCYQIPA---LAKPGIVLVVS 85 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~ 85 (430)
+++.+++|+|||......+ .+.+.+++++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5788999999997654222 23455555443
No 356
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.78 E-value=0.08 Score=55.94 Aligned_cols=77 Identities=10% Similarity=0.090 Sum_probs=65.1
Q ss_pred CCceEEEEeCccccHHHHHHHHHcC----CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc-ccccccccCceEEE
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~-~~~Gidi~~~~~vi 331 (430)
.+.+++|.++|+.-|.+.++.+++. ++.+..++|..+..++..+++.+++|+.+|+|+|.. +...+.+.++.++|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 4578999999999999999887763 567788999999999999999999999999999974 44567888888877
Q ss_pred Ee
Q 014134 332 HF 333 (430)
Q Consensus 332 ~~ 333 (430)
.-
T Consensus 579 ID 580 (926)
T TIGR00580 579 ID 580 (926)
T ss_pred ee
Confidence 53
No 357
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.31 Score=42.26 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=30.2
Q ss_pred HHHHhhhcCCccEEEEecCccccc-----cCCCcHHHHHHHHHHHhhCC------CCcEEEEEc
Q 014134 149 KLKKIHSRGLLNLVAIDEAHCISS-----WGHDFRPSYRKLSSLRNYLP------DVPILALTA 201 (430)
Q Consensus 149 ~~~~~~~~~~~~~lViDE~h~~~~-----~~~~~~~~~~~l~~~~~~~~------~~~~i~~SA 201 (430)
+.+.....+....+.+||+|.+.. ....-++.-+.+.+++++.. +.++|+.|.
T Consensus 239 dvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatn 302 (408)
T KOG0727|consen 239 DVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATN 302 (408)
T ss_pred HHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecC
Confidence 333333344466899999998843 12224455566666666653 445555443
No 358
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.76 E-value=0.079 Score=48.76 Aligned_cols=52 Identities=15% Similarity=0.228 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHHc-CCCEEEEcCCCChHHHHh--HHhhh---cCCCeEEEEcchHHH
Q 014134 39 FRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCY--QIPAL---AKPGIVLVVSPLIAL 90 (430)
Q Consensus 39 ~~~~Q~~~~~~l~~-~~~~lv~a~tGsGKT~~~--~~~~l---~~~~~~lil~Pt~~L 90 (430)
+++.|.+.+..+.. +++++++|+||||||... ++..+ ....+++.+=.+.||
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 56778877776654 579999999999999643 22222 124466666666665
No 359
>PRK06620 hypothetical protein; Validated
Probab=94.74 E-value=0.12 Score=44.80 Aligned_cols=18 Identities=17% Similarity=0.181 Sum_probs=14.8
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
+.++++||+|+|||-...
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999996543
No 360
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.72 E-value=0.38 Score=43.10 Aligned_cols=145 Identities=19% Similarity=0.131 Sum_probs=69.0
Q ss_pred CCCEEEEcCCCChHHHHhHHhh---hcC-CCeEEEEcc---hHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhh
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPA---LAK-PGIVLVVSP---LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLD 125 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~---l~~-~~~~lil~P---t~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (430)
|.=+++.|+||.|||..++-.+ +.+ +..++|++. ..+++..+........... +..................
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~-i~~g~l~~~e~~~~~~~~~ 97 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNK-IRSGDLSDEEFERLQAAAE 97 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHH-HHCCGCHHHHHHHHHHHHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhh-hhccccCHHHHHHHHHHHH
Confidence 3457889999999997655322 233 578898874 4555555444443321111 1111111111112211111
Q ss_pred cCCCceeEEE-ECCccccChhHHHHHHH-hhhc-CCccEEEEecCcccccc--CCCcHH----HHHHHHHHHhhCCCCcE
Q 014134 126 SGKPSLRLLY-VTPELTATPGFMSKLKK-IHSR-GLLNLVAIDEAHCISSW--GHDFRP----SYRKLSSLRNYLPDVPI 196 (430)
Q Consensus 126 ~~~~~~~i~~-~~~~~v~T~~~~~~~~~-~~~~-~~~~~lViDE~h~~~~~--~~~~~~----~~~~l~~~~~~~~~~~~ 196 (430)
.... ..+.+ .++. .|+..+..... .... ..+++||||=.|.+... ..+... ....++.+.... +.++
T Consensus 98 ~l~~-~~l~i~~~~~--~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~-~i~v 173 (259)
T PF03796_consen 98 KLSD-LPLYIEDTPS--LTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKEL-NIPV 173 (259)
T ss_dssp HHHT-SEEEEEESSS---BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHH-TSEE
T ss_pred HHhh-CcEEEECCCC--CCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHc-CCeE
Confidence 1111 12222 2222 24444444332 2223 67899999999998663 111222 223444444432 5667
Q ss_pred EEEEcC
Q 014134 197 LALTAT 202 (430)
Q Consensus 197 i~~SAT 202 (430)
+++|..
T Consensus 174 i~~sQl 179 (259)
T PF03796_consen 174 IALSQL 179 (259)
T ss_dssp EEEEEB
T ss_pred EEcccc
Confidence 766664
No 361
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.70 E-value=0.26 Score=52.05 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=15.6
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
++.++.||+|+|||..+-
T Consensus 200 ~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 589999999999997653
No 362
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.69 E-value=0.19 Score=41.55 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=34.5
Q ss_pred HhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchh
Q 014134 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (430)
Q Consensus 152 ~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~ 207 (430)
.......+++||+||+-...+.|. -+. ..+..++...|...-+.+|+.-.+..
T Consensus 91 ~~l~~~~~DlvVLDEi~~A~~~gl--i~~-~~v~~lL~~rp~~~evVlTGR~~p~~ 143 (173)
T TIGR00708 91 EMLADPELDLVLLDELTYALKYGY--LDV-EEVVEALQERPGHQHVIITGRGCPQD 143 (173)
T ss_pred HHHhcCCCCEEEehhhHHHHHCCC--cCH-HHHHHHHHhCCCCCEEEEECCCCCHH
Confidence 334456789999999998888773 333 33445556666666677777655543
No 363
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.69 E-value=1.3 Score=42.34 Aligned_cols=57 Identities=16% Similarity=0.072 Sum_probs=33.5
Q ss_pred cCCccEEEEecCccccccCCCcHHHHHHHHHHHhhC-CCCcEEEEEcCCCchhHHHHHHHhC
Q 014134 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLC 216 (430)
Q Consensus 156 ~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~ 216 (430)
....+.+++|.+-+.-. .......+..+.... +....+++|||........+...+.
T Consensus 267 l~~~d~VLIDTaGrsqr----d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~ 324 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQR----DQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQ 324 (420)
T ss_pred hcCCCEEEecCCCCCcc----hHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhc
Confidence 34467899998744211 222334454443322 2345788999988887776665553
No 364
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.67 E-value=0.72 Score=37.96 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=26.1
Q ss_pred CCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHH
Q 014134 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (430)
Q Consensus 157 ~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~ 209 (430)
+..+++|+||+|.+.... ...+...+...|..-.++|+++-...+..
T Consensus 101 ~~~KviiI~~ad~l~~~a------~NaLLK~LEepp~~~~fiL~t~~~~~il~ 147 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEA------QNALLKTLEEPPENTYFILITNNPSKILP 147 (162)
T ss_dssp SSSEEEEEETGGGS-HHH------HHHHHHHHHSTTTTEEEEEEES-GGGS-H
T ss_pred CCceEEEeehHhhhhHHH------HHHHHHHhcCCCCCEEEEEEECChHHChH
Confidence 347799999999986432 14444555555544455555554444433
No 365
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.63 E-value=0.19 Score=49.22 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
.+.+++.||+|||||+.+-
T Consensus 259 pkGILL~GPpGTGKTllAk 277 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAK 277 (489)
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3679999999999997663
No 366
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.61 E-value=1.4 Score=42.18 Aligned_cols=49 Identities=8% Similarity=0.220 Sum_probs=30.4
Q ss_pred CCccEEEEecCccccccCCCcHHHHHHHHHHHhhC-CCCcEEEEEcCCCchhHH
Q 014134 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQK 209 (430)
Q Consensus 157 ~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~SAT~~~~~~~ 209 (430)
...++||+|=+-+... -...+..+..+.... |...++.++|+.......
T Consensus 181 ~~~DvViIDTaGr~~~----d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~ 230 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQ----EDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA 230 (429)
T ss_pred CCCCEEEEECCCCCcc----hHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH
Confidence 3478899999987432 333445555554443 345588888887765443
No 367
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.61 E-value=0.024 Score=55.06 Aligned_cols=42 Identities=26% Similarity=0.391 Sum_probs=25.7
Q ss_pred cCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCC
Q 014134 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (430)
Q Consensus 156 ~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~ 204 (430)
.++.+..||||+|++.... |..++..+++ |...+++.=||-.
T Consensus 117 ~~ryKVyiIDEvHMLS~~a--fNALLKTLEE-----PP~hV~FIlATTe 158 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQA--FNALLKTLEE-----PPSHVKFILATTE 158 (515)
T ss_pred cccceEEEEecHHhhhHHH--HHHHhccccc-----CccCeEEEEecCC
Confidence 4557899999999987644 3333333322 3445666666643
No 368
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.59 E-value=0.055 Score=56.91 Aligned_cols=142 Identities=15% Similarity=0.094 Sum_probs=0.0
Q ss_pred CCCEEEEcCCCChHHHHhHHhhhcC---------------------CCeEEEEcchHHHHHHHHHHHHH---cCcceeEe
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPALAK---------------------PGIVLVVSPLIALMENQVIGLKE---KGIAGEFL 108 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~l~~---------------------~~~~lil~Pt~~L~~q~~~~~~~---~~~~~~~~ 108 (430)
|+++++.-..|.|||..-+...+.. .+-+||++|. ++..||..++.. .+.....+
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~Y 452 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLLY 452 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEEE
Q ss_pred CCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCC----------------------ccEEEEec
Q 014134 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGL----------------------LNLVAIDE 166 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~----------------------~~~lViDE 166 (430)
.+......... ..+...+++++|...+..-+.+-.... +=-|++||
T Consensus 453 ~Girk~~~~~~------------~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDE 520 (1394)
T KOG0298|consen 453 FGIRKTFWLSP------------FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDE 520 (1394)
T ss_pred echhhhcccCc------------hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhH
Q ss_pred CccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHh
Q 014134 167 AHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 215 (430)
Q Consensus 167 ~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 215 (430)
|+++-... ....++..+++....-.+|+||-.. ..++.-.+
T Consensus 521 aQMvesss-------S~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll 561 (1394)
T KOG0298|consen 521 AQMVESSS-------SAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLL 561 (1394)
T ss_pred HHhhcchH-------HHHHHHHHHhhhhceeeecCCchhh-hhhhHHHH
No 369
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.57 E-value=0.07 Score=55.55 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=48.9
Q ss_pred ccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhh---hcC----CCeEEEEcchHHHHHHHHHHHHHc
Q 014134 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LAK----PGIVLVVSPLIALMENQVIGLKEK 101 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~---l~~----~~~~lil~Pt~~L~~q~~~~~~~~ 101 (430)
..|++-|.+++.. ...+++|.|..|||||.+...-+ ++. ..++|+++-|+..+.++.+++.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 4689999999865 45789999999999997765322 222 247999999999999888888764
No 370
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.55 E-value=0.16 Score=50.77 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=15.0
Q ss_pred CEEEEcCCCChHHHHhHH
Q 014134 55 DCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~ 72 (430)
.++++||.|+|||.++-+
T Consensus 40 ayLf~Gp~GtGKTt~Ak~ 57 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKI 57 (559)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999977644
No 371
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.55 E-value=0.18 Score=50.63 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=14.9
Q ss_pred EEEEcCCCChHHHHhHHh
Q 014134 56 CFCLMPTGGGKSMCYQIP 73 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~~~ 73 (430)
++++||.|+|||.++.+.
T Consensus 41 ~Lf~Gp~GvGKTtlAr~l 58 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRIL 58 (618)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 599999999999776543
No 372
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=94.54 E-value=0.15 Score=44.81 Aligned_cols=91 Identities=14% Similarity=0.210 Sum_probs=68.4
Q ss_pred CCcceeecCCCCHHHHHHHHHHhhcCC----ceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCC-CCCCCc
Q 014134 282 GISCAAYHAGLNDKARSSVLDDWISSR----KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG-RDQLPS 356 (430)
Q Consensus 282 ~~~~~~~hg~~~~~~r~~~~~~f~~g~----~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~-R~g~~g 356 (430)
++.+..++++.+... -.|.++. ..|+|+-+.++||+-+++..+.....-+...+++.||.---| |.|-.+
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 466666665544332 2334333 779999999999999999999999999999999999875555 666678
Q ss_pred eEEEeeCccchHHHHHHHHhc
Q 014134 357 KSLLYYGMDDRRRMEFILSKN 377 (430)
Q Consensus 357 ~~i~~~~~~~~~~~~~~~~~~ 377 (430)
.|=++.+++-.+.+..+.+..
T Consensus 185 l~Ri~~~~~l~~~f~~i~~~~ 205 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAEAE 205 (239)
T ss_pred ceEEecCHHHHHHHHHHHHHH
Confidence 888888887777777775544
No 373
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=94.54 E-value=0.022 Score=62.07 Aligned_cols=94 Identities=20% Similarity=0.242 Sum_probs=77.3
Q ss_pred eEEEEeCccccHHHHHHHHHcCC-CcceeecCCCC-----------HHHHHHHHHHhhcCCceEEEEeccccccccccCc
Q 014134 260 CAIVYCLERTTCDELSAYLSAGG-ISCAAYHAGLN-----------DKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327 (430)
Q Consensus 260 ~~iVf~~s~~~~~~l~~~l~~~~-~~~~~~hg~~~-----------~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~ 327 (430)
..++|++.+..+....+.+++.. ..+..+.|.+. +..+.+++..|....+.+|++|+++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 46899999999988888887652 22333444432 2236789999999999999999999999999999
Q ss_pred eEEEEecCCCCHHHHHHHhccCCCCC
Q 014134 328 RLVCHFNIPKSMEAFYQESGRAGRDQ 353 (430)
Q Consensus 328 ~~vi~~~~p~s~~~~~q~~GR~~R~g 353 (430)
+.++.++.|.....|+|..||+.+..
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999997754
No 374
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.52 E-value=0.2 Score=49.67 Aligned_cols=17 Identities=18% Similarity=0.170 Sum_probs=14.5
Q ss_pred EEEEcCCCChHHHHhHH
Q 014134 56 CFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~~ 72 (430)
+++.||.|+|||..+..
T Consensus 41 ~Lf~Gp~GvGKTTlAr~ 57 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRL 57 (546)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 78999999999977643
No 375
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.44 Score=47.22 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=25.9
Q ss_pred CCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHH
Q 014134 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q 93 (430)
+.+++.||+|+|||+.+-......+...+-+-.. ++...
T Consensus 277 ~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-~l~sk 315 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-ELLSK 315 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-HHhcc
Confidence 5799999999999987765555444444444333 56543
No 376
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.46 E-value=0.089 Score=52.22 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=14.8
Q ss_pred CEEEEcCCCChHHHHhHH
Q 014134 55 DCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~ 72 (430)
.+++.||+|+|||.++.+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~ 57 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARI 57 (527)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999977644
No 377
>PRK06904 replicative DNA helicase; Validated
Probab=94.42 E-value=1.3 Score=43.49 Aligned_cols=33 Identities=24% Similarity=0.087 Sum_probs=21.7
Q ss_pred CCCEEEEcCCCChHHHHhHHh----hhcCCCeEEEEc
Q 014134 53 GRDCFCLMPTGGGKSMCYQIP----ALAKPGIVLVVS 85 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~----~l~~~~~~lil~ 85 (430)
|.=+++.|.||.|||..++-. +...+..+++++
T Consensus 221 G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fS 257 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFS 257 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEe
Confidence 345678899999999755311 123466777775
No 378
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.39 E-value=0.04 Score=54.20 Aligned_cols=56 Identities=30% Similarity=0.456 Sum_probs=44.9
Q ss_pred CCEEEEcCCCChHHHHhHHhhh-cCCCeEEEEcchHHHHHHHHHHHHHcCcceeEeC
Q 014134 54 RDCFCLMPTGGGKSMCYQIPAL-AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~~~l-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 109 (430)
.++++.||||||||..+++|.+ .....++|.=|--+|...+...+++.|..+.++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~~s~iV~D~KgEl~~~t~~~r~~~G~~V~vld 101 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYPGSMIVTDPKGELYEKTAGYRKKRGYKVYVLD 101 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhccCCEEEEECCCcHHHHHHHHHHHCCCEEEEee
Confidence 4799999999999999888765 4455788888999999988888888776655544
No 379
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.38 E-value=0.52 Score=45.10 Aligned_cols=120 Identities=14% Similarity=0.152 Sum_probs=78.0
Q ss_pred ceEEEEeCccccHHHHHHHHHc----CCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc------ccccccccCce
Q 014134 259 TCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA------FGMGIDRKDVR 328 (430)
Q Consensus 259 ~~~iVf~~s~~~~~~l~~~l~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~------~~~Gidi~~~~ 328 (430)
.-.+|.|+|++.|.++...-++ .|+.+..+||+.+..+...-++ -..-++|||+- --.++|+.+++
T Consensus 297 Pi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rvS 372 (731)
T KOG0339|consen 297 PIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRVS 372 (731)
T ss_pred CeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceeee
Confidence 3456778999988887766554 4788999999999888766654 34568999961 22478888888
Q ss_pred EEEEecC--------------------------------CCCHHHHHHHh---------ccCCCCCCCceEEEeeCccch
Q 014134 329 LVCHFNI--------------------------------PKSMEAFYQES---------GRAGRDQLPSKSLLYYGMDDR 367 (430)
Q Consensus 329 ~vi~~~~--------------------------------p~s~~~~~q~~---------GR~~R~g~~g~~i~~~~~~~~ 367 (430)
++++-.. +++++...|-+ |-+|-+|..=.-.+.+.+++.
T Consensus 373 ~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~ 452 (731)
T KOG0339|consen 373 YLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEE 452 (731)
T ss_pred EEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcH
Confidence 8774222 22333333322 222333333334556778888
Q ss_pred HHHHHHHHhccCCCC
Q 014134 368 RRMEFILSKNQSKNS 382 (430)
Q Consensus 368 ~~~~~~~~~~~~~~~ 382 (430)
..+.++++++....+
T Consensus 453 ~Kl~wl~~~L~~f~S 467 (731)
T KOG0339|consen 453 KKLNWLLRHLVEFSS 467 (731)
T ss_pred HHHHHHHHHhhhhcc
Confidence 889999888866543
No 380
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.35 E-value=0.15 Score=45.18 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=16.0
Q ss_pred CCEEEEcCCCChHHHHhHH
Q 014134 54 RDCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~ 72 (430)
.++++.+|+|.|||..+.+
T Consensus 53 DHvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred CeEEeeCCCCCcHHHHHHH
Confidence 4799999999999976544
No 381
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.28 E-value=0.18 Score=51.42 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=14.8
Q ss_pred CEEEEcCCCChHHHHhHH
Q 014134 55 DCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~ 72 (430)
..++.||.|+|||.++..
T Consensus 42 AYLF~GP~GtGKTt~Ari 59 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKI 59 (725)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 368999999999977643
No 382
>PRK10867 signal recognition particle protein; Provisional
Probab=94.27 E-value=2 Score=41.46 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHhH-Hhh--hcC-CCeEEEEc-c-hHHH-HHHHHHHHHHcC
Q 014134 56 CFCLMPTGGGKSMCYQ-IPA--LAK-PGIVLVVS-P-LIAL-MENQVIGLKEKG 102 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~-~~~--l~~-~~~~lil~-P-t~~L-~~q~~~~~~~~~ 102 (430)
+++++++|+|||.+.. ++. ..+ +.+++++. - .|.- .+|+.......+
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~g 156 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIG 156 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcC
Confidence 6789999999997654 222 233 55565553 2 3333 335444444444
No 383
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.25 E-value=0.27 Score=47.16 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=15.1
Q ss_pred CEEEEcCCCChHHHHhHH
Q 014134 55 DCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~ 72 (430)
.++++||+|+|||.++..
T Consensus 40 a~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARV 57 (397)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 388999999999977654
No 384
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.23 E-value=0.42 Score=50.68 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=15.6
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
++.++.||+|+|||..+-
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 689999999999997654
No 385
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.23 E-value=0.072 Score=46.87 Aligned_cols=15 Identities=27% Similarity=0.182 Sum_probs=12.7
Q ss_pred EEEEcCCCChHHHHh
Q 014134 56 CFCLMPTGGGKSMCY 70 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~ 70 (430)
++|.|++|+|||...
T Consensus 1 ~vv~G~pGsGKSt~i 15 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLI 15 (234)
T ss_pred CEEEcCCCCCHHHHH
Confidence 478999999999754
No 386
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.21 E-value=0.35 Score=46.06 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=27.0
Q ss_pred cCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHH
Q 014134 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (430)
Q Consensus 156 ~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~ 209 (430)
.+..+++||||+|.+.... . ..+.......|...++++++|-+.....
T Consensus 115 ~~~~kViiIDead~m~~~a--a----naLLk~LEep~~~~~fIL~a~~~~~llp 162 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA--A----NALLKAVEEPPPRTVWLLCAPSPEDVLP 162 (394)
T ss_pred cCCcEEEEEechhhcCHHH--H----HHHHHHhhcCCCCCeEEEEECChHHChH
Confidence 3456799999999986432 1 2233334444444455555554444443
No 387
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.15 E-value=1.1 Score=46.21 Aligned_cols=54 Identities=20% Similarity=0.162 Sum_probs=32.8
Q ss_pred CccEEEEecCccccccCCCcHHHHHHHHHHHhhC-CCCcEEEEEcCCCchhHHHHHHHh
Q 014134 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (430)
Q Consensus 158 ~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~ 215 (430)
..++|+||=+-+.-. .......+..+.... |...++.++||........+...+
T Consensus 263 ~~D~VLIDTAGRs~~----d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 263 DKHLVLIDTVGMSQR----DRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred CCCEEEEeCCCCCcc----CHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 457899998887532 233344444444322 345588899998776666555444
No 388
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.099 Score=48.24 Aligned_cols=58 Identities=21% Similarity=0.338 Sum_probs=35.8
Q ss_pred ccccCCCCChHHHHHHHHHHhc-------------CCccchHHHHHH------HHHHHcC-----CCEEEEcCCCChHHH
Q 014134 13 QTQKNKPLHEKEALVKLLRWHF-------------GHAQFRDKQLDA------IQAVLSG-----RDCFCLMPTGGGKSM 68 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~-------------g~~~~~~~Q~~~------~~~l~~~-----~~~lv~a~tGsGKT~ 68 (430)
....|...+...++...|++.. |...--..-.+| +|.+.+| +.++..+|+|||||+
T Consensus 181 ~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 181 EDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred ccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 4667778888888888888643 111111111121 2223344 689999999999997
Q ss_pred Hh
Q 014134 69 CY 70 (430)
Q Consensus 69 ~~ 70 (430)
.+
T Consensus 261 LA 262 (491)
T KOG0738|consen 261 LA 262 (491)
T ss_pred HH
Confidence 65
No 389
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.88 Score=46.40 Aligned_cols=61 Identities=15% Similarity=-0.003 Sum_probs=40.2
Q ss_pred ccCCCCChHHHHHHHHHHhcCCc-cchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcCC
Q 014134 15 QKNKPLHEKEALVKLLRWHFGHA-QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~~g~~-~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~~ 78 (430)
..|.+..-.++....|.+.-.|- +|-.||.... .--+.+++++|+|||||+.+-..+=+.+
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGA---KiPkGvLL~GPPGTGKTLLAKAiAGEAg 369 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGA---KIPKGVLLVGPPGTGKTLLAKAIAGEAG 369 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCC---cCcCceEEECCCCCcHHHHHHHHhcccC
Confidence 66777777777777777744433 4555555322 2247899999999999987644333333
No 390
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.78 Score=39.85 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=27.0
Q ss_pred cCCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALME 92 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~ 92 (430)
+.+.+++-+|+|+|||+.+-.- .++..-.+|=+.-.+|++
T Consensus 180 QPKGvlLygppgtGktLlaraV-ahht~c~firvsgselvq 219 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAV-AHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred CCcceEEecCCCCchhHHHHHH-HhhcceEEEEechHHHHH
Confidence 4578999999999999865333 333333455566667765
No 391
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.07 E-value=0.093 Score=48.81 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=27.4
Q ss_pred HcCCCEEEEcCCCChHHHHhH--HhhhcCCCeEEEEcchHHH
Q 014134 51 LSGRDCFCLMPTGGGKSMCYQ--IPALAKPGIVLVVSPLIAL 90 (430)
Q Consensus 51 ~~~~~~lv~a~tGsGKT~~~~--~~~l~~~~~~lil~Pt~~L 90 (430)
..+++++++||||||||...- +..+....+++.+=.+.||
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El 201 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLEL 201 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccc
Confidence 356899999999999996432 2223344567776677666
No 392
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.06 E-value=0.19 Score=46.24 Aligned_cols=34 Identities=15% Similarity=-0.017 Sum_probs=25.4
Q ss_pred cchHHHHHHHHHHHc----CC---CEEEEcCCCChHHHHhH
Q 014134 38 QFRDKQLDAIQAVLS----GR---DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~----~~---~~lv~a~tGsGKT~~~~ 71 (430)
.+.|||...+..+.+ ++ ..++.||.|.||+..+.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~ 43 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVE 43 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH
Confidence 356788888777653 33 58999999999996553
No 393
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=0.44 Score=41.56 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=18.9
Q ss_pred CCCEEEEcCCCChHHHHhHHhhhc
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPALA 76 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~l~ 76 (430)
.+.++.-+|+|+|||+.+-.++.+
T Consensus 205 PKGvLmYGPPGTGKTlmARAcAaq 228 (424)
T KOG0652|consen 205 PKGVLMYGPPGTGKTLMARACAAQ 228 (424)
T ss_pred CCceEeeCCCCCcHHHHHHHHHHh
Confidence 378999999999999877544443
No 394
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.03 E-value=0.18 Score=49.20 Aligned_cols=55 Identities=24% Similarity=0.186 Sum_probs=41.4
Q ss_pred CCCEEEEcCCCChHHHHhHHh---hh------cCCCeEEEEcchHHHHHHHHHHHHHcCcceeE
Q 014134 53 GRDCFCLMPTGGGKSMCYQIP---AL------AKPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~---~l------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 107 (430)
++-++|+|..|||||.+++-- ++ .....++|+.|.+....=+.+.+-++|.....
T Consensus 226 ~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeLGe~~V~ 289 (747)
T COG3973 226 NKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPELGEEGVV 289 (747)
T ss_pred CCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhhccCcee
Confidence 456899999999999887622 22 12445999999999998888888887765543
No 395
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=94.03 E-value=0.059 Score=54.01 Aligned_cols=56 Identities=21% Similarity=0.201 Sum_probs=46.8
Q ss_pred CCEEEEcCCCChHHHHhHHhhh-cCCCeEEEEcchHHHHHHHHHHHHHcCcceeEeC
Q 014134 54 RDCFCLMPTGGGKSMCYQIPAL-AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~~~l-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 109 (430)
.++++.||||||||..+++|-+ .....++|+=|--|+...+....++.|..+..+.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~~S~VV~DpKGEl~~~Ta~~R~~~G~~V~vfd 215 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWREKQGQKVFVWE 215 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEe
Confidence 5799999999999999998875 4466788888999999998888888887666554
No 396
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.24 Score=47.72 Aligned_cols=58 Identities=14% Similarity=0.240 Sum_probs=32.7
Q ss_pred ccccccCCCCC---hHHHHHHHHHHhcCCccchHHHHHHHHHHH-c-CCCEEEEcCCCChHHHHhH
Q 014134 11 TSQTQKNKPLH---EKEALVKLLRWHFGHAQFRDKQLDAIQAVL-S-GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 11 ~~~~~~~~~~~---~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~-~-~~~~lv~a~tGsGKT~~~~ 71 (430)
..+..+|++++ +..+...-+.+.|-..-+- -+.++.+- . -+.+++-+|+|||||+.+-
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFp---p~vie~lGi~HVKGiLLyGPPGTGKTLiAR 274 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFP---PEVIEQLGIKHVKGILLYGPPGTGKTLIAR 274 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCC---HHHHHHcCccceeeEEEECCCCCChhHHHH
Confidence 34567777774 4555555555543211111 11222211 1 2679999999999998763
No 397
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.96 E-value=0.34 Score=48.31 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=15.2
Q ss_pred CEEEEcCCCChHHHHhHH
Q 014134 55 DCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~ 72 (430)
.+++.||.|+|||..+..
T Consensus 40 A~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 488999999999977654
No 398
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=1.2 Score=43.99 Aligned_cols=54 Identities=11% Similarity=-0.056 Sum_probs=31.2
Q ss_pred cccCCCCChHHHHHHHHHHhc-CCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHh
Q 014134 14 TQKNKPLHEKEALVKLLRWHF-GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~-g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~ 70 (430)
..+|++++=.+.....|-+.. -+..|..++.-.+ .-.+.+++.+|+|+|||..+
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv---~PprGvLlHGPPGCGKT~lA 240 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGV---RPPRGVLLHGPPGCGKTSLA 240 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCC---CCCCceeeeCCCCccHHHHH
Confidence 345555544444444443322 2445555555332 12478999999999999654
No 399
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.95 E-value=0.14 Score=46.77 Aligned_cols=52 Identities=19% Similarity=0.338 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHH-cCCCEEEEcCCCChHHHHhH--HhhhcC---CCeEEEEcchHHH
Q 014134 39 FRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQ--IPALAK---PGIVLVVSPLIAL 90 (430)
Q Consensus 39 ~~~~Q~~~~~~l~-~~~~~lv~a~tGsGKT~~~~--~~~l~~---~~~~lil~Pt~~L 90 (430)
+++-|.+.+..+. .+++++++|+||||||...- +..+.. ..+++.+=.+.|+
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 4556666666655 45799999999999996532 222222 4567777777666
No 400
>PRK05748 replicative DNA helicase; Provisional
Probab=93.92 E-value=0.66 Score=45.29 Aligned_cols=33 Identities=15% Similarity=-0.050 Sum_probs=22.2
Q ss_pred CCCEEEEcCCCChHHHHhHHhh----hcCCCeEEEEc
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVS 85 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~----l~~~~~~lil~ 85 (430)
|.-+++.|+||.|||..++-.+ ...+..+++++
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fS 239 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFS 239 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEe
Confidence 3457889999999996554222 23466777765
No 401
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.92 E-value=0.52 Score=42.17 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=36.3
Q ss_pred ccEEEEecCccccccCCCcHHHHHHHHHHHhhCC--------CCcEEEEEcCCCchhHHHHHHHhC
Q 014134 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--------DVPILALTATAAPKVQKDVMESLC 216 (430)
Q Consensus 159 ~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~i~~SAT~~~~~~~~~~~~~~ 216 (430)
-+++|+||+|.+ ..+++..+.....+.| ++-.|++|.+-...+.+...+...
T Consensus 179 rslFIFDE~DKm------p~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~ 238 (344)
T KOG2170|consen 179 RSLFIFDEVDKL------PPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENAR 238 (344)
T ss_pred CceEEechhhhc------CHhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHHH
Confidence 458999999997 3445567777777655 344899998887766655555443
No 402
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=93.91 E-value=0.63 Score=46.76 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHH---cCCCEEEEcCCCChHHHHhHHhh---hc-CCCeEEEEcchHHHHHHHHHHHHH
Q 014134 40 RDKQLDAIQAVL---SGRDCFCLMPTGGGKSMCYQIPA---LA-KPGIVLVVSPLIALMENQVIGLKE 100 (430)
Q Consensus 40 ~~~Q~~~~~~l~---~~~~~lv~a~tGsGKT~~~~~~~---l~-~~~~~lil~Pt~~L~~q~~~~~~~ 100 (430)
+|.=.+=+..+. +.+-.++.+|=|.|||.+..+.+ +. .+.+++|.+|...-+.++.+.++.
T Consensus 171 ~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~ 238 (752)
T PHA03333 171 SPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVET 238 (752)
T ss_pred ChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHH
Confidence 444444444443 45678889999999997755332 22 478899999999888888877655
No 403
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=93.91 E-value=0.14 Score=47.70 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.7
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
.++++.||+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 579999999999997664
No 404
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.87 E-value=0.4 Score=48.55 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=15.6
Q ss_pred CCEEEEcCCCChHHHHhHH
Q 014134 54 RDCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~ 72 (430)
..+++.||.|+|||.++..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 4579999999999977643
No 405
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.84 E-value=0.11 Score=47.92 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHH-cCCCEEEEcCCCChHHHHhHHhhh------cCCCeEEEEcchHHH
Q 014134 39 FRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQIPAL------AKPGIVLVVSPLIAL 90 (430)
Q Consensus 39 ~~~~Q~~~~~~l~-~~~~~lv~a~tGsGKT~~~~~~~l------~~~~~~lil~Pt~~L 90 (430)
+++.|.+.+..+. .+++++++|+||||||... -+++ ....+++++-.+.++
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhcCCCceEEEEcCCCcc
Confidence 5677888777654 5679999999999999543 2222 234566666666655
No 406
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.83 E-value=0.17 Score=54.92 Aligned_cols=76 Identities=9% Similarity=0.096 Sum_probs=63.5
Q ss_pred CCceEEEEeCccccHHHHHHHHHcC----CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc-ccccccccCceEEE
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~-~~~Gidi~~~~~vi 331 (430)
.+.+++|.++|+.-|.++++.+++. ++.+..++|..+..++..+++.+++|..+|+|+|.. +...+++.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4678999999999999999888753 456778999999999999999999999999999964 44456777888777
Q ss_pred E
Q 014134 332 H 332 (430)
Q Consensus 332 ~ 332 (430)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 4
No 407
>PRK08840 replicative DNA helicase; Provisional
Probab=93.79 E-value=1.2 Score=43.53 Aligned_cols=33 Identities=18% Similarity=0.069 Sum_probs=22.0
Q ss_pred CCCEEEEcCCCChHHHHhHHh----hhcCCCeEEEEc
Q 014134 53 GRDCFCLMPTGGGKSMCYQIP----ALAKPGIVLVVS 85 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~----~l~~~~~~lil~ 85 (430)
|.=+++.|.||.|||..++-. +..++..++|++
T Consensus 217 g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fS 253 (464)
T PRK08840 217 SDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFS 253 (464)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEe
Confidence 445778999999999765311 223466777775
No 408
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=0.34 Score=45.12 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=15.6
Q ss_pred CCEEEEcCCCChHHHHh
Q 014134 54 RDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~ 70 (430)
+|+++-+|+|+|||+++
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 68999999999999876
No 409
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.74 E-value=0.74 Score=47.13 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=28.9
Q ss_pred cEEEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCc
Q 014134 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAP 205 (430)
Q Consensus 160 ~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~ 205 (430)
=++|+|+.|.+.+.- .. ..+..+.+..| +...++.|-+-++
T Consensus 131 l~LVlDDyHli~~~~--l~---~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 131 LYLVLDDYHLISDPA--LH---EALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred eEEEeccccccCccc--HH---HHHHHHHHhCCCCeEEEEEeccCCC
Confidence 389999999997643 33 55566666666 6777777777554
No 410
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.74 E-value=1.4 Score=44.16 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhH--Hhhh---cCCCeEEEEcchHHHHHHHHH
Q 014134 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPAL---AKPGIVLVVSPLIALMENQVI 96 (430)
Q Consensus 22 ~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~--~~~l---~~~~~~lil~Pt~~L~~q~~~ 96 (430)
..+.+.+.|+..|++..++.- ++ ...+.+-.++..|==.|||+... ++.+ ..+.+++|++|.+..++...+
T Consensus 227 ~a~r~~~~lk~~Fdi~~~s~~---~~-~~fkqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~ 302 (738)
T PHA03368 227 HAERVERFLRTVFNTPLFSDA---AV-RHFRQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFE 302 (738)
T ss_pred HHHHHHHHHHHHcCCccccHH---HH-HHhhccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHH
Confidence 445556666666676655422 22 23455778888899999997543 2212 358899999999999999998
Q ss_pred HHHHc
Q 014134 97 GLKEK 101 (430)
Q Consensus 97 ~~~~~ 101 (430)
++...
T Consensus 303 eI~~~ 307 (738)
T PHA03368 303 EIGAR 307 (738)
T ss_pred HHHHH
Confidence 88773
No 411
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=93.72 E-value=0.73 Score=38.25 Aligned_cols=55 Identities=24% Similarity=0.366 Sum_probs=37.2
Q ss_pred HHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhH
Q 014134 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (430)
Q Consensus 151 ~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~ 208 (430)
........+++||+||.-..+.+| +.+. ..+..+++..|..+-|.+|+.-.+...
T Consensus 115 ~~~l~~~~ydlviLDEl~~al~~g--~l~~-eeV~~~l~~kP~~~~vIiTGr~ap~~l 169 (198)
T COG2109 115 KEALADGKYDLVILDELNYALRYG--LLPL-EEVVALLKARPEHTHVIITGRGAPPEL 169 (198)
T ss_pred HHHHhCCCCCEEEEehhhHHHHcC--CCCH-HHHHHHHhcCCCCcEEEEECCCCCHHH
Confidence 344555679999999999888777 3333 444555666677777888886555433
No 412
>PRK05636 replicative DNA helicase; Provisional
Probab=93.72 E-value=0.9 Score=44.83 Aligned_cols=41 Identities=12% Similarity=0.026 Sum_probs=25.3
Q ss_pred CEEEEcCCCChHHHHhHHh----hhcCCCeEEEEc---chHHHHHHHH
Q 014134 55 DCFCLMPTGGGKSMCYQIP----ALAKPGIVLVVS---PLIALMENQV 95 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~~----~l~~~~~~lil~---Pt~~L~~q~~ 95 (430)
=+++.|.||.|||..++-. +...+..+++++ +..+++..+.
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~l 314 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLL 314 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHH
Confidence 4578999999999654422 223456677763 4555555443
No 413
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.61 E-value=0.078 Score=46.46 Aligned_cols=50 Identities=26% Similarity=0.200 Sum_probs=33.4
Q ss_pred CCCEEEEcCCCChHHHHhH---HhhhcC-CCeEEEEcchHHHHHHHHHHHHHcCc
Q 014134 53 GRDCFCLMPTGGGKSMCYQ---IPALAK-PGIVLVVSPLIALMENQVIGLKEKGI 103 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~---~~~l~~-~~~~lil~Pt~~L~~q~~~~~~~~~~ 103 (430)
|..+++.||+|+|||...+ ...+.+ +.++++++- .+-..++.+.+..+|.
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~-ee~~~~l~~~~~s~g~ 72 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF-EEPPEELIENMKSFGW 72 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES-SS-HHHHHHHHHTTTS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe-cCCHHHHHHHHHHcCC
Confidence 4678999999999996644 334566 788888874 3444667777777654
No 414
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=0.26 Score=51.73 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=37.3
Q ss_pred cccccCCCCChHHHHHHHHHHhcCCcc-chHHHHHHHHHHHcCCCEEEEcCCCChHHHHh
Q 014134 12 SQTQKNKPLHEKEALVKLLRWHFGHAQ-FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~g~~~-~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~ 70 (430)
.....|++.+........|++ +-+.. ++|-+.+-+ .+...+.+++++|+|||||+.+
T Consensus 259 ~~~v~fd~vggl~~~i~~LKE-mVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKE-MVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred hcccCccccccHHHHHHHHHH-HHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHHH
Confidence 357788899988888888888 33221 111111100 1223578999999999999765
No 415
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.55 E-value=0.18 Score=46.91 Aligned_cols=33 Identities=12% Similarity=0.099 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHHc----CC---CEEEEcCCCChHHHHhH
Q 014134 39 FRDKQLDAIQAVLS----GR---DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 39 ~~~~Q~~~~~~l~~----~~---~~lv~a~tGsGKT~~~~ 71 (430)
+.|||...+..+.+ ++ -.++.||.|.||+..+.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~ 42 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHH
Confidence 56888888888753 32 57899999999996654
No 416
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.53 E-value=0.98 Score=48.57 Aligned_cols=32 Identities=25% Similarity=0.062 Sum_probs=22.1
Q ss_pred CCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEc
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~ 85 (430)
.+-++|.||.|+|||....-..-..+ .+.++.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~ 63 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYS 63 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEe
Confidence 35689999999999987655443333 555553
No 417
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.50 E-value=0.39 Score=43.57 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=14.6
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
+.+++.||||+|||....
T Consensus 195 ~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLA 212 (282)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357899999999996654
No 418
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.48 E-value=0.15 Score=45.76 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=27.5
Q ss_pred HHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcCCCeEEEE
Q 014134 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (430)
Q Consensus 44 ~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil 84 (430)
.+++..+..+.++++.||+|+|||..+..-.-..+...+.+
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i 52 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLI 52 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34455566789999999999999977653332234444444
No 419
>PF05729 NACHT: NACHT domain
Probab=93.44 E-value=0.5 Score=38.70 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=13.5
Q ss_pred EEEEcCCCChHHHHhH
Q 014134 56 CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~ 71 (430)
+++.|++|+|||....
T Consensus 3 l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEECCCCCChHHHHH
Confidence 6899999999997543
No 420
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=1.3 Score=44.92 Aligned_cols=55 Identities=11% Similarity=0.029 Sum_probs=31.3
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHc-CCCEEEEcCCCChHHHHh
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~-~~~~lv~a~tGsGKT~~~ 70 (430)
+...|.+.+=.++....+.+..+. |-.+- +.+..=++ +..+++-||+|||||+.+
T Consensus 667 PnV~WdDVGGLeevK~eIldTIql--PL~hp-eLfssglrkRSGILLYGPPGTGKTLlA 722 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQL--PLKHP-ELFSSGLRKRSGILLYGPPGTGKTLLA 722 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcC--cccCh-hhhhccccccceeEEECCCCCchHHHH
Confidence 455667766666665555543221 11010 22222223 457899999999999876
No 421
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.41 E-value=2.7 Score=40.52 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=20.2
Q ss_pred CEEEEcCCCChHHHHhH-Hhh-h--cCCCeEEEEc
Q 014134 55 DCFCLMPTGGGKSMCYQ-IPA-L--AKPGIVLVVS 85 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~-~~~-l--~~~~~~lil~ 85 (430)
-+++++++|+|||.+.. ++. + ..+.+++++.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~ 135 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVA 135 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 37899999999997754 222 2 2455665553
No 422
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.39 E-value=7.1 Score=38.25 Aligned_cols=56 Identities=20% Similarity=0.153 Sum_probs=29.9
Q ss_pred cCCccEEEEecCccccccCCCcHHHHHHHHHHHhhC-CCCcEEEEEcCCCchhHHHHHHHh
Q 014134 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (430)
Q Consensus 156 ~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~ 215 (430)
+...+++++|.+-+.-. .......+..+.... |....+.++||............+
T Consensus 332 L~d~d~VLIDTaGr~~~----d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f 388 (484)
T PRK06995 332 LRNKHIVLIDTIGMSQR----DRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAY 388 (484)
T ss_pred ccCCCeEEeCCCCcChh----hHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHh
Confidence 34457899999765321 111112222222211 333588899998887666555444
No 423
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.33 E-value=2 Score=39.26 Aligned_cols=125 Identities=14% Similarity=0.091 Sum_probs=66.8
Q ss_pred EEEEcCCCChHHHHhHH---hhhcCCCeEEEEc--chHHHHHHHHHHH-HHcCcceeEeCCCchHHHHHHHHhhhhcCCC
Q 014134 56 CFCLMPTGGGKSMCYQI---PALAKPGIVLVVS--PLIALMENQVIGL-KEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~~---~~l~~~~~~lil~--Pt~~L~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (430)
+++.+..|+|||.+..- ...+++.++++.+ -.|+-|.++.+.| +..|....-.. ...+.....+
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~--~G~DpAaVaf-------- 211 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGK--EGADPAAVAF-------- 211 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccC--CCCCcHHHHH--------
Confidence 67899999999977542 2235567776665 2455555444444 44454433211 1111111111
Q ss_pred ceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhC----CCCcEEEEEcCCCc
Q 014134 130 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL----PDVPILALTATAAP 205 (430)
Q Consensus 130 ~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~----~~~~~i~~SAT~~~ 205 (430)
+-...-....+++|++|=|-++-+.. ++...+..+.++.... |..-++.+=||..+
T Consensus 212 -------------------DAi~~Akar~~DvvliDTAGRLhnk~-nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq 271 (340)
T COG0552 212 -------------------DAIQAAKARGIDVVLIDTAGRLHNKK-NLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ 271 (340)
T ss_pred -------------------HHHHHHHHcCCCEEEEeCcccccCch-hHHHHHHHHHHHhccccCCCCceEEEEEEcccCh
Confidence 22233334558899999999986522 1333334444444332 12235666899988
Q ss_pred hhHHH
Q 014134 206 KVQKD 210 (430)
Q Consensus 206 ~~~~~ 210 (430)
+....
T Consensus 272 nal~Q 276 (340)
T COG0552 272 NALSQ 276 (340)
T ss_pred hHHHH
Confidence 75543
No 424
>PHA02542 41 41 helicase; Provisional
Probab=93.28 E-value=1.7 Score=42.60 Aligned_cols=40 Identities=23% Similarity=0.047 Sum_probs=25.9
Q ss_pred CEEEEcCCCChHHHHhHHhh---hcCCCeEEEEc---chHHHHHHH
Q 014134 55 DCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVS---PLIALMENQ 94 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~---Pt~~L~~q~ 94 (430)
=+++.|+||.|||..++-.+ ...+..++++. |..+|+...
T Consensus 192 LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~Rl 237 (473)
T PHA02542 192 LNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAKRI 237 (473)
T ss_pred EEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHH
Confidence 36789999999997655222 34566777775 455554443
No 425
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.27 E-value=1.4 Score=42.84 Aligned_cols=64 Identities=16% Similarity=0.213 Sum_probs=34.9
Q ss_pred HHHHHHHhhhcCCccEEEEecCccccccCCCcHHHH--HHHH----HHHhhCCCCcEEEEEcCCCchhHH
Q 014134 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLS----SLRNYLPDVPILALTATAAPKVQK 209 (430)
Q Consensus 146 ~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~--~~l~----~~~~~~~~~~~i~~SAT~~~~~~~ 209 (430)
++.+++..-.......|.|||.|.+...-.+-...+ ..+. ++-..-++.-+|++-||--++..+
T Consensus 384 RVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 384 RVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred HHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 444555544444466899999999865221111111 1122 222223466799999996555433
No 426
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.18 E-value=1.9 Score=39.85 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.7
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
++++.||+|+|||.++.
T Consensus 40 ~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 40 HLLFAGPPGTGKTTAAL 56 (319)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 59999999999997653
No 427
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=93.15 E-value=0.12 Score=52.58 Aligned_cols=56 Identities=25% Similarity=0.237 Sum_probs=44.9
Q ss_pred CCEEEEcCCCChHHHHhHHhhh-cCCCeEEEEcchHHHHHHHHHHHHHcCcceeEeC
Q 014134 54 RDCFCLMPTGGGKSMCYQIPAL-AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~~~l-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 109 (430)
.++++.||||||||..+++|-+ .....++|+=|--++...+....++.|..+..+.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~gS~VV~DpKGE~~~~Ta~~R~~~G~~V~~Fn 196 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFKGSVIALDVKGELFELTSRARKASGDAVFKFA 196 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCCCCEEEEeCCchHHHHHHHHHHhCCCEEEEec
Confidence 4899999999999999998875 4466788888999998887777777776655443
No 428
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.14 E-value=0.55 Score=43.58 Aligned_cols=40 Identities=23% Similarity=0.176 Sum_probs=24.4
Q ss_pred CCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcC
Q 014134 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202 (430)
Q Consensus 157 ~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT 202 (430)
+...++|+||||.+.... -..+.......|....+++++.
T Consensus 108 ~~~kviiidead~mt~~A------~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTEDA------ANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHHH------HHHHHHHhccCCCCeEEEEEcC
Confidence 457899999999986521 1344444444454445555554
No 429
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.10 E-value=0.66 Score=46.72 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=15.8
Q ss_pred CEEEEcCCCChHHHHhHHh
Q 014134 55 DCFCLMPTGGGKSMCYQIP 73 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~~ 73 (430)
.+++.||.|+|||..+.+.
T Consensus 48 a~L~~Gp~GvGKTt~Ar~l 66 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARIL 66 (598)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5899999999999776543
No 430
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=93.09 E-value=0.38 Score=45.39 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=16.9
Q ss_pred cCCCEEEEcCCCChHHHHhH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~ 71 (430)
.|+.+++.||+|+|||....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~ 186 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQ 186 (415)
T ss_pred CCCEEEEECCCCCChhHHHH
Confidence 57889999999999997543
No 431
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.09 E-value=0.68 Score=47.35 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=15.9
Q ss_pred CCEEEEcCCCChHHHHhHH
Q 014134 54 RDCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~ 72 (430)
+.+++.+|+|+|||..+-.
T Consensus 186 ~gill~G~~G~GKt~~~~~ 204 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKA 204 (644)
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 5699999999999976543
No 432
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.08 E-value=0.14 Score=47.55 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=26.2
Q ss_pred HcCCCEEEEcCCCChHHHHh--HHhhhcCCCeEEEEcchHHH
Q 014134 51 LSGRDCFCLMPTGGGKSMCY--QIPALAKPGIVLVVSPLIAL 90 (430)
Q Consensus 51 ~~~~~~lv~a~tGsGKT~~~--~~~~l~~~~~~lil~Pt~~L 90 (430)
..+++++++|+||||||... ++..+....+++.+=-+.|+
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El 199 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREI 199 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCcc
Confidence 35689999999999999543 23333445566665444444
No 433
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.08 E-value=1.2 Score=44.45 Aligned_cols=143 Identities=14% Similarity=0.124 Sum_probs=72.6
Q ss_pred CCCCChHHHHHHHHHHhcC-CccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHH
Q 014134 17 NKPLHEKEALVKLLRWHFG-HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQV 95 (430)
Q Consensus 17 ~~~~~~~~~~~~~l~~~~g-~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~ 95 (430)
|.+..=.++....+++.-. ...|+.+|.-.. .-.+.+++.+|+|+|||+.+-.-+-+.+ +|+....-.
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGa---kiPkGvlLvGpPGTGKTLLAkAvAgEA~------VPFf~iSGS-- 217 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGA---KIPKGVLLVGPPGTGKTLLAKAVAGEAG------VPFFSISGS-- 217 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhccc---ccccceeEecCCCCCcHHHHHHHhcccC------CCceeccch--
Confidence 3333333344444444222 234666666432 2346899999999999987643333322 233222110
Q ss_pred HHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChh-HHHHHHHhhhcCCccEEEEecCcccccc-
Q 014134 96 IGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSW- 173 (430)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~-~~~~~~~~~~~~~~~~lViDE~h~~~~~- 173 (430)
+|-++ .|+-+. +..++...........+++||.|.+...
T Consensus 218 -~FVem--------------------------------------fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~R 258 (596)
T COG0465 218 -DFVEM--------------------------------------FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQR 258 (596)
T ss_pred -hhhhh--------------------------------------hcCCCcHHHHHHHHHhhccCCCeEEEehhhhccccc
Confidence 00000 333333 3334444333333468999999998541
Q ss_pred ----CCCcHHHHHHHHHHHhhC----CCCcEEEEEcCCCchhHH
Q 014134 174 ----GHDFRPSYRKLSSLRNYL----PDVPILALTATAAPKVQK 209 (430)
Q Consensus 174 ----~~~~~~~~~~l~~~~~~~----~~~~~i~~SAT~~~~~~~ 209 (430)
|......-..+..++-.. .+..++.+.||-.+++..
T Consensus 259 g~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 259 GAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred CCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 222222222333333322 255699999998887664
No 434
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=93.07 E-value=0.35 Score=51.22 Aligned_cols=77 Identities=10% Similarity=0.090 Sum_probs=67.2
Q ss_pred cCCceEEEEeCccccHHHHHHHHHcC----CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEe-ccccccccccCceEE
Q 014134 256 NGDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT-VAFGMGIDRKDVRLV 330 (430)
Q Consensus 256 ~~~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T-~~~~~Gidi~~~~~v 330 (430)
.+++++.|.++|---|++-++.|+++ ++++..++--.+.++...+++..++|+++|+|.| ..++.+|-+.+.-.+
T Consensus 641 ~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLl 720 (1139)
T COG1197 641 MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLL 720 (1139)
T ss_pred cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeE
Confidence 36789999999998898888888875 5667889999999999999999999999999999 467788889988888
Q ss_pred EE
Q 014134 331 CH 332 (430)
Q Consensus 331 i~ 332 (430)
|.
T Consensus 721 II 722 (1139)
T COG1197 721 II 722 (1139)
T ss_pred EE
Confidence 74
No 435
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.02 E-value=0.23 Score=45.76 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.1
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
.++++.||+|+|||..+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 469999999999996553
No 436
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=93.01 E-value=0.56 Score=46.77 Aligned_cols=78 Identities=22% Similarity=0.216 Sum_probs=65.4
Q ss_pred cCCceEEEEeCccccHHHHHHHH----HcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc-ccccccccCceEE
Q 014134 256 NGDTCAIVYCLERTTCDELSAYL----SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLV 330 (430)
Q Consensus 256 ~~~~~~iVf~~s~~~~~~l~~~l----~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~-~~~Gidi~~~~~v 330 (430)
..+.++..-++|.--|++-++.+ ...|+.+..+.|++..+.|.++++...+|+++++|.|.+ +...+++.+.-.|
T Consensus 309 ~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLV 388 (677)
T COG1200 309 EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLV 388 (677)
T ss_pred HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEE
Confidence 35778999999977666655544 456889999999999999999999999999999999976 5568999998888
Q ss_pred EEe
Q 014134 331 CHF 333 (430)
Q Consensus 331 i~~ 333 (430)
|.-
T Consensus 389 IiD 391 (677)
T COG1200 389 IID 391 (677)
T ss_pred EEe
Confidence 753
No 437
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.97 E-value=0.15 Score=49.02 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHHcCC--CEEEEcCCCChHHHHh
Q 014134 39 FRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCY 70 (430)
Q Consensus 39 ~~~~Q~~~~~~l~~~~--~~lv~a~tGsGKT~~~ 70 (430)
+.+.|.+.+..+++.. =+++.||||||||.+.
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTL 275 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTL 275 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHH
Confidence 4778888888887764 3678999999999764
No 438
>PRK08760 replicative DNA helicase; Provisional
Probab=92.97 E-value=0.71 Score=45.27 Aligned_cols=33 Identities=18% Similarity=-0.065 Sum_probs=21.8
Q ss_pred CCEEEEcCCCChHHHHhHHhh----hcCCCeEEEEcc
Q 014134 54 RDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSP 86 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~~~----l~~~~~~lil~P 86 (430)
.=+++.|.||.|||..++-.+ ...+..+++++.
T Consensus 230 ~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSl 266 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSM 266 (476)
T ss_pred ceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEec
Confidence 446789999999997654222 233566777753
No 439
>PRK09165 replicative DNA helicase; Provisional
Probab=92.91 E-value=0.84 Score=45.10 Aligned_cols=18 Identities=11% Similarity=-0.138 Sum_probs=14.3
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
.=+++.|+||.|||..++
T Consensus 218 ~livIaarpg~GKT~~al 235 (497)
T PRK09165 218 DLIILAGRPSMGKTALAT 235 (497)
T ss_pred ceEEEEeCCCCChHHHHH
Confidence 347889999999996554
No 440
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=92.86 E-value=0.44 Score=45.70 Aligned_cols=65 Identities=17% Similarity=0.281 Sum_probs=43.3
Q ss_pred cCCccchHHHHHHHHHHH----cCCCEEEEcCCCChHHHHhHHhhh-------cCCCeEEEEcchHHHHHHHHHHH
Q 014134 34 FGHAQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPAL-------AKPGIVLVVSPLIALMENQVIGL 98 (430)
Q Consensus 34 ~g~~~~~~~Q~~~~~~l~----~~~~~lv~a~tGsGKT~~~~~~~l-------~~~~~~lil~Pt~~L~~q~~~~~ 98 (430)
|.|....|-|.+-...+. .+.+.++.+|+|+|||.+.+--++ ....+.++-+-|..-.+....++
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El 87 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEEL 87 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHH
Confidence 678888888987665554 457999999999999976542222 12456777766654444444444
No 441
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.85 E-value=0.6 Score=47.06 Aligned_cols=18 Identities=22% Similarity=0.213 Sum_probs=14.8
Q ss_pred CEEEEcCCCChHHHHhHH
Q 014134 55 DCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~ 72 (430)
.+++.||.|+|||.++.+
T Consensus 40 ayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 40 AFLFTGARGVGKTSTARI 57 (576)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999977643
No 442
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=92.81 E-value=0.96 Score=41.92 Aligned_cols=32 Identities=9% Similarity=0.035 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHc--C---CCEEEEcCCCChHHHHhH
Q 014134 40 RDKQLDAIQAVLS--G---RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 40 ~~~Q~~~~~~l~~--~---~~~lv~a~tGsGKT~~~~ 71 (430)
.|||+..+..+.. + ..+++.||.|+|||..+.
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~ 39 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFAR 39 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHH
Confidence 5788888888773 2 258899999999996654
No 443
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.80 E-value=0.51 Score=43.45 Aligned_cols=60 Identities=13% Similarity=0.031 Sum_probs=34.2
Q ss_pred cccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHh
Q 014134 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP 73 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~ 73 (430)
...|.+++=.+.+...|++.--+.--+|-...--+.+...+.+++.+|+|+|||..+-.-
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~ 147 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAI 147 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHH
Confidence 455666776777777777632111112222211111223468999999999999876433
No 444
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.76 E-value=1.8 Score=36.53 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=14.3
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
.+++.||+|+|||..+.
T Consensus 16 ~~L~~G~~G~gkt~~a~ 32 (188)
T TIGR00678 16 AYLFAGPEGVGKELLAL 32 (188)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999996653
No 445
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.75 E-value=0.6 Score=41.86 Aligned_cols=23 Identities=35% Similarity=0.345 Sum_probs=16.4
Q ss_pred CEEEEcCCCChHHHH--hHHhhhcC
Q 014134 55 DCFCLMPTGGGKSMC--YQIPALAK 77 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~--~~~~~l~~ 77 (430)
=++|.+|||||||.+ +++--+++
T Consensus 127 LILVTGpTGSGKSTTlAamId~iN~ 151 (353)
T COG2805 127 LILVTGPTGSGKSTTLAAMIDYINK 151 (353)
T ss_pred eEEEeCCCCCcHHHHHHHHHHHHhc
Confidence 378999999999844 44444544
No 446
>PRK08506 replicative DNA helicase; Provisional
Probab=92.74 E-value=2 Score=42.12 Aligned_cols=32 Identities=19% Similarity=-0.034 Sum_probs=22.0
Q ss_pred CCEEEEcCCCChHHHHhHHhh---hcCCCeEEEEc
Q 014134 54 RDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVS 85 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~ 85 (430)
.-+++.|.||.|||..++-.+ ...+..+++++
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fS 227 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFS 227 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEe
Confidence 457789999999996654222 34566777775
No 447
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.70 E-value=0.069 Score=47.90 Aligned_cols=51 Identities=24% Similarity=0.273 Sum_probs=32.9
Q ss_pred ccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHH---------------------HcCCCEEEEcCCCChHHHHhH
Q 014134 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAV---------------------LSGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l---------------------~~~~~~lv~a~tGsGKT~~~~ 71 (430)
.....++.+.++...|.+ +=+. |.+|-..+ +...|+++.+|||||||+.+-
T Consensus 44 ~~~~~lPtP~eik~~Ld~-YVIG-----Qe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 44 KELSELPTPKEIKAHLDE-YVIG-----QEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred hhhccCCChHHHHHHhhh-heec-----chhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHH
Confidence 345567888888888886 5222 22221111 123579999999999997653
No 448
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.62 E-value=0.63 Score=47.07 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=14.9
Q ss_pred CEEEEcCCCChHHHHhHH
Q 014134 55 DCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~ 72 (430)
.+++.||.|+|||.++..
T Consensus 40 a~Lf~Gp~G~GKTtlA~~ 57 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARI 57 (585)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999977643
No 449
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=92.53 E-value=0.29 Score=45.45 Aligned_cols=30 Identities=17% Similarity=-0.120 Sum_probs=19.8
Q ss_pred CCEEEEcCCCChHHHHhHHhhhcCCCeEEE
Q 014134 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~~~l~~~~~~li 83 (430)
.-+++.+|+|+|||+.+-..+-+-+...+.
T Consensus 149 lgllL~GPPGcGKTllAraiA~elg~~~i~ 178 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKKMGIEPIV 178 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHcCCCeEE
Confidence 357899999999998765444333333333
No 450
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.52 E-value=2.2 Score=36.38 Aligned_cols=130 Identities=15% Similarity=0.076 Sum_probs=72.3
Q ss_pred CEEEEcCCCChHHHHh---HHhhhcCCCeEEEEc---chHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCC
Q 014134 55 DCFCLMPTGGGKSMCY---QIPALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~---~~~~l~~~~~~lil~---Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (430)
=+++.++.|+|||... ++-.++.+.++.+++ |+++...| ...++....- .-..+.
T Consensus 30 L~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~q----m~sl~ydv~~----------~~l~G~----- 90 (235)
T COG2874 30 LILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQ----MESLSYDVSD----------FLLSGR----- 90 (235)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHH----HHhcCCCchH----------HHhcce-----
Confidence 4789999999999653 345567788888776 44555444 3333322110 000000
Q ss_pred CceeEEEECCc-cccCh----hHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCC
Q 014134 129 PSLRLLYVTPE-LTATP----GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (430)
Q Consensus 129 ~~~~i~~~~~~-~v~T~----~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~ 203 (430)
..++-...+ +...+ ..+..+.+.....+-+++|+|-...+.... ........+..+......-++|++|+-+
T Consensus 91 --l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-~~~~vl~fm~~~r~l~d~gKvIilTvhp 167 (235)
T COG2874 91 --LLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-SEDAVLNFMTFLRKLSDLGKVIILTVHP 167 (235)
T ss_pred --eEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-cHHHHHHHHHHHHHHHhCCCEEEEEeCh
Confidence 111100000 12222 244455566666667899999998876533 2334445555555554467899999987
Q ss_pred Cch
Q 014134 204 APK 206 (430)
Q Consensus 204 ~~~ 206 (430)
..-
T Consensus 168 ~~l 170 (235)
T COG2874 168 SAL 170 (235)
T ss_pred hhc
Confidence 653
No 451
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.50 E-value=1.1 Score=47.40 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=21.0
Q ss_pred HHHHHHHHH----cC--CCEEEEcCCCChHHHHhH
Q 014134 43 QLDAIQAVL----SG--RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 43 Q~~~~~~l~----~~--~~~lv~a~tGsGKT~~~~ 71 (430)
|..-+..+. ++ ++.++.||+|+|||..+-
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~ 226 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVE 226 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHH
Confidence 555555544 32 589999999999997653
No 452
>PRK05595 replicative DNA helicase; Provisional
Probab=92.49 E-value=0.81 Score=44.61 Aligned_cols=33 Identities=18% Similarity=-0.006 Sum_probs=22.4
Q ss_pred CCEEEEcCCCChHHHHhHHh----hhcCCCeEEEEcc
Q 014134 54 RDCFCLMPTGGGKSMCYQIP----ALAKPGIVLVVSP 86 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~~----~l~~~~~~lil~P 86 (430)
.=+++.|.||.|||..++-. +..++.+++++..
T Consensus 202 ~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSl 238 (444)
T PRK05595 202 DMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSL 238 (444)
T ss_pred cEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEec
Confidence 34678999999999765422 2245677887754
No 453
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.47 E-value=0.69 Score=45.47 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=14.3
Q ss_pred EEEEcCCCChHHHHhHH
Q 014134 56 CFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~~ 72 (430)
.++.||.|+|||.++.+
T Consensus 41 yLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 41 YIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999977654
No 454
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.44 E-value=1.1 Score=43.69 Aligned_cols=56 Identities=21% Similarity=0.083 Sum_probs=36.0
Q ss_pred HHHHHHc-----CCCEEEEcCCCChHHHHhHHh---hhcCCCeEEEEcchHHHHHHHHHHHHHcC
Q 014134 46 AIQAVLS-----GRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKEKG 102 (430)
Q Consensus 46 ~~~~l~~-----~~~~lv~a~tGsGKT~~~~~~---~l~~~~~~lil~Pt~~L~~q~~~~~~~~~ 102 (430)
.++.++. |.-+++.+++|+|||...+.. +..++.+++|+..- +-..|+..+...++
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E-Es~~qi~~ra~rlg 145 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE-ESLQQIKMRAIRLG 145 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc-CCHHHHHHHHHHcC
Confidence 4555554 346789999999999765432 22445678888754 44556666666554
No 455
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.37 E-value=4.4 Score=41.01 Aligned_cols=56 Identities=13% Similarity=-0.041 Sum_probs=31.4
Q ss_pred ccCCCCChHHHHHHHHHHhcCCccchHHHHH-HHHHHHcCCCEEEEcCCCChHHHHhHH
Q 014134 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLD-AIQAVLSGRDCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~-~~~~l~~~~~~lv~a~tGsGKT~~~~~ 72 (430)
..|++.+=-.+....|.+..-+ |+.|-.- +--.+.....+++.||+|+|||+.+-.
T Consensus 664 i~w~digg~~~~k~~l~~~i~~--P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a 720 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEW--PSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASA 720 (952)
T ss_pred CCceecccHHHHHHHHHHHHhc--cccchHHHhhCCcccccceEEECCCCCcHHHHHHH
Confidence 5566666666666666653322 2222111 101112346899999999999975533
No 456
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=92.36 E-value=0.19 Score=50.97 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=46.0
Q ss_pred CCEEEEcCCCChHHHHhHHhhh-cCCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCC
Q 014134 54 RDCFCLMPTGGGKSMCYQIPAL-AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~~~l-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 110 (430)
.++++.||||+|||..+++|-+ .....++++=|..|+...+....++.|..+.++.-
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~~gS~VV~DpKgEl~~~Ta~~R~~~G~~V~vfdP 282 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKWGGPLVVLDPSTEVAPMVSEHRRDAGREVIVLDP 282 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEeC
Confidence 5899999999999999998876 44667888889999988777777777776665543
No 457
>PRK08006 replicative DNA helicase; Provisional
Probab=92.24 E-value=3.1 Score=40.76 Aligned_cols=42 Identities=17% Similarity=0.070 Sum_probs=25.6
Q ss_pred CCCEEEEcCCCChHHHHhHHhh----hcCCCeEEEEc---chHHHHHHH
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVS---PLIALMENQ 94 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~----l~~~~~~lil~---Pt~~L~~q~ 94 (430)
|.=+++.|.||.|||..++-.+ ...+..++|++ |..+++..+
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rl 272 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRM 272 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHH
Confidence 3446788999999997654221 23466777775 344444443
No 458
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.17 E-value=0.32 Score=41.08 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=26.3
Q ss_pred cchHHHHHHHHHHHc-CCCEEEEcCCCChHHHHh
Q 014134 38 QFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~-~~~~lv~a~tGsGKT~~~ 70 (430)
.+++-|.+.+....+ +..+++.+|||+|||...
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 466778888777664 678999999999999653
No 459
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=92.14 E-value=0.53 Score=41.72 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=17.1
Q ss_pred HcCCCEEEEcCCCChHHHHh
Q 014134 51 LSGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 51 ~~~~~~lv~a~tGsGKT~~~ 70 (430)
-.|+.+++.+|.|+|||...
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLl 33 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLL 33 (249)
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 46889999999999999643
No 460
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.00 E-value=0.67 Score=48.95 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=15.9
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
+++++.||+|+|||..+-
T Consensus 201 ~n~lL~G~pGvGKTal~~ 218 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAE 218 (821)
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 689999999999997663
No 461
>PRK14701 reverse gyrase; Provisional
Probab=91.99 E-value=0.55 Score=52.82 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=53.5
Q ss_pred CCceEEEEeCccccHHHHHHHHHcC------CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAG------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~ 317 (430)
++.+++|.++|+.-+.++++.|+.. +..+..+||+++..++..+++.+.+|+.+|||+|+.
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4568999999999999999988763 456788999999999999999999999999999975
No 462
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.98 E-value=1 Score=45.56 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=15.2
Q ss_pred CEEEEcCCCChHHHHhHH
Q 014134 55 DCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~ 72 (430)
.++++||.|+|||.++.+
T Consensus 40 a~Lf~Gp~GvGKttlA~~ 57 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARV 57 (620)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 488999999999977643
No 463
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=91.87 E-value=1.8 Score=39.04 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=24.1
Q ss_pred CCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHH
Q 014134 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALME 92 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~ 92 (430)
+-+++.+|+|+|||+-+-+.+..-+...|. ++..+|+.
T Consensus 167 kg~ll~GppGtGKTlla~~Vaa~mg~nfl~-v~ss~lv~ 204 (388)
T KOG0651|consen 167 KGLLLYGPPGTGKTLLARAVAATMGVNFLK-VVSSALVD 204 (388)
T ss_pred ceeEEeCCCCCchhHHHHHHHHhcCCceEE-eeHhhhhh
Confidence 568999999999998765444433433333 34445543
No 464
>PHA00350 putative assembly protein
Probab=91.83 E-value=0.85 Score=43.17 Aligned_cols=24 Identities=29% Similarity=0.149 Sum_probs=17.3
Q ss_pred EEEEcCCCChHHHHhH----HhhhcCCC
Q 014134 56 CFCLMPTGGGKSMCYQ----IPALAKPG 79 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~----~~~l~~~~ 79 (430)
.++.|.+|||||+.++ ++.+.++.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR 31 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGR 31 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCC
Confidence 4688999999997665 34455554
No 465
>PRK07004 replicative DNA helicase; Provisional
Probab=91.81 E-value=1.4 Score=43.05 Aligned_cols=43 Identities=21% Similarity=0.018 Sum_probs=27.1
Q ss_pred CCCEEEEcCCCChHHHHhHHh----hhcCCCeEEEEc---chHHHHHHHH
Q 014134 53 GRDCFCLMPTGGGKSMCYQIP----ALAKPGIVLVVS---PLIALMENQV 95 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~----~l~~~~~~lil~---Pt~~L~~q~~ 95 (430)
|.=+++.|.||+|||..++-. +...+..+++++ +..+|+..+.
T Consensus 213 g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~R~l 262 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRML 262 (460)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHH
Confidence 345778999999999755422 234466777765 4455555443
No 466
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=91.74 E-value=1.5 Score=42.76 Aligned_cols=41 Identities=15% Similarity=-0.091 Sum_probs=25.5
Q ss_pred CCCEEEEcCCCChHHHHhHHhh---h-cCCCeEEEEc---chHHHHHH
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPA---L-AKPGIVLVVS---PLIALMEN 93 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~---l-~~~~~~lil~---Pt~~L~~q 93 (430)
|.-+++.|+||+|||...+-.+ . ..+..+++++ |..+++..
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R 242 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMR 242 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHH
Confidence 3457889999999996554222 2 3456677775 34444443
No 467
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=91.71 E-value=3 Score=36.77 Aligned_cols=44 Identities=30% Similarity=0.360 Sum_probs=28.0
Q ss_pred EEEEcCCCChHHHHhHHhhh---------------cCCCeEEEEc---chHHHHHHHHHHHH
Q 014134 56 CFCLMPTGGGKSMCYQIPAL---------------AKPGIVLVVS---PLIALMENQVIGLK 99 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~~~~l---------------~~~~~~lil~---Pt~~L~~q~~~~~~ 99 (430)
.++.||.|+|||...+-.++ ....+|+|+. |..++...+.....
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~ 65 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQ 65 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHh
Confidence 58999999999976653322 1356788887 45555444444333
No 468
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=91.70 E-value=0.55 Score=46.71 Aligned_cols=51 Identities=18% Similarity=0.123 Sum_probs=35.4
Q ss_pred CCCEEEEcCCCChHHHHhHH---hhhcCCCeEEEEcchHHHHHHHHHHHHHcCcc
Q 014134 53 GRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~---~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 104 (430)
|.-+++.+++|+|||....- ..+..+.+++|++-. +-.+++.+.+..+|..
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e-~~~~~i~~~~~~~g~~ 326 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFE-ESRAQLIRNARSWGID 326 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec-CCHHHHHHHHHHcCCC
Confidence 45678899999999965542 234567788888643 4466777777777643
No 469
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=91.68 E-value=0.78 Score=43.18 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=16.5
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.|+..++.||.|+|||...
T Consensus 168 kGQR~lIvgppGvGKTTLa 186 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLL 186 (416)
T ss_pred cCceEEEeCCCCCChhHHH
Confidence 6789999999999999543
No 470
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=91.65 E-value=1.8 Score=35.83 Aligned_cols=52 Identities=25% Similarity=0.351 Sum_probs=28.9
Q ss_pred HhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCch
Q 014134 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (430)
Q Consensus 152 ~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~ 206 (430)
.......+++||+||+-...+.|. -.. ..+..++...|...=+.+|+--.+.
T Consensus 90 ~~i~~~~~dlvILDEi~~a~~~gl--l~~-~~v~~~l~~rp~~~evVlTGR~~~~ 141 (172)
T PF02572_consen 90 EAISSGEYDLVILDEINYAVDYGL--LSE-EEVLDLLENRPESLEVVLTGRNAPE 141 (172)
T ss_dssp HHTT-TT-SEEEEETHHHHHHTTS--S-H-HHHHHHHHTS-TT-EEEEE-SS--H
T ss_pred HHHhCCCCCEEEEcchHHHhHCCC--ccH-HHHHHHHHcCCCCeEEEEECCCCCH
Confidence 344456799999999999888774 322 3444555555655666677664443
No 471
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.64 E-value=0.15 Score=46.12 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=26.3
Q ss_pred cCCCEEEEcCCCChHHHHh--HHhhhcCC-CeEEEEcchHHH
Q 014134 52 SGRDCFCLMPTGGGKSMCY--QIPALAKP-GIVLVVSPLIAL 90 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~--~~~~l~~~-~~~lil~Pt~~L 90 (430)
.+++++++|+||||||... ++..+... .+++.+-.+.|+
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 4679999999999999654 22233444 677777666555
No 472
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=91.60 E-value=0.27 Score=49.57 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=44.4
Q ss_pred CCEEEEcCCCChHHHHhHHhhh-cCCCeEEEEcchHHHHHHHHHHHHHcC-cceeEeC
Q 014134 54 RDCFCLMPTGGGKSMCYQIPAL-AKPGIVLVVSPLIALMENQVIGLKEKG-IAGEFLS 109 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~~~l-~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~ 109 (430)
.++++.||||+|||..+.+|-+ .....++++=|.-|+...+...-++.| ..+.++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~~gS~VV~DpKgE~~~~Ta~~R~~~Gg~~V~vfd 269 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKYGGPLVCLDPSTEVAPMVCEHRRQAGNRKVIVLD 269 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcCCCCEEEEEChHHHHHHHHHHHHHcCCCcEEEEe
Confidence 5899999999999999999875 446788888999999887776666666 5555443
No 473
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=91.59 E-value=1.8 Score=40.71 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=14.3
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
.+++.||+|+|||..+.
T Consensus 38 ~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIAR 54 (355)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997653
No 474
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.56 E-value=2.4 Score=39.79 Aligned_cols=17 Identities=24% Similarity=0.133 Sum_probs=14.3
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
.+++.||.|+|||..+.
T Consensus 47 a~L~~G~~G~GKttlA~ 63 (351)
T PRK09112 47 ALLFEGPEGIGKATLAF 63 (351)
T ss_pred eEeeECCCCCCHHHHHH
Confidence 48999999999996553
No 475
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=91.50 E-value=0.48 Score=47.62 Aligned_cols=65 Identities=23% Similarity=0.212 Sum_probs=52.1
Q ss_pred CccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhh---hc------CCCeEEEEcchHHHHHHHHHHHHH
Q 014134 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LA------KPGIVLVVSPLIALMENQVIGLKE 100 (430)
Q Consensus 36 ~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~---l~------~~~~~lil~Pt~~L~~q~~~~~~~ 100 (430)
...+..-|..|+...+..+=.++++|+|||||.+.+.++ +. ....++++|-|...++|....+..
T Consensus 376 ~~ildsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 376 LVILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred ceeecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh
Confidence 334566799999999999999999999999998766543 22 245799999999999998887764
No 476
>PRK09087 hypothetical protein; Validated
Probab=91.42 E-value=1 Score=39.34 Aligned_cols=17 Identities=24% Similarity=0.217 Sum_probs=14.1
Q ss_pred CCEEEEcCCCChHHHHh
Q 014134 54 RDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~ 70 (430)
..+++.||+|+|||-..
T Consensus 45 ~~l~l~G~~GsGKThLl 61 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLA 61 (226)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34899999999999644
No 477
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=91.33 E-value=1.1 Score=43.01 Aligned_cols=45 Identities=9% Similarity=0.152 Sum_probs=30.7
Q ss_pred CEEEEcCCCChHHHHhHHhhh----c--CCCeEEEEcchHH-HHHHHHHHHH
Q 014134 55 DCFCLMPTGGGKSMCYQIPAL----A--KPGIVLVVSPLIA-LMENQVIGLK 99 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~~~l----~--~~~~~lil~Pt~~-L~~q~~~~~~ 99 (430)
-.++.|+.|||||.+....++ . .+.+++++-|+.. +..-+...+.
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~ 54 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIE 54 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHH
Confidence 357899999999977654433 3 6778899989876 4443344443
No 478
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.33 E-value=0.57 Score=41.96 Aligned_cols=50 Identities=16% Similarity=-0.025 Sum_probs=32.0
Q ss_pred CCCEEEEcCCCChHHHHhHHh---hhcCCCeEEEEcc---hHHHHHHHHHHHHHcC
Q 014134 53 GRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSP---LIALMENQVIGLKEKG 102 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~---~l~~~~~~lil~P---t~~L~~q~~~~~~~~~ 102 (430)
|.-+++.|++|+|||...+-. .+.++.+++|++- ...+.++..+....+|
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g 91 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMG 91 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcC
Confidence 456889999999999655432 2355778888873 3344444444445544
No 479
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.32 E-value=2.2 Score=38.81 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=12.7
Q ss_pred CCEEEEcCCCChHHH
Q 014134 54 RDCFCLMPTGGGKSM 68 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~ 68 (430)
+=+++.||+|+|||.
T Consensus 178 RliLlhGPPGTGKTS 192 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTS 192 (423)
T ss_pred eEEEEeCCCCCChhH
Confidence 347899999999993
No 480
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.16 E-value=1.5 Score=43.72 Aligned_cols=57 Identities=12% Similarity=0.043 Sum_probs=37.4
Q ss_pred ccccccCCCCChHHHHHHHHHHhc--CCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHh
Q 014134 11 TSQTQKNKPLHEKEALVKLLRWHF--GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~~~--g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~ 70 (430)
..+...|++.+=.+++.+.|++.- ....|-.+..-. +...+.+++.+|+|+|||+.+
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G---i~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG---ISPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc---CCCCceEEEECCCCcchHHHH
Confidence 345677888887778888887532 233332222222 123478999999999999876
No 481
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=91.14 E-value=2.4 Score=42.56 Aligned_cols=18 Identities=22% Similarity=0.242 Sum_probs=15.1
Q ss_pred CEEEEcCCCChHHHHhHH
Q 014134 55 DCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~ 72 (430)
.+++.||.|+|||.++..
T Consensus 40 ayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999977643
No 482
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.12 E-value=1.4 Score=44.77 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=25.0
Q ss_pred cCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcC
Q 014134 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202 (430)
Q Consensus 156 ~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT 202 (430)
.+..+++||||+|.+.... ...+.......|..-++++.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~a------~naLLK~LEepp~~tifIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA------FNAFLKTLEEPPSYAIFILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHHH------HHHHHHHHhCCCCCeEEEEEeC
Confidence 4457799999999985421 2344455555554445555555
No 483
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=91.07 E-value=2.3 Score=42.15 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=13.9
Q ss_pred EEEEcCCCChHHHHhH
Q 014134 56 CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~ 71 (430)
.++.||.|+|||.++.
T Consensus 39 yLf~Gp~G~GKTt~Ar 54 (535)
T PRK08451 39 YLFSGLRGSGKTSSAR 54 (535)
T ss_pred EEEECCCCCcHHHHHH
Confidence 5899999999997764
No 484
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=90.99 E-value=0.4 Score=44.73 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=35.1
Q ss_pred chHHHHHHHHHHHc-CCCEEEEcCCCChHHHHh--HHhhhcCCCeEEEEcchHHH
Q 014134 39 FRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCY--QIPALAKPGIVLVVSPLIAL 90 (430)
Q Consensus 39 ~~~~Q~~~~~~l~~-~~~~lv~a~tGsGKT~~~--~~~~l~~~~~~lil~Pt~~L 90 (430)
+++.+.+.+..+.. +++++++++||+|||... ++..+....+++++-.+.|+
T Consensus 163 ~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El 217 (340)
T TIGR03819 163 FPPGVARLLRAIVAARLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAEL 217 (340)
T ss_pred CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCccee
Confidence 45677777776655 579999999999999643 22233445566666666565
No 485
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=90.86 E-value=2.4 Score=41.34 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=15.0
Q ss_pred CEEEEcCCCChHHHHhHH
Q 014134 55 DCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~ 72 (430)
.+++.||+|+|||.++..
T Consensus 41 a~Lf~Gp~G~GKtt~A~~ 58 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARI 58 (451)
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 478999999999977643
No 486
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=90.85 E-value=0.87 Score=45.26 Aligned_cols=68 Identities=21% Similarity=0.255 Sum_probs=54.3
Q ss_pred EEEEeCccccHHHHHHHHHcC-----CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEec-----ccccc-ccccCceE
Q 014134 261 AIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKDVRL 329 (430)
Q Consensus 261 ~iVf~~s~~~~~~l~~~l~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~G-idi~~~~~ 329 (430)
+||.++|++-|.++++.+... ++.+..++|+++...+...+ +.| .+|+|+|+ .+.+| +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l---~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEAL---KRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHH---hcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999999888653 46688999999877766444 456 99999997 45555 88888888
Q ss_pred EEE
Q 014134 330 VCH 332 (430)
Q Consensus 330 vi~ 332 (430)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 884
No 487
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=90.76 E-value=0.34 Score=40.47 Aligned_cols=33 Identities=30% Similarity=0.174 Sum_probs=22.9
Q ss_pred EEEEcCCCChHHHHhHHhhh---cCCCeEEEEcchH
Q 014134 56 CFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLI 88 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt~ 88 (430)
.++.+|.+||||...+..+- ..+.++++..|..
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~i 42 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAI 42 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccc
Confidence 57899999999985543332 3466777777753
No 488
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=90.76 E-value=0.33 Score=40.25 Aligned_cols=43 Identities=16% Similarity=0.040 Sum_probs=30.8
Q ss_pred EEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHHHHH
Q 014134 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGL 98 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~~~~ 98 (430)
+++.|++|||||..+.-.+...+.+++|++....+-..+.+.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI 44 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERI 44 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHH
Confidence 5789999999997776555556678899877665544444443
No 489
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=90.75 E-value=0.75 Score=40.57 Aligned_cols=81 Identities=20% Similarity=0.171 Sum_probs=49.7
Q ss_pred CCeEEEEcchHHHHHHHHHHHHHcCc-ceeE---eCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh
Q 014134 78 PGIVLVVSPLIALMENQVIGLKEKGI-AGEF---LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153 (430)
Q Consensus 78 ~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~ 153 (430)
.+.+|||+.+---|..+.+.++.+.. ...+ +.-....... ..-+.... +++ .||||+++..+.+.
T Consensus 126 sP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eq---v~~L~~~~--~~i------~vGTP~Rl~kLle~ 194 (252)
T PF14617_consen 126 SPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQ---VKLLKKTR--VHI------AVGTPGRLSKLLEN 194 (252)
T ss_pred CCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHH---HHHHHhCC--ceE------EEeChHHHHHHHHc
Confidence 57899999998888889999888631 1111 1111011111 11111112 222 89999999999764
Q ss_pred --hhcCCccEEEEecCcc
Q 014134 154 --HSRGLLNLVAIDEAHC 169 (430)
Q Consensus 154 --~~~~~~~~lViDE~h~ 169 (430)
.....+.+||+|--|.
T Consensus 195 ~~L~l~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 195 GALSLSNLKRIVLDWSYL 212 (252)
T ss_pred CCCCcccCeEEEEcCCcc
Confidence 4466688999998765
No 490
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=90.45 E-value=0.93 Score=46.52 Aligned_cols=29 Identities=38% Similarity=0.434 Sum_probs=21.8
Q ss_pred HHHHHHHHHHc-------C--------CCEEEEcCCCChHHHHh
Q 014134 42 KQLDAIQAVLS-------G--------RDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 42 ~Q~~~~~~l~~-------~--------~~~lv~a~tGsGKT~~~ 70 (430)
.|.+|+..+.+ | .++++.+|||.|||..+
T Consensus 495 GQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELA 538 (786)
T COG0542 495 GQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELA 538 (786)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHH
Confidence 47778777652 1 36899999999999654
No 491
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=90.44 E-value=1.6 Score=38.04 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=24.1
Q ss_pred cEEEEecCcccc-ccCCCcHHHHHHHHHHHhhCC--CCcEEEEEcCC
Q 014134 160 NLVAIDEAHCIS-SWGHDFRPSYRKLSSLRNYLP--DVPILALTATA 203 (430)
Q Consensus 160 ~~lViDE~h~~~-~~~~~~~~~~~~l~~~~~~~~--~~~~i~~SAT~ 203 (430)
-+||+||+|.+. ... ........+..+..... ....++++++-
T Consensus 120 ~iiviDe~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASE-EDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTT-TTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhccc-chHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 589999999998 211 13444455555555522 22244556654
No 492
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=90.31 E-value=2.2 Score=36.72 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=24.6
Q ss_pred CCCEEEEcCCCChHHHHhHHhh---hcCCCeEEEEcch
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPL 87 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~Pt 87 (430)
|.-+.+.||+|+|||...+..+ ...+.+++|+.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 3457899999999997655333 3456678877654
No 493
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=90.24 E-value=0.39 Score=46.07 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=26.2
Q ss_pred chHHHHHHHHHHHcCCCEEEEcCCCChHHHHhH
Q 014134 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 39 ~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~ 71 (430)
+.......+..+..++++++.+|+|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 344556677777789999999999999997664
No 494
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.20 E-value=0.44 Score=42.78 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=26.6
Q ss_pred HHHhcCCccchHHHHHHHHHHHc-C-CCEEEEcCCCChHHHHh
Q 014134 30 LRWHFGHAQFRDKQLDAIQAVLS-G-RDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 30 l~~~~g~~~~~~~Q~~~~~~l~~-~-~~~lv~a~tGsGKT~~~ 70 (430)
|.. +|+ .+.|.+.+..++. . ..+++.+|||||||...
T Consensus 59 l~~-lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 59 LEK-LGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred HHH-cCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 454 564 5567777776664 3 45889999999999654
No 495
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=90.14 E-value=2.7 Score=44.59 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=13.5
Q ss_pred EEEEcCCCChHHHHh
Q 014134 56 CFCLMPTGGGKSMCY 70 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~ 70 (430)
+++.||||+|||..+
T Consensus 599 ~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 599 FLLVGPSGVGKTETA 613 (852)
T ss_pred EEEECCCCCCHHHHH
Confidence 799999999999765
No 496
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=90.13 E-value=0.29 Score=41.57 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=15.6
Q ss_pred EEEEcCCCChHHHHhHHhhhcCCCeE
Q 014134 56 CFCLMPTGGGKSMCYQIPALAKPGIV 81 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~~~~l~~~~~~ 81 (430)
.++.+|||+|||..++..+-..+..+
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pv 29 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPV 29 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EE
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCE
Confidence 57899999999976654433333333
No 497
>PRK06321 replicative DNA helicase; Provisional
Probab=90.08 E-value=3 Score=40.86 Aligned_cols=40 Identities=15% Similarity=-0.073 Sum_probs=24.6
Q ss_pred CCEEEEcCCCChHHHHhHHhhh----cCCCeEEEEc---chHHHHHH
Q 014134 54 RDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVS---PLIALMEN 93 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~~~l----~~~~~~lil~---Pt~~L~~q 93 (430)
.=+++.|.||.|||..++-.+. ..+..+++++ |..+|+..
T Consensus 227 ~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~R 273 (472)
T PRK06321 227 NLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHR 273 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHH
Confidence 3457889999999975542221 3356677765 44455444
No 498
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=90.07 E-value=0.22 Score=44.82 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=20.0
Q ss_pred HHHHHH-cCCCEEEEcCCCChHHHHhHH
Q 014134 46 AIQAVL-SGRDCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 46 ~~~~l~-~~~~~lv~a~tGsGKT~~~~~ 72 (430)
.+..++ ++++++++||+|+|||....-
T Consensus 25 ll~~l~~~~~pvLl~G~~GtGKT~li~~ 52 (272)
T PF12775_consen 25 LLDLLLSNGRPVLLVGPSGTGKTSLIQN 52 (272)
T ss_dssp HHHHHHHCTEEEEEESSTTSSHHHHHHH
T ss_pred HHHHHHHcCCcEEEECCCCCchhHHHHh
Confidence 344433 567999999999999976543
No 499
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=90.05 E-value=2.4 Score=41.48 Aligned_cols=63 Identities=17% Similarity=0.286 Sum_probs=46.3
Q ss_pred cchHHHHHHHHHHHc------C----CCEEEEcCCCChHHHHhH-Hhh------hcCCCeEEEEcchHHHHHHHHHHHHH
Q 014134 38 QFRDKQLDAIQAVLS------G----RDCFCLMPTGGGKSMCYQ-IPA------LAKPGIVLVVSPLIALMENQVIGLKE 100 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~------~----~~~lv~a~tGsGKT~~~~-~~~------l~~~~~~lil~Pt~~L~~q~~~~~~~ 100 (430)
.+-|||.-++-.+.. + +..++..|-+-|||..+. +.. -..+....|++|+.+-+.+....++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 478999999988872 1 357888999999995443 111 13477899999999988877766655
No 500
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=89.81 E-value=0.6 Score=40.91 Aligned_cols=50 Identities=18% Similarity=0.108 Sum_probs=32.4
Q ss_pred cCCCEEEEcCCCChHHHHhH---HhhhcCCCeEEEEcchHHHHHHHHHHHHHcC
Q 014134 52 SGRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKG 102 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~---~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~ 102 (430)
.|..+++.+++|+|||..+. ...+.++..++++.- .+..+++.+....++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~-e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT-EESRESIIRQAAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc-cCCHHHHHHHHHHhC
Confidence 35678999999999996543 223456777877764 333345555555554
Done!