Query 014134
Match_columns 430
No_of_seqs 213 out of 2523
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 06:05:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014134.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014134hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v1x_A ATP-dependent DNA helic 100.0 7.9E-57 2.7E-61 445.8 38.7 363 13-375 19-384 (591)
2 1oyw_A RECQ helicase, ATP-depe 100.0 1.4E-56 4.9E-61 439.9 38.8 351 15-376 2-354 (523)
3 2db3_A ATP-dependent RNA helic 100.0 4.2E-57 1.4E-61 435.9 34.1 353 14-385 55-428 (434)
4 2i4i_A ATP-dependent RNA helic 100.0 4.2E-54 1.4E-58 414.7 29.8 356 13-386 13-404 (417)
5 2j0s_A ATP-dependent RNA helic 100.0 9.8E-54 3.4E-58 411.1 29.2 349 14-382 36-400 (410)
6 1s2m_A Putative ATP-dependent 100.0 2.6E-52 8.9E-57 399.9 30.2 352 13-383 19-383 (400)
7 1xti_A Probable ATP-dependent 100.0 6.5E-51 2.2E-55 389.1 38.1 348 15-381 8-374 (391)
8 3eiq_A Eukaryotic initiation f 100.0 1.6E-52 5.5E-57 403.3 26.6 353 14-385 39-407 (414)
9 3sqw_A ATP-dependent RNA helic 100.0 1.5E-51 5.1E-56 411.7 32.1 346 21-380 27-413 (579)
10 3fht_A ATP-dependent RNA helic 100.0 7.7E-51 2.6E-55 391.3 34.1 346 13-381 23-396 (412)
11 3pey_A ATP-dependent RNA helic 100.0 7.4E-51 2.5E-55 389.1 33.2 343 14-378 4-370 (395)
12 3i5x_A ATP-dependent RNA helic 100.0 2.8E-51 9.5E-56 409.5 30.9 346 21-380 78-464 (563)
13 1hv8_A Putative ATP-dependent 100.0 9.7E-50 3.3E-54 377.6 36.3 344 14-381 5-361 (367)
14 1fuu_A Yeast initiation factor 100.0 6.3E-52 2.1E-56 396.5 17.5 349 13-382 19-383 (394)
15 2z0m_A 337AA long hypothetical 100.0 5.9E-49 2E-53 367.9 31.9 327 22-377 1-334 (337)
16 3fmp_B ATP-dependent RNA helic 100.0 2.6E-51 8.9E-56 401.6 14.5 344 13-379 90-461 (479)
17 3oiy_A Reverse gyrase helicase 100.0 1.3E-48 4.4E-53 375.7 26.5 332 23-378 7-376 (414)
18 3fho_A ATP-dependent RNA helic 100.0 1.3E-48 4.3E-53 383.7 16.0 347 16-382 120-488 (508)
19 4f92_B U5 small nuclear ribonu 100.0 1.6E-45 5.5E-50 399.4 29.5 397 13-427 899-1370(1724)
20 2va8_A SSO2462, SKI2-type heli 100.0 1.4E-44 4.7E-49 370.2 32.1 326 14-367 7-410 (715)
21 2p6r_A Afuhel308 helicase; pro 100.0 9.3E-45 3.2E-49 370.3 26.9 327 17-368 3-391 (702)
22 2zj8_A DNA helicase, putative 100.0 3.7E-44 1.3E-48 366.9 25.8 326 16-368 2-390 (720)
23 4f92_B U5 small nuclear ribonu 100.0 7.8E-45 2.7E-49 394.0 21.6 375 35-426 76-534 (1724)
24 3l9o_A ATP-dependent RNA helic 100.0 4.9E-44 1.7E-48 375.6 26.7 336 17-377 164-610 (1108)
25 4ddu_A Reverse gyrase; topoiso 100.0 2.3E-43 8E-48 370.4 28.9 331 24-378 65-503 (1104)
26 4a2p_A RIG-I, retinoic acid in 100.0 1.6E-43 5.3E-48 353.5 26.3 320 35-371 4-514 (556)
27 2xgj_A ATP-dependent RNA helic 100.0 1.1E-42 3.7E-47 362.4 32.9 318 31-375 80-510 (1010)
28 2ykg_A Probable ATP-dependent 100.0 1.2E-43 4.1E-48 363.2 20.0 329 28-373 4-524 (696)
29 1gm5_A RECG; helicase, replica 100.0 1.8E-43 6.1E-48 357.4 20.3 314 25-365 356-697 (780)
30 3tbk_A RIG-I helicase domain; 100.0 7.7E-43 2.6E-47 348.4 24.2 319 38-373 4-515 (555)
31 1wp9_A ATP-dependent RNA helic 100.0 8.2E-42 2.8E-46 335.5 30.2 313 38-369 9-479 (494)
32 4a2q_A RIG-I, retinoic acid in 100.0 5.6E-42 1.9E-46 354.0 28.2 321 33-370 243-754 (797)
33 2eyq_A TRCF, transcription-rep 100.0 7.7E-41 2.6E-45 353.5 35.0 322 18-365 584-922 (1151)
34 4a4z_A Antiviral helicase SKI2 100.0 9.1E-41 3.1E-45 348.0 30.6 326 24-377 26-506 (997)
35 1tf5_A Preprotein translocase 100.0 6.1E-40 2.1E-44 325.3 33.4 329 33-380 79-567 (844)
36 4a2w_A RIG-I, retinoic acid in 100.0 7.8E-41 2.7E-45 348.9 28.2 317 34-368 244-752 (936)
37 1gku_B Reverse gyrase, TOP-RG; 100.0 7.1E-42 2.4E-46 359.4 19.4 327 24-379 44-468 (1054)
38 4gl2_A Interferon-induced heli 100.0 1.7E-41 5.6E-46 347.5 18.6 310 38-363 7-516 (699)
39 2fwr_A DNA repair protein RAD2 100.0 6.9E-41 2.3E-45 327.2 17.3 288 38-361 93-448 (472)
40 2whx_A Serine protease/ntpase/ 100.0 2.5E-41 8.4E-46 335.9 12.3 310 20-377 155-493 (618)
41 1yks_A Genome polyprotein [con 100.0 4E-42 1.4E-46 330.6 5.9 273 50-377 5-314 (440)
42 2oca_A DAR protein, ATP-depend 100.0 1.9E-40 6.7E-45 327.2 15.7 300 37-363 112-453 (510)
43 2jlq_A Serine protease subunit 100.0 1.6E-40 5.4E-45 321.0 14.4 283 35-364 1-310 (451)
44 2wv9_A Flavivirin protease NS2 100.0 6.3E-41 2.1E-45 334.9 10.6 297 34-376 206-547 (673)
45 2fsf_A Preprotein translocase 100.0 1.1E-37 3.7E-42 308.4 29.7 316 32-366 69-584 (853)
46 1nkt_A Preprotein translocase 100.0 7.7E-37 2.6E-41 302.6 32.5 331 32-381 106-640 (922)
47 2xau_A PRE-mRNA-splicing facto 100.0 4.7E-38 1.6E-42 320.0 23.3 328 14-367 71-445 (773)
48 3h1t_A Type I site-specific re 100.0 1.5E-37 5E-42 311.6 24.3 289 38-354 178-545 (590)
49 2z83_A Helicase/nucleoside tri 100.0 1.1E-38 3.8E-43 308.4 12.7 272 48-365 16-313 (459)
50 3o8b_A HCV NS3 protease/helica 100.0 2.1E-38 7.1E-43 311.9 12.6 277 39-369 218-518 (666)
51 2v6i_A RNA helicase; membrane, 100.0 7.4E-37 2.5E-41 293.4 19.9 265 52-362 1-288 (431)
52 3dmq_A RNA polymerase-associat 100.0 1.5E-36 5.2E-41 316.9 23.3 314 38-364 153-612 (968)
53 3rc3_A ATP-dependent RNA helic 100.0 2.4E-34 8.2E-39 286.6 28.5 287 50-380 152-459 (677)
54 1z63_A Helicase of the SNF2/RA 100.0 4.3E-35 1.5E-39 288.3 22.7 298 38-361 37-447 (500)
55 3mwy_W Chromo domain-containin 100.0 4.5E-33 1.5E-37 286.8 23.0 327 37-377 235-698 (800)
56 1z3i_X Similar to RAD54-like; 100.0 9.2E-32 3.2E-36 270.4 31.9 314 38-365 55-528 (644)
57 3jux_A Protein translocase sub 100.0 1.6E-30 5.4E-35 252.3 30.2 184 195-382 411-611 (822)
58 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.2E-30 4.1E-35 270.4 23.3 321 20-363 247-707 (1038)
59 1c4o_A DNA nucleotide excision 100.0 9E-29 3.1E-33 248.3 25.7 129 245-374 424-559 (664)
60 3fe2_A Probable ATP-dependent 100.0 2.5E-28 8.5E-33 216.5 20.0 193 12-224 26-236 (242)
61 3ly5_A ATP-dependent RNA helic 100.0 4.3E-29 1.5E-33 223.7 13.5 185 13-215 50-254 (262)
62 1q0u_A Bstdead; DEAD protein, 100.0 6.2E-29 2.1E-33 217.1 14.0 192 15-226 4-212 (219)
63 3iuy_A Probable ATP-dependent 100.0 1.4E-28 4.8E-33 216.3 15.6 185 13-215 17-220 (228)
64 1vec_A ATP-dependent RNA helic 100.0 1.6E-28 5.4E-33 212.5 15.1 183 15-215 3-199 (206)
65 2hjv_A ATP-dependent RNA helic 100.0 7.6E-28 2.6E-32 199.6 18.6 152 228-380 6-157 (163)
66 2d7d_A Uvrabc system protein B 100.0 1.5E-27 5.2E-32 239.3 24.4 128 245-373 430-564 (661)
67 2pl3_A Probable ATP-dependent 100.0 7.8E-28 2.7E-32 212.7 19.6 192 13-225 23-232 (236)
68 2rb4_A ATP-dependent RNA helic 100.0 1E-27 3.5E-32 201.3 18.0 152 230-381 6-163 (175)
69 3bor_A Human initiation factor 100.0 1.9E-28 6.4E-33 216.6 13.6 192 13-223 28-232 (237)
70 3ber_A Probable ATP-dependent 100.0 8.6E-28 3E-32 213.6 17.9 191 13-223 41-245 (249)
71 2oxc_A Probable ATP-dependent 100.0 1.1E-27 3.6E-32 210.8 18.3 192 13-224 22-227 (230)
72 3fmo_B ATP-dependent RNA helic 100.0 2.6E-28 9E-33 222.5 14.4 189 13-224 90-296 (300)
73 1t6n_A Probable ATP-dependent 100.0 5.8E-27 2E-31 204.8 21.5 190 14-222 13-217 (220)
74 1fuk_A Eukaryotic initiation f 100.0 5.6E-28 1.9E-32 200.9 14.3 149 234-382 6-154 (165)
75 1qde_A EIF4A, translation init 100.0 1.1E-27 3.6E-32 210.1 15.8 191 13-224 12-215 (224)
76 2gxq_A Heat resistant RNA depe 100.0 4.4E-27 1.5E-31 203.6 19.0 188 16-223 2-203 (207)
77 2jgn_A DBX, DDX3, ATP-dependen 99.9 3.7E-27 1.3E-31 199.2 16.9 157 229-386 17-174 (185)
78 3eaq_A Heat resistant RNA depe 99.9 2.4E-27 8.1E-32 205.0 16.1 142 240-381 13-154 (212)
79 3dkp_A Probable ATP-dependent 99.9 1.6E-27 5.4E-32 212.0 15.2 193 20-225 34-240 (245)
80 1wrb_A DJVLGB; RNA helicase, D 99.9 2.9E-28 1E-32 217.7 9.3 195 13-224 21-238 (253)
81 1t5i_A C_terminal domain of A 99.9 3.6E-27 1.2E-31 197.0 15.1 140 242-381 15-155 (172)
82 2p6n_A ATP-dependent RNA helic 99.9 6.1E-27 2.1E-31 198.6 15.6 154 230-385 28-182 (191)
83 3i32_A Heat resistant RNA depe 99.9 5.6E-26 1.9E-30 205.4 15.5 140 241-380 11-150 (300)
84 2ipc_A Preprotein translocase 99.9 2.3E-23 7.8E-28 206.1 33.5 124 31-171 73-215 (997)
85 2yjt_D ATP-dependent RNA helic 99.9 1.2E-27 4E-32 199.9 0.0 137 243-379 15-151 (170)
86 2vl7_A XPD; helicase, unknown 99.9 2E-23 6.9E-28 205.5 16.9 75 34-109 4-82 (540)
87 3crv_A XPD/RAD3 related DNA he 99.9 1.8E-19 6.2E-24 178.1 27.2 311 38-365 3-531 (551)
88 3b6e_A Interferon-induced heli 99.8 6.9E-21 2.4E-25 165.6 11.6 155 34-202 29-216 (216)
89 2fz4_A DNA repair protein RAD2 99.8 3.9E-20 1.3E-24 162.5 14.2 139 38-207 93-232 (237)
90 1rif_A DAR protein, DNA helica 99.8 6.3E-20 2.2E-24 166.2 10.6 145 38-207 113-266 (282)
91 1z5z_A Helicase of the SNF2/RA 99.8 5.8E-20 2E-24 164.1 9.4 124 242-365 94-224 (271)
92 3llm_A ATP-dependent RNA helic 99.8 4.9E-19 1.7E-23 155.7 14.4 153 37-207 60-222 (235)
93 4a15_A XPD helicase, ATP-depen 99.8 3E-17 1E-21 163.4 24.1 162 195-364 377-583 (620)
94 1w36_D RECD, exodeoxyribonucle 98.8 3.1E-08 1.1E-12 98.6 12.7 77 24-100 135-218 (608)
95 4b3f_X DNA-binding protein smu 98.2 3.6E-06 1.2E-10 84.6 10.3 68 37-104 188-259 (646)
96 3e1s_A Exodeoxyribonuclease V, 98.2 4.2E-06 1.4E-10 82.4 9.4 61 38-98 189-252 (574)
97 2gk6_A Regulator of nonsense t 98.2 1.9E-05 6.4E-10 79.0 14.0 69 36-104 178-250 (624)
98 3upu_A ATP-dependent DNA helic 98.1 7.9E-06 2.7E-10 78.6 9.1 65 34-98 21-94 (459)
99 2wjy_A Regulator of nonsense t 98.0 3.6E-05 1.2E-09 78.6 11.7 69 36-104 354-426 (800)
100 3lfu_A DNA helicase II; SF1 he 97.9 0.00084 2.9E-08 67.5 21.1 63 37-101 8-77 (647)
101 3hgt_A HDA1 complex subunit 3; 97.7 0.00032 1.1E-08 62.7 11.7 126 244-374 109-246 (328)
102 3vkw_A Replicase large subunit 97.6 0.00014 4.9E-09 68.1 7.8 43 56-100 164-206 (446)
103 2xzl_A ATP-dependent helicase 97.4 0.00023 8E-09 72.8 8.1 69 36-104 358-430 (802)
104 3ec2_A DNA replication protein 97.1 0.004 1.4E-07 51.2 10.8 31 40-70 16-55 (180)
105 2o0j_A Terminase, DNA packagin 97.0 0.0075 2.6E-07 55.8 12.4 63 38-100 163-230 (385)
106 3te6_A Regulatory protein SIR3 96.8 0.014 4.8E-07 52.5 12.2 19 53-71 45-63 (318)
107 2zpa_A Uncharacterized protein 96.7 0.0046 1.6E-07 61.1 9.2 55 38-92 175-231 (671)
108 3h4m_A Proteasome-activating n 96.7 0.0017 6E-08 57.8 5.8 56 13-71 12-69 (285)
109 2qby_B CDC6 homolog 3, cell di 96.6 0.021 7.2E-07 53.1 12.6 18 54-71 46-63 (384)
110 3eie_A Vacuolar protein sortin 96.6 0.0078 2.7E-07 54.7 9.2 52 13-71 13-69 (322)
111 3co5_A Putative two-component 96.5 0.0091 3.1E-07 47.0 7.8 20 51-70 25-44 (143)
112 3cpe_A Terminase, DNA packagin 96.4 0.02 6.8E-07 56.7 11.6 63 38-100 163-230 (592)
113 3vfd_A Spastin; ATPase, microt 96.4 0.0063 2.1E-07 56.9 7.6 32 53-84 148-179 (389)
114 2b8t_A Thymidine kinase; deoxy 96.3 0.0018 6.2E-08 55.1 3.1 36 53-88 12-50 (223)
115 3cf0_A Transitional endoplasmi 96.3 0.024 8.2E-07 50.9 10.7 55 14-71 11-67 (301)
116 1xwi_A SKD1 protein; VPS4B, AA 96.2 0.041 1.4E-06 49.9 11.7 18 54-71 46-63 (322)
117 1l8q_A Chromosomal replication 96.2 0.029 1E-06 50.8 10.8 33 53-85 37-72 (324)
118 4b4t_J 26S protease regulatory 96.2 0.01 3.5E-07 55.0 7.4 57 13-72 143-201 (405)
119 1d2n_A N-ethylmaleimide-sensit 96.2 0.0072 2.4E-07 53.4 6.1 18 54-71 65-82 (272)
120 1g5t_A COB(I)alamin adenosyltr 96.1 0.013 4.4E-07 48.4 6.9 132 53-206 28-165 (196)
121 4b4t_M 26S protease regulatory 96.1 0.0035 1.2E-07 58.9 3.9 57 12-71 175-233 (434)
122 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.0088 3E-07 52.4 6.4 19 53-71 39-57 (262)
123 3b9p_A CG5977-PA, isoform A; A 96.1 0.047 1.6E-06 48.7 11.1 19 53-71 54-72 (297)
124 1pjr_A PCRA; DNA repair, DNA r 96.1 0.0086 3E-07 60.9 6.8 63 37-101 10-79 (724)
125 1uaa_A REP helicase, protein ( 96.0 0.0068 2.3E-07 61.1 6.0 62 38-101 2-70 (673)
126 2kjq_A DNAA-related protein; s 96.0 0.0089 3E-07 47.4 5.2 19 52-70 35-53 (149)
127 1jbk_A CLPB protein; beta barr 96.0 0.18 6E-06 41.2 13.6 17 54-70 44-60 (195)
128 1xx6_A Thymidine kinase; NESG, 96.0 0.0067 2.3E-07 50.3 4.6 36 53-88 8-46 (191)
129 2j9r_A Thymidine kinase; TK1, 95.9 0.012 4.2E-07 49.3 6.1 34 56-89 31-67 (214)
130 3u4q_A ATP-dependent helicase/ 95.9 0.0091 3.1E-07 64.4 6.7 61 38-100 10-79 (1232)
131 2qp9_X Vacuolar protein sortin 95.9 0.024 8.2E-07 52.2 8.6 18 54-71 85-102 (355)
132 1a5t_A Delta prime, HOLB; zinc 95.9 0.039 1.3E-06 50.3 9.7 33 39-71 3-42 (334)
133 4b4t_H 26S protease regulatory 95.9 0.011 3.8E-07 55.6 6.0 55 12-71 203-261 (467)
134 2zan_A Vacuolar protein sortin 95.8 0.033 1.1E-06 52.9 9.4 18 54-71 168-185 (444)
135 2chg_A Replication factor C sm 95.8 0.14 4.7E-06 43.0 12.6 17 54-70 39-55 (226)
136 2v1u_A Cell division control p 95.8 0.045 1.5E-06 50.8 10.1 19 53-71 44-62 (387)
137 3pvs_A Replication-associated 95.8 0.011 3.9E-07 56.1 6.0 19 54-72 51-69 (447)
138 3syl_A Protein CBBX; photosynt 95.7 0.19 6.6E-06 44.9 13.7 17 54-70 68-84 (309)
139 3t15_A Ribulose bisphosphate c 95.7 0.023 7.9E-07 50.7 7.4 18 54-71 37-54 (293)
140 2z4s_A Chromosomal replication 95.7 0.051 1.8E-06 51.5 10.1 17 54-70 131-147 (440)
141 2w58_A DNAI, primosome compone 95.6 0.14 4.7E-06 42.6 11.6 17 54-70 55-71 (202)
142 3bos_A Putative DNA replicatio 95.6 0.031 1.1E-06 47.9 7.7 18 53-70 52-69 (242)
143 2p65_A Hypothetical protein PF 95.6 0.047 1.6E-06 44.6 8.5 18 53-70 43-60 (187)
144 4b4t_L 26S protease subunit RP 95.6 0.012 4.2E-07 55.3 5.3 57 13-72 176-234 (437)
145 1sxj_A Activator 1 95 kDa subu 95.6 0.026 9E-07 54.8 7.8 42 159-204 149-190 (516)
146 1fnn_A CDC6P, cell division co 95.6 0.083 2.8E-06 49.0 11.0 17 55-71 46-62 (389)
147 2r2a_A Uncharacterized protein 95.5 0.0048 1.6E-07 51.6 2.0 18 55-72 7-24 (199)
148 4b4t_I 26S protease regulatory 95.5 0.016 5.5E-07 54.0 5.6 57 12-71 176-234 (437)
149 3u61_B DNA polymerase accessor 95.5 0.022 7.5E-07 51.6 6.5 14 158-171 105-118 (324)
150 3d8b_A Fidgetin-like protein 1 95.5 0.046 1.6E-06 50.3 8.7 32 53-84 117-148 (357)
151 4b4t_K 26S protease regulatory 95.3 0.017 5.8E-07 54.2 5.2 56 13-71 167-224 (428)
152 3hu3_A Transitional endoplasmi 95.3 0.031 1.1E-06 53.7 7.2 20 53-72 238-257 (489)
153 3cf2_A TER ATPase, transitiona 95.3 0.03 1E-06 56.9 7.1 67 13-80 472-538 (806)
154 1gm5_A RECG; helicase, replica 95.3 0.034 1.2E-06 56.6 7.6 79 257-335 416-499 (780)
155 2qby_A CDC6 homolog 1, cell di 95.3 0.069 2.4E-06 49.4 9.3 19 53-71 45-63 (386)
156 2gno_A DNA polymerase III, gam 95.2 0.12 4E-06 46.4 10.2 17 55-71 20-36 (305)
157 4a1f_A DNAB helicase, replicat 95.1 0.084 2.9E-06 47.9 8.9 42 53-94 46-93 (338)
158 3pfi_A Holliday junction ATP-d 94.9 0.08 2.7E-06 48.2 8.5 18 54-71 56-73 (338)
159 2q6t_A DNAB replication FORK h 94.9 0.23 7.9E-06 47.1 11.8 33 54-86 201-237 (444)
160 1njg_A DNA polymerase III subu 94.8 0.78 2.7E-05 38.8 14.3 16 55-70 47-62 (250)
161 2r6a_A DNAB helicase, replicat 94.7 0.14 4.8E-06 48.8 9.8 34 53-86 203-240 (454)
162 3dm5_A SRP54, signal recogniti 94.6 0.56 1.9E-05 44.1 13.4 50 156-209 180-230 (443)
163 2orv_A Thymidine kinase; TP4A 94.6 0.071 2.4E-06 45.2 6.6 36 53-88 19-57 (234)
164 1lv7_A FTSH; alpha/beta domain 94.5 0.059 2E-06 46.9 6.3 19 53-71 45-63 (257)
165 1sxj_D Activator 1 41 kDa subu 94.5 0.26 8.9E-06 44.9 11.0 17 54-70 59-75 (353)
166 2dr3_A UPF0273 protein PH0284; 94.5 0.19 6.6E-06 43.1 9.5 50 52-102 22-74 (247)
167 3e2i_A Thymidine kinase; Zn-bi 94.5 0.073 2.5E-06 44.5 6.4 37 53-89 28-67 (219)
168 3kl4_A SRP54, signal recogniti 94.4 0.43 1.5E-05 44.8 12.2 49 157-209 178-229 (433)
169 1iqp_A RFCS; clamp loader, ext 94.4 0.18 6.2E-06 45.3 9.4 17 55-71 48-64 (327)
170 3cf2_A TER ATPase, transitiona 94.2 0.13 4.4E-06 52.3 8.6 18 54-71 239-256 (806)
171 3oiy_A Reverse gyrase helicase 94.2 0.09 3.1E-06 49.4 7.2 78 257-334 63-147 (414)
172 3bh0_A DNAB-like replicative h 94.1 0.77 2.6E-05 41.2 13.0 48 46-93 57-114 (315)
173 1w5s_A Origin recognition comp 94.1 0.23 7.9E-06 46.4 9.9 18 54-71 51-70 (412)
174 2cvh_A DNA repair and recombin 94.0 0.29 9.8E-06 41.1 9.5 33 53-85 20-52 (220)
175 1sxj_B Activator 1 37 kDa subu 93.9 0.37 1.3E-05 43.2 10.5 16 55-70 44-59 (323)
176 1w4r_A Thymidine kinase; type 93.4 0.16 5.4E-06 41.9 6.3 35 53-87 20-57 (195)
177 2fna_A Conserved hypothetical 93.3 1.4 4.8E-05 39.8 13.5 18 54-71 31-48 (357)
178 1jr3_A DNA polymerase III subu 93.1 1.2 4.2E-05 40.7 12.9 17 55-71 40-56 (373)
179 2w0m_A SSO2452; RECA, SSPF, un 93.0 0.76 2.6E-05 38.8 10.5 34 52-85 22-58 (235)
180 3n70_A Transport activator; si 93.0 0.072 2.5E-06 41.8 3.6 20 52-71 23-42 (145)
181 1vma_A Cell division protein F 93.0 1.8 6.1E-05 38.6 13.1 31 55-85 106-139 (306)
182 2ce7_A Cell division protein F 92.8 0.14 4.9E-06 48.8 6.0 18 54-71 50-67 (476)
183 2vhj_A Ntpase P4, P4; non- hyd 92.8 0.093 3.2E-06 47.0 4.4 21 52-72 122-142 (331)
184 1v5w_A DMC1, meiotic recombina 92.7 0.44 1.5E-05 43.4 8.9 57 46-102 110-181 (343)
185 2qen_A Walker-type ATPase; unk 92.7 1.8 6.3E-05 38.9 13.3 19 53-71 31-49 (350)
186 2eyq_A TRCF, transcription-rep 92.5 0.41 1.4E-05 51.2 9.6 76 257-332 651-731 (1151)
187 1ixz_A ATP-dependent metallopr 92.4 0.44 1.5E-05 41.2 8.2 18 54-71 50-67 (254)
188 1hqc_A RUVB; extended AAA-ATPa 92.2 0.19 6.5E-06 45.3 5.8 18 54-71 39-56 (324)
189 1qvr_A CLPB protein; coiled co 92.2 0.72 2.5E-05 47.7 10.8 18 54-71 192-209 (854)
190 1nlf_A Regulatory protein REPA 91.6 2.3 7.9E-05 37.2 12.1 22 50-71 27-48 (279)
191 3bgw_A DNAB-like replicative h 91.6 2.3 8E-05 40.1 12.7 34 53-86 197-233 (444)
192 4ddu_A Reverse gyrase; topoiso 91.4 0.28 9.7E-06 52.1 6.7 78 257-334 120-204 (1104)
193 2z43_A DNA repair and recombin 91.3 0.3 1E-05 44.1 6.1 57 46-102 95-166 (324)
194 3hws_A ATP-dependent CLP prote 91.0 0.62 2.1E-05 42.7 8.0 20 53-72 51-70 (363)
195 1r6b_X CLPA protein; AAA+, N-t 91.0 0.71 2.4E-05 47.1 9.2 18 53-70 207-224 (758)
196 2px0_A Flagellar biosynthesis 90.9 1.8 6.1E-05 38.4 10.6 33 53-85 105-141 (296)
197 1n0w_A DNA repair protein RAD5 90.9 0.52 1.8E-05 40.2 6.9 34 52-85 23-65 (243)
198 1iy2_A ATP-dependent metallopr 90.9 0.7 2.4E-05 40.5 7.9 18 54-71 74-91 (278)
199 3ber_A Probable ATP-dependent 90.6 1.1 3.9E-05 38.4 8.9 73 257-333 110-193 (249)
200 3hjh_A Transcription-repair-co 90.2 0.45 1.5E-05 45.4 6.4 51 52-102 13-63 (483)
201 2zts_A Putative uncharacterize 90.0 0.081 2.8E-06 45.6 1.0 48 53-101 30-81 (251)
202 1ofh_A ATP-dependent HSL prote 90.0 0.68 2.3E-05 41.1 7.2 19 53-71 50-68 (310)
203 1t6n_A Probable ATP-dependent 89.9 0.64 2.2E-05 39.0 6.6 74 258-334 82-166 (220)
204 2ehv_A Hypothetical protein PH 89.8 0.58 2E-05 40.1 6.4 34 52-85 29-66 (251)
205 1ypw_A Transitional endoplasmi 89.8 0.48 1.7E-05 48.6 6.6 19 53-71 238-256 (806)
206 3nbx_X ATPase RAVA; AAA+ ATPas 89.7 0.4 1.4E-05 46.0 5.6 30 42-71 30-59 (500)
207 3cmu_A Protein RECA, recombina 89.6 0.36 1.2E-05 53.8 5.7 43 46-88 1414-1465(2050)
208 3m6a_A ATP-dependent protease 89.3 0.46 1.6E-05 46.3 5.8 19 53-71 108-126 (543)
209 2dhr_A FTSH; AAA+ protein, hex 89.1 2.6 9.1E-05 40.3 10.8 18 54-71 65-82 (499)
210 1oyw_A RECQ helicase, ATP-depe 89.1 0.7 2.4E-05 44.8 6.9 59 258-316 65-123 (523)
211 2oxc_A Probable ATP-dependent 88.6 0.87 3E-05 38.6 6.5 71 257-332 91-172 (230)
212 2p6n_A ATP-dependent RNA helic 88.3 3.7 0.00013 33.5 9.9 89 63-164 39-128 (191)
213 2v1x_A ATP-dependent DNA helic 88.2 0.77 2.6E-05 45.2 6.5 59 258-316 84-144 (591)
214 2x8a_A Nuclear valosin-contain 88.0 0.35 1.2E-05 42.5 3.7 55 13-71 5-62 (274)
215 3fe2_A Probable ATP-dependent 87.9 1.3 4.4E-05 37.8 7.2 72 257-332 101-182 (242)
216 3lda_A DNA repair protein RAD5 87.9 1.9 6.5E-05 40.0 8.7 33 54-86 179-220 (400)
217 2qgz_A Helicase loader, putati 87.8 0.73 2.5E-05 41.2 5.7 33 53-85 152-188 (308)
218 1q57_A DNA primase/helicase; d 87.8 3.1 0.0001 40.0 10.5 35 52-86 241-279 (503)
219 2l8b_A Protein TRAI, DNA helic 87.5 0.37 1.2E-05 39.0 3.1 54 40-93 36-95 (189)
220 3b85_A Phosphate starvation-in 87.3 0.59 2E-05 39.1 4.5 35 36-70 5-39 (208)
221 2r44_A Uncharacterized protein 87.2 0.71 2.4E-05 41.6 5.3 26 46-71 39-64 (331)
222 2yhs_A FTSY, cell division pro 87.1 6.6 0.00023 37.4 11.9 30 55-84 295-327 (503)
223 2orw_A Thymidine kinase; TMTK, 87.1 0.55 1.9E-05 38.4 4.1 36 53-88 3-41 (184)
224 2bjv_A PSP operon transcriptio 86.3 0.48 1.6E-05 41.2 3.5 20 52-71 28-47 (265)
225 2zr9_A Protein RECA, recombina 85.7 2.3 7.8E-05 38.7 7.9 42 45-86 47-97 (349)
226 2oap_1 GSPE-2, type II secreti 85.6 0.78 2.7E-05 44.2 4.9 32 39-70 245-277 (511)
227 1um8_A ATP-dependent CLP prote 85.6 2.9 9.8E-05 38.4 8.7 19 53-71 72-90 (376)
228 3hr8_A Protein RECA; alpha and 85.5 1.1 3.9E-05 40.7 5.7 42 46-87 48-98 (356)
229 1tue_A Replication protein E1; 85.5 1.2 4E-05 37.0 5.2 43 25-70 29-75 (212)
230 1e9r_A Conjugal transfer prote 85.3 0.72 2.5E-05 43.5 4.5 41 52-92 52-95 (437)
231 1vec_A ATP-dependent RNA helic 83.9 2.6 9E-05 34.6 7.0 72 257-332 70-152 (206)
232 3vaa_A Shikimate kinase, SK; s 83.9 0.51 1.7E-05 39.1 2.4 20 52-71 24-43 (199)
233 3bor_A Human initiation factor 83.9 1.6 5.4E-05 37.1 5.6 74 257-333 97-180 (237)
234 4fcw_A Chaperone protein CLPB; 83.8 0.73 2.5E-05 41.0 3.6 18 54-71 48-65 (311)
235 1u94_A RECA protein, recombina 83.5 1.9 6.5E-05 39.3 6.3 42 45-86 49-99 (356)
236 1ojl_A Transcriptional regulat 83.2 0.67 2.3E-05 41.3 3.1 20 52-71 24-43 (304)
237 2pl3_A Probable ATP-dependent 83.2 1.8 6.1E-05 36.7 5.7 71 257-332 96-177 (236)
238 3io5_A Recombination and repai 83.1 0.97 3.3E-05 40.3 3.9 36 55-90 30-70 (333)
239 1kgd_A CASK, peripheral plasma 83.0 0.6 2E-05 37.9 2.4 20 52-71 4-23 (180)
240 1lvg_A Guanylate kinase, GMP k 82.9 0.6 2.1E-05 38.6 2.5 19 52-70 3-21 (198)
241 3cmw_A Protein RECA, recombina 82.8 4.2 0.00014 44.9 9.5 93 46-172 1418-1523(1706)
242 3a8t_A Adenylate isopentenyltr 82.6 0.86 2.9E-05 41.1 3.5 18 54-71 41-58 (339)
243 3trf_A Shikimate kinase, SK; a 82.6 0.6 2.1E-05 37.9 2.4 19 53-71 5-23 (185)
244 1u0j_A DNA replication protein 82.5 1.2 4.1E-05 38.6 4.2 46 22-71 71-122 (267)
245 1xp8_A RECA protein, recombina 82.4 2.4 8.4E-05 38.7 6.5 43 45-87 60-111 (366)
246 3iuy_A Probable ATP-dependent 82.3 2.4 8E-05 35.7 6.1 72 257-332 93-173 (228)
247 1qhx_A CPT, protein (chloramph 82.3 0.63 2.2E-05 37.5 2.3 19 53-71 3-21 (178)
248 2hjv_A ATP-dependent RNA helic 82.0 4.4 0.00015 32.0 7.3 64 64-128 20-85 (163)
249 2qor_A Guanylate kinase; phosp 82.0 0.54 1.8E-05 39.1 1.8 21 50-70 9-29 (204)
250 2gxq_A Heat resistant RNA depe 81.9 3.1 0.0001 34.2 6.6 74 257-334 71-152 (207)
251 1xti_A Probable ATP-dependent 81.9 3.2 0.00011 38.0 7.4 73 257-332 75-158 (391)
252 3lw7_A Adenylate kinase relate 81.9 0.62 2.1E-05 37.2 2.2 19 55-73 3-21 (179)
253 1p9r_A General secretion pathw 81.8 1.2 4.1E-05 41.7 4.3 30 41-70 153-184 (418)
254 3e70_C DPA, signal recognition 81.8 24 0.00081 31.6 12.8 17 54-70 130-146 (328)
255 2rb4_A ATP-dependent RNA helic 81.8 4.3 0.00015 32.4 7.2 78 57-137 12-91 (175)
256 3exa_A TRNA delta(2)-isopenten 81.4 1 3.5E-05 40.1 3.4 17 55-71 5-21 (322)
257 3uk6_A RUVB-like 2; hexameric 81.2 0.63 2.2E-05 42.6 2.2 18 54-71 71-88 (368)
258 1kag_A SKI, shikimate kinase I 81.2 0.83 2.8E-05 36.5 2.7 19 53-71 4-22 (173)
259 1c9k_A COBU, adenosylcobinamid 81.2 0.86 3E-05 37.0 2.7 33 56-89 2-34 (180)
260 2gza_A Type IV secretion syste 81.1 1 3.4E-05 41.3 3.5 20 51-70 173-192 (361)
261 3tau_A Guanylate kinase, GMP k 80.9 0.76 2.6E-05 38.3 2.4 20 52-71 7-26 (208)
262 3iij_A Coilin-interacting nucl 80.9 0.88 3E-05 36.8 2.7 20 52-71 10-29 (180)
263 1y63_A LMAJ004144AAA protein; 80.8 0.78 2.7E-05 37.3 2.4 20 52-71 9-28 (184)
264 3foz_A TRNA delta(2)-isopenten 80.7 1 3.5E-05 40.0 3.2 17 55-71 12-28 (316)
265 1ls1_A Signal recognition part 80.7 29 0.00098 30.4 13.7 33 53-85 98-133 (295)
266 2qmh_A HPR kinase/phosphorylas 80.5 0.79 2.7E-05 37.8 2.2 18 53-70 34-51 (205)
267 2eyu_A Twitching motility prot 80.3 0.79 2.7E-05 39.8 2.4 20 51-70 23-42 (261)
268 1ex7_A Guanylate kinase; subst 80.2 0.93 3.2E-05 37.1 2.6 17 54-70 2-18 (186)
269 1qde_A EIF4A, translation init 80.1 1.7 5.7E-05 36.5 4.4 72 257-333 81-162 (224)
270 2ze6_A Isopentenyl transferase 79.9 0.78 2.7E-05 39.6 2.2 15 56-70 4-18 (253)
271 3ly5_A ATP-dependent RNA helic 79.9 8.3 0.00028 33.2 8.9 72 257-332 125-207 (262)
272 2jgn_A DBX, DDX3, ATP-dependen 79.7 6 0.0002 32.0 7.5 65 63-128 29-96 (185)
273 2c9o_A RUVB-like 1; hexameric 79.6 0.79 2.7E-05 43.5 2.3 18 54-71 64-81 (456)
274 1fuk_A Eukaryotic initiation f 79.6 5 0.00017 31.6 6.9 53 77-129 29-81 (165)
275 2j37_W Signal recognition part 79.6 30 0.001 33.0 13.2 32 55-86 103-137 (504)
276 1wrb_A DJVLGB; RNA helicase, D 79.5 9 0.00031 32.6 9.0 73 258-334 100-182 (253)
277 1zp6_A Hypothetical protein AT 79.4 0.71 2.4E-05 37.7 1.7 20 52-71 8-27 (191)
278 1t5i_A C_terminal domain of A 79.3 6.1 0.00021 31.5 7.3 71 64-137 16-88 (172)
279 3kb2_A SPBC2 prophage-derived 79.2 0.88 3E-05 36.3 2.2 17 55-71 3-19 (173)
280 2j41_A Guanylate kinase; GMP, 79.1 0.86 2.9E-05 37.7 2.2 20 52-71 5-24 (207)
281 2pt7_A CAG-ALFA; ATPase, prote 79.1 1.2 4.1E-05 40.2 3.2 20 51-70 169-188 (330)
282 1ly1_A Polynucleotide kinase; 79.0 0.9 3.1E-05 36.5 2.2 17 55-71 4-20 (181)
283 1kht_A Adenylate kinase; phosp 78.8 0.95 3.2E-05 36.8 2.3 19 53-71 3-21 (192)
284 3tr0_A Guanylate kinase, GMP k 78.6 0.9 3.1E-05 37.5 2.1 19 52-70 6-24 (205)
285 3cm0_A Adenylate kinase; ATP-b 78.6 0.69 2.3E-05 37.6 1.4 20 52-71 3-22 (186)
286 1sky_E F1-ATPase, F1-ATP synth 78.4 12 0.0004 35.4 9.7 27 45-71 140-169 (473)
287 2r62_A Cell division protease 78.1 0.53 1.8E-05 41.0 0.5 19 53-71 44-62 (268)
288 1g41_A Heat shock protein HSLU 77.9 6.2 0.00021 37.0 7.8 19 53-71 50-68 (444)
289 1q0u_A Bstdead; DEAD protein, 77.9 1.4 4.7E-05 36.9 3.1 72 257-332 71-156 (219)
290 3ney_A 55 kDa erythrocyte memb 77.8 1.1 3.9E-05 36.9 2.4 19 52-70 18-36 (197)
291 1z6g_A Guanylate kinase; struc 77.5 1.3 4.3E-05 37.3 2.7 20 51-70 21-40 (218)
292 3a00_A Guanylate kinase, GMP k 77.3 1.2 4.3E-05 36.2 2.6 17 54-70 2-18 (186)
293 2r8r_A Sensor protein; KDPD, P 77.0 2 6.9E-05 36.2 3.7 28 55-82 8-38 (228)
294 3eaq_A Heat resistant RNA depe 76.8 6.7 0.00023 32.5 7.1 60 76-137 29-88 (212)
295 3crm_A TRNA delta(2)-isopenten 76.7 1.6 5.3E-05 39.2 3.2 17 55-71 7-23 (323)
296 4eun_A Thermoresistant glucoki 76.4 1.3 4.3E-05 36.6 2.4 20 52-71 28-47 (200)
297 4ag6_A VIRB4 ATPase, type IV s 76.4 2.5 8.5E-05 39.1 4.6 38 52-89 34-74 (392)
298 3nwj_A ATSK2; P loop, shikimat 76.3 1.6 5.3E-05 37.7 3.0 20 52-71 47-66 (250)
299 1knq_A Gluconate kinase; ALFA/ 75.9 1.1 3.7E-05 36.0 1.8 19 53-71 8-26 (175)
300 2c95_A Adenylate kinase 1; tra 75.9 1.3 4.4E-05 36.2 2.3 21 51-71 7-27 (196)
301 1g8p_A Magnesium-chelatase 38 75.8 0.81 2.8E-05 41.5 1.1 19 53-71 45-63 (350)
302 3jvv_A Twitching mobility prot 75.7 1.3 4.3E-05 40.5 2.3 19 52-70 122-140 (356)
303 4gp7_A Metallophosphoesterase; 75.7 1.1 3.8E-05 35.9 1.8 21 52-72 8-28 (171)
304 1hv8_A Putative ATP-dependent 75.3 22 0.00074 31.8 10.8 77 77-165 237-313 (367)
305 1s96_A Guanylate kinase, GMP k 75.2 1.4 4.8E-05 37.1 2.4 21 50-70 13-33 (219)
306 3d3q_A TRNA delta(2)-isopenten 75.0 1.4 4.7E-05 39.8 2.4 17 55-71 9-25 (340)
307 2xxa_A Signal recognition part 74.9 54 0.0019 30.5 14.0 31 55-85 102-136 (433)
308 2ewv_A Twitching motility prot 74.7 1.4 4.6E-05 40.6 2.3 19 52-70 135-153 (372)
309 3t61_A Gluconokinase; PSI-biol 74.4 1.4 4.8E-05 36.3 2.2 18 54-71 19-36 (202)
310 1via_A Shikimate kinase; struc 74.3 1.6 5.5E-05 35.0 2.4 17 55-71 6-22 (175)
311 2i4i_A ATP-dependent RNA helic 74.3 16 0.00056 33.5 9.9 76 77-164 275-350 (417)
312 3pxg_A Negative regulator of g 74.2 1.8 6.3E-05 41.1 3.2 19 53-71 201-219 (468)
313 1gvn_B Zeta; postsegregational 74.1 1.3 4.4E-05 39.1 2.0 18 54-71 34-51 (287)
314 2v54_A DTMP kinase, thymidylat 73.9 1.2 4E-05 36.8 1.6 20 52-71 3-22 (204)
315 1zuh_A Shikimate kinase; alpha 73.9 1.5 5.2E-05 34.8 2.2 19 54-72 8-26 (168)
316 2rhm_A Putative kinase; P-loop 73.8 1.5 5E-05 35.8 2.1 19 53-71 5-23 (193)
317 1wp9_A ATP-dependent RNA helic 73.7 7.6 0.00026 36.5 7.5 71 257-332 51-131 (494)
318 3nwn_A Kinesin-like protein KI 73.7 2.5 8.6E-05 38.5 3.8 25 47-71 97-123 (359)
319 1in4_A RUVB, holliday junction 73.5 1.9 6.5E-05 38.9 3.0 18 54-71 52-69 (334)
320 1znw_A Guanylate kinase, GMP k 73.3 1.7 5.9E-05 36.0 2.4 22 49-70 16-37 (207)
321 1bg2_A Kinesin; motor protein, 73.2 2.8 9.6E-05 37.6 3.9 25 47-71 70-96 (325)
322 2l82_A Designed protein OR32; 73.2 12 0.00039 26.8 6.2 52 261-312 5-56 (162)
323 2bdt_A BH3686; alpha-beta prot 73.0 1.6 5.6E-05 35.4 2.2 18 55-72 4-21 (189)
324 3uie_A Adenylyl-sulfate kinase 72.9 1.5 5E-05 36.2 1.9 19 52-70 24-42 (200)
325 3eph_A TRNA isopentenyltransfe 72.8 1.5 5.3E-05 40.4 2.2 16 56-71 5-20 (409)
326 1tev_A UMP-CMP kinase; ploop, 72.8 1.4 4.9E-05 35.8 1.8 19 53-71 3-21 (196)
327 2iyv_A Shikimate kinase, SK; t 72.6 2 6.8E-05 34.7 2.7 18 54-71 3-20 (184)
328 3fb4_A Adenylate kinase; psych 72.5 1.7 5.8E-05 36.2 2.2 18 55-72 2-19 (216)
329 2bwj_A Adenylate kinase 5; pho 72.4 1.8 6E-05 35.4 2.3 20 52-71 11-30 (199)
330 1gku_B Reverse gyrase, TOP-RG; 72.3 4 0.00014 43.2 5.5 74 257-332 98-181 (1054)
331 3cmw_A Protein RECA, recombina 72.3 9.3 0.00032 42.3 8.3 34 53-86 732-768 (1706)
332 2plr_A DTMP kinase, probable t 72.2 1.4 4.8E-05 36.5 1.7 20 52-71 3-22 (213)
333 3eme_A Rhodanese-like domain p 72.0 2.7 9.3E-05 30.2 3.0 37 257-293 55-91 (103)
334 3dc4_A Kinesin-like protein NO 71.9 2.8 9.5E-05 37.9 3.6 23 48-70 88-112 (344)
335 1w36_B RECB, exodeoxyribonucle 71.7 5.5 0.00019 42.8 6.4 47 54-100 17-78 (1180)
336 3tlx_A Adenylate kinase 2; str 71.6 2.1 7.1E-05 36.6 2.6 19 53-71 29-47 (243)
337 3gk5_A Uncharacterized rhodane 71.6 2.6 8.9E-05 30.7 2.8 38 257-294 54-91 (108)
338 2i1q_A DNA repair and recombin 71.5 2.8 9.7E-05 37.5 3.6 26 46-71 86-116 (322)
339 3dl0_A Adenylate kinase; phosp 71.5 1.8 6.2E-05 36.0 2.2 18 55-72 2-19 (216)
340 1nks_A Adenylate kinase; therm 71.5 1.7 5.9E-05 35.2 2.0 17 55-71 3-19 (194)
341 1sxj_C Activator 1 40 kDa subu 71.4 3.8 0.00013 37.0 4.5 17 55-71 48-64 (340)
342 1e6c_A Shikimate kinase; phosp 71.3 2.1 7.1E-05 34.1 2.5 18 54-71 3-20 (173)
343 2vvg_A Kinesin-2; motor protei 71.0 3.3 0.00011 37.5 3.9 23 49-71 84-108 (350)
344 3b6u_A Kinesin-like protein KI 71.0 3.2 0.00011 38.0 3.8 24 48-71 95-120 (372)
345 3f9v_A Minichromosome maintena 71.0 1.7 6E-05 42.7 2.2 16 55-70 329-344 (595)
346 2y65_A Kinesin, kinesin heavy 71.0 3.3 0.00011 37.8 3.9 23 49-71 79-103 (365)
347 3foj_A Uncharacterized protein 71.0 2.8 9.4E-05 30.0 2.8 37 257-293 55-91 (100)
348 1zd8_A GTP:AMP phosphotransfer 70.9 1.9 6.5E-05 36.3 2.2 19 53-71 7-25 (227)
349 2p5t_B PEZT; postsegregational 70.9 23 0.0008 30.1 9.3 18 54-71 33-50 (253)
350 1aky_A Adenylate kinase; ATP:A 70.8 2.1 7.1E-05 35.8 2.4 19 53-71 4-22 (220)
351 1zak_A Adenylate kinase; ATP:A 70.8 2.2 7.4E-05 35.8 2.6 19 53-71 5-23 (222)
352 4a14_A Kinesin, kinesin-like p 70.7 3.4 0.00012 37.4 3.9 23 48-70 77-101 (344)
353 2h58_A Kinesin-like protein KI 70.7 3.4 0.00012 37.1 3.9 26 46-71 72-99 (330)
354 3iwh_A Rhodanese-like domain p 70.6 3.1 0.00011 30.1 3.0 36 257-292 55-90 (103)
355 1goj_A Kinesin, kinesin heavy 70.5 3.2 0.00011 37.7 3.7 23 49-71 75-99 (355)
356 4akg_A Glutathione S-transfera 70.3 5.1 0.00018 46.5 6.0 48 22-71 890-941 (2695)
357 1qf9_A UMP/CMP kinase, protein 70.3 2 6.7E-05 34.9 2.1 17 55-71 8-24 (194)
358 2ffh_A Protein (FFH); SRP54, s 70.3 69 0.0024 29.7 14.4 31 55-85 100-133 (425)
359 1t5c_A CENP-E protein, centrom 70.3 3.4 0.00012 37.5 3.8 25 47-71 70-96 (349)
360 2cdn_A Adenylate kinase; phosp 70.1 2.2 7.6E-05 35.0 2.4 18 54-71 21-38 (201)
361 3fmo_B ATP-dependent RNA helic 70.0 2.9 0.0001 37.0 3.3 70 257-333 161-242 (300)
362 2nr8_A Kinesin-like protein KI 69.9 3.5 0.00012 37.5 3.8 25 47-71 96-122 (358)
363 2zfi_A Kinesin-like protein KI 69.8 3.6 0.00012 37.6 3.9 25 47-71 82-108 (366)
364 3pey_A ATP-dependent RNA helic 69.7 13 0.00045 33.7 8.0 80 78-169 243-322 (395)
365 3lre_A Kinesin-like protein KI 69.6 3.4 0.00012 37.5 3.7 24 48-71 99-124 (355)
366 3gbj_A KIF13B protein; kinesin 69.5 3.6 0.00012 37.4 3.8 25 47-71 85-111 (354)
367 3lnc_A Guanylate kinase, GMP k 69.1 1.6 5.5E-05 36.9 1.4 19 52-70 26-44 (231)
368 1v8k_A Kinesin-like protein KI 69.1 3.6 0.00012 38.1 3.8 25 47-71 147-173 (410)
369 2d7d_A Uvrabc system protein B 69.1 34 0.0012 34.0 11.2 83 76-170 443-525 (661)
370 2pez_A Bifunctional 3'-phospho 69.0 2 6.9E-05 34.5 1.9 19 52-70 4-22 (179)
371 4etp_A Kinesin-like protein KA 69.0 4.2 0.00014 37.7 4.2 26 46-71 132-159 (403)
372 1ukz_A Uridylate kinase; trans 68.8 2.3 7.8E-05 35.0 2.2 16 55-70 17-32 (203)
373 1cke_A CK, MSSA, protein (cyti 68.7 2.3 7.7E-05 35.7 2.2 18 54-71 6-23 (227)
374 3c8u_A Fructokinase; YP_612366 68.7 1.9 6.4E-05 35.8 1.7 18 53-70 22-39 (208)
375 1jjv_A Dephospho-COA kinase; P 68.6 2.3 7.9E-05 35.1 2.2 16 56-71 5-20 (206)
376 1m7g_A Adenylylsulfate kinase; 68.6 2.5 8.4E-05 35.1 2.4 31 40-71 13-43 (211)
377 3k1j_A LON protease, ATP-depen 68.6 3.7 0.00013 40.5 4.0 23 49-71 56-78 (604)
378 1x88_A Kinesin-like protein KI 68.4 3.5 0.00012 37.6 3.5 25 47-71 81-107 (359)
379 4a2p_A RIG-I, retinoic acid in 68.4 5.9 0.0002 38.2 5.5 72 258-333 55-137 (556)
380 2wwf_A Thymidilate kinase, put 68.3 2.4 8.2E-05 35.1 2.3 20 52-71 9-28 (212)
381 3pxi_A Negative regulator of g 68.3 3.2 0.00011 42.2 3.6 19 53-71 201-219 (758)
382 2pt5_A Shikimate kinase, SK; a 68.2 2.4 8.2E-05 33.5 2.2 17 55-71 2-18 (168)
383 1nn5_A Similar to deoxythymidy 68.1 2.2 7.7E-05 35.3 2.1 20 52-71 8-27 (215)
384 2chq_A Replication factor C sm 68.1 3.1 0.00011 36.8 3.2 16 55-70 40-55 (319)
385 2wbe_C Bipolar kinesin KRP-130 68.1 3.7 0.00013 37.6 3.6 23 49-71 95-119 (373)
386 2yvu_A Probable adenylyl-sulfa 67.9 2.2 7.5E-05 34.5 1.9 19 53-71 13-31 (186)
387 2vli_A Antibiotic resistance p 67.9 2 6.8E-05 34.6 1.6 20 53-72 5-24 (183)
388 2heh_A KIF2C protein; kinesin, 67.9 3.8 0.00013 37.6 3.6 25 47-71 127-153 (387)
389 3a4m_A L-seryl-tRNA(SEC) kinas 67.7 2.4 8.3E-05 36.6 2.2 18 54-71 5-22 (260)
390 3cob_A Kinesin heavy chain-lik 67.4 3.3 0.00011 37.8 3.1 26 46-71 71-98 (369)
391 1ye8_A Protein THEP1, hypothet 67.4 3.1 0.00011 33.6 2.7 16 55-70 2-17 (178)
392 3u06_A Protein claret segregat 67.4 3.8 0.00013 38.0 3.6 26 46-71 130-157 (412)
393 1f2t_A RAD50 ABC-ATPase; DNA d 67.2 2.7 9.2E-05 32.8 2.2 16 55-70 25-40 (149)
394 2jaq_A Deoxyguanosine kinase; 67.2 2.5 8.6E-05 34.6 2.2 17 55-71 2-18 (205)
395 3tbk_A RIG-I helicase domain; 67.2 4.9 0.00017 38.8 4.6 71 258-332 52-133 (555)
396 3sr0_A Adenylate kinase; phosp 67.1 2.6 9E-05 35.0 2.2 17 55-71 2-18 (206)
397 2if2_A Dephospho-COA kinase; a 67.1 2.5 8.4E-05 34.8 2.1 17 55-71 3-19 (204)
398 1ak2_A Adenylate kinase isoenz 67.1 2.7 9.4E-05 35.5 2.4 19 53-71 16-34 (233)
399 4a2q_A RIG-I, retinoic acid in 67.0 8.3 0.00028 39.4 6.4 71 258-332 296-377 (797)
400 3asz_A Uridine kinase; cytidin 67.0 2.2 7.6E-05 35.3 1.8 18 53-70 6-23 (211)
401 3be4_A Adenylate kinase; malar 66.8 2.7 9.1E-05 35.1 2.3 19 53-71 5-23 (217)
402 2pbr_A DTMP kinase, thymidylat 66.7 2.6 9.1E-05 34.1 2.2 16 56-71 3-18 (195)
403 3dkp_A Probable ATP-dependent 66.6 2.1 7.1E-05 36.5 1.5 74 257-333 97-182 (245)
404 1e4v_A Adenylate kinase; trans 66.2 2.6 9E-05 35.0 2.1 17 55-71 2-18 (214)
405 2z0h_A DTMP kinase, thymidylat 66.0 2.8 9.7E-05 34.1 2.2 16 56-71 3-18 (197)
406 2qt1_A Nicotinamide riboside k 65.9 2.7 9.2E-05 34.7 2.1 19 53-71 21-39 (207)
407 4akg_A Glutathione S-transfera 65.8 2.7 9.1E-05 48.8 2.6 20 51-70 1265-1284(2695)
408 2ius_A DNA translocase FTSK; n 65.6 3.5 0.00012 39.5 3.0 19 52-70 166-184 (512)
409 2owm_A Nckin3-434, related to 65.4 4.9 0.00017 37.7 3.9 23 49-71 131-155 (443)
410 2i3b_A HCR-ntpase, human cance 65.3 4.2 0.00014 33.2 3.1 42 157-203 104-145 (189)
411 3bfn_A Kinesin-like protein KI 65.1 3.6 0.00012 37.8 2.9 33 39-71 75-117 (388)
412 1sxj_E Activator 1 40 kDa subu 65.1 3.3 0.00011 37.4 2.7 18 54-71 37-54 (354)
413 3t0q_A AGR253WP; kinesin, alph 65.0 3.8 0.00013 37.1 3.0 26 46-71 77-104 (349)
414 3umf_A Adenylate kinase; rossm 64.7 3 0.0001 34.9 2.2 18 54-71 30-47 (217)
415 3tb6_A Arabinose metabolism tr 64.5 67 0.0023 27.4 13.1 39 246-284 187-226 (298)
416 2xb4_A Adenylate kinase; ATP-b 64.5 3 0.0001 35.0 2.2 17 55-71 2-18 (223)
417 3kta_A Chromosome segregation 64.3 3 0.0001 33.5 2.1 16 55-70 28-43 (182)
418 1wv9_A Rhodanese homolog TT165 64.2 4 0.00014 28.7 2.5 35 259-293 54-88 (94)
419 1f9v_A Kinesin-like protein KA 64.1 3.8 0.00013 37.1 2.8 22 50-71 80-103 (347)
420 4a74_A DNA repair and recombin 64.0 3.2 0.00011 34.7 2.2 20 52-71 24-43 (231)
421 4e22_A Cytidylate kinase; P-lo 63.9 3.3 0.00011 35.5 2.4 19 53-71 27-45 (252)
422 2bbw_A Adenylate kinase 4, AK4 63.9 3.4 0.00012 35.2 2.4 19 53-71 27-45 (246)
423 3i32_A Heat resistant RNA depe 63.8 15 0.0005 32.5 6.5 59 77-137 27-85 (300)
424 2fsf_A Preprotein translocase 63.7 18 0.0006 36.8 7.7 56 256-317 113-172 (853)
425 2v9p_A Replication protein E1; 63.6 4 0.00014 36.2 2.8 33 52-85 125-158 (305)
426 3tif_A Uncharacterized ABC tra 63.4 3.6 0.00012 35.0 2.4 19 52-70 30-48 (235)
427 1uf9_A TT1252 protein; P-loop, 63.2 3.2 0.00011 34.0 2.0 18 55-72 10-27 (203)
428 2grj_A Dephospho-COA kinase; T 62.8 3.6 0.00012 33.7 2.2 39 55-96 14-52 (192)
429 1tf5_A Preprotein translocase 62.7 21 0.00072 36.3 8.1 71 256-332 122-209 (844)
430 3qf7_A RAD50; ABC-ATPase, ATPa 62.6 3.3 0.00011 37.9 2.2 16 55-70 25-40 (365)
431 1ry6_A Internal kinesin; kines 62.5 5.5 0.00019 36.2 3.6 20 52-71 82-103 (360)
432 1fuu_A Yeast initiation factor 62.5 13 0.00043 33.9 6.2 72 257-333 88-169 (394)
433 3g5j_A Putative ATP/GTP bindin 61.9 6.8 0.00023 29.4 3.6 37 259-295 90-127 (134)
434 2f1r_A Molybdopterin-guanine d 61.5 3.1 0.00011 33.4 1.6 16 55-70 4-19 (171)
435 3tqf_A HPR(Ser) kinase; transf 61.3 4.1 0.00014 32.7 2.2 20 52-71 15-34 (181)
436 2jtq_A Phage shock protein E; 61.2 15 0.0005 25.0 5.0 36 257-293 40-76 (85)
437 3pxi_A Negative regulator of g 61.0 5.7 0.0002 40.3 3.8 17 55-71 523-539 (758)
438 2rep_A Kinesin-like protein KI 60.9 5 0.00017 36.8 3.0 22 50-71 111-134 (376)
439 1cr0_A DNA primase/helicase; R 60.9 4.6 0.00016 35.5 2.8 34 52-85 34-71 (296)
440 1vht_A Dephospho-COA kinase; s 60.9 3.9 0.00013 34.0 2.2 18 54-71 5-22 (218)
441 1rz3_A Hypothetical protein rb 60.7 3.8 0.00013 33.7 2.1 17 54-70 23-39 (201)
442 1c4o_A DNA nucleotide excision 60.7 54 0.0018 32.6 10.7 83 76-170 437-519 (664)
443 3vkg_A Dynein heavy chain, cyt 60.7 11 0.00037 44.5 6.3 48 22-71 873-924 (3245)
444 3hix_A ALR3790 protein; rhodan 60.7 5 0.00017 29.0 2.5 38 257-294 51-89 (106)
445 2fsx_A RV0390, COG0607: rhodan 60.1 9.4 0.00032 29.5 4.2 37 257-293 79-116 (148)
446 3flh_A Uncharacterized protein 59.9 4.9 0.00017 30.0 2.4 38 257-294 70-109 (124)
447 1ltq_A Polynucleotide kinase; 59.9 4 0.00014 36.0 2.2 17 55-71 4-20 (301)
448 2cbz_A Multidrug resistance-as 59.9 4.5 0.00015 34.4 2.4 19 52-70 30-48 (237)
449 3vkg_A Dynein heavy chain, cyt 59.8 8.1 0.00028 45.6 5.0 25 46-70 1296-1321(3245)
450 1odf_A YGR205W, hypothetical 3 59.6 4.2 0.00014 35.8 2.2 16 55-70 33-48 (290)
451 3fht_A ATP-dependent RNA helic 59.4 22 0.00074 32.5 7.3 53 78-130 266-318 (412)
452 1uj2_A Uridine-cytidine kinase 59.3 4.3 0.00015 34.8 2.2 17 55-71 24-40 (252)
453 3auy_A DNA double-strand break 59.3 3.9 0.00013 37.5 2.1 16 55-70 27-42 (371)
454 1sgw_A Putative ABC transporte 59.1 5.3 0.00018 33.3 2.7 19 52-70 34-52 (214)
455 1rj9_A FTSY, signal recognitio 58.8 5.4 0.00019 35.4 2.8 33 53-85 102-137 (304)
456 1zu4_A FTSY; GTPase, signal re 58.8 7.1 0.00024 34.9 3.6 30 55-84 107-139 (320)
457 1pzn_A RAD51, DNA repair and r 58.7 6.9 0.00024 35.5 3.6 18 54-71 132-149 (349)
458 1nkt_A Preprotein translocase 58.6 29 0.001 35.5 8.2 56 255-316 149-208 (922)
459 3egc_A Putative ribose operon 58.4 87 0.003 26.7 12.8 180 89-284 25-211 (291)
460 3u4q_B ATP-dependent helicase/ 57.9 7.1 0.00024 41.9 4.1 33 258-290 342-375 (1166)
461 3bs4_A Uncharacterized protein 57.7 8.1 0.00028 33.3 3.6 58 47-105 10-75 (260)
462 2f6r_A COA synthase, bifunctio 57.6 4.4 0.00015 35.4 2.0 18 55-72 77-94 (281)
463 2pze_A Cystic fibrosis transme 57.5 5.2 0.00018 33.8 2.4 19 52-70 33-51 (229)
464 1htw_A HI0065; nucleotide-bind 57.5 4.6 0.00016 31.8 1.9 19 52-70 32-50 (158)
465 2ff7_A Alpha-hemolysin translo 57.4 5.2 0.00018 34.2 2.4 19 52-70 34-52 (247)
466 1qvr_A CLPB protein; coiled co 57.3 4.4 0.00015 41.8 2.3 17 55-71 590-606 (854)
467 2ipc_A Preprotein translocase 57.3 27 0.00091 35.9 7.6 58 254-317 116-177 (997)
468 1r6b_X CLPA protein; AAA+, N-t 57.1 4.2 0.00014 41.3 2.1 17 55-71 490-506 (758)
469 1qxn_A SUD, sulfide dehydrogen 57.1 7.5 0.00026 29.6 3.1 38 257-294 81-119 (137)
470 3nhv_A BH2092 protein; alpha-b 57.0 6.6 0.00023 30.3 2.8 38 257-294 71-110 (144)
471 1s2m_A Putative ATP-dependent 56.9 25 0.00084 32.1 7.2 58 78-137 258-315 (400)
472 3gfo_A Cobalt import ATP-bindi 56.9 5.2 0.00018 34.9 2.3 19 52-70 33-51 (275)
473 3r20_A Cytidylate kinase; stru 56.9 5.1 0.00017 33.9 2.2 19 53-71 9-27 (233)
474 3ake_A Cytidylate kinase; CMP 56.8 5.1 0.00018 32.8 2.2 17 55-71 4-20 (208)
475 3nh6_A ATP-binding cassette SU 56.8 5.4 0.00018 35.4 2.4 19 52-70 79-97 (306)
476 2jeo_A Uridine-cytidine kinase 56.7 5.1 0.00017 34.1 2.2 19 53-71 25-43 (245)
477 1xjc_A MOBB protein homolog; s 56.7 6.5 0.00022 31.4 2.7 16 55-70 6-21 (169)
478 3b9q_A Chloroplast SRP recepto 56.7 5.3 0.00018 35.4 2.4 32 54-85 101-135 (302)
479 2ghi_A Transport protein; mult 56.6 5.5 0.00019 34.4 2.4 19 52-70 45-63 (260)
480 3l9o_A ATP-dependent RNA helic 56.2 9.5 0.00032 40.6 4.6 65 257-332 226-296 (1108)
481 3qks_A DNA double-strand break 56.2 5.3 0.00018 32.9 2.2 16 55-70 25-40 (203)
482 1nij_A Hypothetical protein YJ 56.1 8.5 0.00029 34.3 3.7 16 56-71 7-22 (318)
483 2pcj_A ABC transporter, lipopr 55.9 5.4 0.00018 33.5 2.2 19 52-70 29-47 (224)
484 1gtv_A TMK, thymidylate kinase 55.9 2.8 9.5E-05 34.7 0.4 15 56-70 3-17 (214)
485 4g1u_C Hemin import ATP-bindin 55.8 5.6 0.00019 34.5 2.4 19 52-70 36-54 (266)
486 2ykg_A Probable ATP-dependent 55.4 10 0.00035 37.9 4.6 72 259-334 62-144 (696)
487 3tqc_A Pantothenate kinase; bi 55.4 9.3 0.00032 34.1 3.8 15 56-70 95-109 (321)
488 1g6h_A High-affinity branched- 55.4 5.9 0.0002 34.1 2.4 19 52-70 32-50 (257)
489 3b6e_A Interferon-induced heli 55.3 7.9 0.00027 31.8 3.2 56 257-316 81-140 (216)
490 1ji0_A ABC transporter; ATP bi 55.1 6 0.00021 33.6 2.4 19 52-70 31-49 (240)
491 1gmx_A GLPE protein; transfera 55.0 7.1 0.00024 28.2 2.5 39 257-295 57-96 (108)
492 2k0z_A Uncharacterized protein 54.9 11 0.00039 27.2 3.7 38 256-293 54-91 (110)
493 1q3t_A Cytidylate kinase; nucl 54.5 6.3 0.00021 33.3 2.4 20 52-71 15-34 (236)
494 1np6_A Molybdopterin-guanine d 54.5 6 0.00021 31.7 2.2 16 55-70 8-23 (174)
495 1svm_A Large T antigen; AAA+ f 54.4 7.2 0.00025 35.8 2.9 19 52-70 168-186 (377)
496 1b0u_A Histidine permease; ABC 54.3 6.2 0.00021 34.1 2.4 19 52-70 31-49 (262)
497 3ipz_A Monothiol glutaredoxin- 54.2 53 0.0018 23.5 7.2 46 258-303 17-68 (109)
498 1mv5_A LMRA, multidrug resista 54.1 5.3 0.00018 34.1 1.9 19 52-70 27-45 (243)
499 2iut_A DNA translocase FTSK; n 54.0 7.3 0.00025 37.8 3.0 18 53-70 214-231 (574)
500 1tq1_A AT5G66040, senescence-a 53.4 7 0.00024 29.4 2.3 38 257-294 81-119 (129)
No 1
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=7.9e-57 Score=445.83 Aligned_cols=363 Identities=39% Similarity=0.724 Sum_probs=315.3
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHH
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALME 92 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~ 92 (430)
....+..+++++.+...|++.|||..|+|+|.++++.+++|+|+++.+|||+|||++|.+|++....++||++|+++|+.
T Consensus 19 ~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~ 98 (591)
T 2v1x_A 19 AAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLME 98 (591)
T ss_dssp GGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHH
T ss_pred hccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHHH
Confidence 44555679999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChh-HHHHHHHhhhcCCccEEEEecCcccc
Q 014134 93 NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCIS 171 (430)
Q Consensus 93 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~-~~~~~~~~~~~~~~~~lViDE~h~~~ 171 (430)
|+++.+..+|.......+.............+.......++++.+|+.+.++. ++..+........++++|+||||.+.
T Consensus 99 q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is 178 (591)
T 2v1x_A 99 DQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCS 178 (591)
T ss_dssp HHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGS
T ss_pred HHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECccccc
Confidence 99999999999888888877766655555555434445666444444433322 22223344456779999999999999
Q ss_pred ccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCc-chhHHHHHH
Q 014134 172 SWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL-LDDAYADLC 250 (430)
Q Consensus 172 ~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ 250 (430)
+||++|++.+..+..+...+|+.++++||||+++.+...+...+....+..+...+.++++.+.+..... ...++..+.
T Consensus 179 ~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~ 258 (591)
T 2v1x_A 179 QWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIV 258 (591)
T ss_dssp TTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHH
Confidence 9999999988888788888899999999999999999999999998888888888999999888776543 345677788
Q ss_pred HHHHh-cCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceE
Q 014134 251 SVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329 (430)
Q Consensus 251 ~~l~~-~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~ 329 (430)
+++.. ..++++||||++++.++.+++.|.+.|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 259 ~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~ 338 (591)
T 2v1x_A 259 KLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRF 338 (591)
T ss_dssp HHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEE
T ss_pred HHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccE
Confidence 88764 36789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHH
Q 014134 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (430)
Q Consensus 330 vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~ 375 (430)
||++++|.|.+.|+||+||+||.|..|.|++++.+.|...+..++.
T Consensus 339 VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~~ 384 (591)
T 2v1x_A 339 VIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVV 384 (591)
T ss_dssp EEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHTT
T ss_pred EEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998887777764
No 2
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.4e-56 Score=439.90 Aligned_cols=351 Identities=43% Similarity=0.732 Sum_probs=312.0
Q ss_pred ccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHH
Q 014134 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQ 94 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~ 94 (430)
..|+.+++++.+.+.|++.|||.+|+|+|.++++.+++|+++++.+|||+|||++|.+|++.....+||++|+++|+.|+
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~ 81 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQ 81 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHH
Confidence 46889999999999999989999999999999999999999999999999999999999998889999999999999999
Q ss_pred HHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHH--HHHhhhcCCccEEEEecCccccc
Q 014134 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK--LKKIHSRGLLNLVAIDEAHCISS 172 (430)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~--~~~~~~~~~~~~lViDE~h~~~~ 172 (430)
.+.+..+|.......+.................. .++ +++||+++.. .........+++||+||||.+.+
T Consensus 82 ~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~--~~i------lv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~ 153 (523)
T 1oyw_A 82 VDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRL------LYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQ 153 (523)
T ss_dssp HHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTC--CSE------EEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCT
T ss_pred HHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--CCE------EEECHHHHhChHHHHHHhhCCCCEEEEeCccccCc
Confidence 9999999998888877766555544444444443 344 6667765532 12333346789999999999999
Q ss_pred cCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCcchhHHHHHHHH
Q 014134 173 WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSV 252 (430)
Q Consensus 173 ~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (430)
||++|++.+..+..+...+|+.+++++|||+++....++...+...++..+.....++++.+.+... ..+...+.++
T Consensus 154 ~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~---~~~~~~l~~~ 230 (523)
T 1oyw_A 154 WGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEK---FKPLDQLMRY 230 (523)
T ss_dssp TSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEEC---SSHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeC---CCHHHHHHHH
Confidence 9999999999998899999999999999999999988899999888888888888888888777654 3566778888
Q ss_pred HHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEE
Q 014134 253 LKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332 (430)
Q Consensus 253 l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~ 332 (430)
+....++++||||+|++.++.+++.|++.|+.+..+||++++++|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 231 l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~ 310 (523)
T 1oyw_A 231 VQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVH 310 (523)
T ss_dssp HHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE
T ss_pred HHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEE
Confidence 88777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHh
Q 014134 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (430)
Q Consensus 333 ~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~ 376 (430)
+++|.|++.|+||+||+||.|..|.|++++++.|...++.+++.
T Consensus 311 ~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 311 FDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp SSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHT
T ss_pred ECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999888888776
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=4.2e-57 Score=435.86 Aligned_cols=353 Identities=19% Similarity=0.255 Sum_probs=279.3
Q ss_pred cccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC-----------CCeEE
Q 014134 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVL 82 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~-----------~~~~l 82 (430)
...|+.+++++.+.+.|.+ +||.+|+|+|.+++|.+++|+|++++||||||||++|++|++.. ++++|
T Consensus 55 ~~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~l 133 (434)
T 2db3_A 55 IQHFTSADLRDIIIDNVNK-SGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVV 133 (434)
T ss_dssp CCCGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEE
T ss_pred cCChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEE
Confidence 4568889999999999998 89999999999999999999999999999999999999998732 56899
Q ss_pred EEcchHHHHHHHHHHHHHcCc----ceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh--hc
Q 014134 83 VVSPLIALMENQVIGLKEKGI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SR 156 (430)
Q Consensus 83 il~Pt~~L~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~--~~ 156 (430)
|++||++|+.|+++++++++. ......++........ .+ ... .+ ++|+||+++.++.... .+
T Consensus 134 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l-~~~--~~------Ivv~Tp~~l~~~l~~~~~~l 201 (434)
T 2db3_A 134 IVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNE---CI-TRG--CH------VVIATPGRLLDFVDRTFITF 201 (434)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHH---HH-TTC--CS------EEEECHHHHHHHHHTTSCCC
T ss_pred EEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHH---Hh-hcC--CC------EEEEChHHHHHHHHhCCccc
Confidence 999999999999999998643 3333333333222111 11 111 22 2999999988876543 46
Q ss_pred CCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccC---CCCceE
Q 014134 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNLF 233 (430)
Q Consensus 157 ~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 233 (430)
..++++|+||||++.++| |...+..+.......++.|+++||||+++.+......++ .++..+.... ....+.
T Consensus 202 ~~~~~lVlDEah~~~~~g--f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l--~~~~~i~~~~~~~~~~~i~ 277 (434)
T 2db3_A 202 EDTRFVVLDEADRMLDMG--FSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFL--KNYVFVAIGIVGGACSDVK 277 (434)
T ss_dssp TTCCEEEEETHHHHTSTT--THHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTC--SSCEEEEESSTTCCCTTEE
T ss_pred ccCCeEEEccHhhhhccC--cHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhc--cCCEEEEeccccccccccc
Confidence 678999999999999988 665555554433335688999999999998766444433 3444443322 223333
Q ss_pred EEEEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEE
Q 014134 234 YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (430)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv 313 (430)
..+... ....+...+.+++..... ++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||
T Consensus 278 ~~~~~~-~~~~k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLv 355 (434)
T 2db3_A 278 QTIYEV-NKYAKRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLI 355 (434)
T ss_dssp EEEEEC-CGGGHHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEE
T ss_pred eEEEEe-CcHHHHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 333332 345677888888887654 499999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCc-cchHHHHHHHHhccCCCCCch
Q 014134 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGM-DDRRRMEFILSKNQSKNSQSF 385 (430)
Q Consensus 314 ~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~ 385 (430)
||+++++|+|+|++++||+||+|.+.++|+||+||+||.|+.|.+++|+++ ++......+.+.+......++
T Consensus 356 aT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp 428 (434)
T 2db3_A 356 ATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVP 428 (434)
T ss_dssp ECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCC
T ss_pred EchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999999999999999999995 466666667666655444443
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.2e-54 Score=414.70 Aligned_cols=356 Identities=20% Similarity=0.279 Sum_probs=278.9
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC---------------
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------------- 77 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~--------------- 77 (430)
....|+++++++.+.+.|.. +||.+|+++|.++++.++++++++++||||+|||++|++|++..
T Consensus 13 ~~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 13 HIESFSDVEMGEIIMGNIEL-TRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp CCSSGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred ccCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccc
Confidence 34568889999999999998 79999999999999999999999999999999999999988732
Q ss_pred ---------CCeEEEEcchHHHHHHHHHHHHHcC----cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccCh
Q 014134 78 ---------PGIVLVVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144 (430)
Q Consensus 78 ---------~~~~lil~Pt~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~ 144 (430)
.+++||++||++|+.|+++.+.+++ .......++........ .+. .. .+ ++|+||
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~-~~--~~------I~v~Tp 159 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---DLE-RG--CH------LLVATP 159 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HHT-TC--CS------EEEECH
T ss_pred ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---Hhh-CC--CC------EEEECh
Confidence 2579999999999999999998753 33444444333222111 111 11 22 389999
Q ss_pred hHHHHHHHhh--hcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCC--CCcEEEEEcCCCchhHHHHHHHhCCCCC
Q 014134 145 GFMSKLKKIH--SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCLQNP 220 (430)
Q Consensus 145 ~~~~~~~~~~--~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~ 220 (430)
+++..+.... ....+++||+||||++.+++ +...+..+.......+ ..+++++|||+++........++. ++
T Consensus 160 ~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~ 235 (417)
T 2i4i_A 160 GRLVDMMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLD--EY 235 (417)
T ss_dssp HHHHHHHHTTSBCCTTCCEEEESSHHHHHHTT--CHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCS--SC
T ss_pred HHHHHHHHcCCcChhhCcEEEEEChhHhhccC--cHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcC--CC
Confidence 9888776543 35668999999999999877 5555444432211222 568999999999887665555543 33
Q ss_pred eEEec---cCCCCceEEEEEecCcchhHHHHHHHHHHhc-CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHH
Q 014134 221 LVLKS---SFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKA 296 (430)
Q Consensus 221 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~ 296 (430)
..+.. ......+...+... ....+...+.++++.. .++++||||++++.++.+++.|.+.+..+..+||++++++
T Consensus 236 ~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 314 (417)
T 2i4i_A 236 IFLAVGRVGSTSENITQKVVWV-EESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 314 (417)
T ss_dssp EEEEEC----CCSSEEEEEEEC-CGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHH
T ss_pred EEEEeCCCCCCccCceEEEEEe-ccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHH
Confidence 33322 12233444444333 3356778888888876 5678999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHh
Q 014134 297 RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (430)
Q Consensus 297 r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~ 376 (430)
|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+...|+||+||+||.|+.|.|++|+++.+...++.+.+.
T Consensus 315 r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 394 (417)
T 2i4i_A 315 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDL 394 (417)
T ss_dssp HHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccCCCCCchh
Q 014134 377 NQSKNSQSFS 386 (430)
Q Consensus 377 ~~~~~~~~~~ 386 (430)
+.......+.
T Consensus 395 ~~~~~~~~~~ 404 (417)
T 2i4i_A 395 LVEAKQEVPS 404 (417)
T ss_dssp HHHTTCCCCH
T ss_pred HHHhcCcCCH
Confidence 7665554443
No 5
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=9.8e-54 Score=411.09 Aligned_cols=349 Identities=19% Similarity=0.322 Sum_probs=281.8
Q ss_pred cccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc------CCCeEEEEcch
Q 014134 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPL 87 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~------~~~~~lil~Pt 87 (430)
...|+.+++++.+.+.|.. +||.+|+++|.++++.+++++++++++|||+|||++|++++++ .+.++||++|+
T Consensus 36 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt 114 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPT 114 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSS
T ss_pred CCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCc
Confidence 4568889999999999998 8999999999999999999999999999999999999998874 36789999999
Q ss_pred HHHHHHHHHHHHHcC----cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh--hhcCCccE
Q 014134 88 IALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNL 161 (430)
Q Consensus 88 ~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~--~~~~~~~~ 161 (430)
++|+.|+.+.+..++ .......++........ .... .. +++|+||+++..+... .....+++
T Consensus 115 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~-~~--------~ivv~Tp~~l~~~l~~~~~~~~~~~~ 182 (410)
T 2j0s_A 115 RELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIR---KLDY-GQ--------HVVAGTPGRVFDMIRRRSLRTRAIKM 182 (410)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHH---HHHH-CC--------SEEEECHHHHHHHHHTTSSCCTTCCE
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHH---Hhhc-CC--------CEEEcCHHHHHHHHHhCCccHhheeE
Confidence 999999999998864 33333333332222111 1111 11 2289999988877654 33556899
Q ss_pred EEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEec---cCCCCceEEEEE
Q 014134 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVR 237 (430)
Q Consensus 162 lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 237 (430)
||+||||++.+++ +. ..+..+....+ +.|++++|||+++........+ ..++..+.. ......+.....
T Consensus 183 vViDEah~~~~~~--~~---~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 255 (410)
T 2j0s_A 183 LVLDEADEMLNKG--FK---EQIYDVYRYLPPATQVVLISATLPHEILEMTNKF--MTDPIRILVKRDELTLEGIKQFFV 255 (410)
T ss_dssp EEEETHHHHTSTT--TH---HHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGT--CSSCEEECCCGGGCSCTTEEEEEE
T ss_pred EEEccHHHHHhhh--hH---HHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHH--cCCCEEEEecCccccCCCceEEEE
Confidence 9999999998877 44 33444555554 6889999999998755433222 233443322 223344555555
Q ss_pred ecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc
Q 014134 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (430)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~ 317 (430)
.......+...+.+++.....+++||||++++.++.+++.|.+.+..+..+||++++.+|..+++.|++|+.+|||||++
T Consensus 256 ~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 335 (410)
T 2j0s_A 256 AVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV 335 (410)
T ss_dssp EESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGG
T ss_pred EeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECCh
Confidence 55555668888888888877789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCCC
Q 014134 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382 (430)
Q Consensus 318 ~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~ 382 (430)
+++|+|+|++++||++++|++...|+||+||+||.|+.|.+++|+++.+...++.+.+..+....
T Consensus 336 ~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 400 (410)
T 2j0s_A 336 WARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 400 (410)
T ss_dssp GSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCE
T ss_pred hhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCce
Confidence 99999999999999999999999999999999999999999999999999999998887766543
No 6
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.6e-52 Score=399.93 Aligned_cols=352 Identities=20% Similarity=0.261 Sum_probs=279.5
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc------CCCeEEEEcc
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSP 86 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~------~~~~~lil~P 86 (430)
....|+++++++.+.+.|.+ +||.+|+++|.++++.+++++++++++|||+|||++|+++++. .+.+++|++|
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 97 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFE-AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVP 97 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred ccCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcC
Confidence 34578999999999999998 8999999999999999999999999999999999999988874 3568999999
Q ss_pred hHHHHHHHHHHHHHcC----cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh--hhcCCcc
Q 014134 87 LIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLN 160 (430)
Q Consensus 87 t~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~--~~~~~~~ 160 (430)
+++|+.|+.+.+..++ .......+....... .. . .....++ +|+||+.+..+... .....++
T Consensus 98 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~-~---~~~~~~I------vv~T~~~l~~~~~~~~~~~~~~~ 165 (400)
T 1s2m_A 98 TRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDD--IL-R---LNETVHI------LVGTPGRVLDLASRKVADLSDCS 165 (400)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHH--HH-H---TTSCCSE------EEECHHHHHHHHHTTCSCCTTCC
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHH--HH-H---hcCCCCE------EEEchHHHHHHHHhCCcccccCC
Confidence 9999999999998863 334444433322211 11 1 1112223 89999988776543 3456689
Q ss_pred EEEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEec
Q 014134 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 239 (430)
Q Consensus 161 ~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (430)
++|+||||++.+.+ +. ..+..+....+ ..+++++|||++......+...+................+.......
T Consensus 166 ~vIiDEaH~~~~~~--~~---~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (400)
T 1s2m_A 166 LFIMDEADKMLSRD--FK---TIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFV 240 (400)
T ss_dssp EEEEESHHHHSSHH--HH---HHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEEC
T ss_pred EEEEeCchHhhhhc--hH---HHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEe
Confidence 99999999987644 33 33444455444 67899999999998777666655432211112222233333333322
Q ss_pred CcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecccc
Q 014134 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (430)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 319 (430)
....+...+..++.....+++||||++++.++.+++.|++.+..+..+||+++..+|..+++.|++|+.+|||||++++
T Consensus 241 -~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 319 (400)
T 1s2m_A 241 -EERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLT 319 (400)
T ss_dssp -CGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSS
T ss_pred -chhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccc
Confidence 3356777888888887888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCCCC
Q 014134 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383 (430)
Q Consensus 320 ~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 383 (430)
+|+|+|++++||++++|+++..|+||+||+||.|+.|.|+++++++|...++.+.+..+.....
T Consensus 320 ~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~ 383 (400)
T 1s2m_A 320 RGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAA 383 (400)
T ss_dssp SSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEE
T ss_pred cCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccc
Confidence 9999999999999999999999999999999999999999999999999999998887665443
No 7
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=6.5e-51 Score=389.07 Aligned_cols=348 Identities=16% Similarity=0.247 Sum_probs=275.7
Q ss_pred ccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC------CCeEEEEcchH
Q 014134 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~------~~~~lil~Pt~ 88 (430)
..|+++++++.+.+.|.+ +||.+|+|+|.++++.+++++++++.+|||+|||++|+++++.. +.++||++|++
T Consensus 8 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 86 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 86 (391)
T ss_dssp -CGGGGCCCHHHHHHHHH-HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCH
Confidence 468889999999999998 89999999999999999999999999999999999999888743 56899999999
Q ss_pred HHHHHHHHHHHHc-----CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh--hcCCccE
Q 014134 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SRGLLNL 161 (430)
Q Consensus 89 ~L~~q~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~--~~~~~~~ 161 (430)
+|+.|+.+.+.++ +.......++......... +.....++ +|+||+.+..+.... ....+++
T Consensus 87 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~i--------iv~T~~~l~~~~~~~~~~~~~~~~ 155 (391)
T 1xti_A 87 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHI--------VVGTPGRILALARNKSLNLKHIKH 155 (391)
T ss_dssp HHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSE--------EEECHHHHHHHHHTTSSCCTTCSE
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCE--------EEECHHHHHHHHHcCCccccccCE
Confidence 9999999999886 4555555554433222211 12222223 899999888775543 3567899
Q ss_pred EEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccC----CCCceEEEE
Q 014134 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF----NRPNLFYEV 236 (430)
Q Consensus 162 lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 236 (430)
||+||||++.++. .+. ..+..+....+ +.+++++|||+++.....+...+.. +..+.... ....+....
T Consensus 156 vViDEaH~~~~~~-~~~---~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 229 (391)
T 1xti_A 156 FILDECDKMLEQL-DMR---RDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQD--PMEIFVDDETKLTLHGLQQYY 229 (391)
T ss_dssp EEECSHHHHTSSH-HHH---HHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSS--CEEEECCCCCCCCCTTCEEEE
T ss_pred EEEeCHHHHhhcc-chH---HHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCC--CeEEEecCccccCcccceEEE
Confidence 9999999987631 133 33444555544 7889999999999877765555543 33332211 122233322
Q ss_pred EecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEec
Q 014134 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (430)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (430)
. ......+...+.+++....++++||||++++.++.+++.|.+.+..+..+||++++.+|..+++.|++|+.+|||||+
T Consensus 230 ~-~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 308 (391)
T 1xti_A 230 V-KLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 308 (391)
T ss_dssp E-ECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC
T ss_pred E-EcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC
Confidence 2 223456778888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCcc-chHHHHHHHHhccCCC
Q 014134 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSKNQSKN 381 (430)
Q Consensus 317 ~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~-~~~~~~~~~~~~~~~~ 381 (430)
++++|+|+|++++||++++|+|+..|+||+||+||.|+.|.+++++++. +...++.+.+......
T Consensus 309 ~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (391)
T 1xti_A 309 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNI 374 (391)
T ss_dssp CCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCC
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCCh
Confidence 9999999999999999999999999999999999999999999999877 4466677766665543
No 8
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.6e-52 Score=403.26 Aligned_cols=353 Identities=19% Similarity=0.281 Sum_probs=270.4
Q ss_pred cccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc------CCCeEEEEcch
Q 014134 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPL 87 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~------~~~~~lil~Pt 87 (430)
...|+.+++++.+.+.|.+ +|+.+|+++|.++++.++++++++++||||+|||++|++++++ .+.+++|++|+
T Consensus 39 ~~~f~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 117 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPT 117 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred hcCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeCh
Confidence 4567788999999999998 8999999999999999999999999999999999999988874 46789999999
Q ss_pred HHHHHHHHHHHHHcC----cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh--hhcCCccE
Q 014134 88 IALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNL 161 (430)
Q Consensus 88 ~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~--~~~~~~~~ 161 (430)
++|+.|+.+.+..++ .......++..... ...........+ +|+||+++.++... .....+++
T Consensus 118 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i--------iv~T~~~l~~~l~~~~~~~~~~~~ 186 (414)
T 3eiq_A 118 RELAQQIQKVVMALGDYMGASCHACIGGTNVRA---EVQKLQMEAPHI--------IVGTPGRVFDMLNRRYLSPKYIKM 186 (414)
T ss_dssp HHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHH---HHHHHTTTCCSE--------EEECHHHHHHHHHHTSSCSTTCCE
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEECCcchHH---HHHHHhcCCCCE--------EEECHHHHHHHHHcCCcccccCcE
Confidence 999999999998863 33333333222211 112222222233 89999988877654 33566899
Q ss_pred EEEecCccccccCCCcHHHHHHHHHHHhhC-CCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEec---cCCCCceEEEEE
Q 014134 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVR 237 (430)
Q Consensus 162 lViDE~h~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 237 (430)
||+||||++.+++ +. ..+..+.... ++.|++++|||+++.........+ .++..+.. ......+.....
T Consensus 187 vViDEah~~~~~~--~~---~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 259 (414)
T 3eiq_A 187 FVLDEADEMLSRG--FK---DQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFM--RDPIRILVKKEELTLEGIRQFYI 259 (414)
T ss_dssp EEECSHHHHHHTT--TH---HHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTC--SSCEEECCCCCCCCTTSCCEEEE
T ss_pred EEEECHHHhhccC--cH---HHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHc--CCCEEEEecCCccCCCCceEEEE
Confidence 9999999998876 44 3344444444 578999999999987766444333 33433322 222334455555
Q ss_pred ecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc
Q 014134 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (430)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~ 317 (430)
.......+...+.+++.....+++||||++++.++.+++.|.+.+..+..+||++++.+|..+++.|++|+.+|||||++
T Consensus 260 ~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 339 (414)
T 3eiq_A 260 NVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 339 (414)
T ss_dssp ECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSS
T ss_pred EeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCc
Confidence 55556678899999999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCCCCch
Q 014134 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385 (430)
Q Consensus 318 ~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (430)
+++|+|+|++++||++++|.|..+|+||+||+||.|+.|.|++++++.+...++.+.+..+......+
T Consensus 340 ~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (414)
T 3eiq_A 340 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMP 407 (414)
T ss_dssp CC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECC
T ss_pred cccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999888766654443
No 9
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.5e-51 Score=411.65 Aligned_cols=346 Identities=18% Similarity=0.249 Sum_probs=266.8
Q ss_pred ChHHHHHHHHHHhcCCccchHHHHHHHHHHH--cCCCEEEEcCCCChHHHHhHHhhhcC----------CCeEEEEcchH
Q 014134 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVSPLI 88 (430)
Q Consensus 21 ~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~--~~~~~lv~a~tGsGKT~~~~~~~l~~----------~~~~lil~Pt~ 88 (430)
.+++.+.+.|.. +||.+|+|+|.++++.++ .+++++++||||+|||++|++|+++. ..++||++||+
T Consensus 27 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr 105 (579)
T 3sqw_A 27 VLDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTR 105 (579)
T ss_dssp SSCHHHHHHHHT-TTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSH
T ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchH
Confidence 489999999997 899999999999999999 67899999999999999999998732 35899999999
Q ss_pred HHHHHHHHHHHHcC--------cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh---hhcC
Q 014134 89 ALMENQVIGLKEKG--------IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI---HSRG 157 (430)
Q Consensus 89 ~L~~q~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~---~~~~ 157 (430)
+|+.|+.+.+..+. .......++..... ....+.....++ +|+||+++..++.. ....
T Consensus 106 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~~~~~I--------lV~Tp~~l~~~l~~~~~~~~~ 174 (579)
T 3sqw_A 106 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNI--------VIATPGRLIDVLEKYSNKFFR 174 (579)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSE--------EEECHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhhcccccceEEEEEECCccHHH---HHHHHhcCCCCE--------EEECHHHHHHHHHhccccccc
Confidence 99999999998752 11222222222211 111221212223 99999988776543 3467
Q ss_pred CccEEEEecCccccccCCCcHHHHHHHHHHHhhCC-----CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEecc-----C
Q 014134 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-----DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-----F 227 (430)
Q Consensus 158 ~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-----~ 227 (430)
.+++||+||||++.++| |...+..+........ +.|+++||||+++.+.......+.......+... .
T Consensus 175 ~~~~lViDEah~l~~~g--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~ 252 (579)
T 3sqw_A 175 FVDYKVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 252 (579)
T ss_dssp TCCEEEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCS
T ss_pred cCCEEEEEChHHhhcCC--CHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccc
Confidence 79999999999999988 7777766655554322 6789999999999876644443333222222221 1
Q ss_pred CCCceEEEEEecCcchh----HHHHHHHHHHh-cCCceEEEEeCccccHHHHHHHHHcC---CCcceeecCCCCHHHHHH
Q 014134 228 NRPNLFYEVRYKDLLDD----AYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSS 299 (430)
Q Consensus 228 ~~~~~~~~~~~~~~~~~----~~~~l~~~l~~-~~~~~~iVf~~s~~~~~~l~~~l~~~---~~~~~~~hg~~~~~~r~~ 299 (430)
....+............ .+..+...+.. .++.++||||++++.++.+++.|++. +..+..+||+|++.+|..
T Consensus 253 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~ 332 (579)
T 3sqw_A 253 AHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTS 332 (579)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHH
T ss_pred cccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHH
Confidence 12233333333333222 23334444443 45779999999999999999999876 889999999999999999
Q ss_pred HHHHhhcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccC
Q 014134 300 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (430)
Q Consensus 300 ~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~ 379 (430)
+++.|++|+.+|||||+++++|+|+|++++||++++|.++..|+||+||+||.|+.|.|++++.+.+...++.+.+....
T Consensus 333 ~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~ 412 (579)
T 3sqw_A 333 LVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNI 412 (579)
T ss_dssp HHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCC
T ss_pred HHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877644
Q ss_pred C
Q 014134 380 K 380 (430)
Q Consensus 380 ~ 380 (430)
.
T Consensus 413 ~ 413 (579)
T 3sqw_A 413 V 413 (579)
T ss_dssp C
T ss_pred C
Confidence 3
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=7.7e-51 Score=391.28 Aligned_cols=346 Identities=19% Similarity=0.233 Sum_probs=275.7
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcC--CCEEEEcCCCChHHHHhHHhhhc------CCCeEEEE
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALA------KPGIVLVV 84 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~--~~~lv~a~tGsGKT~~~~~~~l~------~~~~~lil 84 (430)
....|+.+++++.+.+.|.+ +||.+|+++|.++++.++++ ++++++||||+|||++|+++++. .+.++||+
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil 101 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 101 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred ccCCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEE
Confidence 45678999999999999998 89999999999999999987 89999999999999999988873 24589999
Q ss_pred cchHHHHHHHHHHHHHcCc-----ceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh---hhc
Q 014134 85 SPLIALMENQVIGLKEKGI-----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI---HSR 156 (430)
Q Consensus 85 ~Pt~~L~~q~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~---~~~ 156 (430)
+|+++|+.|+.+.+..++. ............ ..... ...++|+||+++..+... ...
T Consensus 102 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~--------~~~ivv~T~~~l~~~~~~~~~~~~ 166 (412)
T 3fht_A 102 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQKI--------SEQIVIGTPGTVLDWCSKLKFIDP 166 (412)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCC-------TTCCC--------CCSEEEECHHHHHHHHTTSCSSCG
T ss_pred CCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchh-------hhhcC--------CCCEEEECchHHHHHHHhcCCcCh
Confidence 9999999999999888632 222222211100 00011 123389999988777643 334
Q ss_pred CCccEEEEecCccccc-cCCCcHHHHHHHHHHHhhC-CCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEec---cCCCCc
Q 014134 157 GLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPN 231 (430)
Q Consensus 157 ~~~~~lViDE~h~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 231 (430)
..+++||+||||++.+ .+ +...+ ..+.... ++.|++++|||+++.........+. ++..+.. ......
T Consensus 167 ~~~~~iViDEah~~~~~~~--~~~~~---~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 239 (412)
T 3fht_A 167 KKIKVFVLDEADVMIATQG--HQDQS---IRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVP--DPNVIKLKREEETLDT 239 (412)
T ss_dssp GGCCEEEEETHHHHHSTTT--THHHH---HHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSS--SCEEECCCGGGSSCTT
T ss_pred hhCcEEEEeCHHHHhhcCC--cHHHH---HHHHhhCCCCceEEEEEeecCHHHHHHHHHhcC--CCeEEeeccccccccC
Confidence 6689999999999876 34 43333 3334443 3678999999999987775555543 3333322 233445
Q ss_pred eEEEEEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceE
Q 014134 232 LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (430)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~v 311 (430)
+............+...+..++....++++||||++++.++.+++.|.+.+..+..+||++++.+|..+++.|++|+.+|
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 319 (412)
T 3fht_A 240 IKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 319 (412)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred ceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcE
Confidence 55555666666788888999988878889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccccCceEEEEecCC------CCHHHHHHHhccCCCCCCCceEEEeeCccc-hHHHHHHHHhccCCC
Q 014134 312 VVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFILSKNQSKN 381 (430)
Q Consensus 312 Lv~T~~~~~Gidi~~~~~vi~~~~p------~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~-~~~~~~~~~~~~~~~ 381 (430)
||||+++++|+|+|++++||++++| .+..+|+||+||+||.|+.|.+++++++.+ ...++.+.+......
T Consensus 320 lv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~ 396 (412)
T 3fht_A 320 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKI 396 (412)
T ss_dssp EEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCC
T ss_pred EEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCcc
Confidence 9999999999999999999999999 578999999999999999999999998775 677777777665543
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=7.4e-51 Score=389.13 Aligned_cols=343 Identities=17% Similarity=0.243 Sum_probs=272.3
Q ss_pred cccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcC--CCEEEEcCCCChHHHHhHHhhhc------CCCeEEEEc
Q 014134 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVS 85 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~--~~~lv~a~tGsGKT~~~~~~~l~------~~~~~lil~ 85 (430)
...|+.+++++.+.+.|.+ +||.+|+|+|.++++.++.+ ++++++||||+|||++|+++++. .+.++||++
T Consensus 4 ~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 82 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLA 82 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred ccCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEEC
Confidence 3678999999999999998 89999999999999999998 89999999999999999988864 366899999
Q ss_pred chHHHHHHHHHHHHHcCcc----eeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh--hcCCc
Q 014134 86 PLIALMENQVIGLKEKGIA----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SRGLL 159 (430)
Q Consensus 86 Pt~~L~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~--~~~~~ 159 (430)
|+++|+.|+.+.+.+++.. .......... ..... ...++|+||+.+..+.... ....+
T Consensus 83 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~------~~~iiv~T~~~l~~~~~~~~~~~~~~ 146 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFTKITSQLIVPDSFE----------KNKQI------NAQVIVGTPGTVLDLMRRKLMQLQKI 146 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSC----------TTSCB------CCSEEEECHHHHHHHHHTTCBCCTTC
T ss_pred CCHHHHHHHHHHHHHHhcccCeeEEEEecCchh----------hhccC------CCCEEEEcHHHHHHHHHcCCcccccC
Confidence 9999999999999986422 2222211110 00011 1233899999887775433 35678
Q ss_pred cEEEEecCccccc-cCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEe-ccCCCCceEEEE
Q 014134 160 NLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK-SSFNRPNLFYEV 236 (430)
Q Consensus 160 ~~lViDE~h~~~~-~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 236 (430)
++||+||||++.+ .+ +... +..+....+ +.|++++|||+++.........+......... .......+....
T Consensus 147 ~~iIiDEah~~~~~~~--~~~~---~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (395)
T 3pey_A 147 KIFVLDEADNMLDQQG--LGDQ---CIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLY 221 (395)
T ss_dssp CEEEEETHHHHHHSTT--HHHH---HHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEE
T ss_pred CEEEEEChhhhcCccc--cHHH---HHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEE
Confidence 9999999999876 33 4333 334444443 68899999999988766555544333222222 223344455555
Q ss_pred EecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEec
Q 014134 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (430)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (430)
........+...+..++....++++||||++++.++.+++.|++.+..+..+||++++.+|..+++.|++|+.+|||||+
T Consensus 222 ~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 301 (395)
T 3pey_A 222 MDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN 301 (395)
T ss_dssp EECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG
T ss_pred EEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC
Confidence 55556677888888888877888999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCceEEEEecCCC------CHHHHHHHhccCCCCCCCceEEEeeCccc-hHHHHHHHHhcc
Q 014134 317 AFGMGIDRKDVRLVCHFNIPK------SMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFILSKNQ 378 (430)
Q Consensus 317 ~~~~Gidi~~~~~vi~~~~p~------s~~~~~q~~GR~~R~g~~g~~i~~~~~~~-~~~~~~~~~~~~ 378 (430)
++++|+|+|++++||++++|+ |+..|+||+||+||.|+.|.+++++.+.+ ...++.+.+...
T Consensus 302 ~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 302 VLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp GGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred hhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 999999999999999999999 99999999999999999999999998754 455566655554
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.8e-51 Score=409.51 Aligned_cols=346 Identities=18% Similarity=0.257 Sum_probs=265.5
Q ss_pred ChHHHHHHHHHHhcCCccchHHHHHHHHHHH--cCCCEEEEcCCCChHHHHhHHhhhcC----------CCeEEEEcchH
Q 014134 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVSPLI 88 (430)
Q Consensus 21 ~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~--~~~~~lv~a~tGsGKT~~~~~~~l~~----------~~~~lil~Pt~ 88 (430)
.+++.+.+.+.. +||.+|+|+|.++++.++ .+++++++||||+|||++|++|+++. ..++||++||+
T Consensus 78 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr 156 (563)
T 3i5x_A 78 VLDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTR 156 (563)
T ss_dssp SSCHHHHHHHHT-TCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSH
T ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcH
Confidence 388999999997 899999999999999999 66899999999999999999998742 34899999999
Q ss_pred HHHHHHHHHHHHc-----C---cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh---hhcC
Q 014134 89 ALMENQVIGLKEK-----G---IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI---HSRG 157 (430)
Q Consensus 89 ~L~~q~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~---~~~~ 157 (430)
+|+.|+++.+..+ + .......++...... .........++ +|+||+++..+... ....
T Consensus 157 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~I--------iv~Tp~~l~~~l~~~~~~~~~ 225 (563)
T 3i5x_A 157 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAA---MNKMNKLRPNI--------VIATPGRLIDVLEKYSNKFFR 225 (563)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHH---HHHHHHHCCSE--------EEECHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHH---HHHHhcCCCCE--------EEECcHHHHHHHHhccccccc
Confidence 9999999999874 1 122223333222211 11121112223 99999988776543 3467
Q ss_pred CccEEEEecCccccccCCCcHHHHHHHHHHHhh-----CCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEecc-----C
Q 014134 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-----LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-----F 227 (430)
Q Consensus 158 ~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-----~ 227 (430)
.+++||+||||++.+++ |.+.+..+...... .++.|+++||||+++.+.......+.......+... .
T Consensus 226 ~~~~lViDEah~l~~~~--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (563)
T 3i5x_A 226 FVDYKVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 303 (563)
T ss_dssp TCCEEEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCS
T ss_pred cceEEEEeCHHHHhccc--hHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCcc
Confidence 79999999999999988 77776666555433 236789999999998876644433333222222221 1
Q ss_pred CCCceEEEEEecCcchhH----HHHHHHHHHh-cCCceEEEEeCccccHHHHHHHHHcC---CCcceeecCCCCHHHHHH
Q 014134 228 NRPNLFYEVRYKDLLDDA----YADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSS 299 (430)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~----~~~l~~~l~~-~~~~~~iVf~~s~~~~~~l~~~l~~~---~~~~~~~hg~~~~~~r~~ 299 (430)
....+............. ...+...+.. ..+.++||||++++.++.+++.|++. +..+..+||++++.+|..
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~ 383 (563)
T 3i5x_A 304 AHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTS 383 (563)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHH
T ss_pred ccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHH
Confidence 122333333333332222 3333344443 45779999999999999999999876 889999999999999999
Q ss_pred HHHHhhcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccC
Q 014134 300 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (430)
Q Consensus 300 ~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~ 379 (430)
+++.|++|+.+|||||+++++|+|+|++++||++++|.++..|+||+||+||.|+.|.|++++.+.+...++.+.+....
T Consensus 384 ~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~ 463 (563)
T 3i5x_A 384 LVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNI 463 (563)
T ss_dssp HHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCC
T ss_pred HHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877543
Q ss_pred C
Q 014134 380 K 380 (430)
Q Consensus 380 ~ 380 (430)
.
T Consensus 464 ~ 464 (563)
T 3i5x_A 464 V 464 (563)
T ss_dssp C
T ss_pred C
Confidence 3
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.7e-50 Score=377.61 Aligned_cols=344 Identities=19% Similarity=0.303 Sum_probs=274.2
Q ss_pred cccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcC-CCEEEEcCCCChHHHHhHHhhhc-----CCCeEEEEcch
Q 014134 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPL 87 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~-~~~lv~a~tGsGKT~~~~~~~l~-----~~~~~lil~Pt 87 (430)
...|+.+++++.+.+.|.+ +||.+|+++|.++++.++++ +++++.+|||+|||++++++++. .+.+++|++|+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~ 83 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRN-KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPT 83 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSC
T ss_pred cCchhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCC
Confidence 3468889999999999998 79999999999999999988 69999999999999999888763 36789999999
Q ss_pred HHHHHHHHHHHHHc----CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh--hhcCCccE
Q 014134 88 IALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNL 161 (430)
Q Consensus 88 ~~L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~--~~~~~~~~ 161 (430)
++|+.|+.+.+..+ +.......++......... .. ..++ +|+||+.+...... .....+++
T Consensus 84 ~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~--~~~i--------iv~T~~~l~~~~~~~~~~~~~~~~ 150 (367)
T 1hv8_A 84 RELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKA---LK--NANI--------VVGTPGRILDHINRGTLNLKNVKY 150 (367)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHH---HH--TCSE--------EEECHHHHHHHHHTTCSCTTSCCE
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhh---cC--CCCE--------EEecHHHHHHHHHcCCcccccCCE
Confidence 99999999999885 2333333333322221111 11 1222 89999988777654 23567899
Q ss_pred EEEecCccccccCCCcHHHHHHHHHHHhhC-CCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecC
Q 014134 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240 (430)
Q Consensus 162 lViDE~h~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (430)
+|+||||.+.+++ +. ..+..+.... ++.+++++|||+++........++. +...+..... ..+..... ..
T Consensus 151 iIiDEah~~~~~~--~~---~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~-~~ 221 (367)
T 1hv8_A 151 FILDEADEMLNMG--FI---KDVEKILNACNKDKRILLFSATMPREILNLAKKYMG--DYSFIKAKIN-ANIEQSYV-EV 221 (367)
T ss_dssp EEEETHHHHHTTT--TH---HHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCC--SEEEEECCSS-SSSEEEEE-EC
T ss_pred EEEeCchHhhhhc--hH---HHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcC--CCeEEEecCC-CCceEEEE-Ee
Confidence 9999999998876 44 3334444444 4788999999999987766555543 2333332222 22322222 22
Q ss_pred cchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccc
Q 014134 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (430)
Q Consensus 241 ~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 320 (430)
....+...+..+++. .+.++||||++++.++.+++.|++.+..+..+||+++..+|..+++.|++|+.+|||||+++++
T Consensus 222 ~~~~~~~~l~~~l~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~ 300 (367)
T 1hv8_A 222 NENERFEALCRLLKN-KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSR 300 (367)
T ss_dssp CGGGHHHHHHHHHCS-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHH
T ss_pred ChHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhc
Confidence 345677788887774 5678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCC
Q 014134 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381 (430)
Q Consensus 321 Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~ 381 (430)
|+|+|++++||++++|+|+.+|+||+||+||.|+.|.+++++++.+...++.+.+..+...
T Consensus 301 Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 361 (367)
T 1hv8_A 301 GIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKI 361 (367)
T ss_dssp HCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCC
T ss_pred CCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999988776654
No 14
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=6.3e-52 Score=396.50 Aligned_cols=349 Identities=19% Similarity=0.252 Sum_probs=143.2
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc------CCCeEEEEcc
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSP 86 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~------~~~~~lil~P 86 (430)
....|+++++++.+.+.+.. +||.+|+++|.++++.+++++++++++|||+|||++|+++++. .+.++||++|
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P 97 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAP 97 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred ccCChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcC
Confidence 45678999999999999998 8999999999999999999999999999999999999988874 3668999999
Q ss_pred hHHHHHHHHHHHHHcC----cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh--hhcCCcc
Q 014134 87 LIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLN 160 (430)
Q Consensus 87 t~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~--~~~~~~~ 160 (430)
+++|+.|+.+.+..+. .......+............ . .+ ++|+||+.+...... .....++
T Consensus 98 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~--~~------i~v~T~~~l~~~~~~~~~~~~~~~ 164 (394)
T 1fuu_A 98 TRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----D--AQ------IVVGTPGRVFDNIQRRRFRTDKIK 164 (394)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----H--CS------EEEECHHHHHHHHHTTSSCCTTCC
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----C--CC------EEEECHHHHHHHHHhCCcchhhCc
Confidence 9999999999998853 34444444433322221111 1 22 289999987776543 2345689
Q ss_pred EEEEecCccccccCCCcHHHHHHHHHHHhhC-CCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEecc---CCCCceEEEE
Q 014134 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNLFYEV 236 (430)
Q Consensus 161 ~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 236 (430)
++|+||||++.+++ +...+ ..+.... ++.+++++|||+++........++. .+..+... .....+....
T Consensus 165 ~vIiDEah~~~~~~--~~~~~---~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 237 (394)
T 1fuu_A 165 MFILDEADEMLSSG--FKEQI---YQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMR--NPVRILVKKDELTLEGIKQFY 237 (394)
T ss_dssp EEEEETHHHHHHTT--CHHHH---HHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCC--SCEEEEECC------------
T ss_pred EEEEEChHHhhCCC--cHHHH---HHHHHhCCCCceEEEEEEecCHHHHHHHHHhcC--CCeEEEecCccccCCCceEEE
Confidence 99999999998776 55443 3344444 4788999999999987665555543 33322221 1112222222
Q ss_pred EecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEec
Q 014134 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (430)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (430)
........+...+.++++....+++||||++++.++.+++.|++.+..+..+||++++.+|..+++.|++|+.+|||||+
T Consensus 238 ~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 317 (394)
T 1fuu_A 238 VNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 317 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC
Confidence 22222234566677777766778999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCCC
Q 014134 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382 (430)
Q Consensus 317 ~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~ 382 (430)
++++|+|+|++++||++++|+++..|+||+||+||.|+.|.|++++++++...++.+.+.......
T Consensus 318 ~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 383 (394)
T 1fuu_A 318 LLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIE 383 (394)
T ss_dssp ------------------------------------------------------------------
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCccc
Confidence 999999999999999999999999999999999999999999999999998888888776655443
No 15
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.9e-49 Score=367.87 Aligned_cols=327 Identities=19% Similarity=0.247 Sum_probs=255.3
Q ss_pred hHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHHHHHHHc
Q 014134 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK 101 (430)
Q Consensus 22 ~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~ 101 (430)
+++.+.+.|++ +||.+|+|+|.++++.+++++++++.+|||+|||++++++++..+.+++|++|+++|+.|+.+.+.++
T Consensus 1 l~~~i~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 1 MNEKIEQAIRE-MGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp CCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHH
Confidence 35788999998 89999999999999999999999999999999999999999998999999999999999999999875
Q ss_pred C----cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh--hcCCccEEEEecCccccccCC
Q 014134 102 G----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SRGLLNLVAIDEAHCISSWGH 175 (430)
Q Consensus 102 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~--~~~~~~~lViDE~h~~~~~~~ 175 (430)
+ .......++........ ... ..++ +|+||+.+..+.... ....++++|+||||++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~i--------~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~- 145 (337)
T 2z0m_A 80 GRYMDTKVAEVYGGMPYKAQIN---RVR--NADI--------VVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMG- 145 (337)
T ss_dssp TTTSCCCEEEECTTSCHHHHHH---HHT--TCSE--------EEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTT-
T ss_pred hhhcCCcEEEEECCcchHHHHh---hcC--CCCE--------EEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccc-
Confidence 3 34444444333222111 111 1222 899999887765432 35668999999999998877
Q ss_pred CcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCcchhHHHHHHHHHH
Q 014134 176 DFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK 254 (430)
Q Consensus 176 ~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 254 (430)
+. ..+..+....+ ..+++++|||+++.....+..++. ++..+........+........... ......+.
T Consensus 146 -~~---~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 216 (337)
T 2z0m_A 146 -FI---DDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFIT--NYEEIEACIGLANVEHKFVHVKDDW---RSKVQALR 216 (337)
T ss_dssp -CH---HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSC--SCEEEECSGGGGGEEEEEEECSSSS---HHHHHHHH
T ss_pred -cH---HHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcC--CceeeecccccCCceEEEEEeChHH---HHHHHHHH
Confidence 43 33444555555 566889999999987776666553 2333333333334444433332221 22335566
Q ss_pred hcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEec
Q 014134 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (430)
Q Consensus 255 ~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~ 334 (430)
...++++||||++++.++.+++.|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 217 ~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~ 292 (337)
T 2z0m_A 217 ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFD 292 (337)
T ss_dssp TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESS
T ss_pred hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEec
Confidence 6678899999999999999998885 588999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhc
Q 014134 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (430)
Q Consensus 335 ~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~ 377 (430)
+|+|+..|+||+||+||.|+.|.+++|+. .+...++.+.+.+
T Consensus 293 ~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 293 APQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp CCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred CCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 99999999999999999999999999999 7777777775544
No 16
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.6e-51 Score=401.57 Aligned_cols=344 Identities=19% Similarity=0.243 Sum_probs=138.2
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcC--CCEEEEcCCCChHHHHhHHhhhcC------CCeEEEE
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLVV 84 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~--~~~lv~a~tGsGKT~~~~~~~l~~------~~~~lil 84 (430)
....|+.+++++.+.+.|.+ +||.+|+++|.++++.++.+ ++++++||||||||++|+++++.. .+++||+
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil 168 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEE
T ss_pred CcCCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEE
Confidence 34578889999999999998 89999999999999999987 899999999999999999998743 3489999
Q ss_pred cchHHHHHHHHHHHHHcCc-----ceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh---hhc
Q 014134 85 SPLIALMENQVIGLKEKGI-----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI---HSR 156 (430)
Q Consensus 85 ~Pt~~L~~q~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~---~~~ 156 (430)
+|+++|+.|+.+.+..++. ............ ..... ...++|+||+++.++... ...
T Consensus 169 ~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~--------~~~Ivv~Tp~~l~~~l~~~~~~~~ 233 (479)
T 3fmp_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQKI--------SEQIVIGTPGTVLDWCSKLKFIDP 233 (479)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCC-------TTCCC--------CCSEEEECHHHHHHHHTTSCCCCG
T ss_pred eChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccc-------ccccC--------CCCEEEECchHHHHHHHhcCCcCc
Confidence 9999999999888877422 222222211100 00011 113399999988877643 344
Q ss_pred CCccEEEEecCccccc-cCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccC---CCCc
Q 014134 157 GLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPN 231 (430)
Q Consensus 157 ~~~~~lViDE~h~~~~-~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 231 (430)
.++++||+||+|++.+ .+ +... +..+....+ +.|++++|||+++.........+ .++..+.... ....
T Consensus 234 ~~~~~iViDEah~~~~~~~--~~~~---~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~ 306 (479)
T 3fmp_B 234 KKIKVFVLDEADVMIATQG--HQDQ---SIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVV--PDPNVIKLKREEETLDT 306 (479)
T ss_dssp GGCCEEEECCHHHHHTSTT--HHHH---HHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHS--SSEEEEEEC--------
T ss_pred ccCCEEEEECHHHHhhcCC--cHHH---HHHHHhhCCccceEEEEeCCCCHHHHHHHHHHc--CCCeEEeccccccCcCC
Confidence 6799999999999876 34 3333 333444443 78999999999998776555544 3344333221 1222
Q ss_pred eEEEEEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceE
Q 014134 232 LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (430)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~v 311 (430)
+............+...+..++......++||||++++.++.+++.|...+..+..+||++++.+|..+++.|++|+.+|
T Consensus 307 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~i 386 (479)
T 3fmp_B 307 IKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 386 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcE
Confidence 22333333334566777777777767789999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccccCceEEEEecCCC------CHHHHHHHhccCCCCCCCceEEEeeCccc-hHHHHHHHHhccC
Q 014134 312 VVATVAFGMGIDRKDVRLVCHFNIPK------SMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFILSKNQS 379 (430)
Q Consensus 312 Lv~T~~~~~Gidi~~~~~vi~~~~p~------s~~~~~q~~GR~~R~g~~g~~i~~~~~~~-~~~~~~~~~~~~~ 379 (430)
||||+++++|+|+|++++||++++|. +...|+||+||+||.|+.|.+++|+++.+ ...++.+.+....
T Consensus 387 Lv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~ 461 (479)
T 3fmp_B 387 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNK 461 (479)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred EEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCC
Confidence 99999999999999999999999994 66899999999999999999999998765 5666666555543
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.3e-48 Score=375.66 Aligned_cols=332 Identities=16% Similarity=0.197 Sum_probs=249.5
Q ss_pred HHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc---CCCeEEEEcchHHHHHHHHHHHH
Q 014134 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLK 99 (430)
Q Consensus 23 ~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~---~~~~~lil~Pt~~L~~q~~~~~~ 99 (430)
.+++.+.+++.+|+ +|+|+|.++++.++++++++++||||+|||++|+++++. .+.++||++||++|+.|+++.++
T Consensus 7 ~~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 85 (414)
T 3oiy_A 7 YEDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQ 85 (414)
T ss_dssp HHHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHH
Confidence 45677788887888 699999999999999999999999999999999888765 68899999999999999999999
Q ss_pred Hc---CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccC--
Q 014134 100 EK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG-- 174 (430)
Q Consensus 100 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~-- 174 (430)
.+ +.......++............+.....++ +|+||+++.+.........+++||+||||++.+++
T Consensus 86 ~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~I--------iv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 86 KLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHI--------LVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSE--------EEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHccCCceEEEEECCCChhhHHHHHHHhhcCCCCE--------EEECHHHHHHHHHHhccccccEEEEeChHhhhhccch
Confidence 95 556666666665544333444444433334 89999998877776777789999999999876543
Q ss_pred -------CCcHHH-HHHHHHHHh------h---CCCCcEEEEEcC-CCchhHHHHHHHhCCCCCeEEeccCCCCceEEEE
Q 014134 175 -------HDFRPS-YRKLSSLRN------Y---LPDVPILALTAT-AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV 236 (430)
Q Consensus 175 -------~~~~~~-~~~l~~~~~------~---~~~~~~i~~SAT-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (430)
..+.+. +..+..... . .++.|++++||| .+......+......... .........+...+
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~ 235 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTV--GRLVSVARNITHVR 235 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCS--SCCCCCCCSEEEEE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCc--Cccccccccchhee
Confidence 224443 333333222 0 157899999999 454433233332211111 01112233343333
Q ss_pred EecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcce-eecCCCCHHHHHHHHHHhhcCCceEEEE-
Q 014134 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA-AYHAGLNDKARSSVLDDWISSRKQVVVA- 314 (430)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~-~~hg~~~~~~r~~~~~~f~~g~~~vLv~- 314 (430)
... .+...+.++++. .++++||||++++.++.+++.|++.|+.+. .+||+ +|. ++.|++|+++||||
T Consensus 236 ~~~----~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat 304 (414)
T 3oiy_A 236 ISS----RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGV 304 (414)
T ss_dssp ESS----CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEE
T ss_pred ecc----CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEe
Confidence 333 344556666666 347899999999999999999999999998 99995 444 99999999999999
Q ss_pred ---eccccccccccC-ceEEEEecCC--CCHHHHHHHhccCCCCC----CCceEEEeeCccchHHHHHHHHhcc
Q 014134 315 ---TVAFGMGIDRKD-VRLVCHFNIP--KSMEAFYQESGRAGRDQ----LPSKSLLYYGMDDRRRMEFILSKNQ 378 (430)
Q Consensus 315 ---T~~~~~Gidi~~-~~~vi~~~~p--~s~~~~~q~~GR~~R~g----~~g~~i~~~~~~~~~~~~~~~~~~~ 378 (430)
|+++++|+|+|+ +++||++++| .++.+|+||+||+||.| ..|.+++++ ++...++.+.+.+.
T Consensus 305 ~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 305 QAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp CCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred cCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 999999999999 9999999999 99999999999999987 478999998 56666666665555
No 18
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-48 Score=383.69 Aligned_cols=347 Identities=18% Similarity=0.224 Sum_probs=226.6
Q ss_pred cCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcC--CCEEEEcCCCChHHHHhHHhhhcC------CCeEEEEcch
Q 014134 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (430)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~--~~~lv~a~tGsGKT~~~~~~~l~~------~~~~lil~Pt 87 (430)
.+.+.++++.+.+.+.. .|+.+|+++|.++++.++++ ++++++||||+|||++|+++++.. +.++||++|+
T Consensus 120 ~~~~~~l~~~~~~~l~~-~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~ 198 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXX-XXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPS 198 (508)
T ss_dssp --------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSC
T ss_pred ccccccccccccccccc-ccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECc
Confidence 34566788888899987 79999999999999999998 899999999999999998887632 4589999999
Q ss_pred HHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh--hcCCccEEEEe
Q 014134 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SRGLLNLVAID 165 (430)
Q Consensus 88 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~--~~~~~~~lViD 165 (430)
++|+.|+.+.+++++................ . .... ...++|+||+.+....... ....+++||+|
T Consensus 199 ~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~--------~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiD 266 (508)
T 3fho_A 199 RELARQIMDVVTEMGKYTEVKTAFGIKDSVP---K-GAKI--------DAQIVIGTPGTVMDLMKRRQLDARDIKVFVLD 266 (508)
T ss_dssp HHHHHHHHHHHHHHSTTSSCCEEC--------------CC--------CCSEEEECHHHHHHHHHTTCSCCTTCCEEEEC
T ss_pred HHHHHHHHHHHHHhCCccCeeEEEEeCCccc---c-cccC--------CCCEEEECHHHHHHHHHcCCccccCCCEEEEe
Confidence 9999999999999643221111111110000 0 0011 1233899999877765433 35678999999
Q ss_pred cCccccc-cCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEec---cCCCCceEEEEEecC
Q 014134 166 EAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRYKD 240 (430)
Q Consensus 166 E~h~~~~-~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 240 (430)
|||++.+ .+ +...+ ..+...++ +.|++++|||+++........... .+..+.. ......+........
T Consensus 267 EaH~~~~~~~--~~~~~---~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~ 339 (508)
T 3fho_A 267 EADNMLDQQG--LGDQS---MRIKHLLPRNTQIVLFSATFSERVEKYAERFAP--NANEIRLKTEELSVEGIKQLYMDCQ 339 (508)
T ss_dssp CHHHHTTC----CHHHH---HHHHHHSCTTCEEEEEESCCSTHHHHHHHHHST--TCEEECCCCCC----CCCCEEEEC-
T ss_pred chhhhcccCC--cHHHH---HHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcC--CCeEEEeccccCCcccceEEEEECC
Confidence 9999876 34 44333 34444444 788999999999876664444433 2332221 122223333444444
Q ss_pred cchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccc
Q 014134 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (430)
Q Consensus 241 ~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 320 (430)
....+...+..++....++++||||++++.++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||||+++++
T Consensus 340 ~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~ 419 (508)
T 3fho_A 340 SEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIAR 419 (508)
T ss_dssp -CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC----
T ss_pred chHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhc
Confidence 45677788888888777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCceEEEEecCC------CCHHHHHHHhccCCCCCCCceEEEeeCc-cchHHHHHHHHhccCCCC
Q 014134 321 GIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGM-DDRRRMEFILSKNQSKNS 382 (430)
Q Consensus 321 Gidi~~~~~vi~~~~p------~s~~~~~q~~GR~~R~g~~g~~i~~~~~-~~~~~~~~~~~~~~~~~~ 382 (430)
|+|+|++++||+++.| .|+..|+||+||+||.|+.|.+++++.+ .+...++.+.+.......
T Consensus 420 GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~ 488 (508)
T 3fho_A 420 GIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPIT 488 (508)
T ss_dssp -CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC
T ss_pred CCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcc
Confidence 9999999999999999 7899999999999999999999999985 456667777776655543
No 19
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.6e-45 Score=399.37 Aligned_cols=397 Identities=17% Similarity=0.172 Sum_probs=296.3
Q ss_pred ccccCCCCChHH---HHHHHHHHhcCCccchHHHHHHHHHHHcC-CCEEEEcCCCChHHHHhHHhhhc-----CCCeEEE
Q 014134 13 QTQKNKPLHEKE---ALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA-----KPGIVLV 83 (430)
Q Consensus 13 ~~~~~~~~~~~~---~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~-~~~lv~a~tGsGKT~~~~~~~l~-----~~~~~li 83 (430)
+.....+++.+. ...+.+.. .+|..++|+|.++++.++.+ +|++++||||||||+++.++++. .+.+++|
T Consensus 899 ~lldl~plp~s~L~~~~~e~l~~-~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavy 977 (1724)
T 4f92_B 899 ELLDLQPLPVSALRNSAFESLYQ-DKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVY 977 (1724)
T ss_dssp CCCCCCCCBGGGSCCHHHHTTTT-TTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEE
T ss_pred ccccCCCCCcccccCHHHHHHHH-hcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEE
Confidence 334445555443 33444443 37999999999999999865 68999999999999999999863 3678999
Q ss_pred EcchHHHHHHHHHHHHH-c----CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh----
Q 014134 84 VSPLIALMENQVIGLKE-K----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH---- 154 (430)
Q Consensus 84 l~Pt~~L~~q~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~---- 154 (430)
++|+++|++|.+++|.+ + |..+...++....... ... . .+ ++|+||+++..+....
T Consensus 978 i~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~--~~~-----~--~~------IiV~TPEkld~llr~~~~~~ 1042 (1724)
T 4f92_B 978 ITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK--LLG-----K--GN------IIISTPEKWDILSRRWKQRK 1042 (1724)
T ss_dssp ECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH--HHH-----H--CS------EEEECHHHHHHHHTTTTTCH
T ss_pred EcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh--hcC-----C--CC------EEEECHHHHHHHHhCccccc
Confidence 99999999999998865 3 4445554443322211 111 1 12 2899999988776432
Q ss_pred hcCCccEEEEecCcccccc-CCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEe--ccCCCC
Q 014134 155 SRGLLNLVAIDEAHCISSW-GHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRP 230 (430)
Q Consensus 155 ~~~~~~~lViDE~h~~~~~-~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 230 (430)
....+++||+||+|.+.+. |..+...+..+..+....+ +.|+|+||||+++. .++..|++......+. ....+.
T Consensus 1043 ~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~--~dla~WL~~~~~~~~~~~~~~RPv 1120 (1724)
T 4f92_B 1043 NVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA--KDVAHWLGCSATSTFNFHPNVRPV 1120 (1724)
T ss_dssp HHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH--HHHHHHHTCCSTTEEECCGGGCSS
T ss_pred ccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH--HHHHHHhCCCCCCeEEeCCCCCCC
Confidence 3556999999999998763 2223334455555554443 78999999999875 6678888766544333 333333
Q ss_pred ceEEEEEecCcch--hHH----HHHHHHHH-hcCCceEEEEeCccccHHHHHHHHHcC----------------------
Q 014134 231 NLFYEVRYKDLLD--DAY----ADLCSVLK-ANGDTCAIVYCLERTTCDELSAYLSAG---------------------- 281 (430)
Q Consensus 231 ~~~~~~~~~~~~~--~~~----~~l~~~l~-~~~~~~~iVf~~s~~~~~~l~~~l~~~---------------------- 281 (430)
.+...+....... ... ..+...+. ...++++||||+|++.|+.++..|...
T Consensus 1121 pL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l 1200 (1724)
T 4f92_B 1121 PLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYL 1200 (1724)
T ss_dssp CEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHH
T ss_pred CeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHH
Confidence 3433333222211 111 12222332 345779999999999999888766321
Q ss_pred ------------CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEE----------ecCCCCH
Q 014134 282 ------------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----------FNIPKSM 339 (430)
Q Consensus 282 ------------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~----------~~~p~s~ 339 (430)
..+++.|||+|++.+|..+++.|++|.++|||||+++++|||+|...+||. ...|.++
T Consensus 1201 ~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~ 1280 (1724)
T 4f92_B 1201 EKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPI 1280 (1724)
T ss_dssp TTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCH
T ss_pred hhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCH
Confidence 135789999999999999999999999999999999999999999999883 2336789
Q ss_pred HHHHHHhccCCCCCC--CceEEEeeCccchHHHHHHHHhccCCCCCchhhhHHHHHHhhhhccccccceeecCcceeeee
Q 014134 340 EAFYQESGRAGRDQL--PSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERWLITVKVLDVAGKRFSRVLGNRYLYHY 417 (430)
Q Consensus 340 ~~~~q~~GR~~R~g~--~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (430)
.+|.||+|||||.|. .|.|++++.+.+...++.++....+.++.+...+.+.++.+...+.+.+..+...+.+|+|.|
T Consensus 1281 ~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~ 1360 (1724)
T 4f92_B 1281 YDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLY 1360 (1724)
T ss_dssp HHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHH
T ss_pred HHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHH
Confidence 999999999999986 799999999999999999999988888888888899999999999999999999999999999
Q ss_pred ccccccCCCc
Q 014134 418 VKTHAMPANI 427 (430)
Q Consensus 418 ~~~~~~~s~~ 427 (430)
.+...+|+|-
T Consensus 1361 ~r~~~nP~~y 1370 (1724)
T 4f92_B 1361 RRMTQNPNYY 1370 (1724)
T ss_dssp HHHHHSGGGT
T ss_pred HHHhcCcccc
Confidence 8888888763
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.4e-44 Score=370.19 Aligned_cols=326 Identities=20% Similarity=0.233 Sum_probs=243.2
Q ss_pred cccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHH-HHcCCCEEEEcCCCChHHHHhHHhhh----cCCCeEEEEcchH
Q 014134 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLI 88 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~-l~~~~~~lv~a~tGsGKT~~~~~~~l----~~~~~~lil~Pt~ 88 (430)
...|+++++++.+.+.+++ +||.+|+++|.++++. +.++++++++||||||||+++.++++ .++.+++|++|++
T Consensus 7 ~~~~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r 85 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKK-RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLR 85 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHT-TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCH
T ss_pred cCcHHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcH
Confidence 3468889999999999998 8999999999999999 77899999999999999999988886 3578999999999
Q ss_pred HHHHHHHHHHHH---cCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh--hcCCccEEE
Q 014134 89 ALMENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SRGLLNLVA 163 (430)
Q Consensus 89 ~L~~q~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~--~~~~~~~lV 163 (430)
+|+.|+++.++. +|.......+....... .. . .+.++|+||+.+..+.... .+..+++||
T Consensus 86 ~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-----~~--~--------~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vI 150 (715)
T 2va8_A 86 ALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA-----WL--K--------NYDIIITTYEKLDSLWRHRPEWLNEVNYFV 150 (715)
T ss_dssp HHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG-----GG--G--------GCSEEEECHHHHHHHHHHCCGGGGGEEEEE
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh-----hc--C--------CCCEEEEcHHHHHHHHhCChhHhhccCEEE
Confidence 999999999854 35555554443322110 00 0 1233899999888875543 256789999
Q ss_pred EecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEE---------
Q 014134 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--------- 234 (430)
Q Consensus 164 iDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 234 (430)
+||+|.+.+.+ +...+.. +....++.++++||||+++. ..+..++... .+........+..
T Consensus 151 iDE~H~l~~~~--~~~~l~~---i~~~~~~~~ii~lSATl~n~--~~~~~~l~~~---~~~~~~r~~~l~~~~~~~~~~~ 220 (715)
T 2va8_A 151 LDELHYLNDPE--RGPVVES---VTIRAKRRNLLALSATISNY--KQIAKWLGAE---PVATNWRPVPLIEGVIYPERKK 220 (715)
T ss_dssp ECSGGGGGCTT--THHHHHH---HHHHHHTSEEEEEESCCTTH--HHHHHHHTCE---EEECCCCSSCEEEEEEEECSST
T ss_pred EechhhcCCcc--cchHHHH---HHHhcccCcEEEEcCCCCCH--HHHHHHhCCC---ccCCCCCCCCceEEEEecCCcc
Confidence 99999987644 4433333 33333478999999999863 5556666421 1222211111111
Q ss_pred ---EEEecC-------cchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCC----------------------
Q 014134 235 ---EVRYKD-------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG---------------------- 282 (430)
Q Consensus 235 ---~~~~~~-------~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~---------------------- 282 (430)
.....+ ........+.+.+. .++++||||++++.++.+++.|.+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~ 298 (715)
T 2va8_A 221 KEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEE 298 (715)
T ss_dssp TEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCS
T ss_pred cceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhh
Confidence 111111 01344555555554 46799999999999999999998642
Q ss_pred --------------CcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEE----ec-------CCC
Q 014134 283 --------------ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN-------IPK 337 (430)
Q Consensus 283 --------------~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~----~~-------~p~ 337 (430)
.++..+||+++..+|..+++.|++|.++|||||+++++|+|+|++++||+ |+ .|.
T Consensus 299 ~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~ 378 (715)
T 2va8_A 299 GGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEI 378 (715)
T ss_dssp SCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------
T ss_pred ccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcC
Confidence 24889999999999999999999999999999999999999999999998 88 799
Q ss_pred CHHHHHHHhccCCCCCC--CceEEEeeCccch
Q 014134 338 SMEAFYQESGRAGRDQL--PSKSLLYYGMDDR 367 (430)
Q Consensus 338 s~~~~~q~~GR~~R~g~--~g~~i~~~~~~~~ 367 (430)
|..+|.||+||+||.|. .|.|+++++..+.
T Consensus 379 s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 379 PIMEYKQMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred CHHHHHHHhhhcCCCCCCCCceEEEEeCCchH
Confidence 99999999999999884 7899999987763
No 21
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=9.3e-45 Score=370.26 Aligned_cols=327 Identities=22% Similarity=0.245 Sum_probs=243.7
Q ss_pred CCCCC--hHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh---cCCCeEEEEcchHHHH
Q 014134 17 NKPLH--EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALM 91 (430)
Q Consensus 17 ~~~~~--~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt~~L~ 91 (430)
|++++ +++.+.+.+++ +||.+|+++|.++++.+.++++++++||||||||+++.++++ .++.+++|++|+++|+
T Consensus 3 f~~l~~~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La 81 (702)
T 2p6r_A 3 VEELAESISSYAVGILKE-EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALA 81 (702)
T ss_dssp SHHHHHHHHHHHHHHHHC-C---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHH
T ss_pred hhhhhhccCHHHHHHHHh-CCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHH
Confidence 56677 89999999997 899999999999999999999999999999999999988886 4578999999999999
Q ss_pred HHHHHHHHHc---CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhh--cCCccEEEEec
Q 014134 92 ENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS--RGLLNLVAIDE 166 (430)
Q Consensus 92 ~q~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~--~~~~~~lViDE 166 (430)
.|++++++.+ |.......+....... ... .+.++|+||+++..+..... ...+++||+||
T Consensus 82 ~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~--------~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE 146 (702)
T 2p6r_A 82 GEKYESFKKWEKIGLRIGISTGDYESRDE-------HLG--------DCDIIVTTSEKADSLIRNRASWIKAVSCLVVDE 146 (702)
T ss_dssp HHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CST--------TCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETT
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hcc--------CCCEEEECHHHHHHHHHcChhHHhhcCEEEEee
Confidence 9999998553 4455555443322110 001 12338999998888765432 56789999999
Q ss_pred CccccccCCCcHHHHHHH-HHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEe------c
Q 014134 167 AHCISSWGHDFRPSYRKL-SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY------K 239 (430)
Q Consensus 167 ~h~~~~~~~~~~~~~~~l-~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 239 (430)
+|.+.+++ ....+..+ ..+....++.|+++||||+++. ..+..++.. ..+........+...+.. .
T Consensus 147 ~H~l~~~~--r~~~~~~ll~~l~~~~~~~~ii~lSATl~n~--~~~~~~l~~---~~~~~~~r~~~l~~~~~~~~~~~~~ 219 (702)
T 2p6r_A 147 IHLLDSEK--RGATLEILVTKMRRMNKALRVIGLSATAPNV--TEIAEWLDA---DYYVSDWRPVPLVEGVLCEGTLELF 219 (702)
T ss_dssp GGGGGCTT--THHHHHHHHHHHHHHCTTCEEEEEECCCTTH--HHHHHHTTC---EEEECCCCSSCEEEEEECSSEEEEE
T ss_pred eeecCCCC--cccHHHHHHHHHHhcCcCceEEEECCCcCCH--HHHHHHhCC---CcccCCCCCccceEEEeeCCeeecc
Confidence 99998754 33333332 2233344688999999999863 556666642 122222222222111110 0
Q ss_pred C------cchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcC------------------------------CC
Q 014134 240 D------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------------------------------GI 283 (430)
Q Consensus 240 ~------~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~------------------------------~~ 283 (430)
+ ........+.+.+. +++++||||++++.++.+++.|.+. +.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 297 (702)
T 2p6r_A 220 DGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRK 297 (702)
T ss_dssp ETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred CcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhc
Confidence 0 00114555555554 4678999999999999999988752 13
Q ss_pred cceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEE----ec---CCCCHHHHHHHhccCCCCC--C
Q 014134 284 SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN---IPKSMEAFYQESGRAGRDQ--L 354 (430)
Q Consensus 284 ~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~----~~---~p~s~~~~~q~~GR~~R~g--~ 354 (430)
++..+||++++++|..+++.|++|+++|||||+++++|+|+|++++||+ || .|.|..+|.||+||+||.| .
T Consensus 298 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~ 377 (702)
T 2p6r_A 298 GAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDE 377 (702)
T ss_dssp TCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCS
T ss_pred CeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCC
Confidence 5889999999999999999999999999999999999999999999998 66 6899999999999999998 4
Q ss_pred CceEEEeeCccchH
Q 014134 355 PSKSLLYYGMDDRR 368 (430)
Q Consensus 355 ~g~~i~~~~~~~~~ 368 (430)
.|.|++++...+..
T Consensus 378 ~G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 378 RGEAIIIVGKRDRE 391 (702)
T ss_dssp CEEEEEECCGGGHH
T ss_pred CceEEEEecCccHH
Confidence 78999999888743
No 22
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=3.7e-44 Score=366.86 Aligned_cols=326 Identities=21% Similarity=0.260 Sum_probs=245.4
Q ss_pred cCCCCChHHHHHHHHHHhcCCccchHHHHHHHHH-HHcCCCEEEEcCCCChHHHHhHHhhhc----CCCeEEEEcchHHH
Q 014134 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIAL 90 (430)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~-l~~~~~~lv~a~tGsGKT~~~~~~~l~----~~~~~lil~Pt~~L 90 (430)
.|+++++++.+.+.+++ +||.+|+++|.++++. +.++++++++||||||||+++.++++. ++.+++|++|+++|
T Consensus 2 ~f~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raL 80 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKE-RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKAL 80 (720)
T ss_dssp BGGGCCSCHHHHHHHHH-TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGG
T ss_pred cHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHH
Confidence 47788999999999998 8999999999999998 788999999999999999999888862 47899999999999
Q ss_pred HHHHHHHHHH---cCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh--hcCCccEEEEe
Q 014134 91 MENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SRGLLNLVAID 165 (430)
Q Consensus 91 ~~q~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~--~~~~~~~lViD 165 (430)
+.|++++++. +|.......+....... .... +.++|+||+++..+.... ...++++||+|
T Consensus 81 a~q~~~~~~~l~~~g~~v~~~~G~~~~~~~-------~~~~--------~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiD 145 (720)
T 2zj8_A 81 AEEKFQEFQDWEKIGLRVAMATGDYDSKDE-------WLGK--------YDIIIATAEKFDSLLRHGSSWIKDVKILVAD 145 (720)
T ss_dssp HHHHHHHTGGGGGGTCCEEEECSCSSCCCG-------GGGG--------CSEEEECHHHHHHHHHHTCTTGGGEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCEEEEecCCCCcccc-------ccCC--------CCEEEECHHHHHHHHHcChhhhhcCCEEEEE
Confidence 9999999864 35555555543322110 0011 223899999887775543 25678999999
Q ss_pred cCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEE------ec
Q 014134 166 EAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR------YK 239 (430)
Q Consensus 166 E~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 239 (430)
|+|.+.+++ ....+..+..... ++.|++++|||+++. ..+..++.. ..+........+...+. ..
T Consensus 146 E~H~l~~~~--r~~~~~~ll~~l~--~~~~ii~lSATl~n~--~~~~~~l~~---~~~~~~~rp~~l~~~~~~~~~~~~~ 216 (720)
T 2zj8_A 146 EIHLIGSRD--RGATLEVILAHML--GKAQIIGLSATIGNP--EELAEWLNA---ELIVSDWRPVKLRRGVFYQGFVTWE 216 (720)
T ss_dssp TGGGGGCTT--THHHHHHHHHHHB--TTBEEEEEECCCSCH--HHHHHHTTE---EEEECCCCSSEEEEEEEETTEEEET
T ss_pred CCcccCCCc--ccHHHHHHHHHhh--cCCeEEEEcCCcCCH--HHHHHHhCC---cccCCCCCCCcceEEEEeCCeeecc
Confidence 999998654 3333333322222 278899999999873 555666642 12222222222211111 11
Q ss_pred C----cchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcC---------------------------------C
Q 014134 240 D----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------------------------------G 282 (430)
Q Consensus 240 ~----~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~---------------------------------~ 282 (430)
+ ........+.+.+. +++++||||++++.++.++..|.+. .
T Consensus 217 ~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 294 (720)
T 2zj8_A 217 DGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIR 294 (720)
T ss_dssp TSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHT
T ss_pred ccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 1 02334455555554 4578999999999999999988753 1
Q ss_pred CcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEE----ec----CCCCHHHHHHHhccCCCCC-
Q 014134 283 ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN----IPKSMEAFYQESGRAGRDQ- 353 (430)
Q Consensus 283 ~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~----~~----~p~s~~~~~q~~GR~~R~g- 353 (430)
.++..+||++++.+|..+++.|++|.++|||||+++++|+|+|++++||+ |+ .|.|..+|.||+||+||.|
T Consensus 295 ~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~ 374 (720)
T 2zj8_A 295 GGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKY 374 (720)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTT
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCC
Confidence 24889999999999999999999999999999999999999999999998 66 5899999999999999998
Q ss_pred -CCceEEEeeCccchH
Q 014134 354 -LPSKSLLYYGMDDRR 368 (430)
Q Consensus 354 -~~g~~i~~~~~~~~~ 368 (430)
..|.|++++++.+..
T Consensus 375 ~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 375 DEVGEGIIVSTSDDPR 390 (720)
T ss_dssp CSEEEEEEECSSSCHH
T ss_pred CCCceEEEEecCccHH
Confidence 478899999888743
No 23
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=7.8e-45 Score=394.03 Aligned_cols=375 Identities=19% Similarity=0.211 Sum_probs=280.2
Q ss_pred CCccchHHHHHHHHHHHc-CCCEEEEcCCCChHHHHhHHhhhc--------------CCCeEEEEcchHHHHHHHHHHHH
Q 014134 35 GHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALA--------------KPGIVLVVSPLIALMENQVIGLK 99 (430)
Q Consensus 35 g~~~~~~~Q~~~~~~l~~-~~~~lv~a~tGsGKT~~~~~~~l~--------------~~~~~lil~Pt~~L~~q~~~~~~ 99 (430)
||.+|+++|++++|.++. ++|++++||||||||++|.+++++ .+.++||++|+++|++|+++.|.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 799999999999999875 679999999999999999999863 25689999999999999999887
Q ss_pred H----cCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh----hhcCCccEEEEecCcccc
Q 014134 100 E----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI----HSRGLLNLVAIDEAHCIS 171 (430)
Q Consensus 100 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~----~~~~~~~~lViDE~h~~~ 171 (430)
+ +|+.+...+++...... .. ... +++|+||+++..+... .....+++||+||+|.+.
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~-----~~----~~~------~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~ 220 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE-----EI----SAT------QIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLH 220 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT-----TG----GGC------SEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGG
T ss_pred HHHhhCCCEEEEEECCCCCCcc-----cc----CCC------CEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcC
Confidence 6 45666666554332110 00 112 2389999998777532 235679999999999886
Q ss_pred c-cCCCcHHHHHHHHHHH-hhCCCCcEEEEEcCCCchhHHHHHHHhCCCCC---eEEeccCCCCceEEEEEecC--cchh
Q 014134 172 S-WGHDFRPSYRKLSSLR-NYLPDVPILALTATAAPKVQKDVMESLCLQNP---LVLKSSFNRPNLFYEVRYKD--LLDD 244 (430)
Q Consensus 172 ~-~~~~~~~~~~~l~~~~-~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~ 244 (430)
+ +|...+..+.++.... ...++.|+|++|||+++. .++..|+..... ..+...+.+..+...+.... ....
T Consensus 221 d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~--~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~ 298 (1724)
T 4f92_B 221 DDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNY--EDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIK 298 (1724)
T ss_dssp STTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTH--HHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHH
T ss_pred CccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCH--HHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhh
Confidence 5 2322333333333322 334588999999999874 556777754321 23333433333333222211 1112
Q ss_pred HHHHH----HHHHHh-cCCceEEEEeCccccHHHHHHHHHcC-------------------------------------C
Q 014134 245 AYADL----CSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG-------------------------------------G 282 (430)
Q Consensus 245 ~~~~l----~~~l~~-~~~~~~iVf~~s~~~~~~l~~~l~~~-------------------------------------~ 282 (430)
....+ .+.+.+ ..++++||||+|++.|+.+++.|.+. .
T Consensus 299 ~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 378 (1724)
T 4f92_B 299 RFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLP 378 (1724)
T ss_dssp HHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhh
Confidence 22222 222222 24668999999999999988877531 1
Q ss_pred CcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEE----ec------CCCCHHHHHHHhccCCCC
Q 014134 283 ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN------IPKSMEAFYQESGRAGRD 352 (430)
Q Consensus 283 ~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~----~~------~p~s~~~~~q~~GR~~R~ 352 (430)
.++++|||+|++.+|..+++.|++|.++|||||+++++|||+|..++||. |+ .|.++.+|.||+|||||.
T Consensus 379 ~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~ 458 (1724)
T 4f92_B 379 YGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRP 458 (1724)
T ss_dssp TTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCT
T ss_pred cCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCC
Confidence 25789999999999999999999999999999999999999999999985 44 356899999999999998
Q ss_pred CC--CceEEEeeCccchHHHHHHHHhccCCCCCchhhhHHHHHHhhhhccccccceeecCcceeeeeccccccCCC
Q 014134 353 QL--PSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERWLITVKVLDVAGKRFSRVLGNRYLYHYVKTHAMPAN 426 (430)
Q Consensus 353 g~--~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 426 (430)
|. .|.++++...++...+..++....+.++.......+.++.+...+.+.+..+...|..++|.|.+....|.+
T Consensus 459 g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~ 534 (1724)
T 4f92_B 459 QYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTL 534 (1724)
T ss_dssp TTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTT
T ss_pred CCCCccEEEEEecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhh
Confidence 74 799999999999999999998888888888888889999988999999999999998888888777766654
No 24
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-44 Score=375.60 Aligned_cols=336 Identities=16% Similarity=0.114 Sum_probs=241.7
Q ss_pred CCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc---CCCeEEEEcchHHHHHH
Q 014134 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMEN 93 (430)
Q Consensus 17 ~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~---~~~~~lil~Pt~~L~~q 93 (430)
+...++++.+...+... +...|+++|.++++.+.++++++++||||||||++|.++++. ++.+++|++||++|+.|
T Consensus 164 ~~~~~l~~~~~~~~~~~-~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q 242 (1108)
T 3l9o_A 164 YDYTPIAEHKRVNEART-YPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQ 242 (1108)
T ss_dssp CCSSTTTTTCCCSCSSC-CSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred cccCCCChhhhHHHHHh-CCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHH
Confidence 44456666665566553 444699999999999999999999999999999999988864 58899999999999999
Q ss_pred HHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh--hcCCccEEEEecCcccc
Q 014134 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SRGLLNLVAIDEAHCIS 171 (430)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~--~~~~~~~lViDE~h~~~ 171 (430)
+++.+..+........+.... .... .++|+||+++.+++... .+..+++||+||||++.
T Consensus 243 ~~~~l~~~~~~VglltGd~~~-------------~~~~------~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~ 303 (1108)
T 3l9o_A 243 KYRELLAEFGDVGLMTGDITI-------------NPDA------GCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMR 303 (1108)
T ss_dssp HHHHHHHHTSSEEEECSSCBC-------------CCSC------SEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTT
T ss_pred HHHHHHHHhCCccEEeCcccc-------------CCCC------CEEEeChHHHHHHHHcCccccccCCEEEEhhhhhcc
Confidence 999999965555555544321 1122 23899999888876533 24568999999999998
Q ss_pred ccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhH-HHHHHHhCCCCCeEEeccCCCCceEEEEEecC---------
Q 014134 172 SWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQ-KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD--------- 240 (430)
Q Consensus 172 ~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 240 (430)
+++ +...+ ..+...++ +.|+++||||+++... ..+..........++........+...+....
T Consensus 304 d~~--rg~~~---e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd 378 (1108)
T 3l9o_A 304 DKE--RGVVW---EETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVD 378 (1108)
T ss_dssp SHH--HHHHH---HHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEE
T ss_pred ccc--hHHHH---HHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeec
Confidence 865 44333 33444444 7899999999887522 12222222222223322222222221111000
Q ss_pred ---c------------------------------------------chhHHHHHHHHHHhcCCceEEEEeCccccHHHHH
Q 014134 241 ---L------------------------------------------LDDAYADLCSVLKANGDTCAIVYCLERTTCDELS 275 (430)
Q Consensus 241 ---~------------------------------------------~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~ 275 (430)
. ....+..+...+...+..++||||++++.|+.++
T Consensus 379 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la 458 (1108)
T 3l9o_A 379 EKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELA 458 (1108)
T ss_dssp TTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHH
Confidence 0 0233444555555566779999999999999999
Q ss_pred HHHHcCCC---------------------------------------cceeecCCCCHHHHHHHHHHhhcCCceEEEEec
Q 014134 276 AYLSAGGI---------------------------------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (430)
Q Consensus 276 ~~l~~~~~---------------------------------------~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (430)
..|...++ ++..+||+|++.+|..+++.|++|.++|||||+
T Consensus 459 ~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~ 538 (1108)
T 3l9o_A 459 LKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATE 538 (1108)
T ss_dssp HHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEES
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECc
Confidence 98865322 268899999999999999999999999999999
Q ss_pred cccccccccCceEEEEecC--------CCCHHHHHHHhccCCCCC--CCceEEEeeCcc-chHHHHHHHHhc
Q 014134 317 AFGMGIDRKDVRLVCHFNI--------PKSMEAFYQESGRAGRDQ--LPSKSLLYYGMD-DRRRMEFILSKN 377 (430)
Q Consensus 317 ~~~~Gidi~~~~~vi~~~~--------p~s~~~~~q~~GR~~R~g--~~g~~i~~~~~~-~~~~~~~~~~~~ 377 (430)
++++|+|+|++++||+++. |.|+.+|+||+||+||.| ..|.|++++.+. +...+..++...
T Consensus 539 vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~ 610 (1108)
T 3l9o_A 539 TFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQ 610 (1108)
T ss_dssp CCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCC
T ss_pred HHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCC
Confidence 9999999999999997665 348889999999999999 678888888776 455566665543
No 25
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.3e-43 Score=370.36 Aligned_cols=331 Identities=17% Similarity=0.194 Sum_probs=244.2
Q ss_pred HHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc---CCCeEEEEcchHHHHHHHHHHHHH
Q 014134 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE 100 (430)
Q Consensus 24 ~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~---~~~~~lil~Pt~~L~~q~~~~~~~ 100 (430)
+.+.+.+...+|| +|+++|.++++.+++|+|++++||||||||++++.+++. .+.++||++||++|+.|+++.+..
T Consensus 65 ~~~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~ 143 (1104)
T 4ddu_A 65 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQK 143 (1104)
T ss_dssp HHHHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHH
Confidence 3444556666788 599999999999999999999999999999988877654 688999999999999999999999
Q ss_pred c---CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccc-----
Q 014134 101 K---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS----- 172 (430)
Q Consensus 101 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~----- 172 (430)
+ +.......++............+.....++ +|+||+++.++........+++||+||||.+..
T Consensus 144 l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~I--------lV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~ 215 (1104)
T 4ddu_A 144 LADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHI--------LVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNI 215 (1104)
T ss_dssp TSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSE--------EEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHH
T ss_pred hhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCE--------EEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccc
Confidence 5 345566666555433333444444433334 999999998777767788899999999987654
Q ss_pred ------cCCCcHHH-HHHHHHHHh------h---CCCCcEEEEEcCC-CchhHHHHHHHhCCCCCeEEeccCCCCceEEE
Q 014134 173 ------WGHDFRPS-YRKLSSLRN------Y---LPDVPILALTATA-APKVQKDVMESLCLQNPLVLKSSFNRPNLFYE 235 (430)
Q Consensus 173 ------~~~~~~~~-~~~l~~~~~------~---~~~~~~i~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (430)
+| |... +..+..... . .++.|+++||||+ +......+...... ..+........++...
T Consensus 216 Dr~L~~~g--f~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~--i~v~~~~~~~~~i~~~ 291 (1104)
T 4ddu_A 216 DTLLMMVG--IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN--FTVGRLVSVARNITHV 291 (1104)
T ss_dssp HHHHHTSS--CCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC--CCCCBCCCCCCCEEEE
T ss_pred hhhhHhcC--CCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee--EEeccCCCCcCCceeE
Confidence 45 3333 333322222 0 0467999999995 44433223332211 1111222333444444
Q ss_pred EEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcce-eecCCCCHHHHHHHHHHhhcCCceEEEE
Q 014134 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA-AYHAGLNDKARSSVLDDWISSRKQVVVA 314 (430)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~-~~hg~~~~~~r~~~~~~f~~g~~~vLv~ 314 (430)
+... .+...+.+++... ++++||||++++.++.+++.|++.|+.+. .+||. |.+ ++.|++|+.+||||
T Consensus 292 ~~~~----~k~~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVa 360 (1104)
T 4ddu_A 292 RISS----RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIG 360 (1104)
T ss_dssp EESC----CCHHHHHHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEE
T ss_pred EEec----CHHHHHHHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEE
Confidence 4333 3445566666663 47899999999999999999999999998 99992 555 99999999999999
Q ss_pred ----eccccccccccC-ceEEEEecCCC----------------------------------------------------
Q 014134 315 ----TVAFGMGIDRKD-VRLVCHFNIPK---------------------------------------------------- 337 (430)
Q Consensus 315 ----T~~~~~Gidi~~-~~~vi~~~~p~---------------------------------------------------- 337 (430)
|+++++|+|+|+ +++||++|+|.
T Consensus 361 tas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~ 440 (1104)
T 4ddu_A 361 VQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEK 440 (1104)
T ss_dssp ETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_pred ecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999 99999999998
Q ss_pred --------------------CHHHHHHHhccCCCCCCCc--eEEEeeCccchHHHHHHHHhcc
Q 014134 338 --------------------SMEAFYQESGRAGRDQLPS--KSLLYYGMDDRRRMEFILSKNQ 378 (430)
Q Consensus 338 --------------------s~~~~~q~~GR~~R~g~~g--~~i~~~~~~~~~~~~~~~~~~~ 378 (430)
++.+|+||+||+||.|..| .++.++..+|...++.+.+.+.
T Consensus 441 i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 441 VKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp HHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred HhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 7889999999999965433 4455555577788888877764
No 26
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.6e-43 Score=353.52 Aligned_cols=320 Identities=18% Similarity=0.236 Sum_probs=182.8
Q ss_pred CCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC--------CCeEEEEcchHHHHHHHHHHHHHc----C
Q 014134 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK----G 102 (430)
Q Consensus 35 g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~--------~~~~lil~Pt~~L~~q~~~~~~~~----~ 102 (430)
+..+|+|+|.++++.+++++++++++|||+|||++|+++++.. +.++||++|+++|+.|+.+.+..+ +
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 4457999999999999999999999999999999999988643 788999999999999999999886 5
Q ss_pred cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh---hcCCccEEEEecCccccccCCCcHH
Q 014134 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH---SRGLLNLVAIDEAHCISSWGHDFRP 179 (430)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~---~~~~~~~lViDE~h~~~~~~~~~~~ 179 (430)
.......++............ . .+ ++|+||+++....... ....+++||+||||++.+++. +..
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~----~--~~------i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~ 150 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIE----D--SD------IIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNV 150 (556)
T ss_dssp CCEEECCCC-----CHHHHHH----H--CS------EEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHH
T ss_pred ceEEEEeCCCCcchhHHHhhC----C--CC------EEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch-HHH
Confidence 666555554432221111110 1 12 2999999888876542 456689999999999987663 333
Q ss_pred HHHHHHHHHh--hCCCCcEEEEEcCCCchh----------HHHHHHHhCCCCCeEEecc---------CCCCceEEEEEe
Q 014134 180 SYRKLSSLRN--YLPDVPILALTATAAPKV----------QKDVMESLCLQNPLVLKSS---------FNRPNLFYEVRY 238 (430)
Q Consensus 180 ~~~~l~~~~~--~~~~~~~i~~SAT~~~~~----------~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 238 (430)
.+..+..... ..+..++++||||++... ...+...+... .+.... ...+........
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (556)
T 4a2p_A 151 LMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ--AISTVRENIQELQRFMNKPEIDVRLVK 228 (556)
T ss_dssp HHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCS--EEECCCTTHHHHHHHTCCCCEEEEECC
T ss_pred HHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCe--EecchhcchHHHHhcCCCCceEEEEcC
Confidence 3222211110 135688999999996521 11122222211 000000 001110000000
Q ss_pred --------------------------------------------------------------------------------
Q 014134 239 -------------------------------------------------------------------------------- 238 (430)
Q Consensus 239 -------------------------------------------------------------------------------- 238 (430)
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 308 (556)
T 4a2p_A 229 RRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHL 308 (556)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHH
T ss_pred CCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence
Q ss_pred ----------------------------------------------------------cCcchhHHHHHHHHHHh----c
Q 014134 239 ----------------------------------------------------------KDLLDDAYADLCSVLKA----N 256 (430)
Q Consensus 239 ----------------------------------------------------------~~~~~~~~~~l~~~l~~----~ 256 (430)
......+...+.+++.+ .
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~ 388 (556)
T 4a2p_A 309 RKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYN 388 (556)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCC
Confidence 00013355556666643 4
Q ss_pred CCceEEEEeCccccHHHHHHHHHcC------------CCcceeecCCCCHHHHHHHHHHhhc-CCceEEEEecccccccc
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFGMGID 323 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~------------~~~~~~~hg~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~Gid 323 (430)
++.++||||+++..++.+++.|.+. |.+...+||+|++.+|..+++.|++ |+++|||||+++++|+|
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiD 468 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGID 468 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-------
T ss_pred CCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCC
Confidence 6789999999999999999999875 4555677888999999999999999 99999999999999999
Q ss_pred ccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHH
Q 014134 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371 (430)
Q Consensus 324 i~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~ 371 (430)
+|++++||+||+|+|+..|+||+|| ||. +.|.+++++...+.....
T Consensus 469 ip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~ 514 (556)
T 4a2p_A 469 IVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVENE 514 (556)
T ss_dssp ----CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHHHHH
T ss_pred chhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHHHH
Confidence 9999999999999999999999999 998 889999999887664433
No 27
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-42 Score=362.44 Aligned_cols=318 Identities=18% Similarity=0.182 Sum_probs=236.7
Q ss_pred HHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh---cCCCeEEEEcchHHHHHHHHHHHHHcCcceeE
Q 014134 31 RWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (430)
Q Consensus 31 ~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 107 (430)
...++|. |+++|.++++.+.++++++++||||+|||++|.++++ .++.+++|++|+++|++|+++++.........
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vgl 158 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGL 158 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEE
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEE
Confidence 3347886 9999999999999999999999999999999988776 46889999999999999999999885445555
Q ss_pred eCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh--hhcCCccEEEEecCccccccCCCcHHHHHHHH
Q 014134 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (430)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~--~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~ 185 (430)
.++..... ... +++|+||+.+..+... .....+++||+||+|.+.+++. .. .+.
T Consensus 159 ltGd~~~~-------------~~~------~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~r--g~---~~e 214 (1010)
T 2xgj_A 159 MTGDITIN-------------PDA------GCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKER--GV---VWE 214 (1010)
T ss_dssp ECSSCEEC-------------TTC------SEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTT--HH---HHH
T ss_pred EeCCCccC-------------CCC------CEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccch--hH---HHH
Confidence 44433211 112 2389999988877543 3456789999999999988653 32 233
Q ss_pred HHHhhCC-CCcEEEEEcCCCchhHHHHHHHhC---CCCCeEEeccCCCCceEEEEEecC-----------c---------
Q 014134 186 SLRNYLP-DVPILALTATAAPKVQKDVMESLC---LQNPLVLKSSFNRPNLFYEVRYKD-----------L--------- 241 (430)
Q Consensus 186 ~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-----------~--------- 241 (430)
.+...++ +.+++++|||+++.. .+..++. .....++........+...+.... .
T Consensus 215 ~il~~l~~~~~il~LSATi~n~~--e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (1010)
T 2xgj_A 215 ETIILLPDKVRYVFLSATIPNAM--EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQK 292 (1010)
T ss_dssp HHHHHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHH
T ss_pred HHHHhcCCCCeEEEEcCCCCCHH--HHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHH
Confidence 4444444 789999999998753 2233322 122222222222222222111100 0
Q ss_pred --------------------------c--------hhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCC----
Q 014134 242 --------------------------L--------DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI---- 283 (430)
Q Consensus 242 --------------------------~--------~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~---- 283 (430)
. ...+..+...+...+..++||||++++.|+.+++.|...++
T Consensus 293 ~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~ 372 (1010)
T 2xgj_A 293 AMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDD 372 (1010)
T ss_dssp HHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHH
T ss_pred HHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChH
Confidence 0 22234455555555666899999999999999999876443
Q ss_pred -----------------------------------cceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCce
Q 014134 284 -----------------------------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328 (430)
Q Consensus 284 -----------------------------------~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~ 328 (430)
++..+||+|++.+|..+++.|++|.++|||||+++++|+|+|+++
T Consensus 373 e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~ 452 (1010)
T 2xgj_A 373 EKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKT 452 (1010)
T ss_dssp HHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSE
T ss_pred HHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCce
Confidence 267899999999999999999999999999999999999999999
Q ss_pred EEEE----ecC----CCCHHHHHHHhccCCCCCC--CceEEEeeCcc-chHHHHHHHH
Q 014134 329 LVCH----FNI----PKSMEAFYQESGRAGRDQL--PSKSLLYYGMD-DRRRMEFILS 375 (430)
Q Consensus 329 ~vi~----~~~----p~s~~~~~q~~GR~~R~g~--~g~~i~~~~~~-~~~~~~~~~~ 375 (430)
+||+ ||. |.|+.+|.||+||+||.|. .|.|++++++. +...+..++.
T Consensus 453 vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~ 510 (1010)
T 2xgj_A 453 VVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVK 510 (1010)
T ss_dssp EEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHS
T ss_pred EEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHh
Confidence 9999 998 8999999999999999997 59999999876 5566666654
No 28
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.2e-43 Score=363.15 Aligned_cols=329 Identities=19% Similarity=0.246 Sum_probs=200.4
Q ss_pred HHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC--------CCeEEEEcchHHHHHHHHHHHH
Q 014134 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLK 99 (430)
Q Consensus 28 ~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~--------~~~~lil~Pt~~L~~q~~~~~~ 99 (430)
..|.. +|+.+|+++|.++++.+++++++++++|||+|||++|.+++++. +.++||++||++|+.|+.+.+.
T Consensus 4 ~~l~~-~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 4 SDTNL-YSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ---CT-TC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred Ccccc-cCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 34555 89999999999999999999999999999999999999888632 2789999999999999999998
Q ss_pred Hc----CcceeEeCCCchHHHH-HHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh---hcCCccEEEEecCcccc
Q 014134 100 EK----GIAGEFLSSTQTMQVK-TKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH---SRGLLNLVAIDEAHCIS 171 (430)
Q Consensus 100 ~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~---~~~~~~~lViDE~h~~~ 171 (430)
++ +.......++...... ..... . .++ +|+||+++.+..... ....+++||+||||++.
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~-----~--~~I------iv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~ 149 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIVE-----N--NDI------IILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTS 149 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHHH-----T--CSE------EEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCS
T ss_pred HHhccCCceEEEEeCCccccccHHHhcc-----C--CCE------EEECHHHHHHHHhcCcccccccccEEEEeCCCccc
Confidence 86 4555555544322111 11111 1 222 899999888876543 45668999999999987
Q ss_pred ccCCCcHHHHHHHHHH-Hhh--CCCCcEEEEEcCCC-------chhHHHHHHHhCCCCCeEEecc---------------
Q 014134 172 SWGHDFRPSYRKLSSL-RNY--LPDVPILALTATAA-------PKVQKDVMESLCLQNPLVLKSS--------------- 226 (430)
Q Consensus 172 ~~~~~~~~~~~~l~~~-~~~--~~~~~~i~~SAT~~-------~~~~~~~~~~~~~~~~~~~~~~--------------- 226 (430)
+.. .+...+..+... ... .+..++++||||+. ......+.......+...+...
T Consensus 150 ~~~-~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~ 228 (696)
T 2ykg_A 150 KQH-PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQ 228 (696)
T ss_dssp TTC-HHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCE
T ss_pred Ccc-cHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCc
Confidence 543 233332221111 111 24678999999998 2223333322211111110000
Q ss_pred ------CCC-Cce---------------------------------------------------EEEEE-----------
Q 014134 227 ------FNR-PNL---------------------------------------------------FYEVR----------- 237 (430)
Q Consensus 227 ------~~~-~~~---------------------------------------------------~~~~~----------- 237 (430)
... ... .....
T Consensus 229 ~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (696)
T 2ykg_A 229 KFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKA 308 (696)
T ss_dssp EEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHH
T ss_pred eeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHH
Confidence 000 000 00000
Q ss_pred -----------------------------------------------------------------ecCcchhHHHHHHHH
Q 014134 238 -----------------------------------------------------------------YKDLLDDAYADLCSV 252 (430)
Q Consensus 238 -----------------------------------------------------------------~~~~~~~~~~~l~~~ 252 (430)
.......+...+.++
T Consensus 309 l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~l 388 (696)
T 2ykg_A 309 LFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFI 388 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 000123566677777
Q ss_pred HHhc----CCceEEEEeCccccHHHHHHHHHcCC----Ccceee--------cCCCCHHHHHHHHHHhhc-CCceEEEEe
Q 014134 253 LKAN----GDTCAIVYCLERTTCDELSAYLSAGG----ISCAAY--------HAGLNDKARSSVLDDWIS-SRKQVVVAT 315 (430)
Q Consensus 253 l~~~----~~~~~iVf~~s~~~~~~l~~~l~~~~----~~~~~~--------hg~~~~~~r~~~~~~f~~-g~~~vLv~T 315 (430)
+... +++++||||+++..++.+++.|++.+ +.+..+ ||+|++++|..+++.|++ |+.+|||||
T Consensus 389 l~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT 468 (696)
T 2ykg_A 389 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIAT 468 (696)
T ss_dssp HHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEE
T ss_pred HHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEe
Confidence 7654 56799999999999999999999987 778777 559999999999999998 999999999
Q ss_pred ccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHH
Q 014134 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (430)
Q Consensus 316 ~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~ 373 (430)
+++++|+|+|++++||+||+|+|+..|+||+|| ||. +.|.++++++..+....+.+
T Consensus 469 ~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 469 SVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp ESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred chhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 999999999999999999999999999999999 998 78999999988776444433
No 29
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-43 Score=357.36 Aligned_cols=314 Identities=19% Similarity=0.183 Sum_probs=233.3
Q ss_pred HHHHHHHHhcCCccchHHHHHHHHHHHcC------CCEEEEcCCCChHHHHhHHhhhc---CCCeEEEEcchHHHHHHHH
Q 014134 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQV 95 (430)
Q Consensus 25 ~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~------~~~lv~a~tGsGKT~~~~~~~l~---~~~~~lil~Pt~~L~~q~~ 95 (430)
.+.+.+.+.+|| +||++|.++++.+.++ .+++++||||||||++|+++++. .+.+++|++||++|+.|++
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~ 434 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHY 434 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHH
Confidence 455555555999 8999999999998865 58999999999999999998875 4789999999999999999
Q ss_pred HHHHHc----CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCcccc
Q 014134 96 IGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (430)
Q Consensus 96 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~ 171 (430)
+.+.++ +.......+.............+.....++ +|+||+.+. ....+.+++++|+||+|++.
T Consensus 435 ~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~I--------vVgT~~ll~---~~~~~~~l~lVVIDEaHr~g 503 (780)
T 1gm5_A 435 RRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDV--------VIGTHALIQ---EDVHFKNLGLVIIDEQHRFG 503 (780)
T ss_dssp HHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCE--------EEECTTHHH---HCCCCSCCCEEEEESCCCC-
T ss_pred HHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCE--------EEECHHHHh---hhhhccCCceEEecccchhh
Confidence 998874 567777777776666555666665544444 888988553 34556779999999999963
Q ss_pred ccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEecc-CCCCceEEEEEecCcchhHHHHHH
Q 014134 172 SWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPNLFYEVRYKDLLDDAYADLC 250 (430)
Q Consensus 172 ~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ 250 (430)
. .. ...+....++.++++||||+.+.... ....+..+...+... .....+...+.... ....+.
T Consensus 504 ~---~q------r~~l~~~~~~~~vL~mSATp~p~tl~--~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~----~~~~l~ 568 (780)
T 1gm5_A 504 V---KQ------REALMNKGKMVDTLVMSATPIPRSMA--LAFYGDLDVTVIDEMPPGRKEVQTMLVPMD----RVNEVY 568 (780)
T ss_dssp -------------CCCCSSSSCCCEEEEESSCCCHHHH--HHHTCCSSCEEECCCCSSCCCCEECCCCSS----THHHHH
T ss_pred H---HH------HHHHHHhCCCCCEEEEeCCCCHHHHH--HHHhCCcceeeeeccCCCCcceEEEEeccc----hHHHHH
Confidence 2 11 11122333468899999999887654 223333333333221 12222222222221 223333
Q ss_pred HHHHh--cCCceEEEEeCcc--------ccHHHHHHHHHc---CCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc
Q 014134 251 SVLKA--NGDTCAIVYCLER--------TTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (430)
Q Consensus 251 ~~l~~--~~~~~~iVf~~s~--------~~~~~l~~~l~~---~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~ 317 (430)
+.+.+ ..+.+++|||++. ..++.+++.|.+ .+..+..+||+|++.+|..+++.|++|+.+|||||++
T Consensus 569 ~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~v 648 (780)
T 1gm5_A 569 EFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTV 648 (780)
T ss_dssp HHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSC
T ss_pred HHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCC
Confidence 33332 2467899999966 457888888887 4678999999999999999999999999999999999
Q ss_pred ccccccccCceEEEEecCCC-CHHHHHHHhccCCCCCCCceEEEeeCcc
Q 014134 318 FGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (430)
Q Consensus 318 ~~~Gidi~~~~~vi~~~~p~-s~~~~~q~~GR~~R~g~~g~~i~~~~~~ 365 (430)
+++|+|+|++++||+++.|. +.+.|.||+||+||.|..|.|++++.+.
T Consensus 649 ie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~ 697 (780)
T 1gm5_A 649 IEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDV 697 (780)
T ss_dssp CCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSC
T ss_pred CCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCC
Confidence 99999999999999999996 7899999999999999999999999843
No 30
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=7.7e-43 Score=348.42 Aligned_cols=319 Identities=19% Similarity=0.220 Sum_probs=208.1
Q ss_pred cchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC--------CCeEEEEcchHHHHHHHHHHHHHc----Ccce
Q 014134 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK----GIAG 105 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~--------~~~~lil~Pt~~L~~q~~~~~~~~----~~~~ 105 (430)
+|+++|.++++.+++++++++++|||+|||++|+++++.. +.++||++||++|+.|+.+.+..+ +...
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 5999999999999999999999999999999999988642 778999999999999999999886 6666
Q ss_pred eEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh---hcCCccEEEEecCccccccCCCcHHHHH
Q 014134 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH---SRGLLNLVAIDEAHCISSWGHDFRPSYR 182 (430)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~---~~~~~~~lViDE~h~~~~~~~~~~~~~~ 182 (430)
....++............ . .+ ++|+||+++....... ....+++||+||||++.+.+. +...+.
T Consensus 84 ~~~~g~~~~~~~~~~~~~----~--~~------i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~ 150 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIE----D--ND------IIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMF 150 (555)
T ss_dssp EEECTTTGGGSCHHHHHH----H--CS------EEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHH
T ss_pred EEEcCCCcchhhHHHHhc----C--CC------EEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch-HHHHHH
Confidence 666655533222111111 1 22 2899999888876542 455689999999999987552 333332
Q ss_pred HHHHHH-hh--CCCCcEEEEEcCCCchh-------HH---HHHHHhCCCCCeEEecc---------CCCCceEEEEEec-
Q 014134 183 KLSSLR-NY--LPDVPILALTATAAPKV-------QK---DVMESLCLQNPLVLKSS---------FNRPNLFYEVRYK- 239 (430)
Q Consensus 183 ~l~~~~-~~--~~~~~~i~~SAT~~~~~-------~~---~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~- 239 (430)
.+.... .. .+..+++++|||+.... .. .+...+.. ..+.... ...+.........
T Consensus 151 ~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 228 (555)
T 3tbk_A 151 RYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDA--SVIATVRDNVAELEQVVYKPQKISRKVASR 228 (555)
T ss_dssp HHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTC--SEEECCCSCHHHHHTTCCCCCEEEEECCCC
T ss_pred HHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCC--eeeeccccCHHHHHhhcCCCceEEEEecCc
Confidence 221111 10 14678999999997632 11 22222221 1111000 0111111110000
Q ss_pred --------------------------------------------------------------------------------
Q 014134 240 -------------------------------------------------------------------------------- 239 (430)
Q Consensus 240 -------------------------------------------------------------------------------- 239 (430)
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (555)
T 3tbk_A 229 TSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLR 308 (555)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ----------------------------------------------------------CcchhHHHHHHHHHHh----cC
Q 014134 240 ----------------------------------------------------------DLLDDAYADLCSVLKA----NG 257 (430)
Q Consensus 240 ----------------------------------------------------------~~~~~~~~~l~~~l~~----~~ 257 (430)
.....+...+.+++.. .+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 388 (555)
T 3tbk_A 309 KYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKP 388 (555)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCC
Confidence 0012355555555544 35
Q ss_pred CceEEEEeCccccHHHHHHHHHcCC------------CcceeecCCCCHHHHHHHHHHhhc-CCceEEEEeccccccccc
Q 014134 258 DTCAIVYCLERTTCDELSAYLSAGG------------ISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFGMGIDR 324 (430)
Q Consensus 258 ~~~~iVf~~s~~~~~~l~~~l~~~~------------~~~~~~hg~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~Gidi 324 (430)
+.++||||+++..++.+++.|.+.+ .+...+||+|++.+|..+++.|++ |+++|||||+++++|+|+
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDl 468 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDI 468 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEET
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCcc
Confidence 6899999999999999999998763 344556779999999999999999 999999999999999999
Q ss_pred cCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHH
Q 014134 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (430)
Q Consensus 325 ~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~ 373 (430)
|++++||+||+|+|+..|+||+|| ||. +.|.+++++++.+......+
T Consensus 469 p~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 469 AECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp TSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred ccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999999999999999999999 998 89999999998876555444
No 31
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.2e-42 Score=335.52 Aligned_cols=313 Identities=19% Similarity=0.220 Sum_probs=231.6
Q ss_pred cchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc----CCCeEEEEcchHHHHHHHHHHHHHc-Cc---ceeEeC
Q 014134 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEK-GI---AGEFLS 109 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~----~~~~~lil~Pt~~L~~q~~~~~~~~-~~---~~~~~~ 109 (430)
+|+|+|.++++.++++ ++++.+|||+|||++++.+++. .+.++||++|+++|+.||.+++.++ +. ......
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 87 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALT 87 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEEC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEee
Confidence 5999999999999999 9999999999999999888764 4789999999999999999999986 44 455555
Q ss_pred CCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHH--hhhcCCccEEEEecCccccccCCCcHHHHHHHHHH
Q 014134 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (430)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~--~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~ 187 (430)
+............. . .++|+||+.+..... ......+++||+||||++.+... +.. .+..+
T Consensus 88 g~~~~~~~~~~~~~-------~------~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~-~~~---~~~~~ 150 (494)
T 1wp9_A 88 GEKSPEERSKAWAR-------A------KVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYA-YVF---IAREY 150 (494)
T ss_dssp SCSCHHHHHHHHHH-------C------SEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCH-HHH---HHHHH
T ss_pred CCcchhhhhhhccC-------C------CEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCc-HHH---HHHHH
Confidence 55443332222211 1 228999998877655 33466789999999999875321 222 22333
Q ss_pred HhhCCCCcEEEEEcCCCch--hHHHHHHHhCCCCCeEEeccC-------CCCceEEEEEe--------------------
Q 014134 188 RNYLPDVPILALTATAAPK--VQKDVMESLCLQNPLVLKSSF-------NRPNLFYEVRY-------------------- 238 (430)
Q Consensus 188 ~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-------------------- 238 (430)
....+..++++||||+.+. ....+...+....+....... ...........
T Consensus 151 ~~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (494)
T 1wp9_A 151 KRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDAL 230 (494)
T ss_dssp HHHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHH
Confidence 4445678899999999843 233344444332211111000 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q 014134 239 -------------------------------------------------------------------------------- 238 (430)
Q Consensus 239 -------------------------------------------------------------------------------- 238 (430)
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 310 (494)
T 1wp9_A 231 KPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKA 310 (494)
T ss_dssp HHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhcc
Confidence
Q ss_pred ---------------------------cCcchhHHHHHHHHHHh----cCCceEEEEeCccccHHHHHHHHHcCCCccee
Q 014134 239 ---------------------------KDLLDDAYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSAGGISCAA 287 (430)
Q Consensus 239 ---------------------------~~~~~~~~~~l~~~l~~----~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~ 287 (430)
......+...+.+++.. .++.++||||+++..++.+++.|.+.|+.+..
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~ 390 (494)
T 1wp9_A 311 GSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKR 390 (494)
T ss_dssp TCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEE
Confidence 00123355666666665 46889999999999999999999999999999
Q ss_pred ecC--------CCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEE
Q 014134 288 YHA--------GLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 359 (430)
Q Consensus 288 ~hg--------~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i 359 (430)
+|| +++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+|+..|+||+||+||.|+ |.++
T Consensus 391 ~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~ 469 (494)
T 1wp9_A 391 FVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVI 469 (494)
T ss_dssp ECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEE
T ss_pred EeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEE
Confidence 999 9999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred EeeCccchHH
Q 014134 360 LYYGMDDRRR 369 (430)
Q Consensus 360 ~~~~~~~~~~ 369 (430)
.++.+.+.+.
T Consensus 470 ~l~~~~t~ee 479 (494)
T 1wp9_A 470 ILMAKGTRDE 479 (494)
T ss_dssp EEEETTSHHH
T ss_pred EEEecCCHHH
Confidence 9998876543
No 32
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=5.6e-42 Score=354.00 Aligned_cols=321 Identities=18% Similarity=0.231 Sum_probs=189.7
Q ss_pred hcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC--------CCeEEEEcchHHHHHHHHHHHHHc---
Q 014134 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK--- 101 (430)
Q Consensus 33 ~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~--------~~~~lil~Pt~~L~~q~~~~~~~~--- 101 (430)
.+|+.+|+++|.++++.+++++++++++|||+|||++|+++++.. +.++||++|+++|+.|+.+.++.+
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 468899999999999999999999999999999999999988643 788999999999999999999886
Q ss_pred -CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh---hcCCccEEEEecCccccccCCCc
Q 014134 102 -GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH---SRGLLNLVAIDEAHCISSWGHDF 177 (430)
Q Consensus 102 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~---~~~~~~~lViDE~h~~~~~~~~~ 177 (430)
+.......++........... .. .+ ++|+||+++.+..... ....+++||+||||++.+.+. +
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~----~~--~~------Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~-~ 389 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVI----ED--SD------IIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-Y 389 (797)
T ss_dssp GTCCEEEECCC-----CHHHHH----HT--CS------EEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH-H
T ss_pred CCceEEEEeCCcchhhhHHHhh----CC--CC------EEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc-H
Confidence 666666665553322111111 01 22 2899999888776532 345689999999999887542 3
Q ss_pred HHHHHHHHHHHh--hCCCCcEEEEEcCCCch----------hHHHHHHHhCCCCCeEEecc---------CCCCceEEEE
Q 014134 178 RPSYRKLSSLRN--YLPDVPILALTATAAPK----------VQKDVMESLCLQNPLVLKSS---------FNRPNLFYEV 236 (430)
Q Consensus 178 ~~~~~~l~~~~~--~~~~~~~i~~SAT~~~~----------~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 236 (430)
...+..+..... ..+..+++++|||+... ....+...+... .+.... ...+......
T Consensus 390 ~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~--~i~~~~~~~~~l~~~~~~~~~~~~~ 467 (797)
T 4a2q_A 390 NVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ--AISTVRENIQELQRFMNKPEIDVRL 467 (797)
T ss_dssp HHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS--EEECCCTTHHHHHHHSCCCCCEEEE
T ss_pred HHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCc--EEecccccHHHHHHhcCCCceEEEe
Confidence 333322211111 14567899999999642 111222222110 000000 0000000000
Q ss_pred Ee------------------------------------------------------------------------------
Q 014134 237 RY------------------------------------------------------------------------------ 238 (430)
Q Consensus 237 ~~------------------------------------------------------------------------------ 238 (430)
..
T Consensus 468 ~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 547 (797)
T 4a2q_A 468 VKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTE 547 (797)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 00
Q ss_pred ------------------------------------------------------------cCcchhHHHHHHHHHHh---
Q 014134 239 ------------------------------------------------------------KDLLDDAYADLCSVLKA--- 255 (430)
Q Consensus 239 ------------------------------------------------------------~~~~~~~~~~l~~~l~~--- 255 (430)
......|+..+.+++..
T Consensus 548 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~ 627 (797)
T 4a2q_A 548 HLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYR 627 (797)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhc
Confidence 00012355556666654
Q ss_pred -cCCceEEEEeCccccHHHHHHHHHcC------------CCcceeecCCCCHHHHHHHHHHhhc-CCceEEEEecccccc
Q 014134 256 -NGDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFGMG 321 (430)
Q Consensus 256 -~~~~~~iVf~~s~~~~~~l~~~l~~~------------~~~~~~~hg~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~G 321 (430)
.++.++||||+++..++.+++.|++. |.+...+||+|++.+|..+++.|++ |+++|||||+++++|
T Consensus 628 ~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~G 707 (797)
T 4a2q_A 628 YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEG 707 (797)
T ss_dssp HCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC----
T ss_pred cCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcC
Confidence 46789999999999999999999873 4566678999999999999999999 999999999999999
Q ss_pred ccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHH
Q 014134 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (430)
Q Consensus 322 idi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~ 370 (430)
+|+|++++||+||+|+|+..|+||+|| ||. +.|.++++++..+....
T Consensus 708 IDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee~ 754 (797)
T 4a2q_A 708 IDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 754 (797)
T ss_dssp ---CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHHHH
T ss_pred CCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHHH
Confidence 999999999999999999999999999 999 89999999988765433
No 33
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=7.7e-41 Score=353.50 Aligned_cols=322 Identities=19% Similarity=0.191 Sum_probs=241.5
Q ss_pred CCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHc----CC--CEEEEcCCCChHHHHhHHhhh---cCCCeEEEEcchH
Q 014134 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS----GR--DCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLI 88 (430)
Q Consensus 18 ~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~----~~--~~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt~ 88 (430)
..++..+...+.+...|||. +||+|.++++.+++ ++ ++++++|||+|||.+++.+++ ..+.+++|++||+
T Consensus 584 ~~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~ 662 (1151)
T 2eyq_A 584 FAFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT 662 (1151)
T ss_dssp CCCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred CCCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechH
Confidence 34566677778888779997 79999999999886 55 899999999999999886664 5678999999999
Q ss_pred HHHHHHHHHHHHc----CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEE
Q 014134 89 ALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAI 164 (430)
Q Consensus 89 ~L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lVi 164 (430)
+|+.|+++.+.+. +.......+.............+.....++ +|+||..+. ....+.++++||+
T Consensus 663 ~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dI--------vV~T~~ll~---~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 663 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDI--------LIGTHKLLQ---SDVKFKDLGLLIV 731 (1151)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSE--------EEECTHHHH---SCCCCSSEEEEEE
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCE--------EEECHHHHh---CCccccccceEEE
Confidence 9999999999863 345555555555555555555555444344 888887543 3345677899999
Q ss_pred ecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCC-CCceEEEEEecCcch
Q 014134 165 DEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVRYKDLLD 243 (430)
Q Consensus 165 DE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 243 (430)
||+|++.. ... . .+....++.++++||||+.+....... ....+...+..... +..+...+.... ..
T Consensus 732 DEaH~~g~---~~~---~---~l~~l~~~~~vl~lSATp~p~~l~~~~--~~~~~~~~i~~~~~~r~~i~~~~~~~~-~~ 799 (1151)
T 2eyq_A 732 DEEHRFGV---RHK---E---RIKAMRANVDILTLTATPIPRTLNMAM--SGMRDLSIIATPPARRLAVKTFVREYD-SM 799 (1151)
T ss_dssp ESGGGSCH---HHH---H---HHHHHHTTSEEEEEESSCCCHHHHHHH--TTTSEEEECCCCCCBCBCEEEEEEECC-HH
T ss_pred echHhcCh---HHH---H---HHHHhcCCCCEEEEcCCCChhhHHHHH--hcCCCceEEecCCCCccccEEEEecCC-HH
Confidence 99999532 111 2 222333578899999999887665333 23333333322221 222233222222 12
Q ss_pred hHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcC--CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecccccc
Q 014134 244 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (430)
Q Consensus 244 ~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~G 321 (430)
.....+...+. .+++++|||++++.++.+++.|++. +..+..+||+|++.+|+.+++.|++|+.+|||||+++++|
T Consensus 800 ~i~~~il~~l~--~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~G 877 (1151)
T 2eyq_A 800 VVREAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETG 877 (1151)
T ss_dssp HHHHHHHHHHT--TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGG
T ss_pred HHHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceee
Confidence 22333333332 4679999999999999999999887 7889999999999999999999999999999999999999
Q ss_pred ccccCceEEEEecC-CCCHHHHHHHhccCCCCCCCceEEEeeCcc
Q 014134 322 IDRKDVRLVCHFNI-PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (430)
Q Consensus 322 idi~~~~~vi~~~~-p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~ 365 (430)
+|+|++++||+++. +.+..+|.||+||+||.|+.|.|++++.++
T Consensus 878 iDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 878 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp SCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred ecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 99999999999988 579999999999999999999999998765
No 34
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=9.1e-41 Score=348.03 Aligned_cols=326 Identities=16% Similarity=0.199 Sum_probs=237.5
Q ss_pred HHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh---cCCCeEEEEcchHHHHHHHHHHHHH
Q 014134 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE 100 (430)
Q Consensus 24 ~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt~~L~~q~~~~~~~ 100 (430)
.++...+...|+|. |+++|.++++.+++|++++++||||+|||++|.+++. ..+.+++|++|+++|+.|+++.+.+
T Consensus 26 ~~l~~~~~~~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 26 DELIPNPARSWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKE 104 (997)
T ss_dssp HHHCSSCSCCCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHT
T ss_pred hhhhHhHHHhCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHH
Confidence 44444455557886 8999999999999999999999999999999887765 4678899999999999999999998
Q ss_pred c--CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh--hcCCccEEEEecCccccccCCC
Q 014134 101 K--GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SRGLLNLVAIDEAHCISSWGHD 176 (430)
Q Consensus 101 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~--~~~~~~~lViDE~h~~~~~~~~ 176 (430)
+ +.......+.... ....+ ++|+||+++..+.... ....+++||+||||++.+++..
T Consensus 105 ~~~~~~v~~l~G~~~~-------------~~~~~------IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g 165 (997)
T 4a4z_A 105 TFDDVNIGLITGDVQI-------------NPDAN------CLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRG 165 (997)
T ss_dssp TC--CCEEEECSSCEE-------------CTTSS------EEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTT
T ss_pred HcCCCeEEEEeCCCcc-------------CCCCC------EEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchH
Confidence 6 3355555443321 11122 2899999887765433 3567899999999999987643
Q ss_pred cHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCC---CCCeEEeccCCCCceEEEEEe--------------
Q 014134 177 FRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCL---QNPLVLKSSFNRPNLFYEVRY-------------- 238 (430)
Q Consensus 177 ~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------------- 238 (430)
. .+..+...++ +.+++++|||+++.. .+..++.. ....++........+...+..
T Consensus 166 --~---~~e~ii~~l~~~v~iIlLSAT~~n~~--ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~ 238 (997)
T 4a4z_A 166 --V---VWEEVIIMLPQHVKFILLSATVPNTY--EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEF 238 (997)
T ss_dssp --C---CHHHHHHHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCB
T ss_pred --H---HHHHHHHhcccCCCEEEEcCCCCChH--HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhh
Confidence 2 2333444444 789999999998753 33444431 222233322222222211110
Q ss_pred ------------------------------------------------------------------------------cC
Q 014134 239 ------------------------------------------------------------------------------KD 240 (430)
Q Consensus 239 ------------------------------------------------------------------------------~~ 240 (430)
..
T Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (997)
T 4a4z_A 239 LEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDG 318 (997)
T ss_dssp CHHHHHHHHHHHC-----------------------------------------------------------------CC
T ss_pred hHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00
Q ss_pred cchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCC-------------------------------------
Q 014134 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI------------------------------------- 283 (430)
Q Consensus 241 ~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~------------------------------------- 283 (430)
.....+..+...+...+..++||||++++.|+.++..|.+.++
T Consensus 319 ~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l 398 (997)
T 4a4z_A 319 PSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLL 398 (997)
T ss_dssp CCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHh
Confidence 1223466777778777778999999999999999999977655
Q ss_pred --cceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCC---------CCHHHHHHHhccCCCC
Q 014134 284 --SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP---------KSMEAFYQESGRAGRD 352 (430)
Q Consensus 284 --~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p---------~s~~~~~q~~GR~~R~ 352 (430)
++..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++|+ ++.| .|+.+|+||+||+||.
T Consensus 399 ~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi-~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~ 477 (997)
T 4a4z_A 399 ERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIF-SSIRKHDGNGLRELTPGEFTQMAGRAGRR 477 (997)
T ss_dssp TTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEE-SCSEEEETTEEEECCHHHHHHHHGGGCCT
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEE-eccccccCccCCCCCHHHHhHHhcccccC
Confidence 478999999999999999999999999999999999999999955554 4444 4999999999999999
Q ss_pred C--CCceEEEeeC--ccchHHHHHHHHhc
Q 014134 353 Q--LPSKSLLYYG--MDDRRRMEFILSKN 377 (430)
Q Consensus 353 g--~~g~~i~~~~--~~~~~~~~~~~~~~ 377 (430)
| ..|.+++++. ..+...++.++...
T Consensus 478 G~~~~G~vi~l~~~~~~~~~~~~~~i~~~ 506 (997)
T 4a4z_A 478 GLDSTGTVIVMAYNSPLSIATFKEVTMGV 506 (997)
T ss_dssp TTCSSEEEEEECCSSCCCHHHHHHHHHSC
T ss_pred CCCcceEEEEecCCCcchHHHHHHHhcCC
Confidence 8 4677777773 33556666665443
No 35
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=6.1e-40 Score=325.31 Aligned_cols=329 Identities=17% Similarity=0.149 Sum_probs=233.9
Q ss_pred hcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh---cCCCeEEEEcchHHHHHHHHHHHHH----cCcce
Q 014134 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE----KGIAG 105 (430)
Q Consensus 33 ~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt~~L~~q~~~~~~~----~~~~~ 105 (430)
.+|| +|+++|..++|.++.|+ +..++||+|||++|.+|++ ..+..++||+||++||.|..+++.. +|+.+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v 155 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTV 155 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCE
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeE
Confidence 4799 89999999999999998 9999999999999999987 2467899999999999999888766 46777
Q ss_pred eEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHH-HHHHHh--------hhcCCccEEEEecCcccc-ccCC
Q 014134 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM-SKLKKI--------HSRGLLNLVAIDEAHCIS-SWGH 175 (430)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~-~~~~~~--------~~~~~~~~lViDE~h~~~-~~~~ 175 (430)
....++.........+. ++ ++++||+++ .+++.. .....+.++|+||||.++ +.+.
T Consensus 156 ~~i~gg~~~~~r~~~~~--------~d------Iv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~ 221 (844)
T 1tf5_A 156 GLNLNSMSKDEKREAYA--------AD------ITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEAR 221 (844)
T ss_dssp EECCTTSCHHHHHHHHH--------SS------EEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTT
T ss_pred EEEeCCCCHHHHHHhcC--------CC------EEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccc
Confidence 76666654433222211 22 299999988 343221 234668899999999987 5431
Q ss_pred C----------cHHHHHHHHHHHhhCC----------CCcEE-----------------EEEcCCCc---hhHHHHHH-H
Q 014134 176 D----------FRPSYRKLSSLRNYLP----------DVPIL-----------------ALTATAAP---KVQKDVME-S 214 (430)
Q Consensus 176 ~----------~~~~~~~l~~~~~~~~----------~~~~i-----------------~~SAT~~~---~~~~~~~~-~ 214 (430)
. ....+..+..+...++ ..|+. ++|||.+. .+...+.. .
T Consensus 222 tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~ 301 (844)
T 1tf5_A 222 TPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHV 301 (844)
T ss_dssp CEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHH
T ss_pred cchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHH
Confidence 1 1123455566666654 34555 67777542 11111111 0
Q ss_pred hCCCCC--e-----------------------------------------------------------------------
Q 014134 215 LCLQNP--L----------------------------------------------------------------------- 221 (430)
Q Consensus 215 ~~~~~~--~----------------------------------------------------------------------- 221 (430)
+...+. +
T Consensus 302 l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~ 381 (844)
T 1tf5_A 302 AMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEE 381 (844)
T ss_dssp TCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGH
T ss_pred HhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhH
Confidence 100000 0
Q ss_pred ----------EEeccCCCCceEEE--EEecCcchhHHHHHHHHHHh--cCCceEEEEeCccccHHHHHHHHHcCCCccee
Q 014134 222 ----------VLKSSFNRPNLFYE--VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAA 287 (430)
Q Consensus 222 ----------~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~ 287 (430)
++....+.+..... .........|+..+.+.+.. ..+.++||||+|++.++.++..|...|+++..
T Consensus 382 ~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~v 461 (844)
T 1tf5_A 382 EEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQV 461 (844)
T ss_dssp HHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEE
T ss_pred HHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEE
Confidence 00001111111110 01112345788888887764 24668999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHhhcCCceEEEEecccccccccc--------CceEEEEecCCCCHHHHHHHhccCCCCCCCceEE
Q 014134 288 YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 359 (430)
Q Consensus 288 ~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~--------~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i 359 (430)
+||++.+.+|..+.++|+.| .|+|||++++||+|++ ++.+||+++.|.|...|+||+||+||.|.+|.++
T Consensus 462 Lhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~ 539 (844)
T 1tf5_A 462 LNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQ 539 (844)
T ss_dssp ECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEE
T ss_pred eeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEE
Confidence 99999888887776666655 6999999999999999 8899999999999999999999999999999999
Q ss_pred EeeCccch-------HHHHHHHHhccCC
Q 014134 360 LYYGMDDR-------RRMEFILSKNQSK 380 (430)
Q Consensus 360 ~~~~~~~~-------~~~~~~~~~~~~~ 380 (430)
+|++.+|. +.+..+++.+...
T Consensus 540 ~~vs~eD~l~r~f~~~~~~~~~~~~~~~ 567 (844)
T 1tf5_A 540 FYLSMEDELMRRFGAERTMAMLDRFGMD 567 (844)
T ss_dssp EEEETTSSGGGSSHHHHHHHHHHHHTCC
T ss_pred EEecHHHHHHHHHhHHHHHHHHHhcCCC
Confidence 99987653 3355555555443
No 36
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=7.8e-41 Score=348.87 Aligned_cols=317 Identities=19% Similarity=0.258 Sum_probs=189.2
Q ss_pred cCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC--------CCeEEEEcchHHHHHHHHHHHHHc----
Q 014134 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK---- 101 (430)
Q Consensus 34 ~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~--------~~~~lil~Pt~~L~~q~~~~~~~~---- 101 (430)
.|+.+|+++|.++++.+++|+++++++|||+|||++|+++++.. +.++||++|+++|+.|+.++++.+
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 46889999999999999999999999999999999999998754 778999999999999999999886
Q ss_pred CcceeEeCCCchHHHHH-HHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh---hcCCccEEEEecCccccccCCCc
Q 014134 102 GIAGEFLSSTQTMQVKT-KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH---SRGLLNLVAIDEAHCISSWGHDF 177 (430)
Q Consensus 102 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~---~~~~~~~lViDE~h~~~~~~~~~ 177 (430)
+.......++....... ..... .+ ++|+||+++....... ....+++||+||||++...+. +
T Consensus 324 ~~~v~~~~G~~~~~~~~~~~~~~-------~~------IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~-~ 389 (936)
T 4a2w_A 324 GYSVQGISGENFSNVSVEKVIED-------SD------IIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-Y 389 (936)
T ss_dssp TCCEEEECCC-----CCHHHHHH-------CS------EEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH-H
T ss_pred CceEEEEECCcchhhHHHHhccC-------CC------EEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc-H
Confidence 56666665554322111 11111 12 2899999888776542 345589999999999887543 3
Q ss_pred HHHHHHHHHHHh--hCCCCcEEEEEcCCCch----------hHHHHHHHhCCCCCeEEecc---------CCCCceEEEE
Q 014134 178 RPSYRKLSSLRN--YLPDVPILALTATAAPK----------VQKDVMESLCLQNPLVLKSS---------FNRPNLFYEV 236 (430)
Q Consensus 178 ~~~~~~l~~~~~--~~~~~~~i~~SAT~~~~----------~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 236 (430)
...+..+..... ..+..++++||||+... ....+...+... .+.... ...+......
T Consensus 390 ~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~--~i~~~~~~~~~l~~~~~~p~~~~~~ 467 (936)
T 4a2w_A 390 NVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ--AISTVRENIQELQRFMNKPEIDVRL 467 (936)
T ss_dssp HHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS--EEECCCSSHHHHHHHSCCCCEEEEE
T ss_pred HHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCc--eeecccccHHHHHHhccCCcceEEe
Confidence 333322221111 14567899999999642 111122222110 000000 0000000000
Q ss_pred Ee------------------------------------------------------------------------------
Q 014134 237 RY------------------------------------------------------------------------------ 238 (430)
Q Consensus 237 ~~------------------------------------------------------------------------------ 238 (430)
..
T Consensus 468 ~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~ 547 (936)
T 4a2w_A 468 VKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTE 547 (936)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 00
Q ss_pred ------------------------------------------------------------cCcchhHHHHHHHHHHh---
Q 014134 239 ------------------------------------------------------------KDLLDDAYADLCSVLKA--- 255 (430)
Q Consensus 239 ------------------------------------------------------------~~~~~~~~~~l~~~l~~--- 255 (430)
......++..+.+++.+
T Consensus 548 ~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~ 627 (936)
T 4a2w_A 548 HLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYR 627 (936)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhc
Confidence 00012345556666654
Q ss_pred -cCCceEEEEeCccccHHHHHHHHHcC------------CCcceeecCCCCHHHHHHHHHHhhc-CCceEEEEecccccc
Q 014134 256 -NGDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFGMG 321 (430)
Q Consensus 256 -~~~~~~iVf~~s~~~~~~l~~~l~~~------------~~~~~~~hg~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~G 321 (430)
.++.++||||++++.++.+++.|.+. |.....+||+|++.+|..+++.|++ |+++|||||+++++|
T Consensus 628 ~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eG 707 (936)
T 4a2w_A 628 YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEG 707 (936)
T ss_dssp SCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC----
T ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcC
Confidence 35689999999999999999999976 4556667899999999999999998 999999999999999
Q ss_pred ccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchH
Q 014134 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (430)
Q Consensus 322 idi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~ 368 (430)
+|+|++++||+||+|+|+..|+||+|| ||. ..|.++++++..+..
T Consensus 708 IDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 708 IDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp --CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred CcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 999999999999999999999999999 998 789999998886554
No 37
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=7.1e-42 Score=359.44 Aligned_cols=327 Identities=16% Similarity=0.213 Sum_probs=234.0
Q ss_pred HHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh----cCCCeEEEEcchHHHHHHHHHHHH
Q 014134 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLK 99 (430)
Q Consensus 24 ~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l----~~~~~~lil~Pt~~L~~q~~~~~~ 99 (430)
+++.+.+.+.+||. | ++|.++++.+++|+|++++||||||||+ |.++++ .++.++||++||++|+.|+++.++
T Consensus 44 ~~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~ 120 (1054)
T 1gku_B 44 KEFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIR 120 (1054)
T ss_dssp HHHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHH
Confidence 34556677778999 9 9999999999999999999999999998 666665 357899999999999999999998
Q ss_pred HcC----c----ceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCcccc
Q 014134 100 EKG----I----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (430)
Q Consensus 100 ~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~ 171 (430)
.++ . ......++............+.. .++ +|+||+++.++... +..+++||+||||++.
T Consensus 121 ~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~I--------lV~TP~~L~~~l~~--L~~l~~lViDEah~~l 188 (1054)
T 1gku_B 121 KYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKI--------VITTTQFLSKHYRE--LGHFDFIFVDDVDAIL 188 (1054)
T ss_dssp HHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSE--------EEEEHHHHHHCSTT--SCCCSEEEESCHHHHH
T ss_pred HHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCE--------EEEcHHHHHHHHHH--hccCCEEEEeChhhhh
Confidence 753 3 34444454444333333333332 223 99999988876554 5579999999999999
Q ss_pred ccCCCcHHHHHHHHHH-----HhhCCCCcEEEEEcCCCchh--HHHHHH-HhCCCCCeEEeccCCCCceEEEEEecCcch
Q 014134 172 SWGHDFRPSYRKLSSL-----RNYLPDVPILALTATAAPKV--QKDVME-SLCLQNPLVLKSSFNRPNLFYEVRYKDLLD 243 (430)
Q Consensus 172 ~~~~~~~~~~~~l~~~-----~~~~~~~~~i~~SAT~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (430)
+++..++..+..+.-. ....+..|.+++|||+++.. ...+.. ..... +.........+...... .
T Consensus 189 ~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~---v~~~~~~~~~i~~~~~~----~ 261 (1054)
T 1gku_B 189 KASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFD---IGSSRITVRNVEDVAVN----D 261 (1054)
T ss_dssp TSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCC---CSCCEECCCCEEEEEES----C
T ss_pred hccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceEEE---ccCcccCcCCceEEEec----h
Confidence 8664333322221100 00013578999999998861 111121 11111 00111222333333331 3
Q ss_pred hHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEE----ecccc
Q 014134 244 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA----TVAFG 319 (430)
Q Consensus 244 ~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~----T~~~~ 319 (430)
.+...+.++++.. ++++||||++++.++.+++.|++. +.+..+||++ ..+++.|++|+.+|||| |++++
T Consensus 262 ~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~ 334 (1054)
T 1gku_B 262 ESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLV 334 (1054)
T ss_dssp CCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------
T ss_pred hHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeE
Confidence 3445566666654 568999999999999999999988 8999999998 37789999999999999 89999
Q ss_pred ccccccCc-eEEEEecCC--------------------------------------------------------------
Q 014134 320 MGIDRKDV-RLVCHFNIP-------------------------------------------------------------- 336 (430)
Q Consensus 320 ~Gidi~~~-~~vi~~~~p-------------------------------------------------------------- 336 (430)
+|+|+|+| ++||++++|
T Consensus 335 rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 414 (1054)
T 1gku_B 335 RGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDV 414 (1054)
T ss_dssp CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSS
T ss_pred eccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccce
Confidence 99999996 999999999
Q ss_pred ---------CCHHHHHHHhccCCCCCCCc--eEEEeeCccchHHHHHHHHhccC
Q 014134 337 ---------KSMEAFYQESGRAGRDQLPS--KSLLYYGMDDRRRMEFILSKNQS 379 (430)
Q Consensus 337 ---------~s~~~~~q~~GR~~R~g~~g--~~i~~~~~~~~~~~~~~~~~~~~ 379 (430)
.+..+|+||+||+||.|..| .+++++..++...++.+.+.++.
T Consensus 415 ~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 415 VVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred eEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 79999999999999987775 48888888888888887776653
No 38
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.7e-41 Score=347.51 Aligned_cols=310 Identities=18% Similarity=0.247 Sum_probs=205.7
Q ss_pred cchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC-----C----CeEEEEcchHHHHHHH-HHHHHHcC---cc
Q 014134 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----P----GIVLVVSPLIALMENQ-VIGLKEKG---IA 104 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~-----~----~~~lil~Pt~~L~~q~-~~~~~~~~---~~ 104 (430)
+|+++|.++++.+++++++++++|||+|||++|+++++.. . .++||++|+++|+.|+ .+++.+++ ..
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~ 86 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYR 86 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSC
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCce
Confidence 5999999999999999999999999999999999988642 2 7899999999999999 99998864 44
Q ss_pred eeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHH--------hhhcCCccEEEEecCccccccCCC
Q 014134 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--------IHSRGLLNLVAIDEAHCISSWGHD 176 (430)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~--------~~~~~~~~~lViDE~h~~~~~~~~ 176 (430)
.....+............ .. .++ +|+||+++..... ......+++||+||||++...+ .
T Consensus 87 v~~~~g~~~~~~~~~~~~----~~--~~I------lv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~-~ 153 (699)
T 4gl2_A 87 VIGLSGDTQLKISFPEVV----KS--CDI------IISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEA-V 153 (699)
T ss_dssp EEEEC----CCCCHHHHH----HS--CSE------EEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTB-S
T ss_pred EEEEeCCcchhhHHHhhh----cC--CCE------EEECHHHHHHHHhccccccccceecccCcEEEEECccccCccc-h
Confidence 555544332221111111 11 222 8999998876542 2245668999999999985432 2
Q ss_pred cHHHHHHHHH--HHhhC---------CCCcEEEEEcCCCch-------hHHHH---HHHhCCCCCeEE-------eccCC
Q 014134 177 FRPSYRKLSS--LRNYL---------PDVPILALTATAAPK-------VQKDV---MESLCLQNPLVL-------KSSFN 228 (430)
Q Consensus 177 ~~~~~~~l~~--~~~~~---------~~~~~i~~SAT~~~~-------~~~~~---~~~~~~~~~~~~-------~~~~~ 228 (430)
+......+.. +.... +..++++||||+... ....+ ...+........ .....
T Consensus 154 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~ 233 (699)
T 4gl2_A 154 YNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQ 233 (699)
T ss_dssp SCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSC
T ss_pred HHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcC
Confidence 4333332211 11111 567899999999973 22222 222222000000 00001
Q ss_pred CCceEEEEEecCc-------------------------------------------------------------------
Q 014134 229 RPNLFYEVRYKDL------------------------------------------------------------------- 241 (430)
Q Consensus 229 ~~~~~~~~~~~~~------------------------------------------------------------------- 241 (430)
.+...+.......
T Consensus 234 ~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (699)
T 4gl2_A 234 EPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQI 313 (699)
T ss_dssp CCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 1111111110000
Q ss_pred -----------------------------------------------------------------chhHHHHHHHHH---
Q 014134 242 -----------------------------------------------------------------LDDAYADLCSVL--- 253 (430)
Q Consensus 242 -----------------------------------------------------------------~~~~~~~l~~~l--- 253 (430)
...++..+.+++
T Consensus 314 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~ 393 (699)
T 4gl2_A 314 NDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQ 393 (699)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Confidence 001111122222
Q ss_pred -HhcC-CceEEEEeCccccHHHHHHHHHcC------CCcceeecCC--------CCHHHHHHHHHHhhcCCceEEEEecc
Q 014134 254 -KANG-DTCAIVYCLERTTCDELSAYLSAG------GISCAAYHAG--------LNDKARSSVLDDWISSRKQVVVATVA 317 (430)
Q Consensus 254 -~~~~-~~~~iVf~~s~~~~~~l~~~l~~~------~~~~~~~hg~--------~~~~~r~~~~~~f~~g~~~vLv~T~~ 317 (430)
...+ +.++||||++++.++.+++.|++. |+.+..+||+ |++.+|..+++.|++|+.+|||||++
T Consensus 394 ~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~ 473 (699)
T 4gl2_A 394 YTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTV 473 (699)
T ss_dssp HHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECS
T ss_pred HhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccc
Confidence 2223 789999999999999999999987 8999999999 99999999999999999999999999
Q ss_pred ccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeC
Q 014134 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363 (430)
Q Consensus 318 ~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~ 363 (430)
+++|+|+|++++||+||+|+|+..|+||+||+||.| .+++++.
T Consensus 474 ~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~ 516 (699)
T 4gl2_A 474 AEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVA 516 (699)
T ss_dssp CCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEE
T ss_pred cccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEE
Confidence 999999999999999999999999999999976654 4444443
No 39
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=6.9e-41 Score=327.22 Aligned_cols=288 Identities=18% Similarity=0.160 Sum_probs=217.2
Q ss_pred cchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCcc-eeEeCCCchHHH
Q 014134 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA-GEFLSSTQTMQV 116 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~ 116 (430)
+|+++|.++++.+++++++++++|||+|||++++.++...+.++||++|+++|+.||.+++.+++.. .....+....
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-- 170 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-- 170 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC--
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC--
Confidence 6999999999999999999999999999999999998877889999999999999999999998777 6665544321
Q ss_pred HHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcE
Q 014134 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196 (430)
Q Consensus 117 ~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 196 (430)
. .+++|+||+.+....... ...+++||+||+|++.+.+ +. .+...++..++
T Consensus 171 -----------~--------~~Ivv~T~~~l~~~~~~~-~~~~~liIvDEaH~~~~~~--~~-------~~~~~~~~~~~ 221 (472)
T 2fwr_A 171 -----------L--------KPLTVSTYDSAYVNAEKL-GNRFMLLIFDEVHHLPAES--YV-------QIAQMSIAPFR 221 (472)
T ss_dssp -----------C--------CSEEEEEHHHHHHTHHHH-TTTCSEEEEETGGGTTSTT--TH-------HHHHTCCCSEE
T ss_pred -----------c--------CCEEEEEcHHHHHHHHHh-cCCCCEEEEECCcCCCChH--HH-------HHHHhcCCCeE
Confidence 1 223889998766554432 2458999999999998754 32 24555677889
Q ss_pred EEEEcCCCchhHH--HHHHHhC---------------CCCCeE--EeccCCC---------------------------C
Q 014134 197 LALTATAAPKVQK--DVMESLC---------------LQNPLV--LKSSFNR---------------------------P 230 (430)
Q Consensus 197 i~~SAT~~~~~~~--~~~~~~~---------------~~~~~~--~~~~~~~---------------------------~ 230 (430)
+++||||.+.... .+...++ ...... +...... .
T Consensus 222 l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (472)
T 2fwr_A 222 LGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAE 301 (472)
T ss_dssp EEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCS
T ss_pred EEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchh
Confidence 9999999842110 0111110 011110 0000000 0
Q ss_pred ceEEEEE--------------------ecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecC
Q 014134 231 NLFYEVR--------------------YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHA 290 (430)
Q Consensus 231 ~~~~~~~--------------------~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg 290 (430)
.....+. .......+...+.+++....++++||||++.+.++.+++.|. +..+||
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g 376 (472)
T 2fwr_A 302 DFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITH 376 (472)
T ss_dssp SSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCS
T ss_pred hHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeC
Confidence 0000000 000123466788888888778899999999999999999873 678999
Q ss_pred CCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCC-ceEEEe
Q 014134 291 GLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP-SKSLLY 361 (430)
Q Consensus 291 ~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~-g~~i~~ 361 (430)
+++..+|+.+++.|++|+.+|||||+++++|+|+|++++||+++.|+|+..|.||+||+||.|+. +.++++
T Consensus 377 ~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 377 RTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448 (472)
T ss_dssp SSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999865 455554
No 40
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2.5e-41 Score=335.93 Aligned_cols=310 Identities=13% Similarity=0.099 Sum_probs=216.4
Q ss_pred CChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh----cCCCeEEEEcchHHHHHHHH
Q 014134 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQV 95 (430)
Q Consensus 20 ~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l----~~~~~~lil~Pt~~L~~q~~ 95 (430)
+++++.+.+.+.. ....++|+|+.+++.++++++++++||||||||++|+++++ ..+.++||++||++|+.|+.
T Consensus 155 l~~~~~~~~~l~~--~~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~ 232 (618)
T 2whx_A 155 VTKSGDYVSAITQ--AERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEME 232 (618)
T ss_dssp -------CEECBC--CCCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHH
T ss_pred ccchHHHHHHHhh--ccccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHH
Confidence 4455555444443 24778999888899999999999999999999999988887 45779999999999999999
Q ss_pred HHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHH-HHHhhhcCCccEEEEecCccccccC
Q 014134 96 IGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK-LKKIHSRGLLNLVAIDEAHCISSWG 174 (430)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~-~~~~~~~~~~~~lViDE~h~~~~~~ 174 (430)
+.+....+ ....... .........+ .+.|.+.+.. +.....+.++++||+||||++ +.+
T Consensus 233 ~~l~~~~v--~~~~~~l---------~~~~tp~~~i--------~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~ 292 (618)
T 2whx_A 233 EALRGLPI--RYQTPAV---------KSDHTGREIV--------DLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPC 292 (618)
T ss_dssp HHTTTSCE--EECCTTS---------SCCCCSSSCE--------EEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHH
T ss_pred HHhcCCce--eEecccc---------eeccCCCceE--------EEEChHHHHHHHhccccccCCeEEEEECCCCC-Ccc
Confidence 88874322 1111000 0000111111 2345554333 333344678999999999997 333
Q ss_pred CCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCcchhHHHHHHHHHH
Q 014134 175 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK 254 (430)
Q Consensus 175 ~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 254 (430)
+...+..+...... ++.|+++||||+++.... +...++..+......+ ...+..+...+.
T Consensus 293 --~~~~~~~i~~~l~~-~~~q~il~SAT~~~~~~~-----~~~~~~~~~~v~~~~~------------~~~~~~ll~~l~ 352 (618)
T 2whx_A 293 --SVAARGYISTRVEM-GEAAAIFMTATPPGSTDP-----FPQSNSPIEDIEREIP------------ERSWNTGFDWIT 352 (618)
T ss_dssp --HHHHHHHHHHHHHH-TSCEEEEECSSCTTCCCS-----SCCCSSCEEEEECCCC------------SSCCSSSCHHHH
T ss_pred --HHHHHHHHHHHhcc-cCccEEEEECCCchhhhh-----hhccCCceeeecccCC------------HHHHHHHHHHHH
Confidence 44444444433321 578999999999887432 1112222222111100 011112233344
Q ss_pred hcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEE----
Q 014134 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV---- 330 (430)
Q Consensus 255 ~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~v---- 330 (430)
+ .++++||||++++.++.+++.|++.+..+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 353 ~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g 426 (618)
T 2whx_A 353 D-YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPR 426 (618)
T ss_dssp H-CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred h-CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECc
Confidence 3 35689999999999999999999999999999985 688899999999999999999999999998 8887
Q ss_pred ----------------EEecCCCCHHHHHHHhccCCCCCC-CceEEEeeC---ccchHHHHHHHHhc
Q 014134 331 ----------------CHFNIPKSMEAFYQESGRAGRDQL-PSKSLLYYG---MDDRRRMEFILSKN 377 (430)
Q Consensus 331 ----------------i~~~~p~s~~~~~q~~GR~~R~g~-~g~~i~~~~---~~~~~~~~~~~~~~ 377 (430)
|+++.|.+.++|+||+||+||.|. .|.+++|+. ++|...+..+.+..
T Consensus 427 ~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 427 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred ceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 788889999999999999999965 899999997 77777777766654
No 41
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=4e-42 Score=330.55 Aligned_cols=273 Identities=13% Similarity=0.090 Sum_probs=189.0
Q ss_pred HHcCCCEEEEcCCCChHHHHhHHhhhc----CCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhh
Q 014134 50 VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLD 125 (430)
Q Consensus 50 l~~~~~~lv~a~tGsGKT~~~~~~~l~----~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (430)
+++|++++++||||||||++|++++++ .+.+++|++||++|+.|+++.+..+++.. ....
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~v~~--~~~~-------------- 68 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKF--HTQA-------------- 68 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEEE--ESSC--------------
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCCeEE--eccc--------------
Confidence 467899999999999999999888764 46799999999999999999988653221 1000
Q ss_pred cCCCceeEEEECCccccChhHHHH----------HHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCc
Q 014134 126 SGKPSLRLLYVTPELTATPGFMSK----------LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195 (430)
Q Consensus 126 ~~~~~~~i~~~~~~~v~T~~~~~~----------~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~ 195 (430)
...++||+.+.. +.....+.+++++|+||+|++ +.+ +...+..+..+.. .++.|
T Consensus 69 ------------~~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~--~~~~~~~~~~~~~-~~~~~ 132 (440)
T 1yks_A 69 ------------FSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPA--SIAARGWAAHRAR-ANESA 132 (440)
T ss_dssp ------------CCCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHH--HHHHHHHHHHHHH-TTSCE
T ss_pred ------------ceeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-Ccc--hHHHHHHHHHHhc-cCCce
Confidence 002556543221 112223677999999999998 222 3333333333332 35789
Q ss_pred EEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHH
Q 014134 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELS 275 (430)
Q Consensus 196 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~ 275 (430)
+++||||+++.... ......+.... ... ........+...+.+ .++++||||++++.++.++
T Consensus 133 ~l~~SAT~~~~~~~----~~~~~~~~~~~------------~~~-~~~~~~~~~~~~l~~-~~~~~lVF~~s~~~a~~l~ 194 (440)
T 1yks_A 133 TILMTATPPGTSDE----FPHSNGEIEDV------------QTD-IPSEPWNTGHDWILA-DKRPTAWFLPSIRAANVMA 194 (440)
T ss_dssp EEEECSSCTTCCCS----SCCCSSCEEEE------------ECC-CCSSCCSSSCHHHHH-CCSCEEEECSCHHHHHHHH
T ss_pred EEEEeCCCCchhhh----hhhcCCCeeEe------------eec-cChHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHH
Confidence 99999999886432 11111111100 000 000011112233333 3568999999999999999
Q ss_pred HHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEE-------------------ecCC
Q 014134 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH-------------------FNIP 336 (430)
Q Consensus 276 ~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~-------------------~~~p 336 (430)
+.|++.+..+..+|| ++|..+++.|++|+.+|||||+++++|+|+| +++||+ ++.|
T Consensus 195 ~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p 269 (440)
T 1yks_A 195 ASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLR 269 (440)
T ss_dssp HHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEE
T ss_pred HHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccc
Confidence 999999999999999 4688999999999999999999999999999 999986 8999
Q ss_pred CCHHHHHHHhccCCCC-CCCceEEEee---CccchHHHHHHHHhc
Q 014134 337 KSMEAFYQESGRAGRD-QLPSKSLLYY---GMDDRRRMEFILSKN 377 (430)
Q Consensus 337 ~s~~~~~q~~GR~~R~-g~~g~~i~~~---~~~~~~~~~~~~~~~ 377 (430)
.+.++|+||+||+||. |..|.|++++ ++.+...+..+....
T Consensus 270 ~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 270 ISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred cCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 9999999999999997 6899999996 677777777776654
No 42
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.9e-40 Score=327.17 Aligned_cols=300 Identities=14% Similarity=0.073 Sum_probs=211.1
Q ss_pred ccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc----CCCeEEEEcchHHHHHHHHHHHHHcCcc----eeEe
Q 014134 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIA----GEFL 108 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~----~~~~~lil~Pt~~L~~q~~~~~~~~~~~----~~~~ 108 (430)
.+|+++|.++++.+++++++++++|||+|||++++.++.. ...++|||+|+++|+.|+.+++.+++.. ....
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~ 191 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKI 191 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEEC
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEE
Confidence 3799999999999999999999999999999999887764 3459999999999999999999987432 2222
Q ss_pred CCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHH
Q 014134 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~ 188 (430)
.+....... . ....++ +|+||+.+.... ......+++||+||+|++.. ..+..+.
T Consensus 192 ~~~~~~~~~-------~--~~~~~I------~i~T~~~l~~~~-~~~~~~~~liIiDE~H~~~~---------~~~~~il 246 (510)
T 2oca_A 192 GGGASKDDK-------Y--KNDAPV------VVGTWQTVVKQP-KEWFSQFGMMMNDECHLATG---------KSISSII 246 (510)
T ss_dssp GGGCCTTGG-------G--CTTCSE------EEEEHHHHTTSC-GGGGGGEEEEEEETGGGCCH---------HHHHHHG
T ss_pred ecCCccccc-------c--ccCCcE------EEEeHHHHhhch-hhhhhcCCEEEEECCcCCCc---------ccHHHHH
Confidence 222111110 1 122333 788887443221 13355689999999999865 3345555
Q ss_pred hhC-CCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccC--------CCCceEEEEEecC-----------cc------
Q 014134 189 NYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF--------NRPNLFYEVRYKD-----------LL------ 242 (430)
Q Consensus 189 ~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-----------~~------ 242 (430)
..+ +..++++|||||++..... ........+....... ..+.......... ..
T Consensus 247 ~~~~~~~~~l~lSATp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (510)
T 2oca_A 247 SGLNNCMFKFGLSGSLRDGKANI-MQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKI 325 (510)
T ss_dssp GGCTTCCEEEEEESCGGGCSSCH-HHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHH
T ss_pred HhcccCcEEEEEEeCCCCCcccH-HHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHH
Confidence 555 4678999999997653221 1111111122211111 0111111111000 00
Q ss_pred ----hhHHHHHHHHHHhc---CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEe
Q 014134 243 ----DDAYADLCSVLKAN---GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (430)
Q Consensus 243 ----~~~~~~l~~~l~~~---~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T 315 (430)
..+...+.+++... ++.++|||++ .+.++.+++.|.+.+..+..+||+++..+|+.+++.|++|+.+|||||
T Consensus 326 ~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T 404 (510)
T 2oca_A 326 ITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVAS 404 (510)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEE
T ss_pred HhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEE
Confidence 12233344444443 4556666666 888999999999988899999999999999999999999999999999
Q ss_pred -ccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeC
Q 014134 316 -VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363 (430)
Q Consensus 316 -~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~ 363 (430)
+++++|+|+|++++||++++|+|+..|.|++||+||.|+.+.++++++
T Consensus 405 ~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 405 YGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999999999999998875555544
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.6e-40 Score=320.96 Aligned_cols=283 Identities=13% Similarity=0.084 Sum_probs=203.7
Q ss_pred CCccchHHHHHHHHHHHcCCCE-EEEcCCCChHHHHhHHhhh----cCCCeEEEEcchHHHHHHHHHHHHHcCcceeEeC
Q 014134 35 GHAQFRDKQLDAIQAVLSGRDC-FCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (430)
Q Consensus 35 g~~~~~~~Q~~~~~~l~~~~~~-lv~a~tGsGKT~~~~~~~l----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 109 (430)
|+.+++|+|+ ++|.+++++++ +++||||||||++|+++++ ..+.+++|++||++|+.|+.+.+.... .....
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~~--v~~~~ 77 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGLP--IRYQT 77 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC--EEECC
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCce--eeeee
Confidence 6789999985 79999998876 9999999999999988876 357899999999999999999886432 21111
Q ss_pred CCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHH-HHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHH
Q 014134 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (430)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~-~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~ 188 (430)
..... ..... +.+.+.|++.+.+. .....+.++++||+||||++ +.+ +......+ ...
T Consensus 78 ~~~~~---------~~~~~--------~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~--~~~~~~~~-~~~ 136 (451)
T 2jlq_A 78 PAVKS---------DHTGR--------EIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPC--SVAARGYI-STR 136 (451)
T ss_dssp TTCSC---------CCCSS--------CCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCC-SHH--HHHHHHHH-HHH
T ss_pred ccccc---------cCCCC--------ceEEEEChHHHHHHhhCcccccCCCEEEEeCCccC-Ccc--hHHHHHHH-HHh
Confidence 11100 00111 11257788865443 44445677999999999987 222 22222222 223
Q ss_pred hhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCcchhHHHHHHHHHHhcCCceEEEEeCcc
Q 014134 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268 (430)
Q Consensus 189 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~ 268 (430)
...++.|+++||||+++..... ...++..+......+. ..+..+...+.+ ..+++||||+++
T Consensus 137 ~~~~~~~~i~~SAT~~~~~~~~-----~~~~~~~~~~~~~~p~------------~~~~~~~~~l~~-~~~~~lVF~~s~ 198 (451)
T 2jlq_A 137 VEMGEAAAIFMTATPPGSTDPF-----PQSNSPIEDIEREIPE------------RSWNTGFDWITD-YQGKTVWFVPSI 198 (451)
T ss_dssp HHTTSCEEEEECSSCTTCCCSS-----CCCSSCEEEEECCCCS------------SCCSSSCHHHHH-CCSCEEEECSSH
T ss_pred hcCCCceEEEEccCCCccchhh-----hcCCCceEecCccCCc------------hhhHHHHHHHHh-CCCCEEEEcCCH
Confidence 3456889999999998764321 1122222211111110 000112233344 355899999999
Q ss_pred ccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEec--------------
Q 014134 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN-------------- 334 (430)
Q Consensus 269 ~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~-------------- 334 (430)
+.++.+++.|++.+..+..+||++. ..+++.|++|+.+|||||+++++|+|+|+ ++||+++
T Consensus 199 ~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~ 273 (451)
T 2jlq_A 199 KAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPER 273 (451)
T ss_dssp HHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCE
T ss_pred HHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccce
Confidence 9999999999999999999999764 57899999999999999999999999999 9999998
Q ss_pred ------CCCCHHHHHHHhccCCCCCC-CceEEEeeCc
Q 014134 335 ------IPKSMEAFYQESGRAGRDQL-PSKSLLYYGM 364 (430)
Q Consensus 335 ------~p~s~~~~~q~~GR~~R~g~-~g~~i~~~~~ 364 (430)
.|.|.++|+||+||+||.|. .|.+++|...
T Consensus 274 l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 274 VILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8888888744
No 44
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=6.3e-41 Score=334.94 Aligned_cols=297 Identities=14% Similarity=0.093 Sum_probs=204.7
Q ss_pred cCCc-----cchHHHH-----HHHHHHH------cCCCEEEEcCCCChHHHHhHHhhhc----CCCeEEEEcchHHHHHH
Q 014134 34 FGHA-----QFRDKQL-----DAIQAVL------SGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMEN 93 (430)
Q Consensus 34 ~g~~-----~~~~~Q~-----~~~~~l~------~~~~~lv~a~tGsGKT~~~~~~~l~----~~~~~lil~Pt~~L~~q 93 (430)
+||. .|+++|+ +++|.++ ++++++++||||||||++|+++++. .+.+++|++||++|+.|
T Consensus 206 ~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q 285 (673)
T 2wv9_A 206 NGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAE 285 (673)
T ss_dssp EEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHH
T ss_pred ccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHH
Confidence 4666 8999999 9999988 8999999999999999999888763 46799999999999999
Q ss_pred HHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhH-HHHHHHhhhcCCccEEEEecCccccc
Q 014134 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF-MSKLKKIHSRGLLNLVAIDEAHCISS 172 (430)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~-~~~~~~~~~~~~~~~lViDE~h~~~~ 172 (430)
+++.+..+++.. ..... .......... ...+.+. ...+.....+.++++||+||+|++.
T Consensus 286 ~~~~l~~~~i~~--~~~~l---------~~v~tp~~ll--------~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~- 345 (673)
T 2wv9_A 286 MAEALRGLPVRY--LTPAV---------QREHSGNEIV--------DVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTD- 345 (673)
T ss_dssp HHHHTTTSCCEE--CCC------------CCCCSCCCE--------EEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCC-
T ss_pred HHHHHhcCCeee--ecccc---------cccCCHHHHH--------HHHHhhhhHHHHhcccccccceEEEEeCCcccC-
Confidence 999988764321 10000 0000000000 1112221 1223333346779999999999971
Q ss_pred cCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCcchhHHHHHHHH
Q 014134 173 WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSV 252 (430)
Q Consensus 173 ~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (430)
..+......+..... .++.|+++||||+++.... ......++.. +... ........+...
T Consensus 346 --~~~~~~~~~l~~~~~-~~~~~vl~~SAT~~~~i~~----~~~~~~~i~~------------v~~~-~~~~~~~~~l~~ 405 (673)
T 2wv9_A 346 --PASIAARGYIATRVE-AGEAAAIFMTATPPGTSDP----FPDTNSPVHD------------VSSE-IPDRAWSSGFEW 405 (673)
T ss_dssp --HHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCCCS----SCCCSSCEEE------------EECC-CCSSCCSSCCHH
T ss_pred --ccHHHHHHHHHHhcc-ccCCcEEEEcCCCChhhhh----hcccCCceEE------------Eeee-cCHHHHHHHHHH
Confidence 112222333333332 2578999999999876322 0111111110 0000 000111112233
Q ss_pred HHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEE
Q 014134 253 LKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332 (430)
Q Consensus 253 l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~ 332 (430)
+.+ .++++||||++++.++.+++.|++.+..+..+||+ +|..+++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 406 l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~ 479 (673)
T 2wv9_A 406 ITD-YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVID 479 (673)
T ss_dssp HHS-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEE
T ss_pred HHh-CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEE
Confidence 333 46789999999999999999999999999999994 799999999999999999999999999999 999998
Q ss_pred --------------------ecCCCCHHHHHHHhccCCCC-CCCceEEEee---CccchHHHHHHHHh
Q 014134 333 --------------------FNIPKSMEAFYQESGRAGRD-QLPSKSLLYY---GMDDRRRMEFILSK 376 (430)
Q Consensus 333 --------------------~~~p~s~~~~~q~~GR~~R~-g~~g~~i~~~---~~~~~~~~~~~~~~ 376 (430)
++.|.+.++|+||+||+||. |+.|.|++|+ ++.+...+..+...
T Consensus 480 ~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~ 547 (673)
T 2wv9_A 480 CRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAK 547 (673)
T ss_dssp CCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHH
T ss_pred CCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHH
Confidence 56899999999999999999 7899999996 56665555554443
No 45
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.1e-37 Score=308.37 Aligned_cols=316 Identities=17% Similarity=0.115 Sum_probs=211.9
Q ss_pred HhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc---CCCeEEEEcchHHHHHHHHHHHHH----cCcc
Q 014134 32 WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE----KGIA 104 (430)
Q Consensus 32 ~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~---~~~~~lil~Pt~~L~~q~~~~~~~----~~~~ 104 (430)
+.+|. +|+++|..+++.++.|+ +..++||+|||++|.+|++. .+..++|++||++||.|.++++.. +|+.
T Consensus 69 R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~ 145 (853)
T 2fsf_A 69 RVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLT 145 (853)
T ss_dssp HHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCe
Confidence 34575 79999999999999998 99999999999999999873 467899999999999999988766 4677
Q ss_pred eeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHH-HHHHHh--------hhcCCccEEEEecCcccc-ccC
Q 014134 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM-SKLKKI--------HSRGLLNLVAIDEAHCIS-SWG 174 (430)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~-~~~~~~--------~~~~~~~~lViDE~h~~~-~~~ 174 (430)
+....++.........+. + +++++||+++ .+++.. .....+.++|+||||+++ +.+
T Consensus 146 v~~i~GG~~~~~r~~~~~--------~------dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a 211 (853)
T 2fsf_A 146 VGINLPGMPAPAKREAYA--------A------DITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEA 211 (853)
T ss_dssp EEECCTTCCHHHHHHHHH--------S------SEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTT
T ss_pred EEEEeCCCCHHHHHHhcC--------C------CEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcC
Confidence 766666655432222211 2 2399999987 454332 234668999999999998 433
Q ss_pred CC----------cHHHHHHHHHHHhhCC---------------------CCcEE------------------------EE
Q 014134 175 HD----------FRPSYRKLSSLRNYLP---------------------DVPIL------------------------AL 199 (430)
Q Consensus 175 ~~----------~~~~~~~l~~~~~~~~---------------------~~~~i------------------------~~ 199 (430)
.. ....+..+..+...+| +.|+. ++
T Consensus 212 ~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lf 291 (853)
T 2fsf_A 212 RTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLY 291 (853)
T ss_dssp TCEEEEEEC-----------------------------------------------------------------------
T ss_pred cccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCccccccccc
Confidence 10 0111222333333332 22332 77
Q ss_pred EcCCCc---hhHHHHH---------HHhCC------------------------CCC-----------------------
Q 014134 200 TATAAP---KVQKDVM---------ESLCL------------------------QNP----------------------- 220 (430)
Q Consensus 200 SAT~~~---~~~~~~~---------~~~~~------------------------~~~----------------------- 220 (430)
|||.+. .+...+. .++-. ..+
T Consensus 292 sat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qn 371 (853)
T 2fsf_A 292 SPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQN 371 (853)
T ss_dssp -----------------------------------------------------------------CCCCCEEEEEEEHHH
T ss_pred CcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHH
Confidence 887543 1110000 00000 000
Q ss_pred ----------------------------eEEeccCCCCceEEE--EEecCcchhHHHHHHHHHHh--cCCceEEEEeCcc
Q 014134 221 ----------------------------LVLKSSFNRPNLFYE--VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLER 268 (430)
Q Consensus 221 ----------------------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~--~~~~~~iVf~~s~ 268 (430)
.++....+.+..... .........|+..+.+.+.. ..+.++||||+|+
T Consensus 372 yfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~si 451 (853)
T 2fsf_A 372 YFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISI 451 (853)
T ss_dssp HHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSH
T ss_pred HHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcH
Confidence 000011111111111 01112346788888888864 3567899999999
Q ss_pred ccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCc---------------------
Q 014134 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV--------------------- 327 (430)
Q Consensus 269 ~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~--------------------- 327 (430)
+.++.+++.|++.|+++..+||++.+.++..+.++|+.| .|+|||++++||+|++..
T Consensus 452 e~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~ 529 (853)
T 2fsf_A 452 EKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKI 529 (853)
T ss_dssp HHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHH
Confidence 999999999999999999999999888888888889888 699999999999999973
Q ss_pred ----------------eEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccc
Q 014134 328 ----------------RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (430)
Q Consensus 328 ----------------~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~ 366 (430)
.+||+++.|.|...|.||+||+||.|.+|.+++|++..|
T Consensus 530 ~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 530 KADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 699999999999999999999999999999999998775
No 46
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=7.7e-37 Score=302.62 Aligned_cols=331 Identities=16% Similarity=0.126 Sum_probs=239.1
Q ss_pred HhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc---CCCeEEEEcchHHHHHHHHHHHHH----cCcc
Q 014134 32 WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE----KGIA 104 (430)
Q Consensus 32 ~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~---~~~~~lil~Pt~~L~~q~~~~~~~----~~~~ 104 (430)
+.+|+ +|+++|..+++.++.|+ ++.++||+|||++|.+|++. .+..++||+||++||.|..+++.. +|+.
T Consensus 106 R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLs 182 (922)
T 1nkt_A 106 RVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQ 182 (922)
T ss_dssp HHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCe
Confidence 56798 89999999999999998 99999999999999999852 467899999999999998888766 4777
Q ss_pred eeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHH-HHHHHh--------hhcCCccEEEEecCcccc-ccC
Q 014134 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM-SKLKKI--------HSRGLLNLVAIDEAHCIS-SWG 174 (430)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~-~~~~~~--------~~~~~~~~lViDE~h~~~-~~~ 174 (430)
+....++.........+. ++ ++++||+++ .+++.. .....+.++|+||||.++ +.+
T Consensus 183 v~~i~gg~~~~~r~~~y~--------~D------IvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDea 248 (922)
T 1nkt_A 183 VGVILATMTPDERRVAYN--------AD------ITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEA 248 (922)
T ss_dssp EEECCTTCCHHHHHHHHH--------SS------EEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGG
T ss_pred EEEEeCCCCHHHHHHhcC--------CC------EEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcC
Confidence 777766655433332221 22 299999987 344332 234568899999999997 432
Q ss_pred C----------CcHHHHHHHHHHHhhCC----------CCcEE-----------------EEEcCCCc---hhHHHHHH-
Q 014134 175 H----------DFRPSYRKLSSLRNYLP----------DVPIL-----------------ALTATAAP---KVQKDVME- 213 (430)
Q Consensus 175 ~----------~~~~~~~~l~~~~~~~~----------~~~~i-----------------~~SAT~~~---~~~~~~~~- 213 (430)
. .....+..+..+...++ +.|+. ++|||.+. .+...+..
T Consensus 249 rtPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~ 328 (922)
T 1nkt_A 249 RTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAK 328 (922)
T ss_dssp GSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHH
T ss_pred ccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHH
Confidence 1 11345566777777775 34566 78899764 22111111
Q ss_pred HhCCCC--------CeEEe-------------------------------------------------------------
Q 014134 214 SLCLQN--------PLVLK------------------------------------------------------------- 224 (430)
Q Consensus 214 ~~~~~~--------~~~~~------------------------------------------------------------- 224 (430)
.+...+ .+++.
T Consensus 329 ~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te 408 (922)
T 1nkt_A 329 ELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTE 408 (922)
T ss_dssp HHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGG
T ss_pred HHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhH
Confidence 111100 00000
Q ss_pred --------------ccCCCCceEEE--EEecCcchhHHHHHHHHHHhc--CCceEEEEeCccccHHHHHHHHHcCCCcce
Q 014134 225 --------------SSFNRPNLFYE--VRYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCA 286 (430)
Q Consensus 225 --------------~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~ 286 (430)
...+.+..... .........|+..+.+.+... .+.++||||+|++.++.+++.|++.|+++.
T Consensus 409 ~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~ 488 (922)
T 1nkt_A 409 AAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHN 488 (922)
T ss_dssp HHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEE
Confidence 00001111000 011123456888888877542 567899999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCc---------------------------------------
Q 014134 287 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV--------------------------------------- 327 (430)
Q Consensus 287 ~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~--------------------------------------- 327 (430)
.+||+..+.++..+.++|+.| .|+|||++++||+|++..
T Consensus 489 vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (922)
T 1nkt_A 489 VLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEE 566 (922)
T ss_dssp EECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHH
T ss_pred EecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHH
Confidence 999999888888888888877 699999999999999964
Q ss_pred -------------eEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccch-------HHHHHHHHhccCCC
Q 014134 328 -------------RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR-------RRMEFILSKNQSKN 381 (430)
Q Consensus 328 -------------~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~-------~~~~~~~~~~~~~~ 381 (430)
.+||+++.|.|...|.||+||+||.|.+|.+++|++.+|. +.+..+++.+...+
T Consensus 567 ~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~r~f~~~~~~~~~~~~~~~~ 640 (922)
T 1nkt_A 567 ASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFNGAALETLLTRLNLPD 640 (922)
T ss_dssp TTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTTHHHHHHHHHHTTCCT
T ss_pred HHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHHHHhhhHHHHHHHHHhCCCC
Confidence 5999999999999999999999999999999999987764 33556666665543
No 47
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=4.7e-38 Score=320.03 Aligned_cols=328 Identities=16% Similarity=0.111 Sum_probs=236.2
Q ss_pred cccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcC-CCEEEEcCCCChHHHHhHHhhhc----C--CCeEEEEcc
Q 014134 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA----K--PGIVLVVSP 86 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~-~~~lv~a~tGsGKT~~~~~~~l~----~--~~~~lil~P 86 (430)
...|..+++++.+.+.+.. .+ ..|++.|+++++.++.+ ++++++||||+|||+..-..++. . +.++++++|
T Consensus 71 ~~~f~~~~l~~~~~~~l~~-r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P 148 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKI-RR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQP 148 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHH-HT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEES
T ss_pred CCCccccCCCHHHHHHHHH-hh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCc
Confidence 4568999999999999998 46 67999999999988765 67999999999999832222221 2 567999999
Q ss_pred hHHHHHHHHHHHHH-cCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHH-HhhhcCCccEEEE
Q 014134 87 LIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVAI 164 (430)
Q Consensus 87 t~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~-~~~~~~~~~~lVi 164 (430)
+++|+.|+.+.+.. ++.......+.... ........ +.++++||+.+.+.. ....+..+++||+
T Consensus 149 ~r~La~q~~~~l~~~~~~~v~~~vG~~i~------~~~~~~~~--------~~I~v~T~G~l~r~l~~~~~l~~~~~lIl 214 (773)
T 2xau_A 149 RRVAAMSVAQRVAEEMDVKLGEEVGYSIR------FENKTSNK--------TILKYMTDGMLLREAMEDHDLSRYSCIIL 214 (773)
T ss_dssp CHHHHHHHHHHHHHHTTCCBTTTEEEEET------TEEECCTT--------CSEEEEEHHHHHHHHHHSTTCTTEEEEEE
T ss_pred hHHHHHHHHHHHHHHhCCchhheecceec------cccccCCC--------CCEEEECHHHHHHHHhhCccccCCCEEEe
Confidence 99999999887755 33222111110000 00000111 223899999777653 3445777999999
Q ss_pred ecCcc-ccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCcc-
Q 014134 165 DEAHC-ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL- 242 (430)
Q Consensus 165 DE~h~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 242 (430)
||+|. ..+ ....+..+..+....++.++++||||++.. .+..++.. .+. +........+...+......
T Consensus 215 DEah~R~ld----~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~---~l~~~~~~-~~v-i~v~gr~~pv~~~~~~~~~~~ 285 (773)
T 2xau_A 215 DEAHERTLA----TDILMGLLKQVVKRRPDLKIIIMSATLDAE---KFQRYFND-APL-LAVPGRTYPVELYYTPEFQRD 285 (773)
T ss_dssp CSGGGCCHH----HHHHHHHHHHHHHHCTTCEEEEEESCSCCH---HHHHHTTS-CCE-EECCCCCCCEEEECCSSCCSC
T ss_pred cCccccccc----hHHHHHHHHHHHHhCCCceEEEEeccccHH---HHHHHhcC-CCc-ccccCcccceEEEEecCCchh
Confidence 99995 443 222344556666667789999999999754 33444432 232 22222222222222111111
Q ss_pred --hhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHc-----------CCCcceeecCCCCHHHHHHHHHHhh----
Q 014134 243 --DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA-----------GGISCAAYHAGLNDKARSSVLDDWI---- 305 (430)
Q Consensus 243 --~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~-----------~~~~~~~~hg~~~~~~r~~~~~~f~---- 305 (430)
...+..+..+.....++++||||++++.++.+++.|.+ .++.+..+||++++++|..+++.|.
T Consensus 286 ~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~ 365 (773)
T 2xau_A 286 YLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHN 365 (773)
T ss_dssp HHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSS
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccC
Confidence 23344555555555678999999999999999999975 5778999999999999999999999
Q ss_pred -cCCceEEEEeccccccccccCceEEEEecC------------------CCCHHHHHHHhccCCCCCCCceEEEeeCccc
Q 014134 306 -SSRKQVVVATVAFGMGIDRKDVRLVCHFNI------------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (430)
Q Consensus 306 -~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~------------------p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~ 366 (430)
+|..+|||||+++++|+|+|++++||++++ |.|..+|.||+||+||. ..|.|+.++++.+
T Consensus 366 ~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~ 444 (773)
T 2xau_A 366 GRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEA 444 (773)
T ss_dssp SSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHH
T ss_pred CCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHH
Confidence 999999999999999999999999999887 88999999999999999 8999999998765
Q ss_pred h
Q 014134 367 R 367 (430)
Q Consensus 367 ~ 367 (430)
.
T Consensus 445 ~ 445 (773)
T 2xau_A 445 F 445 (773)
T ss_dssp H
T ss_pred h
Confidence 4
No 48
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.5e-37 Score=311.56 Aligned_cols=289 Identities=18% Similarity=0.186 Sum_probs=185.5
Q ss_pred cchHHHHHHHHHHHc----C-CCEEEEcCCCChHHHHhHHhhh---c---------CCCeEEEEcchHHHHHHHH-HHHH
Q 014134 38 QFRDKQLDAIQAVLS----G-RDCFCLMPTGGGKSMCYQIPAL---A---------KPGIVLVVSPLIALMENQV-IGLK 99 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~----~-~~~lv~a~tGsGKT~~~~~~~l---~---------~~~~~lil~Pt~~L~~q~~-~~~~ 99 (430)
.|+++|.++++.++. + +++++++|||+|||++++..+. . ...++|||+|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999999875 4 6799999999999998765442 2 4588999999999999999 7888
Q ss_pred HcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHH------hhhcCCccEEEEecCcccccc
Q 014134 100 EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK------IHSRGLLNLVAIDEAHCISSW 173 (430)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~------~~~~~~~~~lViDE~h~~~~~ 173 (430)
.++.......... .....++ +|+||+.+..... ......+++||+||||++...
T Consensus 258 ~~~~~~~~~~~~~--------------~~~~~~I------~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~ 317 (590)
T 3h1t_A 258 PFGDARHKIEGGK--------------VVKSREI------YFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSAR 317 (590)
T ss_dssp TTCSSEEECCC----------------CCSSCSE------EEEEGGGC------CCGGGGSCTTSCSEEEESCCC-----
T ss_pred hcchhhhhhhccC--------------CCCCCcE------EEEEhhhhccccccccccccCCCCccCEEEEECCcccccc
Confidence 7765544332110 1112333 7788887665432 233456899999999998754
Q ss_pred CCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEe------ccCCCCceEEEEEec--------
Q 014134 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLK------SSFNRPNLFYEVRYK-------- 239 (430)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-------- 239 (430)
+. ..+..+...+++.++++|||||...........++.... .+. .....+.........
T Consensus 318 ~~------~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~~~~-~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 390 (590)
T 3h1t_A 318 DN------SNWREILEYFEPAFQIGMTATPLREDNRDTYRYFGNPIY-TYSLRQGIDDGFLAPYRVHRVISEVDAAGWRP 390 (590)
T ss_dssp ----------CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSCSCSE-EECHHHHHHHTSSCCEEEEEEEETTCC-----
T ss_pred ch------HHHHHHHHhCCcceEEEeccccccccchhHHHHcCCceE-ecCHHHHhhCCccCCcEEEEeeeeeecccccc
Confidence 21 334556677788899999999987655544444432110 000 000011000000000
Q ss_pred -------------------Ccc----------hhHHHHHHHHHHh-cCCceEEEEeCccccHHHHHHHHHcCCCc-----
Q 014134 240 -------------------DLL----------DDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGIS----- 284 (430)
Q Consensus 240 -------------------~~~----------~~~~~~l~~~l~~-~~~~~~iVf~~s~~~~~~l~~~l~~~~~~----- 284 (430)
... ......+.+.+.. ...+++||||++++.|+.+++.|.+.+..
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~ 470 (590)
T 3h1t_A 391 SKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKH 470 (590)
T ss_dssp ------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTC
T ss_pred ccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccC
Confidence 000 0111223333443 34579999999999999999999875432
Q ss_pred ---ceeecCCCCHHHHHHHHHHhhcCCce---EEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCC
Q 014134 285 ---CAAYHAGLNDKARSSVLDDWISSRKQ---VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354 (430)
Q Consensus 285 ---~~~~hg~~~~~~r~~~~~~f~~g~~~---vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~ 354 (430)
+..+||++++ +|..+++.|++|+.+ |||||+++++|+|+|++++||++++|+|+..|+||+||+||.+.
T Consensus 471 ~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 471 PDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred CCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 6778998764 799999999998766 88999999999999999999999999999999999999999875
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.1e-38 Score=308.45 Aligned_cols=272 Identities=14% Similarity=0.121 Sum_probs=186.7
Q ss_pred HHHHcCCCEEEEcCCCChHHHHhHHhhhc----CCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhh
Q 014134 48 QAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYED 123 (430)
Q Consensus 48 ~~l~~~~~~lv~a~tGsGKT~~~~~~~l~----~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (430)
..+.++++++++||||||||++|+++++. .+.++||++||++|+.|+.+.+..+ ........... .
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~~~~~~--------~ 85 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGL--PVRYQTSAVQR--------E 85 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTS--CEEECC--------------
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCc--eEeEEeccccc--------C
Confidence 33556789999999999999999988874 5789999999999999999998743 22221111100 0
Q ss_pred hhcCCCceeEEEECCccccChhHH-HHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcC
Q 014134 124 LDSGKPSLRLLYVTPELTATPGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202 (430)
Q Consensus 124 ~~~~~~~~~i~~~~~~~v~T~~~~-~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT 202 (430)
......+ .+.|.+.+ ..+.....+.++++||+||||.... ........+.. ....++.|+++||||
T Consensus 86 -~t~~~~i--------~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~---~~~~~~~~~~~-~~~~~~~~~il~SAT 152 (459)
T 2z83_A 86 -HQGNEIV--------DVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDP---ASIAARGYIAT-KVELGEAAAIFMTAT 152 (459)
T ss_dssp ---CCCSE--------EEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSH---HHHHHHHHHHH-HHHTTSCEEEEECSS
T ss_pred -CCCCcEE--------EEEchHHHHHHhhccccccCCcEEEEECCccCCc---hhhHHHHHHHH-HhccCCccEEEEEcC
Confidence 0111111 34455533 3344444567899999999998411 01111111222 223468899999999
Q ss_pred CCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCC
Q 014134 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG 282 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~ 282 (430)
++..... ......+...... .........+...+.+. ++++||||++++.++.+++.|++.+
T Consensus 153 ~~~~~~~----~~~~~~pi~~~~~-------------~~~~~~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~g 214 (459)
T 2z83_A 153 PPGTTDP----FPDSNAPIHDLQD-------------EIPDRAWSSGYEWITEY-AGKTVWFVASVKMGNEIAMCLQRAG 214 (459)
T ss_dssp CTTCCCS----SCCCSSCEEEEEC-------------CCCSSCCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTT
T ss_pred CCcchhh----hccCCCCeEEecc-------------cCCcchhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHHHHhcC
Confidence 9876422 1111222221110 00011111122334443 5689999999999999999999999
Q ss_pred CcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEEE--------------------ecCCCCHHHH
Q 014134 283 ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH--------------------FNIPKSMEAF 342 (430)
Q Consensus 283 ~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~--------------------~~~p~s~~~~ 342 (430)
..+..+||+ +|..+++.|++|+.+|||||+++++|+|+|+ ++||+ ++.|.|..+|
T Consensus 215 ~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~ 289 (459)
T 2z83_A 215 KKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASA 289 (459)
T ss_dssp CCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHH
T ss_pred CcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHH
Confidence 999999995 6888999999999999999999999999999 99999 6799999999
Q ss_pred HHHhccCCCCCC-CceEEEeeCcc
Q 014134 343 YQESGRAGRDQL-PSKSLLYYGMD 365 (430)
Q Consensus 343 ~q~~GR~~R~g~-~g~~i~~~~~~ 365 (430)
+||+||+||.|. .|.+++|+...
T Consensus 290 ~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 290 AQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHhccccCCCCCCCCeEEEEEccc
Confidence 999999999997 89999999775
No 50
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2.1e-38 Score=311.93 Aligned_cols=277 Identities=22% Similarity=0.205 Sum_probs=196.3
Q ss_pred chHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHHHHHHH-cCcceeEeCCCchHHHH
Q 014134 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVK 117 (430)
Q Consensus 39 ~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~ 117 (430)
+.++|.++++.+.++++++++||||||||.++.+++++++.+++|++|||+|+.|+.+.+.+ ++.......+...
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~---- 293 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT---- 293 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE----
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe----
Confidence 45566666666667889999999999999999999999888999999999999999988765 4444443333221
Q ss_pred HHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEE
Q 014134 118 TKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 197 (430)
Q Consensus 118 ~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 197 (430)
... .. .++|+||+++.. .......++++||+||||.+. .+ +...+..+.+.....+...++
T Consensus 294 -------~~~--~~------~IlV~TPGrLl~-~~~l~l~~l~~lVlDEAH~l~-~~--~~~~l~~Il~~l~~~~~~lli 354 (666)
T 3o8b_A 294 -------ITT--GA------PVTYSTYGKFLA-DGGCSGGAYDIIICDECHSTD-ST--TILGIGTVLDQAETAGARLVV 354 (666)
T ss_dssp -------ECC--CC------SEEEEEHHHHHH-TTSCCTTSCSEEEETTTTCCS-HH--HHHHHHHHHHHTTTTTCSEEE
T ss_pred -------ccC--CC------CEEEECcHHHHh-CCCcccCcccEEEEccchhcC-cc--HHHHHHHHHHhhhhcCCceEE
Confidence 111 12 338999998621 112335569999999998753 23 444444443333322233378
Q ss_pred EEEcCCCchhHHHHHHHhCCCCCeEEe--ccCCCCceEEEEEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHH
Q 014134 198 ALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELS 275 (430)
Q Consensus 198 ~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~ 275 (430)
++|||+++... ...+.... ...... +. ....... +....++++||||++++.++.++
T Consensus 355 l~SAT~~~~i~--------~~~p~i~~v~~~~~~~-i~----~~~~~~~--------l~~~~~~~vLVFv~Tr~~ae~la 413 (666)
T 3o8b_A 355 LATATPPGSVT--------VPHPNIEEVALSNTGE-IP----FYGKAIP--------IEAIRGGRHLIFCHSKKKCDELA 413 (666)
T ss_dssp EEESSCTTCCC--------CCCTTEEEEECBSCSS-EE----ETTEEEC--------GGGSSSSEEEEECSCHHHHHHHH
T ss_pred EECCCCCcccc--------cCCcceEEEeecccch-hH----HHHhhhh--------hhhccCCcEEEEeCCHHHHHHHH
Confidence 88999988421 12211111 111111 10 0000000 22335779999999999999999
Q ss_pred HHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceEEE----------Eec-----------
Q 014134 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----------HFN----------- 334 (430)
Q Consensus 276 ~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi----------~~~----------- 334 (430)
+.|++.++.+..+||++++++ |+++..+|||||+++++|||+| +++|| +||
T Consensus 414 ~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~ 485 (666)
T 3o8b_A 414 AKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTT 485 (666)
T ss_dssp HHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEE
T ss_pred HHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccccccc
Confidence 999999999999999999874 4566679999999999999998 99988 566
Q ss_pred CCCCHHHHHHHhccCCCCCCCceEEEeeCccchHH
Q 014134 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (430)
Q Consensus 335 ~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~ 369 (430)
.|.+.++|+||+||+|| |+.|. +.|+++.+...
T Consensus 486 ~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 486 VPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred CcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 89999999999999999 89999 88988776543
No 51
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=7.4e-37 Score=293.36 Aligned_cols=265 Identities=15% Similarity=0.108 Sum_probs=182.1
Q ss_pred cCCCEEEEcCCCChHHHHhHHhhh----cCCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcC
Q 014134 52 SGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~~~~l----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (430)
+|++++++||||||||++|+++++ ..+.+++|++||++|+.|+.+.+.. .......+... .....
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~~--~~v~~~~~~~~---------~~~~~ 69 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRG--EPIRYMTPAVQ---------SERTG 69 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT--SCEEEC------------------C
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhCC--CeEEEEecCcc---------ccCCC
Confidence 378999999999999999988776 5678999999999999999988863 33332221100 01111
Q ss_pred CCceeEEEECCccccChhHHH-HHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCch
Q 014134 128 KPSLRLLYVTPELTATPGFMS-KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (430)
Q Consensus 128 ~~~~~i~~~~~~~v~T~~~~~-~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~ 206 (430)
.... .+.|.+.+. .+.....+.++++||+||+|++.. .+......+..+. ..++.++++||||+++.
T Consensus 70 ~~~~--------~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~---~~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~ 137 (431)
T 2v6i_A 70 NEIV--------DFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDP---ASVAARGYIETRV-SMGDAGAIFMTATPPGT 137 (431)
T ss_dssp CCSE--------EEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSH---HHHHHHHHHHHHH-HTTSCEEEEEESSCTTC
T ss_pred CceE--------EEEchHHHHHHHhcCccccCCCEEEEeCCccCCc---cHHHHHHHHHHHh-hCCCCcEEEEeCCCCcc
Confidence 1111 334555433 334444477899999999999621 1233333344333 23578999999999985
Q ss_pred hHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcce
Q 014134 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA 286 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~ 286 (430)
... ......+.. ..... ........+.+.+.+. ++++||||++++.++.+++.|++.+..+.
T Consensus 138 ~~~----~~~~~~~i~-----------~~~~~--~~~~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~ 199 (431)
T 2v6i_A 138 TEA----FPPSNSPII-----------DEETR--IPDKAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVL 199 (431)
T ss_dssp CCS----SCCCSSCCE-----------EEECC--CCSSCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEE
T ss_pred hhh----hcCCCCcee-----------ecccc--CCHHHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEE
Confidence 321 000111111 00000 0011112233445543 56899999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHhhcCCceEEEEeccccccccccCceE-----------------EEEecCCCCHHHHHHHhccC
Q 014134 287 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL-----------------VCHFNIPKSMEAFYQESGRA 349 (430)
Q Consensus 287 ~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~-----------------vi~~~~p~s~~~~~q~~GR~ 349 (430)
.+||+ +|..+++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+.++|+||+||+
T Consensus 200 ~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~ 274 (431)
T 2v6i_A 200 YLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRI 274 (431)
T ss_dssp EESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTS
T ss_pred EeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhcc
Confidence 99997 578899999999999999999999999999 543 67889999999999999999
Q ss_pred CCCCC-CceEEEee
Q 014134 350 GRDQL-PSKSLLYY 362 (430)
Q Consensus 350 ~R~g~-~g~~i~~~ 362 (430)
||.|. .|.++++.
T Consensus 275 GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 275 GRNPEKLGDIYAYS 288 (431)
T ss_dssp SCCTTCCCCEEEEC
T ss_pred CCCCCCCCeEEEEc
Confidence 99985 45555554
No 52
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.5e-36 Score=316.90 Aligned_cols=314 Identities=16% Similarity=0.156 Sum_probs=219.2
Q ss_pred cchHHHHHHHHHHHcC--CCEEEEcCCCChHHHHhHHhhh---cC--CCeEEEEcchHHHHHHHHHHHHH-cCcceeEeC
Q 014134 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPAL---AK--PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLS 109 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~--~~~lv~a~tGsGKT~~~~~~~l---~~--~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~ 109 (430)
+|+|+|.+++..++.. .+++++++||+|||++++..+. .. ..++|||||+ .|+.||.+++.+ ++....+..
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~~ 231 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALFD 231 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEECC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEEc
Confidence 6999999999998864 5899999999999998876653 23 3489999999 999999999944 665554443
Q ss_pred CCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHH---HHhhhcCCccEEEEecCccccccCCCcHHHHHHHHH
Q 014134 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (430)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~---~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~ 186 (430)
+... .. ............++ +|+|++.+... ........+++||+||||++.+.+......+..+..
T Consensus 232 ~~~~---~~-~~~~~~~~~~~~dI------vI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~ 301 (968)
T 3dmq_A 232 DERY---AE-AQHDAYNPFDTEQL------VICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQ 301 (968)
T ss_dssp HHHH---HH-HHHTTCSSSTTCSE------EEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHH
T ss_pred cchh---hh-hhhhcccccccCCE------EEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHH
Confidence 2111 11 11111111122344 67777655332 122334568999999999998765444333445554
Q ss_pred HHhhCCCCcEEEEEcCCCchhHHHHHH---HhCC----------------------------C-----------------
Q 014134 187 LRNYLPDVPILALTATAAPKVQKDVME---SLCL----------------------------Q----------------- 218 (430)
Q Consensus 187 ~~~~~~~~~~i~~SAT~~~~~~~~~~~---~~~~----------------------------~----------------- 218 (430)
+.. ...+++++||||.++...+++. .+.. .
T Consensus 302 L~~--~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~ 379 (968)
T 3dmq_A 302 LAE--HVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGE 379 (968)
T ss_dssp HHT--TCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCT
T ss_pred Hhh--cCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcc
Confidence 443 2446999999996421111000 0000 0
Q ss_pred ----------------------------------CCeEEecc------CCCCce-EEEEE--------------------
Q 014134 219 ----------------------------------NPLVLKSS------FNRPNL-FYEVR-------------------- 237 (430)
Q Consensus 219 ----------------------------------~~~~~~~~------~~~~~~-~~~~~-------------------- 237 (430)
....+... +..... .....
T Consensus 380 ~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 459 (968)
T 3dmq_A 380 QDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKS 459 (968)
T ss_dssp TCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSS
T ss_pred hhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhh
Confidence 00000000 000000 00000
Q ss_pred -----------------------ecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHc-CCCcceeecCCCC
Q 014134 238 -----------------------YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA-GGISCAAYHAGLN 293 (430)
Q Consensus 238 -----------------------~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~-~~~~~~~~hg~~~ 293 (430)
.......|...+.+++...++.++||||+++..++.+++.|.+ .|+++..+||+|+
T Consensus 460 ~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~ 539 (968)
T 3dmq_A 460 AEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMS 539 (968)
T ss_dssp GGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSC
T ss_pred hHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 0112245788889999887888999999999999999999995 5999999999999
Q ss_pred HHHHHHHHHHhhcCC--ceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCc
Q 014134 294 DKARSSVLDDWISSR--KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGM 364 (430)
Q Consensus 294 ~~~r~~~~~~f~~g~--~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~ 364 (430)
+.+|..+++.|++|+ ++|||||+++++|+|+|++++||++++|+++..|.||+||+||.|+.+.++++...
T Consensus 540 ~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~ 612 (968)
T 3dmq_A 540 IIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPY 612 (968)
T ss_dssp TTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEE
T ss_pred HHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEec
Confidence 999999999999998 99999999999999999999999999999999999999999999999877666433
No 53
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=2.4e-34 Score=286.56 Aligned_cols=287 Identities=15% Similarity=0.168 Sum_probs=197.6
Q ss_pred HHcCCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCC
Q 014134 50 VLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129 (430)
Q Consensus 50 l~~~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (430)
.+++++++++||||||||..++..+... ...+|++||++||.|+++.+.+.|..+....+.... .......
T Consensus 152 ~l~rk~vlv~apTGSGKT~~al~~l~~~-~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~--------iv~TpGr 222 (677)
T 3rc3_A 152 AMQRKIIFHSGPTNSGKTYHAIQKYFSA-KSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERV--------TVQPNGK 222 (677)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHS-SSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEE--------CCSTTCC
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhc-CCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeE--------EecCCCc
Confidence 3578899999999999999665555544 456999999999999999999988877766654322 0000011
Q ss_pred ceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCC--CCcEEEEEcCCCchh
Q 014134 130 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKV 207 (430)
Q Consensus 130 ~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~--~~~~i~~SAT~~~~~ 207 (430)
..++ +++|++.+. ....++++|+||+|++.+.+ +.. .+..+....+ ..+++++|||.+ .
T Consensus 223 ~~~i------l~~T~e~~~------l~~~v~lvVIDEaH~l~d~~--~g~---~~~~~l~~l~~~~i~il~~SAT~~--~ 283 (677)
T 3rc3_A 223 QASH------VSCTVEMCS------VTTPYEVAVIDEIQMIRDPA--RGW---AWTRALLGLCAEEVHLCGEPAAID--L 283 (677)
T ss_dssp CCSE------EEEEGGGCC------SSSCEEEEEECSGGGGGCTT--THH---HHHHHHHHCCEEEEEEEECGGGHH--H
T ss_pred ccce------eEecHhHhh------hcccCCEEEEecceecCCcc--chH---HHHHHHHccCccceEEEeccchHH--H
Confidence 1223 344443211 13457899999999998765 333 3333334333 667999999942 2
Q ss_pred HHHHHHHhCCCCCeEEeccCCCCceEEEEEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCccee
Q 014134 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAA 287 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~ 287 (430)
...+..... ....+.......... ..... ...+.... ...+|||++++.++.+++.|.+.+..+..
T Consensus 284 i~~l~~~~~--~~~~v~~~~r~~~l~--~~~~~---------l~~l~~~~-~g~iIf~~s~~~ie~la~~L~~~g~~v~~ 349 (677)
T 3rc3_A 284 VMELMYTTG--EEVEVRDYKRLTPIS--VLDHA---------LESLDNLR-PGDCIVCFSKNDIYSVSRQIEIRGLESAV 349 (677)
T ss_dssp HHHHHHHHT--CCEEEEECCCSSCEE--ECSSC---------CCSGGGCC-TTEEEECSSHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHHhcC--CceEEEEeeecchHH--HHHHH---------HHHHHhcC-CCCEEEEcCHHHHHHHHHHHHhcCCCeee
Confidence 333333332 222222111111111 10000 01112222 34588999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHhhc--CCceEEEEeccccccccccCceEEEEecC--------------CCCHHHHHHHhccCCC
Q 014134 288 YHAGLNDKARSSVLDDWIS--SRKQVVVATVAFGMGIDRKDVRLVCHFNI--------------PKSMEAFYQESGRAGR 351 (430)
Q Consensus 288 ~hg~~~~~~r~~~~~~f~~--g~~~vLv~T~~~~~Gidi~~~~~vi~~~~--------------p~s~~~~~q~~GR~~R 351 (430)
+||+|++++|..+++.|++ |+.+|||||+++++|+|+ ++++||+++. |.|..+|+||+||+||
T Consensus 350 lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR 428 (677)
T 3rc3_A 350 IYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGR 428 (677)
T ss_dssp ECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTC
T ss_pred eeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCC
Confidence 9999999999999999999 889999999999999999 7999999999 7899999999999999
Q ss_pred CCCC---ceEEEeeCccchHHHHHHHHhccCC
Q 014134 352 DQLP---SKSLLYYGMDDRRRMEFILSKNQSK 380 (430)
Q Consensus 352 ~g~~---g~~i~~~~~~~~~~~~~~~~~~~~~ 380 (430)
.|.. |.|+.+ ...+...++.++......
T Consensus 429 ~g~~g~~G~v~~l-~~~d~~~~~~~~~~~~~~ 459 (677)
T 3rc3_A 429 FSSRFKEGEVTTM-NHEDLSLLKEILKRPVDP 459 (677)
T ss_dssp TTSSCSSEEEEES-STTHHHHHHHHHHSCCCC
T ss_pred CCCCCCCEEEEEE-ecchHHHHHHHHhcCcch
Confidence 9965 554444 445666666776655443
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=4.3e-35 Score=288.26 Aligned_cols=298 Identities=14% Similarity=0.125 Sum_probs=204.9
Q ss_pred cchHHHHHHHHHHH----cCCCEEEEcCCCChHHHHhHHhhh---c--CCCeEEEEcchHHHHHHHHHHHHHcCcc--ee
Q 014134 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPAL---A--KPGIVLVVSPLIALMENQVIGLKEKGIA--GE 106 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~----~~~~~lv~a~tGsGKT~~~~~~~l---~--~~~~~lil~Pt~~L~~q~~~~~~~~~~~--~~ 106 (430)
+|+|+|.++++.+. .+++++++++||+|||++++..+. . ...++|||||+ .|+.||.+++.++... ..
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~~~~~v~ 115 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL-SVLKNWEEELSKFAPHLRFA 115 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS-TTHHHHHHHHHHHCTTSCEE
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccH-HHHHHHHHHHHHHCCCceEE
Confidence 69999999998874 578999999999999988764443 1 24689999995 6889999999997433 22
Q ss_pred EeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHH
Q 014134 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (430)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~ 186 (430)
...+.... ......++ +|+|++.+..... .....+++||+||||++.+.+. ....
T Consensus 116 ~~~g~~~~-----------~~~~~~~i------vi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~-------~~~~ 170 (500)
T 1z63_A 116 VFHEDRSK-----------IKLEDYDI------ILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQT-------KIFK 170 (500)
T ss_dssp ECSSSTTS-----------CCGGGSSE------EEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTS-------HHHH
T ss_pred EEecCchh-----------ccccCCcE------EEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhH-------HHHH
Confidence 22221100 01112233 7777776544333 3344589999999999976542 2233
Q ss_pred HHhhCCCCcEEEEEcCCCchhHHHHHHHhCCC----------------------------------CCeEEeccC-----
Q 014134 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQ----------------------------------NPLVLKSSF----- 227 (430)
Q Consensus 187 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~----- 227 (430)
....++..+.+++||||..+...+++..+... .+..++...
T Consensus 171 ~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~ 250 (500)
T 1z63_A 171 AVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAI 250 (500)
T ss_dssp HHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHH
T ss_pred HHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccch
Confidence 33445566799999999776544443322111 122222111
Q ss_pred --CCCceEEEEEecC--------------------------------------------------------cchhHHHHH
Q 014134 228 --NRPNLFYEVRYKD--------------------------------------------------------LLDDAYADL 249 (430)
Q Consensus 228 --~~~~~~~~~~~~~--------------------------------------------------------~~~~~~~~l 249 (430)
..+.......... ....|+..+
T Consensus 251 ~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l 330 (500)
T 1z63_A 251 INDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRT 330 (500)
T ss_dssp HTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHH
T ss_pred hhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHH
Confidence 1111111111111 012344445
Q ss_pred HHHHHhc--CCceEEEEeCccccHHHHHHHHHcC-CCcceeecCCCCHHHHHHHHHHhhcC-Cce-EEEEeccccccccc
Q 014134 250 CSVLKAN--GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISS-RKQ-VVVATVAFGMGIDR 324 (430)
Q Consensus 250 ~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~-~~~~~~~hg~~~~~~r~~~~~~f~~g-~~~-vLv~T~~~~~Gidi 324 (430)
.+++.+. .+.++||||++...++.+++.|... +..+..+||+++..+|..+++.|++| ..+ +|++|+++++|+|+
T Consensus 331 ~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl 410 (500)
T 1z63_A 331 MEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINL 410 (500)
T ss_dssp HHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCC
T ss_pred HHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCch
Confidence 5555542 5779999999999999999999885 89999999999999999999999988 555 79999999999999
Q ss_pred cCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEe
Q 014134 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (430)
Q Consensus 325 ~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~ 361 (430)
|.+++||++++|+|+..|.|++||++|.|+.+.+.++
T Consensus 411 ~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~ 447 (500)
T 1z63_A 411 TSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 447 (500)
T ss_dssp TTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEE
T ss_pred hhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEE
Confidence 9999999999999999999999999999988776554
No 55
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-33 Score=286.76 Aligned_cols=327 Identities=18% Similarity=0.169 Sum_probs=223.1
Q ss_pred ccchHHHHHHHHHHH----cCCCEEEEcCCCChHHHHhHHhhh------cCCCeEEEEcchHHHHHHHHHHHHHcCccee
Q 014134 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPAL------AKPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~----~~~~~lv~a~tGsGKT~~~~~~~l------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 106 (430)
.+|+|||.+++..+. .+++++++.+||+|||+.++..+. ....++||||| ..|+.||.+++.++.....
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 369999999999876 678999999999999987754442 23667999999 6788999999998753333
Q ss_pred EeCCCchHHHHHHHHhhh--h------cCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcH
Q 014134 107 FLSSTQTMQVKTKIYEDL--D------SGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (430)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~--~------~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~ 178 (430)
+................. . ......++ +|+|++.+...........+++||+||||++.+.+
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dv------vitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~---- 383 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNV------LLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAE---- 383 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSE------EEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSS----
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCE------EEecHHHHHhhHHHHhcCCcceeehhhhhhhcCch----
Confidence 332222222222211110 0 11122333 77777766665555555568999999999997644
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCCCC-------------------------------CeEEeccC
Q 014134 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN-------------------------------PLVLKSSF 227 (430)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~ 227 (430)
.........++....+++||||..+...+++..+.... +.+++...
T Consensus 384 ---s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k 460 (800)
T 3mwy_W 384 ---SSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLK 460 (800)
T ss_dssp ---SHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCG
T ss_pred ---hHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhH
Confidence 23333444455566899999997654444443332111 11111100
Q ss_pred -----CCCceEEEEEecCc-------------------------------------------------------------
Q 014134 228 -----NRPNLFYEVRYKDL------------------------------------------------------------- 241 (430)
Q Consensus 228 -----~~~~~~~~~~~~~~------------------------------------------------------------- 241 (430)
..+...........
T Consensus 461 ~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~ 540 (800)
T 3mwy_W 461 KDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDG 540 (800)
T ss_dssp GGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC---
T ss_pred HhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccc
Confidence 00100000000000
Q ss_pred -------------chhHHHHHHHHHHhc--CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhc
Q 014134 242 -------------LDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306 (430)
Q Consensus 242 -------------~~~~~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 306 (430)
...|+..+..++... .+.++|||+.....++.+.+.|...|+.+..+||+++..+|..+++.|++
T Consensus 541 ~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~ 620 (800)
T 3mwy_W 541 KMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNS 620 (800)
T ss_dssp -CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSS
T ss_pred cccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhC
Confidence 123455555666543 56799999999999999999999999999999999999999999999998
Q ss_pred CCc---eEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEe--eCcc--chHHHHHHHHhc
Q 014134 307 SRK---QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY--YGMD--DRRRMEFILSKN 377 (430)
Q Consensus 307 g~~---~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~--~~~~--~~~~~~~~~~~~ 377 (430)
+.. .+|++|.++++|+|++.+++||++|+|+|+..+.|++||++|.|+...+.++ +... |...+....++.
T Consensus 621 ~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~ 698 (800)
T 3mwy_W 621 PDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKM 698 (800)
T ss_dssp TTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHT
T ss_pred CCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHH
Confidence 654 4899999999999999999999999999999999999999999987766554 4444 444444444443
No 56
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.2e-32 Score=270.37 Aligned_cols=314 Identities=13% Similarity=0.113 Sum_probs=208.5
Q ss_pred cchHHHHHHHHHHH---------cCCCEEEEcCCCChHHHHhHHhhh---cC-------CCeEEEEcchHHHHHHHHHHH
Q 014134 38 QFRDKQLDAIQAVL---------SGRDCFCLMPTGGGKSMCYQIPAL---AK-------PGIVLVVSPLIALMENQVIGL 98 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~---------~~~~~lv~a~tGsGKT~~~~~~~l---~~-------~~~~lil~Pt~~L~~q~~~~~ 98 (430)
.|+|||.+++..+. .+.+.|++.+||+|||+.++..+. .. ..++|||||+ .|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 69999999999985 345789999999999988765442 22 2469999997 7889999999
Q ss_pred HHcCc---ceeEeCCCchHHHHHHHHhhhhcC--CCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCcccccc
Q 014134 99 KEKGI---AGEFLSSTQTMQVKTKIYEDLDSG--KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (430)
Q Consensus 99 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~ 173 (430)
.++.. .......+................ ....+ ++|+|++.+...........+++||+||||++.+.
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~ 207 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTP------ILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNS 207 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCC------EEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTT
T ss_pred HHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCc------EEEeeHHHHHhhHHHhhcCCccEEEEECceecCCh
Confidence 88622 122222222221111221111111 01122 37888887766555555567899999999999764
Q ss_pred CCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHHHHHHhCC------------------------------------
Q 014134 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL------------------------------------ 217 (430)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~------------------------------------ 217 (430)
. .........++....+++||||..+...+++..+..
T Consensus 208 ~-------~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~ 280 (644)
T 1z3i_X 208 D-------NQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAG 280 (644)
T ss_dssp C-------HHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHH
T ss_pred h-------hHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHH
Confidence 3 222222333456679999999976532111111000
Q ss_pred ----------CCCeEEecc------CCCCceEEEEEec------------------------------------------
Q 014134 218 ----------QNPLVLKSS------FNRPNLFYEVRYK------------------------------------------ 239 (430)
Q Consensus 218 ----------~~~~~~~~~------~~~~~~~~~~~~~------------------------------------------ 239 (430)
..+.+++.. ..++.....+...
T Consensus 281 ~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c 360 (644)
T 1z3i_X 281 EQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLC 360 (644)
T ss_dssp HHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHh
Confidence 000111100 0000000000000
Q ss_pred ----------------------------------CcchhHHHHHHHHH---HhcCCceEEEEeCccccHHHHHHHHHcCC
Q 014134 240 ----------------------------------DLLDDAYADLCSVL---KANGDTCAIVYCLERTTCDELSAYLSAGG 282 (430)
Q Consensus 240 ----------------------------------~~~~~~~~~l~~~l---~~~~~~~~iVf~~s~~~~~~l~~~l~~~~ 282 (430)
.....|+..+..++ ...++.++|||+++...++.+.+.|...|
T Consensus 361 ~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g 440 (644)
T 1z3i_X 361 NHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRR 440 (644)
T ss_dssp HCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCC
Confidence 00112333333333 33357899999999999999999999999
Q ss_pred CcceeecCCCCHHHHHHHHHHhhcCCc---eEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEE
Q 014134 283 ISCAAYHAGLNDKARSSVLDDWISSRK---QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 359 (430)
Q Consensus 283 ~~~~~~hg~~~~~~r~~~~~~f~~g~~---~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i 359 (430)
+.+..+||+++.++|..+++.|++|+. .+|++|+++++|+|++.+++||++|+|||+..+.|++||++|.|+...+.
T Consensus 441 ~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~ 520 (644)
T 1z3i_X 441 YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCY 520 (644)
T ss_dssp CCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceE
Confidence 999999999999999999999999875 48999999999999999999999999999999999999999999877655
Q ss_pred Ee--eCcc
Q 014134 360 LY--YGMD 365 (430)
Q Consensus 360 ~~--~~~~ 365 (430)
++ +...
T Consensus 521 v~~lv~~~ 528 (644)
T 1z3i_X 521 IYRLLSTG 528 (644)
T ss_dssp EEEEEETT
T ss_pred EEEEEECC
Confidence 54 4444
No 57
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.6e-30 Score=252.27 Aligned_cols=184 Identities=17% Similarity=0.166 Sum_probs=139.2
Q ss_pred cEEEEEcCCCchhHHHHHHHhCCCCCeEEeccCCCCceEEEEEecCcchhHHHHHHHHHHhc--CCceEEEEeCccccHH
Q 014134 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCD 272 (430)
Q Consensus 195 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~iVf~~s~~~~~ 272 (430)
++.+||||..... ..+...++ ...+.+........+............|+..+.+.+... .+.++||||+|++.++
T Consensus 411 kL~GMTGTa~te~-~Ef~~iY~-l~vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE 488 (822)
T 3jux_A 411 KLAGMTGTAKTEE-SEFVQVYG-MEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSE 488 (822)
T ss_dssp EEEEEESSCGGGH-HHHHHHSC-CCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHH
T ss_pred HHeEECCCCchHH-HHHHHHhC-CeEEEECCCCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHH
Confidence 5999999998754 44444443 333333222211222221122234567888888888753 5678999999999999
Q ss_pred HHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecccccccccc--------CceEEEEecCCCCHHHHHH
Q 014134 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK--------DVRLVCHFNIPKSMEAFYQ 344 (430)
Q Consensus 273 ~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~--------~~~~vi~~~~p~s~~~~~q 344 (430)
.++..|++.|+++..+||+..+.++..+..+++.| .|+|||++++||+|++ +..+||+++.|.|...|.|
T Consensus 489 ~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~q 566 (822)
T 3jux_A 489 LLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQ 566 (822)
T ss_dssp HHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHH
T ss_pred HHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHH
Confidence 99999999999999999996666666666666655 6999999999999998 6679999999999999999
Q ss_pred HhccCCCCCCCceEEEeeCccc-------hHHHHHHHHhccCCCC
Q 014134 345 ESGRAGRDQLPSKSLLYYGMDD-------RRRMEFILSKNQSKNS 382 (430)
Q Consensus 345 ~~GR~~R~g~~g~~i~~~~~~~-------~~~~~~~~~~~~~~~~ 382 (430)
|+||+||.|.+|.+++|++.+| .+.+..+++.++..+.
T Consensus 567 riGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~~~~ 611 (822)
T 3jux_A 567 LRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILKIEEG 611 (822)
T ss_dssp HHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSCCSS
T ss_pred hhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcCCCCC
Confidence 9999999999999999998876 2566677777765443
No 58
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=1.2e-30 Score=270.44 Aligned_cols=321 Identities=12% Similarity=0.080 Sum_probs=205.5
Q ss_pred CChHHHHHHHHHHhcC-------CccchHHHHHHHHHHHc--------------CCCEEEEcCCCChHHHHhHHhh--hc
Q 014134 20 LHEKEALVKLLRWHFG-------HAQFRDKQLDAIQAVLS--------------GRDCFCLMPTGGGKSMCYQIPA--LA 76 (430)
Q Consensus 20 ~~~~~~~~~~l~~~~g-------~~~~~~~Q~~~~~~l~~--------------~~~~lv~a~tGsGKT~~~~~~~--l~ 76 (430)
+...+.+...+.. |- ...||++|.+|++.++. +++++++++||||||++++..+ +.
T Consensus 247 ~~~~~~ll~~l~~-f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~ 325 (1038)
T 2w00_A 247 CFQKHTLLNVLVN-YSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLAT 325 (1038)
T ss_dssp TTSHHHHHHHHHH-SEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHT
T ss_pred hhchHHHHHHHHh-heeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHH
Confidence 3344556666654 42 23599999999999875 3689999999999999874322 22
Q ss_pred ---CCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh
Q 014134 77 ---KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153 (430)
Q Consensus 77 ---~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~ 153 (430)
...++|||+|+++|+.|+.+.+..++... + ...... ......+......+ +|+||+++......
T Consensus 326 ~~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~~-v-~~~~s~---~~l~~~L~~~~~~I--------iVtTiqkl~~~l~~ 392 (1038)
T 2w00_A 326 ELDFIDKVFFVVDRKDLDYQTMKEYQRFSPDS-V-NGSENT---AGLKRNLDKDDNKI--------IVTTIQKLNNLMKA 392 (1038)
T ss_dssp TCTTCCEEEEEECGGGCCHHHHHHHHTTSTTC-S-SSSCCC---HHHHHHHHCSSCCE--------EEEEHHHHHHHHHH
T ss_pred hcCCCceEEEEeCcHHHHHHHHHHHHHhcccc-c-ccccCH---HHHHHHhcCCCCCE--------EEEEHHHHHHHHhc
Confidence 13589999999999999999999875431 1 111111 11122222222233 89999988876542
Q ss_pred h----hcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhH----HHHHHHhCC--------
Q 014134 154 H----SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ----KDVMESLCL-------- 217 (430)
Q Consensus 154 ~----~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~----~~~~~~~~~-------- 217 (430)
. ......+||+||||++... .....+...+|+.++++|||||..... ......++.
T Consensus 393 ~~~~~~~~~~~lvIiDEAHrs~~~--------~~~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~ 464 (1038)
T 2w00_A 393 ESDLPVYNQQVVFIFDECHRSQFG--------EAQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVIT 464 (1038)
T ss_dssp CCCCGGGGSCEEEEEESCCTTHHH--------HHHHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHH
T ss_pred ccchhccccccEEEEEccchhcch--------HHHHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHH
Confidence 1 3446789999999996531 223556778889999999999985321 011111111
Q ss_pred -------CCCeEEeccCCCCceE---EEEE----------ecCcchhHHHHHHHHH-H---hc--------CCceEEEEe
Q 014134 218 -------QNPLVLKSSFNRPNLF---YEVR----------YKDLLDDAYADLCSVL-K---AN--------GDTCAIVYC 265 (430)
Q Consensus 218 -------~~~~~~~~~~~~~~~~---~~~~----------~~~~~~~~~~~l~~~l-~---~~--------~~~~~iVf~ 265 (430)
..+..+......+... .... ..-....++..+...+ . .. .+.++||||
T Consensus 465 ~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~ 544 (1038)
T 2w00_A 465 DAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAV 544 (1038)
T ss_dssp HHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEE
T ss_pred HHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEE
Confidence 1111110000000000 0000 0000122233333222 2 11 345899999
Q ss_pred CccccHHHHHHHHHcCC------------Ccc-eeecCC----------C----------CH------------------
Q 014134 266 LERTTCDELSAYLSAGG------------ISC-AAYHAG----------L----------ND------------------ 294 (430)
Q Consensus 266 ~s~~~~~~l~~~l~~~~------------~~~-~~~hg~----------~----------~~------------------ 294 (430)
+|+..|..+++.|.+.+ ..+ .++||+ + ++
T Consensus 545 ~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~ 624 (1038)
T 2w00_A 545 SSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFK 624 (1038)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhc
Confidence 99999999999997653 444 455542 2 22
Q ss_pred -----------HHHHHHHHHhhcCCceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCC----ceEE
Q 014134 295 -----------KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP----SKSL 359 (430)
Q Consensus 295 -----------~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~----g~~i 359 (430)
..|..++++|++|+++|||+|+++.+|+|+|.+ .++++|.|.+...|+|++||++|.+.. |.++
T Consensus 625 ~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IV 703 (1038)
T 2w00_A 625 TNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIV 703 (1038)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEE
T ss_pred ccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEE
Confidence 147889999999999999999999999999999 577899999999999999999998753 5566
Q ss_pred EeeC
Q 014134 360 LYYG 363 (430)
Q Consensus 360 ~~~~ 363 (430)
.|..
T Consensus 704 df~~ 707 (1038)
T 2w00_A 704 TFRD 707 (1038)
T ss_dssp ESSC
T ss_pred Eccc
Confidence 5554
No 59
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.97 E-value=9e-29 Score=248.34 Aligned_cols=129 Identities=22% Similarity=0.280 Sum_probs=113.1
Q ss_pred HHHHHHHHHHh--cCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccc
Q 014134 245 AYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (430)
Q Consensus 245 ~~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 322 (430)
+...+...+.. ..+.++||||+|+..++.+++.|.+.|+.+..+||++++.+|..+++.|++|+++|||||+++++|+
T Consensus 424 ~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~Gl 503 (664)
T 1c4o_A 424 QILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGL 503 (664)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTC
T ss_pred hHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCc
Confidence 34444444432 2467999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCceEEEEecC-----CCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHH
Q 014134 323 DRKDVRLVCHFNI-----PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (430)
Q Consensus 323 di~~~~~vi~~~~-----p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~ 374 (430)
|+|++++||+++. |.|..+|+||+||+||.+ .|.+++++++.+....+.+.
T Consensus 504 Dip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 504 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp CCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred cCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 9999999999997 899999999999999984 89999999887665444443
No 60
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.96 E-value=2.5e-28 Score=216.53 Aligned_cols=193 Identities=19% Similarity=0.239 Sum_probs=148.9
Q ss_pred cccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc-----------CCCe
Q 014134 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----------KPGI 80 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~-----------~~~~ 80 (430)
.+...|+++++++.+.+.+.+ +||.+|+++|.++++.+++|++++++||||+|||++|++|++. .+.+
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~ 104 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIAR-QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI 104 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCS
T ss_pred CccCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCE
Confidence 345678889999999999998 8999999999999999999999999999999999999999873 3678
Q ss_pred EEEEcchHHHHHHHHHHHHHc----CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh--
Q 014134 81 VLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH-- 154 (430)
Q Consensus 81 ~lil~Pt~~L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~-- 154 (430)
+||++||++|+.|+.+.+..+ +.......++............ . .+ ++|+||+++.++....
T Consensus 105 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~--~~------I~v~Tp~~l~~~l~~~~~ 172 (242)
T 3fe2_A 105 CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----G--VE------ICIATPGRLIDFLECGKT 172 (242)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----C--CS------EEEECHHHHHHHHHHTSC
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----C--CC------EEEECHHHHHHHHHcCCC
Confidence 999999999999999988875 4555555544443322221111 1 22 2999999988776533
Q ss_pred hcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhC-CCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEe
Q 014134 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (430)
Q Consensus 155 ~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 224 (430)
....++++|+||||++.+++ +...+. .+.... ++.|+++||||+++.+......++ .++..+.
T Consensus 173 ~~~~~~~lViDEah~l~~~~--~~~~~~---~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l--~~~~~i~ 236 (242)
T 3fe2_A 173 NLRRTTYLVLDEADRMLDMG--FEPQIR---KIVDQIRPDRQTLMWSATWPKEVRQLAEDFL--KDYIHIN 236 (242)
T ss_dssp CCTTCCEEEETTHHHHHHTT--CHHHHH---HHHTTSCSSCEEEEEESCCCHHHHHHHHHHC--SSCEEEE
T ss_pred CcccccEEEEeCHHHHhhhC--cHHHHH---HHHHhCCccceEEEEEeecCHHHHHHHHHHC--CCCEEEE
Confidence 35678999999999999887 554444 444554 478999999999998877666655 3555444
No 61
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.96 E-value=4.3e-29 Score=223.69 Aligned_cols=185 Identities=25% Similarity=0.307 Sum_probs=138.6
Q ss_pred ccccCCCCC--hHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc----------CCCe
Q 014134 13 QTQKNKPLH--EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----------KPGI 80 (430)
Q Consensus 13 ~~~~~~~~~--~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~----------~~~~ 80 (430)
....|+.++ +++.+.+.|.+ +||.+|+++|.++++.++.+++++++||||+|||++|+++++. .+.+
T Consensus 50 ~~~~f~~l~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 128 (262)
T 3ly5_A 50 EDTSFASLCNLVNENTLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTG 128 (262)
T ss_dssp GGGCC-----CCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCC
T ss_pred ccCChhHhccccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCce
Confidence 344566665 89999999998 8999999999999999999999999999999999999999873 4678
Q ss_pred EEEEcchHHHHHHHHHHHHHcC----cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh---
Q 014134 81 VLVVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--- 153 (430)
Q Consensus 81 ~lil~Pt~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~--- 153 (430)
+||++||++|+.|+++.+++++ .......++......... +.. ..++ +|+||+++......
T Consensus 129 ~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~-~~~I--------iv~Tp~~l~~~~~~~~~ 196 (262)
T 3ly5_A 129 VLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGN-GINI--------IVATPGRLLDHMQNTPG 196 (262)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHH-CCSE--------EEECHHHHHHHHHHCTT
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcC-CCCE--------EEEcHHHHHHHHHccCC
Confidence 9999999999999999998853 333344443332222111 111 1222 99999988876543
Q ss_pred hhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHh
Q 014134 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESL 215 (430)
Q Consensus 154 ~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~ 215 (430)
.....++++|+||||++.++| +...+ ..+....+ ..|+++||||+++.+.......+
T Consensus 197 ~~~~~l~~lViDEah~l~~~~--~~~~l---~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l 254 (262)
T 3ly5_A 197 FMYKNLQCLVIDEADRILDVG--FEEEL---KQIIKLLPTRRQTMLFSATQTRKVEDLARISL 254 (262)
T ss_dssp CCCTTCCEEEECSHHHHHHTT--CHHHH---HHHHHHSCSSSEEEEECSSCCHHHHHHHHHHC
T ss_pred cccccCCEEEEcChHHHhhhh--HHHHH---HHHHHhCCCCCeEEEEEecCCHHHHHHHHHHc
Confidence 245678999999999999987 55444 44455554 67899999999998877655544
No 62
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.96 E-value=6.2e-29 Score=217.07 Aligned_cols=192 Identities=17% Similarity=0.245 Sum_probs=144.7
Q ss_pred ccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC------CCeEEEEcchH
Q 014134 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~------~~~~lil~Pt~ 88 (430)
..|+++++++.+.+.+.+ +||.+|+++|.++++.+++++++++++|||+|||++|+++++.. +.+++|++||+
T Consensus 4 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKT-LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTR 82 (219)
T ss_dssp CCGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcH
Confidence 468889999999999998 89999999999999999999999999999999999999988743 56899999999
Q ss_pred HHHHHHHHHHHHcC--------cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh--hcCC
Q 014134 89 ALMENQVIGLKEKG--------IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SRGL 158 (430)
Q Consensus 89 ~L~~q~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~--~~~~ 158 (430)
+|+.|+.+.+.+++ .......++.... .......... +++|+||+++..+.... ....
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~------~Iiv~Tp~~l~~~l~~~~~~~~~ 150 (219)
T 1q0u_A 83 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQ------KALEKLNVQP------HIVIGTPGRINDFIREQALDVHT 150 (219)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHH------HTTCCCSSCC------SEEEECHHHHHHHHHTTCCCGGG
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHH------HHHHHcCCCC------CEEEeCHHHHHHHHHcCCCCcCc
Confidence 99999999988752 3333333332211 1111111122 23899999888776532 3456
Q ss_pred ccEEEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEecc
Q 014134 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS 226 (430)
Q Consensus 159 ~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 226 (430)
++++|+||||++.+++ +. ..+..+...++ +.|++++|||+++.+...+..++ .+|..+...
T Consensus 151 ~~~lViDEah~~~~~~--~~---~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~--~~p~~~~~~ 212 (219)
T 1q0u_A 151 AHILVVDEADLMLDMG--FI---TDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYM--ENPTFVHVL 212 (219)
T ss_dssp CCEEEECSHHHHHHTT--CH---HHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHC--SSCEEEECC
T ss_pred ceEEEEcCchHHhhhC--hH---HHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHc--CCCeEEEee
Confidence 8999999999998877 44 44455555555 68899999999998877665554 455555443
No 63
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=216.29 Aligned_cols=185 Identities=22% Similarity=0.274 Sum_probs=138.2
Q ss_pred ccccCCC-CChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc------------CCC
Q 014134 13 QTQKNKP-LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------------KPG 79 (430)
Q Consensus 13 ~~~~~~~-~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~------------~~~ 79 (430)
+...|++ +++++.+.+.|.+ +||.+|+++|.++++.+++|++++++||||+|||++|+++++. .+.
T Consensus 17 p~~~f~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~ 95 (228)
T 3iuy_A 17 PTCRFKDAFQQYPDLLKSIIR-VGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGP 95 (228)
T ss_dssp CCCSHHHHHTTCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCC
T ss_pred ChhhHhhhhccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCC
Confidence 4455666 7899999999998 7999999999999999999999999999999999999998874 567
Q ss_pred eEEEEcchHHHHHHHHHHHHHcC---cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh--
Q 014134 80 IVLVVSPLIALMENQVIGLKEKG---IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH-- 154 (430)
Q Consensus 80 ~~lil~Pt~~L~~q~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~-- 154 (430)
++||++||++|+.|+.+.+..++ .......++....... .... .. . +++|+||+++..+....
T Consensus 96 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~--~------~iiv~Tp~~l~~~~~~~~~ 163 (228)
T 3iuy_A 96 GMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQI---EDIS-KG--V------DIIIATPGRLNDLQMNNSV 163 (228)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CH---HHHH-SC--C------SEEEECHHHHHHHHHTTCC
T ss_pred cEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHH---HHhc-CC--C------CEEEECHHHHHHHHHcCCc
Confidence 89999999999999999999863 3333333322211111 1111 11 2 23899999888775533
Q ss_pred hcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhC-CCCcEEEEEcCCCchhHHHHHHHh
Q 014134 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (430)
Q Consensus 155 ~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~ 215 (430)
....++++|+||||++.+++ +...+..+ .... ++.|++++|||+++.+......++
T Consensus 164 ~~~~~~~lViDEah~~~~~~--~~~~~~~i---~~~~~~~~~~l~~SAT~~~~~~~~~~~~l 220 (228)
T 3iuy_A 164 NLRSITYLVIDEADKMLDME--FEPQIRKI---LLDVRPDRQTVMTSATWPDTVRQLALSYL 220 (228)
T ss_dssp CCTTCCEEEECCHHHHHHTT--CHHHHHHH---HHHSCSSCEEEEEESCCCHHHHHHHHTTC
T ss_pred CcccceEEEEECHHHHhccc--hHHHHHHH---HHhCCcCCeEEEEEeeCCHHHHHHHHHHC
Confidence 35668999999999999877 66555444 3444 478999999999998877554433
No 64
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=1.6e-28 Score=212.53 Aligned_cols=183 Identities=23% Similarity=0.223 Sum_probs=140.7
Q ss_pred ccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC------CCeEEEEcchH
Q 014134 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~------~~~~lil~Pt~ 88 (430)
..|+++++++.+.+.|.+ +||.+|+++|.++++.+++++++++++|||+|||++|+++++.. +.+++|++|++
T Consensus 3 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 81 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFE-MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTR 81 (206)
T ss_dssp SSGGGSCCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcH
Confidence 468889999999999998 89999999999999999999999999999999999999888742 46899999999
Q ss_pred HHHHHHHHHHHHcC-----cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh--hcCCccE
Q 014134 89 ALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SRGLLNL 161 (430)
Q Consensus 89 ~L~~q~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~--~~~~~~~ 161 (430)
+|+.|+.+.+..+. .......++....... ... ....++ +|+||+++....... ....+++
T Consensus 82 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~---~~~~~i------~v~T~~~l~~~~~~~~~~~~~~~~ 149 (206)
T 1vec_A 82 ELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI---MRL---DDTVHV------VIATPGRILDLIKKGVAKVDHVQM 149 (206)
T ss_dssp HHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHH---HHT---TSCCSE------EEECHHHHHHHHHTTCSCCTTCCE
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHH---Hhc---CCCCCE------EEeCHHHHHHHHHcCCcCcccCCE
Confidence 99999999998853 3333344333322111 111 112223 899999887775532 3567899
Q ss_pred EEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHh
Q 014134 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESL 215 (430)
Q Consensus 162 lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~ 215 (430)
+|+||||++.+.+ +.. .+..+....+ +.|++++|||+++.....+..++
T Consensus 150 lViDEah~~~~~~--~~~---~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l 199 (206)
T 1vec_A 150 IVLDEADKLLSQD--FVQ---IMEDIILTLPKNRQILLYSATFPLSVQKFMNSHL 199 (206)
T ss_dssp EEEETHHHHTSTT--THH---HHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHC
T ss_pred EEEEChHHhHhhC--cHH---HHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHc
Confidence 9999999998765 544 4444555555 78999999999998877666655
No 65
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=7.6e-28 Score=199.56 Aligned_cols=152 Identities=21% Similarity=0.359 Sum_probs=138.2
Q ss_pred CCCceEEEEEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcC
Q 014134 228 NRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307 (430)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 307 (430)
..+++.+.+.... ...|...|.+++...+++++||||++++.++.+++.|.+.|+.+..+||++++.+|..+++.|++|
T Consensus 6 ~~~~i~~~~~~~~-~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 6 TTRNIEHAVIQVR-EENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp CCCCEEEEEEECC-GGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcccceEEEEECC-hHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 3444555544443 467889999999887888999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCC
Q 014134 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (430)
Q Consensus 308 ~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~ 380 (430)
+.+|||||+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.+++|+.+.+...++.+.+..+..
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 157 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFE 157 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSC
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998776544
No 66
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.96 E-value=1.5e-27 Score=239.34 Aligned_cols=128 Identities=22% Similarity=0.328 Sum_probs=113.2
Q ss_pred HHHHHHHHHHh--cCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccc
Q 014134 245 AYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (430)
Q Consensus 245 ~~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 322 (430)
....+...+.. ..+.++||||+|+..++.+++.|.+.|+.+..+||++++.+|..+++.|++|+++|||||+++++|+
T Consensus 430 ~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~Gl 509 (661)
T 2d7d_A 430 QIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGL 509 (661)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTC
T ss_pred hHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCc
Confidence 34444444433 2467999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCceEEEEecC-----CCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHH
Q 014134 323 DRKDVRLVCHFNI-----PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (430)
Q Consensus 323 di~~~~~vi~~~~-----p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~ 373 (430)
|+|++++||+++. |.|..+|+||+||+||. ..|.+++++++.+....+.+
T Consensus 510 Dip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 510 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp CCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHH
T ss_pred ccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHH
Confidence 9999999999997 99999999999999998 78999999988766544443
No 67
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.96 E-value=7.8e-28 Score=212.67 Aligned_cols=192 Identities=21% Similarity=0.290 Sum_probs=144.6
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc----------CCCeEE
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----------KPGIVL 82 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~----------~~~~~l 82 (430)
....|+++++++.+.+.|.+ +||..|+++|.++++.+++++++++++|||+|||++|+++++. .+.++|
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~l 101 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQE-AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVL 101 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred ccCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEE
Confidence 34568899999999999998 8999999999999999999999999999999999999988863 367899
Q ss_pred EEcchHHHHHHHHHHHHHcC----cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh---hh
Q 014134 83 VVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI---HS 155 (430)
Q Consensus 83 il~Pt~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~---~~ 155 (430)
|++||++|+.|+.+.++.++ .......++......... . .. .++ +|+||+++...... ..
T Consensus 102 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~--~~--~~i------iv~Tp~~l~~~l~~~~~~~ 168 (236)
T 2pl3_A 102 IISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAER---I--NN--INI------LVCTPGRLLQHMDETVSFH 168 (236)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHH---H--TT--CSE------EEECHHHHHHHHHHCSSCC
T ss_pred EEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHh---C--CC--CCE------EEECHHHHHHHHHhcCCcc
Confidence 99999999999999999865 334444433322221111 1 12 222 89999988776543 33
Q ss_pred cCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEec
Q 014134 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS 225 (430)
Q Consensus 156 ~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 225 (430)
...++++|+||||++.+++ +. ..+..+...++ +.|+++||||+++.+...... ...+|..+..
T Consensus 169 ~~~~~~lViDEah~~~~~~--~~---~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~--~~~~p~~i~~ 232 (236)
T 2pl3_A 169 ATDLQMLVLDEADRILDMG--FA---DTMNAVIENLPKKRQTLLFSATQTKSVKDLARL--SLKNPEYVWV 232 (236)
T ss_dssp CTTCCEEEETTHHHHHHTT--TH---HHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHH--SCSSCEEEEC
T ss_pred cccccEEEEeChHHHhcCC--cH---HHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHH--hCCCCEEEEe
Confidence 5678999999999998877 44 34455555555 678999999999987663333 3456655543
No 68
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=1e-27 Score=201.30 Aligned_cols=152 Identities=21% Similarity=0.328 Sum_probs=136.1
Q ss_pred CceEEEEEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCc
Q 014134 230 PNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309 (430)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 309 (430)
.++.+.+...+....|...+.++++..+++++||||+++..++.+++.|.+.+..+..+||++++.+|..+++.|++|+.
T Consensus 6 ~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~ 85 (175)
T 2rb4_A 6 NNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKE 85 (175)
T ss_dssp CCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSC
T ss_pred CCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 45666666666566799999999988888899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccccccccccCceEEEEecCC------CCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCC
Q 014134 310 QVVVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381 (430)
Q Consensus 310 ~vLv~T~~~~~Gidi~~~~~vi~~~~p------~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~ 381 (430)
+|||||+++++|+|+|++++||++++| .+..+|+||+||+||.|+.|.+++++.+.+...+..+.+.++...
T Consensus 86 ~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 86 KVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSI 163 (175)
T ss_dssp SEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred eEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999 899999999999999999999999999999999988888776543
No 69
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.95 E-value=1.9e-28 Score=216.56 Aligned_cols=192 Identities=19% Similarity=0.259 Sum_probs=141.5
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc------CCCeEEEEcc
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSP 86 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~------~~~~~lil~P 86 (430)
....|+++++++.+.+.|.. +||..|+++|.++++.++++++++++||||+|||++|+++++. .+.++||++|
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 106 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAP 106 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred ccCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEEC
Confidence 45678999999999999997 8999999999999999999999999999999999999998874 3568999999
Q ss_pred hHHHHHHHHHHHHHcCc----ceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh--hhcCCcc
Q 014134 87 LIALMENQVIGLKEKGI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLN 160 (430)
Q Consensus 87 t~~L~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~--~~~~~~~ 160 (430)
|++|+.|+.+.++.++. ......++.... .....+.... ..++|+||+++..+... .....++
T Consensus 107 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~--------~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 175 (237)
T 3bor_A 107 TRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEA--------PHIVVGTPGRVFDMLNRRYLSPKWIK 175 (237)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CC--------CSEEEECHHHHHHHHHTTSSCSTTCC
T ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCC--------CCEEEECHHHHHHHHHhCCcCcccCc
Confidence 99999999999988642 222222221111 0111111111 23389999988877654 3356689
Q ss_pred EEEEecCccccccCCCcHHHHHHHHHHHhhC-CCCcEEEEEcCCCchhHHHHHHHhCCCCCeEE
Q 014134 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (430)
Q Consensus 161 ~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 223 (430)
++|+||||++.+++ +... +..+.... ++.|++++|||+++.+......++. ++..+
T Consensus 176 ~lViDEah~~~~~~--~~~~---l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~--~p~~i 232 (237)
T 3bor_A 176 MFVLDEADEMLSRG--FKDQ---IYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMR--DPIRI 232 (237)
T ss_dssp EEEEESHHHHHHTT--CHHH---HHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCS--SCEEE
T ss_pred EEEECCchHhhccC--cHHH---HHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCC--CCEEE
Confidence 99999999998877 4443 34444444 3788999999999988776665553 45544
No 70
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.95 E-value=8.6e-28 Score=213.56 Aligned_cols=191 Identities=25% Similarity=0.338 Sum_probs=146.2
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc------CCCeEEEEcc
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSP 86 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~------~~~~~lil~P 86 (430)
....|+.+++++.+.+.|.+ +||.+|+++|.++++.++++++++++||||+|||++|+++++. .+.++||++|
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~P 119 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQ-LGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTP 119 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECS
T ss_pred ccCCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeC
Confidence 45678999999999999998 8999999999999999999999999999999999999988874 2567999999
Q ss_pred hHHHHHHHHHHHHHc----CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh---hhcCCc
Q 014134 87 LIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI---HSRGLL 159 (430)
Q Consensus 87 t~~L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~---~~~~~~ 159 (430)
|++|+.|+.+.++.+ +.......++......... . ....++ +|+||+++.++... .....+
T Consensus 120 tr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~I--------~v~Tp~~l~~~l~~~~~~~l~~~ 187 (249)
T 3ber_A 120 TRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA---L-AKKPHI--------IIATPGRLIDHLENTKGFNLRAL 187 (249)
T ss_dssp SHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHH---H-HTCCSE--------EEECHHHHHHHHHHSTTCCCTTC
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHH---h-cCCCCE--------EEECHHHHHHHHHcCCCcCcccc
Confidence 999999999998886 4555555544433222111 1 112222 89999988777553 245678
Q ss_pred cEEEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEE
Q 014134 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (430)
Q Consensus 160 ~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 223 (430)
+++|+||||++.+++ +...+ ..+....+ +.|+++||||+++.+......++ .++..+
T Consensus 188 ~~lViDEah~l~~~~--~~~~l---~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l--~~p~~i 245 (249)
T 3ber_A 188 KYLVMDEADRILNMD--FETEV---DKILKVIPRDRKTFLFSATMTKKVQKLQRAAL--KNPVKC 245 (249)
T ss_dssp CEEEECSHHHHHHTT--CHHHH---HHHHHSSCSSSEEEEEESSCCHHHHHHHHHHC--SSCEEE
T ss_pred CEEEEcChhhhhccC--hHHHH---HHHHHhCCCCCeEEEEeccCCHHHHHHHHHHC--CCCEEE
Confidence 999999999998876 55444 44455554 78899999999998877555544 455544
No 71
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.95 E-value=1.1e-27 Score=210.76 Aligned_cols=192 Identities=19% Similarity=0.269 Sum_probs=143.1
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc------CCCeEEEEcc
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSP 86 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~------~~~~~lil~P 86 (430)
+...|+.+++++.+.+.|.+ +||.+|+++|.++++.+++++++++++|||+|||++|+++++. .+.++||++|
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 100 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRA-AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAP 100 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CCCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 45678899999999999998 8999999999999999999999999999999999999988863 2468999999
Q ss_pred hHHHHHHHHHHHHHcC-----cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh--hcCCc
Q 014134 87 LIALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SRGLL 159 (430)
Q Consensus 87 t~~L~~q~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~--~~~~~ 159 (430)
|++|+.|+.+.++.++ .......++......... . .. . +++|+||+++..+.... ....+
T Consensus 101 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~--~~--~------~Iiv~Tp~~l~~~~~~~~~~~~~~ 167 (230)
T 2oxc_A 101 TREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTR---L--KK--C------HIAVGSPGRIKQLIELDYLNPGSI 167 (230)
T ss_dssp SHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH---T--TS--C------SEEEECHHHHHHHHHTTSSCGGGC
T ss_pred CHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHh---c--cC--C------CEEEECHHHHHHHHhcCCcccccC
Confidence 9999999999998863 334444443332222111 1 11 2 23899999888876532 34568
Q ss_pred cEEEEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEe
Q 014134 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (430)
Q Consensus 160 ~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 224 (430)
+++|+||||++.++|. +... +..+...++ +.|++++|||+++.....+..+ ..++..+.
T Consensus 168 ~~lViDEah~~~~~~~-~~~~---~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~--~~~p~~i~ 227 (230)
T 2oxc_A 168 RLFILDEADKLLEEGS-FQEQ---INWIYSSLPASKQMLAVSATYPEFLANALTKY--MRDPTFVR 227 (230)
T ss_dssp CEEEESSHHHHHSTTS-SHHH---HHHHHHHSCSSCEEEEEESCCCHHHHHHHTTT--CSSCEEEC
T ss_pred CEEEeCCchHhhcCcc-hHHH---HHHHHHhCCCCCeEEEEEeccCHHHHHHHHHH--cCCCeEEE
Confidence 8999999999988762 4444 444555555 7789999999998866644433 34555443
No 72
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.95 E-value=2.6e-28 Score=222.55 Aligned_cols=189 Identities=18% Similarity=0.223 Sum_probs=142.6
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcC--CCEEEEcCCCChHHHHhHHhhhcC------CCeEEEE
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLVV 84 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~--~~~lv~a~tGsGKT~~~~~~~l~~------~~~~lil 84 (430)
....|+.+++++.+.+.|.. +||.+|+++|.+++|.++.+ +|++++||||||||++|++|+++. .+++||+
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil 168 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred CcCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEE
Confidence 45678889999999999998 89999999999999999987 899999999999999999998742 4589999
Q ss_pred cchHHHHHHHHHHHHHcCc-----ceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh---hhc
Q 014134 85 SPLIALMENQVIGLKEKGI-----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI---HSR 156 (430)
Q Consensus 85 ~Pt~~L~~q~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~---~~~ 156 (430)
+||++|+.|+++.+..++. ......++.... ... .. ...++|+||+++.++... ...
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~--~~------~~~IlV~TP~~l~~~l~~~~~~~l 233 (300)
T 3fmo_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQ--KI------SEQIVIGTPGTVLDWCSKLKFIDP 233 (300)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCC-------TTC--CC------CCSEEEECHHHHHHHHTTTCCCCG
T ss_pred cCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHh-------hhh--cC------CCCEEEECHHHHHHHHHhcCCCCh
Confidence 9999999999999888642 222222221110 000 11 123399999998887743 346
Q ss_pred CCccEEEEecCccccc-cCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEe
Q 014134 157 GLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (430)
Q Consensus 157 ~~~~~lViDE~h~~~~-~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 224 (430)
..+++||+||||++.+ .+ +...+ ..+....+ +.|+++||||+++.+......++ .+|..+.
T Consensus 234 ~~l~~lVlDEad~l~~~~~--~~~~~---~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l--~~p~~i~ 296 (300)
T 3fmo_B 234 KKIKVFVLDEADVMIATQG--HQDQS---IRIQRMLPRNCQMLLFSATFEDSVWKFAQKVV--PDPNVIK 296 (300)
T ss_dssp GGCSEEEETTHHHHHHSTT--HHHHH---HHHHTTSCTTCEEEEEESCCCHHHHHHHHHHS--SSCEEEE
T ss_pred hhceEEEEeCHHHHhhccC--cHHHH---HHHHHhCCCCCEEEEEeccCCHHHHHHHHHHC--CCCeEEE
Confidence 6799999999999987 45 44433 44445444 68999999999999887655554 4555443
No 73
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=5.8e-27 Score=204.81 Aligned_cols=190 Identities=16% Similarity=0.250 Sum_probs=143.1
Q ss_pred cccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC------CCeEEEEcch
Q 014134 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~------~~~~lil~Pt 87 (430)
...|+++++++.+.+.|.+ +||.+|+++|.++++.+++++++++++|||+|||++|+++++.. ..+++|++|+
T Consensus 13 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt 91 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 91 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHH-TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred CCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCC
Confidence 4569999999999999998 89999999999999999999999999999999999999988743 4589999999
Q ss_pred HHHHHHHHHHHHHc-----CcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh--hcCCcc
Q 014134 88 IALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SRGLLN 160 (430)
Q Consensus 88 ~~L~~q~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~--~~~~~~ 160 (430)
++|+.|+.+.++++ +.......++........ .+.....++ +|+||+++..+.... ....++
T Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i--------~v~T~~~l~~~~~~~~~~~~~~~ 160 (220)
T 1t6n_A 92 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHI--------VVGTPGRILALARNKSLNLKHIK 160 (220)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSE--------EEECHHHHHHHHHTTSSCCTTCC
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCE--------EEeCHHHHHHHHHhCCCCcccCC
Confidence 99999999999886 445555554443322221 112222223 899999888775543 356789
Q ss_pred EEEEecCcccccc-CCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeE
Q 014134 161 LVAIDEAHCISSW-GHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLV 222 (430)
Q Consensus 161 ~lViDE~h~~~~~-~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 222 (430)
++|+||||++.+. + +. ..+..+....+ +.|++++|||+++........++ .+|..
T Consensus 161 ~lViDEah~~~~~~~--~~---~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~p~~ 217 (220)
T 1t6n_A 161 HFILDECDKMLEQLD--MR---RDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFM--QDPME 217 (220)
T ss_dssp EEEEESHHHHHSSHH--HH---HHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTC--SSCEE
T ss_pred EEEEcCHHHHhcccC--cH---HHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHc--CCCeE
Confidence 9999999998763 3 33 34444555555 78899999999998877444433 44443
No 74
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=5.6e-28 Score=200.88 Aligned_cols=149 Identities=19% Similarity=0.307 Sum_probs=130.8
Q ss_pred EEEEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEE
Q 014134 234 YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (430)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv 313 (430)
+.+........|...+.+++...+++++||||++++.++.+++.|.+.+..+..+||++++.+|..+++.|++|+.+|||
T Consensus 6 ~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 85 (165)
T 1fuk_A 6 QFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILI 85 (165)
T ss_dssp EEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEE
T ss_pred EEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEE
Confidence 33333333445899999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCCC
Q 014134 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382 (430)
Q Consensus 314 ~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~ 382 (430)
||+++++|+|+|++++||++++|+++.+|+||+||+||.|+.|.+++++.+.+...+..+.+..+....
T Consensus 86 ~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (165)
T 1fuk_A 86 STDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIE 154 (165)
T ss_dssp EEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCE
T ss_pred EcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCcc
Confidence 999999999999999999999999999999999999999999999999999999999888877765543
No 75
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.95 E-value=1.1e-27 Score=210.13 Aligned_cols=191 Identities=20% Similarity=0.252 Sum_probs=140.9
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc------CCCeEEEEcc
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSP 86 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~------~~~~~lil~P 86 (430)
....|+.+++++.+.+.+.+ +||..|+++|.++++.+++++++++++|||+|||++|++++++ .+.++||++|
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAP 90 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred ccCChhhcCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEEC
Confidence 35678899999999999998 8999999999999999999999999999999999999988873 3568999999
Q ss_pred hHHHHHHHHHHHHHcC----cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh--hhcCCcc
Q 014134 87 LIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLN 160 (430)
Q Consensus 87 t~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~--~~~~~~~ 160 (430)
+++|+.|+.+.+..++ .......++....... ... .. +.++|+||+.+...... .....++
T Consensus 91 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~--~~--------~~iiv~Tp~~l~~~~~~~~~~~~~~~ 157 (224)
T 1qde_A 91 TRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDA---EGL--RD--------AQIVVGTPGRVFDNIQRRRFRTDKIK 157 (224)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C--TT--------CSEEEECHHHHHHHHHTTSSCCTTCC
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHH---hcC--CC--------CCEEEECHHHHHHHHHhCCcchhhCc
Confidence 9999999999998863 2333333222111110 011 11 23389999988776543 2356689
Q ss_pred EEEEecCccccccCCCcHHHHHHHHHHHhhC-CCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEe
Q 014134 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (430)
Q Consensus 161 ~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 224 (430)
++|+||||++.+++ +... +..+.... ++.|++++|||+++.+......++ .++..+.
T Consensus 158 ~iViDEah~~~~~~--~~~~---l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~--~~p~~i~ 215 (224)
T 1qde_A 158 MFILDEADEMLSSG--FKEQ---IYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFM--RNPVRIL 215 (224)
T ss_dssp EEEEETHHHHHHTT--CHHH---HHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHC--SSCEEEC
T ss_pred EEEEcChhHHhhhh--hHHH---HHHHHHhCCccCeEEEEEeecCHHHHHHHHHHC--CCCEEEE
Confidence 99999999998876 5543 34444444 477899999999998877666554 3444443
No 76
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.95 E-value=4.4e-27 Score=203.57 Aligned_cols=188 Identities=19% Similarity=0.212 Sum_probs=140.8
Q ss_pred cCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc---------CCCeEEEEcc
Q 014134 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---------KPGIVLVVSP 86 (430)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~---------~~~~~lil~P 86 (430)
.|+++++++.+.+.|.+ +|+.+|+++|.++++.+++++++++++|||+|||++|+++++. .+.+++|++|
T Consensus 2 ~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P 80 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHG-RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTP 80 (207)
T ss_dssp CGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECS
T ss_pred ChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEEC
Confidence 47889999999999998 8999999999999999999999999999999999999988763 3568999999
Q ss_pred hHHHHHHHHHHHHHcCc--ceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh--hhcCCccEE
Q 014134 87 LIALMENQVIGLKEKGI--AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNLV 162 (430)
Q Consensus 87 t~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~--~~~~~~~~l 162 (430)
+++|+.|+.+.+..+.. ......++.......... .. . . +++|+||+.+..+... .....++++
T Consensus 81 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~--~------~i~v~T~~~l~~~~~~~~~~~~~~~~i 148 (207)
T 2gxq_A 81 TRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL---LR-G--A------DAVVATPGRALDYLRQGVLDLSRVEVA 148 (207)
T ss_dssp SHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHH---HH-C--C------SEEEECHHHHHHHHHHTSSCCTTCSEE
T ss_pred CHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHh---hC-C--C------CEEEECHHHHHHHHHcCCcchhhceEE
Confidence 99999999999998743 333333333222111111 11 1 1 2289999988777554 335668999
Q ss_pred EEecCccccccCCCcHHHHHHHHHHHhhCC-CCcEEEEEcCCCchhHHHHHHHhCCCCCeEE
Q 014134 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (430)
Q Consensus 163 ViDE~h~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 223 (430)
|+||||++.+.+ +...+ ..+....+ +.|++++|||+++........++ .+|..+
T Consensus 149 ViDEah~~~~~~--~~~~~---~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~p~~i 203 (207)
T 2gxq_A 149 VLDEADEMLSMG--FEEEV---EALLSATPPSRQTLLFSATLPSWAKRLAERYM--KNPVLI 203 (207)
T ss_dssp EEESHHHHHHTT--CHHHH---HHHHHTSCTTSEEEEECSSCCHHHHHHHHHHC--SSCEEE
T ss_pred EEEChhHhhccc--hHHHH---HHHHHhCCccCeEEEEEEecCHHHHHHHHHHc--CCCeEE
Confidence 999999998776 55443 44444444 77899999999998766555444 445444
No 77
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=3.7e-27 Score=199.17 Aligned_cols=157 Identities=21% Similarity=0.357 Sum_probs=126.7
Q ss_pred CCceEEEEEecCcchhHHHHHHHHHHhc-CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcC
Q 014134 229 RPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307 (430)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 307 (430)
.+++...+.... ...|...|.++++.. +++++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|
T Consensus 17 ~~~i~q~~~~v~-~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g 95 (185)
T 2jgn_A 17 SENITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 95 (185)
T ss_dssp CTTEEEEEEECC-GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT
T ss_pred CCCceEEEEEeC-cHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 445555555443 457888999999876 577999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCCCCchh
Q 014134 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386 (430)
Q Consensus 308 ~~~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (430)
+.+|||||+++++|+|+|++++||++++|+++.+|+||+||+||.|+.|.+++|+++.+...++.+.+.+......++.
T Consensus 96 ~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 174 (185)
T 2jgn_A 96 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPS 174 (185)
T ss_dssp SSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCH
T ss_pred CCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999998888887666555443
No 78
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.95 E-value=2.4e-27 Score=205.05 Aligned_cols=142 Identities=26% Similarity=0.382 Sum_probs=132.0
Q ss_pred CcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecccc
Q 014134 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (430)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 319 (430)
.....|+..+.+++...+++++||||+++..++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||++++
T Consensus 13 ~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 92 (212)
T 3eaq_A 13 APVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAA 92 (212)
T ss_dssp CCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTT
T ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhh
Confidence 34467899999999888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCCC
Q 014134 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381 (430)
Q Consensus 320 ~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~ 381 (430)
+|+|+|++++||++++|+++..|+||+||+||.|+.|.|++++++.+...++.+.+..+...
T Consensus 93 ~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~ 154 (212)
T 3eaq_A 93 RGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 154 (212)
T ss_dssp CSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCC
T ss_pred cCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcC
Confidence 99999999999999999999999999999999999999999999999999999988776553
No 79
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.6e-27 Score=211.96 Aligned_cols=193 Identities=21% Similarity=0.202 Sum_probs=137.7
Q ss_pred CChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc-------CCCeEEEEcchHHHHH
Q 014134 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-------KPGIVLVVSPLIALME 92 (430)
Q Consensus 20 ~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~-------~~~~~lil~Pt~~L~~ 92 (430)
+++++.+.+.+.+ +||.+|+++|.++++.++++++++++||||+|||++|+++++. .+.+++|++||++|+.
T Consensus 34 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~ 112 (245)
T 3dkp_A 34 YKINSRLLQNILD-AGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELAS 112 (245)
T ss_dssp HCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHH
T ss_pred cCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHH
Confidence 4789999999998 7999999999999999999999999999999999999999873 3568999999999999
Q ss_pred HHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhh----hcCCccEEEEecCc
Q 014134 93 NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH----SRGLLNLVAIDEAH 168 (430)
Q Consensus 93 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~----~~~~~~~lViDE~h 168 (430)
|+.+.+.+++................. ...........++ +|+||+++..+.... ....++++|+||||
T Consensus 113 q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~I------~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah 185 (245)
T 3dkp_A 113 QIHRELIKISEGTGFRIHMIHKAAVAA-KKFGPKSSKKFDI------LVTTPNRLIYLLKQDPPGIDLASVEWLVVDESD 185 (245)
T ss_dssp HHHHHHHHHTTTSCCCEECCCHHHHHH-TTTSTTSCCCCCE------EEECHHHHHHHHHSSSCSCCCTTCCEEEESSHH
T ss_pred HHHHHHHHHhcccCceEEEEecCccHH-HHhhhhhcCCCCE------EEECHHHHHHHHHhCCCCcccccCcEEEEeChH
Confidence 999999986432221111111111110 0000111122233 899999988876543 45678999999999
Q ss_pred cccccC-CCcHHHHHHHHHHHhhC--CCCcEEEEEcCCCchhHHHHHHHhCCCCCeEEec
Q 014134 169 CISSWG-HDFRPSYRKLSSLRNYL--PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS 225 (430)
Q Consensus 169 ~~~~~~-~~~~~~~~~l~~~~~~~--~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 225 (430)
++.+++ ..+...+ ..+.... ++.|+++||||+++.+.......+ .++..+..
T Consensus 186 ~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l--~~p~~i~~ 240 (245)
T 3dkp_A 186 KLFEDGKTGFRDQL---ASIFLACTSHKVRRAMFSATFAYDVEQWCKLNL--DNVISVSI 240 (245)
T ss_dssp HHHHHC--CHHHHH---HHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHS--SSCEEEEE
T ss_pred HhcccccccHHHHH---HHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhC--CCCEEEEe
Confidence 998854 2254443 3333332 467899999999998877555544 45555543
No 80
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.95 E-value=2.9e-28 Score=217.71 Aligned_cols=195 Identities=20% Similarity=0.248 Sum_probs=143.2
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC---------------
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------------- 77 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~--------------- 77 (430)
....|+.+++++.+.+.|.. +||.+|+++|.++++.++++++++++||||+|||++|+++++..
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILL-ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTT-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred ccCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 44568889999999999997 89999999999999999999999999999999999999988632
Q ss_pred CCeEEEEcchHHHHHHHHHHHHHcC----cceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHh
Q 014134 78 PGIVLVVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153 (430)
Q Consensus 78 ~~~~lil~Pt~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~ 153 (430)
+.++||++||++|+.|+.+.+..++ .......++........ .. ... .+ ++|+||+++..+...
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~--~~------Ivv~Tp~~l~~~l~~ 167 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR---EV-QMG--CH------LLVATPGRLVDFIEK 167 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH---HH-SSC--CS------EEEECHHHHHHHHHT
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---Hh-CCC--CC------EEEECHHHHHHHHHc
Confidence 3589999999999999999998853 23333333332222111 11 111 22 289999988887654
Q ss_pred h--hcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCC--CCcEEEEEcCCCchhHHHHHHHhCCCCCeEEe
Q 014134 154 H--SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (430)
Q Consensus 154 ~--~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 224 (430)
. ....++++|+||||++.+++ +...+..+.......+ +.|+++||||+++.+.......+. ++..+.
T Consensus 168 ~~~~~~~~~~lViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~--~~~~i~ 238 (253)
T 1wrb_A 168 NKISLEFCKYIVLDEADRMLDMG--FEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLY--NYIFMT 238 (253)
T ss_dssp TSBCCTTCCEEEEETHHHHHHTT--CHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCS--SCEEEE
T ss_pred CCCChhhCCEEEEeCHHHHHhCc--hHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcC--CCEEEE
Confidence 3 35668899999999999877 5554444432111222 578999999999987776555553 455443
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=3.6e-27 Score=197.04 Aligned_cols=140 Identities=17% Similarity=0.329 Sum_probs=129.9
Q ss_pred chhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecccccc
Q 014134 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (430)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~G 321 (430)
...|...+.++++..+++++||||+++..++.+++.|...++++..+||++++.+|..+++.|++|+.+|||||+++++|
T Consensus 15 ~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 94 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 94 (172)
T ss_dssp GGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTT
T ss_pred hHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcC
Confidence 46789999999998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCcc-chHHHHHHHHhccCCC
Q 014134 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSKNQSKN 381 (430)
Q Consensus 322 idi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~-~~~~~~~~~~~~~~~~ 381 (430)
+|+|++++||++++|+|+..|+||+||+||.|+.|.+++|+.+. +...++.+.+......
T Consensus 95 ldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (172)
T 1t5i_A 95 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNI 155 (172)
T ss_dssp CCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCE
T ss_pred cchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcch
Confidence 99999999999999999999999999999999999999999876 5677777777665543
No 82
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=6.1e-27 Score=198.64 Aligned_cols=154 Identities=18% Similarity=0.322 Sum_probs=131.0
Q ss_pred CceEEEEEecCcchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCc
Q 014134 230 PNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309 (430)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 309 (430)
.++...+.... ...|...|.+++... ++++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.
T Consensus 28 ~~i~q~~~~~~-~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~ 105 (191)
T 2p6n_A 28 LDVIQEVEYVK-EEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 105 (191)
T ss_dssp CCSEEEEEECC-GGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSC
T ss_pred cCceEEEEEcC-hHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 44555554443 457888999988875 4589999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCcc-chHHHHHHHHhccCCCCCch
Q 014134 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSKNQSKNSQSF 385 (430)
Q Consensus 310 ~vLv~T~~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~ 385 (430)
+|||||+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.+++|+++. +...++.+.+.+.......+
T Consensus 106 ~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~~l~~~~~~~p 182 (191)
T 2p6n_A 106 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEAKQKVP 182 (191)
T ss_dssp SEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHHHHHHTTCCCC
T ss_pred EEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHHHHHHccCcCC
Confidence 99999999999999999999999999999999999999999999999999999876 66777777666655444433
No 83
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.94 E-value=5.6e-26 Score=205.41 Aligned_cols=140 Identities=25% Similarity=0.389 Sum_probs=127.7
Q ss_pred cchhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccc
Q 014134 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (430)
Q Consensus 241 ~~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 320 (430)
....|++.+.++++...++++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++++
T Consensus 11 ~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~ 90 (300)
T 3i32_A 11 PVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAAR 90 (300)
T ss_dssp CSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhc
Confidence 34678999999998877889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccCC
Q 014134 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (430)
Q Consensus 321 Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~ 380 (430)
|+|+|++++||++++|++...|+||+||+||.|+.|.|++|+++.+...++.+.+..+..
T Consensus 91 Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~ 150 (300)
T 3i32_A 91 GLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 150 (300)
T ss_dssp STTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCC
T ss_pred CccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999999999999999988888877654
No 84
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=2.3e-23 Score=206.08 Aligned_cols=124 Identities=19% Similarity=0.134 Sum_probs=96.7
Q ss_pred HHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhh---cCCCeEEEEcchHHHHHHHHHHHHH----cCc
Q 014134 31 RWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE----KGI 103 (430)
Q Consensus 31 ~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt~~L~~q~~~~~~~----~~~ 103 (430)
++.+|+ +|+++|..+++.++.|+ +.+++||+|||++|.+|++ ..+..++|++||++||.|.++++.. +|+
T Consensus 73 ~R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGL 149 (997)
T 2ipc_A 73 KRYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGL 149 (997)
T ss_dssp HHHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 355799 89999999999999998 9999999999999999984 3467899999999999999988776 477
Q ss_pred ceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHH-HHHHHhh--------hcC---CccEEEEecCcccc
Q 014134 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM-SKLKKIH--------SRG---LLNLVAIDEAHCIS 171 (430)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~-~~~~~~~--------~~~---~~~~lViDE~h~~~ 171 (430)
.+....++.........+. ++ ++++||+++ .+++... ... .+.++|+||+|.++
T Consensus 150 sv~~i~Gg~~~~~r~~ay~--------~D------IvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 150 SVGVIQHASTPAERRKAYL--------AD------VTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp CEEECCTTCCHHHHHHHHT--------SS------EEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred eEEEEeCCCCHHHHHHHcC--------CC------EEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 7777766655433333221 22 299999987 4544322 245 78999999999986
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.88 E-value=1.2e-27 Score=199.91 Aligned_cols=137 Identities=23% Similarity=0.319 Sum_probs=127.8
Q ss_pred hhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccccccc
Q 014134 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (430)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 322 (430)
..+...+.++++..+++++||||++++.++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+
T Consensus 15 ~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 94 (170)
T 2yjt_D 15 EHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGI 94 (170)
Confidence 56778888888877778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEEeeCccchHHHHHHHHhccC
Q 014134 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (430)
Q Consensus 323 di~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~ 379 (430)
|+|++++||++++|+++..|+||+||+||.|+.|.+++++.+.+...+..+.+....
T Consensus 95 d~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 151 (170)
T 2yjt_D 95 DIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEE 151 (170)
Confidence 999999999999999999999999999999999999999999988888777765543
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.90 E-value=2e-23 Score=205.50 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=61.1
Q ss_pred cCCccchHHHHHHHHH----HHcCCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCcceeEeC
Q 014134 34 FGHAQFRDKQLDAIQA----VLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (430)
Q Consensus 34 ~g~~~~~~~Q~~~~~~----l~~~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 109 (430)
.|| +|+++|.+++.. +.+++++++.||||+|||++|++|++....+++|++||++|++|+.+++..++.......
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l~ 82 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFLI 82 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHGGGTCCEEEC-
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHhcCCcEEEec
Confidence 477 799999998654 457899999999999999999999998899999999999999999999988765554433
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.85 E-value=1.8e-19 Score=178.08 Aligned_cols=311 Identities=14% Similarity=0.103 Sum_probs=186.6
Q ss_pred cchHHHHHHHHH----HHcCCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHHHHHHHc----CcceeEeC
Q 014134 38 QFRDKQLDAIQA----VLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK----GIAGEFLS 109 (430)
Q Consensus 38 ~~~~~Q~~~~~~----l~~~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~----~~~~~~~~ 109 (430)
+++|+|.+++.. +..++++++.||||+|||++|++|++..+.+++|++||++|+.|+.+++..+ +.......
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~ 82 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLV 82 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEc
Confidence 589999997765 4578999999999999999999999998899999999999999999999886 33333322
Q ss_pred CCchHH------------------------------HHHHHHhh---------------hhcCCCceeEEEECCccccCh
Q 014134 110 STQTMQ------------------------------VKTKIYED---------------LDSGKPSLRLLYVTPELTATP 144 (430)
Q Consensus 110 ~~~~~~------------------------------~~~~~~~~---------------~~~~~~~~~i~~~~~~~v~T~ 144 (430)
+....- ........ ........++ +|+||
T Consensus 83 gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI------VV~~~ 156 (551)
T 3crv_A 83 GKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV------IALTY 156 (551)
T ss_dssp CHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE------EEEET
T ss_pred cccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE------EEeCc
Confidence 211000 00000000 0001112333 77777
Q ss_pred hHHHHHHHhhh---cCCccEEEEecCccccccCCC---------------------------------------------
Q 014134 145 GFMSKLKKIHS---RGLLNLVAIDEAHCISSWGHD--------------------------------------------- 176 (430)
Q Consensus 145 ~~~~~~~~~~~---~~~~~~lViDE~h~~~~~~~~--------------------------------------------- 176 (430)
..+.+...... .....++||||||++.+ ..+
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~ 235 (551)
T 3crv_A 157 PYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYI 235 (551)
T ss_dssp HHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCE
T ss_pred hHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 75554322211 12456899999999866 100
Q ss_pred --------cHHHHH-------------------------HHHHHHh----------------------------hCCC--
Q 014134 177 --------FRPSYR-------------------------KLSSLRN----------------------------YLPD-- 193 (430)
Q Consensus 177 --------~~~~~~-------------------------~l~~~~~----------------------------~~~~-- 193 (430)
+...+. .+..... .+.+
T Consensus 236 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~ 315 (551)
T 3crv_A 236 KVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNE 315 (551)
T ss_dssp ECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTT
T ss_pred ccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccC
Confidence 000000 0000000 1123
Q ss_pred CcEEEEEcCCCchhHHHHHHHhCCCCCeE-------EeccCCCCceEEEEEec-Cc-----chhHHHHH----HHHHHhc
Q 014134 194 VPILALTATAAPKVQKDVMESLCLQNPLV-------LKSSFNRPNLFYEVRYK-DL-----LDDAYADL----CSVLKAN 256 (430)
Q Consensus 194 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-~~-----~~~~~~~l----~~~l~~~ 256 (430)
..+|++|||+.+ ...+...++...+.. +...+ ..+....+... .. .......+ .+++..
T Consensus 316 ~svIltSaTL~~--~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~- 391 (551)
T 3crv_A 316 LSIILMSGTLPP--REYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ- 391 (551)
T ss_dssp CEEEEEESSCCC--HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH-
T ss_pred ceEEEEeeCCCc--HHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh-
Confidence 569999999997 455666676653322 11222 23332222211 10 01223333 334433
Q ss_pred CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEe--cccccccccc-----CceE
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT--VAFGMGIDRK-----DVRL 329 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T--~~~~~Gidi~-----~~~~ 329 (430)
.++.++||++|....+.+++. .+..+..-..+++ +...++.|+.+.-.||+++ ...++|||+| .++.
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~ 465 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISD 465 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEE
T ss_pred CCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeE
Confidence 456899999999999888872 3444433333444 4556788864445799998 5899999999 4788
Q ss_pred EEEecCCC---------------------CH---------HHHHHHhccCCCCCCCceEEEeeCcc
Q 014134 330 VCHFNIPK---------------------SM---------EAFYQESGRAGRDQLPSKSLLYYGMD 365 (430)
Q Consensus 330 vi~~~~p~---------------------s~---------~~~~q~~GR~~R~g~~g~~i~~~~~~ 365 (430)
||...+|. .. ..+.|.+||+-|..++--++++++..
T Consensus 466 viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 466 VVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp EEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 99888763 11 12368899999986655555555554
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.84 E-value=6.9e-21 Score=165.62 Aligned_cols=155 Identities=21% Similarity=0.235 Sum_probs=100.1
Q ss_pred cCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC---------CCeEEEEcchHHHHHH-HHHHHHHc--
Q 014134 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------PGIVLVVSPLIALMEN-QVIGLKEK-- 101 (430)
Q Consensus 34 ~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~---------~~~~lil~Pt~~L~~q-~~~~~~~~-- 101 (430)
.+..+|+++|.++++.+++++++++.+|||+|||++++.+++.. ..+++|++|+++|+.| +.+.+..+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 35558999999999999999999999999999999998887632 6789999999999999 77777765
Q ss_pred -CcceeEeCCCchHHHHH-HHHhhhhcCCCceeEEEECCccccChhHHHHHHHh--------hhcCCccEEEEecCcccc
Q 014134 102 -GIAGEFLSSTQTMQVKT-KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--------HSRGLLNLVAIDEAHCIS 171 (430)
Q Consensus 102 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~--------~~~~~~~~lViDE~h~~~ 171 (430)
+.......+........ .... . . .++|+||+.+...... .....+++||+||||++.
T Consensus 109 ~~~~v~~~~g~~~~~~~~~~~~~-----~--~------~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~ 175 (216)
T 3b6e_A 109 KWYRVIGLSGDTQLKISFPEVVK-----S--C------DIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTN 175 (216)
T ss_dssp TTSCEEECCC---CCCCHHHHHH-----H--C------SEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC----
T ss_pred cCceEEEEeCCcccchhHHhhcc-----C--C------CEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhc
Confidence 23333333222111000 1100 1 2 2289999988776554 335668999999999997
Q ss_pred ccCCCcHHHHHHHHHHH-h----------hCCCCcEEEEEcC
Q 014134 172 SWGHDFRPSYRKLSSLR-N----------YLPDVPILALTAT 202 (430)
Q Consensus 172 ~~~~~~~~~~~~l~~~~-~----------~~~~~~~i~~SAT 202 (430)
+.+. +...+..+.... . ..++.++++||||
T Consensus 176 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 176 KEAV-YNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp ---C-HHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred cCCc-HHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 6442 333332221111 0 0157889999998
No 89
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.83 E-value=3.9e-20 Score=162.52 Aligned_cols=139 Identities=22% Similarity=0.124 Sum_probs=108.0
Q ss_pred cchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCcc-eeEeCCCchHHH
Q 014134 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA-GEFLSSTQTMQV 116 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~ 116 (430)
+|+++|.++++.+++++++++++|||+|||.+++.++...+.+++|++|+++|+.|+.+.+..++.. .....+....
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~~-- 170 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-- 170 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCBC--
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCCC--
Confidence 6899999999999999999999999999999998888877889999999999999999999987766 5555443321
Q ss_pred HHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcE
Q 014134 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196 (430)
Q Consensus 117 ~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 196 (430)
. . .++|+|++.+....... ...+++||+||+|++.+.. ...+...++..++
T Consensus 171 -----------~--~------~i~v~T~~~l~~~~~~~-~~~~~llIiDEaH~l~~~~---------~~~i~~~~~~~~~ 221 (237)
T 2fz4_A 171 -----------L--K------PLTVSTYDSAYVNAEKL-GNRFMLLIFDEVHHLPAES---------YVQIAQMSIAPFR 221 (237)
T ss_dssp -----------C--C------SEEEEEHHHHHHTHHHH-TTTCSEEEEECSSCCCTTT---------HHHHHHTCCCSEE
T ss_pred -----------c--C------CEEEEeHHHHHhhHHHh-cccCCEEEEECCccCCChH---------HHHHHHhccCCEE
Confidence 1 1 23888888765554432 2458999999999997643 2335556677889
Q ss_pred EEEEcCCCchh
Q 014134 197 LALTATAAPKV 207 (430)
Q Consensus 197 i~~SAT~~~~~ 207 (430)
+++|||+.+..
T Consensus 222 l~LSATp~r~D 232 (237)
T 2fz4_A 222 LGLTATFERED 232 (237)
T ss_dssp EEEEESCC---
T ss_pred EEEecCCCCCC
Confidence 99999998764
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.81 E-value=6.3e-20 Score=166.20 Aligned_cols=145 Identities=18% Similarity=0.141 Sum_probs=103.4
Q ss_pred cchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhc----CCCeEEEEcchHHHHHHHHHHHHHcCcce----eEeC
Q 014134 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAG----EFLS 109 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~----~~~~~lil~Pt~~L~~q~~~~~~~~~~~~----~~~~ 109 (430)
+|+++|.++++.++++++.++++|||+|||.+++.++.. ...++||++|+++|+.|+.+++.+++... ....
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~ 192 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEe
Confidence 799999999999998888999999999999998776652 24589999999999999999999875421 1111
Q ss_pred CCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHh
Q 014134 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (430)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~ 189 (430)
++..... ......++ +|+||+.+..... .....+++||+||||++.+ ..+..+..
T Consensus 193 ~~~~~~~---------~~~~~~~I------~v~T~~~l~~~~~-~~~~~~~~vIiDEaH~~~~---------~~~~~il~ 247 (282)
T 1rif_A 193 GGASKDD---------KYKNDAPV------VVGTWQTVVKQPK-EWFSQFGMMMNDECHLATG---------KSISSIIS 247 (282)
T ss_dssp TTCSSTT---------CCCTTCSE------EEECHHHHTTSCG-GGGGGEEEEEEETGGGCCH---------HHHHHHTT
T ss_pred CCCcchh---------hhccCCcE------EEEchHHHHhhHH-HHHhhCCEEEEECCccCCc---------ccHHHHHH
Confidence 1111000 00112233 8888875543321 2345689999999999864 34455556
Q ss_pred hC-CCCcEEEEEcCCCchh
Q 014134 190 YL-PDVPILALTATAAPKV 207 (430)
Q Consensus 190 ~~-~~~~~i~~SAT~~~~~ 207 (430)
.+ +..+++++|||+++..
T Consensus 248 ~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 248 GLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp TCTTCCEEEEECSSCCTTS
T ss_pred HhhcCCeEEEEeCCCCCcc
Confidence 55 4788999999998754
No 91
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.80 E-value=5.8e-20 Score=164.12 Aligned_cols=124 Identities=11% Similarity=0.123 Sum_probs=97.3
Q ss_pred chhHHHHHHHHHHhc--CCceEEEEeCccccHHHHHHHHHcC-CCcceeecCCCCHHHHHHHHHHhhcC-Cce-EEEEec
Q 014134 242 LDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISS-RKQ-VVVATV 316 (430)
Q Consensus 242 ~~~~~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~-~~~~~~~hg~~~~~~r~~~~~~f~~g-~~~-vLv~T~ 316 (430)
...|+..+.+++... .+.++||||++...++.+.+.|.+. |+.+..+||+++..+|..+++.|+++ ..+ +|++|+
T Consensus 94 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 173 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 173 (271)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh
Confidence 357888888887764 6789999999999999999999885 99999999999999999999999998 677 789999
Q ss_pred cccccccccCceEEEEecCCCCHHHHHHHhccCCCCCCCceEEE--eeCcc
Q 014134 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL--YYGMD 365 (430)
Q Consensus 317 ~~~~Gidi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~g~~i~--~~~~~ 365 (430)
++++|+|++.+++||++|+||++..|.||+||++|.|+.+.+.+ ++..+
T Consensus 174 ~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 174 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999999999999999999999999999999998876544 44444
No 92
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.80 E-value=4.9e-19 Score=155.70 Aligned_cols=153 Identities=15% Similarity=0.071 Sum_probs=107.7
Q ss_pred ccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcC--------CCeEEEEcchHHHHHHHHHHHHHc-CcceeE
Q 014134 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK-GIAGEF 107 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~--------~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~~ 107 (430)
..++++|.++++.+.+|++++++||||||||.++.++++.. ..++++++|+++++.|+.+.+... +.....
T Consensus 60 ~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~ 139 (235)
T 3llm_A 60 LPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGK 139 (235)
T ss_dssp SGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTS
T ss_pred CChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCc
Confidence 35799999999999999999999999999998877666531 348999999999999999888763 211100
Q ss_pred eCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccc-cccCCCcHHHHHHHHH
Q 014134 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI-SSWGHDFRPSYRKLSS 186 (430)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~-~~~~~~~~~~~~~l~~ 186 (430)
..+.. . ........... .++|+||+++.++... .+.++++||+||+|.. .+.+ .....+..
T Consensus 140 ~~g~~---~----~~~~~~~~~~~------~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~----~~~~~l~~ 201 (235)
T 3llm_A 140 SCGYS---V----RFESILPRPHA------SIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTD----FLLVVLRD 201 (235)
T ss_dssp SEEEE---E----TTEEECCCSSS------EEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHH----HHHHHHHH
T ss_pred eEEEe---e----chhhccCCCCC------eEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchH----HHHHHHHH
Confidence 00000 0 00000000112 2389999988887654 4778999999999984 3322 22245666
Q ss_pred HHhhCCCCcEEEEEcCCCchh
Q 014134 187 LRNYLPDVPILALTATAAPKV 207 (430)
Q Consensus 187 ~~~~~~~~~~i~~SAT~~~~~ 207 (430)
+....++.|+++||||++...
T Consensus 202 i~~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 202 VVQAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHHCTTSEEEEEECSSCCHH
T ss_pred HHhhCCCCeEEEEecCCCHHH
Confidence 777778899999999999875
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.78 E-value=3e-17 Score=163.41 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=96.6
Q ss_pred cEEEEEcCCCchhHHHHHHHhCCCCCeEEe--ccCCCCceEEEEEec------CcchhHH----HHHHHHHHhcCCceEE
Q 014134 195 PILALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYK------DLLDDAY----ADLCSVLKANGDTCAI 262 (430)
Q Consensus 195 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~----~~l~~~l~~~~~~~~i 262 (430)
.+|++|||+.+ ...+...++.. ...+. ..+...+....+... ....... +.+.+++... ++.++
T Consensus 377 ~~il~SaTL~p--~~~~~~~lGl~-~~~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~-~g~~l 452 (620)
T 4a15_A 377 KTIHMSGTLDP--FDFYSDITGFE-IPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKV-KKNTI 452 (620)
T ss_dssp EEEEEESSCCS--HHHHHHHHCCC-CCEEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHH-CSCEE
T ss_pred eEEEEccCCCc--HHHHHHHhCCC-ceeeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhC-CCCEE
Confidence 35899999997 45566667665 33332 223333332222111 0011112 2344444443 45699
Q ss_pred EEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEec--cccccccccC--ceEEEEecCCC-
Q 014134 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV--AFGMGIDRKD--VRLVCHFNIPK- 337 (430)
Q Consensus 263 Vf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~--~~~~Gidi~~--~~~vi~~~~p~- 337 (430)
||++|....+.+++.++. .... ...+++..+|..+++.|+ ++-.||+++. .+++|||+|+ .+.||...+|.
T Consensus 453 vlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp 528 (620)
T 4a15_A 453 VYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFP 528 (620)
T ss_dssp EEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCC
T ss_pred EEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCC
Confidence 999999999999988862 2222 444556678999999999 8888999985 8999999987 67899888773
Q ss_pred ------------------CH----------HHHHHHhccCCCCCCCceEEEeeCc
Q 014134 338 ------------------SM----------EAFYQESGRAGRDQLPSKSLLYYGM 364 (430)
Q Consensus 338 ------------------s~----------~~~~q~~GR~~R~g~~g~~i~~~~~ 364 (430)
+. ....|.+||+-|...+--++++++.
T Consensus 529 ~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 529 RPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp CCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred CCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 11 1237999999998655444555544
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.80 E-value=3.1e-08 Score=98.57 Aligned_cols=77 Identities=18% Similarity=0.087 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHH--HHhHHhhhc-----CCCeEEEEcchHHHHHHHHH
Q 014134 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKS--MCYQIPALA-----KPGIVLVVSPLIALMENQVI 96 (430)
Q Consensus 24 ~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT--~~~~~~~l~-----~~~~~lil~Pt~~L~~q~~~ 96 (430)
..+...|...|+-..-++.|..|++.++.++.+++.|++||||| ++++++.+. .+.++++++||..++.++.+
T Consensus 135 ~~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e 214 (608)
T 1w36_D 135 ALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTE 214 (608)
T ss_dssp HHHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHH
Confidence 34555566543322237899999999999999999999999999 556666653 35689999999999999887
Q ss_pred HHHH
Q 014134 97 GLKE 100 (430)
Q Consensus 97 ~~~~ 100 (430)
.+..
T Consensus 215 ~~~~ 218 (608)
T 1w36_D 215 SLGK 218 (608)
T ss_dssp HHTH
T ss_pred HHHH
Confidence 7654
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.23 E-value=3.6e-06 Score=84.59 Aligned_cols=68 Identities=22% Similarity=0.143 Sum_probs=56.1
Q ss_pred ccchHHHHHHHHHHHcCC-CEEEEcCCCChHHHHhHH---hhhcCCCeEEEEcchHHHHHHHHHHHHHcCcc
Q 014134 37 AQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~~~~-~~lv~a~tGsGKT~~~~~---~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 104 (430)
..+++-|.+|+..++..+ -.+|+||+|||||.+..- .++.++.++|+++||..-++++.+.+...+..
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ 259 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQR 259 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCc
Confidence 358999999999988766 478999999999976542 33467889999999999999999998876544
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.19 E-value=4.2e-06 Score=82.38 Aligned_cols=61 Identities=13% Similarity=-0.032 Sum_probs=49.4
Q ss_pred cchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhH--Hhh-hcCCCeEEEEcchHHHHHHHHHHH
Q 014134 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPA-LAKPGIVLVVSPLIALMENQVIGL 98 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~--~~~-l~~~~~~lil~Pt~~L~~q~~~~~ 98 (430)
.+++.|.+++..++.++.+++.||+|||||.+.. +.. ...+.++++++||...+..+.+..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhh
Confidence 4899999999999999999999999999996543 222 245788999999998888766543
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.18 E-value=1.9e-05 Score=78.96 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=56.4
Q ss_pred CccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHh--h-hc-CCCeEEEEcchHHHHHHHHHHHHHcCcc
Q 014134 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP--A-LA-KPGIVLVVSPLIALMENQVIGLKEKGIA 104 (430)
Q Consensus 36 ~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~--~-l~-~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 104 (430)
+..+++.|.+|+..++.+.-.+++||+|||||.+.... . +. .+.++++++||...++++.+.+...+..
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~ 250 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLK 250 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCC
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCe
Confidence 34689999999999988888999999999999764322 2 23 5679999999999999999998876543
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.10 E-value=7.9e-06 Score=78.62 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=49.3
Q ss_pred cCCccchHHHHHHHHHHHcC-----CCEEEEcCCCChHHHHhHH--hh-hcCCC-eEEEEcchHHHHHHHHHHH
Q 014134 34 FGHAQFRDKQLDAIQAVLSG-----RDCFCLMPTGGGKSMCYQI--PA-LAKPG-IVLVVSPLIALMENQVIGL 98 (430)
Q Consensus 34 ~g~~~~~~~Q~~~~~~l~~~-----~~~lv~a~tGsGKT~~~~~--~~-l~~~~-~~lil~Pt~~L~~q~~~~~ 98 (430)
+.|..|++-|.+++..++.. ..+++.|+.|||||.+... .. ...+. .+++++||...+..+.+.+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 57889999999999987542 3899999999999965432 22 23344 7999999998887666554
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.98 E-value=3.6e-05 Score=78.62 Aligned_cols=69 Identities=22% Similarity=0.308 Sum_probs=56.2
Q ss_pred CccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhH--Hhhh-c-CCCeEEEEcchHHHHHHHHHHHHHcCcc
Q 014134 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPAL-A-KPGIVLVVSPLIALMENQVIGLKEKGIA 104 (430)
Q Consensus 36 ~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~--~~~l-~-~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 104 (430)
...+++.|.+|+..++.+.-.++.||+|||||.+.. +..+ . .+.++++++||...++++.+.+...+..
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~ 426 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLK 426 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCC
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcc
Confidence 346899999999999888888999999999996643 2222 2 4679999999999999999998876654
No 100
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.95 E-value=0.00084 Score=67.54 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=50.2
Q ss_pred ccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHh---hhcC----CCeEEEEcchHHHHHHHHHHHHHc
Q 014134 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP---ALAK----PGIVLVVSPLIALMENQVIGLKEK 101 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~---~l~~----~~~~lil~Pt~~L~~q~~~~~~~~ 101 (430)
..+++-|.+++. ..++.++|.|++|||||.+.+.- ++.. ..+++++++|+..+.++.+++...
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 468999999997 34678999999999999776532 2332 258999999999999999988764
No 101
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.71 E-value=0.00032 Score=62.69 Aligned_cols=126 Identities=11% Similarity=0.060 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHh--cCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecccccc
Q 014134 244 DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (430)
Q Consensus 244 ~~~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~G 321 (430)
.|+..|..++.. ..+.+++||++..+..+-+.+++...+++...+.|.....+ .+. .+....+.+.|....-|
T Consensus 109 GKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k~----~~~~~~i~Lltsag~~g 183 (328)
T 3hgt_A 109 GKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AAA----NDFSCTVHLFSSEGINF 183 (328)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCT
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hhc----ccCCceEEEEECCCCCC
Confidence 455555555543 25779999999999999999999999999999999855432 221 24555665657766667
Q ss_pred cc-----ccCceEEEEecCCCCHHH-HHHHhccCCCCC--C--CceEEEeeCccchHHHHHHH
Q 014134 322 ID-----RKDVRLVCHFNIPKSMEA-FYQESGRAGRDQ--L--PSKSLLYYGMDDRRRMEFIL 374 (430)
Q Consensus 322 id-----i~~~~~vi~~~~p~s~~~-~~q~~GR~~R~g--~--~g~~i~~~~~~~~~~~~~~~ 374 (430)
+| ...++.||.||..|++.+ .+|.+-|+.|.| + .-.++-++..+..++...-.
T Consensus 184 in~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 184 TKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp TTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred cCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 76 678999999999999987 599888988873 2 34566666666655544433
No 102
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.58 E-value=0.00014 Score=68.14 Aligned_cols=43 Identities=14% Similarity=-0.068 Sum_probs=33.7
Q ss_pred EEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHHHHHHH
Q 014134 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKE 100 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~~~~~~ 100 (430)
.++.|+.|+|||....-. +. ....+|++||+++++++.+.+..
T Consensus 164 ~~I~G~aGsGKTt~I~~~-~~-~~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSR-VN-FEEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEECTTSCHHHHHHHH-CC-TTTCEEEESCHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHH-hc-cCCeEEEeCCHHHHHHHHHHhhh
Confidence 679999999999765432 22 25679999999999998888754
No 103
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00023 Score=72.77 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=56.5
Q ss_pred CccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhh---hc-CCCeEEEEcchHHHHHHHHHHHHHcCcc
Q 014134 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LA-KPGIVLVVSPLIALMENQVIGLKEKGIA 104 (430)
Q Consensus 36 ~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~---l~-~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 104 (430)
+..+++.|.+|+..++.+.-.++.||+|||||.+....+ +. .+.++++++||...++++.+.+...+..
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~ 430 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLK 430 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCcc
Confidence 346889999999999887778999999999997654222 22 4779999999999999999999887643
No 104
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.12 E-value=0.004 Score=51.21 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHH---------cCCCEEEEcCCCChHHHHh
Q 014134 40 RDKQLDAIQAVL---------SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 40 ~~~Q~~~~~~l~---------~~~~~lv~a~tGsGKT~~~ 70 (430)
.+.|.+++..+. .++.+++.||+|+|||..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 345555555543 3678999999999999654
No 105
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.00 E-value=0.0075 Score=55.80 Aligned_cols=63 Identities=22% Similarity=0.206 Sum_probs=49.2
Q ss_pred cchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhh-----hcCCCeEEEEcchHHHHHHHHHHHHH
Q 014134 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA-----LAKPGIVLVVSPLIALMENQVIGLKE 100 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~-----l~~~~~~lil~Pt~~L~~q~~~~~~~ 100 (430)
.|+|+|...+..+...+-+++..+-+.|||.+....+ ...+..+++++|++..|..+.+.+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 5899999999887655678999999999997654322 23456899999999998877766654
No 106
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.014 Score=52.48 Aligned_cols=19 Identities=5% Similarity=-0.067 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
+.++++.||+|+|||.+.-
T Consensus 45 ~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp CCEEEEECCCSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4689999999999997754
No 107
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.74 E-value=0.0046 Score=61.07 Aligned_cols=55 Identities=16% Similarity=0.128 Sum_probs=42.9
Q ss_pred cchHHHHHHHHHHHc--CCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHH
Q 014134 38 QFRDKQLDAIQAVLS--GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALME 92 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~--~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~ 92 (430)
.+|.-|.+++..+.. ....++.|+-|.|||.+.-+.+..-...++|.+|+.+-+.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~~ 231 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKASTD 231 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSCH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHHH
Confidence 678999999999887 3457899999999997766555444456799999976554
No 108
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.74 E-value=0.0017 Score=57.82 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=32.1
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHH--HcCCCEEEEcCCCChHHHHhH
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAV--LSGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l--~~~~~~lv~a~tGsGKT~~~~ 71 (430)
+...|+++.-.+...+.+.+... .+. ...+.+..+ ..++++++.||+|+|||..+-
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVE--LPL-KHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH--HHH-HCHHHHHHHCCCCCSEEEEESSSSSSHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH--HHh-hCHHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 34556666666666666665321 110 111222222 235689999999999997654
No 109
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.62 E-value=0.021 Score=53.07 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=15.3
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
+.+++.||+|+|||..+.
T Consensus 46 ~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 569999999999997653
No 110
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.60 E-value=0.0078 Score=54.68 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=30.8
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHH-----cCCCEEEEcCCCChHHHHhH
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL-----SGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~-----~~~~~lv~a~tGsGKT~~~~ 71 (430)
+...|.++.-.+...+.|.+...+ |. ..|.+. ..+++++.||+|+|||..+-
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~----~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVIL----PV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHH----HH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHHH----HH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 445667766666666667653210 00 011111 13579999999999997654
No 111
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.49 E-value=0.0091 Score=46.96 Aligned_cols=20 Identities=10% Similarity=-0.064 Sum_probs=17.1
Q ss_pred HcCCCEEEEcCCCChHHHHh
Q 014134 51 LSGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 51 ~~~~~~lv~a~tGsGKT~~~ 70 (430)
..+.++++.||+|+|||..+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 45679999999999999765
No 112
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.44 E-value=0.02 Score=56.68 Aligned_cols=63 Identities=22% Similarity=0.206 Sum_probs=49.6
Q ss_pred cchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhh-----hcCCCeEEEEcchHHHHHHHHHHHHH
Q 014134 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA-----LAKPGIVLVVSPLIALMENQVIGLKE 100 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~-----l~~~~~~lil~Pt~~L~~q~~~~~~~ 100 (430)
.|+|+|...+..+...+..++..+-|+|||.+....+ ...+..+++++|++..+..+.+.++.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 4799999999887556779999999999997654222 23355899999999999888876665
No 113
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.42 E-value=0.0063 Score=56.93 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=21.3
Q ss_pred CCCEEEEcCCCChHHHHhHHhhhcCCCeEEEE
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil 84 (430)
.+++++.||+|+|||..+-..+-..+..++.+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 36899999999999977644333333344433
No 114
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.35 E-value=0.0018 Score=55.13 Aligned_cols=36 Identities=25% Similarity=0.070 Sum_probs=26.3
Q ss_pred CCCEEEEcCCCChHHHHhHHhh---hcCCCeEEEEcchH
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLI 88 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~Pt~ 88 (430)
|.-.++.|++|+|||...+-.+ ..++.+++++.|..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 4457789999999998765333 24577888887764
No 115
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.34 E-value=0.024 Score=50.85 Aligned_cols=55 Identities=13% Similarity=0.126 Sum_probs=29.9
Q ss_pred cccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHH--HHcCCCEEEEcCCCChHHHHhH
Q 014134 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA--VLSGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~--l~~~~~~lv~a~tGsGKT~~~~ 71 (430)
...|.++.-.+...+.|.+... .+-.+. +.+.. +..++.+++.||+|+|||..+-
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~--~~~~~~-~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQ--YPVEHP-DKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH--HHHHCH-HHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH--HHhhCH-HHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 4456666555555566665211 111011 11111 1235679999999999997654
No 116
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.24 E-value=0.041 Score=49.87 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=15.7
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
+.+++.||+|+|||..+-
T Consensus 46 ~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp SEEEEESSSSSCHHHHHH
T ss_pred ceEEEECCCCccHHHHHH
Confidence 679999999999997654
No 117
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.24 E-value=0.029 Score=50.82 Aligned_cols=33 Identities=21% Similarity=0.137 Sum_probs=21.3
Q ss_pred CCCEEEEcCCCChHHHHhHHhh--h-cCCCeEEEEc
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPA--L-AKPGIVLVVS 85 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~--l-~~~~~~lil~ 85 (430)
++.+++.||+|+|||..+-..+ + ..+..++++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3689999999999996653221 1 2245555554
No 118
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.01 Score=54.96 Aligned_cols=57 Identities=11% Similarity=0.025 Sum_probs=35.2
Q ss_pred ccccCCCCChHHHHHHHHHHhcC--CccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHH
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFG--HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g--~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~ 72 (430)
+...|.+.+=.++..+.|.+..- +..|.-++...+ .-.+.+++.||+|||||+.+-.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllAkA 201 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLARA 201 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHHHH
Confidence 56677887767777777776321 222222222111 1247899999999999986543
No 119
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.15 E-value=0.0072 Score=53.41 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=15.5
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
.++++.||+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 479999999999997654
No 120
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.13 E-value=0.013 Score=48.44 Aligned_cols=132 Identities=17% Similarity=0.145 Sum_probs=65.8
Q ss_pred CCCEEEEcCCCChHHHHhHH---hhhcCCCeEEEEcchHH-HHHHHHHHHHHcCcceeEeCCCch--HHHHHHHHhhhhc
Q 014134 53 GRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIA-LMENQVIGLKEKGIAGEFLSSTQT--MQVKTKIYEDLDS 126 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~---~~l~~~~~~lil~Pt~~-L~~q~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 126 (430)
...+++..++|.|||.+++- -++.++.+|+++.-.+. .-..-.+.+..+++.......... .......
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~------ 101 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREAD------ 101 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHH------
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHH------
Confidence 35899999999999988763 33467889998843321 000001112222211111100000 0000000
Q ss_pred CCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCch
Q 014134 127 GKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (430)
Q Consensus 127 ~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~ 206 (430)
.-..-..+...........+++||+||+-.....+. .+. ..+..++...|..+-+.+|+--++.
T Consensus 102 -------------~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~--l~~-~ev~~~l~~Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 102 -------------TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDY--LPL-EEVISALNARPGHQTVIITGRGCHR 165 (196)
T ss_dssp -------------HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTS--SCH-HHHHHHHHTSCTTCEEEEECSSCCH
T ss_pred -------------HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCC--CCH-HHHHHHHHhCcCCCEEEEECCCCcH
Confidence 000011233334444456799999999977655552 222 3344455555666667777766554
No 121
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.0035 Score=58.93 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=36.8
Q ss_pred cccccCCCCChHHHHHHHHHHhc--CCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhH
Q 014134 12 SQTQKNKPLHEKEALVKLLRWHF--GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~--g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~ 71 (430)
.+...|.+.+-.++..+.|.+.. .+..|.-++...+ .-.+.+++.||+|||||+.+-
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHHH
Confidence 35677888888888888887631 1223333332211 124789999999999997653
No 122
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.10 E-value=0.0088 Score=52.35 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
.+.+++.||+|+|||..+-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997653
No 123
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.06 E-value=0.047 Score=48.70 Aligned_cols=19 Identities=21% Similarity=0.481 Sum_probs=16.4
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
++.+++.||+|+|||..+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 5689999999999997654
No 124
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.06 E-value=0.0086 Score=60.85 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=49.3
Q ss_pred ccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHh---hhcC----CCeEEEEcchHHHHHHHHHHHHHc
Q 014134 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP---ALAK----PGIVLVVSPLIALMENQVIGLKEK 101 (430)
Q Consensus 37 ~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~---~l~~----~~~~lil~Pt~~L~~q~~~~~~~~ 101 (430)
..+++-|.+|+.. .+.+++|.|+.|||||.+...- ++.. ..++|+++.|+..+.++.+++..+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4689999999875 4678999999999999765422 2322 357999999999999988887663
No 125
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.05 E-value=0.0068 Score=61.14 Aligned_cols=62 Identities=13% Similarity=0.150 Sum_probs=49.3
Q ss_pred cchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhh---hc----CCCeEEEEcchHHHHHHHHHHHHHc
Q 014134 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LA----KPGIVLVVSPLIALMENQVIGLKEK 101 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~---l~----~~~~~lil~Pt~~L~~q~~~~~~~~ 101 (430)
.+++-|.+++.. .+++++|.|+.|||||.+..--+ +. ...++++|+.|+..+.++.+++...
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 478999999875 46789999999999997765322 22 2357999999999999999988763
No 126
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.97 E-value=0.0089 Score=47.42 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.++.+++.+|+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5788999999999999643
No 127
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.97 E-value=0.18 Score=41.17 Aligned_cols=17 Identities=18% Similarity=0.170 Sum_probs=15.1
Q ss_pred CCEEEEcCCCChHHHHh
Q 014134 54 RDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~ 70 (430)
.++++.||+|+|||..+
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 67999999999999765
No 128
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.96 E-value=0.0067 Score=50.30 Aligned_cols=36 Identities=22% Similarity=0.073 Sum_probs=26.5
Q ss_pred CCCEEEEcCCCChHHHHhHHhhh---cCCCeEEEEcchH
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLI 88 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt~ 88 (430)
|+=.++.+|+|+|||...+-.+. .++.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 34467899999999977664432 4678899998884
No 129
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.95 E-value=0.012 Score=49.30 Aligned_cols=34 Identities=18% Similarity=-0.036 Sum_probs=25.1
Q ss_pred EEEEcCCCChHHHHhHHhh---hcCCCeEEEEcchHH
Q 014134 56 CFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA 89 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~Pt~~ 89 (430)
.++.++.|+|||..++-.+ ..++.+++++.|...
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 4589999999998766443 346788999998864
No 130
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.93 E-value=0.0091 Score=64.39 Aligned_cols=61 Identities=23% Similarity=0.279 Sum_probs=48.7
Q ss_pred cchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHH---hhhcC------CCeEEEEcchHHHHHHHHHHHHH
Q 014134 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI---PALAK------PGIVLVVSPLIALMENQVIGLKE 100 (430)
Q Consensus 38 ~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~---~~l~~------~~~~lil~Pt~~L~~q~~~~~~~ 100 (430)
++|+-|.+++.. .+++++|.|+.|||||.+.+- .++.. ..+++++++|+..+.++.+++..
T Consensus 10 ~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 589999999875 478999999999999987642 22333 24799999999999988877655
No 131
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.90 E-value=0.024 Score=52.16 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.6
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
+.+++.||+|+|||..+-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 579999999999997654
No 132
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.86 E-value=0.039 Score=50.29 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=24.3
Q ss_pred chHHHHHHHHHHH----cCC---CEEEEcCCCChHHHHhH
Q 014134 39 FRDKQLDAIQAVL----SGR---DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 39 ~~~~Q~~~~~~l~----~~~---~~lv~a~tGsGKT~~~~ 71 (430)
+.|+|.+++..+. +++ .+++.||+|+|||..+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 3577887776654 333 38999999999997654
No 133
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.011 Score=55.63 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=36.7
Q ss_pred cccccCCCCChHHHHHHHHHHhcC--CccchHHHHHHHHHH--HcCCCEEEEcCCCChHHHHhH
Q 014134 12 SQTQKNKPLHEKEALVKLLRWHFG--HAQFRDKQLDAIQAV--LSGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~g--~~~~~~~Q~~~~~~l--~~~~~~lv~a~tGsGKT~~~~ 71 (430)
.+...|.+.+=.++..+.|.+..- +..| +.+..+ .-.+.+++.||+|||||+.+-
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~p-----e~f~~~Gi~pprGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSP-----ERFATLGIDPPKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCH-----HHHHHHTCCCCSEEEECSCTTSSHHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCH-----HHHHHCCCCCCCceEeeCCCCCcHHHHHH
Confidence 356788888888888888887321 1122 222222 234789999999999997653
No 134
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.83 E-value=0.033 Score=52.91 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=15.7
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
+.+++.||+|+|||..+-
T Consensus 168 ~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 679999999999997664
No 135
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.82 E-value=0.14 Score=42.99 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.6
Q ss_pred CCEEEEcCCCChHHHHh
Q 014134 54 RDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~ 70 (430)
.++++.||+|+|||..+
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999654
No 136
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.80 E-value=0.045 Score=50.75 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
+.++++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4689999999999997653
No 137
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.80 E-value=0.011 Score=56.11 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=15.8
Q ss_pred CCEEEEcCCCChHHHHhHH
Q 014134 54 RDCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~ 72 (430)
.++++.||+|+|||..+-.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ 69 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEV 69 (447)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHH
Confidence 3699999999999976643
No 138
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.71 E-value=0.19 Score=44.89 Aligned_cols=17 Identities=18% Similarity=0.043 Sum_probs=15.0
Q ss_pred CCEEEEcCCCChHHHHh
Q 014134 54 RDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~ 70 (430)
.++++.||+|+|||..+
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999765
No 139
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.70 E-value=0.023 Score=50.71 Aligned_cols=18 Identities=22% Similarity=-0.025 Sum_probs=14.9
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
..+++.||+|+|||..+-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999997653
No 140
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.68 E-value=0.051 Score=51.55 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=15.0
Q ss_pred CCEEEEcCCCChHHHHh
Q 014134 54 RDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~ 70 (430)
+.+++.||+|+|||..+
T Consensus 131 ~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp CCEEEECSSSSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999655
No 141
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.63 E-value=0.14 Score=42.62 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=15.1
Q ss_pred CCEEEEcCCCChHHHHh
Q 014134 54 RDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~ 70 (430)
.++++.||+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 68999999999999654
No 142
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.63 E-value=0.031 Score=47.94 Aligned_cols=18 Identities=11% Similarity=0.194 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCChHHHHh
Q 014134 53 GRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~ 70 (430)
+..+++.||+|+|||..+
T Consensus 52 ~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 578999999999999654
No 143
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.60 E-value=0.047 Score=44.57 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCChHHHHh
Q 014134 53 GRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~ 70 (430)
..++++.||+|+|||..+
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999665
No 144
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.012 Score=55.30 Aligned_cols=57 Identities=12% Similarity=0.033 Sum_probs=34.0
Q ss_pred ccccCCCCChHHHHHHHHHHhcC--CccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHH
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFG--HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g--~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~ 72 (430)
+...|.+.+=.++..+.|.+..- +..|.-++... +.-.+.+++.||+|||||+.+-.
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllAkA 234 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLAKA 234 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHHHH
Confidence 56667777766667777765321 11222222111 11247899999999999987543
No 145
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.57 E-value=0.026 Score=54.81 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=25.9
Q ss_pred ccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCC
Q 014134 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (430)
Q Consensus 159 ~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~ 204 (430)
..+|++||+|.+..... ..+..+..+... .+.++|+.+++..
T Consensus 149 ~~vliIDEid~l~~~~~---~~l~~L~~~l~~-~~~~iIli~~~~~ 190 (516)
T 1sxj_A 149 HFVIIMDEVDGMSGGDR---GGVGQLAQFCRK-TSTPLILICNERN 190 (516)
T ss_dssp SEEEEECSGGGCCTTST---THHHHHHHHHHH-CSSCEEEEESCTT
T ss_pred CeEEEEECCCccchhhH---HHHHHHHHHHHh-cCCCEEEEEcCCC
Confidence 45899999999865321 112334444433 3566888888754
No 146
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.56 E-value=0.083 Score=48.99 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.8
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
.+++.||+|+|||...-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 69999999999997653
No 147
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.52 E-value=0.0048 Score=51.60 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=14.5
Q ss_pred CEEEEcCCCChHHHHhHH
Q 014134 55 DCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~ 72 (430)
-.++.|++|||||..+..
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 367999999999986543
No 148
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.016 Score=53.99 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=35.6
Q ss_pred cccccCCCCChHHHHHHHHHHhc--CCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhH
Q 014134 12 SQTQKNKPLHEKEALVKLLRWHF--GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~--g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~ 71 (430)
.+...|.+.+=.++..+.|.+.. .+..|.-++...+ .-.+.+++.||+|||||+.+-
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHHH
Confidence 45677888876677777777632 1222322322211 124789999999999998653
No 149
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.48 E-value=0.022 Score=51.65 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=11.9
Q ss_pred CccEEEEecCcccc
Q 014134 158 LLNLVAIDEAHCIS 171 (430)
Q Consensus 158 ~~~~lViDE~h~~~ 171 (430)
...++++||+|.+.
T Consensus 105 ~~~vliiDEi~~l~ 118 (324)
T 3u61_B 105 RQKVIVIDEFDRSG 118 (324)
T ss_dssp CEEEEEEESCCCGG
T ss_pred CCeEEEEECCcccC
Confidence 35689999999985
No 150
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.47 E-value=0.046 Score=50.30 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=20.9
Q ss_pred CCCEEEEcCCCChHHHHhHHhhhcCCCeEEEE
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil 84 (430)
.+.+++.||+|+|||..+-..+-..+...+.+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~i 148 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGATFFSI 148 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence 36799999999999977643333333333333
No 151
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.017 Score=54.23 Aligned_cols=56 Identities=16% Similarity=0.061 Sum_probs=33.3
Q ss_pred ccccCCCCChHHHHHHHHHHhcC--CccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhH
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFG--HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g--~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~ 71 (430)
+...|.+.+=.+...+.|.+..- +..|..++...+ .-.+.+++.||+|||||..+-
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHHH
Confidence 45677777666667776665321 112222222111 124679999999999997653
No 152
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.32 E-value=0.031 Score=53.66 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=16.6
Q ss_pred CCCEEEEcCCCChHHHHhHH
Q 014134 53 GRDCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~ 72 (430)
...+++.||+|+|||..+-.
T Consensus 238 ~~~vLL~GppGtGKT~lAra 257 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARA 257 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHH
Confidence 36799999999999987643
No 153
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.27 E-value=0.03 Score=56.90 Aligned_cols=67 Identities=10% Similarity=0.031 Sum_probs=38.4
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHhHHhhhcCCCe
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~~~~l~~~~~ 80 (430)
+...|..++-.++..+.|.+..-+...+|.+...+ .+...+.+++.+|+|+|||+.+-..+-+.+..
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~ 538 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHHHHHHHHhCCc
Confidence 45567788778888888887433321111111000 01123679999999999997664433333333
No 154
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.25 E-value=0.034 Score=56.57 Aligned_cols=79 Identities=11% Similarity=-0.005 Sum_probs=66.2
Q ss_pred CCceEEEEeCccccHHHHHHHHHc----CCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc-ccccccccCceEEE
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~-~~~Gidi~~~~~vi 331 (430)
.+.+++|.++++.-+.+.++.+++ .++.+..+||+++..+|...++.+.+|+.+|+|+|.. +...+++.++++||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 356899999999988888877764 3788999999999999999999999999999999964 44567888888888
Q ss_pred EecC
Q 014134 332 HFNI 335 (430)
Q Consensus 332 ~~~~ 335 (430)
.-..
T Consensus 496 IDEa 499 (780)
T 1gm5_A 496 IDEQ 499 (780)
T ss_dssp EESC
T ss_pred eccc
Confidence 5444
No 155
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.25 E-value=0.069 Score=49.40 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
+..+++.||+|+|||..+-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4689999999999997653
No 156
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.23 E-value=0.12 Score=46.38 Aligned_cols=17 Identities=0% Similarity=-0.408 Sum_probs=14.5
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
..++.||.|+|||..+.
T Consensus 20 ~~Lf~Gp~G~GKtt~a~ 36 (305)
T 2gno_A 20 SILINGEDLSYPREVSL 36 (305)
T ss_dssp EEEEECSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999997654
No 157
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.07 E-value=0.084 Score=47.86 Aligned_cols=42 Identities=19% Similarity=-0.012 Sum_probs=27.2
Q ss_pred CCCEEEEcCCCChHHHHhHHhh---hcCCCeEEEEc---chHHHHHHH
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVS---PLIALMENQ 94 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~---Pt~~L~~q~ 94 (430)
|.-+++.|++|+|||..++-.+ ...+..++|++ |..+++..+
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rl 93 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRA 93 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHH
Confidence 3458899999999996554222 23577888886 344444443
No 158
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.92 E-value=0.08 Score=48.17 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=15.7
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
.++++.||+|+|||..+-
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 589999999999997654
No 159
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.85 E-value=0.23 Score=47.08 Aligned_cols=33 Identities=15% Similarity=-0.162 Sum_probs=22.3
Q ss_pred CCEEEEcCCCChHHHHhHHhh---hc-CCCeEEEEcc
Q 014134 54 RDCFCLMPTGGGKSMCYQIPA---LA-KPGIVLVVSP 86 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~~~---l~-~~~~~lil~P 86 (430)
.-+++.|++|+|||..++-.+ .. .+.+++++..
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 457899999999996554222 22 3567888753
No 160
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.84 E-value=0.78 Score=38.78 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=14.0
Q ss_pred CEEEEcCCCChHHHHh
Q 014134 55 DCFCLMPTGGGKSMCY 70 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~ 70 (430)
.+++.||+|+|||..+
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999654
No 161
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.69 E-value=0.14 Score=48.77 Aligned_cols=34 Identities=15% Similarity=-0.069 Sum_probs=23.0
Q ss_pred CCCEEEEcCCCChHHHHhHHhh---h-cCCCeEEEEcc
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPA---L-AKPGIVLVVSP 86 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~---l-~~~~~~lil~P 86 (430)
|.-+++.|++|+|||..++-.+ . ..+..++|+..
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 4568899999999996554222 2 23557888763
No 162
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.62 E-value=0.56 Score=44.09 Aligned_cols=50 Identities=14% Similarity=0.234 Sum_probs=29.2
Q ss_pred cCCccEEEEecCccccccCCCcHHHHHHHHHHHhhC-CCCcEEEEEcCCCchhHH
Q 014134 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQK 209 (430)
Q Consensus 156 ~~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~SAT~~~~~~~ 209 (430)
....+++|+|.+-+... -...+..+..+.... |..-++.+.|+.......
T Consensus 180 ~~~~DvVIIDTaGrl~~----d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~ 230 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKE----DKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN 230 (443)
T ss_dssp HTTCSEEEEECCCCSSC----CHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH
T ss_pred hCCCCEEEEECCCcccc----hHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH
Confidence 34478999999976432 223334444433332 455588888887655443
No 163
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.62 E-value=0.071 Score=45.18 Aligned_cols=36 Identities=22% Similarity=0.029 Sum_probs=27.2
Q ss_pred CCCEEEEcCCCChHHHHhHHhh---hcCCCeEEEEcchH
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLI 88 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~Pt~ 88 (430)
|.=.++.|+.|+|||...+-.+ ..++.+++++-|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecC
Confidence 4456789999999997766443 34578899998875
No 164
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.53 E-value=0.059 Score=46.94 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
.+.+++.||+|+|||..+-
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 3579999999999997653
No 165
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.51 E-value=0.26 Score=44.91 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.9
Q ss_pred CCEEEEcCCCChHHHHh
Q 014134 54 RDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~ 70 (430)
.++++.||+|+|||..+
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56999999999999765
No 166
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.51 E-value=0.19 Score=43.10 Aligned_cols=50 Identities=14% Similarity=-0.042 Sum_probs=31.4
Q ss_pred cCCCEEEEcCCCChHHHHhHHh---hhcCCCeEEEEcchHHHHHHHHHHHHHcC
Q 014134 52 SGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKEKG 102 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~~~---~l~~~~~~lil~Pt~~L~~q~~~~~~~~~ 102 (430)
.|.-+++.||+|+|||..+.-. ....+..++++.-.. -..+..+.+..++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~~~g 74 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMAQFG 74 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHHTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHHHcC
Confidence 4567899999999999764322 234566788776432 2345555555444
No 167
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.50 E-value=0.073 Score=44.54 Aligned_cols=37 Identities=22% Similarity=0.025 Sum_probs=25.6
Q ss_pred CCCEEEEcCCCChHHHHhHHhh---hcCCCeEEEEcchHH
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA 89 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~Pt~~ 89 (430)
|.=.++.+|.|+|||...+-.+ ...+.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 4446789999999997655333 234678999998764
No 168
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.45 E-value=0.43 Score=44.77 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=28.7
Q ss_pred CCccEEEEecCcccc--ccCCCcHHHHHHHHHHHhh-CCCCcEEEEEcCCCchhHH
Q 014134 157 GLLNLVAIDEAHCIS--SWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQK 209 (430)
Q Consensus 157 ~~~~~lViDE~h~~~--~~~~~~~~~~~~l~~~~~~-~~~~~~i~~SAT~~~~~~~ 209 (430)
...+++|+|++.+.. . -...+..+..+... .|..-+++++|+.......
T Consensus 178 ~~~DvvIIDTaGr~~~~~----d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~ 229 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGE----ETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD 229 (433)
T ss_dssp TTCSEEEEEECCCSSSCC----TTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH
T ss_pred cCCCEEEEECCCCccccC----CHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH
Confidence 457899999998754 2 12223333333332 2455578888887655443
No 169
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.35 E-value=0.18 Score=45.35 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=14.8
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
++++.||+|+|||..+.
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 69999999999997653
No 170
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.20 E-value=0.13 Score=52.28 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=15.8
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
+.+++.||+|+|||+.+-
T Consensus 239 ~GILL~GPPGTGKT~LAr 256 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 679999999999998764
No 171
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.20 E-value=0.09 Score=49.37 Aligned_cols=78 Identities=8% Similarity=0.086 Sum_probs=64.3
Q ss_pred CCceEEEEeCccccHHHHHHHHHc---CCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecccc----ccccccCceE
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG----MGIDRKDVRL 329 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~---~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~----~Gidi~~~~~ 329 (430)
.+.++||.++++.-+.++++.+++ .++.+..+||+.+..++....+.+..|+.+|+|+|.-.- .-++...+++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 567899999999999999999988 578999999999999998889999999999999996422 1245567777
Q ss_pred EEEec
Q 014134 330 VCHFN 334 (430)
Q Consensus 330 vi~~~ 334 (430)
||.-.
T Consensus 143 iViDE 147 (414)
T 3oiy_A 143 VFVDD 147 (414)
T ss_dssp EEESC
T ss_pred EEEeC
Confidence 77533
No 172
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.14 E-value=0.77 Score=41.17 Aligned_cols=48 Identities=8% Similarity=-0.047 Sum_probs=29.8
Q ss_pred HHHHHHc----CCCEEEEcCCCChHHHHhHHh---hhcCCCeEEEEc---chHHHHHH
Q 014134 46 AIQAVLS----GRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVS---PLIALMEN 93 (430)
Q Consensus 46 ~~~~l~~----~~~~lv~a~tGsGKT~~~~~~---~l~~~~~~lil~---Pt~~L~~q 93 (430)
.+..++. |.-+++.|++|+|||..++-. +..++..+++++ |..++...
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R 114 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKR 114 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHH
Confidence 3444443 456889999999999654422 233456788886 34444443
No 173
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.11 E-value=0.23 Score=46.38 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=14.4
Q ss_pred CCEEE--EcCCCChHHHHhH
Q 014134 54 RDCFC--LMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv--~a~tGsGKT~~~~ 71 (430)
..+++ .||+|+|||....
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 35778 8999999997653
No 174
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.03 E-value=0.29 Score=41.13 Aligned_cols=33 Identities=21% Similarity=0.081 Sum_probs=23.5
Q ss_pred CCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEc
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~ 85 (430)
|.-+++.||+|+|||..+...+...+..++++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGLLSGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 456889999999999665433334566777775
No 175
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.90 E-value=0.37 Score=43.17 Aligned_cols=16 Identities=19% Similarity=0.071 Sum_probs=14.2
Q ss_pred CEEEEcCCCChHHHHh
Q 014134 55 DCFCLMPTGGGKSMCY 70 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~ 70 (430)
++++.||+|+|||..+
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 5999999999999765
No 176
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.40 E-value=0.16 Score=41.86 Aligned_cols=35 Identities=23% Similarity=0.050 Sum_probs=25.6
Q ss_pred CCCEEEEcCCCChHHHHhHHhh---hcCCCeEEEEcch
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPL 87 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~Pt 87 (430)
++=.++.||+|+|||.-.+-.+ ..++.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 4557889999999996544333 2346789998887
No 177
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.30 E-value=1.4 Score=39.85 Aligned_cols=18 Identities=22% Similarity=0.058 Sum_probs=15.2
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
..+++.||.|+|||....
T Consensus 31 ~~v~i~G~~G~GKT~L~~ 48 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIK 48 (357)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 578999999999996543
No 178
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.11 E-value=1.2 Score=40.65 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=14.2
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
.+++.||+|+|||..+.
T Consensus 40 ~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47999999999997653
No 179
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.98 E-value=0.76 Score=38.77 Aligned_cols=34 Identities=18% Similarity=0.038 Sum_probs=22.3
Q ss_pred cCCCEEEEcCCCChHHHHhHHhh---hcCCCeEEEEc
Q 014134 52 SGRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVS 85 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~ 85 (430)
.|.-+++.||+|+|||......+ ...+..++++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 35678899999999996543222 23355676664
No 180
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.96 E-value=0.072 Score=41.77 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=17.1
Q ss_pred cCCCEEEEcCCCChHHHHhH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~ 71 (430)
.+.++++.||+|+|||..+-
T Consensus 23 ~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHH
Confidence 45799999999999997764
No 181
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.96 E-value=1.8 Score=38.55 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=20.0
Q ss_pred CEEEEcCCCChHHHHhH-Hhh-h-cCCCeEEEEc
Q 014134 55 DCFCLMPTGGGKSMCYQ-IPA-L-AKPGIVLVVS 85 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~-~~~-l-~~~~~~lil~ 85 (430)
-+++.+|+|+|||.... ++. + ..+.+++++.
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 47789999999996543 222 2 3455666554
No 182
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.84 E-value=0.14 Score=48.77 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=15.5
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
+.+++.||+|+|||..+-
T Consensus 50 ~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 579999999999997653
No 183
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.83 E-value=0.093 Score=46.96 Aligned_cols=21 Identities=10% Similarity=-0.005 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCChHHHHhHH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~~ 72 (430)
.+..+++.+|+|+|||..+..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHA 142 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 345578999999999966543
No 184
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.69 E-value=0.44 Score=43.39 Aligned_cols=57 Identities=9% Similarity=0.016 Sum_probs=32.7
Q ss_pred HHHHHHcC-----CCEEEEcCCCChHHHHhHHhhhc---------CCCeEEEEcchHHH-HHHHHHHHHHcC
Q 014134 46 AIQAVLSG-----RDCFCLMPTGGGKSMCYQIPALA---------KPGIVLVVSPLIAL-MENQVIGLKEKG 102 (430)
Q Consensus 46 ~~~~l~~~-----~~~lv~a~tGsGKT~~~~~~~l~---------~~~~~lil~Pt~~L-~~q~~~~~~~~~ 102 (430)
.+..++.| .-+++.||+|+|||..++-.+.. .+.+++|+.-...+ ..++.+.+..++
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g 181 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFN 181 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTT
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcC
Confidence 35555542 45789999999999765533321 35678887644321 223334444444
No 185
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=92.66 E-value=1.8 Score=38.94 Aligned_cols=19 Identities=21% Similarity=-0.083 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
++.+++.||.|+|||....
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~ 49 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLR 49 (350)
T ss_dssp CSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 5789999999999997543
No 186
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.51 E-value=0.41 Score=51.16 Aligned_cols=76 Identities=9% Similarity=0.086 Sum_probs=64.6
Q ss_pred CCceEEEEeCccccHHHHHHHHHcC----CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEec-cccccccccCceEEE
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-AFGMGIDRKDVRLVC 331 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gidi~~~~~vi 331 (430)
.+.+++|.++++.-+.+.++.+++. +..+..++|..+..++...++.+.+|+.+|+|+|. .+...+++.++++||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 5679999999999999888888743 56788999999999999999999999999999994 455568888888877
Q ss_pred E
Q 014134 332 H 332 (430)
Q Consensus 332 ~ 332 (430)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 4
No 187
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.40 E-value=0.44 Score=41.15 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=14.9
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
+.+++.||+|+|||..+-
T Consensus 50 ~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 459999999999996553
No 188
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.23 E-value=0.19 Score=45.28 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.7
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
..+++.||+|+|||..+-
T Consensus 39 ~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCEEECCTTCCCHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 689999999999997653
No 189
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.21 E-value=0.72 Score=47.72 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=15.4
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
+++++.||+|+|||..+-
T Consensus 192 ~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCEEEECTTSCHHHHHH
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 589999999999997653
No 190
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.61 E-value=2.3 Score=37.17 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=17.8
Q ss_pred HHcCCCEEEEcCCCChHHHHhH
Q 014134 50 VLSGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 50 l~~~~~~lv~a~tGsGKT~~~~ 71 (430)
+..|.-+++.||+|+|||..+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~ 48 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLAL 48 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHH
Confidence 4467788999999999996654
No 191
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.55 E-value=2.3 Score=40.07 Aligned_cols=34 Identities=12% Similarity=-0.057 Sum_probs=23.9
Q ss_pred CCCEEEEcCCCChHHHHhHHh---hhcCCCeEEEEcc
Q 014134 53 GRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSP 86 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~---~l~~~~~~lil~P 86 (430)
|.-+++.|++|+|||..++-. +..++.+++|++-
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 345889999999999655422 2334678888863
No 192
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=91.36 E-value=0.28 Score=52.09 Aligned_cols=78 Identities=8% Similarity=0.089 Sum_probs=64.6
Q ss_pred CCceEEEEeCccccHHHHHHHHHc---CCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecccc-c---cccccCceE
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG-M---GIDRKDVRL 329 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~---~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~-~---Gidi~~~~~ 329 (430)
.+.++||.++++.-+.++++.+++ .++.+..+||+++..+|....+.+.+|+.+|+|+|.-.- . -++..++++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 567899999999999999999998 467899999999998888899999999999999996321 1 245677888
Q ss_pred EEEec
Q 014134 330 VCHFN 334 (430)
Q Consensus 330 vi~~~ 334 (430)
+|.-.
T Consensus 200 lViDE 204 (1104)
T 4ddu_A 200 VFVDD 204 (1104)
T ss_dssp EEESC
T ss_pred EEEeC
Confidence 87644
No 193
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.28 E-value=0.3 Score=44.06 Aligned_cols=57 Identities=16% Similarity=0.103 Sum_probs=33.2
Q ss_pred HHHHHHc-----CCCEEEEcCCCChHHHHhHHhhh---cC------CCeEEEEcchHHH-HHHHHHHHHHcC
Q 014134 46 AIQAVLS-----GRDCFCLMPTGGGKSMCYQIPAL---AK------PGIVLVVSPLIAL-MENQVIGLKEKG 102 (430)
Q Consensus 46 ~~~~l~~-----~~~~lv~a~tGsGKT~~~~~~~l---~~------~~~~lil~Pt~~L-~~q~~~~~~~~~ 102 (430)
.+..++. |.-+++.||+|+|||..++-.+. .. +.+++|+.-...+ ..++.+.+..++
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g 166 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALG 166 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhC
Confidence 4555553 35688999999999966543332 12 5678887644321 234444445544
No 194
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.03 E-value=0.62 Score=42.74 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=16.8
Q ss_pred CCCEEEEcCCCChHHHHhHH
Q 014134 53 GRDCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~ 72 (430)
..++++.||+|+|||..+-.
T Consensus 51 ~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46899999999999987643
No 195
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.01 E-value=0.71 Score=47.08 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCChHHHHh
Q 014134 53 GRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~ 70 (430)
++++++.||+|+|||..+
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 468999999999999765
No 196
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.91 E-value=1.8 Score=38.35 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=21.2
Q ss_pred CCCEEEEcCCCChHHHHhH-Hh-hh--cCCCeEEEEc
Q 014134 53 GRDCFCLMPTGGGKSMCYQ-IP-AL--AKPGIVLVVS 85 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~-~~-~l--~~~~~~lil~ 85 (430)
++-+++.+|+|+|||.... ++ .+ .++.+++++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3467899999999996553 22 22 2455666653
No 197
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.88 E-value=0.52 Score=40.22 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=22.8
Q ss_pred cCCCEEEEcCCCChHHHHhHHhhh---c------CCCeEEEEc
Q 014134 52 SGRDCFCLMPTGGGKSMCYQIPAL---A------KPGIVLVVS 85 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~~~~l---~------~~~~~lil~ 85 (430)
.|.-+.+.+|+|+|||..+...+. . ....++++.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 346688999999999976543322 2 145677765
No 198
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=90.86 E-value=0.7 Score=40.53 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=14.9
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
+.+++.+|+|+|||..+-
T Consensus 74 ~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcChHHHHHH
Confidence 459999999999996553
No 199
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=90.62 E-value=1.1 Score=38.41 Aligned_cols=73 Identities=18% Similarity=0.286 Sum_probs=52.7
Q ss_pred CCceEEEEeCccccHHHHHHHHHcC----CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc-----cc--cccccc
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FG--MGIDRK 325 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~~--~Gidi~ 325 (430)
.+.++||.++++.-+.++++.+++. +..+..++|+.+...+...+ .+..+|+|+|.- +. .++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 4557999999999998888877654 77888999998876554333 356789999952 11 346677
Q ss_pred CceEEEEe
Q 014134 326 DVRLVCHF 333 (430)
Q Consensus 326 ~~~~vi~~ 333 (430)
.++++|.-
T Consensus 186 ~~~~lViD 193 (249)
T 3ber_A 186 ALKYLVMD 193 (249)
T ss_dssp TCCEEEEC
T ss_pred ccCEEEEc
Confidence 77777753
No 200
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=90.20 E-value=0.45 Score=45.42 Aligned_cols=51 Identities=14% Similarity=0.036 Sum_probs=41.5
Q ss_pred cCCCEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcC
Q 014134 52 SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG 102 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~ 102 (430)
.+....+.+-+|+|||++..-.+-..+..+|||+|+...|.|++.+++.+.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHTC
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhC
Confidence 355788999999999986544444446679999999999999999999863
No 201
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.01 E-value=0.081 Score=45.61 Aligned_cols=48 Identities=13% Similarity=-0.065 Sum_probs=28.7
Q ss_pred CCCEEEEcCCCChHHHHhHHhh----hcCCCeEEEEcchHHHHHHHHHHHHHc
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPLIALMENQVIGLKEK 101 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~----l~~~~~~lil~Pt~~L~~q~~~~~~~~ 101 (430)
|.-+++.|++|+|||..++-.+ ...+..++|++-. +-..++.+.+...
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc-CCHHHHHHHHHHc
Confidence 4568899999999996554222 2335667776532 2234445555443
No 202
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=89.99 E-value=0.68 Score=41.14 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.3
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
..++++.||+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5689999999999997653
No 203
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=89.89 E-value=0.64 Score=39.02 Aligned_cols=74 Identities=16% Similarity=0.207 Sum_probs=54.6
Q ss_pred CceEEEEeCccccHHHHHHHHHcC-----CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc-c-----cccccccC
Q 014134 258 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-F-----GMGIDRKD 326 (430)
Q Consensus 258 ~~~~iVf~~s~~~~~~l~~~l~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~-~-----~~Gidi~~ 326 (430)
+.++||.++++.-+.++++.+++. +..+..++|+.+..++.. .+.++..+|+|+|.- + ...+++..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999988887764 678889999988766543 345577789999953 1 12356777
Q ss_pred ceEEEEec
Q 014134 327 VRLVCHFN 334 (430)
Q Consensus 327 ~~~vi~~~ 334 (430)
++++|.-.
T Consensus 159 ~~~lViDE 166 (220)
T 1t6n_A 159 IKHFILDE 166 (220)
T ss_dssp CCEEEEES
T ss_pred CCEEEEcC
Confidence 88877543
No 204
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.81 E-value=0.58 Score=40.08 Aligned_cols=34 Identities=18% Similarity=0.075 Sum_probs=22.4
Q ss_pred cCCCEEEEcCCCChHHHHhHH-h--hh-cCCCeEEEEc
Q 014134 52 SGRDCFCLMPTGGGKSMCYQI-P--AL-AKPGIVLVVS 85 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~~-~--~l-~~~~~~lil~ 85 (430)
.|.-+.+.||+|+|||..... . .+ .....++++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 467789999999999965542 2 22 3444555554
No 205
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.75 E-value=0.48 Score=48.56 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
++.+++.||+|+|||..+-
T Consensus 238 ~~~vLL~Gp~GtGKTtLar 256 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCEEEECSCTTSSHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 5689999999999997653
No 206
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=89.69 E-value=0.4 Score=46.00 Aligned_cols=30 Identities=33% Similarity=0.358 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCChHHHHhH
Q 014134 42 KQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 42 ~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~ 71 (430)
.-..+.-.+..+.++++.||+|+|||..+-
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHHHH
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHHHH
Confidence 334455556678999999999999997653
No 207
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.57 E-value=0.36 Score=53.83 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=31.1
Q ss_pred HHHHHHc------CCCEEEEcCCCChHHHHhHH---hhhcCCCeEEEEcchH
Q 014134 46 AIQAVLS------GRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLI 88 (430)
Q Consensus 46 ~~~~l~~------~~~~lv~a~tGsGKT~~~~~---~~l~~~~~~lil~Pt~ 88 (430)
.+..++. ++++++.+|+|+|||..+.. .+..++.+++++..-.
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1465 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc
Confidence 3666666 57899999999999966542 2345677888887654
No 208
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=89.27 E-value=0.46 Score=46.28 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
+..+++.+|+|+|||..+-
T Consensus 108 g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp SCEEEEESSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5689999999999997653
No 209
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=89.12 E-value=2.6 Score=40.30 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=15.2
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
+.+++.+|+|+|||..+-
T Consensus 65 ~GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp SEEEEECSSSSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 459999999999997653
No 210
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=89.06 E-value=0.7 Score=44.80 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=54.6
Q ss_pred CceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEec
Q 014134 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (430)
Q Consensus 258 ~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (430)
.+++||.++++.-+.+..+.|++.|+.+..+||+.+..++..+...+..|..+++++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 45799999999999999999999999999999999999999999999999999999985
No 211
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=88.58 E-value=0.87 Score=38.55 Aligned_cols=71 Identities=14% Similarity=0.195 Sum_probs=51.3
Q ss_pred CCceEEEEeCccccHHHHHHHHHcC-----CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccc------ccccccc
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRK 325 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~------~~Gidi~ 325 (430)
.+.++||.+++++-+.++++.+++. +..+..++|+.+..++...+ ...+|+|+|.-. ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 4568999999999999999888763 56788899998876654432 357899998631 1235566
Q ss_pred CceEEEE
Q 014134 326 DVRLVCH 332 (430)
Q Consensus 326 ~~~~vi~ 332 (430)
.++++|.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 6766664
No 212
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=88.26 E-value=3.7 Score=33.53 Aligned_cols=89 Identities=21% Similarity=0.150 Sum_probs=59.9
Q ss_pred CChHHHHhHHhhh-cCCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccc
Q 014134 63 GGGKSMCYQIPAL-AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141 (430)
Q Consensus 63 GsGKT~~~~~~~l-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 141 (430)
...|... +..++ ..+.++||.++++.-+..+.+.+...+.......+......+.............+ +|
T Consensus 39 ~~~K~~~-L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~v--------Lv 109 (191)
T 2p6n_A 39 EEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV--------LV 109 (191)
T ss_dssp GGGHHHH-HHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSE--------EE
T ss_pred hHHHHHH-HHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEE--------EE
Confidence 3467644 34444 34678999999999999999999998888888888877777766666666554333 67
Q ss_pred cChhHHHHHHHhhhcCCccEEEE
Q 014134 142 ATPGFMSKLKKIHSRGLLNLVAI 164 (430)
Q Consensus 142 ~T~~~~~~~~~~~~~~~~~~lVi 164 (430)
+|.. ...-.+...+++||.
T Consensus 110 aT~~----~~~Gldi~~v~~VI~ 128 (191)
T 2p6n_A 110 ATDV----ASKGLDFPAIQHVIN 128 (191)
T ss_dssp ECHH----HHTTCCCCCCSEEEE
T ss_pred EcCc----hhcCCCcccCCEEEE
Confidence 7731 222233444566655
No 213
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=88.17 E-value=0.77 Score=45.24 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=53.6
Q ss_pred CceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHh--hcCCceEEEEec
Q 014134 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW--ISSRKQVVVATV 316 (430)
Q Consensus 258 ~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f--~~g~~~vLv~T~ 316 (430)
.+.+||.++++.-+.+.++.|.+.|+.+..++|+++..++..+...+ ..+..+|+++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 45899999999999999999999999999999999999999888888 478899999997
No 214
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=88.05 E-value=0.35 Score=42.47 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=30.4
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCccchHHH-HHHHHHHH--cCCCEEEEcCCCChHHHHhH
Q 014134 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQ-LDAIQAVL--SGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q-~~~~~~l~--~~~~~lv~a~tGsGKT~~~~ 71 (430)
+...|.+++-.+++.+.|.+..- .|+. .+++..+- -.+.+++.||+|+|||..+-
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~----~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL----APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAK 62 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT----HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH----HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHH
Confidence 45678888888888888886321 1111 22333321 12459999999999997653
No 215
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=87.90 E-value=1.3 Score=37.79 Aligned_cols=72 Identities=8% Similarity=0.112 Sum_probs=52.6
Q ss_pred CCceEEEEeCccccHHHHHHHHHc----CCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEec-----cccc-cccccC
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGM-GIDRKD 326 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~-Gidi~~ 326 (430)
.+.++||.+++++-+.++++.+++ .+..+..++|+.+.......+. ...+|+|+|. .+.. .+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE----RGVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCCccc
Confidence 356799999999999888877765 3788899999998776654443 2478999995 2222 356777
Q ss_pred ceEEEE
Q 014134 327 VRLVCH 332 (430)
Q Consensus 327 ~~~vi~ 332 (430)
++++|.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 887775
No 216
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=87.86 E-value=1.9 Score=40.01 Aligned_cols=33 Identities=18% Similarity=0.008 Sum_probs=21.9
Q ss_pred CCEEEEcCCCChHHHHhHHhh---hc------CCCeEEEEcc
Q 014134 54 RDCFCLMPTGGGKSMCYQIPA---LA------KPGIVLVVSP 86 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~~~---l~------~~~~~lil~P 86 (430)
.-+.+.+|+|+|||......+ +. .+..++++.-
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 457899999999996655221 21 2456777753
No 217
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=87.82 E-value=0.73 Score=41.21 Aligned_cols=33 Identities=15% Similarity=0.033 Sum_probs=21.9
Q ss_pred CCCEEEEcCCCChHHHHhHHh---hh-cCCCeEEEEc
Q 014134 53 GRDCFCLMPTGGGKSMCYQIP---AL-AKPGIVLVVS 85 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~---~l-~~~~~~lil~ 85 (430)
++++++.||+|+|||..+... +. .++..++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 578999999999999654321 22 4455555543
No 218
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=87.81 E-value=3.1 Score=40.00 Aligned_cols=35 Identities=14% Similarity=-0.090 Sum_probs=23.8
Q ss_pred cCCCEEEEcCCCChHHHHhHHhh---hcC-CCeEEEEcc
Q 014134 52 SGRDCFCLMPTGGGKSMCYQIPA---LAK-PGIVLVVSP 86 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~~~~---l~~-~~~~lil~P 86 (430)
.|.-+++.|++|+|||..++-.+ ..+ +.+++|++-
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 34568899999999996654222 233 567888763
No 219
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=87.54 E-value=0.37 Score=38.99 Aligned_cols=54 Identities=9% Similarity=-0.052 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHcC--CCEEEEcCCCChHHHHhH---Hhhh-cCCCeEEEEcchHHHHHH
Q 014134 40 RDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQ---IPAL-AKPGIVLVVSPLIALMEN 93 (430)
Q Consensus 40 ~~~Q~~~~~~l~~~--~~~lv~a~tGsGKT~~~~---~~~l-~~~~~~lil~Pt~~L~~q 93 (430)
.+-|..++..++.. .-.++.++-|++||...+ +.+. +.+.++.+|+|+..-...
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHH
Confidence 45688899988754 356788999999997733 2222 568899999999876554
No 220
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.33 E-value=0.59 Score=39.08 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=27.8
Q ss_pred CccchHHHHHHHHHHHcCCCEEEEcCCCChHHHHh
Q 014134 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 36 ~~~~~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~ 70 (430)
+..-+.-|..++..+..|.-+.+.+|.|+|||...
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 34445567778888888999999999999999654
No 221
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=87.16 E-value=0.71 Score=41.64 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=20.1
Q ss_pred HHHHHHcCCCEEEEcCCCChHHHHhH
Q 014134 46 AIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 46 ~~~~l~~~~~~lv~a~tGsGKT~~~~ 71 (430)
+...+..++++++.||+|+|||..+-
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHHHcCCeEEEECCCCCcHHHHHH
Confidence 33444568899999999999996653
No 222
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=87.13 E-value=6.6 Score=37.35 Aligned_cols=30 Identities=13% Similarity=0.172 Sum_probs=19.7
Q ss_pred CEEEEcCCCChHHHHhH-Hhh-h-cCCCeEEEE
Q 014134 55 DCFCLMPTGGGKSMCYQ-IPA-L-AKPGIVLVV 84 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~-~~~-l-~~~~~~lil 84 (430)
-+.+.|++|+|||.... ++- + ..+..+++.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 47799999999996543 222 2 235666665
No 223
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=87.10 E-value=0.55 Score=38.40 Aligned_cols=36 Identities=22% Similarity=0.096 Sum_probs=26.3
Q ss_pred CCCEEEEcCCCChHHHHhHHhh---hcCCCeEEEEcchH
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLI 88 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~Pt~ 88 (430)
+.-.++.||+|+|||..++-.+ ..++.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 4557899999999998764333 23577899988884
No 224
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=86.25 E-value=0.48 Score=41.22 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=16.8
Q ss_pred cCCCEEEEcCCCChHHHHhH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~ 71 (430)
.+.++++.||+|+|||..+-
T Consensus 28 ~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHH
Confidence 45789999999999997653
No 225
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=85.74 E-value=2.3 Score=38.68 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=28.0
Q ss_pred HHHHHHHc------CCCEEEEcCCCChHHHHhHHhh---hcCCCeEEEEcc
Q 014134 45 DAIQAVLS------GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSP 86 (430)
Q Consensus 45 ~~~~~l~~------~~~~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~P 86 (430)
..+..++. |.-+++.+|+|+|||..++..+ ...+.+++|+.-
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 35666665 3458899999999997654322 244667777764
No 226
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=85.62 E-value=0.78 Score=44.21 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=22.3
Q ss_pred chHHHHHHHHH-HHcCCCEEEEcCCCChHHHHh
Q 014134 39 FRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 39 ~~~~Q~~~~~~-l~~~~~~lv~a~tGsGKT~~~ 70 (430)
+++.+...+.. +..|..+++.||||||||...
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 34444444444 346778999999999999653
No 227
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=85.62 E-value=2.9 Score=38.39 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
..++++.||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4589999999999997664
No 228
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=85.55 E-value=1.1 Score=40.73 Aligned_cols=42 Identities=17% Similarity=0.122 Sum_probs=27.5
Q ss_pred HHHHHHc------CCCEEEEcCCCChHHHHhHHhhh---cCCCeEEEEcch
Q 014134 46 AIQAVLS------GRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPL 87 (430)
Q Consensus 46 ~~~~l~~------~~~~lv~a~tGsGKT~~~~~~~l---~~~~~~lil~Pt 87 (430)
.++.++. |.-+++.+|+|+|||...+..+. ..+.+++|+..-
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 4555565 34578999999999965543222 346678887654
No 229
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=85.45 E-value=1.2 Score=36.98 Aligned_cols=43 Identities=28% Similarity=0.414 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCccchHHHHHHHHHHHcC----CCEEEEcCCCChHHHHh
Q 014134 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 25 ~~~~~l~~~~g~~~~~~~Q~~~~~~l~~~----~~~lv~a~tGsGKT~~~ 70 (430)
.+.+.|+ |....+-.. ...+..++++ +.+++.||+|+|||..+
T Consensus 29 ~I~~~l~--yq~~~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 29 PIVQFLR--YQQIEFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHH--HTTCCHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHH--HcCcCHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 4444454 222334444 4455555554 35999999999999655
No 230
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=85.32 E-value=0.72 Score=43.50 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=31.6
Q ss_pred cCCCEEEEcCCCChHHHHh--HHh-hhcCCCeEEEEcchHHHHH
Q 014134 52 SGRDCFCLMPTGGGKSMCY--QIP-ALAKPGIVLVVSPLIALME 92 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~--~~~-~l~~~~~~lil~Pt~~L~~ 92 (430)
...++++.|+||+|||... +++ ++..+..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 3579999999999999875 232 3456778888889888864
No 231
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=83.94 E-value=2.6 Score=34.61 Aligned_cols=72 Identities=18% Similarity=0.123 Sum_probs=50.0
Q ss_pred CCceEEEEeCccccHHHHHHHHHcC-----CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc-----ccc-ccccc
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGM-GIDRK 325 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~~~-Gidi~ 325 (430)
.+.++||.++++.-+.++++.+.+. +..+..++|+.+..+.... + .+..+|+|+|.- +.. .+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 3457999999999999988887653 5678889999876544322 2 356789999962 222 24566
Q ss_pred CceEEEE
Q 014134 326 DVRLVCH 332 (430)
Q Consensus 326 ~~~~vi~ 332 (430)
+++++|.
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 6777664
No 232
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=83.87 E-value=0.51 Score=39.06 Aligned_cols=20 Identities=20% Similarity=0.085 Sum_probs=17.0
Q ss_pred cCCCEEEEcCCCChHHHHhH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~ 71 (430)
.++.+++.|++|||||..+-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 46789999999999997754
No 233
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=83.86 E-value=1.6 Score=37.13 Aligned_cols=74 Identities=19% Similarity=0.252 Sum_probs=45.2
Q ss_pred CCceEEEEeCccccHHHHHHHHHcC----CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEec-----ccccc-ccccC
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKD 326 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~G-idi~~ 326 (430)
.+.++||.++++.-+.++++.+++. +..+...+|+.+... ..+.+..+..+|+|+|. .+..+ +++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999999999999888764 456677777765432 23445567789999994 23333 56667
Q ss_pred ceEEEEe
Q 014134 327 VRLVCHF 333 (430)
Q Consensus 327 ~~~vi~~ 333 (430)
++++|.-
T Consensus 174 ~~~lViD 180 (237)
T 3bor_A 174 IKMFVLD 180 (237)
T ss_dssp CCEEEEE
T ss_pred CcEEEEC
Confidence 7777753
No 234
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=83.85 E-value=0.73 Score=41.02 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=15.2
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
..+++.||+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 369999999999997653
No 235
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=83.52 E-value=1.9 Score=39.32 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=28.6
Q ss_pred HHHHHHHc------CCCEEEEcCCCChHHHHhHHhh---hcCCCeEEEEcc
Q 014134 45 DAIQAVLS------GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSP 86 (430)
Q Consensus 45 ~~~~~l~~------~~~~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~P 86 (430)
..+..++. +.-+++.+++|+|||..++-.+ ...+.+++|+..
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 35666664 3458899999999997654322 245667888765
No 236
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=83.21 E-value=0.67 Score=41.35 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=16.8
Q ss_pred cCCCEEEEcCCCChHHHHhH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~ 71 (430)
.+.++++.||+|+|||..+-
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHH
Confidence 35689999999999997653
No 237
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=83.17 E-value=1.8 Score=36.66 Aligned_cols=71 Identities=11% Similarity=0.132 Sum_probs=48.0
Q ss_pred CCceEEEEeCccccHHHHHHHHHcC----CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc-c----cc--ccccc
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-F----GM--GIDRK 325 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~-~----~~--Gidi~ 325 (430)
.+.++||.++++.-+.++++.+++. +..+..++|+.+.......+ +..+|+|+|.- + .. .++..
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 4568999999999999999888764 46788889987655443322 46789999952 2 12 25556
Q ss_pred CceEEEE
Q 014134 326 DVRLVCH 332 (430)
Q Consensus 326 ~~~~vi~ 332 (430)
+++++|.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 6766664
No 238
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=83.05 E-value=0.97 Score=40.31 Aligned_cols=36 Identities=11% Similarity=-0.012 Sum_probs=24.8
Q ss_pred CEEEEcCCCChHHHHhHHhh---hcC--CCeEEEEcchHHH
Q 014134 55 DCFCLMPTGGGKSMCYQIPA---LAK--PGIVLVVSPLIAL 90 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~~~---l~~--~~~~lil~Pt~~L 90 (430)
-+.+.+|+|+|||...+-.+ ..+ +.+++|+..-..+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchh
Confidence 47899999999997655333 222 6788888765444
No 239
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=82.95 E-value=0.6 Score=37.92 Aligned_cols=20 Identities=15% Similarity=0.110 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCChHHHHhH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~ 71 (430)
.|+-+++.||+|+|||...-
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45678899999999997553
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=82.89 E-value=0.6 Score=38.61 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=15.0
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.|+-+.+.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999654
No 241
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=82.85 E-value=4.2 Score=44.92 Aligned_cols=93 Identities=15% Similarity=0.203 Sum_probs=60.0
Q ss_pred HHHHHHc------CCCEEEEcCCCChHHHHhHHhh---hcCCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHH
Q 014134 46 AIQAVLS------GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (430)
Q Consensus 46 ~~~~l~~------~~~~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~ 116 (430)
.+..++. |+-+.+.+|.|||||..++-.+ ..++..++++.+-.+|.... ++++|++...+
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~---~~~~Gv~~~~l-------- 1486 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDNL-------- 1486 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCCGGGC--------
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH---HHHcCCCHHHe--------
Confidence 4555554 3568899999999998766444 35688899998877665543 55666543221
Q ss_pred HHHHHhhhhcCCCceeEEEECCccccChhH----HHHHHHhhhcCCccEEEEecCccccc
Q 014134 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGF----MSKLKKIHSRGLLNLVAIDEAHCISS 172 (430)
Q Consensus 117 ~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~----~~~~~~~~~~~~~~~lViDE~h~~~~ 172 (430)
++..|.. +...........+++||+|.+-.+..
T Consensus 1487 -----------------------~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1487 -----------------------LCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp -----------------------EEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred -----------------------EEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 4444432 22223334455688999999998865
No 242
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=82.65 E-value=0.86 Score=41.08 Aligned_cols=18 Identities=28% Similarity=0.157 Sum_probs=14.8
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
+-+++.||||+|||..+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358899999999997653
No 243
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=82.63 E-value=0.6 Score=37.92 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
.+.+++.|++|||||..+-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4678999999999997664
No 244
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=82.52 E-value=1.2 Score=38.64 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHhcCCccchHHHHH-HHHHHHcCC-----CEEEEcCCCChHHHHhH
Q 014134 22 EKEALVKLLRWHFGHAQFRDKQLD-AIQAVLSGR-----DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 22 ~~~~~~~~l~~~~g~~~~~~~Q~~-~~~~l~~~~-----~~lv~a~tGsGKT~~~~ 71 (430)
.-..+.+.|+- -|+. +.+.. ++...++++ .+++.||+|+|||..+.
T Consensus 71 ~~n~i~~~l~~-qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 71 SSNRIYKILEL-NGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp GGCHHHHHHHH-TTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred chHHHHHHHHH-cCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 34456666654 4654 45533 355555543 59999999999997664
No 245
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=82.38 E-value=2.4 Score=38.75 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=28.3
Q ss_pred HHHHHHHc------CCCEEEEcCCCChHHHHhHHhh---hcCCCeEEEEcch
Q 014134 45 DAIQAVLS------GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPL 87 (430)
Q Consensus 45 ~~~~~l~~------~~~~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~Pt 87 (430)
..+..++. |.-+++.+|+|+|||..++-.+ ...+.+++|+..-
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 35666665 2457889999999996654322 2345677777643
No 246
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=82.28 E-value=2.4 Score=35.67 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=46.7
Q ss_pred CCceEEEEeCccccHHHHHHHHHcC---CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccc------cccccccCc
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKDV 327 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~---~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~------~~Gidi~~~ 327 (430)
.+.++||.++++.-+.++++.+++. +..+..++|+.+..++...+ . ...+|+|+|.-. ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4567999999999999999888763 67788888887655443322 2 347899999521 124556777
Q ss_pred eEEEE
Q 014134 328 RLVCH 332 (430)
Q Consensus 328 ~~vi~ 332 (430)
+++|.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 77664
No 247
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=82.27 E-value=0.63 Score=37.48 Aligned_cols=19 Identities=21% Similarity=0.022 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
+.-+++.|++|||||.++-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568899999999998764
No 248
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=82.00 E-value=4.4 Score=31.95 Aligned_cols=64 Identities=9% Similarity=0.131 Sum_probs=47.5
Q ss_pred ChHHHHhHHhhh--cCCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCC
Q 014134 64 GGKSMCYQIPAL--AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (430)
Q Consensus 64 sGKT~~~~~~~l--~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (430)
..|... +..++ ....++||.++++..+..+.+.+...+.......+......+...........
T Consensus 20 ~~K~~~-L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 85 (163)
T 2hjv_A 20 ENKFSL-LKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE 85 (163)
T ss_dssp GGHHHH-HHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred HHHHHH-HHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 456533 33333 24568999999999999999999999988888888877777766666665544
No 249
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=81.97 E-value=0.54 Score=39.07 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=17.5
Q ss_pred HHcCCCEEEEcCCCChHHHHh
Q 014134 50 VLSGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 50 l~~~~~~lv~a~tGsGKT~~~ 70 (430)
+..+.-++++||+|+|||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 456778999999999999754
No 250
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=81.93 E-value=3.1 Score=34.19 Aligned_cols=74 Identities=19% Similarity=0.123 Sum_probs=51.5
Q ss_pred CCceEEEEeCccccHHHHHHHHHcC--CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc-----ccc-cccccCce
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGM-GIDRKDVR 328 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~~~-Gidi~~~~ 328 (430)
.+.+++|.++++.-+.++++.+++. +..+..++|+.+.......+. +..+|+|+|.- +.. .+++..++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 4568999999999999999998875 456788888877654433332 25779999952 222 35667777
Q ss_pred EEEEec
Q 014134 329 LVCHFN 334 (430)
Q Consensus 329 ~vi~~~ 334 (430)
++|.-.
T Consensus 147 ~iViDE 152 (207)
T 2gxq_A 147 VAVLDE 152 (207)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 777533
No 251
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=81.93 E-value=3.2 Score=37.99 Aligned_cols=73 Identities=19% Similarity=0.285 Sum_probs=54.1
Q ss_pred CCceEEEEeCccccHHHHHHHHHcC-----CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc-c-----ccccccc
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-F-----GMGIDRK 325 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~-~-----~~Gidi~ 325 (430)
.+.++||.|+++.-+.++++.+.+. +..+..++|+.+..+.... +..+..+|+|+|.- + ...+++.
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~ 151 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLK 151 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCcccc
Confidence 3558999999999999988887764 6788999999887665443 44577889999953 2 1235667
Q ss_pred CceEEEE
Q 014134 326 DVRLVCH 332 (430)
Q Consensus 326 ~~~~vi~ 332 (430)
.+++||.
T Consensus 152 ~~~~vVi 158 (391)
T 1xti_A 152 HIKHFIL 158 (391)
T ss_dssp TCSEEEE
T ss_pred ccCEEEE
Confidence 7787774
No 252
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=81.92 E-value=0.62 Score=37.22 Aligned_cols=19 Identities=21% Similarity=0.104 Sum_probs=15.1
Q ss_pred CEEEEcCCCChHHHHhHHh
Q 014134 55 DCFCLMPTGGGKSMCYQIP 73 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~~ 73 (430)
-+++.|++|||||..+-..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3679999999999876433
No 253
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=81.84 E-value=1.2 Score=41.67 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHc--CCCEEEEcCCCChHHHHh
Q 014134 41 DKQLDAIQAVLS--GRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 41 ~~Q~~~~~~l~~--~~~~lv~a~tGsGKT~~~ 70 (430)
+-+...+..++. +.-+++.||||||||...
T Consensus 153 ~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 153 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 345556666553 345789999999999653
No 254
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=81.83 E-value=24 Score=31.57 Aligned_cols=17 Identities=18% Similarity=0.129 Sum_probs=14.0
Q ss_pred CCEEEEcCCCChHHHHh
Q 014134 54 RDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~ 70 (430)
.-+.+.+|+|+|||...
T Consensus 130 ~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999654
No 255
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=81.78 E-value=4.3 Score=32.44 Aligned_cols=78 Identities=15% Similarity=0.177 Sum_probs=53.4
Q ss_pred EEEcCCCChHHHHhHHhhhc--CCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEE
Q 014134 57 FCLMPTGGGKSMCYQIPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLL 134 (430)
Q Consensus 57 lv~a~tGsGKT~~~~~~~l~--~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 134 (430)
.+..+....|-. .+..++. ...++||.|+++..+..+.+.+...+.......+......+........... .+++
T Consensus 12 ~~~~~~~~~K~~-~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~--~~vL 88 (175)
T 2rb4_A 12 YVLCEHRKDKYQ-ALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK--EKVL 88 (175)
T ss_dssp EEECSSHHHHHH-HHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS--CSEE
T ss_pred EEEcCChHhHHH-HHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC--CeEE
Confidence 333343333543 3334443 3578999999999999999999999988888888887777777666666544 4454
Q ss_pred EEC
Q 014134 135 YVT 137 (430)
Q Consensus 135 ~~~ 137 (430)
++|
T Consensus 89 vaT 91 (175)
T 2rb4_A 89 ITT 91 (175)
T ss_dssp EEC
T ss_pred EEe
Confidence 433
No 256
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=81.39 E-value=1 Score=40.12 Aligned_cols=17 Identities=24% Similarity=0.085 Sum_probs=14.0
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
-+++.||||+|||..+.
T Consensus 5 ~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCcCCHHHHHH
Confidence 46789999999997653
No 257
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=81.24 E-value=0.63 Score=42.64 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=15.5
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
+.+++.||+|+|||..+-
T Consensus 71 ~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 479999999999997654
No 258
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=81.20 E-value=0.83 Score=36.54 Aligned_cols=19 Identities=37% Similarity=0.534 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
+..+.+.||+|||||...-
T Consensus 4 ~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4678999999999997654
No 259
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=81.17 E-value=0.86 Score=36.97 Aligned_cols=33 Identities=15% Similarity=-0.028 Sum_probs=24.3
Q ss_pred EEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHH
Q 014134 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~ 89 (430)
++|.|++|||||.-+.-.+.. +.+++|++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 589999999999766544444 667888887543
No 260
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=81.08 E-value=1 Score=41.32 Aligned_cols=20 Identities=25% Similarity=0.162 Sum_probs=17.2
Q ss_pred HcCCCEEEEcCCCChHHHHh
Q 014134 51 LSGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 51 ~~~~~~lv~a~tGsGKT~~~ 70 (430)
..|+.+++.||||+|||...
T Consensus 173 ~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHH
T ss_pred hcCCEEEEECCCCCCHHHHH
Confidence 46789999999999999654
No 261
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=80.91 E-value=0.76 Score=38.31 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCChHHHHhH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~ 71 (430)
.|+-+++.||+|+|||...-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 35568899999999997653
No 262
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=80.88 E-value=0.88 Score=36.75 Aligned_cols=20 Identities=15% Similarity=-0.004 Sum_probs=16.8
Q ss_pred cCCCEEEEcCCCChHHHHhH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~ 71 (430)
.+..+++.|++|+|||...-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 45689999999999997654
No 263
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=80.81 E-value=0.78 Score=37.33 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=16.6
Q ss_pred cCCCEEEEcCCCChHHHHhH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~ 71 (430)
.+..+++.|++|||||.+.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35679999999999998764
No 264
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=80.71 E-value=1 Score=40.02 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=13.9
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
-++++||||+|||..+.
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 36789999999997653
No 265
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=80.69 E-value=29 Score=30.43 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=20.6
Q ss_pred CCCEEEEcCCCChHHHHhH-Hhhh--cCCCeEEEEc
Q 014134 53 GRDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS 85 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~-~~~l--~~~~~~lil~ 85 (430)
++-+.+.++.|+|||.... ++.+ ..+.+++++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 3446678999999996543 3222 3456666653
No 266
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=80.54 E-value=0.79 Score=37.83 Aligned_cols=18 Identities=28% Similarity=0.224 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCChHHHHh
Q 014134 53 GRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~ 70 (430)
++-+++.+|||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 456899999999998654
No 267
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=80.27 E-value=0.79 Score=39.83 Aligned_cols=20 Identities=30% Similarity=0.215 Sum_probs=16.3
Q ss_pred HcCCCEEEEcCCCChHHHHh
Q 014134 51 LSGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 51 ~~~~~~lv~a~tGsGKT~~~ 70 (430)
..|+-+++.||||||||...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 35667899999999999654
No 268
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=80.20 E-value=0.93 Score=37.05 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=14.4
Q ss_pred CCEEEEcCCCChHHHHh
Q 014134 54 RDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~ 70 (430)
+-++++||+|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45899999999999754
No 269
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=80.11 E-value=1.7 Score=36.45 Aligned_cols=72 Identities=14% Similarity=0.050 Sum_probs=44.7
Q ss_pred CCceEEEEeCccccHHHHHHHHHcC----CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccc------cccccccC
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKD 326 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~------~~Gidi~~ 326 (430)
.+.++||.++++.-+.++++.+++. +..+..++|+.+..+.... +. +.+|+|+|.-. ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 4568999999999999888877653 6678888998765543322 22 37899999532 23455667
Q ss_pred ceEEEEe
Q 014134 327 VRLVCHF 333 (430)
Q Consensus 327 ~~~vi~~ 333 (430)
++++|.-
T Consensus 156 ~~~iViD 162 (224)
T 1qde_A 156 IKMFILD 162 (224)
T ss_dssp CCEEEEE
T ss_pred CcEEEEc
Confidence 7777753
No 270
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=79.93 E-value=0.78 Score=39.64 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=13.1
Q ss_pred EEEEcCCCChHHHHh
Q 014134 56 CFCLMPTGGGKSMCY 70 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~ 70 (430)
+++.||+|||||..+
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 679999999999755
No 271
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=79.86 E-value=8.3 Score=33.16 Aligned_cols=72 Identities=15% Similarity=0.097 Sum_probs=51.2
Q ss_pred CCceEEEEeCccccHHHHHHHHHcC----CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEec-----ccc--cccccc
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFG--MGIDRK 325 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~--~Gidi~ 325 (430)
.+.++||.++++.-+.+.++.+++. +..+..++|+.+....... +..+ .+|+|+|. .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 3567999999999999998888763 5567788888876654433 2334 78999994 121 246777
Q ss_pred CceEEEE
Q 014134 326 DVRLVCH 332 (430)
Q Consensus 326 ~~~~vi~ 332 (430)
+++++|.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7887775
No 272
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=79.71 E-value=6 Score=32.02 Aligned_cols=65 Identities=17% Similarity=0.139 Sum_probs=40.4
Q ss_pred CChHHHHhHHhhh---cCCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCC
Q 014134 63 GGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (430)
Q Consensus 63 GsGKT~~~~~~~l---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (430)
...|... +..++ ..+.++||.++++.-+..+.+.+...|.......+......+...........
T Consensus 29 ~~~K~~~-L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~ 96 (185)
T 2jgn_A 29 ESDKRSF-LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 96 (185)
T ss_dssp GGGHHHH-HHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTS
T ss_pred cHHHHHH-HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCC
Confidence 4567543 33333 24678999999999999999999998888887777666555555555554443
No 273
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=79.57 E-value=0.79 Score=43.53 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.7
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
+++++.||+|+|||..+.
T Consensus 64 ~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 589999999999997654
No 274
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=79.56 E-value=5 Score=31.65 Aligned_cols=53 Identities=13% Similarity=0.141 Sum_probs=42.9
Q ss_pred CCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCC
Q 014134 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129 (430)
Q Consensus 77 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (430)
...++||.++++.-+..+.+.+...+.......+......+............
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 45789999999999999999999988888888888777777666666655443
No 275
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=79.56 E-value=30 Score=33.04 Aligned_cols=32 Identities=16% Similarity=0.069 Sum_probs=21.4
Q ss_pred CEEEEcCCCChHHHHhHHhh--h-cCCCeEEEEcc
Q 014134 55 DCFCLMPTGGGKSMCYQIPA--L-AKPGIVLVVSP 86 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~~~--l-~~~~~~lil~P 86 (430)
.+++.+++|+|||..+.-.+ + .++.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 47788999999996653221 2 34667777764
No 276
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=79.51 E-value=9 Score=32.58 Aligned_cols=73 Identities=8% Similarity=0.020 Sum_probs=50.7
Q ss_pred CceEEEEeCccccHHHHHHHHHcC----CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc-c----c-ccccccCc
Q 014134 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-F----G-MGIDRKDV 327 (430)
Q Consensus 258 ~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~-~----~-~Gidi~~~ 327 (430)
+.++||.+++++-+.++++.+++. +..+..++|+.+.......+ ....+|+|+|.- + . ..+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 458999999999999988877653 56677888887655443222 346789999963 2 1 23567778
Q ss_pred eEEEEec
Q 014134 328 RLVCHFN 334 (430)
Q Consensus 328 ~~vi~~~ 334 (430)
+++|.-.
T Consensus 176 ~~lViDE 182 (253)
T 1wrb_A 176 KYIVLDE 182 (253)
T ss_dssp CEEEEET
T ss_pred CEEEEeC
Confidence 8777533
No 277
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=79.41 E-value=0.71 Score=37.67 Aligned_cols=20 Identities=25% Similarity=0.214 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCChHHHHhH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~ 71 (430)
.|.-+++.||+|||||..+-
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45678899999999997653
No 278
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=79.29 E-value=6.1 Score=31.49 Aligned_cols=71 Identities=13% Similarity=0.065 Sum_probs=50.5
Q ss_pred ChHHHHhHHhhhc--CCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEEC
Q 014134 64 GGKSMCYQIPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (430)
Q Consensus 64 sGKT~~~~~~~l~--~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 137 (430)
..|... +..++. ...++||.|+++.-+..+.+.+...+.......+......+........... .+++++|
T Consensus 16 ~~K~~~-L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~--~~vLvaT 88 (172)
T 1t5i_A 16 NEKNRK-LFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ--RRILVAT 88 (172)
T ss_dssp GGHHHH-HHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEES
T ss_pred HHHHHH-HHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC--CcEEEEC
Confidence 456533 333332 4568999999999999999999999988888888877777766666666544 4454433
No 279
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=79.20 E-value=0.88 Score=36.28 Aligned_cols=17 Identities=18% Similarity=-0.214 Sum_probs=14.2
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
.+++.|++|||||..+-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997654
No 280
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=79.13 E-value=0.86 Score=37.69 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=16.4
Q ss_pred cCCCEEEEcCCCChHHHHhH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~ 71 (430)
.|.-+.+.||+|||||...-
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46678899999999997653
No 281
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=79.06 E-value=1.2 Score=40.19 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=17.0
Q ss_pred HcCCCEEEEcCCCChHHHHh
Q 014134 51 LSGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 51 ~~~~~~lv~a~tGsGKT~~~ 70 (430)
..|+.+++.||||||||...
T Consensus 169 ~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 36889999999999999643
No 282
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=79.00 E-value=0.9 Score=36.52 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=14.1
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
-+++.|++|||||..+-
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 47899999999997653
No 283
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=78.81 E-value=0.95 Score=36.82 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
+.-+++.|++|||||...-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999997653
No 284
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=78.62 E-value=0.9 Score=37.51 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.|.-+.+.||+|+|||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667889999999999754
No 285
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=78.62 E-value=0.69 Score=37.58 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCChHHHHhH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~ 71 (430)
.|..+++.|++|||||..+-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34568899999999997654
No 286
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=78.37 E-value=12 Score=35.39 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=20.6
Q ss_pred HHHHHH---HcCCCEEEEcCCCChHHHHhH
Q 014134 45 DAIQAV---LSGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 45 ~~~~~l---~~~~~~lv~a~tGsGKT~~~~ 71 (430)
+++..+ .+|+..++.+|.|+|||....
T Consensus 140 r~ID~L~pi~kGq~~~i~G~sGvGKTtL~~ 169 (473)
T 1sky_E 140 KVVDLLAPYIKGGKIGLFGGAGVGKTVLIQ 169 (473)
T ss_dssp HHHHHHSCEETTCEEEEECCSSSCHHHHHH
T ss_pred hHHHHHhhhccCCEEEEECCCCCCccHHHH
Confidence 355554 368889999999999996543
No 287
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=78.06 E-value=0.53 Score=41.00 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
.+.+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3579999999999997653
No 288
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=77.87 E-value=6.2 Score=37.01 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
.+++++.+|+|+|||..+-
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3689999999999997654
No 289
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=77.86 E-value=1.4 Score=36.91 Aligned_cols=72 Identities=10% Similarity=0.134 Sum_probs=47.5
Q ss_pred CCceEEEEeCccccHHHHHHHHHcC--------CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc-----ccc-cc
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAG--------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGM-GI 322 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~--------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~~~-Gi 322 (430)
.+.++||.++++.-+.++++.+++. +..+..++|+.+..+.. +.+ .+..+|+|+|.- +.. .+
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCC
Confidence 3568999999999999888877653 56777888887543321 111 245679999952 222 34
Q ss_pred cccCceEEEE
Q 014134 323 DRKDVRLVCH 332 (430)
Q Consensus 323 di~~~~~vi~ 332 (430)
++..++++|.
T Consensus 147 ~~~~~~~lVi 156 (219)
T 1q0u_A 147 DVHTAHILVV 156 (219)
T ss_dssp CGGGCCEEEE
T ss_pred CcCcceEEEE
Confidence 5666777664
No 290
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=77.84 E-value=1.1 Score=36.92 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.|+-+++.||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5677899999999999654
No 291
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=77.46 E-value=1.3 Score=37.26 Aligned_cols=20 Identities=20% Similarity=0.056 Sum_probs=16.3
Q ss_pred HcCCCEEEEcCCCChHHHHh
Q 014134 51 LSGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 51 ~~~~~~lv~a~tGsGKT~~~ 70 (430)
..|+-+.+.||+|+|||...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35778999999999999654
No 292
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=77.33 E-value=1.2 Score=36.16 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=14.0
Q ss_pred CCEEEEcCCCChHHHHh
Q 014134 54 RDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~ 70 (430)
+-+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 44789999999999754
No 293
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=76.95 E-value=2 Score=36.20 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=19.2
Q ss_pred CEEEEcCCCChHHHHhHHh---hhcCCCeEE
Q 014134 55 DCFCLMPTGGGKSMCYQIP---ALAKPGIVL 82 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~~---~l~~~~~~l 82 (430)
++++.++.|+|||..++-. +..++.+++
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~ 38 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVM 38 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEE
Confidence 6899999999999775422 234555553
No 294
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=76.79 E-value=6.7 Score=32.53 Aligned_cols=60 Identities=22% Similarity=0.299 Sum_probs=47.0
Q ss_pred cCCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEEC
Q 014134 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (430)
Q Consensus 76 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 137 (430)
....++||.|+++.-++.+.+.+...+.....+++......+........... .++++.|
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~--~~vlvaT 88 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGE--VRVLVAT 88 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSS--CCEEEEC
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCC--CeEEEec
Confidence 34679999999999999999999998988888888887777777777666554 4443333
No 295
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=76.74 E-value=1.6 Score=39.16 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=14.4
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
.++++||||+|||..+.
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999997653
No 296
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=76.43 E-value=1.3 Score=36.62 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCChHHHHhH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~ 71 (430)
.+.-+++.||+|||||..+-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35678899999999997653
No 297
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=76.37 E-value=2.5 Score=39.12 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=27.3
Q ss_pred cCCCEEEEcCCCChHHHHhHHh---hhcCCCeEEEEcchHH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIA 89 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~~~---~l~~~~~~lil~Pt~~ 89 (430)
.+.++++.||||+|||...-.. ....+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 4678999999999999654322 2345677888877654
No 298
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=76.28 E-value=1.6 Score=37.67 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=17.6
Q ss_pred cCCCEEEEcCCCChHHHHhH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~ 71 (430)
.+..+++.|++|+|||..+-
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 48899999999999997754
No 299
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=75.92 E-value=1.1 Score=35.95 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
+..+++.|++|||||..+-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568899999999997653
No 300
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=75.86 E-value=1.3 Score=36.17 Aligned_cols=21 Identities=19% Similarity=0.185 Sum_probs=17.1
Q ss_pred HcCCCEEEEcCCCChHHHHhH
Q 014134 51 LSGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 51 ~~~~~~lv~a~tGsGKT~~~~ 71 (430)
..+..+++.|++|||||..+-
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 345678999999999997654
No 301
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=75.79 E-value=0.81 Score=41.53 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
..++++.||+|+|||..+-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4679999999999997653
No 302
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=75.72 E-value=1.3 Score=40.54 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.+..+++.||||||||...
T Consensus 122 ~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3457889999999999654
No 303
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=75.68 E-value=1.1 Score=35.90 Aligned_cols=21 Identities=19% Similarity=0.101 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCChHHHHhHH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~~ 72 (430)
.|.-+.+.||+|||||..+-.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 355678999999999976543
No 304
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=75.28 E-value=22 Score=31.82 Aligned_cols=77 Identities=17% Similarity=0.048 Sum_probs=54.5
Q ss_pred CCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhc
Q 014134 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (430)
Q Consensus 77 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~ 156 (430)
.+.++||+++++.-+..+.+.+...+......++......+............. + +|+|.. +..-.+.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~--v------lv~T~~----~~~Gid~ 304 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR--I------LIATDV----MSRGIDV 304 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS--E------EEECTT----HHHHCCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCe--E------EEECCh----hhcCCCc
Confidence 466899999999999999999999988888888887777777776666655433 3 666632 1222334
Q ss_pred CCccEEEEe
Q 014134 157 GLLNLVAID 165 (430)
Q Consensus 157 ~~~~~lViD 165 (430)
..+++||.-
T Consensus 305 ~~~~~Vi~~ 313 (367)
T 1hv8_A 305 NDLNCVINY 313 (367)
T ss_dssp SCCSEEEES
T ss_pred ccCCEEEEe
Confidence 446666653
No 305
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=75.21 E-value=1.4 Score=37.06 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=16.5
Q ss_pred HHcCCCEEEEcCCCChHHHHh
Q 014134 50 VLSGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 50 l~~~~~~lv~a~tGsGKT~~~ 70 (430)
+-.|+-+++.||.|+|||...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 456778899999999999654
No 306
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=75.01 E-value=1.4 Score=39.80 Aligned_cols=17 Identities=24% Similarity=0.143 Sum_probs=14.2
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
-+++.||||||||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 47899999999997653
No 307
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=74.94 E-value=54 Score=30.53 Aligned_cols=31 Identities=29% Similarity=0.211 Sum_probs=20.6
Q ss_pred CEEEEcCCCChHHHHhH-Hh-h-hcC-CCeEEEEc
Q 014134 55 DCFCLMPTGGGKSMCYQ-IP-A-LAK-PGIVLVVS 85 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~-~~-~-l~~-~~~~lil~ 85 (430)
.+++.+++|+|||.+.. ++ . ..+ +.+++++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd 136 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 136 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 46778999999996654 22 1 234 66777664
No 308
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=74.70 E-value=1.4 Score=40.62 Aligned_cols=19 Identities=32% Similarity=0.265 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.|+.+++.||||||||...
T Consensus 135 ~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSEEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567899999999999654
No 309
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=74.44 E-value=1.4 Score=36.31 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=15.2
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
.-+++.|++|||||..+-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999997653
No 310
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=74.31 E-value=1.6 Score=34.99 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=14.7
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
.+++.+++|||||..+-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 68999999999997654
No 311
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=74.30 E-value=16 Score=33.48 Aligned_cols=76 Identities=17% Similarity=0.101 Sum_probs=54.4
Q ss_pred CCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhc
Q 014134 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (430)
Q Consensus 77 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~ 156 (430)
.+.++||.++++.-++.+.+.+...+......++......+.............+ +|+|.- +..-.+.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v--------lvaT~~----~~~Gidi 342 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI--------LVATAV----AARGLDI 342 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCE--------EEECHH----HHTTSCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCE--------EEECCh----hhcCCCc
Confidence 4678999999999999999999999888888888887777777766666555443 777731 2222333
Q ss_pred CCccEEEE
Q 014134 157 GLLNLVAI 164 (430)
Q Consensus 157 ~~~~~lVi 164 (430)
..+++||.
T Consensus 343 p~v~~Vi~ 350 (417)
T 2i4i_A 343 SNVKHVIN 350 (417)
T ss_dssp CCEEEEEE
T ss_pred ccCCEEEE
Confidence 44555553
No 312
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=74.23 E-value=1.8 Score=41.14 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
..++++.||+|+|||..+-
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3689999999999997653
No 313
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=74.08 E-value=1.3 Score=39.08 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=14.7
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
.-++++||+|||||..+-
T Consensus 34 ~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEEECCTTSCTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 348899999999997653
No 314
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=73.89 E-value=1.2 Score=36.75 Aligned_cols=20 Identities=15% Similarity=-0.039 Sum_probs=16.4
Q ss_pred cCCCEEEEcCCCChHHHHhH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~ 71 (430)
.+..+++.|+.|||||...-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 45678999999999997654
No 315
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=73.88 E-value=1.5 Score=34.83 Aligned_cols=19 Identities=26% Similarity=0.139 Sum_probs=16.0
Q ss_pred CCEEEEcCCCChHHHHhHH
Q 014134 54 RDCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~~ 72 (430)
+++++.++.|||||.++-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4789999999999987643
No 316
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=73.79 E-value=1.5 Score=35.76 Aligned_cols=19 Identities=16% Similarity=-0.045 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
+.-+++.|++|||||..+-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457899999999997653
No 317
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=73.75 E-value=7.6 Score=36.47 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=52.8
Q ss_pred CCceEEEEeCccccHHHHHHHHHcC-CC---cceeecCCCCHHHHHHHHHHhhcCCceEEEEecc-ccc-----cccccC
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAG-GI---SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGM-----GIDRKD 326 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~-~~---~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~-~~~-----Gidi~~ 326 (430)
.+.++||.|+++.-+.+.++.+.+. +. .+..+||+....++..... ..+|+|+|.- +.. .++...
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 5678999999999999999888775 54 7889999998887655443 3579999853 221 355667
Q ss_pred ceEEEE
Q 014134 327 VRLVCH 332 (430)
Q Consensus 327 ~~~vi~ 332 (430)
.++||.
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 787775
No 318
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=73.71 E-value=2.5 Score=38.46 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=17.9
Q ss_pred HHHHHcCCC--EEEEcCCCChHHHHhH
Q 014134 47 IQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 47 ~~~l~~~~~--~lv~a~tGsGKT~~~~ 71 (430)
+..+++|-| ++.-|.||||||.+..
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 344456755 6677899999997754
No 319
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=73.51 E-value=1.9 Score=38.92 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=15.5
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
..+++.||+|+|||..+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 679999999999997653
No 320
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=73.26 E-value=1.7 Score=36.02 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=16.6
Q ss_pred HHHcCCCEEEEcCCCChHHHHh
Q 014134 49 AVLSGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 49 ~l~~~~~~lv~a~tGsGKT~~~ 70 (430)
.+..|+-+.+.||+|+|||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4567788899999999999654
No 321
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=73.21 E-value=2.8 Score=37.59 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=18.1
Q ss_pred HHHHHcCCC--EEEEcCCCChHHHHhH
Q 014134 47 IQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 47 ~~~l~~~~~--~lv~a~tGsGKT~~~~ 71 (430)
+..+++|.| ++.-|+||||||.+..
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEec
Confidence 334457765 6678899999998754
No 322
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=73.19 E-value=12 Score=26.78 Aligned_cols=52 Identities=13% Similarity=0.239 Sum_probs=40.3
Q ss_pred EEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEE
Q 014134 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (430)
Q Consensus 261 ~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vL 312 (430)
.+||.+..+...++...++..|..+..++++...+.|..-++.|.....++-
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvr 56 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVR 56 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCcee
Confidence 3556666666778888888889999999999998888888888876555443
No 323
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=72.97 E-value=1.6 Score=35.41 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=14.4
Q ss_pred CEEEEcCCCChHHHHhHH
Q 014134 55 DCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~ 72 (430)
-+++.||+|+|||..+-.
T Consensus 4 ii~l~G~~GaGKSTl~~~ 21 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 467899999999976543
No 324
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=72.89 E-value=1.5 Score=36.18 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.+.-+.+.||+|||||..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556889999999999765
No 325
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=72.85 E-value=1.5 Score=40.45 Aligned_cols=16 Identities=31% Similarity=0.102 Sum_probs=13.4
Q ss_pred EEEEcCCCChHHHHhH
Q 014134 56 CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~ 71 (430)
+++.||||+|||..+.
T Consensus 5 i~i~GptgsGKttla~ 20 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEECSSSSHHHHHH
T ss_pred EEEECcchhhHHHHHH
Confidence 6789999999996653
No 326
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=72.75 E-value=1.4 Score=35.81 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
+.-+++.|++|||||..+-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3457899999999997764
No 327
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=72.60 E-value=2 Score=34.68 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=15.1
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
..+++.|++|||||..+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 358899999999997764
No 328
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=72.46 E-value=1.7 Score=36.23 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=14.7
Q ss_pred CEEEEcCCCChHHHHhHH
Q 014134 55 DCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~ 72 (430)
.+++.||+|||||..+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999977643
No 329
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=72.44 E-value=1.8 Score=35.45 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=16.5
Q ss_pred cCCCEEEEcCCCChHHHHhH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~ 71 (430)
.+.-+++.|++|||||..+-
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45678999999999997653
No 330
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=72.34 E-value=4 Score=43.17 Aligned_cols=74 Identities=8% Similarity=0.123 Sum_probs=56.3
Q ss_pred CCceEEEEeCccccHHHHHHHHHcC----CC----cceeecCCCCHHHHHHHHHHhhcCCceEEEEecc-cccccc-ccC
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAG----GI----SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGID-RKD 326 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~----~~----~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~-~~~Gid-i~~ 326 (430)
.+.++||.++++.-+.++++.+++. +. .+..+||+.+..++....+.+.+ .+|+|+|.- +..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 4568999999999999988888653 55 78899999999888878887777 899999963 222222 556
Q ss_pred ceEEEE
Q 014134 327 VRLVCH 332 (430)
Q Consensus 327 ~~~vi~ 332 (430)
++++|.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 331
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=72.25 E-value=9.3 Score=42.28 Aligned_cols=34 Identities=15% Similarity=0.071 Sum_probs=23.3
Q ss_pred CCCEEEEcCCCChHHHHhHHhh---hcCCCeEEEEcc
Q 014134 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSP 86 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~~~---l~~~~~~lil~P 86 (430)
|..+++.||+|+|||..++-.+ ...+.+++|+.-
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~ 768 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 768 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEec
Confidence 3578899999999996654322 234557777653
No 332
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=72.20 E-value=1.4 Score=36.48 Aligned_cols=20 Identities=25% Similarity=0.013 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCChHHHHhH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~ 71 (430)
.+.-+++.|++|||||..+-
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 34568899999999997653
No 333
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=72.05 E-value=2.7 Score=30.20 Aligned_cols=37 Identities=19% Similarity=0.413 Sum_probs=32.4
Q ss_pred CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCC
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~ 293 (430)
+..++++||.+-..+...+..|.+.|+++..+.|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 4668999999988899999999999998888998853
No 334
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=71.90 E-value=2.8 Score=37.92 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=16.9
Q ss_pred HHHHcCCC--EEEEcCCCChHHHHh
Q 014134 48 QAVLSGRD--CFCLMPTGGGKSMCY 70 (430)
Q Consensus 48 ~~l~~~~~--~lv~a~tGsGKT~~~ 70 (430)
..+++|-| ++.-|+||||||.+.
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 33456755 667889999999875
No 335
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=71.71 E-value=5.5 Score=42.79 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=35.2
Q ss_pred CCEEEEcCCCChHHHHhH---Hhhh-cC-----------CCeEEEEcchHHHHHHHHHHHHH
Q 014134 54 RDCFCLMPTGGGKSMCYQ---IPAL-AK-----------PGIVLVVSPLIALMENQVIGLKE 100 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~---~~~l-~~-----------~~~~lil~Pt~~L~~q~~~~~~~ 100 (430)
...+|.|..|||||.+.. +.++ .. ..++|+|+=|+.-+.++.+++.+
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 355999999999997654 2222 21 23799999999999988887766
No 336
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=71.65 E-value=2.1 Score=36.64 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
+..+++.||+|||||..+-
T Consensus 29 ~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999997654
No 337
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=71.62 E-value=2.6 Score=30.71 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=33.1
Q ss_pred CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCH
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 294 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~ 294 (430)
+..++++||.+-..+...+..|++.|+++..+.||+..
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 45689999999888999999999999999999998643
No 338
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=71.55 E-value=2.8 Score=37.50 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=18.7
Q ss_pred HHHHHHcC-----CCEEEEcCCCChHHHHhH
Q 014134 46 AIQAVLSG-----RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 46 ~~~~l~~~-----~~~lv~a~tGsGKT~~~~ 71 (430)
.+..++.| .-+++.||+|+|||..++
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHH
Confidence 45555532 457899999999996654
No 339
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=71.54 E-value=1.8 Score=36.04 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=14.8
Q ss_pred CEEEEcCCCChHHHHhHH
Q 014134 55 DCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~ 72 (430)
.+++.||+|||||..+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987643
No 340
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=71.51 E-value=1.7 Score=35.23 Aligned_cols=17 Identities=24% Similarity=0.050 Sum_probs=14.0
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
.+++.|++|||||..+-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999997653
No 341
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.41 E-value=3.8 Score=36.97 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.5
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
++++.||+|+|||..+.
T Consensus 48 ~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp CEEEECSSSSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48999999999997654
No 342
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=71.34 E-value=2.1 Score=34.06 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=15.0
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
..+++.|++|||||..+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358899999999997654
No 343
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=71.02 E-value=3.3 Score=37.50 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=17.0
Q ss_pred HHHcCCC--EEEEcCCCChHHHHhH
Q 014134 49 AVLSGRD--CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 49 ~l~~~~~--~lv~a~tGsGKT~~~~ 71 (430)
.+++|-| ++.-|+||||||.+..
T Consensus 84 ~~l~G~n~tifAYGqTGSGKTyTm~ 108 (350)
T 2vvg_A 84 AVLEGFNSTIFAYGQTGAGKTWTMG 108 (350)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHhCCCceeEEeecCCCCCCCEEee
Confidence 3456755 6678899999997653
No 344
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=71.01 E-value=3.2 Score=37.97 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=17.4
Q ss_pred HHHHcCCC--EEEEcCCCChHHHHhH
Q 014134 48 QAVLSGRD--CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 48 ~~l~~~~~--~lv~a~tGsGKT~~~~ 71 (430)
..+++|-| ++.-|+||||||.+..
T Consensus 95 ~~~l~G~n~tifAYGqTGSGKTyTM~ 120 (372)
T 3b6u_A 95 DSVLQGFNGTIFAYGQTGTGKTYTME 120 (372)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHhCCCeeeEEeecCCCCCCCEeEe
Confidence 34557765 5677899999997753
No 345
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=71.00 E-value=1.7 Score=42.69 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=14.6
Q ss_pred CEEEEcCCCChHHHHh
Q 014134 55 DCFCLMPTGGGKSMCY 70 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~ 70 (430)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999765
No 346
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=70.96 E-value=3.3 Score=37.76 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=17.0
Q ss_pred HHHcCCC--EEEEcCCCChHHHHhH
Q 014134 49 AVLSGRD--CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 49 ~l~~~~~--~lv~a~tGsGKT~~~~ 71 (430)
.+++|-| ++.-|+||||||.+..
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTm~ 103 (365)
T 2y65_A 79 DVLAGYNGTIFAYGQTSSGKTHTME 103 (365)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHhCCCceEEEeecCCCCCCceEEe
Confidence 3456755 6678899999998753
No 347
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=70.95 E-value=2.8 Score=29.99 Aligned_cols=37 Identities=14% Similarity=0.406 Sum_probs=32.4
Q ss_pred CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCC
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~ 293 (430)
+..++++||.+-..+...+..|++.|+++..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4578999999988899999999999998888888863
No 348
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=70.94 E-value=1.9 Score=36.34 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
...+++.|++|||||..+-
T Consensus 7 ~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999997664
No 349
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=70.85 E-value=23 Score=30.06 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=14.9
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
..+++.|++|||||..+-
T Consensus 33 ~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp EEEEEESCGGGTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358899999999997654
No 350
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=70.78 E-value=2.1 Score=35.84 Aligned_cols=19 Identities=21% Similarity=0.252 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
+..+++.|++|||||..+-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999997654
No 351
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=70.75 E-value=2.2 Score=35.78 Aligned_cols=19 Identities=11% Similarity=0.025 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
...+++.|++|||||..+-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3578999999999997654
No 352
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=70.69 E-value=3.4 Score=37.39 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=16.9
Q ss_pred HHHHcCCC--EEEEcCCCChHHHHh
Q 014134 48 QAVLSGRD--CFCLMPTGGGKSMCY 70 (430)
Q Consensus 48 ~~l~~~~~--~lv~a~tGsGKT~~~ 70 (430)
..+++|.| ++.-|+||||||.+.
T Consensus 77 ~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 77 EAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCeeEEEecccCCCceEee
Confidence 33456765 667789999999774
No 353
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=70.68 E-value=3.4 Score=37.09 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=19.2
Q ss_pred HHHHHHcCCC--EEEEcCCCChHHHHhH
Q 014134 46 AIQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 46 ~~~~l~~~~~--~lv~a~tGsGKT~~~~ 71 (430)
.+..+++|.| ++.-|+||||||.+..
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEEe
Confidence 4555677865 6678899999997653
No 354
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=70.60 E-value=3.1 Score=30.06 Aligned_cols=36 Identities=19% Similarity=0.413 Sum_probs=31.6
Q ss_pred CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCC
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~ 292 (430)
+.+++++||.+-..+...+..|.+.|+.+..+.||+
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 466899999998889999999999999988888875
No 355
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=70.52 E-value=3.2 Score=37.72 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=17.0
Q ss_pred HHHcCCC--EEEEcCCCChHHHHhH
Q 014134 49 AVLSGRD--CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 49 ~l~~~~~--~lv~a~tGsGKT~~~~ 71 (430)
.+++|.| ++.-|+||||||.+..
T Consensus 75 ~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 75 DILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp HHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHhCCCcceEEEECCCCCCcceEee
Confidence 3456754 6678899999997754
No 356
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=70.34 E-value=5.1 Score=46.50 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHhcCCccchHHHHH----HHHHHHcCCCEEEEcCCCChHHHHhH
Q 014134 22 EKEALVKLLRWHFGHAQFRDKQLD----AIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 22 ~~~~~~~~l~~~~g~~~~~~~Q~~----~~~~l~~~~~~lv~a~tGsGKT~~~~ 71 (430)
+.+.+.....+ .|+. +.+.+.. ....+..+..+++.||||+|||.++-
T Consensus 890 l~~~i~~~~~~-~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQR-SGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHH-HTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHH-cCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 34455555655 5765 5555533 23334456789999999999998764
No 357
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=70.28 E-value=2 Score=34.90 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.4
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
-+++.|++|||||..+-
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998654
No 358
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=70.27 E-value=69 Score=29.72 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=19.9
Q ss_pred CEEEEcCCCChHHHHhH-Hhh-h-cCCCeEEEEc
Q 014134 55 DCFCLMPTGGGKSMCYQ-IPA-L-AKPGIVLVVS 85 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~-~~~-l-~~~~~~lil~ 85 (430)
-+.+.++.|+|||.... ++. + ..+.+++++.
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 46678999999996543 222 2 3456666654
No 359
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=70.25 E-value=3.4 Score=37.46 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=17.9
Q ss_pred HHHHHcCCC--EEEEcCCCChHHHHhH
Q 014134 47 IQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 47 ~~~l~~~~~--~lv~a~tGsGKT~~~~ 71 (430)
+..+++|.| ++.-|+||||||.+..
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHcCCccceeeecCCCCCCCeEEe
Confidence 344557755 6678899999997653
No 360
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=70.08 E-value=2.2 Score=35.02 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.1
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
..+++.|++|||||..+-
T Consensus 21 ~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458899999999997654
No 361
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=69.97 E-value=2.9 Score=37.01 Aligned_cols=70 Identities=11% Similarity=-0.022 Sum_probs=47.6
Q ss_pred CCceEEEEeCccccHHHHHHHHHcC-----CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecccc-------ccccc
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG-------MGIDR 324 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~-------~Gidi 324 (430)
.+.++||.+++++-+.++++.++.. +..+...+|+.+...+ .....+|+|+|.--- ..+++
T Consensus 161 ~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l 233 (300)
T 3fmo_B 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDP 233 (300)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCG
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCCh
Confidence 3447999999999999988877653 4556667776543211 134567999996321 24677
Q ss_pred cCceEEEEe
Q 014134 325 KDVRLVCHF 333 (430)
Q Consensus 325 ~~~~~vi~~ 333 (430)
..+.++|.-
T Consensus 234 ~~l~~lVlD 242 (300)
T 3fmo_B 234 KKIKVFVLD 242 (300)
T ss_dssp GGCSEEEET
T ss_pred hhceEEEEe
Confidence 888888753
No 362
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=69.92 E-value=3.5 Score=37.53 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=17.8
Q ss_pred HHHHHcCCC--EEEEcCCCChHHHHhH
Q 014134 47 IQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 47 ~~~l~~~~~--~lv~a~tGsGKT~~~~ 71 (430)
+..+++|.| ++.-|+||||||.+..
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHhCCCceEEEEECCCCCCCceEec
Confidence 344457765 5667899999997753
No 363
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=69.84 E-value=3.6 Score=37.56 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=17.9
Q ss_pred HHHHHcCCC--EEEEcCCCChHHHHhH
Q 014134 47 IQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 47 ~~~l~~~~~--~lv~a~tGsGKT~~~~ 71 (430)
+..+++|-| ++.-|.||||||.+..
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEee
Confidence 344567765 6678899999997653
No 364
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=69.75 E-value=13 Score=33.74 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=56.3
Q ss_pred CCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcC
Q 014134 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRG 157 (430)
Q Consensus 78 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~ 157 (430)
..++||.++++.-++.+++.++..+......++......+............ ++ +|+|.- +..-.+..
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~--~v------lv~T~~----~~~Gidip 310 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRS--KV------LITTNV----LARGIDIP 310 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSC--CE------EEECGG----GSSSCCCT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCC--CE------EEECCh----hhcCCCcc
Confidence 5789999999999999999999998888888888877777777777765543 44 555531 11112233
Q ss_pred CccEEEEecCcc
Q 014134 158 LLNLVAIDEAHC 169 (430)
Q Consensus 158 ~~~~lViDE~h~ 169 (430)
.+++||.-+...
T Consensus 311 ~~~~Vi~~~~p~ 322 (395)
T 3pey_A 311 TVSMVVNYDLPT 322 (395)
T ss_dssp TEEEEEESSCCB
T ss_pred cCCEEEEcCCCC
Confidence 466777655544
No 365
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=69.59 E-value=3.4 Score=37.54 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=17.3
Q ss_pred HHHHcCCC--EEEEcCCCChHHHHhH
Q 014134 48 QAVLSGRD--CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 48 ~~l~~~~~--~lv~a~tGsGKT~~~~ 71 (430)
..+++|.| ++.-|+||||||.+..
T Consensus 99 ~~~l~G~n~tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 99 RSFLNGYNCTVLAYGATGAGKTHTML 124 (355)
T ss_dssp HHHTTTCCEEEEEECCTTSSHHHHHT
T ss_pred HHHhCCCceEEEEeCCCCCCceeeec
Confidence 34456755 6677899999997753
No 366
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=69.47 E-value=3.6 Score=37.41 Aligned_cols=25 Identities=32% Similarity=0.495 Sum_probs=18.0
Q ss_pred HHHHHcCCC--EEEEcCCCChHHHHhH
Q 014134 47 IQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 47 ~~~l~~~~~--~lv~a~tGsGKT~~~~ 71 (430)
+..+++|.| ++.-|+||||||.+..
T Consensus 85 v~~~l~G~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 85 LQNAFDGYNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp HHHHHTTCCEEEEEEECTTSSHHHHHT
T ss_pred HHHHhCCceeEEEeeCCCCCCCceEEe
Confidence 344557765 5677899999997753
No 367
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=69.13 E-value=1.6 Score=36.89 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=11.4
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.|.-+.+.||+|+|||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3566889999999999654
No 368
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=69.10 E-value=3.6 Score=38.07 Aligned_cols=25 Identities=32% Similarity=0.679 Sum_probs=18.0
Q ss_pred HHHHHcCCC--EEEEcCCCChHHHHhH
Q 014134 47 IQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 47 ~~~l~~~~~--~lv~a~tGsGKT~~~~ 71 (430)
+..+++|-| ++.-|.||||||.+..
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEee
Confidence 334567754 6677899999998754
No 369
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=69.09 E-value=34 Score=33.96 Aligned_cols=83 Identities=28% Similarity=0.223 Sum_probs=58.1
Q ss_pred cCCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhh
Q 014134 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS 155 (430)
Q Consensus 76 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~ 155 (430)
..+.++||.|+|+.-++...+.+...|......++......+........... .++ +|+|.- +..-..
T Consensus 443 ~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~--~~V------LVaT~~----l~~GlD 510 (661)
T 2d7d_A 443 ERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGK--YDV------LVGINL----LREGLD 510 (661)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTS--CSE------EEESCC----CSTTCC
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCC--eEE------EEecch----hhCCcc
Confidence 45779999999999999999999999988888777776666666666555443 445 444421 011122
Q ss_pred cCCccEEEEecCccc
Q 014134 156 RGLLNLVAIDEAHCI 170 (430)
Q Consensus 156 ~~~~~~lViDE~h~~ 170 (430)
...+++||+-|++..
T Consensus 511 ip~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 511 IPEVSLVAILDADKE 525 (661)
T ss_dssp CTTEEEEEETTTTCC
T ss_pred cCCCCEEEEeCcccc
Confidence 344778999888874
No 370
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=69.05 E-value=2 Score=34.51 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.|..+++.++.|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456789999999999765
No 371
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=68.97 E-value=4.2 Score=37.71 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=19.2
Q ss_pred HHHHHHcCCC--EEEEcCCCChHHHHhH
Q 014134 46 AIQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 46 ~~~~l~~~~~--~lv~a~tGsGKT~~~~ 71 (430)
.+..+++|-| ++.-|+||||||.+..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 4555667865 5677899999998754
No 372
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=68.81 E-value=2.3 Score=34.98 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=14.0
Q ss_pred CEEEEcCCCChHHHHh
Q 014134 55 DCFCLMPTGGGKSMCY 70 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~ 70 (430)
-+++.|++|||||..+
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999766
No 373
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=68.73 E-value=2.3 Score=35.71 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=14.9
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
..+.+.||+|||||..+-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999997654
No 374
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=68.71 E-value=1.9 Score=35.82 Aligned_cols=18 Identities=22% Similarity=0.049 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCChHHHHh
Q 014134 53 GRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~ 70 (430)
|.-+.+.||+|||||..+
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446779999999999654
No 375
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=68.58 E-value=2.3 Score=35.09 Aligned_cols=16 Identities=19% Similarity=0.032 Sum_probs=13.6
Q ss_pred EEEEcCCCChHHHHhH
Q 014134 56 CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~ 71 (430)
+.+.||.|||||.+.-
T Consensus 5 i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999997664
No 376
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=68.58 E-value=2.5 Score=35.15 Aligned_cols=31 Identities=13% Similarity=0.000 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHHHHhH
Q 014134 40 RDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 40 ~~~Q~~~~~~l~~~~~~lv~a~tGsGKT~~~~ 71 (430)
++.+... ..+..+.-+++.|++|+|||..+-
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHHH
Confidence 3344444 223456678899999999997653
No 377
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=68.55 E-value=3.7 Score=40.47 Aligned_cols=23 Identities=35% Similarity=0.322 Sum_probs=19.0
Q ss_pred HHHcCCCEEEEcCCCChHHHHhH
Q 014134 49 AVLSGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 49 ~l~~~~~~lv~a~tGsGKT~~~~ 71 (430)
.+..+..+++.+|+|+|||..+-
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHHH
Confidence 34567899999999999997653
No 378
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=68.42 E-value=3.5 Score=37.56 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=17.9
Q ss_pred HHHHHcCCC--EEEEcCCCChHHHHhH
Q 014134 47 IQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 47 ~~~l~~~~~--~lv~a~tGsGKT~~~~ 71 (430)
+..+++|-| ++.-|.||||||.+..
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 334456765 6677899999997654
No 379
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=68.41 E-value=5.9 Score=38.25 Aligned_cols=72 Identities=8% Similarity=0.036 Sum_probs=47.7
Q ss_pred CceEEEEeCccccHHHHHHHHHcC----CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecccc-----cc-c-cccC
Q 014134 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG-----MG-I-DRKD 326 (430)
Q Consensus 258 ~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~~-----~G-i-di~~ 326 (430)
+.++||.++++.-+.+.++.+++. ++.+..+||+.+...+...+. ...+|+|+|.-.- .| + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999888888877764 888999999987655432221 2367999985322 22 3 5667
Q ss_pred ceEEEEe
Q 014134 327 VRLVCHF 333 (430)
Q Consensus 327 ~~~vi~~ 333 (430)
+++||.-
T Consensus 131 ~~~vViD 137 (556)
T 4a2p_A 131 FTLMIFD 137 (556)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 7877753
No 380
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=68.31 E-value=2.4 Score=35.07 Aligned_cols=20 Identities=20% Similarity=0.044 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCChHHHHhH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~ 71 (430)
.+.-+++.|+.|||||...-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 35568999999999997653
No 381
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=68.27 E-value=3.2 Score=42.24 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=16.3
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
..++++.||+|+|||..+-
T Consensus 201 ~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3689999999999997654
No 382
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=68.21 E-value=2.4 Score=33.52 Aligned_cols=17 Identities=18% Similarity=0.063 Sum_probs=14.2
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
.+++.+++|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999997654
No 383
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=68.13 E-value=2.2 Score=35.31 Aligned_cols=20 Identities=20% Similarity=-0.009 Sum_probs=16.5
Q ss_pred cCCCEEEEcCCCChHHHHhH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~ 71 (430)
++.-+++.|+.|||||...-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45678999999999997653
No 384
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=68.10 E-value=3.1 Score=36.83 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=14.3
Q ss_pred CEEEEcCCCChHHHHh
Q 014134 55 DCFCLMPTGGGKSMCY 70 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~ 70 (430)
++++.||+|+|||..+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 6999999999999765
No 385
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=68.07 E-value=3.7 Score=37.58 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=17.0
Q ss_pred HHHcCCC--EEEEcCCCChHHHHhH
Q 014134 49 AVLSGRD--CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 49 ~l~~~~~--~lv~a~tGsGKT~~~~ 71 (430)
.+++|-| ++.-|.||||||.+..
T Consensus 95 ~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 95 EVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp HHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred HHhCCceEEEEeecCCCCCcceecc
Confidence 3456755 6678899999997754
No 386
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=67.90 E-value=2.2 Score=34.54 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
+..+++.|++|||||..+-
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568899999999997653
No 387
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=67.88 E-value=2 Score=34.58 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=12.3
Q ss_pred CCCEEEEcCCCChHHHHhHH
Q 014134 53 GRDCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~~ 72 (430)
+.-+++.|++|||||..+-.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688999999999987643
No 388
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=67.88 E-value=3.8 Score=37.65 Aligned_cols=25 Identities=32% Similarity=0.679 Sum_probs=18.0
Q ss_pred HHHHHcCCC--EEEEcCCCChHHHHhH
Q 014134 47 IQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 47 ~~~l~~~~~--~lv~a~tGsGKT~~~~ 71 (430)
+..+++|.| ++.-|.||||||.+..
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEec
Confidence 334567754 6677899999997753
No 389
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=67.65 E-value=2.4 Score=36.63 Aligned_cols=18 Identities=22% Similarity=-0.012 Sum_probs=14.9
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
.-++++|++|||||..+-
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 458899999999997654
No 390
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=67.42 E-value=3.3 Score=37.80 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=18.9
Q ss_pred HHHHHHcCCC--EEEEcCCCChHHHHhH
Q 014134 46 AIQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 46 ~~~~l~~~~~--~lv~a~tGsGKT~~~~ 71 (430)
.+..+++|.| ++.-|+||||||.+..
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTIY 98 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEeec
Confidence 4455667865 5667899999997753
No 391
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=67.41 E-value=3.1 Score=33.59 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=13.3
Q ss_pred CEEEEcCCCChHHHHh
Q 014134 55 DCFCLMPTGGGKSMCY 70 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~ 70 (430)
.+.+.||.|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999654
No 392
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=67.38 E-value=3.8 Score=38.03 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=19.3
Q ss_pred HHHHHHcCCC--EEEEcCCCChHHHHhH
Q 014134 46 AIQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 46 ~~~~l~~~~~--~lv~a~tGsGKT~~~~ 71 (430)
.+..+++|-| ++.-|+||||||.+..
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 157 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTMD 157 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEec
Confidence 4556677865 5677899999997753
No 393
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=67.21 E-value=2.7 Score=32.78 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=13.2
Q ss_pred CEEEEcCCCChHHHHh
Q 014134 55 DCFCLMPTGGGKSMCY 70 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~ 70 (430)
-.++.+|+|+|||...
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3678999999999653
No 394
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=67.19 E-value=2.5 Score=34.60 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=13.9
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
.+++.|++|||||...-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 36899999999997653
No 395
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=67.17 E-value=4.9 Score=38.78 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=49.4
Q ss_pred CceEEEEeCccccHHHHHHHHHcC----CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc-cc----cc-c-cccC
Q 014134 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FG----MG-I-DRKD 326 (430)
Q Consensus 258 ~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~-~~----~G-i-di~~ 326 (430)
+.++||.++++.-+.+.++.+++. +..+..++|+.+...+...+. +..+|+|+|.- +. .+ + ++..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999999888888777664 888999999986554432221 23679999853 22 22 2 5566
Q ss_pred ceEEEE
Q 014134 327 VRLVCH 332 (430)
Q Consensus 327 ~~~vi~ 332 (430)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 396
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=67.14 E-value=2.6 Score=34.99 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=13.9
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
.+++.||+||||+..+-
T Consensus 2 ~Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36889999999997654
No 397
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=67.12 E-value=2.5 Score=34.82 Aligned_cols=17 Identities=29% Similarity=0.044 Sum_probs=14.2
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
.+.+.|++|||||..+-
T Consensus 3 ~i~i~G~~GsGKSTl~~ 19 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQ 19 (204)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 47899999999997654
No 398
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=67.09 E-value=2.7 Score=35.50 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
+..+++.|++|||||..+-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578999999999997654
No 399
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=67.01 E-value=8.3 Score=39.42 Aligned_cols=71 Identities=8% Similarity=0.079 Sum_probs=47.3
Q ss_pred CceEEEEeCccccHHHHHHHHHcC----CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc-c----ccc-c-cccC
Q 014134 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-F----GMG-I-DRKD 326 (430)
Q Consensus 258 ~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~-~----~~G-i-di~~ 326 (430)
+.++||.++++.-+.+.++.+++. ++.+..+||+.+...+...+. +..+|+|+|.- + ..+ + ++..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999998888877664 889999999987665433221 35789999853 2 222 3 4566
Q ss_pred ceEEEE
Q 014134 327 VRLVCH 332 (430)
Q Consensus 327 ~~~vi~ 332 (430)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 400
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=66.97 E-value=2.2 Score=35.30 Aligned_cols=18 Identities=17% Similarity=-0.201 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCChHHHHh
Q 014134 53 GRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~ 70 (430)
+.-+.+.||+|||||...
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 345779999999999765
No 401
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=66.79 E-value=2.7 Score=35.13 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
+..+++.|++|||||..+-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3468899999999997654
No 402
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=66.74 E-value=2.6 Score=34.14 Aligned_cols=16 Identities=19% Similarity=0.034 Sum_probs=13.5
Q ss_pred EEEEcCCCChHHHHhH
Q 014134 56 CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~ 71 (430)
+++.|+.|||||...-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999997653
No 403
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=66.56 E-value=2.1 Score=36.51 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=47.7
Q ss_pred CCceEEEEeCccccHHHHHHHHHcC----CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc-----ccc---cccc
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGM---GIDR 324 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~~~---Gidi 324 (430)
.+.++||.++++.-+.++++.+++. +..+..++|+.....+ ......+..+|+|+|.- +.. ++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 3457999999999999999888764 5566666654322111 11223456789999942 112 4677
Q ss_pred cCceEEEEe
Q 014134 325 KDVRLVCHF 333 (430)
Q Consensus 325 ~~~~~vi~~ 333 (430)
.+++++|.-
T Consensus 174 ~~~~~lViD 182 (245)
T 3dkp_A 174 ASVEWLVVD 182 (245)
T ss_dssp TTCCEEEES
T ss_pred ccCcEEEEe
Confidence 778877753
No 404
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=66.18 E-value=2.6 Score=35.03 Aligned_cols=17 Identities=24% Similarity=0.079 Sum_probs=14.3
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
.+++.|++|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997654
No 405
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=65.96 E-value=2.8 Score=34.08 Aligned_cols=16 Identities=31% Similarity=0.106 Sum_probs=13.5
Q ss_pred EEEEcCCCChHHHHhH
Q 014134 56 CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~ 71 (430)
+++.|+.|||||...-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999997653
No 406
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=65.87 E-value=2.7 Score=34.70 Aligned_cols=19 Identities=16% Similarity=-0.192 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
+.-+.+.|++|||||..+-
T Consensus 21 ~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4457899999999997653
No 407
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=65.83 E-value=2.7 Score=48.76 Aligned_cols=20 Identities=35% Similarity=0.423 Sum_probs=17.4
Q ss_pred HcCCCEEEEcCCCChHHHHh
Q 014134 51 LSGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 51 ~~~~~~lv~a~tGsGKT~~~ 70 (430)
..+++++++||||||||..+
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHH
T ss_pred HCCCeEEEECCCCCCHHHHH
Confidence 35789999999999999765
No 408
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=65.57 E-value=3.5 Score=39.51 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.+.++++.|+||||||.+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp GSCSEEEECCTTSSHHHHH
T ss_pred cCceEEEECCCCCCHHHHH
Confidence 3578999999999999764
No 409
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=65.37 E-value=4.9 Score=37.70 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=17.0
Q ss_pred HHHcCCC--EEEEcCCCChHHHHhH
Q 014134 49 AVLSGRD--CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 49 ~l~~~~~--~lv~a~tGsGKT~~~~ 71 (430)
.+++|-| ++.-|.||||||.+..
T Consensus 131 ~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 131 HNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp HHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HhhcCCceEEEEeCCCCCCCCEEee
Confidence 3456755 6678899999997753
No 410
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=65.29 E-value=4.2 Score=33.21 Aligned_cols=42 Identities=12% Similarity=-0.028 Sum_probs=24.5
Q ss_pred CCccEEEEecCccccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCC
Q 014134 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (430)
Q Consensus 157 ~~~~~lViDE~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~ 203 (430)
...+++|+||+..+...... ....+.++.... ..+++-|.|.
T Consensus 104 ~~~dvlilDE~g~~~~~~~~---~~~~l~~~l~~~--~~~ilgti~v 145 (189)
T 2i3b_A 104 PGQRVCVIDEIGKMELFSQL---FIQAVRQTLSTP--GTIILGTIPV 145 (189)
T ss_dssp SCCCCEEECCCSTTTTTCSH---HHHHHHHHHHCS--SCCEEEECCC
T ss_pred cCCCEEEEeCCCccccccHH---HHHHHHHHHhCC--CcEEEEEeec
Confidence 44679999998776432222 235555555532 2355556675
No 411
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=65.09 E-value=3.6 Score=37.77 Aligned_cols=33 Identities=30% Similarity=0.468 Sum_probs=22.6
Q ss_pred chHHHHHHHHH--------HHcCCC--EEEEcCCCChHHHHhH
Q 014134 39 FRDKQLDAIQA--------VLSGRD--CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 39 ~~~~Q~~~~~~--------l~~~~~--~lv~a~tGsGKT~~~~ 71 (430)
+..-|.+.+.. +++|.| ++.-|+||||||.+..
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHT
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEee
Confidence 34457776654 446655 6678899999997653
No 412
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=65.06 E-value=3.3 Score=37.44 Aligned_cols=18 Identities=22% Similarity=0.264 Sum_probs=15.0
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
.++++.||+|+|||..+-
T Consensus 37 ~~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 359999999999997653
No 413
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=65.02 E-value=3.8 Score=37.15 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=18.2
Q ss_pred HHHHHHcCCC--EEEEcCCCChHHHHhH
Q 014134 46 AIQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 46 ~~~~l~~~~~--~lv~a~tGsGKT~~~~ 71 (430)
.+..+++|-| ++.-|+||||||.+..
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 3344456755 5677899999998754
No 414
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=64.72 E-value=3 Score=34.93 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=14.3
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
+-+++.||+||||+..+-
T Consensus 30 kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp EEEEEECCTTCCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 457789999999987653
No 415
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=64.52 E-value=67 Score=27.43 Aligned_cols=39 Identities=10% Similarity=0.186 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCc-eEEEEeCccccHHHHHHHHHcCCCc
Q 014134 246 YADLCSVLKANGDT-CAIVYCLERTTCDELSAYLSAGGIS 284 (430)
Q Consensus 246 ~~~l~~~l~~~~~~-~~iVf~~s~~~~~~l~~~l~~~~~~ 284 (430)
...+.+++...+.. ...|||.+...+..+.+.+++.|+.
T Consensus 187 ~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 226 (298)
T 3tb6_A 187 LEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLK 226 (298)
T ss_dssp HHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcCCC
Confidence 56677777765432 6788998888888999999887764
No 416
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=64.49 E-value=3 Score=34.97 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=14.1
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
.+++.|++|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36899999999997654
No 417
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=64.32 E-value=3 Score=33.49 Aligned_cols=16 Identities=25% Similarity=0.052 Sum_probs=13.4
Q ss_pred CEEEEcCCCChHHHHh
Q 014134 55 DCFCLMPTGGGKSMCY 70 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~ 70 (430)
-.++.+|+|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4679999999999654
No 418
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=64.18 E-value=4 Score=28.69 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=30.6
Q ss_pred ceEEEEeCccccHHHHHHHHHcCCCcceeecCCCC
Q 014134 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (430)
Q Consensus 259 ~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~ 293 (430)
.++++||.+-..+...+..|.+.|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988888999999999988778888864
No 419
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=64.08 E-value=3.8 Score=37.09 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=16.4
Q ss_pred HHcCCC--EEEEcCCCChHHHHhH
Q 014134 50 VLSGRD--CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 50 l~~~~~--~lv~a~tGsGKT~~~~ 71 (430)
+++|-| ++.-|+||||||.+..
T Consensus 80 ~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 80 SLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp GGGTCCEEEEEECCTTSSHHHHHH
T ss_pred hcCCceeEEEEECCCCCCCcEecc
Confidence 346655 6678899999997754
No 420
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=64.02 E-value=3.2 Score=34.74 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCChHHHHhH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~ 71 (430)
.|.-+.+.+|+|+|||....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34568899999999996654
No 421
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=63.94 E-value=3.3 Score=35.54 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
+..+.+.||+|||||..+-
T Consensus 27 g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999997653
No 422
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=63.85 E-value=3.4 Score=35.22 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
+..+++.||.|||||...-
T Consensus 27 ~~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4678999999999997553
No 423
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=63.77 E-value=15 Score=32.49 Aligned_cols=59 Identities=20% Similarity=0.293 Sum_probs=46.2
Q ss_pred CCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEEC
Q 014134 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (430)
Q Consensus 77 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 137 (430)
...++||.|+++.-++.+.+.+...+.....+++......+........... .++++.|
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~--~~vLVaT 85 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGE--VRVLVAT 85 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTS--CCEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCC--ceEEEEe
Confidence 4788999999999999999999998988888888877777776666666554 4454443
No 424
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=63.66 E-value=18 Score=36.84 Aligned_cols=56 Identities=9% Similarity=0.038 Sum_probs=43.7
Q ss_pred cCCceEEEEeCccccHHHHHHHHHc----CCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc
Q 014134 256 NGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (430)
Q Consensus 256 ~~~~~~iVf~~s~~~~~~l~~~l~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~ 317 (430)
..+.+++|.++|+.-|.+.++.+.. .|+.+..+.|+++...|.... ..+|+|+|..
T Consensus 113 l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpg 172 (853)
T 2fsf_A 113 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNN 172 (853)
T ss_dssp TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHH
T ss_pred HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCc
Confidence 3466899999999988887776654 589999999999987665433 3789999963
No 425
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=63.64 E-value=4 Score=36.23 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=21.1
Q ss_pred cCCCEEEEcCCCChHHHHhH-HhhhcCCCeEEEEc
Q 014134 52 SGRDCFCLMPTGGGKSMCYQ-IPALAKPGIVLVVS 85 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~-~~~l~~~~~~lil~ 85 (430)
.|+-+.+.||+|+|||...- +.-+. .+.++..+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v 158 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFA 158 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGG
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEe
Confidence 46778899999999995543 22222 45554433
No 426
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=63.39 E-value=3.6 Score=34.96 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.|+-+.+.||.|||||...
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTML 48 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4667889999999999654
No 427
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=63.19 E-value=3.2 Score=33.96 Aligned_cols=18 Identities=22% Similarity=0.027 Sum_probs=14.8
Q ss_pred CEEEEcCCCChHHHHhHH
Q 014134 55 DCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~ 72 (430)
.+.+.+++|||||..+-.
T Consensus 10 ~I~i~G~~GsGKST~~~~ 27 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAAL 27 (203)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987643
No 428
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=62.84 E-value=3.6 Score=33.71 Aligned_cols=39 Identities=15% Similarity=-0.074 Sum_probs=23.9
Q ss_pred CEEEEcCCCChHHHHhHHhhhcCCCeEEEEcchHHHHHHHHH
Q 014134 55 DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVI 96 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~~~l~~~~~~lil~Pt~~L~~q~~~ 96 (430)
.+.+.|++|||||.++-...-.-+ +.+..+-.++.+.+.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg---~~vid~D~~~~~~~~ 52 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYG---AHVVNVDRIGHEVLE 52 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC---CEEEECcHHHHHHHH
Confidence 367899999999987643322112 334456666665544
No 429
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=62.72 E-value=21 Score=36.30 Aligned_cols=71 Identities=4% Similarity=0.048 Sum_probs=52.1
Q ss_pred cCCceEEEEeCccccHHHHHHHHHc----CCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc-c-----c------
Q 014134 256 NGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-F-----G------ 319 (430)
Q Consensus 256 ~~~~~~iVf~~s~~~~~~l~~~l~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~-~-----~------ 319 (430)
..+..++|.++|+.-|.+.++.+.. .|+.+.++.|+++..+|.... ..+|+++|.- + .
T Consensus 122 L~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~ 195 (844)
T 1tf5_A 122 LTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLY 195 (844)
T ss_dssp TTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSS
T ss_pred HcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcc
Confidence 3466899999999999888776654 589999999999987765442 2689999962 1 1
Q ss_pred -ccccccCceEEEE
Q 014134 320 -MGIDRKDVRLVCH 332 (430)
Q Consensus 320 -~Gidi~~~~~vi~ 332 (430)
..++...+.++|.
T Consensus 196 ~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 196 KEQMVQRPLHFAVI 209 (844)
T ss_dssp GGGCCCCCCCEEEE
T ss_pred hhhhcccCCCEEEE
Confidence 1355667777764
No 430
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=62.61 E-value=3.3 Score=37.86 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.4
Q ss_pred CEEEEcCCCChHHHHh
Q 014134 55 DCFCLMPTGGGKSMCY 70 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~ 70 (430)
-.++.||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4679999999999654
No 431
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=62.54 E-value=5.5 Score=36.22 Aligned_cols=20 Identities=35% Similarity=0.600 Sum_probs=15.8
Q ss_pred cCCC--EEEEcCCCChHHHHhH
Q 014134 52 SGRD--CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 52 ~~~~--~lv~a~tGsGKT~~~~ 71 (430)
.|.+ ++.-|+||||||.+..
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEEe
Confidence 3665 6888999999997754
No 432
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=62.54 E-value=13 Score=33.93 Aligned_cols=72 Identities=15% Similarity=0.085 Sum_probs=51.1
Q ss_pred CCceEEEEeCccccHHHHHHHHHc----CCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEeccc-----c-ccccccC
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----G-MGIDRKD 326 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~~-----~-~Gidi~~ 326 (430)
.+.++||.++++.-+.++++.+.+ .+..+..++|+.+..+....+. ..+|+|+|.-. . ..++...
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 456899999999999988887765 3677889999988766554443 46799998421 1 2344566
Q ss_pred ceEEEEe
Q 014134 327 VRLVCHF 333 (430)
Q Consensus 327 ~~~vi~~ 333 (430)
+++||.-
T Consensus 163 ~~~vIiD 169 (394)
T 1fuu_A 163 IKMFILD 169 (394)
T ss_dssp CCEEEEE
T ss_pred CcEEEEE
Confidence 7777753
No 433
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=61.94 E-value=6.8 Score=29.42 Aligned_cols=37 Identities=16% Similarity=0.335 Sum_probs=31.8
Q ss_pred ceEEEEe-CccccHHHHHHHHHcCCCcceeecCCCCHH
Q 014134 259 TCAIVYC-LERTTCDELSAYLSAGGISCAAYHAGLNDK 295 (430)
Q Consensus 259 ~~~iVf~-~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~ 295 (430)
.++++|| .+-..+...+..|+..|+++..+.|++..-
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~W 127 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKAY 127 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHHH
Confidence 7899999 577778899999999999999999997654
No 434
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=61.46 E-value=3.1 Score=33.38 Aligned_cols=16 Identities=13% Similarity=-0.004 Sum_probs=13.1
Q ss_pred CEEEEcCCCChHHHHh
Q 014134 55 DCFCLMPTGGGKSMCY 70 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~ 70 (430)
-+.+.+++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999654
No 435
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=61.26 E-value=4.1 Score=32.69 Aligned_cols=20 Identities=15% Similarity=-0.082 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCChHHHHhH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~ 71 (430)
.|..+++.++.|+|||..++
T Consensus 15 ~G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHH
Confidence 35679999999999996554
No 436
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=61.18 E-value=15 Score=24.98 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=29.0
Q ss_pred CCceEEEEeCccccHHHHHHHHHcCCCc-ceeecCCCC
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~-~~~~hg~~~ 293 (430)
+..++++||.+-..+...+..|.+.|+. +..+ |++.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 5678999999988889999999999886 4455 7653
No 437
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=60.98 E-value=5.7 Score=40.35 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=14.7
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
++++.||||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999997653
No 438
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=60.91 E-value=5 Score=36.76 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=16.2
Q ss_pred HHcCCC--EEEEcCCCChHHHHhH
Q 014134 50 VLSGRD--CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 50 l~~~~~--~lv~a~tGsGKT~~~~ 71 (430)
+++|-| ++.-|.||||||.+..
T Consensus 111 ~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 111 ALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp GGGTCCEEEEEECSTTSSHHHHHT
T ss_pred hcCCCceEEEEeCCCCCCCceEee
Confidence 346654 6677899999997754
No 439
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=60.90 E-value=4.6 Score=35.53 Aligned_cols=34 Identities=24% Similarity=0.116 Sum_probs=22.2
Q ss_pred cCCCEEEEcCCCChHHHHhHHhh--h--cCCCeEEEEc
Q 014134 52 SGRDCFCLMPTGGGKSMCYQIPA--L--AKPGIVLVVS 85 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~~~~--l--~~~~~~lil~ 85 (430)
.|.-+++.||+|+|||......+ + ..+..++++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45678899999999996553222 1 2244677764
No 440
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=60.88 E-value=3.9 Score=34.04 Aligned_cols=18 Identities=22% Similarity=0.012 Sum_probs=14.7
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
.-+.+.|+.|||||...-
T Consensus 5 ~~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVAN 22 (218)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357899999999997654
No 441
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=60.75 E-value=3.8 Score=33.67 Aligned_cols=17 Identities=12% Similarity=-0.287 Sum_probs=13.9
Q ss_pred CCEEEEcCCCChHHHHh
Q 014134 54 RDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~ 70 (430)
.-+.+.|++|||||..+
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34778999999999765
No 442
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=60.71 E-value=54 Score=32.57 Aligned_cols=83 Identities=23% Similarity=0.186 Sum_probs=57.2
Q ss_pred cCCCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhh
Q 014134 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS 155 (430)
Q Consensus 76 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~ 155 (430)
.++.++||.|+|+.-++.+.+.+...|......++......+........... .++ +|+|.. +..-..
T Consensus 437 ~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~--~~V------LvaT~~----l~~GlD 504 (664)
T 1c4o_A 437 ARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGH--YDC------LVGINL----LREGLD 504 (664)
T ss_dssp HTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTS--CSE------EEESCC----CCTTCC
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCC--ceE------EEccCh----hhcCcc
Confidence 35789999999999999999999999988888777776666666666665443 445 444421 011122
Q ss_pred cCCccEEEEecCccc
Q 014134 156 RGLLNLVAIDEAHCI 170 (430)
Q Consensus 156 ~~~~~~lViDE~h~~ 170 (430)
...+++||+=+++..
T Consensus 505 ip~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 505 IPEVSLVAILDADKE 519 (664)
T ss_dssp CTTEEEEEETTTTSC
T ss_pred CCCCCEEEEeCCccc
Confidence 334678888887764
No 443
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=60.70 E-value=11 Score=44.51 Aligned_cols=48 Identities=13% Similarity=0.298 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHhcCCccchHHHHH-HH---HHHHcCCCEEEEcCCCChHHHHhH
Q 014134 22 EKEALVKLLRWHFGHAQFRDKQLD-AI---QAVLSGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 22 ~~~~~~~~l~~~~g~~~~~~~Q~~-~~---~~l~~~~~~lv~a~tGsGKT~~~~ 71 (430)
+.+.+.....+ .|+. +.+.+.. ++ +.+..+..+++.||||+|||.++-
T Consensus 873 l~~ai~~~~~~-~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQ-RHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHH-TTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHH-cCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 44555555655 5764 5555543 22 223345678999999999998874
No 444
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=60.68 E-value=5 Score=28.99 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=31.8
Q ss_pred CCceEEEEeCccccHHHHHHHHHcCCCc-ceeecCCCCH
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 294 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~-~~~~hg~~~~ 294 (430)
+..++++||.+-..+...+..|...|+. +..+.|++..
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 89 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHH
Confidence 4568999999988899999999999985 7888888643
No 445
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=60.14 E-value=9.4 Score=29.46 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=30.8
Q ss_pred CCceEEEEeCccccHHHHHHHHHcCCC-cceeecCCCC
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLN 293 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~~~-~~~~~hg~~~ 293 (430)
+..+++|||.+-..+...+..|.+.|+ ++..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 456899999998888899999999998 4888999874
No 446
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=59.93 E-value=4.9 Score=30.03 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=32.0
Q ss_pred CCceEEEEeCcccc--HHHHHHHHHcCCCcceeecCCCCH
Q 014134 257 GDTCAIVYCLERTT--CDELSAYLSAGGISCAAYHAGLND 294 (430)
Q Consensus 257 ~~~~~iVf~~s~~~--~~~l~~~l~~~~~~~~~~hg~~~~ 294 (430)
++.++++||.+-.. +...+..|++.|+.+..+.|++..
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~~ 109 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEG 109 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHHH
Confidence 46689999998776 889999999999998888998643
No 447
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=59.92 E-value=4 Score=35.96 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=14.3
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
-+++.|++|||||..+-
T Consensus 4 ~I~l~G~~GsGKST~a~ 20 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAR 20 (301)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999997654
No 448
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=59.89 E-value=4.5 Score=34.38 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.|+-+.+.||.|+|||...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999654
No 449
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=59.81 E-value=8.1 Score=45.55 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=18.9
Q ss_pred HHHHH-HcCCCEEEEcCCCChHHHHh
Q 014134 46 AIQAV-LSGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 46 ~~~~l-~~~~~~lv~a~tGsGKT~~~ 70 (430)
.+..+ ..+++++++||||+|||...
T Consensus 1296 ll~~ll~~~~pvLL~GptGtGKT~li 1321 (3245)
T 3vkg_A 1296 VLHAWLSEHRPLILCGPPGSGKTMTL 1321 (3245)
T ss_dssp HHHHHHHTTCCCEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCcEEEECCCCCCHHHHH
Confidence 34443 45689999999999999543
No 450
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=59.59 E-value=4.2 Score=35.83 Aligned_cols=16 Identities=38% Similarity=0.434 Sum_probs=13.2
Q ss_pred CEEEEcCCCChHHHHh
Q 014134 55 DCFCLMPTGGGKSMCY 70 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~ 70 (430)
-+.+.|++|||||..+
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3668999999999665
No 451
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=59.41 E-value=22 Score=32.54 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=44.2
Q ss_pred CCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCc
Q 014134 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS 130 (430)
Q Consensus 78 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (430)
..++||.|+++.-+..+++.+...+......++......+.............
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 318 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK 318 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCc
Confidence 57899999999999999999999988888888888777777777777655433
No 452
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=59.31 E-value=4.3 Score=34.77 Aligned_cols=17 Identities=24% Similarity=-0.079 Sum_probs=14.2
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
-+.+.|++|||||.++-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47799999999997654
No 453
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=59.29 E-value=3.9 Score=37.45 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=13.3
Q ss_pred CEEEEcCCCChHHHHh
Q 014134 55 DCFCLMPTGGGKSMCY 70 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~ 70 (430)
-.++.|+||+|||...
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4689999999999653
No 454
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=59.10 E-value=5.3 Score=33.32 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.|+-+.+.+|.|+|||...
T Consensus 34 ~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677889999999999654
No 455
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=58.81 E-value=5.4 Score=35.36 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=20.2
Q ss_pred CCCEEEEcCCCChHHHHhH-Hhhh--cCCCeEEEEc
Q 014134 53 GRDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS 85 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~-~~~l--~~~~~~lil~ 85 (430)
+.-+.+.+|+|+|||.... ++.+ ..+.++++..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3457789999999996543 2222 2345555543
No 456
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=58.80 E-value=7.1 Score=34.90 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=19.8
Q ss_pred CEEEEcCCCChHHHHhH-Hhh-h-cCCCeEEEE
Q 014134 55 DCFCLMPTGGGKSMCYQ-IPA-L-AKPGIVLVV 84 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~-~~~-l-~~~~~~lil 84 (430)
-+.+.+++|+|||.... ++. + ..+.+++++
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 36788999999996543 222 2 346666665
No 457
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=58.71 E-value=6.9 Score=35.47 Aligned_cols=18 Identities=17% Similarity=0.036 Sum_probs=14.6
Q ss_pred CCEEEEcCCCChHHHHhH
Q 014134 54 RDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~ 71 (430)
.-+.+.+|+|+|||....
T Consensus 132 ~i~~I~G~~GsGKTTL~~ 149 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAH 149 (349)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999996554
No 458
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=58.58 E-value=29 Score=35.52 Aligned_cols=56 Identities=11% Similarity=0.111 Sum_probs=44.1
Q ss_pred hcCCceEEEEeCccccHHHHHHHHHc----CCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEec
Q 014134 255 ANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (430)
Q Consensus 255 ~~~~~~~iVf~~s~~~~~~l~~~l~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (430)
...+..++|.++|+.-|.+.++.+.. .|+.+.++.|+++..+|.... ..+|+++|.
T Consensus 149 aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 149 ALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp HTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 33566899999999988877776654 589999999999987766543 268999996
No 459
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=58.40 E-value=87 Score=26.70 Aligned_cols=180 Identities=9% Similarity=0.025 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEECCccccChhHHHHHHHhhhcCCccEEEEecCc
Q 014134 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (430)
Q Consensus 89 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~T~~~~~~~~~~~~~~~~~~lViDE~h 168 (430)
.+...+.+.+.+.|....+................+.... ++-++..+... .. ..........+.+|++|...
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~-~~----~~~~~~~~~~iPvV~~~~~~ 97 (291)
T 3egc_A 25 EVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERR--VDGLILAPSEG-EH----DYLRTELPKTFPIVAVNREL 97 (291)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEECCCSS-CC----HHHHHSSCTTSCEEEESSCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCC--CCEEEEeCCCC-Ch----HHHHHhhccCCCEEEEeccc
Confidence 5555666667777777666554443333333333333333 22222221111 11 22233333456788887643
Q ss_pred c---ccccCCCcHHHHHHHHHHHhhCCCCcEEEEEcCCCchhHHH----HHHHhCCCCCeEEeccCCCCceEEEEEecCc
Q 014134 169 C---ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD----VMESLCLQNPLVLKSSFNRPNLFYEVRYKDL 241 (430)
Q Consensus 169 ~---~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SAT~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (430)
. +...+.+.........+.+......++.+++.......... +...+..... ......... ....
T Consensus 98 ~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~------~~~~~~~~~--~~~~ 169 (291)
T 3egc_A 98 RIPGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGL------PVRQEWIAA--GGVR 169 (291)
T ss_dssp CCTTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTC------CCCGGGEEC------
T ss_pred CCCCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCC------CCCHHHeEe--CCCC
Confidence 2 11111122222233333333345667888877754322111 1111111000 000000000 0111
Q ss_pred chhHHHHHHHHHHhcCCceEEEEeCccccHHHHHHHHHcCCCc
Q 014134 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (430)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~ 284 (430)
.......+.+++... .....|||.+...+..+.+.|++.|+.
T Consensus 170 ~~~~~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~g~~ 211 (291)
T 3egc_A 170 ADNGRDGAIKVLTGA-DRPTALLTSSHRITEGAMQALNVLGLR 211 (291)
T ss_dssp --CCHHHHHHHHTC--CCCSEEEESSHHHHHHHHHHHHHHTCC
T ss_pred hhHHHHHHHHHHhCC-CCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 122334555666543 456788899988888899999887654
No 460
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=57.93 E-value=7.1 Score=41.89 Aligned_cols=33 Identities=6% Similarity=-0.113 Sum_probs=25.9
Q ss_pred CceEEEEeCccc-cHHHHHHHHHcCCCcceeecC
Q 014134 258 DTCAIVYCLERT-TCDELSAYLSAGGISCAAYHA 290 (430)
Q Consensus 258 ~~~~iVf~~s~~-~~~~l~~~l~~~~~~~~~~hg 290 (430)
.+.+.|.+++.. .+..+...|.+.|+++....+
T Consensus 342 ~~diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~~ 375 (1166)
T 3u4q_B 342 YKDVAILARQPEDYKDMVKEVFADYEIPYFIDGK 375 (1166)
T ss_dssp GGGEEEEESCGGGTHHHHHHHHHHTTCCEEESSC
T ss_pred hhheEEEeCChHHHHHHHHHHHHHcCCCEEECCC
Confidence 345889999974 788999999999988766444
No 461
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=57.74 E-value=8.1 Score=33.32 Aligned_cols=58 Identities=9% Similarity=-0.095 Sum_probs=35.2
Q ss_pred HHHHHcC-----CCEEEEcCCCChHHHH---hHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCcce
Q 014134 47 IQAVLSG-----RDCFCLMPTGGGKSMC---YQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (430)
Q Consensus 47 ~~~l~~~-----~~~lv~a~tGsGKT~~---~~~~~l~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 105 (430)
+..++.| ..+++.+.+|+|||.. |+...+.++.++++++-. +-..+..+.+..+|.+.
T Consensus 10 LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~-e~~~~l~~~~~~~G~dl 75 (260)
T 3bs4_A 10 LDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSIS-YPLQLIIRILSRFGVDV 75 (260)
T ss_dssp HHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECS-SCHHHHHHHHHHTTCCH
T ss_pred HHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEe-CCHHHHHHHHHHcCCCH
Confidence 4455543 4577776777777633 234446778888887653 33345666777776553
No 462
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=57.63 E-value=4.4 Score=35.44 Aligned_cols=18 Identities=28% Similarity=-0.021 Sum_probs=14.8
Q ss_pred CEEEEcCCCChHHHHhHH
Q 014134 55 DCFCLMPTGGGKSMCYQI 72 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~~ 72 (430)
-+.+.|++|||||.++-.
T Consensus 77 iI~I~G~~GSGKSTva~~ 94 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQR 94 (281)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999977643
No 463
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=57.50 E-value=5.2 Score=33.76 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.|+-+.+.+|.|+|||...
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999654
No 464
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=57.46 E-value=4.6 Score=31.81 Aligned_cols=19 Identities=16% Similarity=0.085 Sum_probs=15.0
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.|.-+.+.+|.|+|||...
T Consensus 32 ~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SCEEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4556789999999999543
No 465
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=57.35 E-value=5.2 Score=34.21 Aligned_cols=19 Identities=26% Similarity=0.191 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.|+-+.+.||.|+|||...
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLT 52 (247)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999754
No 466
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=57.35 E-value=4.4 Score=41.82 Aligned_cols=17 Identities=35% Similarity=0.430 Sum_probs=14.7
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
++++.||||+|||..+-
T Consensus 590 ~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAK 606 (854)
T ss_dssp EEEEBSCSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999997653
No 467
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=57.27 E-value=27 Score=35.95 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=45.1
Q ss_pred HhcCCceEEEEeCccccHHHHHHHHHc----CCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc
Q 014134 254 KANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (430)
Q Consensus 254 ~~~~~~~~iVf~~s~~~~~~l~~~l~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~ 317 (430)
....+.+++|.++|+.-|.+.++.+.. .|+.+..+.|+++..+|.... ..+|+++|..
T Consensus 116 ~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 116 NALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp HHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred HHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 334566899999999988877766654 589999999999987776554 3789999963
No 468
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=57.07 E-value=4.2 Score=41.32 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=14.8
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
++++.||||+|||..+-
T Consensus 490 ~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 69999999999997653
No 469
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=57.06 E-value=7.5 Score=29.64 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=32.5
Q ss_pred CCceEEEEeCccccHHHHHHHHHcCCC-cceeecCCCCH
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLND 294 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~~~-~~~~~hg~~~~ 294 (430)
+..+++|||.+-..+...+..|++.|+ ++..+.|++..
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~ 119 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDK 119 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHH
Confidence 467899999998889999999999998 48889999643
No 470
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=56.98 E-value=6.6 Score=30.27 Aligned_cols=38 Identities=16% Similarity=0.303 Sum_probs=32.3
Q ss_pred CCceEEEEeCcc--ccHHHHHHHHHcCCCcceeecCCCCH
Q 014134 257 GDTCAIVYCLER--TTCDELSAYLSAGGISCAAYHAGLND 294 (430)
Q Consensus 257 ~~~~~iVf~~s~--~~~~~l~~~l~~~~~~~~~~hg~~~~ 294 (430)
+..++++||.+- ..+...+..|+..|+++..+.|++..
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~~ 110 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEY 110 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHHH
Confidence 456899999987 57889999999999998899998643
No 471
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=56.92 E-value=25 Score=32.08 Aligned_cols=58 Identities=14% Similarity=0.237 Sum_probs=44.9
Q ss_pred CCeEEEEcchHHHHHHHHHHHHHcCcceeEeCCCchHHHHHHHHhhhhcCCCceeEEEEC
Q 014134 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (430)
Q Consensus 78 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 137 (430)
..++||+++++.-++.+++.+...+.......+......+........... .+++++|
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vLv~T 315 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK--VRTLVCS 315 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTS--SSEEEES
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCC--CcEEEEc
Confidence 568999999999999999999998888888888777777776666665544 4454433
No 472
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=56.90 E-value=5.2 Score=34.89 Aligned_cols=19 Identities=32% Similarity=0.312 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.|.-+.+.||.|+|||...
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLF 51 (275)
T ss_dssp TTSEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566889999999999654
No 473
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=56.86 E-value=5.1 Score=33.94 Aligned_cols=19 Identities=26% Similarity=0.167 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
...+.+.+|+|||||..+-
T Consensus 9 ~~~i~i~G~~GsGKsTla~ 27 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSR 27 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3468899999999997664
No 474
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=56.82 E-value=5.1 Score=32.81 Aligned_cols=17 Identities=24% Similarity=0.106 Sum_probs=14.1
Q ss_pred CEEEEcCCCChHHHHhH
Q 014134 55 DCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~~ 71 (430)
-+.+.+++|||||..+-
T Consensus 4 ~i~i~G~~GsGKst~~~ 20 (208)
T 3ake_A 4 IVTIDGPSASGKSSVAR 20 (208)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999997664
No 475
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=56.75 E-value=5.4 Score=35.42 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.|+-+.+.+|+|+|||...
T Consensus 79 ~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp TTCEEEEESSSCHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHH
Confidence 3567889999999999654
No 476
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=56.71 E-value=5.1 Score=34.13 Aligned_cols=19 Identities=21% Similarity=-0.108 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCChHHHHhH
Q 014134 53 GRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~~ 71 (430)
+.-+.+.||.|||||..+-
T Consensus 25 g~iigI~G~~GsGKSTl~k 43 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCE 43 (245)
T ss_dssp SEEEEEECSTTSSHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 3446799999999997653
No 477
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=56.70 E-value=6.5 Score=31.36 Aligned_cols=16 Identities=13% Similarity=-0.064 Sum_probs=12.9
Q ss_pred CEEEEcCCCChHHHHh
Q 014134 55 DCFCLMPTGGGKSMCY 70 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~ 70 (430)
-+.+.+++|||||...
T Consensus 6 ~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999643
No 478
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=56.66 E-value=5.3 Score=35.40 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=20.2
Q ss_pred CCEEEEcCCCChHHHHhH-Hhhh--cCCCeEEEEc
Q 014134 54 RDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS 85 (430)
Q Consensus 54 ~~~lv~a~tGsGKT~~~~-~~~l--~~~~~~lil~ 85 (430)
.-+.+.||+|+|||...- ++-+ ..+.++.+..
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 346799999999996543 2222 2355666654
No 479
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=56.59 E-value=5.5 Score=34.41 Aligned_cols=19 Identities=42% Similarity=0.546 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.|+-+.+.+|.|+|||...
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIA 63 (260)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999654
No 480
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=56.23 E-value=9.5 Score=40.57 Aligned_cols=65 Identities=14% Similarity=0.037 Sum_probs=50.1
Q ss_pred CCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEec-----cccccc-cccCceEE
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMGI-DRKDVRLV 330 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~Gi-di~~~~~v 330 (430)
.+.+++|.++++.-+.+.++.+++....+..++|+.+ .+++.+|+|+|. .+..|- .+.++++|
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lV 294 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWV 294 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCEE
Confidence 4678999999999999999999887668899999886 346688999993 444443 35667777
Q ss_pred EE
Q 014134 331 CH 332 (430)
Q Consensus 331 i~ 332 (430)
|.
T Consensus 295 VI 296 (1108)
T 3l9o_A 295 IF 296 (1108)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 481
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=56.19 E-value=5.3 Score=32.92 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=13.2
Q ss_pred CEEEEcCCCChHHHHh
Q 014134 55 DCFCLMPTGGGKSMCY 70 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~ 70 (430)
-.++.||+|+|||...
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4678999999999654
No 482
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=56.08 E-value=8.5 Score=34.32 Aligned_cols=16 Identities=19% Similarity=0.166 Sum_probs=13.4
Q ss_pred EEEEcCCCChHHHHhH
Q 014134 56 CFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~~ 71 (430)
+++.|+.|+|||...-
T Consensus 7 ~~i~G~~GaGKTTll~ 22 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLR 22 (318)
T ss_dssp EEEEESSSSSCHHHHH
T ss_pred EEEEecCCCCHHHHHH
Confidence 6789999999997653
No 483
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=55.94 E-value=5.4 Score=33.52 Aligned_cols=19 Identities=26% Similarity=0.294 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.|+-+.+.||.|+|||...
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLL 47 (224)
T ss_dssp TTCEEEEEECTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566789999999999654
No 484
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=55.88 E-value=2.8 Score=34.70 Aligned_cols=15 Identities=20% Similarity=0.022 Sum_probs=12.9
Q ss_pred EEEEcCCCChHHHHh
Q 014134 56 CFCLMPTGGGKSMCY 70 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~ 70 (430)
+++.|++|||||..+
T Consensus 3 I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999754
No 485
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=55.77 E-value=5.6 Score=34.47 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.|+-+.+.||.|+|||...
T Consensus 36 ~Ge~~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLL 54 (266)
T ss_dssp TTCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4667889999999999654
No 486
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=55.43 E-value=10 Score=37.88 Aligned_cols=72 Identities=8% Similarity=0.113 Sum_probs=49.7
Q ss_pred ceEEEEeCccccHHHHHHHHHcC----CCcceeecCCCCHHHHHHHHHHhhcCCceEEEEecc-----cccc-c-cccCc
Q 014134 259 TCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG-I-DRKDV 327 (430)
Q Consensus 259 ~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~~~G-i-di~~~ 327 (430)
.++||.++++.-+.+.++.+++. ++.+..++|+.+...+...+. ...+|+|+|.- +..| + ++..+
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 68999999998888888877764 788999999886433222221 24789999953 2223 3 56677
Q ss_pred eEEEEec
Q 014134 328 RLVCHFN 334 (430)
Q Consensus 328 ~~vi~~~ 334 (430)
++||.-.
T Consensus 138 ~~vViDE 144 (696)
T 2ykg_A 138 TLMIFDE 144 (696)
T ss_dssp SEEEEET
T ss_pred cEEEEeC
Confidence 8887543
No 487
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=55.37 E-value=9.3 Score=34.12 Aligned_cols=15 Identities=20% Similarity=-0.119 Sum_probs=12.9
Q ss_pred EEEEcCCCChHHHHh
Q 014134 56 CFCLMPTGGGKSMCY 70 (430)
Q Consensus 56 ~lv~a~tGsGKT~~~ 70 (430)
+.+.||+|||||..+
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999665
No 488
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=55.37 E-value=5.9 Score=34.12 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.|+-+.+.||.|+|||...
T Consensus 32 ~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999654
No 489
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=55.34 E-value=7.9 Score=31.75 Aligned_cols=56 Identities=7% Similarity=-0.006 Sum_probs=34.0
Q ss_pred CCceEEEEeCccccHHH-HHHHHHc---CCCcceeecCCCCHHHHHHHHHHhhcCCceEEEEec
Q 014134 257 GDTCAIVYCLERTTCDE-LSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~-l~~~l~~---~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (430)
.+.++||+|+++.-+.+ +.+.+.. .+..+..++|+.....+...+. +..+|+|+|.
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 36689999999888777 5555543 3677888888764332211111 2467888885
No 490
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=55.07 E-value=6 Score=33.63 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.|+-+.+.+|.|+|||...
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567889999999999654
No 491
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=54.96 E-value=7.1 Score=28.18 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=32.6
Q ss_pred CCceEEEEeCccccHHHHHHHHHcCCCc-ceeecCCCCHH
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLNDK 295 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~-~~~~hg~~~~~ 295 (430)
++.++++||.+-..+...+..|.+.|+. +..+.|++..-
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W 96 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW 96 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHHH
Confidence 4678999999988899999999999985 77889987543
No 492
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=54.93 E-value=11 Score=27.20 Aligned_cols=38 Identities=8% Similarity=0.082 Sum_probs=31.8
Q ss_pred cCCceEEEEeCccccHHHHHHHHHcCCCcceeecCCCC
Q 014134 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (430)
Q Consensus 256 ~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~hg~~~ 293 (430)
.+..++++||.+-..+...+..|.+.|+....+.|++.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 35678999999988889999999999986677888864
No 493
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=54.51 E-value=6.3 Score=33.28 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCChHHHHhH
Q 014134 52 SGRDCFCLMPTGGGKSMCYQ 71 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~~ 71 (430)
.+..+.+.++.|||||..+-
T Consensus 15 ~~~~i~i~G~~gsGKst~~~ 34 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAK 34 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34568899999999998664
No 494
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=54.49 E-value=6 Score=31.74 Aligned_cols=16 Identities=19% Similarity=0.017 Sum_probs=13.1
Q ss_pred CEEEEcCCCChHHHHh
Q 014134 55 DCFCLMPTGGGKSMCY 70 (430)
Q Consensus 55 ~~lv~a~tGsGKT~~~ 70 (430)
-+++.|++|+|||...
T Consensus 8 ~i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLL 23 (174)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4778999999999643
No 495
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=54.43 E-value=7.2 Score=35.77 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.++.+++.||+|+|||...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp TCCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567899999999999654
No 496
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=54.25 E-value=6.2 Score=34.08 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.|+-+.+.||.|+|||...
T Consensus 31 ~Ge~~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFL 49 (262)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566789999999999654
No 497
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=54.17 E-value=53 Score=23.51 Aligned_cols=46 Identities=7% Similarity=0.020 Sum_probs=33.7
Q ss_pred CceEEEEeC------ccccHHHHHHHHHcCCCcceeecCCCCHHHHHHHHHH
Q 014134 258 DTCAIVYCL------ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDD 303 (430)
Q Consensus 258 ~~~~iVf~~------s~~~~~~l~~~l~~~~~~~~~~hg~~~~~~r~~~~~~ 303 (430)
..+++||.. ....|....+.|.+.++....+.-...+..+..+.+.
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~ 68 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEY 68 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH
Confidence 457999987 4889999999999998887665544455555555443
No 498
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=54.12 E-value=5.3 Score=34.08 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCChHHHHh
Q 014134 52 SGRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 52 ~~~~~lv~a~tGsGKT~~~ 70 (430)
.|+-+.+.+|.|+|||...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIF 45 (243)
T ss_dssp TTEEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566889999999999654
No 499
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=53.99 E-value=7.3 Score=37.78 Aligned_cols=18 Identities=28% Similarity=0.222 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCChHHHHh
Q 014134 53 GRDCFCLMPTGGGKSMCY 70 (430)
Q Consensus 53 ~~~~lv~a~tGsGKT~~~ 70 (430)
..+++|.|.||||||.+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L 231 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGV 231 (574)
T ss_dssp SCCEEEECCTTSSHHHHH
T ss_pred CCeeEEECCCCCCHHHHH
Confidence 468999999999999664
No 500
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=53.45 E-value=7 Score=29.39 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=32.1
Q ss_pred CCceEEEEeCccccHHHHHHHHHcCCCc-ceeecCCCCH
Q 014134 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 294 (430)
Q Consensus 257 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~-~~~~hg~~~~ 294 (430)
++.++++||.+-..+...+..|.+.|+. +..+.|++..
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 119 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSA 119 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 4668999999988899999999998885 7888998754
Done!