BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014135
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 105 bits (263), Expect = 4e-23, Method: Composition-based stats.
Identities = 51/106 (48%), Positives = 76/106 (71%), Gaps = 3/106 (2%)
Query: 12 LRKGLWSPEEDEKLLNYITKHGHGCWSSVPK-LAGLQRCGKSCRLRWINYLRPDLKRGAF 70
L KG W+ EED+K++ + K+G W+ + K L G R GK CR RW N+L P++K+ ++
Sbjct: 5 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG--RLGKQCRERWHNHLNPEVKKSSW 62
Query: 71 SVQEESLIVELHAVLGNRWSQIAAQLPGRTDDEIKNLWNSSIKKKL 116
+ +E+ +I E H VLGNRW++IA LPGRTD+ +KN WNS+IK+K+
Sbjct: 63 TEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 63 PDLKRGAFSVQEESLIVELHAVLGNR-WSQIAAQLPGRTDDEIKNLWNSSIKKKLRQ 118
PDL +G ++ +E+ ++EL G + W+ IA L GR + + W++ + ++++
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKK 59
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 101 bits (251), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 75/106 (70%), Gaps = 3/106 (2%)
Query: 12 LRKGLWSPEEDEKLLNYITKHGHGCWSSVPK-LAGLQRCGKSCRLRWINYLRPDLKRGAF 70
L KG W+ EED++++ + K+G WS + K L G R GK CR RW N+L P++K+ ++
Sbjct: 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSW 113
Query: 71 SVQEESLIVELHAVLGNRWSQIAAQLPGRTDDEIKNLWNSSIKKKL 116
+ +E+ +I + H LGNRW++IA LPGRTD+ IKN WNS++++K+
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 100 bits (250), Expect = 1e-21, Method: Composition-based stats.
Identities = 47/107 (43%), Positives = 77/107 (71%), Gaps = 3/107 (2%)
Query: 11 KLRKGLWSPEEDEKLLNYITKHGHGCWSSVPK-LAGLQRCGKSCRLRWINYLRPDLKRGA 69
+L KG W+ EED++++ ++ K+G WS + K L G R GK CR RW N+L P++K+ +
Sbjct: 24 ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG--RIGKQCRERWHNHLNPEVKKTS 81
Query: 70 FSVQEESLIVELHAVLGNRWSQIAAQLPGRTDDEIKNLWNSSIKKKL 116
++ +E+ +I + H LGNRW++IA LPGRTD+ +KN WNS++++K+
Sbjct: 82 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 100 bits (248), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/107 (44%), Positives = 76/107 (71%), Gaps = 3/107 (2%)
Query: 11 KLRKGLWSPEEDEKLLNYITKHGHGCWSSVPK-LAGLQRCGKSCRLRWINYLRPDLKRGA 69
+L KG W+ EED++++ + K+G WS + K L G R GK CR RW N+L P++K+ +
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTS 58
Query: 70 FSVQEESLIVELHAVLGNRWSQIAAQLPGRTDDEIKNLWNSSIKKKL 116
++ +E+ +I + H LGNRW++IA LPGRTD+ IKN WNS++++K+
Sbjct: 59 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 64 DLKRGAFSVQEESLIVELHAVLG-NRWSQIAAQLPGRTDDEIKNLWNSSIKKKLRQ 118
+L +G ++ +E+ +++L G RWS IA L GR + + W++ + ++++
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 56
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 100 bits (248), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/106 (45%), Positives = 75/106 (70%), Gaps = 3/106 (2%)
Query: 12 LRKGLWSPEEDEKLLNYITKHGHGCWSSVPK-LAGLQRCGKSCRLRWINYLRPDLKRGAF 70
L KG W+ EED++++ + K+G WS + K L G R GK CR RW N+L P++K+ ++
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSW 59
Query: 71 SVQEESLIVELHAVLGNRWSQIAAQLPGRTDDEIKNLWNSSIKKKL 116
+ +E+ +I + H LGNRW++IA LPGRTD+ IKN WNS++++K+
Sbjct: 60 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 28.9 bits (63), Expect = 5.2, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 65 LKRGAFSVQEESLIVELHAVLG-NRWSQIAAQLPGRTDDEIKNLWNSSIKKKLRQ 118
L +G ++ +E+ +++L G RWS IA L GR + + W++ + ++++
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 56
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 63/105 (60%), Gaps = 5/105 (4%)
Query: 14 KGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGL--QRCGKSCRLRWINYLRPDLKRGAFS 71
KG ++ ED+ + Y+ ++G W P++ R K CR RW N+L P + + A++
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 72 VQEESLIVELHAVLGNRWSQIAAQLPGRTDDEIKNLWNSSIKKKL 116
+E+ I + LG++WS IA +PGRTD+ IKN WNSSI K++
Sbjct: 59 PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 13 RKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSV 72
+K ++PEEDE L + +HG W + R + CR RW NYL P + ++
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSD-WKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 73 QEESLIVELHAVLGNRWSQIAAQLPGRTDDEIKNLW 108
+E++L+V+ G +W+ IA PGRTD IKN W
Sbjct: 68 EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 18 SPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSVQEESL 77
+ EED KL + ++G W + +L + R + CR RW NY+ P L+ +S +E+ L
Sbjct: 5 TEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 78 IVELHAVLGNRWSQIAAQLPGRTDDEIKNLW 108
+ + +A G +W++I+ L R+D+ I+N W
Sbjct: 64 LDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 41/52 (78%)
Query: 65 LKRGAFSVQEESLIVELHAVLGNRWSQIAAQLPGRTDDEIKNLWNSSIKKKL 116
+K+ +++ +E+ +I + H LGNRW++IA LPGRTD+ IKN WNS++++K+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 42/53 (79%)
Query: 64 DLKRGAFSVQEESLIVELHAVLGNRWSQIAAQLPGRTDDEIKNLWNSSIKKKL 116
++K+ +++ +E+ ++ + H LGNRW++IA LPGRTD+ IKN WNS++++K+
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 12 LRKGLWSPEEDEKLLNYITKHGHGCWSSVPK-LAGLQRCGKSCRLRWINYLRPD 64
L KG W+ EED++L+ + K+G WS + K L G R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 12 LRKGLWSPEEDEKLLNYITKHGHGCWSSVPK-LAGLQRCGKSCRLRWINYLRPD 64
L KG W+ EED++++ + K+G WS + K L G R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 12 LRKGLWSPEEDEKLLNYITKHGHGCWSSVPK-LAGLQRCGKSCRLRWINYLRPD 64
L KG W+ EED++++ + K+G WS + K L G R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52
Score = 29.3 bits (64), Expect = 4.4, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 65 LKRGAFSVQEESLIVELHAVLG-NRWSQIAAQLPGRTDDEIKNLWNSSI 112
L +G ++ +E+ ++EL G RWS IA L GR + + W++ +
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 16 LWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFS 71
+W EDE L + K+G WS + L ++ K C+ RW +L P +K+ +S
Sbjct: 11 VWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 17 WSPEEDEKLLNYITKHGHGCWSSV 40
W+ EEDEKLL + K+G+G W+ +
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSWTQI 195
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 17 WSPEEDEKLLNYITKHGHGCWSSV 40
W+ EEDEKLL + K+G+G W+ +
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSWTQI 194
>pdb|4AMC|A Chain A, Crystal Structure Of Lactobacillus Reuteri 121
N-Terminally Truncated Glucansucrase Gtfa
Length = 1049
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 101 DDEIKNLWNSSIKKKLRQRGIDPNTHKPLSEVENDKEQQLTVINKNSDKASAESSKD 157
DD IKN N + + G+D H+ L++ EN+ + + + N + +A +S+D
Sbjct: 344 DDTIKNSLNHGLSDATNRWGLDAIVHQSLADRENNSTENVVIPNYSFVRAHDNNSQD 400
>pdb|1Q9U|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
Duf302 From Bacillus Stearothermophilus
pdb|1Q9U|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
Duf302 From Bacillus Stearothermophilus
Length = 130
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 107 LWNSSIKKKLRQRGIDPNTHKPLSEVENDKEQQLTVINKN 146
LW S+ +KL+++G+D +T + EV N +E V+N+N
Sbjct: 34 LWQFSVTEKLQEKGLDFSTPMVILEVXNPQEAA-RVLNEN 72
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 29.3 bits (64), Expect = 4.4, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 12 LRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPD 64
L K W+ EEDEKL + ++G W + R C+ RW L P+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 29.3 bits (64), Expect = 4.4, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 12 LRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPD 64
L K W+ EEDEKL + ++G W + R C+ RW L P+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|3SSM|A Chain A, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 1
pdb|3SSM|B Chain B, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 1
pdb|3SSM|C Chain C, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 1
pdb|3SSM|D Chain D, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 1
pdb|3SSN|A Chain A, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg, Sah, And Mycinamycin Vi
pdb|3SSN|B Chain B, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg, Sah, And Mycinamycin Vi
pdb|3SSN|C Chain C, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg, Sah, And Mycinamycin Vi
pdb|3SSN|D Chain D, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg, Sah, And Mycinamycin Vi
pdb|3SSO|A Chain A, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 2
pdb|3SSO|B Chain B, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 2
pdb|3SSO|C Chain C, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 2
pdb|3SSO|D Chain D, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 2
pdb|3SSO|E Chain E, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 2
pdb|3SSO|F Chain F, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 2
Length = 419
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 336 KSNDQEAQIRALEGDQEDIKWSEYLNT---PFFL----GSTIQNH-QTS-QSMYSDVKPE 386
KS+ E +IR ++GDQ D ++ + + PF + GS I H +TS +++ V+P
Sbjct: 258 KSHVDELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGSHINAHVRTSFAALFPHVRPG 317
Query: 387 AHFISEGSNTTTW 399
++ E T W
Sbjct: 318 GLYVIEDMWTAYW 330
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,565,923
Number of Sequences: 62578
Number of extensions: 423853
Number of successful extensions: 1024
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 979
Number of HSP's gapped (non-prelim): 37
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)