Query 014135
Match_columns 430
No_of_seqs 271 out of 1777
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 06:06:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014135.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014135hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h89_C C-MYB, MYB proto-oncoge 100.0 5.7E-36 1.9E-40 270.5 5.5 151 12-163 4-155 (159)
2 1h8a_C AMV V-MYB, MYB transfor 100.0 4.8E-33 1.6E-37 243.3 9.2 114 2-116 15-128 (128)
3 3zqc_A MYB3; transcription-DNA 100.0 2.2E-32 7.7E-37 240.3 9.1 127 14-145 2-128 (131)
4 1gv2_A C-MYB, MYB proto-oncoge 100.0 3.2E-32 1.1E-36 230.0 9.6 105 11-116 1-105 (105)
5 2k9n_A MYB24; R2R3 domain, DNA 100.0 5.7E-32 1.9E-36 230.0 8.2 104 14-118 1-104 (107)
6 3osg_A MYB21; transcription-DN 100.0 3.5E-31 1.2E-35 231.4 9.5 107 7-115 4-110 (126)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 1E-30 3.4E-35 236.1 8.1 113 3-116 47-159 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 1.3E-27 4.4E-32 208.8 5.6 123 40-163 1-124 (128)
9 2dim_A Cell division cycle 5-l 99.8 5.5E-21 1.9E-25 150.9 1.7 67 8-75 3-69 (70)
10 3osg_A MYB21; transcription-DN 99.8 3E-20 1E-24 162.1 5.4 108 62-169 6-113 (126)
11 1gv2_A C-MYB, MYB proto-oncoge 99.8 5.8E-20 2E-24 154.9 5.3 100 64-163 1-101 (105)
12 2k9n_A MYB24; R2R3 domain, DNA 99.8 1.9E-19 6.4E-24 152.8 3.4 97 67-163 1-98 (107)
13 3zqc_A MYB3; transcription-DNA 99.8 3.8E-19 1.3E-23 156.0 4.9 99 67-165 2-101 (131)
14 1ign_A Protein (RAP1); RAP1,ye 99.7 1.9E-17 6.6E-22 158.4 6.7 106 9-115 3-200 (246)
15 2dim_A Cell division cycle 5-l 99.7 3E-17 1E-21 129.5 6.2 65 62-126 4-69 (70)
16 2llk_A Cyclin-D-binding MYB-li 99.6 8.4E-17 2.9E-21 128.8 5.3 58 54-112 10-67 (73)
17 2juh_A Telomere binding protei 99.6 2.8E-17 9.6E-22 143.2 2.4 83 8-91 11-103 (121)
18 2din_A Cell division cycle 5-l 99.6 2.6E-16 9E-21 122.7 6.9 61 60-121 2-62 (66)
19 2d9a_A B-MYB, MYB-related prot 99.6 7.8E-17 2.7E-21 123.3 3.2 57 9-66 3-59 (60)
20 2cu7_A KIAA1915 protein; nucle 99.6 3.8E-16 1.3E-20 123.9 7.0 66 61-127 3-68 (72)
21 1gvd_A MYB proto-oncogene prot 99.6 1.1E-16 3.8E-21 119.1 3.0 52 12-64 1-52 (52)
22 2roh_A RTBP1, telomere binding 99.6 2E-16 6.9E-21 138.0 4.3 79 9-88 26-114 (122)
23 1guu_A C-MYB, MYB proto-oncoge 99.6 1.9E-16 6.6E-21 117.7 2.0 52 12-64 1-52 (52)
24 2d9a_A B-MYB, MYB-related prot 99.6 8.4E-16 2.9E-20 117.6 5.3 55 62-116 3-58 (60)
25 1ity_A TRF1; helix-turn-helix, 99.6 4.8E-16 1.7E-20 122.3 2.7 64 8-71 4-68 (69)
26 1guu_A C-MYB, MYB proto-oncoge 99.6 3.2E-15 1.1E-19 111.1 6.0 50 65-114 1-51 (52)
27 1gvd_A MYB proto-oncogene prot 99.5 4.8E-15 1.6E-19 110.2 6.1 50 65-114 1-51 (52)
28 1ity_A TRF1; helix-turn-helix, 99.5 6.5E-15 2.2E-19 115.8 6.7 61 61-121 4-67 (69)
29 1x41_A Transcriptional adaptor 99.5 2.7E-15 9.4E-20 115.1 2.6 55 9-64 3-57 (60)
30 3sjm_A Telomeric repeat-bindin 99.5 2E-15 6.9E-20 117.7 1.7 57 10-66 7-64 (64)
31 2din_A Cell division cycle 5-l 99.5 8.5E-16 2.9E-20 119.8 -1.0 59 7-68 2-60 (66)
32 1w0t_A Telomeric repeat bindin 99.5 1.9E-14 6.4E-19 107.6 6.2 49 66-114 1-52 (53)
33 1x41_A Transcriptional adaptor 99.5 1.6E-14 5.4E-19 110.9 5.8 53 62-114 3-56 (60)
34 2llk_A Cyclin-D-binding MYB-li 99.5 9E-15 3.1E-19 117.1 2.6 62 2-67 11-72 (73)
35 3sjm_A Telomeric repeat-bindin 99.5 3.4E-14 1.2E-18 110.7 5.6 52 65-116 9-63 (64)
36 2yum_A ZZZ3 protein, zinc fing 99.5 3.6E-14 1.2E-18 113.1 5.7 59 62-120 3-67 (75)
37 2elk_A SPCC24B10.08C protein; 99.5 1.3E-14 4.4E-19 110.8 2.2 52 10-61 5-56 (58)
38 2yum_A ZZZ3 protein, zinc fing 99.5 6.9E-15 2.4E-19 117.2 0.4 60 9-69 3-67 (75)
39 2elk_A SPCC24B10.08C protein; 99.4 1E-13 3.5E-18 105.8 6.3 50 63-112 5-56 (58)
40 1w0t_A Telomeric repeat bindin 99.4 1.7E-14 5.7E-19 107.9 1.8 50 13-62 1-51 (53)
41 2cu7_A KIAA1915 protein; nucle 99.4 3.3E-14 1.1E-18 112.7 0.5 58 8-67 3-60 (72)
42 2juh_A Telomere binding protei 99.4 1E-13 3.5E-18 120.8 2.9 82 61-142 11-103 (121)
43 2ltp_A Nuclear receptor corepr 99.0 6.3E-14 2.2E-18 115.8 0.0 56 60-115 9-64 (89)
44 2aje_A Telomere repeat-binding 99.3 4.8E-13 1.7E-17 113.9 3.9 80 7-86 6-94 (105)
45 2ckx_A NGTRF1, telomere bindin 99.3 7.6E-13 2.6E-17 108.3 3.8 69 15-84 1-79 (83)
46 2yus_A SWI/SNF-related matrix- 99.3 5.9E-13 2E-17 107.9 2.8 53 6-60 10-62 (79)
47 1ign_A Protein (RAP1); RAP1,ye 99.3 7.6E-13 2.6E-17 126.7 3.5 78 63-144 4-87 (246)
48 2roh_A RTBP1, telomere binding 99.3 1.3E-12 4.3E-17 114.1 4.0 77 63-139 27-114 (122)
49 2cqr_A RSGI RUH-043, DNAJ homo 99.3 3.2E-12 1.1E-16 102.2 5.9 51 63-113 14-68 (73)
50 2yus_A SWI/SNF-related matrix- 99.3 4E-12 1.4E-16 103.0 5.6 48 64-111 15-62 (79)
51 2ltp_A Nuclear receptor corepr 98.8 2.2E-12 7.5E-17 106.5 0.0 54 7-62 9-62 (89)
52 2aje_A Telomere repeat-binding 99.2 2.2E-11 7.5E-16 103.7 5.6 52 63-114 9-65 (105)
53 2cqr_A RSGI RUH-043, DNAJ homo 99.2 4.4E-12 1.5E-16 101.4 1.1 56 6-62 10-68 (73)
54 2ckx_A NGTRF1, telomere bindin 99.1 5.3E-11 1.8E-15 97.4 6.6 48 68-115 1-53 (83)
55 1x58_A Hypothetical protein 49 99.1 9.3E-11 3.2E-15 90.8 6.0 50 65-114 6-58 (62)
56 2cjj_A Radialis; plant develop 99.1 1.4E-10 4.8E-15 96.7 6.7 58 66-123 7-69 (93)
57 3hm5_A DNA methyltransferase 1 98.9 2.8E-09 9.7E-14 88.8 6.5 68 49-120 16-88 (93)
58 2cjj_A Radialis; plant develop 98.8 4.6E-10 1.6E-14 93.7 0.5 48 13-61 7-57 (93)
59 2eqr_A N-COR1, N-COR, nuclear 98.8 7E-09 2.4E-13 79.7 6.7 47 66-112 11-57 (61)
60 2cqq_A RSGI RUH-037, DNAJ homo 98.7 1.1E-08 3.9E-13 81.4 5.3 57 64-121 5-65 (72)
61 2eqr_A N-COR1, N-COR, nuclear 98.6 8.1E-09 2.8E-13 79.4 2.2 53 7-61 5-57 (61)
62 1x58_A Hypothetical protein 49 98.6 7.7E-09 2.6E-13 80.1 1.9 49 12-62 6-57 (62)
63 2iw5_B Protein corest, REST co 98.5 6E-08 2.1E-12 92.3 5.2 49 66-114 132-180 (235)
64 2xag_B REST corepressor 1; ami 98.4 1.8E-07 6.3E-12 97.7 5.2 45 68-112 381-425 (482)
65 1wgx_A KIAA1903 protein; MYB D 98.4 3.2E-07 1.1E-11 73.3 5.2 48 67-114 8-59 (73)
66 2cqq_A RSGI RUH-037, DNAJ homo 98.4 6.2E-08 2.1E-12 77.1 0.8 50 11-62 5-57 (72)
67 2iw5_B Protein corest, REST co 98.3 2.6E-07 8.9E-12 88.0 2.3 54 7-62 126-179 (235)
68 1fex_A TRF2-interacting telome 98.3 8.8E-07 3E-11 67.8 4.8 47 67-113 2-58 (59)
69 1wgx_A KIAA1903 protein; MYB D 98.2 2.3E-07 7.9E-12 74.1 1.2 48 14-62 8-58 (73)
70 1fex_A TRF2-interacting telome 98.1 4.9E-07 1.7E-11 69.3 0.9 48 14-62 2-58 (59)
71 1ug2_A 2610100B20RIK gene prod 97.9 1.7E-05 5.9E-10 65.5 6.6 52 68-119 34-88 (95)
72 2yqk_A Arginine-glutamic acid 97.9 2.2E-05 7.4E-10 60.6 6.5 48 62-109 4-52 (63)
73 1ofc_X ISWI protein; nuclear p 97.9 2.7E-05 9.4E-10 77.2 8.2 102 15-117 111-278 (304)
74 4eef_G F-HB80.4, designed hema 97.8 4.9E-06 1.7E-10 66.4 1.1 43 67-109 20-66 (74)
75 4eef_G F-HB80.4, designed hema 97.8 4.8E-06 1.6E-10 66.4 0.7 44 14-58 20-66 (74)
76 2lr8_A CAsp8-associated protei 96.9 5E-06 1.7E-10 65.3 0.0 45 69-114 16-63 (70)
77 4iej_A DNA methyltransferase 1 97.7 7E-05 2.4E-09 62.3 6.6 62 55-120 22-88 (93)
78 2yqk_A Arginine-glutamic acid 97.6 2.6E-05 9E-10 60.1 2.5 49 9-59 4-53 (63)
79 3hm5_A DNA methyltransferase 1 97.5 1.4E-05 4.7E-10 66.6 0.0 54 3-61 23-80 (93)
80 2crg_A Metastasis associated p 97.3 0.00036 1.2E-08 54.9 5.9 43 67-109 8-51 (70)
81 2xag_B REST corepressor 1; ami 97.3 6.9E-05 2.4E-09 78.4 2.2 48 12-61 378-425 (482)
82 4a69_C Nuclear receptor corepr 97.3 0.00035 1.2E-08 58.1 6.0 44 67-110 43-86 (94)
83 2ebi_A DNA binding protein GT- 96.8 0.00092 3.2E-08 53.9 4.3 50 66-115 3-66 (86)
84 2crg_A Metastasis associated p 96.8 0.00037 1.3E-08 54.8 1.8 45 13-59 7-52 (70)
85 4a69_C Nuclear receptor corepr 96.8 0.00035 1.2E-08 58.0 1.7 44 14-59 43-86 (94)
86 4b4c_A Chromodomain-helicase-D 96.7 0.0033 1.1E-07 58.2 7.5 46 68-113 135-195 (211)
87 2ebi_A DNA binding protein GT- 96.6 0.00017 5.8E-09 58.3 -1.5 50 12-61 2-63 (86)
88 2y9y_A Imitation switch protei 96.4 0.0073 2.5E-07 61.4 8.4 104 15-118 124-295 (374)
89 1ug2_A 2610100B20RIK gene prod 96.3 0.0013 4.5E-08 54.4 1.6 50 10-60 29-80 (95)
90 2lr8_A CAsp8-associated protei 95.1 0.00087 3E-08 52.7 0.0 47 13-61 13-61 (70)
91 4iej_A DNA methyltransferase 1 94.4 0.013 4.4E-07 48.7 1.6 49 12-61 28-80 (93)
92 1irz_A ARR10-B; helix-turn-hel 93.4 0.2 6.7E-06 38.9 6.4 48 65-112 5-57 (64)
93 4b4c_A Chromodomain-helicase-D 93.3 0.061 2.1E-06 49.6 4.1 34 9-42 129-162 (211)
94 2xb0_X Chromo domain-containin 90.3 0.13 4.5E-06 50.1 2.8 28 15-42 169-196 (270)
95 1ofc_X ISWI protein; nuclear p 90.1 0.44 1.5E-05 47.2 6.4 46 68-113 111-157 (304)
96 1irz_A ARR10-B; helix-turn-hel 84.1 0.44 1.5E-05 36.9 1.9 49 10-58 3-54 (64)
97 2xb0_X Chromo domain-containin 68.3 11 0.00037 36.6 7.1 50 67-116 3-57 (270)
98 2jrz_A Histone demethylase jar 52.5 18 0.00062 30.4 5.0 40 76-115 43-94 (117)
99 2rq5_A Protein jumonji; develo 51.6 3.5 0.00012 35.4 0.4 57 24-83 46-113 (121)
100 2li6_A SWI/SNF chromatin-remod 51.6 9.5 0.00033 32.0 3.1 39 77-115 53-99 (116)
101 2lm1_A Lysine-specific demethy 51.2 21 0.00073 29.2 5.1 40 76-115 47-98 (107)
102 2cxy_A BAF250B subunit, HBAF25 51.2 18 0.00061 30.7 4.7 41 76-116 54-106 (125)
103 2y9y_A Imitation switch protei 47.8 24 0.00084 35.7 5.8 46 68-114 124-171 (374)
104 2eqy_A RBP2 like, jumonji, at 47.2 25 0.00084 29.8 5.0 39 77-115 46-96 (122)
105 3cz6_A DNA-binding protein RAP 46.0 15 0.00051 33.3 3.5 29 10-41 110-146 (168)
106 1c20_A DEAD ringer protein; DN 45.6 27 0.00091 29.7 5.0 40 76-115 55-107 (128)
107 1kkx_A Transcription regulator 44.5 14 0.00047 31.6 3.0 41 77-117 52-100 (123)
108 2jxj_A Histone demethylase jar 42.7 19 0.00063 29.0 3.4 39 77-115 40-90 (96)
109 2rq5_A Protein jumonji; develo 42.2 32 0.0011 29.3 4.9 77 14-116 7-98 (121)
110 2o8x_A Probable RNA polymerase 42.2 26 0.0009 25.2 3.9 41 73-114 18-58 (70)
111 2kk0_A AT-rich interactive dom 41.2 29 0.001 30.3 4.6 41 76-116 67-120 (145)
112 2li6_A SWI/SNF chromatin-remod 37.9 6.2 0.00021 33.2 -0.3 39 24-63 53-98 (116)
113 1u78_A TC3 transposase, transp 37.2 1.3E+02 0.0043 24.3 7.8 87 15-106 5-98 (141)
114 1ku3_A Sigma factor SIGA; heli 36.4 36 0.0012 25.2 4.0 42 73-115 13-58 (73)
115 2jvw_A Uncharacterized protein 35.6 8.1 0.00028 31.5 0.1 46 22-80 18-70 (88)
116 3cz6_A DNA-binding protein RAP 32.8 33 0.0011 31.0 3.6 33 54-86 100-141 (168)
117 1ig6_A MRF-2, modulator recogn 32.0 11 0.00038 31.0 0.4 40 24-63 37-87 (107)
118 2p7v_B Sigma-70, RNA polymeras 30.0 40 0.0014 24.6 3.2 41 73-114 8-52 (68)
119 1ig6_A MRF-2, modulator recogn 29.1 28 0.00095 28.6 2.3 40 76-115 36-88 (107)
120 2jrz_A Histone demethylase jar 29.0 9.5 0.00033 32.1 -0.6 40 24-63 44-93 (117)
121 1c20_A DEAD ringer protein; DN 27.7 9.9 0.00034 32.4 -0.7 40 24-63 56-106 (128)
122 2k27_A Paired box protein PAX- 27.3 2.2E+02 0.0075 23.8 7.9 77 15-96 24-111 (159)
123 3hug_A RNA polymerase sigma fa 26.5 62 0.0021 25.0 3.9 41 73-114 40-80 (92)
124 2kk0_A AT-rich interactive dom 22.3 27 0.00093 30.4 1.1 40 24-63 68-118 (145)
125 3i4p_A Transcriptional regulat 21.6 51 0.0017 28.4 2.7 45 73-118 3-48 (162)
126 2yqf_A Ankyrin-1; death domain 20.7 1.3E+02 0.0045 24.5 5.0 35 71-106 14-48 (111)
127 1x3u_A Transcriptional regulat 20.7 1.5E+02 0.005 21.6 4.9 42 70-114 17-58 (79)
128 1or7_A Sigma-24, RNA polymeras 20.1 1.2E+02 0.0039 25.8 4.7 30 85-115 155-184 (194)
No 1
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=5.7e-36 Score=270.51 Aligned_cols=151 Identities=23% Similarity=0.480 Sum_probs=107.8
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCCCccccccccCccCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-chh
Q 014135 12 LRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSVQEESLIVELHAVLGN-RWS 90 (430)
Q Consensus 12 lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Llelv~k~G~-~Ws 90 (430)
+++++||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||. +|.
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~ 82 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS 82 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence 6789999999999999999999889999999998 99999999999999999999999999999999999999995 799
Q ss_pred HHhhhCCCCCHHHHHHHHhhhhhHHHHhCCCCCCCCCcchhhhhhhcchhhHhhccCCchhhhhhhhHHHhhc
Q 014135 91 QIAAQLPGRTDDEIKNLWNSSIKKKLRQRGIDPNTHKPLSEVENDKEQQLTVINKNSDKASAESSKDLAAEIM 163 (430)
Q Consensus 91 ~IA~~LpgRT~~QcR~RW~~~Lkk~lkk~~~~~~edk~L~e~~~~~g~~w~~Iak~~~k~~~~~~k~~~~~~~ 163 (430)
.||..|+|||+.||++||..+|.+.+++.+|+++||..|++++.++|.+|..|++..+.++++.+++......
T Consensus 83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~ 155 (159)
T 1h89_C 83 VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 155 (159)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTT
T ss_pred HHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999766544
No 2
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.98 E-value=4.8e-33 Score=243.26 Aligned_cols=114 Identities=40% Similarity=0.809 Sum_probs=103.4
Q ss_pred CCCcccccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCccCCccccccccccccCCCCCCCCCCHHHHHHHHHH
Q 014135 2 GRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSVQEESLIVEL 81 (430)
Q Consensus 2 gR~~~~~kp~lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Llel 81 (430)
.||..+++|.+++|+||+|||++|+++|++||.++|.+||..|+ +|++.||++||.++|+|.+++++||+|||++|+++
T Consensus 15 ~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~ 93 (128)
T 1h8a_C 15 HRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA 93 (128)
T ss_dssp -------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHH
T ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHH
Confidence 58999999999999999999999999999999888999999998 99999999999999999999999999999999999
Q ss_pred HHHhCCchhHHhhhCCCCCHHHHHHHHhhhhhHHH
Q 014135 82 HAVLGNRWSQIAAQLPGRTDDEIKNLWNSSIKKKL 116 (430)
Q Consensus 82 v~k~G~~Ws~IA~~LpgRT~~QcR~RW~~~Lkk~l 116 (430)
|.+||++|..||+.|||||+.+|++||+.++++++
T Consensus 94 ~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 94 HKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999998753
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.97 E-value=2.2e-32 Score=240.26 Aligned_cols=127 Identities=33% Similarity=0.635 Sum_probs=107.5
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCccccccccCccCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhHHh
Q 014135 14 KGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSVQEESLIVELHAVLGNRWSQIA 93 (430)
Q Consensus 14 Kg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Llelv~k~G~~Ws~IA 93 (430)
||+||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||++|..||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 79999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHhhhhhHHHHhCCCCCCCCCcchhhhhhhcchhhHhhc
Q 014135 94 AQLPGRTDDEIKNLWNSSIKKKLRQRGIDPNTHKPLSEVENDKEQQLTVINK 145 (430)
Q Consensus 94 ~~LpgRT~~QcR~RW~~~Lkk~lkk~~~~~~edk~L~e~~~~~g~~w~~Iak 145 (430)
+.|+|||+.+|++||+.+|++.+....++.+.-.+ ......+|+.|++
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~p----~~~kk~~~~~i~k 128 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLP----DRSKKRKAADVPK 128 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCCCC----CCC----------
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCcccccCc----hhhhhhhhhhcch
Confidence 99999999999999999999998877665433222 2333445555554
No 4
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.97 E-value=3.2e-32 Score=230.01 Aligned_cols=105 Identities=44% Similarity=0.873 Sum_probs=99.6
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCccccccccCccCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 014135 11 KLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSVQEESLIVELHAVLGNRWS 90 (430)
Q Consensus 11 ~lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Llelv~k~G~~Ws 90 (430)
.+++|+||+|||++|+++|++||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||.+|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999889999999998 99999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHhhhhhHHH
Q 014135 91 QIAAQLPGRTDDEIKNLWNSSIKKKL 116 (430)
Q Consensus 91 ~IA~~LpgRT~~QcR~RW~~~Lkk~l 116 (430)
.||+.|||||+.+|++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998753
No 5
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.97 E-value=5.7e-32 Score=230.02 Aligned_cols=104 Identities=30% Similarity=0.588 Sum_probs=100.4
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCccccccccCccCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhHHh
Q 014135 14 KGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSVQEESLIVELHAVLGNRWSQIA 93 (430)
Q Consensus 14 Kg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Llelv~k~G~~Ws~IA 93 (430)
||+||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||++|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHhhhhhHHHHh
Q 014135 94 AQLPGRTDDEIKNLWNSSIKKKLRQ 118 (430)
Q Consensus 94 ~~LpgRT~~QcR~RW~~~Lkk~lkk 118 (430)
+.|||||+.+||+||+.++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999887654
No 6
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=3.5e-31 Score=231.37 Aligned_cols=107 Identities=34% Similarity=0.633 Sum_probs=101.4
Q ss_pred cccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCccCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 014135 7 CYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSVQEESLIVELHAVLG 86 (430)
Q Consensus 7 ~~kp~lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Llelv~k~G 86 (430)
..++..++|+||+|||++|+++|.+||. +|.+||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||
T Consensus 4 ~~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G 81 (126)
T 3osg_A 4 VNLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG 81 (126)
T ss_dssp BC-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence 3467899999999999999999999997 8999999998 9999999999999999999999999999999999999999
Q ss_pred CchhHHhhhCCCCCHHHHHHHHhhhhhHH
Q 014135 87 NRWSQIAAQLPGRTDDEIKNLWNSSIKKK 115 (430)
Q Consensus 87 ~~Ws~IA~~LpgRT~~QcR~RW~~~Lkk~ 115 (430)
.+|..||+.|+|||+.+||+||+.++++.
T Consensus 82 ~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 82 RQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999887654
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=1e-30 Score=236.14 Aligned_cols=113 Identities=42% Similarity=0.817 Sum_probs=108.6
Q ss_pred CCcccccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCccCCccccccccccccCCCCCCCCCCHHHHHHHHHHH
Q 014135 3 RHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSVQEESLIVELH 82 (430)
Q Consensus 3 R~~~~~kp~lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Llelv 82 (430)
||..+++|.+++++||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|++++
T Consensus 47 Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~ 125 (159)
T 1h89_C 47 RWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 125 (159)
T ss_dssp HHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHH
T ss_pred HHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHH
Confidence 7889999999999999999999999999999878999999998 999999999999999999999999999999999999
Q ss_pred HHhCCchhHHhhhCCCCCHHHHHHHHhhhhhHHH
Q 014135 83 AVLGNRWSQIAAQLPGRTDDEIKNLWNSSIKKKL 116 (430)
Q Consensus 83 ~k~G~~Ws~IA~~LpgRT~~QcR~RW~~~Lkk~l 116 (430)
.+||++|..||+.|||||+++|++||+.++++++
T Consensus 126 ~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 126 KRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp HHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred HHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999988753
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.94 E-value=1.3e-27 Score=208.80 Aligned_cols=123 Identities=20% Similarity=0.428 Sum_probs=97.8
Q ss_pred cccccCccCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-chhHHhhhCCCCCHHHHHHHHhhhhhHHHHh
Q 014135 40 VPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSVQEESLIVELHAVLGN-RWSQIAAQLPGRTDDEIKNLWNSSIKKKLRQ 118 (430)
Q Consensus 40 IA~~l~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Llelv~k~G~-~Ws~IA~~LpgRT~~QcR~RW~~~Lkk~lkk 118 (430)
||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||..+|.+.+++
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788888 99999999999999999999999999999999999999995 7999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhhhhhcchhhHhhccCCchhhhhhhhHHHhhc
Q 014135 119 RGIDPNTHKPLSEVENDKEQQLTVINKNSDKASAESSKDLAAEIM 163 (430)
Q Consensus 119 ~~~~~~edk~L~e~~~~~g~~w~~Iak~~~k~~~~~~k~~~~~~~ 163 (430)
++|+++||..|++++.++|.+|..|++..+.++++.+++......
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTM 124 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTT
T ss_pred ccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999766554
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5.5e-21 Score=150.90 Aligned_cols=67 Identities=28% Similarity=0.604 Sum_probs=64.4
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCccCCccccccccccccCCCCCCCCCCHHHH
Q 014135 8 YKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSVQEE 75 (430)
Q Consensus 8 ~kp~lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED 75 (430)
..+.+++++||+|||++|+++|.+||.++|.+||..|+ +|+++||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 35789999999999999999999999889999999999 99999999999999999999999999998
No 10
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.79 E-value=3e-20 Score=162.08 Aligned_cols=108 Identities=18% Similarity=0.279 Sum_probs=99.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchhHHhhhCCCCCHHHHHHHHhhhhhHHHHhCCCCCCCCCcchhhhhhhcchhh
Q 014135 62 RPDLKRGAFSVQEESLIVELHAVLGNRWSQIAAQLPGRTDDEIKNLWNSSIKKKLRQRGIDPNTHKPLSEVENDKEQQLT 141 (430)
Q Consensus 62 ~p~lkkg~WT~EED~~Llelv~k~G~~Ws~IA~~LpgRT~~QcR~RW~~~Lkk~lkk~~~~~~edk~L~e~~~~~g~~w~ 141 (430)
.+..++++||+|||++|+++|.+||.+|..||+.|+||++.||+.||.++|.+.++++.|+++||..|++++.++|.+|.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~ 85 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA 85 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCchhhhhhhhHHHhhcCcCccC
Q 014135 142 VINKNSDKASAESSKDLAAEIMHPLEVS 169 (430)
Q Consensus 142 ~Iak~~~k~~~~~~k~~~~~~~~~~e~s 169 (430)
.|++..+.|++..+++......++...+
T Consensus 86 ~Ia~~l~gRt~~~~k~rw~~l~~k~~~p 113 (126)
T 3osg_A 86 IIAKFFPGRTDIHIKNRWVTISNKLGIP 113 (126)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999877666555444
No 11
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.79 E-value=5.8e-20 Score=154.88 Aligned_cols=100 Identities=18% Similarity=0.371 Sum_probs=94.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-chhHHhhhCCCCCHHHHHHHHhhhhhHHHHhCCCCCCCCCcchhhhhhhcchhhH
Q 014135 64 DLKRGAFSVQEESLIVELHAVLGN-RWSQIAAQLPGRTDDEIKNLWNSSIKKKLRQRGIDPNTHKPLSEVENDKEQQLTV 142 (430)
Q Consensus 64 ~lkkg~WT~EED~~Llelv~k~G~-~Ws~IA~~LpgRT~~QcR~RW~~~Lkk~lkk~~~~~~edk~L~e~~~~~g~~w~~ 142 (430)
++++++||+|||++|+++|.+||. +|..||+.|+|||+.||+.||..+|.+.+++++|+++||..|++++..+|.+|..
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 468999999999999999999996 7999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCchhhhhhhhHHHhhc
Q 014135 143 INKNSDKASAESSKDLAAEIM 163 (430)
Q Consensus 143 Iak~~~k~~~~~~k~~~~~~~ 163 (430)
|++..+.+++..+++......
T Consensus 81 Ia~~l~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 81 IAKLLPGRTDNAIKNHWNSTM 101 (105)
T ss_dssp HHTTCTTCCHHHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHH
Confidence 999999999999999766544
No 12
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.76 E-value=1.9e-19 Score=152.81 Aligned_cols=97 Identities=19% Similarity=0.268 Sum_probs=91.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-chhHHhhhCCCCCHHHHHHHHhhhhhHHHHhCCCCCCCCCcchhhhhhhcchhhHhhc
Q 014135 67 RGAFSVQEESLIVELHAVLGN-RWSQIAAQLPGRTDDEIKNLWNSSIKKKLRQRGIDPNTHKPLSEVENDKEQQLTVINK 145 (430)
Q Consensus 67 kg~WT~EED~~Llelv~k~G~-~Ws~IA~~LpgRT~~QcR~RW~~~Lkk~lkk~~~~~~edk~L~e~~~~~g~~w~~Iak 145 (430)
|++||+|||++|+++|.+||. +|..||..|+|||+.||+.||.++|.+.+++++|+++||..|++++.++|.+|..|++
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 589999999999999999995 8999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhhhhhhHHHhhc
Q 014135 146 NSDKASAESSKDLAAEIM 163 (430)
Q Consensus 146 ~~~k~~~~~~k~~~~~~~ 163 (430)
..+.++++.+++......
T Consensus 81 ~l~gRt~~~~k~rw~~l~ 98 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMMIA 98 (107)
T ss_dssp HHSSSCHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHH
Confidence 999999999999655443
No 13
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.75 E-value=3.8e-19 Score=156.00 Aligned_cols=99 Identities=18% Similarity=0.315 Sum_probs=94.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CchhHHhhhCCCCCHHHHHHHHhhhhhHHHHhCCCCCCCCCcchhhhhhhcchhhHhhc
Q 014135 67 RGAFSVQEESLIVELHAVLG-NRWSQIAAQLPGRTDDEIKNLWNSSIKKKLRQRGIDPNTHKPLSEVENDKEQQLTVINK 145 (430)
Q Consensus 67 kg~WT~EED~~Llelv~k~G-~~Ws~IA~~LpgRT~~QcR~RW~~~Lkk~lkk~~~~~~edk~L~e~~~~~g~~w~~Iak 145 (430)
+|+||+|||++|+++|.+|| .+|..||..|+|||+.||+.||..+|.+.++++.|+++||..|++++.++|.+|..|++
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~ 81 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK 81 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 78999999999999999999 78999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhhhhhhHHHhhcCc
Q 014135 146 NSDKASAESSKDLAAEIMHP 165 (430)
Q Consensus 146 ~~~k~~~~~~k~~~~~~~~~ 165 (430)
..+.+++..+++......++
T Consensus 82 ~l~gRt~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 82 LIPGRTDNAIKNRWNSSISK 101 (131)
T ss_dssp TSTTCCHHHHHHHHHHTTGG
T ss_pred HcCCCCHHHHHHHHHHHHHH
Confidence 99999999999987666543
No 14
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.68 E-value=1.9e-17 Score=158.36 Aligned_cols=106 Identities=18% Similarity=0.279 Sum_probs=92.1
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHhCCCC-----ccccccccCccCCccccccccccccCCCCC-----------------
Q 014135 9 KQKLRKGLWSPEEDEKLLNYITKHGHGC-----WSSVPKLAGLQRCGKSCRLRWINYLRPDLK----------------- 66 (430)
Q Consensus 9 kp~lkKg~WT~EEDe~Ll~lV~kyG~~n-----W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~lk----------------- 66 (430)
.+.++|++||+|||++|+++|++||.+. |.+||++|+ |||+.|||.||+.+|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 3567899999999999999999998643 999999999 99999999999999999886
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-h--------------------------------CC--------------
Q 014135 67 ------------RGAFSVQEESLIVELHAV-L--------------------------------GN-------------- 87 (430)
Q Consensus 67 ------------kg~WT~EED~~Llelv~k-~--------------------------------G~-------------- 87 (430)
+..||.+||-.|...+.+ | |.
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 889999999999999887 2 11
Q ss_pred -----------chhHHhhhCCCCCHHHHHHHHhhhhhHH
Q 014135 88 -----------RWSQIAAQLPGRTDDEIKNLWNSSIKKK 115 (430)
Q Consensus 88 -----------~Ws~IA~~LpgRT~~QcR~RW~~~Lkk~ 115 (430)
.|.+||+.+|+||..++|+||+..|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999999988665
No 15
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3e-17 Score=129.45 Aligned_cols=65 Identities=18% Similarity=0.359 Sum_probs=62.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhHHhhhCCCCCHHHHHHHHhhhhhHHHHhCCCCCCCC
Q 014135 62 RPDLKRGAFSVQEESLIVELHAVLG-NRWSQIAAQLPGRTDDEIKNLWNSSIKKKLRQRGIDPNTH 126 (430)
Q Consensus 62 ~p~lkkg~WT~EED~~Llelv~k~G-~~Ws~IA~~LpgRT~~QcR~RW~~~Lkk~lkk~~~~~~ed 126 (430)
.|.+++++||+|||++|+++|.+|| ++|..||..|++||+.|||+||+.+|++.+++.+|+++||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4688999999999999999999999 7999999999999999999999999999999999999987
No 16
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.65 E-value=8.4e-17 Score=128.84 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=47.2
Q ss_pred ccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhHHhhhCCCCCHHHHHHHHhhhh
Q 014135 54 RLRWINYLRPDLKRGAFSVQEESLIVELHAVLGNRWSQIAAQLPGRTDDEIKNLWNSSI 112 (430)
Q Consensus 54 r~Rw~n~L~p~lkkg~WT~EED~~Llelv~k~G~~Ws~IA~~LpgRT~~QcR~RW~~~L 112 (430)
--||.++|+|++++++||+|||++|+++|.+||++|+.||+.| |||++|||+||+.+.
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999 999999999998653
No 17
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.64 E-value=2.8e-17 Score=143.22 Aligned_cols=83 Identities=20% Similarity=0.332 Sum_probs=78.2
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccc----CccCCccccccccccccC-----CCCCCC-CCCHHHHHH
Q 014135 8 YKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLA----GLQRCGKSCRLRWINYLR-----PDLKRG-AFSVQEESL 77 (430)
Q Consensus 8 ~kp~lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l----~~~Rt~~QCr~Rw~n~L~-----p~lkkg-~WT~EED~~ 77 (430)
++++.++++||+|||+.|+++|++||.++|..|++.+ + +||+.+|++||+++++ |.++++ +|+++|+.+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 5678899999999999999999999998999999974 5 8999999999999998 999999 999999999
Q ss_pred HHHHHHHhCCchhH
Q 014135 78 IVELHAVLGNRWSQ 91 (430)
Q Consensus 78 Llelv~k~G~~Ws~ 91 (430)
|++++..+|++|.+
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999977
No 18
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.6e-16 Score=122.66 Aligned_cols=61 Identities=20% Similarity=0.303 Sum_probs=58.0
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCchhHHhhhCCCCCHHHHHHHHhhhhhHHHHhCCC
Q 014135 60 YLRPDLKRGAFSVQEESLIVELHAVLGNRWSQIAAQLPGRTDDEIKNLWNSSIKKKLRQRGI 121 (430)
Q Consensus 60 ~L~p~lkkg~WT~EED~~Llelv~k~G~~Ws~IA~~LpgRT~~QcR~RW~~~Lkk~lkk~~~ 121 (430)
+|+|.+++++||+|||++|+++|.+||.+|..||+ |+|||+.|||+||+.+|++.+++..-
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~ 62 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG 62 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence 68999999999999999999999999999999999 88999999999999999999987653
No 19
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=7.8e-17 Score=123.32 Aligned_cols=57 Identities=25% Similarity=0.486 Sum_probs=54.2
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCccCCccccccccccccCCCCC
Q 014135 9 KQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLK 66 (430)
Q Consensus 9 kp~lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr~Rw~n~L~p~lk 66 (430)
.|.+++++||+|||++|+++|.+||.++|.+||+.|+ +|++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 5789999999999999999999999878999999998 99999999999999999875
No 20
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.63 E-value=3.8e-16 Score=123.91 Aligned_cols=66 Identities=23% Similarity=0.345 Sum_probs=60.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCchhHHhhhCCCCCHHHHHHHHhhhhhHHHHhCCCCCCCCC
Q 014135 61 LRPDLKRGAFSVQEESLIVELHAVLGNRWSQIAAQLPGRTDDEIKNLWNSSIKKKLRQRGIDPNTHK 127 (430)
Q Consensus 61 L~p~lkkg~WT~EED~~Llelv~k~G~~Ws~IA~~LpgRT~~QcR~RW~~~Lkk~lkk~~~~~~edk 127 (430)
++|.+++++||+|||++|+++|.+||.+|..||+.|+|||+.|||+||+.++++.++. ++++.+..
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~s 68 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETPN 68 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCSC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCccc
Confidence 5789999999999999999999999999999999999999999999999999998877 77666543
No 21
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.62 E-value=1.1e-16 Score=119.12 Aligned_cols=52 Identities=44% Similarity=0.840 Sum_probs=49.6
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCCCccccccccCccCCccccccccccccCCC
Q 014135 12 LRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPD 64 (430)
Q Consensus 12 lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ 64 (430)
+++++||+|||++|+++|.+||.++|.+||+.|+ +|++.||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5789999999999999999999888999999998 999999999999999984
No 22
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.61 E-value=2e-16 Score=138.01 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=73.1
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccc----CccCCcccccccccccc-----CCCCCCCCCCHHH-HHHH
Q 014135 9 KQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLA----GLQRCGKSCRLRWINYL-----RPDLKRGAFSVQE-ESLI 78 (430)
Q Consensus 9 kp~lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l----~~~Rt~~QCr~Rw~n~L-----~p~lkkg~WT~EE-D~~L 78 (430)
+.+.++++||+|||+.|+++|++||.++|..|++.+ . +|++.||++||++++ +|.++++.|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 466789999999999999999999999999999864 4 899999999999999 8999999999999 8999
Q ss_pred HHHHHHhCCc
Q 014135 79 VELHAVLGNR 88 (430)
Q Consensus 79 lelv~k~G~~ 88 (430)
++++..+|++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999964
No 23
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.59 E-value=1.9e-16 Score=117.70 Aligned_cols=52 Identities=33% Similarity=0.696 Sum_probs=48.2
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCCCccccccccCccCCccccccccccccCCC
Q 014135 12 LRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPD 64 (430)
Q Consensus 12 lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ 64 (430)
+++++||+|||++|+++|.+||.++|.+||+.|+ +|++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5789999999999999999999878999999998 999999999999999985
No 24
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=8.4e-16 Score=117.55 Aligned_cols=55 Identities=18% Similarity=0.386 Sum_probs=52.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhHHhhhCCCCCHHHHHHHHhhhhhHHH
Q 014135 62 RPDLKRGAFSVQEESLIVELHAVLG-NRWSQIAAQLPGRTDDEIKNLWNSSIKKKL 116 (430)
Q Consensus 62 ~p~lkkg~WT~EED~~Llelv~k~G-~~Ws~IA~~LpgRT~~QcR~RW~~~Lkk~l 116 (430)
+|.+++++||+|||++|+++|.+|| ++|..||+.|++||+.|||+||+.+|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5789999999999999999999999 699999999999999999999999998764
No 25
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.57 E-value=4.8e-16 Score=122.28 Aligned_cols=64 Identities=22% Similarity=0.325 Sum_probs=59.0
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCc-cCCccccccccccccCCCCCCCCCC
Q 014135 8 YKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGL-QRCGKSCRLRWINYLRPDLKRGAFS 71 (430)
Q Consensus 8 ~kp~lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~-~Rt~~QCr~Rw~n~L~p~lkkg~WT 71 (430)
.+++.++++||+|||++|+++|++||.++|..||..|+. +|++.||++||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 467889999999999999999999998899999999976 8999999999999999999987653
No 26
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.56 E-value=3.2e-15 Score=111.09 Aligned_cols=50 Identities=26% Similarity=0.508 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chhHHhhhCCCCCHHHHHHHHhhhhhH
Q 014135 65 LKRGAFSVQEESLIVELHAVLGN-RWSQIAAQLPGRTDDEIKNLWNSSIKK 114 (430)
Q Consensus 65 lkkg~WT~EED~~Llelv~k~G~-~Ws~IA~~LpgRT~~QcR~RW~~~Lkk 114 (430)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||+.+|+|
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999997 999999999999999999999999875
No 27
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.55 E-value=4.8e-15 Score=110.24 Aligned_cols=50 Identities=28% Similarity=0.643 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chhHHhhhCCCCCHHHHHHHHhhhhhH
Q 014135 65 LKRGAFSVQEESLIVELHAVLGN-RWSQIAAQLPGRTDDEIKNLWNSSIKK 114 (430)
Q Consensus 65 lkkg~WT~EED~~Llelv~k~G~-~Ws~IA~~LpgRT~~QcR~RW~~~Lkk 114 (430)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||..+|+|
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999996 699999999999999999999999875
No 28
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.54 E-value=6.5e-15 Score=115.83 Aligned_cols=61 Identities=25% Similarity=0.297 Sum_probs=55.9
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhC-CchhHHhhhCC--CCCHHHHHHHHhhhhhHHHHhCCC
Q 014135 61 LRPDLKRGAFSVQEESLIVELHAVLG-NRWSQIAAQLP--GRTDDEIKNLWNSSIKKKLRQRGI 121 (430)
Q Consensus 61 L~p~lkkg~WT~EED~~Llelv~k~G-~~Ws~IA~~Lp--gRT~~QcR~RW~~~Lkk~lkk~~~ 121 (430)
..+..++++||+|||++|+++|.+|| ++|..||..|+ |||+.|||+||+.+|++.+.+...
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~ 67 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS 67 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 45677899999999999999999999 69999999999 999999999999999998877654
No 29
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=2.7e-15 Score=115.08 Aligned_cols=55 Identities=18% Similarity=0.467 Sum_probs=51.5
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCccCCccccccccccccCCC
Q 014135 9 KQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPD 64 (430)
Q Consensus 9 kp~lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ 64 (430)
.+.+.+++||+|||++|+++|++||.++|.+||+.|+ +|++.||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 3678999999999999999999999889999999999 999999999999999764
No 30
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.52 E-value=2e-15 Score=117.71 Aligned_cols=57 Identities=25% Similarity=0.422 Sum_probs=49.2
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCCCccccccccC-ccCCccccccccccccCCCCC
Q 014135 10 QKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAG-LQRCGKSCRLRWINYLRPDLK 66 (430)
Q Consensus 10 p~lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~-~~Rt~~QCr~Rw~n~L~p~lk 66 (430)
...+|++||+|||++|+++|++||.++|.+||+.++ .+|++.||++||.++++|.++
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 446789999999999999999999989999999754 279999999999999988763
No 31
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=8.5e-16 Score=119.77 Aligned_cols=59 Identities=24% Similarity=0.328 Sum_probs=54.4
Q ss_pred cccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCccCCccccccccccccCCCCCCC
Q 014135 7 CYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 68 (430)
Q Consensus 7 ~~kp~lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr~Rw~n~L~p~lkkg 68 (430)
+|+|.+++++||+|||++|+++|+.||. +|.+||+ ++ +|++.||++||.++|+|.++++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence 6899999999999999999999999997 8999999 65 6999999999999998876654
No 32
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.51 E-value=1.9e-14 Score=107.62 Aligned_cols=49 Identities=27% Similarity=0.381 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CchhHHhhhCC--CCCHHHHHHHHhhhhhH
Q 014135 66 KRGAFSVQEESLIVELHAVLG-NRWSQIAAQLP--GRTDDEIKNLWNSSIKK 114 (430)
Q Consensus 66 kkg~WT~EED~~Llelv~k~G-~~Ws~IA~~Lp--gRT~~QcR~RW~~~Lkk 114 (430)
++++||+|||++|+++|.+|| ++|..||..|+ |||+.|||+||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 578999999999999999999 69999999999 99999999999998864
No 33
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=1.6e-14 Score=110.85 Aligned_cols=53 Identities=19% Similarity=0.299 Sum_probs=49.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhHHhhhCCCCCHHHHHHHHhhhhhH
Q 014135 62 RPDLKRGAFSVQEESLIVELHAVLG-NRWSQIAAQLPGRTDDEIKNLWNSSIKK 114 (430)
Q Consensus 62 ~p~lkkg~WT~EED~~Llelv~k~G-~~Ws~IA~~LpgRT~~QcR~RW~~~Lkk 114 (430)
.+.+.+++||+|||++|+++|.+|| ++|..||+.|++||+.|||+||..+|.+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 3678999999999999999999999 7999999999999999999999988754
No 34
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.48 E-value=9e-15 Score=117.05 Aligned_cols=62 Identities=23% Similarity=0.333 Sum_probs=48.1
Q ss_pred CCCcccccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCccCCccccccccccccCCCCCC
Q 014135 2 GRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKR 67 (430)
Q Consensus 2 gR~~~~~kp~lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr~Rw~n~L~p~lkk 67 (430)
+||..+|+|++++++||+|||++|+++|.+||.+ |.+||+.| +|++.||+.||.. |....+.
T Consensus 11 ~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l--gRt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 11 RENLYFQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL--GRSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp --------CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred cceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence 5899999999999999999999999999999975 99999999 6999999999985 5444443
No 35
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.47 E-value=3.4e-14 Score=110.74 Aligned_cols=52 Identities=23% Similarity=0.447 Sum_probs=47.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CchhHHhhhCC--CCCHHHHHHHHhhhhhHHH
Q 014135 65 LKRGAFSVQEESLIVELHAVLG-NRWSQIAAQLP--GRTDDEIKNLWNSSIKKKL 116 (430)
Q Consensus 65 lkkg~WT~EED~~Llelv~k~G-~~Ws~IA~~Lp--gRT~~QcR~RW~~~Lkk~l 116 (430)
.++++||+|||++|+++|.+|| ++|..||+.++ +||+.|||+||++++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4788999999999999999999 68999999875 9999999999999988654
No 36
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3.6e-14 Score=113.09 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=54.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CchhHHhhhCCCCCHHHHHHHHhhhhhHHHHhCC
Q 014135 62 RPDLKRGAFSVQEESLIVELHAVLG------NRWSQIAAQLPGRTDDEIKNLWNSSIKKKLRQRG 120 (430)
Q Consensus 62 ~p~lkkg~WT~EED~~Llelv~k~G------~~Ws~IA~~LpgRT~~QcR~RW~~~Lkk~lkk~~ 120 (430)
+|.+.+++||+|||++|+++|.+|| .+|..||+.|++||+.|||+||+++|.+.++.+-
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 5788999999999999999999999 6899999999999999999999999988776543
No 37
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.46 E-value=1.3e-14 Score=110.78 Aligned_cols=52 Identities=19% Similarity=0.437 Sum_probs=48.0
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCccCCcccccccccccc
Q 014135 10 QKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 (430)
Q Consensus 10 p~lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr~Rw~n~L 61 (430)
..+.+++||+|||++|+++|++||.++|.+||+.|+.+|++.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4567899999999999999999998899999999987899999999999875
No 38
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=6.9e-15 Score=117.22 Aligned_cols=60 Identities=23% Similarity=0.336 Sum_probs=55.4
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHhCC-----CCccccccccCccCCccccccccccccCCCCCCCC
Q 014135 9 KQKLRKGLWSPEEDEKLLNYITKHGH-----GCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGA 69 (430)
Q Consensus 9 kp~lkKg~WT~EEDe~Ll~lV~kyG~-----~nW~~IA~~l~~~Rt~~QCr~Rw~n~L~p~lkkg~ 69 (430)
+|.+.+++||+|||++|+++|.+||. .+|.+||++|+ +|++.||++||+++|.+.++.|.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 68899999999999999999999996 67999999999 99999999999999988776654
No 39
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.44 E-value=1e-13 Score=105.78 Aligned_cols=50 Identities=22% Similarity=0.418 Sum_probs=46.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CchhHHhhhCC-CCCHHHHHHHHhhhh
Q 014135 63 PDLKRGAFSVQEESLIVELHAVLG-NRWSQIAAQLP-GRTDDEIKNLWNSSI 112 (430)
Q Consensus 63 p~lkkg~WT~EED~~Llelv~k~G-~~Ws~IA~~Lp-gRT~~QcR~RW~~~L 112 (430)
..+.+++||+|||++|+++|.+|| ++|..||+.|+ +||+.|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456788999999999999999999 89999999999 999999999998765
No 40
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.44 E-value=1.7e-14 Score=107.89 Aligned_cols=50 Identities=26% Similarity=0.450 Sum_probs=46.4
Q ss_pred CccCCCHHHHHHHHHHHHHhCCCCccccccccCc-cCCccccccccccccC
Q 014135 13 RKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGL-QRCGKSCRLRWINYLR 62 (430)
Q Consensus 13 kKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~-~Rt~~QCr~Rw~n~L~ 62 (430)
++++||+|||++|+++|.+||.++|..||..++. +|++.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5799999999999999999998899999999875 6999999999999874
No 41
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.39 E-value=3.3e-14 Score=112.71 Aligned_cols=58 Identities=22% Similarity=0.320 Sum_probs=53.6
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCccCCccccccccccccCCCCCC
Q 014135 8 YKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKR 67 (430)
Q Consensus 8 ~kp~lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr~Rw~n~L~p~lkk 67 (430)
..|.+++++||+|||++|+++|.+||. +|..||++|+ +|++.||+.||..+|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999997 8999999999 999999999999998766554
No 42
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.38 E-value=1e-13 Score=120.78 Aligned_cols=82 Identities=23% Similarity=0.321 Sum_probs=69.5
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCC-chhHHhhh----CCCCCHHHHHHHHhhhhh-----HHHHhC-CCCCCCCCcc
Q 014135 61 LRPDLKRGAFSVQEESLIVELHAVLGN-RWSQIAAQ----LPGRTDDEIKNLWNSSIK-----KKLRQR-GIDPNTHKPL 129 (430)
Q Consensus 61 L~p~lkkg~WT~EED~~Llelv~k~G~-~Ws~IA~~----LpgRT~~QcR~RW~~~Lk-----k~lkk~-~~~~~edk~L 129 (430)
+.+..++++||.|||+.|+++|.+||. +|+.|++. |++||+.+||+||+++++ +.++++ .+..+++..|
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 456778999999999999999999995 99999998 489999999999999998 555554 4444455678
Q ss_pred hhhhhhhcchhhH
Q 014135 130 SEVENDKEQQLTV 142 (430)
Q Consensus 130 ~e~~~~~g~~w~~ 142 (430)
.+++...|++|..
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 8999999998876
No 43
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.05 E-value=6.3e-14 Score=115.77 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=52.8
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCchhHHhhhCCCCCHHHHHHHHhhhhhHH
Q 014135 60 YLRPDLKRGAFSVQEESLIVELHAVLGNRWSQIAAQLPGRTDDEIKNLWNSSIKKK 115 (430)
Q Consensus 60 ~L~p~lkkg~WT~EED~~Llelv~k~G~~Ws~IA~~LpgRT~~QcR~RW~~~Lkk~ 115 (430)
.++|.+++++||+|||++|+++|.+||.+|..||..|+|||+.|||+||+.++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 46788999999999999999999999999999999999999999999999988764
No 44
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.33 E-value=4.8e-13 Score=113.94 Aligned_cols=80 Identities=24% Similarity=0.265 Sum_probs=67.6
Q ss_pred cccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccC---ccCCcccccccccccc-----CCCCCCCCCCHHHHHH-
Q 014135 7 CYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAG---LQRCGKSCRLRWINYL-----RPDLKRGAFSVQEESL- 77 (430)
Q Consensus 7 ~~kp~lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~---~~Rt~~QCr~Rw~n~L-----~p~lkkg~WT~EED~~- 77 (430)
-.+++.++++||+|||+.|+++|++||.++|..|++.+. .+||+.+|++||++++ +|.++++.-+++|-..
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 346788999999999999999999999989999999652 3899999999999998 6899999888777665
Q ss_pred HHHHHHHhC
Q 014135 78 IVELHAVLG 86 (430)
Q Consensus 78 Llelv~k~G 86 (430)
+++|...+|
T Consensus 86 v~~~~~~~~ 94 (105)
T 2aje_A 86 VLNAHGYWT 94 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 788877755
No 45
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.31 E-value=7.6e-13 Score=108.31 Aligned_cols=69 Identities=23% Similarity=0.370 Sum_probs=60.4
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCccccccc----cCccCCcccccccccccc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 014135 15 GLWSPEEDEKLLNYITKHGHGCWSSVPKL----AGLQRCGKSCRLRWINYL-----RPDLKRG-AFSVQEESLIVELHAV 84 (430)
Q Consensus 15 g~WT~EEDe~Ll~lV~kyG~~nW~~IA~~----l~~~Rt~~QCr~Rw~n~L-----~p~lkkg-~WT~EED~~Llelv~k 84 (430)
++||+|||++|+++|++||.++|..|++. ++ +||+.+|++||++++ +|.++++ +..++.+.+++.+...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999899999985 66 899999999999988 6766665 6777888889888765
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.30 E-value=5.9e-13 Score=107.91 Aligned_cols=53 Identities=21% Similarity=0.358 Sum_probs=49.3
Q ss_pred ccccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCccCCccccccccccc
Q 014135 6 CCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 60 (430)
Q Consensus 6 ~~~kp~lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr~Rw~n~ 60 (430)
...+....+++||+|||++|+++|++|| ++|.+||++|+ +|++.||+.||.++
T Consensus 10 ~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 10 AKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred CCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 4566777899999999999999999999 78999999999 99999999999998
No 47
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.29 E-value=7.6e-13 Score=126.72 Aligned_cols=78 Identities=17% Similarity=0.352 Sum_probs=66.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCc------hhHHhhhCCCCCHHHHHHHHhhhhhHHHHhCCCCCCCCCcchhhhhhh
Q 014135 63 PDLKRGAFSVQEESLIVELHAVLGNR------WSQIAAQLPGRTDDEIKNLWNSSIKKKLRQRGIDPNTHKPLSEVENDK 136 (430)
Q Consensus 63 p~lkkg~WT~EED~~Llelv~k~G~~------Ws~IA~~LpgRT~~QcR~RW~~~Lkk~lkk~~~~~~edk~L~e~~~~~ 136 (430)
+.+++++||+|||++|+++|.++|++ |..||+.|||||++|||+||+.+|++.+... |...++..|+....
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li~d~~-- 80 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLVRDDD-- 80 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBCBCTT--
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhhhccC--
Confidence 35788999999999999999999975 9999999999999999999999999998844 88888888776665
Q ss_pred cchhhHhh
Q 014135 137 EQQLTVIN 144 (430)
Q Consensus 137 g~~w~~Ia 144 (430)
|. |..|+
T Consensus 81 Gn-~ikis 87 (246)
T 1ign_A 81 GN-LIKTK 87 (246)
T ss_dssp SC-BCEES
T ss_pred CC-ceeee
Confidence 66 88888
No 48
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.28 E-value=1.3e-12 Score=114.05 Aligned_cols=77 Identities=22% Similarity=0.342 Sum_probs=64.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-chhHHhhhC----CCCCHHHHHHHHhhhhh-----HHHHhCCCCCCC-CCcchh
Q 014135 63 PDLKRGAFSVQEESLIVELHAVLGN-RWSQIAAQL----PGRTDDEIKNLWNSSIK-----KKLRQRGIDPNT-HKPLSE 131 (430)
Q Consensus 63 p~lkkg~WT~EED~~Llelv~k~G~-~Ws~IA~~L----pgRT~~QcR~RW~~~Lk-----k~lkk~~~~~~e-dk~L~e 131 (430)
...++++||.|||+.|+++|.+||. +|..|++.+ ++||+.+||+||+++++ +.++++.+.+++ +..+.+
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~ 106 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLA 106 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHH
Confidence 3457889999999999999999995 999999974 89999999999999994 556666666666 566778
Q ss_pred hhhhhcch
Q 014135 132 VENDKEQQ 139 (430)
Q Consensus 132 ~~~~~g~~ 139 (430)
++...|++
T Consensus 107 ~h~~~g~~ 114 (122)
T 2roh_A 107 AQAYWSVD 114 (122)
T ss_dssp HHHHHHSS
T ss_pred HHHHHhhH
Confidence 88888764
No 49
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.28 E-value=3.2e-12 Score=102.22 Aligned_cols=51 Identities=10% Similarity=0.254 Sum_probs=47.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CchhHHhhhCCCCCHHHHHHHHhhhhh
Q 014135 63 PDLKRGAFSVQEESLIVELHAVLG----NRWSQIAAQLPGRTDDEIKNLWNSSIK 113 (430)
Q Consensus 63 p~lkkg~WT~EED~~Llelv~k~G----~~Ws~IA~~LpgRT~~QcR~RW~~~Lk 113 (430)
+...+++||.+||.+|++++.+|| .+|.+||+.|||||+.|||+||..++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 467889999999999999999999 689999999999999999999998764
No 50
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.26 E-value=4e-12 Score=103.03 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=45.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCchhHHhhhCCCCCHHHHHHHHhhh
Q 014135 64 DLKRGAFSVQEESLIVELHAVLGNRWSQIAAQLPGRTDDEIKNLWNSS 111 (430)
Q Consensus 64 ~lkkg~WT~EED~~Llelv~k~G~~Ws~IA~~LpgRT~~QcR~RW~~~ 111 (430)
...+++||+|||++|+++|.+||.+|..||+.|++||+.||+.||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 457889999999999999999999999999999999999999999876
No 51
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.80 E-value=2.2e-12 Score=106.53 Aligned_cols=54 Identities=22% Similarity=0.488 Sum_probs=50.7
Q ss_pred cccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCccCCccccccccccccC
Q 014135 7 CYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLR 62 (430)
Q Consensus 7 ~~kp~lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr~Rw~n~L~ 62 (430)
...|.+.+|+||+|||++|+++|.+||. +|..||..|+ +|++.||+.||.++|.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKK 62 (89)
Confidence 4678899999999999999999999997 7999999999 9999999999999875
No 52
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.16 E-value=2.2e-11 Score=103.73 Aligned_cols=52 Identities=27% Similarity=0.452 Sum_probs=47.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-chhHHhhhC----CCCCHHHHHHHHhhhhhH
Q 014135 63 PDLKRGAFSVQEESLIVELHAVLGN-RWSQIAAQL----PGRTDDEIKNLWNSSIKK 114 (430)
Q Consensus 63 p~lkkg~WT~EED~~Llelv~k~G~-~Ws~IA~~L----pgRT~~QcR~RW~~~Lkk 114 (430)
+..++++||.|||+.|+++|.+||. +|..|++.+ ++||+.+||+||+++++.
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 4568899999999999999999995 999999975 899999999999999963
No 53
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.16 E-value=4.4e-12 Score=101.40 Aligned_cols=56 Identities=11% Similarity=0.325 Sum_probs=50.0
Q ss_pred ccccCCCCccCCCHHHHHHHHHHHHHhCC---CCccccccccCccCCccccccccccccC
Q 014135 6 CCYKQKLRKGLWSPEEDEKLLNYITKHGH---GCWSSVPKLAGLQRCGKSCRLRWINYLR 62 (430)
Q Consensus 6 ~~~kp~lkKg~WT~EEDe~Ll~lV~kyG~---~nW~~IA~~l~~~Rt~~QCr~Rw~n~L~ 62 (430)
..-++...+++||+|||++|+++|.+||. ..|.+||++|+ ||++.||+.||..++.
T Consensus 10 ~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 10 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34567888999999999999999999993 46999999999 9999999999998764
No 54
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.14 E-value=5.3e-11 Score=97.38 Aligned_cols=48 Identities=29% Similarity=0.529 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC-chhHHhhh----CCCCCHHHHHHHHhhhhhHH
Q 014135 68 GAFSVQEESLIVELHAVLGN-RWSQIAAQ----LPGRTDDEIKNLWNSSIKKK 115 (430)
Q Consensus 68 g~WT~EED~~Llelv~k~G~-~Ws~IA~~----LpgRT~~QcR~RW~~~Lkk~ 115 (430)
++||+|||+.|+++|.+||. +|+.|++. |++||+.+||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999999995 99999996 89999999999999999754
No 55
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.10 E-value=9.3e-11 Score=90.83 Aligned_cols=50 Identities=20% Similarity=0.356 Sum_probs=45.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCchhHHh---hhCCCCCHHHHHHHHhhhhhH
Q 014135 65 LKRGAFSVQEESLIVELHAVLGNRWSQIA---AQLPGRTDDEIKNLWNSSIKK 114 (430)
Q Consensus 65 lkkg~WT~EED~~Llelv~k~G~~Ws~IA---~~LpgRT~~QcR~RW~~~Lkk 114 (430)
-.+.+||+|||+.|+++|++||.+|..|+ ..+++||+..+++||+.+.+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 36789999999999999999999999999 567999999999999998764
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.08 E-value=1.4e-10 Score=96.75 Aligned_cols=58 Identities=24% Similarity=0.444 Sum_probs=48.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CchhHHhhhCCCCCHHHHHHHHhhhhhHH-HHhCCCCC
Q 014135 66 KRGAFSVQEESLIVELHAVLG----NRWSQIAAQLPGRTDDEIKNLWNSSIKKK-LRQRGIDP 123 (430)
Q Consensus 66 kkg~WT~EED~~Llelv~k~G----~~Ws~IA~~LpgRT~~QcR~RW~~~Lkk~-lkk~~~~~ 123 (430)
.+++||.|||++|++++.+|| .+|.+||+.|||||+++|++||+.++... ....+..|
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp 69 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVP 69 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 467999999999999999996 67999999999999999999999988765 33444433
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.87 E-value=2.8e-09 Score=88.84 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=61.3
Q ss_pred CccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhHHhhhC-----CCCCHHHHHHHHhhhhhHHHHhCC
Q 014135 49 CGKSCRLRWINYLRPDLKRGAFSVQEESLIVELHAVLGNRWSQIAAQL-----PGRTDDEIKNLWNSSIKKKLRQRG 120 (430)
Q Consensus 49 t~~QCr~Rw~n~L~p~lkkg~WT~EED~~Llelv~k~G~~Ws~IA~~L-----pgRT~~QcR~RW~~~Lkk~lkk~~ 120 (430)
-+.=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+..+ ++||..++|+||..+.++.++.++
T Consensus 16 i~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 16 VPVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 345678999999976 89999999999999999999999999999 589999999999999988887764
No 58
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.83 E-value=4.6e-10 Score=93.65 Aligned_cols=48 Identities=13% Similarity=0.284 Sum_probs=43.0
Q ss_pred CccCCCHHHHHHHHHHHHHhCC---CCccccccccCccCCcccccccccccc
Q 014135 13 RKGLWSPEEDEKLLNYITKHGH---GCWSSVPKLAGLQRCGKSCRLRWINYL 61 (430)
Q Consensus 13 kKg~WT~EEDe~Ll~lV~kyG~---~nW~~IA~~l~~~Rt~~QCr~Rw~n~L 61 (430)
.++.||+|||++|++++.+||. ..|.+||+.|+ ||++.||+.||..++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4678999999999999999973 46999999999 999999999999864
No 59
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=7e-09 Score=79.68 Aligned_cols=47 Identities=9% Similarity=0.073 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhHHhhhCCCCCHHHHHHHHhhhh
Q 014135 66 KRGAFSVQEESLIVELHAVLGNRWSQIAAQLPGRTDDEIKNLWNSSI 112 (430)
Q Consensus 66 kkg~WT~EED~~Llelv~k~G~~Ws~IA~~LpgRT~~QcR~RW~~~L 112 (430)
..++||+||++++++++.+||.+|..||..||+||..+|+.+|....
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45799999999999999999999999999999999999999997543
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.72 E-value=1.1e-08 Score=81.40 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=48.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CchhHHhhhCCCCCHHHHHHHHhhhhhHHHHhCCC
Q 014135 64 DLKRGAFSVQEESLIVELHAVLG----NRWSQIAAQLPGRTDDEIKNLWNSSIKKKLRQRGI 121 (430)
Q Consensus 64 ~lkkg~WT~EED~~Llelv~k~G----~~Ws~IA~~LpgRT~~QcR~RW~~~Lkk~lkk~~~ 121 (430)
..+.+.||.|||++|..++.+|+ .+|.+||+.| |||..+|+.||+.+........|.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~~~~G~ 65 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCSPGM 65 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCCCCSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcCccCCC
Confidence 45678999999999999999997 5799999998 999999999999887664333333
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=8.1e-09 Score=79.35 Aligned_cols=53 Identities=11% Similarity=0.212 Sum_probs=46.6
Q ss_pred cccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCccCCcccccccccccc
Q 014135 7 CYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 (430)
Q Consensus 7 ~~kp~lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr~Rw~n~L 61 (430)
..+.+...++||+||++++++++.+|| ++|..||.+|+ +|+..||+.+|....
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 345566778999999999999999999 58999999999 999999999997643
No 62
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.63 E-value=7.7e-09 Score=80.09 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=43.8
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCCCccccc---cccCccCCccccccccccccC
Q 014135 12 LRKGLWSPEEDEKLLNYITKHGHGCWSSVP---KLAGLQRCGKSCRLRWINYLR 62 (430)
Q Consensus 12 lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA---~~l~~~Rt~~QCr~Rw~n~L~ 62 (430)
..+.+||+|||+.|+++|++||. +|..|+ .++. +|+...+++||++...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 36789999999999999999997 899999 4665 8999999999998764
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.53 E-value=6e-08 Score=92.30 Aligned_cols=49 Identities=14% Similarity=0.278 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhHHhhhCCCCCHHHHHHHHhhhhhH
Q 014135 66 KRGAFSVQEESLIVELHAVLGNRWSQIAAQLPGRTDDEIKNLWNSSIKK 114 (430)
Q Consensus 66 kkg~WT~EED~~Llelv~k~G~~Ws~IA~~LpgRT~~QcR~RW~~~Lkk 114 (430)
..++||+||++++++++.+||.+|..||+.|++||..|||++|+.+.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999999999999877654
No 64
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.39 E-value=1.8e-07 Score=97.71 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhHHhhhCCCCCHHHHHHHHhhhh
Q 014135 68 GAFSVQEESLIVELHAVLGNRWSQIAAQLPGRTDDEIKNLWNSSI 112 (430)
Q Consensus 68 g~WT~EED~~Llelv~k~G~~Ws~IA~~LpgRT~~QcR~RW~~~L 112 (430)
.+||.||-+++++++.+||.+|..||+.++.||..|||+.|..+.
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999986543
No 65
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.38 E-value=3.2e-07 Score=73.29 Aligned_cols=48 Identities=19% Similarity=0.265 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CchhHHhhhCCCCCHHHHHHHHhhhhhH
Q 014135 67 RGAFSVQEESLIVELHAVLG----NRWSQIAAQLPGRTDDEIKNLWNSSIKK 114 (430)
Q Consensus 67 kg~WT~EED~~Llelv~k~G----~~Ws~IA~~LpgRT~~QcR~RW~~~Lkk 114 (430)
...||.+|+++|.+++..|+ .+|..||..++|||..+|+.||..+++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 45899999999999999998 3699999999999999999999887543
No 66
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.37 E-value=6.2e-08 Score=77.14 Aligned_cols=50 Identities=16% Similarity=0.245 Sum_probs=43.4
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCC---CCccccccccCccCCccccccccccccC
Q 014135 11 KLRKGLWSPEEDEKLLNYITKHGH---GCWSSVPKLAGLQRCGKSCRLRWINYLR 62 (430)
Q Consensus 11 ~lkKg~WT~EEDe~Ll~lV~kyG~---~nW~~IA~~l~~~Rt~~QCr~Rw~n~L~ 62 (430)
....+.||.|||++|.+++.+|+. ..|.+||..+| |+..+|+.||..+.+
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 345788999999999999999984 35999999985 999999999987654
No 67
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.25 E-value=2.6e-07 Score=87.96 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=47.4
Q ss_pred cccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCccCCccccccccccccC
Q 014135 7 CYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLR 62 (430)
Q Consensus 7 ~~kp~lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr~Rw~n~L~ 62 (430)
.........+||+||++++++++.+|| ++|..||+.|+ +|+..||+.+|.++..
T Consensus 126 pe~~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 126 PEVIQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344445678999999999999999999 58999999999 9999999999998763
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.25 E-value=8.8e-07 Score=67.82 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCc-hhHHhh-hCCCCCHHHHHHHHhhhhh
Q 014135 67 RGAFSVQEESLIVELHAVL--------GNR-WSQIAA-QLPGRTDDEIKNLWNSSIK 113 (430)
Q Consensus 67 kg~WT~EED~~Llelv~k~--------G~~-Ws~IA~-~LpgRT~~QcR~RW~~~Lk 113 (430)
|.+||.|||..|++.|.++ |+. |.++++ .++++|-.+||+||.+.|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 433 999999 7999999999999988764
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.23 E-value=2.3e-07 Score=74.12 Aligned_cols=48 Identities=25% Similarity=0.500 Sum_probs=43.1
Q ss_pred ccCCCHHHHHHHHHHHHHhCC---CCccccccccCccCCccccccccccccC
Q 014135 14 KGLWSPEEDEKLLNYITKHGH---GCWSSVPKLAGLQRCGKSCRLRWINYLR 62 (430)
Q Consensus 14 Kg~WT~EEDe~Ll~lV~kyG~---~nW~~IA~~l~~~Rt~~QCr~Rw~n~L~ 62 (430)
...||.+|+++|.+++..|+. +.|.+||..+| +|+..+|+.||..++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 357999999999999999975 35999999999 8999999999998754
No 70
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.12 E-value=4.9e-07 Score=69.26 Aligned_cols=48 Identities=23% Similarity=0.477 Sum_probs=42.5
Q ss_pred ccCCCHHHHHHHHHHHHHh--------CCCCcccccc-ccCccCCccccccccccccC
Q 014135 14 KGLWSPEEDEKLLNYITKH--------GHGCWSSVPK-LAGLQRCGKSCRLRWINYLR 62 (430)
Q Consensus 14 Kg~WT~EEDe~Ll~lV~ky--------G~~nW~~IA~-~l~~~Rt~~QCr~Rw~n~L~ 62 (430)
+.+||+|||+.|++.|.+| |..-|+++|+ .++ +++-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5789999999999999999 4445999999 777 9999999999998874
No 71
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.92 E-value=1.7e-05 Score=65.54 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC---chhHHhhhCCCCCHHHHHHHHhhhhhHHHHhC
Q 014135 68 GAFSVQEESLIVELHAVLGN---RWSQIAAQLPGRTDDEIKNLWNSSIKKKLRQR 119 (430)
Q Consensus 68 g~WT~EED~~Llelv~k~G~---~Ws~IA~~LpgRT~~QcR~RW~~~Lkk~lkk~ 119 (430)
-.||.|||+.|+...++-|. .|..||+.|.+|+.+||++||+.+++-.-+..
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCS
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHh
Confidence 36999999999999999995 79999999999999999999999887655443
No 72
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=2.2e-05 Score=60.63 Aligned_cols=48 Identities=15% Similarity=0.208 Sum_probs=44.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchhHHhh-hCCCCCHHHHHHHHh
Q 014135 62 RPDLKRGAFSVQEESLIVELHAVLGNRWSQIAA-QLPGRTDDEIKNLWN 109 (430)
Q Consensus 62 ~p~lkkg~WT~EED~~Llelv~k~G~~Ws~IA~-~LpgRT~~QcR~RW~ 109 (430)
.|.+....||+||-++..+++.+||.+|..|++ .|++||..+|...|.
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 367788899999999999999999999999999 589999999998875
No 73
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.86 E-value=2.7e-05 Score=77.24 Aligned_cols=102 Identities=18% Similarity=0.207 Sum_probs=80.9
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCccccccccCccCCccccc-------cccccc---------------------------
Q 014135 15 GLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCR-------LRWINY--------------------------- 60 (430)
Q Consensus 15 g~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr-------~Rw~n~--------------------------- 60 (430)
+.||..|...++.++.+||..+|..||..|+ +++...++ +||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999999999999999998 89887775 222110
Q ss_pred -------------c---CCCCCCCCCCHHHHHHHHHHHHHhCC----chhHHhh------------hCCCCCHHHHHHHH
Q 014135 61 -------------L---RPDLKRGAFSVQEESLIVELHAVLGN----RWSQIAA------------QLPGRTDDEIKNLW 108 (430)
Q Consensus 61 -------------L---~p~lkkg~WT~EED~~Llelv~k~G~----~Ws~IA~------------~LpgRT~~QcR~RW 108 (430)
| .+..+...||++||..|+-++.+||- .|..|.. .+..||+.+|..|-
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 02234568999999999999999994 6999963 34679999999999
Q ss_pred hhhhhHHHH
Q 014135 109 NSSIKKKLR 117 (430)
Q Consensus 109 ~~~Lkk~lk 117 (430)
..+++-..+
T Consensus 270 ~tLi~~iek 278 (304)
T 1ofc_X 270 NTLITLIER 278 (304)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988875433
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.79 E-value=4.9e-06 Score=66.37 Aligned_cols=43 Identities=21% Similarity=0.413 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----chhHHhhhCCCCCHHHHHHHHh
Q 014135 67 RGAFSVQEESLIVELHAVLGN----RWSQIAAQLPGRTDDEIKNLWN 109 (430)
Q Consensus 67 kg~WT~EED~~Llelv~k~G~----~Ws~IA~~LpgRT~~QcR~RW~ 109 (430)
...||.+|+++|..++.+|+. +|.+||+.|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 7999999999999999999985
No 75
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.76 E-value=4.8e-06 Score=66.43 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=39.2
Q ss_pred ccCCCHHHHHHHHHHHHHhCCC---CccccccccCccCCccccccccc
Q 014135 14 KGLWSPEEDEKLLNYITKHGHG---CWSSVPKLAGLQRCGKSCRLRWI 58 (430)
Q Consensus 14 Kg~WT~EEDe~Ll~lV~kyG~~---nW~~IA~~l~~~Rt~~QCr~Rw~ 58 (430)
...||.+|+++|..++..|+.+ .|.+||..|| ||+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 4579999999999999999754 5999999999 999999999996
No 76
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.88 E-value=5e-06 Score=65.30 Aligned_cols=45 Identities=13% Similarity=0.301 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHhCC---chhHHhhhCCCCCHHHHHHHHhhhhhH
Q 014135 69 AFSVQEESLIVELHAVLGN---RWSQIAAQLPGRTDDEIKNLWNSSIKK 114 (430)
Q Consensus 69 ~WT~EED~~Llelv~k~G~---~Ws~IA~~LpgRT~~QcR~RW~~~Lkk 114 (430)
.||.|||..|+..+++-|. .|..||..| +|+++||.+||..+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 6999999999999999996 799999999 99999999999988754
No 77
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.69 E-value=7e-05 Score=62.31 Aligned_cols=62 Identities=18% Similarity=0.264 Sum_probs=53.0
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhHHhhhCC-----CCCHHHHHHHHhhhhhHHHHhCC
Q 014135 55 LRWINYLRPDLKRGAFSVQEESLIVELHAVLGNRWSQIAAQLP-----GRTDDEIKNLWNSSIKKKLRQRG 120 (430)
Q Consensus 55 ~Rw~n~L~p~lkkg~WT~EED~~Llelv~k~G~~Ws~IA~~Lp-----gRT~~QcR~RW~~~Lkk~lkk~~ 120 (430)
+.|..+|. ...||.||...|++|+++|+-+|..|+.... .||-.++|.||..+.++.++.+.
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 45666664 3689999999999999999999999999873 79999999999999888777653
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=2.6e-05 Score=60.13 Aligned_cols=49 Identities=10% Similarity=0.142 Sum_probs=44.2
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHhCCCCcccccc-ccCccCCcccccccccc
Q 014135 9 KQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPK-LAGLQRCGKSCRLRWIN 59 (430)
Q Consensus 9 kp~lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~-~l~~~Rt~~QCr~Rw~n 59 (430)
.|.+....||+||-++..+++.+||. +|..|++ +++ +|+..+|.+-|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 47788899999999999999999995 8999998 688 9999999988764
No 79
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.51 E-value=1.4e-05 Score=66.65 Aligned_cols=54 Identities=9% Similarity=0.196 Sum_probs=45.2
Q ss_pred CCcccccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccC----ccCCcccccccccccc
Q 014135 3 RHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAG----LQRCGKSCRLRWINYL 61 (430)
Q Consensus 3 R~~~~~kp~lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~----~~Rt~~QCr~Rw~n~L 61 (430)
||..++++ ..||.||++.|++++++|+. .|..|+..+. .+|+..++++||..+.
T Consensus 23 eY~~~L~~----~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 23 EYQLYLHD----DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp HHHHHTCB----TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHcCC----CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 34455555 89999999999999999997 5999999883 2799999999998754
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.31 E-value=0.00036 Score=54.87 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhHHhh-hCCCCCHHHHHHHHh
Q 014135 67 RGAFSVQEESLIVELHAVLGNRWSQIAA-QLPGRTDDEIKNLWN 109 (430)
Q Consensus 67 kg~WT~EED~~Llelv~k~G~~Ws~IA~-~LpgRT~~QcR~RW~ 109 (430)
...||+||-.+..+++.+||.+|..|++ .|++||..+|...|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4589999999999999999999999999 589999999998886
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.30 E-value=6.9e-05 Score=78.41 Aligned_cols=48 Identities=19% Similarity=0.334 Sum_probs=43.4
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCCCccccccccCccCCcccccccccccc
Q 014135 12 LRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 (430)
Q Consensus 12 lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr~Rw~n~L 61 (430)
....+||.||-+++++++.+|| ++|..||+.++ .|+..||+..|.++-
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3467999999999999999999 58999999999 999999999987643
No 82
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.30 E-value=0.00035 Score=58.05 Aligned_cols=44 Identities=20% Similarity=0.111 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhHHhhhCCCCCHHHHHHHHhh
Q 014135 67 RGAFSVQEESLIVELHAVLGNRWSQIAAQLPGRTDDEIKNLWNS 110 (430)
Q Consensus 67 kg~WT~EED~~Llelv~k~G~~Ws~IA~~LpgRT~~QcR~RW~~ 110 (430)
...||+||.++..+++..||.+|..||..|++||..+|-..|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46899999999999999999999999999999999999988753
No 83
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.84 E-value=0.00092 Score=53.92 Aligned_cols=50 Identities=16% Similarity=0.388 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----------CchhHHhhhC----CCCCHHHHHHHHhhhhhHH
Q 014135 66 KRGAFSVQEESLIVELHAVLG----------NRWSQIAAQL----PGRTDDEIKNLWNSSIKKK 115 (430)
Q Consensus 66 kkg~WT~EED~~Llelv~k~G----------~~Ws~IA~~L----pgRT~~QcR~RW~~~Lkk~ 115 (430)
+...||.+|-..||++...+. ..|..||..| -.||+.||+.+|.++.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 356899999999999997632 1499999987 3799999999999877664
No 84
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.83 E-value=0.00037 Score=54.83 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=40.2
Q ss_pred CccCCCHHHHHHHHHHHHHhCCCCcccccc-ccCccCCcccccccccc
Q 014135 13 RKGLWSPEEDEKLLNYITKHGHGCWSSVPK-LAGLQRCGKSCRLRWIN 59 (430)
Q Consensus 13 kKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~-~l~~~Rt~~QCr~Rw~n 59 (430)
....||+||-++..+++.+||. +|..|++ .|+ +|+..+|.+-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 3467999999999999999995 8999999 588 9999999988764
No 85
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.81 E-value=0.00035 Score=57.99 Aligned_cols=44 Identities=16% Similarity=0.357 Sum_probs=40.3
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCccccccccCccCCcccccccccc
Q 014135 14 KGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWIN 59 (430)
Q Consensus 14 Kg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr~Rw~n 59 (430)
...||+||.++..+++..|| ++|..||..++ +|+..+|.+.|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHhc
Confidence 46799999999999999999 58999999999 9999999988764
No 86
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.70 E-value=0.0033 Score=58.17 Aligned_cols=46 Identities=13% Similarity=0.150 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHHHhC-CchhHHhhhC--------------CCCCHHHHHHHHhhhhh
Q 014135 68 GAFSVQEESLIVELHAVLG-NRWSQIAAQL--------------PGRTDDEIKNLWNSSIK 113 (430)
Q Consensus 68 g~WT~EED~~Llelv~k~G-~~Ws~IA~~L--------------pgRT~~QcR~RW~~~Lk 113 (430)
..||.+||..|+..|.+|| ++|..|-..- ..+++..+..|-..+|+
T Consensus 135 ~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 135 IDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 3599999999999999999 9999996521 12456678888766664
No 87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.63 E-value=0.00017 Score=58.32 Aligned_cols=50 Identities=22% Similarity=0.527 Sum_probs=39.8
Q ss_pred CCccCCCHHHHHHHHHHHHHhCC------C---Ccccccccc---CccCCcccccccccccc
Q 014135 12 LRKGLWSPEEDEKLLNYITKHGH------G---CWSSVPKLA---GLQRCGKSCRLRWINYL 61 (430)
Q Consensus 12 lkKg~WT~EEDe~Ll~lV~kyG~------~---nW~~IA~~l---~~~Rt~~QCr~Rw~n~L 61 (430)
-+...||.+|...|++++..... . -|..||..| |..|++.||+.+|.++.
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 35678999999999999976321 1 499999865 45799999999998754
No 88
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.41 E-value=0.0073 Score=61.39 Aligned_cols=104 Identities=15% Similarity=0.212 Sum_probs=78.8
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCccccccccCccCCccccc-------cccccc---------------------------
Q 014135 15 GLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCR-------LRWINY--------------------------- 60 (430)
Q Consensus 15 g~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr-------~Rw~n~--------------------------- 60 (430)
+.||..|=..++.++.+||..+-..||..|+.+++..+++ +||..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999999988999999885457776665 122111
Q ss_pred -------------c----CCC-CCCCCCCHHHHHHHHHHHHHhC----CchhHHhhh------------CCCCCHHHHHH
Q 014135 61 -------------L----RPD-LKRGAFSVQEESLIVELHAVLG----NRWSQIAAQ------------LPGRTDDEIKN 106 (430)
Q Consensus 61 -------------L----~p~-lkkg~WT~EED~~Llelv~k~G----~~Ws~IA~~------------LpgRT~~QcR~ 106 (430)
| .+. .+...||++||..|+-++.+|| +.|..|-.. +..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 011 1355799999999999999999 469999443 35699999999
Q ss_pred HHhhhhhHHHHh
Q 014135 107 LWNSSIKKKLRQ 118 (430)
Q Consensus 107 RW~~~Lkk~lkk 118 (430)
|-..+++-..+.
T Consensus 284 Rc~tLi~~IeKE 295 (374)
T 2y9y_A 284 RGNTLLQCLEKE 295 (374)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999999765443
No 89
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.25 E-value=0.0013 Score=54.38 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=43.0
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCC--CCccccccccCccCCccccccccccc
Q 014135 10 QKLRKGLWSPEEDEKLLNYITKHGH--GCWSSVPKLAGLQRCGKSCRLRWINY 60 (430)
Q Consensus 10 p~lkKg~WT~EEDe~Ll~lV~kyG~--~nW~~IA~~l~~~Rt~~QCr~Rw~n~ 60 (430)
++-+-..||.|||..|+...++-|. +.|..||+.|+ +|++.|+++||+.+
T Consensus 29 ~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL 80 (95)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred CCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 3445567999999999999999875 36999999998 99999999999763
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.14 E-value=0.00087 Score=52.68 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=41.0
Q ss_pred CccCCCHHHHHHHHHHHHHhCC--CCccccccccCccCCcccccccccccc
Q 014135 13 RKGLWSPEEDEKLLNYITKHGH--GCWSSVPKLAGLQRCGKSCRLRWINYL 61 (430)
Q Consensus 13 kKg~WT~EEDe~Ll~lV~kyG~--~nW~~IA~~l~~~Rt~~QCr~Rw~n~L 61 (430)
.-..||.|||..|+..+++-|. ..|..||..++ |++.|+.+||...+
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~Ln--ks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAKLD--KNPNQVSERFQQLM 61 (70)
Confidence 4456999999999999999886 35999999885 99999999998765
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.40 E-value=0.013 Score=48.69 Aligned_cols=49 Identities=12% Similarity=0.265 Sum_probs=41.1
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCCCccccccccC----ccCCcccccccccccc
Q 014135 12 LRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAG----LQRCGKSCRLRWINYL 61 (430)
Q Consensus 12 lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~----~~Rt~~QCr~Rw~n~L 61 (430)
|+...||.||...|.+++++|.. .|-.|+.... ..|+..+.++||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 34468999999999999999997 5999998653 2699999999998754
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.40 E-value=0.2 Score=38.86 Aligned_cols=48 Identities=10% Similarity=0.027 Sum_probs=41.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCc---hhHHhhhC--CCCCHHHHHHHHhhhh
Q 014135 65 LKRGAFSVQEESLIVELHAVLGNR---WSQIAAQL--PGRTDDEIKNLWNSSI 112 (430)
Q Consensus 65 lkkg~WT~EED~~Llelv~k~G~~---Ws~IA~~L--pgRT~~QcR~RW~~~L 112 (430)
..+-.||+|.-++.+++|.++|.. +..|-+.| +|.|..+|+.+.+.+.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 456689999999999999999954 78998887 7999999999877654
No 93
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.27 E-value=0.061 Score=49.55 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=28.5
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHhCCCCcccccc
Q 014135 9 KQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPK 42 (430)
Q Consensus 9 kp~lkKg~WT~EEDe~Ll~lV~kyG~~nW~~IA~ 42 (430)
++......||.+||..|+..|.+||.++|..|-.
T Consensus 129 ~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 129 KAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 3444455699999999999999999999999965
No 94
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.32 E-value=0.13 Score=50.13 Aligned_cols=28 Identities=43% Similarity=0.762 Sum_probs=25.8
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCcccccc
Q 014135 15 GLWSPEEDEKLLNYITKHGHGCWSSVPK 42 (430)
Q Consensus 15 g~WT~EEDe~Ll~lV~kyG~~nW~~IA~ 42 (430)
..|+.+||..|+..|.+||.++|..|-.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 3599999999999999999999999964
No 95
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=90.05 E-value=0.44 Score=47.19 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHHhC-CchhHHhhhCCCCCHHHHHHHHhhhhh
Q 014135 68 GAFSVQEESLIVELHAVLG-NRWSQIAAQLPGRTDDEIKNLWNSSIK 113 (430)
Q Consensus 68 g~WT~EED~~Llelv~k~G-~~Ws~IA~~LpgRT~~QcR~RW~~~Lk 113 (430)
+.||..|...++.++.+|| .+|..||..|+|+|..+|+..+.....
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4799999999999999999 579999999999999999766655554
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=84.13 E-value=0.44 Score=36.92 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=36.3
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCCC--ccccccccCc-cCCccccccccc
Q 014135 10 QKLRKGLWSPEEDEKLLNYITKHGHGC--WSSVPKLAGL-QRCGKSCRLRWI 58 (430)
Q Consensus 10 p~lkKg~WT~EEDe~Ll~lV~kyG~~n--W~~IA~~l~~-~Rt~~QCr~Rw~ 58 (430)
++..+..||+|..++.+++|+..|... ++.|.+.|+. +.|..+++-+.+
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQ 54 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQ 54 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHH
Confidence 355678899999999999999999431 6788777652 556666665543
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=68.27 E-value=11 Score=36.63 Aligned_cols=50 Identities=12% Similarity=0.213 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CchhHHhhh--CCCCCHHHHHHHHhhhhhHHH
Q 014135 67 RGAFSVQEESLIVELHAVLG---NRWSQIAAQ--LPGRTDDEIKNLWNSSIKKKL 116 (430)
Q Consensus 67 kg~WT~EED~~Llelv~k~G---~~Ws~IA~~--LpgRT~~QcR~RW~~~Lkk~l 116 (430)
++.||..|-..|+..+.+|| .+|..|+.. |+.|+...++.-+..++....
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c~ 57 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAAK 57 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 57899999999999999999 589999765 689999999999987776543
No 98
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=52.51 E-value=18 Score=30.37 Aligned_cols=40 Identities=13% Similarity=0.272 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCC--------chhHHhhhCCCCC----HHHHHHHHhhhhhHH
Q 014135 76 SLIVELHAVLGN--------RWSQIAAQLPGRT----DDEIKNLWNSSIKKK 115 (430)
Q Consensus 76 ~~Llelv~k~G~--------~Ws~IA~~LpgRT----~~QcR~RW~~~Lkk~ 115 (430)
-+|..+|.+.|+ .|.+|++.|.--. +..+|..|.++|.+.
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 357888888884 5999999982221 568899999888775
No 99
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=51.60 E-value=3.5 Score=35.36 Aligned_cols=57 Identities=12% Similarity=0.218 Sum_probs=38.8
Q ss_pred HHHHHHHHhCC-------CCccccccccCccCCc----cccccccccccCCCCCCCCCCHHHHHHHHHHHH
Q 014135 24 KLLNYITKHGH-------GCWSSVPKLAGLQRCG----KSCRLRWINYLRPDLKRGAFSVQEESLIVELHA 83 (430)
Q Consensus 24 ~Ll~lV~kyG~-------~nW~~IA~~l~~~Rt~----~QCr~Rw~n~L~p~lkkg~WT~EED~~Llelv~ 83 (430)
+|..+|.+.|- +.|.+||..|+...+. ...+..|.++|.|-- ..+++|-..|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 34445555542 3599999998754433 456888999887632 378889888887664
No 100
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=51.59 E-value=9.5 Score=32.03 Aligned_cols=39 Identities=15% Similarity=0.310 Sum_probs=31.1
Q ss_pred HHHHHHHHhCC--------chhHHhhhCCCCCHHHHHHHHhhhhhHH
Q 014135 77 LIVELHAVLGN--------RWSQIAAQLPGRTDDEIKNLWNSSIKKK 115 (430)
Q Consensus 77 ~Llelv~k~G~--------~Ws~IA~~LpgRT~~QcR~RW~~~Lkk~ 115 (430)
+|..+|.+.|+ .|..||+.|.--.+..+|..|..+|.+.
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 57888888884 5999999984333789999999988764
No 101
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=51.23 E-value=21 Score=29.18 Aligned_cols=40 Identities=10% Similarity=0.277 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCC--------chhHHhhhCCC-CC---HHHHHHHHhhhhhHH
Q 014135 76 SLIVELHAVLGN--------RWSQIAAQLPG-RT---DDEIKNLWNSSIKKK 115 (430)
Q Consensus 76 ~~Llelv~k~G~--------~Ws~IA~~Lpg-RT---~~QcR~RW~~~Lkk~ 115 (430)
-+|..+|.+.|+ .|..||+.|.- .+ +..+|..|.++|.+.
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 357788888884 59999999932 22 568899999888764
No 102
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=51.22 E-value=18 Score=30.74 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCC--------chhHHhhhCCC-C---CHHHHHHHHhhhhhHHH
Q 014135 76 SLIVELHAVLGN--------RWSQIAAQLPG-R---TDDEIKNLWNSSIKKKL 116 (430)
Q Consensus 76 ~~Llelv~k~G~--------~Ws~IA~~Lpg-R---T~~QcR~RW~~~Lkk~l 116 (430)
-+|..+|.++|+ .|.+||+.|.- . .+..+|..|.++|.+.-
T Consensus 54 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE 106 (125)
T 2cxy_A 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFE 106 (125)
T ss_dssp HHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 357788888884 59999999822 2 25688999999998753
No 103
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=47.81 E-value=24 Score=35.75 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHHhC-CchhHHhhhCC-CCCHHHHHHHHhhhhhH
Q 014135 68 GAFSVQEESLIVELHAVLG-NRWSQIAAQLP-GRTDDEIKNLWNSSIKK 114 (430)
Q Consensus 68 g~WT~EED~~Llelv~k~G-~~Ws~IA~~Lp-gRT~~QcR~RW~~~Lkk 114 (430)
+.|+.-|=..++.++.+|| .+-..||..|. |+|..+|+ +|...+=.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~ 171 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWS 171 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHH
Confidence 4699999999999999999 56999999997 99999999 55444433
No 104
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=47.22 E-value=25 Score=29.79 Aligned_cols=39 Identities=18% Similarity=0.351 Sum_probs=29.8
Q ss_pred HHHHHHHHhCC--------chhHHhhhCCCC--C--HHHHHHHHhhhhhHH
Q 014135 77 LIVELHAVLGN--------RWSQIAAQLPGR--T--DDEIKNLWNSSIKKK 115 (430)
Q Consensus 77 ~Llelv~k~G~--------~Ws~IA~~LpgR--T--~~QcR~RW~~~Lkk~ 115 (430)
+|..+|.+.|+ .|.+|++.|.-- + +..+|..|.++|.+.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 57788888884 599999998221 2 468899999988775
No 105
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=45.96 E-value=15 Score=33.29 Aligned_cols=29 Identities=28% Similarity=0.586 Sum_probs=22.4
Q ss_pred CCCCccCCCHHHHHHHH--------HHHHHhCCCCccccc
Q 014135 10 QKLRKGLWSPEEDEKLL--------NYITKHGHGCWSSVP 41 (430)
Q Consensus 10 p~lkKg~WT~EEDe~Ll--------~lV~kyG~~nW~~IA 41 (430)
|.-..|-||+|+|+.|. ++++||| |..|.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie 146 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRME 146 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHH
Confidence 34568999999999986 6888888 55554
No 106
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=45.55 E-value=27 Score=29.71 Aligned_cols=40 Identities=15% Similarity=0.249 Sum_probs=31.3
Q ss_pred HHHHHHHHHhCC--------chhHHhhhC--CCC---CHHHHHHHHhhhhhHH
Q 014135 76 SLIVELHAVLGN--------RWSQIAAQL--PGR---TDDEIKNLWNSSIKKK 115 (430)
Q Consensus 76 ~~Llelv~k~G~--------~Ws~IA~~L--pgR---T~~QcR~RW~~~Lkk~ 115 (430)
-+|..+|.+.|+ .|..|++.| +.. ....+|..|.++|.+.
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 457888888884 599999998 322 2678899999999875
No 107
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=44.45 E-value=14 Score=31.60 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=31.7
Q ss_pred HHHHHHHHhCC--------chhHHhhhCCCCCHHHHHHHHhhhhhHHHH
Q 014135 77 LIVELHAVLGN--------RWSQIAAQLPGRTDDEIKNLWNSSIKKKLR 117 (430)
Q Consensus 77 ~Llelv~k~G~--------~Ws~IA~~LpgRT~~QcR~RW~~~Lkk~lk 117 (430)
+|..+|.+.|+ .|.+|++.|.--.+..+|..|.++|.+.-.
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 46777777774 499999998333389999999999987644
No 108
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=42.70 E-value=19 Score=28.97 Aligned_cols=39 Identities=18% Similarity=0.390 Sum_probs=29.0
Q ss_pred HHHHHHHHhCC--------chhHHhhhCC--C-C-CHHHHHHHHhhhhhHH
Q 014135 77 LIVELHAVLGN--------RWSQIAAQLP--G-R-TDDEIKNLWNSSIKKK 115 (430)
Q Consensus 77 ~Llelv~k~G~--------~Ws~IA~~Lp--g-R-T~~QcR~RW~~~Lkk~ 115 (430)
+|..+|.+.|+ .|.+|++.|. . - .+..+|..|.++|.+.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~y 90 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYPY 90 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHH
Confidence 57778888773 5999999982 1 1 2568899999888664
No 109
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=42.24 E-value=32 Score=29.35 Aligned_cols=77 Identities=14% Similarity=0.295 Sum_probs=49.8
Q ss_pred ccCCCHHHH--HHHHHHHHHhCCCCccccccccCccCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC----
Q 014135 14 KGLWSPEED--EKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSVQEESLIVELHAVLGN---- 87 (430)
Q Consensus 14 Kg~WT~EED--e~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Llelv~k~G~---- 87 (430)
+.+|.+.+. +.|.+..++.|. ....|+.. + +|.. +--+|..+|.+.|+
T Consensus 7 ~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~i-~-gk~l-----------------------DL~~Ly~~V~~~GG~~~V 60 (121)
T 2rq5_A 7 GRRWGPNVQRLACIKKHLRSQGI-TMDELPLI-G-GCEL-----------------------DLACFFRLINEMGGMQQV 60 (121)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTC-CCSSCCEE-T-TEEC-----------------------CHHHHHHHHHHTTSHHHH
T ss_pred hHhcCCcHHHHHHHHHHHHHcCC-CCCCCCcC-C-CEec-----------------------cHHHHHHHHHHcCcHHHh
Confidence 456887765 456666666675 35445432 2 2221 12357888888884
Q ss_pred ----chhHHhhhC--CCC---CHHHHHHHHhhhhhHHH
Q 014135 88 ----RWSQIAAQL--PGR---TDDEIKNLWNSSIKKKL 116 (430)
Q Consensus 88 ----~Ws~IA~~L--pgR---T~~QcR~RW~~~Lkk~l 116 (430)
.|.+||..| |.- ....+|..|.++|-+.-
T Consensus 61 t~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE 98 (121)
T 2rq5_A 61 TDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD 98 (121)
T ss_dssp HHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH
T ss_pred cccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH
Confidence 599999998 322 25688999999887764
No 110
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=42.16 E-value=26 Score=25.15 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhCCchhHHhhhCCCCCHHHHHHHHhhhhhH
Q 014135 73 QEESLIVELHAVLGNRWSQIAAQLPGRTDDEIKNLWNSSIKK 114 (430)
Q Consensus 73 EED~~Llelv~k~G~~Ws~IA~~LpgRT~~QcR~RW~~~Lkk 114 (430)
+.+..++.++-..|-.+.+||..| |-+...|+.+....+++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455566667667788999999999 77888998877665544
No 111
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=41.20 E-value=29 Score=30.25 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=31.4
Q ss_pred HHHHHHHHHhCC--------chhHHhhhC--CCC---CHHHHHHHHhhhhhHHH
Q 014135 76 SLIVELHAVLGN--------RWSQIAAQL--PGR---TDDEIKNLWNSSIKKKL 116 (430)
Q Consensus 76 ~~Llelv~k~G~--------~Ws~IA~~L--pgR---T~~QcR~RW~~~Lkk~l 116 (430)
-+|..+|.+.|+ .|.+|++.| +.. .+..+|..|.++|.+.-
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE 120 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYE 120 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 357788888884 599999998 332 26789999999987753
No 112
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=37.90 E-value=6.2 Score=33.20 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=29.0
Q ss_pred HHHHHHHHhCC-------CCccccccccCccCCccccccccccccCC
Q 014135 24 KLLNYITKHGH-------GCWSSVPKLAGLQRCGKSCRLRWINYLRP 63 (430)
Q Consensus 24 ~Ll~lV~kyG~-------~nW~~IA~~l~~~Rt~~QCr~Rw~n~L~p 63 (430)
+|..+|.+.|. +.|.+||..++... +..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 56677777763 35999999998444 77888888888754
No 113
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=37.21 E-value=1.3e+02 Score=24.28 Aligned_cols=87 Identities=18% Similarity=0.148 Sum_probs=50.5
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCccccccccCccCCccccc---ccccccc--CCCCCCCCCCHHHHHHHHHHHHHhC-Cc
Q 014135 15 GLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCR---LRWINYL--RPDLKRGAFSVQEESLIVELHAVLG-NR 88 (430)
Q Consensus 15 g~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr---~Rw~n~L--~p~lkkg~WT~EED~~Llelv~k~G-~~ 88 (430)
...|.++-..++.++. -|. .-.+||+.+| .+...++ .||...- .........+++++..|+++ ...+ -.
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~-s~~~ia~~lg--is~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~-~~~~~~s 79 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV-SLHEMSRKIS--RSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRA-ASNSCKT 79 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH-HHHCCCC
T ss_pred ccCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHH-HhCCCCC
Confidence 3578888888877773 453 5789999887 3333332 2332221 11122335788888888887 3333 33
Q ss_pred hhHHhhhCCC-CCHHHHHH
Q 014135 89 WSQIAAQLPG-RTDDEIKN 106 (430)
Q Consensus 89 Ws~IA~~Lpg-RT~~QcR~ 106 (430)
-.+|+..+.- -+...|..
T Consensus 80 ~~~i~~~lg~~~s~~tV~r 98 (141)
T 1u78_A 80 ARDIRNELQLSASKRTILN 98 (141)
T ss_dssp HHHHHHHTTCCSCHHHHHH
T ss_pred HHHHHHHHCCCccHHHHHH
Confidence 4678877721 45555543
No 114
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=36.40 E-value=36 Score=25.16 Aligned_cols=42 Identities=17% Similarity=0.385 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHH----hCCchhHHhhhCCCCCHHHHHHHHhhhhhHH
Q 014135 73 QEESLIVELHAV----LGNRWSQIAAQLPGRTDDEIKNLWNSSIKKK 115 (430)
Q Consensus 73 EED~~Llelv~k----~G~~Ws~IA~~LpgRT~~QcR~RW~~~Lkk~ 115 (430)
+.+..++.+.-- .|-.+.+||+.| |-+...|+.+....+++-
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 344555555554 567899999999 889999988877665443
No 115
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=35.59 E-value=8.1 Score=31.47 Aligned_cols=46 Identities=13% Similarity=0.344 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhCCCCccccccccCccCCccccccccccccCCCC-------CCCCCCHHHHHHHHH
Q 014135 22 DEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDL-------KRGAFSVQEESLIVE 80 (430)
Q Consensus 22 De~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr~Rw~n~L~p~l-------kkg~WT~EED~~Lle 80 (430)
+.+|.++|..|| |...+..+. ..|.. .+|.+ +|.+|-.+..+.|.-
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~-----I~CF~-----~~PSikSSLKFLRKTpWAR~KVE~lYL 70 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVN-----INCFK-----KDPSIKSSLKFLRKTDWARERVENIYL 70 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTT-----SSSTT-----SSCCHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcc-----cccCC-----CCCchHHHHHHHhcCHhHHHHHHHHHH
Confidence 568999999999 999998765 33432 35654 577898887776653
No 116
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=32.83 E-value=33 Score=31.04 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=22.6
Q ss_pred ccccccccC-CCCCCCCCCHHHHHHHH--------HHHHHhC
Q 014135 54 RLRWINYLR-PDLKRGAFSVQEESLIV--------ELHAVLG 86 (430)
Q Consensus 54 r~Rw~n~L~-p~lkkg~WT~EED~~Ll--------elv~k~G 86 (430)
-+.+..-.. |.-.+|-||.|+|+.|. .|+++||
T Consensus 100 L~~l~~GkgiP~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 100 LNMFKDNVNPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp HHHHHHTCSSCTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred HHHHHhCCCCCCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 334443333 56789999999999886 5566665
No 117
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=31.99 E-value=11 Score=31.04 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=28.5
Q ss_pred HHHHHHHHhCC-------CCccccccccCccC----CccccccccccccCC
Q 014135 24 KLLNYITKHGH-------GCWSSVPKLAGLQR----CGKSCRLRWINYLRP 63 (430)
Q Consensus 24 ~Ll~lV~kyG~-------~nW~~IA~~l~~~R----t~~QCr~Rw~n~L~p 63 (430)
+|..+|.+.|- +.|.+||..|+... .+.+++..|.++|.|
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56677777652 35999999887433 235678888888865
No 118
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=30.05 E-value=40 Score=24.56 Aligned_cols=41 Identities=12% Similarity=0.264 Sum_probs=29.1
Q ss_pred HHHHHHHHHHH----HhCCchhHHhhhCCCCCHHHHHHHHhhhhhH
Q 014135 73 QEESLIVELHA----VLGNRWSQIAAQLPGRTDDEIKNLWNSSIKK 114 (430)
Q Consensus 73 EED~~Llelv~----k~G~~Ws~IA~~LpgRT~~QcR~RW~~~Lkk 114 (430)
+.+..++.+.- ..|-.+.+||+.| |-+...|+.+....+++
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34444555544 3467899999999 88999999887766544
No 119
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=29.12 E-value=28 Score=28.58 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCC--------chhHHhhhCC--CC---CHHHHHHHHhhhhhHH
Q 014135 76 SLIVELHAVLGN--------RWSQIAAQLP--GR---TDDEIKNLWNSSIKKK 115 (430)
Q Consensus 76 ~~Llelv~k~G~--------~Ws~IA~~Lp--gR---T~~QcR~RW~~~Lkk~ 115 (430)
-+|..+|.+.|+ .|.+||+.|. .. .+..+|..|..+|.+.
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 357788888873 5999999982 21 2467899998888664
No 120
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=29.01 E-value=9.5 Score=32.13 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=27.6
Q ss_pred HHHHHHHHhCC-------CCccccccccCccCC---ccccccccccccCC
Q 014135 24 KLLNYITKHGH-------GCWSSVPKLAGLQRC---GKSCRLRWINYLRP 63 (430)
Q Consensus 24 ~Ll~lV~kyG~-------~nW~~IA~~l~~~Rt---~~QCr~Rw~n~L~p 63 (430)
+|..+|.+.|- +.|.+||..|+...+ +.+.+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57778887763 359999999885432 34567777777643
No 121
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=27.66 E-value=9.9 Score=32.43 Aligned_cols=40 Identities=25% Similarity=0.471 Sum_probs=27.8
Q ss_pred HHHHHHHHhCC-------CCccccccccCccCC----ccccccccccccCC
Q 014135 24 KLLNYITKHGH-------GCWSSVPKLAGLQRC----GKSCRLRWINYLRP 63 (430)
Q Consensus 24 ~Ll~lV~kyG~-------~nW~~IA~~l~~~Rt----~~QCr~Rw~n~L~p 63 (430)
+|..+|.+.|. +.|.+||..|+...+ +..++..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56677777763 359999999885443 34567778887754
No 122
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=27.30 E-value=2.2e+02 Score=23.83 Aligned_cols=77 Identities=8% Similarity=0.006 Sum_probs=46.1
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCccccccccCccCCccccccccccc------cCCCCC----CCCCCHHHHHHHHHHHHH
Q 014135 15 GLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY------LRPDLK----RGAFSVQEESLIVELHAV 84 (430)
Q Consensus 15 g~WT~EEDe~Ll~lV~kyG~~nW~~IA~~l~~~Rt~~QCr~Rw~n~------L~p~lk----kg~WT~EED~~Llelv~k 84 (430)
.+.|.++-..++.++. -|. ...+||+.++ .+...+ .||.+. +.+... +...+.++.+.|++++.+
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lg--is~~TV-~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV-RPCDISRQLR--VSHGCV-SKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC-CHHHHHHHHT--CCSHHH-HHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHH-HHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4688888888888884 453 5789999887 333322 233322 222211 335788888888888876
Q ss_pred hC-CchhHHhhhC
Q 014135 85 LG-NRWSQIAAQL 96 (430)
Q Consensus 85 ~G-~~Ws~IA~~L 96 (430)
.. -.-.+|+..+
T Consensus 99 ~~~~s~~~i~~~l 111 (159)
T 2k27_A 99 NPTMFAWEIRDRL 111 (159)
T ss_dssp CSSSCHHHHHHHH
T ss_pred CccchHHHHHHHH
Confidence 54 2223454444
No 123
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=26.54 E-value=62 Score=24.99 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhCCchhHHhhhCCCCCHHHHHHHHhhhhhH
Q 014135 73 QEESLIVELHAVLGNRWSQIAAQLPGRTDDEIKNLWNSSIKK 114 (430)
Q Consensus 73 EED~~Llelv~k~G~~Ws~IA~~LpgRT~~QcR~RW~~~Lkk 114 (430)
+.+..++.++...|-.-.+||+.| |.+...|+.+....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 345556666666778899999999 78888888887655443
No 124
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=22.26 E-value=27 Score=30.44 Aligned_cols=40 Identities=25% Similarity=0.472 Sum_probs=27.9
Q ss_pred HHHHHHHHhCC-------CCccccccccCccCC----ccccccccccccCC
Q 014135 24 KLLNYITKHGH-------GCWSSVPKLAGLQRC----GKSCRLRWINYLRP 63 (430)
Q Consensus 24 ~Ll~lV~kyG~-------~nW~~IA~~l~~~Rt----~~QCr~Rw~n~L~p 63 (430)
+|..+|.+.|- +.|.+||..|+...+ +..++..|.++|.|
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 46666766653 359999998875332 35678888888876
No 125
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=21.56 E-value=51 Score=28.41 Aligned_cols=45 Identities=7% Similarity=0.000 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhC-CchhHHhhhCCCCCHHHHHHHHhhhhhHHHHh
Q 014135 73 QEESLIVELHAVLG-NRWSQIAAQLPGRTDDEIKNLWNSSIKKKLRQ 118 (430)
Q Consensus 73 EED~~Llelv~k~G-~~Ws~IA~~LpgRT~~QcR~RW~~~Lkk~lkk 118 (430)
+-|.+|+.+..+.| -.|..||+.+ |-+...|+.|++.+....+-+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 46788888888877 4799999999 889999999998877666543
No 126
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=20.74 E-value=1.3e+02 Score=24.52 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHhCCchhHHhhhCCCCCHHHHHH
Q 014135 71 SVQEESLIVELHAVLGNRWSQIAAQLPGRTDDEIKN 106 (430)
Q Consensus 71 T~EED~~Llelv~k~G~~Ws~IA~~LpgRT~~QcR~ 106 (430)
+..-+..|..+....|..|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 56667788888899999999999999 666665543
No 127
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=20.69 E-value=1.5e+02 Score=21.64 Aligned_cols=42 Identities=19% Similarity=0.178 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHhCCchhHHhhhCCCCCHHHHHHHHhhhhhH
Q 014135 70 FSVQEESLIVELHAVLGNRWSQIAAQLPGRTDDEIKNLWNSSIKK 114 (430)
Q Consensus 70 WT~EED~~Llelv~k~G~~Ws~IA~~LpgRT~~QcR~RW~~~Lkk 114 (430)
+++.|-+ ++.++ ..|-.-.+||+.| |-+...|+.+....+++
T Consensus 17 L~~~e~~-vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQ-VLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHH-HHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3444444 44554 5677899999999 77888888877655543
No 128
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=20.08 E-value=1.2e+02 Score=25.82 Aligned_cols=30 Identities=13% Similarity=0.080 Sum_probs=23.5
Q ss_pred hCCchhHHhhhCCCCCHHHHHHHHhhhhhHH
Q 014135 85 LGNRWSQIAAQLPGRTDDEIKNLWNSSIKKK 115 (430)
Q Consensus 85 ~G~~Ws~IA~~LpgRT~~QcR~RW~~~Lkk~ 115 (430)
.|-...+||+.| |-+...|+.+....+++-
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~L 184 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREAI 184 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 366789999999 788999988877666543
Done!