Query 014137
Match_columns 430
No_of_seqs 245 out of 1628
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 02:12:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014137.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014137hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 2E-121 5E-126 934.7 34.9 386 43-430 28-418 (524)
2 PLN02998 beta-glucosidase 100.0 4E-109 8E-114 865.0 36.2 379 43-430 22-403 (497)
3 PLN02849 beta-glucosidase 100.0 4E-109 9E-114 865.9 36.4 372 45-430 23-396 (503)
4 PLN02814 beta-glucosidase 100.0 1E-108 3E-113 862.6 35.3 372 47-430 23-398 (504)
5 COG2723 BglB Beta-glucosidase/ 100.0 1E-104 3E-109 806.6 32.8 358 50-430 2-366 (460)
6 PRK13511 6-phospho-beta-galact 100.0 2E-103 3E-108 821.3 35.1 361 50-430 3-379 (469)
7 PRK09593 arb 6-phospho-beta-gl 100.0 3E-103 7E-108 818.8 34.9 356 50-430 4-379 (478)
8 TIGR01233 lacG 6-phospho-beta- 100.0 6E-103 1E-107 815.3 36.0 357 50-430 2-378 (467)
9 PF00232 Glyco_hydro_1: Glycos 100.0 4E-104 9E-109 825.1 25.0 360 50-430 3-366 (455)
10 PRK09589 celA 6-phospho-beta-g 100.0 3E-102 7E-107 811.0 35.4 355 51-430 3-378 (476)
11 PRK15014 6-phospho-beta-glucos 100.0 3E-101 5E-106 803.9 36.6 357 48-430 2-379 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 1E-100 2E-105 798.1 35.3 355 51-430 3-376 (474)
13 TIGR03356 BGL beta-galactosida 100.0 8E-100 2E-104 785.6 33.5 348 52-430 1-348 (427)
14 PF02449 Glyco_hydro_42: Beta- 99.3 1.1E-11 2.4E-16 126.9 9.0 109 105-217 10-141 (374)
15 PF00150 Cellulase: Cellulase 99.2 2.3E-11 4.9E-16 118.1 8.9 110 106-218 22-135 (281)
16 smart00633 Glyco_10 Glycosyl h 99.0 1.1E-08 2.5E-13 99.3 17.6 82 127-216 2-85 (254)
17 PF07745 Glyco_hydro_53: Glyco 98.8 8.6E-07 1.9E-11 89.1 20.1 204 108-429 27-239 (332)
18 COG1874 LacA Beta-galactosidas 98.4 4.1E-07 9E-12 98.4 7.6 115 106-224 31-172 (673)
19 COG2730 BglC Endoglucanase [Ca 98.1 8E-06 1.7E-10 84.8 9.4 109 108-216 76-193 (407)
20 PF01229 Glyco_hydro_39: Glyco 97.7 0.00013 2.8E-09 77.6 9.0 106 107-217 41-168 (486)
21 PF00331 Glyco_hydro_10: Glyco 97.7 0.00022 4.7E-09 71.8 9.7 123 52-217 6-137 (320)
22 COG3867 Arabinogalactan endo-1 97.5 0.025 5.4E-07 55.6 20.8 137 51-216 34-183 (403)
23 PF01301 Glyco_hydro_35: Glyco 97.4 0.00064 1.4E-08 68.4 9.4 108 107-215 26-151 (319)
24 PF01373 Glyco_hydro_14: Glyco 97.1 0.00063 1.4E-08 69.6 4.9 106 104-215 15-151 (402)
25 PF14587 Glyco_hydr_30_2: O-Gl 96.8 0.0096 2.1E-07 60.8 11.1 101 115-216 57-185 (384)
26 PLN02803 beta-amylase 96.8 0.0042 9E-08 65.3 8.2 107 105-216 107-252 (548)
27 PLN00197 beta-amylase; Provisi 96.8 0.0048 1E-07 65.1 8.4 106 106-216 128-272 (573)
28 PLN02161 beta-amylase 96.7 0.0062 1.4E-07 63.7 8.6 111 101-216 113-262 (531)
29 PF02836 Glyco_hydro_2_C: Glyc 96.7 0.011 2.3E-07 58.7 9.9 93 103-214 34-132 (298)
30 PLN02801 beta-amylase 96.6 0.011 2.5E-07 61.8 9.4 97 106-205 38-173 (517)
31 PLN03059 beta-galactosidase; P 96.5 0.012 2.5E-07 65.7 9.8 107 106-214 60-187 (840)
32 COG3693 XynA Beta-1,4-xylanase 96.5 0.0075 1.6E-07 59.9 7.1 85 126-216 67-153 (345)
33 PLN02905 beta-amylase 96.3 0.019 4.2E-07 61.4 9.3 100 102-204 283-421 (702)
34 PLN02705 beta-amylase 96.3 0.014 3.1E-07 62.1 8.2 97 105-204 268-403 (681)
35 PF13204 DUF4038: Protein of u 96.2 0.028 6.1E-07 55.8 9.8 101 109-214 34-156 (289)
36 PF03198 Glyco_hydro_72: Gluca 96.2 0.042 9.1E-07 54.7 10.8 89 106-213 54-144 (314)
37 PRK10150 beta-D-glucuronidase; 95.9 0.032 7E-07 60.9 9.1 93 105-214 313-418 (604)
38 PF14488 DUF4434: Domain of un 95.1 0.14 3E-06 46.7 9.0 101 106-215 21-131 (166)
39 KOG0496 Beta-galactosidase [Ca 93.8 0.45 9.7E-06 51.6 10.4 108 106-215 50-176 (649)
40 PRK09525 lacZ beta-D-galactosi 93.4 0.34 7.3E-06 56.3 9.4 91 103-215 369-464 (1027)
41 PRK10340 ebgA cryptic beta-D-g 91.9 0.69 1.5E-05 53.8 9.5 90 103-214 353-450 (1021)
42 COG3250 LacZ Beta-galactosidas 90.3 1.3 2.9E-05 49.9 9.4 90 101-215 317-408 (808)
43 COG3664 XynB Beta-xylosidase [ 88.2 0.98 2.1E-05 46.5 5.9 101 114-219 14-119 (428)
44 smart00642 Aamy Alpha-amylase 85.7 2.2 4.8E-05 38.7 6.3 64 103-166 17-91 (166)
45 COG3934 Endo-beta-mannanase [C 83.2 0.59 1.3E-05 49.0 1.5 109 107-216 28-150 (587)
46 PF07488 Glyco_hydro_67M: Glyc 82.5 9.3 0.0002 38.1 9.4 87 104-203 56-150 (328)
47 PLN02361 alpha-amylase 80.2 3.9 8.5E-05 42.6 6.3 64 102-165 26-96 (401)
48 PF10566 Glyco_hydro_97: Glyco 79.8 9.1 0.0002 37.8 8.3 119 78-200 9-149 (273)
49 PF11790 Glyco_hydro_cc: Glyco 77.1 2.9 6.4E-05 40.2 4.1 27 402-429 149-175 (239)
50 PLN00196 alpha-amylase; Provis 77.0 4.5 9.9E-05 42.5 5.7 65 103-167 42-116 (428)
51 cd02932 OYE_YqiM_FMN Old yello 74.4 83 0.0018 31.7 14.0 39 130-168 62-100 (336)
52 PF00128 Alpha-amylase: Alpha 74.3 6.3 0.00014 38.0 5.6 57 108-166 7-73 (316)
53 PF02638 DUF187: Glycosyl hydr 72.6 18 0.0004 36.2 8.6 98 105-202 19-154 (311)
54 PRK05402 glycogen branching en 69.8 21 0.00045 40.1 9.1 92 105-202 265-397 (726)
55 PRK05799 coproporphyrinogen II 69.0 13 0.00028 38.1 6.7 96 107-219 98-197 (374)
56 KOG2233 Alpha-N-acetylglucosam 68.9 13 0.00029 39.3 6.6 111 104-214 77-248 (666)
57 TIGR02402 trehalose_TreZ malto 68.4 21 0.00045 38.7 8.4 92 104-202 110-237 (542)
58 cd07945 DRE_TIM_CMS Leptospira 68.2 14 0.0003 36.6 6.5 82 107-199 76-158 (280)
59 PRK09441 cytoplasmic alpha-amy 67.8 8.5 0.00018 40.9 5.3 64 102-165 19-101 (479)
60 PLN02784 alpha-amylase 67.6 12 0.00027 42.4 6.5 64 102-165 518-588 (894)
61 PRK05692 hydroxymethylglutaryl 67.3 19 0.00041 35.7 7.3 85 106-199 80-166 (287)
62 cd06543 GH18_PF-ChiA-like PF-C 66.6 27 0.00059 34.8 8.2 79 112-203 19-105 (294)
63 PRK12313 glycogen branching en 66.6 22 0.00048 39.2 8.3 93 104-202 169-302 (633)
64 cd07939 DRE_TIM_NifV Streptomy 66.2 17 0.00036 35.3 6.5 59 107-165 71-130 (259)
65 PF12876 Cellulase-like: Sugar 63.7 4.4 9.5E-05 32.6 1.6 19 197-215 1-22 (88)
66 COG1523 PulA Type II secretory 63.6 14 0.0003 41.3 5.9 55 111-165 206-285 (697)
67 TIGR00612 ispG_gcpE 1-hydroxy- 63.2 59 0.0013 33.0 9.8 89 97-199 74-162 (346)
68 PF14871 GHL6: Hypothetical gl 62.8 32 0.00068 30.1 7.0 57 109-166 4-65 (132)
69 PF05089 NAGLU: Alpha-N-acetyl 62.1 18 0.00039 36.6 6.0 109 104-214 18-184 (333)
70 cd03174 DRE_TIM_metallolyase D 61.2 22 0.00048 34.0 6.4 82 108-202 77-159 (265)
71 TIGR02403 trehalose_treC alpha 61.1 12 0.00026 40.6 4.9 62 104-165 26-95 (543)
72 cd06593 GH31_xylosidase_YicI Y 61.0 52 0.0011 32.6 9.2 105 107-214 26-160 (308)
73 TIGR02090 LEU1_arch isopropylm 60.2 23 0.00049 36.3 6.5 60 107-166 73-133 (363)
74 PRK14041 oxaloacetate decarbox 59.9 29 0.00062 37.0 7.4 97 103-216 88-209 (467)
75 PRK10933 trehalose-6-phosphate 58.5 14 0.00031 40.0 5.0 61 104-166 32-102 (551)
76 PLN02746 hydroxymethylglutaryl 58.5 27 0.00058 35.7 6.6 84 107-199 123-208 (347)
77 PRK12581 oxaloacetate decarbox 58.4 32 0.0007 36.6 7.4 56 103-171 98-158 (468)
78 cd07948 DRE_TIM_HCS Saccharomy 57.8 16 0.00035 35.7 4.7 59 108-166 74-133 (262)
79 cd04733 OYE_like_2_FMN Old yel 57.7 2E+02 0.0042 29.0 12.8 39 129-167 63-104 (338)
80 cd07944 DRE_TIM_HOA_like 4-hyd 57.3 38 0.00082 33.1 7.3 65 108-199 85-149 (266)
81 PRK14040 oxaloacetate decarbox 55.9 36 0.00079 37.3 7.5 97 103-217 90-212 (593)
82 cd07937 DRE_TIM_PC_TC_5S Pyruv 55.4 58 0.0013 31.9 8.3 68 107-199 93-160 (275)
83 PRK14706 glycogen branching en 55.2 40 0.00086 37.4 7.7 89 112-202 175-299 (639)
84 PRK09505 malS alpha-amylase; R 55.0 22 0.00048 39.7 5.8 59 107-165 232-312 (683)
85 TIGR02456 treS_nterm trehalose 54.7 16 0.00035 39.4 4.6 59 107-165 30-96 (539)
86 TIGR01515 branching_enzym alph 54.7 66 0.0014 35.4 9.4 99 104-202 155-288 (613)
87 TIGR01210 conserved hypothetic 54.6 65 0.0014 32.2 8.6 108 108-229 117-229 (313)
88 cd06602 GH31_MGAM_SI_GAA This 54.0 65 0.0014 32.7 8.6 69 148-217 69-169 (339)
89 cd06592 GH31_glucosidase_KIAA1 53.2 67 0.0014 31.9 8.4 106 107-215 32-167 (303)
90 PLN02447 1,4-alpha-glucan-bran 53.0 23 0.0005 39.9 5.5 99 103-201 248-382 (758)
91 cd06598 GH31_transferase_CtsZ 53.0 88 0.0019 31.3 9.3 107 108-217 27-168 (317)
92 TIGR02660 nifV_homocitr homoci 52.8 41 0.00088 34.5 7.0 58 108-165 75-133 (365)
93 cd02803 OYE_like_FMN_family Ol 52.7 1E+02 0.0022 30.7 9.7 37 132-168 64-100 (327)
94 PRK10785 maltodextrin glucosid 52.7 24 0.00053 38.7 5.6 58 107-166 181-247 (598)
95 cd06603 GH31_GANC_GANAB_alpha 52.2 82 0.0018 31.8 9.0 71 148-218 67-167 (339)
96 TIGR00433 bioB biotin syntheta 51.6 39 0.00084 33.1 6.4 55 107-164 122-177 (296)
97 PRK14705 glycogen branching en 51.3 73 0.0016 38.0 9.4 94 108-202 768-897 (1224)
98 PRK12399 tagatose 1,6-diphosph 51.2 62 0.0013 32.7 7.6 58 111-171 111-168 (324)
99 PRK04161 tagatose 1,6-diphosph 51.2 63 0.0014 32.7 7.7 59 110-171 112-170 (329)
100 cd06600 GH31_MGAM-like This fa 51.1 1.1E+02 0.0023 30.8 9.5 70 147-217 66-164 (317)
101 PRK03705 glycogen debranching 50.6 33 0.00071 38.2 6.2 54 111-165 185-262 (658)
102 TIGR00539 hemN_rel putative ox 49.9 40 0.00086 34.3 6.3 92 108-215 100-194 (360)
103 PRK11858 aksA trans-homoaconit 49.9 50 0.0011 34.0 7.1 58 108-165 78-136 (378)
104 PRK14511 maltooligosyl trehalo 49.7 27 0.00059 39.9 5.4 56 104-165 19-89 (879)
105 cd06601 GH31_lyase_GLase GLase 49.6 76 0.0016 32.2 8.2 72 148-221 67-141 (332)
106 PF03659 Glyco_hydro_71: Glyco 49.0 59 0.0013 33.7 7.5 50 106-165 18-67 (386)
107 TIGR02401 trehalose_TreY malto 48.0 30 0.00064 39.4 5.4 62 104-165 15-85 (825)
108 cd07941 DRE_TIM_LeuA3 Desulfob 47.9 1.4E+02 0.003 29.2 9.6 61 108-168 81-142 (273)
109 PRK09058 coproporphyrinogen II 47.5 81 0.0018 33.3 8.4 107 107-228 162-270 (449)
110 PRK12331 oxaloacetate decarbox 47.4 67 0.0014 34.0 7.7 93 108-217 99-211 (448)
111 COG1501 Alpha-glucosidases, fa 47.4 76 0.0016 36.1 8.5 101 117-220 294-422 (772)
112 cd07938 DRE_TIM_HMGL 3-hydroxy 47.1 63 0.0014 31.8 7.0 84 107-199 75-160 (274)
113 COG3589 Uncharacterized conser 45.3 47 0.001 33.7 5.7 72 108-193 19-90 (360)
114 PRK12858 tagatose 1,6-diphosph 45.0 75 0.0016 32.4 7.4 52 111-165 112-163 (340)
115 cd07943 DRE_TIM_HOA 4-hydroxy- 44.6 2.3E+02 0.005 27.3 10.5 45 108-165 88-132 (263)
116 COG0821 gcpE 1-hydroxy-2-methy 44.6 1.7E+02 0.0036 29.9 9.4 90 97-200 76-165 (361)
117 cd06591 GH31_xylosidase_XylS X 42.8 1.6E+02 0.0034 29.5 9.3 71 146-217 67-163 (319)
118 PRK12568 glycogen branching en 42.3 33 0.00072 38.6 4.6 93 104-202 268-401 (730)
119 PF03511 Fanconi_A: Fanconi an 42.0 20 0.00044 27.1 2.0 38 129-168 19-56 (64)
120 PRK14510 putative bifunctional 40.3 43 0.00093 40.0 5.4 62 104-165 184-267 (1221)
121 TIGR01108 oadA oxaloacetate de 39.7 1E+02 0.0022 33.9 7.8 93 108-217 94-206 (582)
122 TIGR02629 L_rham_iso_rhiz L-rh 39.4 1.5E+02 0.0032 31.1 8.4 88 108-209 73-171 (412)
123 TIGR03234 OH-pyruv-isom hydrox 39.4 76 0.0016 30.2 6.2 66 103-171 82-150 (254)
124 TIGR03581 EF_0839 conserved hy 39.1 1.1E+02 0.0024 29.3 6.8 75 105-191 135-231 (236)
125 PF12891 Glyco_hydro_44: Glyco 39.1 93 0.002 30.1 6.5 22 145-166 24-45 (239)
126 cd07940 DRE_TIM_IPMS 2-isoprop 39.1 80 0.0017 30.7 6.4 80 108-202 72-156 (268)
127 cd06599 GH31_glycosidase_Aec37 38.2 2.4E+02 0.0051 28.2 9.7 69 147-216 75-171 (317)
128 PRK10605 N-ethylmaleimide redu 38.0 4.6E+02 0.0099 26.8 14.5 191 137-353 71-321 (362)
129 PRK00366 ispG 4-hydroxy-3-meth 37.8 2.1E+02 0.0045 29.4 9.1 90 97-199 82-171 (360)
130 TIGR03217 4OH_2_O_val_ald 4-hy 37.6 2.3E+02 0.005 28.7 9.5 46 108-166 90-135 (333)
131 PRK07094 biotin synthase; Prov 37.4 96 0.0021 30.8 6.8 57 106-165 127-185 (323)
132 cd02930 DCR_FMN 2,4-dienoyl-Co 37.1 4E+02 0.0087 27.0 11.3 128 137-288 69-217 (353)
133 cd06545 GH18_3CO4_chitinase Th 36.8 91 0.002 29.9 6.3 72 126-202 28-99 (253)
134 TIGR02635 RhaI_grampos L-rhamn 36.6 2.4E+02 0.0053 29.2 9.6 92 99-208 35-136 (378)
135 cd06542 GH18_EndoS-like Endo-b 36.3 1.1E+02 0.0024 29.1 6.9 55 144-202 50-104 (255)
136 PTZ00445 p36-lilke protein; Pr 36.3 75 0.0016 30.3 5.3 56 111-166 35-99 (219)
137 cd06525 GH25_Lyc-like Lyc mura 36.3 2.5E+02 0.0053 25.5 8.8 24 186-209 101-124 (184)
138 PRK13523 NADPH dehydrogenase N 36.0 3.9E+02 0.0084 27.1 10.9 135 137-297 73-229 (337)
139 TIGR03471 HpnJ hopanoid biosyn 35.7 1.2E+02 0.0027 32.0 7.6 60 108-171 287-348 (472)
140 TIGR02104 pulA_typeI pullulana 35.7 80 0.0017 34.7 6.3 56 110-165 169-249 (605)
141 TIGR01212 radical SAM protein, 35.5 95 0.0021 30.9 6.3 73 144-229 162-234 (302)
142 COG0366 AmyA Glycosidases [Car 35.2 43 0.00093 35.0 4.0 59 109-167 33-101 (505)
143 cd03130 GATase1_CobB Type 1 gl 34.8 1.5E+02 0.0032 27.4 7.2 67 98-167 6-83 (198)
144 PRK08599 coproporphyrinogen II 34.6 1.6E+02 0.0035 30.0 8.0 96 107-218 99-197 (377)
145 PLN02960 alpha-amylase 34.6 73 0.0016 36.6 5.8 94 103-202 414-549 (897)
146 PRK07379 coproporphyrinogen II 34.5 2E+02 0.0043 29.8 8.8 105 107-227 114-221 (400)
147 PRK08195 4-hyroxy-2-oxovalerat 34.1 1.3E+02 0.0028 30.6 7.1 68 108-203 91-158 (337)
148 KOG1065 Maltase glucoamylase a 33.7 1.7E+02 0.0036 33.3 8.2 105 109-219 315-454 (805)
149 TIGR02100 glgX_debranch glycog 33.6 92 0.002 34.9 6.4 55 111-165 190-265 (688)
150 PRK14507 putative bifunctional 33.4 61 0.0013 39.9 5.2 65 104-168 757-832 (1693)
151 COG5520 O-Glycosyl hydrolase [ 33.2 1.2E+02 0.0027 31.1 6.5 94 116-217 77-181 (433)
152 cd06604 GH31_glucosidase_II_Ma 32.8 2E+02 0.0044 28.9 8.3 67 148-217 67-163 (339)
153 smart00729 Elp3 Elongator prot 32.7 2.4E+02 0.0052 24.9 8.1 57 106-165 98-157 (216)
154 PRK10150 beta-D-glucuronidase; 32.6 46 0.00099 36.4 3.8 23 406-429 489-511 (604)
155 cd07947 DRE_TIM_Re_CS Clostrid 32.2 1.4E+02 0.0031 29.4 6.9 59 107-165 76-135 (279)
156 PRK13398 3-deoxy-7-phosphohept 32.1 1.5E+02 0.0032 29.1 6.9 69 100-171 36-104 (266)
157 PF00682 HMGL-like: HMGL-like 31.7 1E+02 0.0022 29.1 5.6 79 108-200 66-149 (237)
158 cd06565 GH20_GcnA-like Glycosy 31.3 1.6E+02 0.0035 29.2 7.2 61 107-174 19-86 (301)
159 PLN02389 biotin synthase 30.5 1.4E+02 0.0029 31.0 6.6 57 106-165 176-233 (379)
160 PF04055 Radical_SAM: Radical 28.8 88 0.0019 26.5 4.3 52 108-161 90-143 (166)
161 PRK12330 oxaloacetate decarbox 28.7 1.9E+02 0.0042 31.1 7.6 96 108-217 100-214 (499)
162 PRK12677 xylose isomerase; Pro 28.3 4.4E+02 0.0095 27.3 10.0 90 107-203 33-128 (384)
163 TIGR01211 ELP3 histone acetylt 28.1 2.4E+02 0.0052 30.6 8.2 107 108-230 206-317 (522)
164 PRK09249 coproporphyrinogen II 28.0 1.8E+02 0.004 30.5 7.3 93 107-215 150-245 (453)
165 PRK05628 coproporphyrinogen II 27.9 2.6E+02 0.0056 28.5 8.2 104 107-226 107-213 (375)
166 cd02742 GH20_hexosaminidase Be 27.8 1.6E+02 0.0035 29.2 6.5 62 107-174 18-98 (303)
167 TIGR01232 lacD tagatose 1,6-di 27.5 2.4E+02 0.0053 28.5 7.6 60 110-172 111-170 (325)
168 PF04551 GcpE: GcpE protein; 27.2 1.9E+02 0.0041 29.7 6.8 88 97-198 76-170 (359)
169 TIGR00538 hemN oxygen-independ 27.1 1.1E+02 0.0023 32.4 5.3 77 107-199 150-229 (455)
170 PLN03153 hypothetical protein; 26.7 51 0.0011 35.4 2.8 67 154-229 327-400 (537)
171 COG3534 AbfA Alpha-L-arabinofu 26.6 4.4E+02 0.0095 28.1 9.4 94 107-215 50-175 (501)
172 PRK11572 copper homeostasis pr 26.4 1.4E+02 0.0031 29.0 5.6 43 103-154 71-113 (248)
173 cd06568 GH20_SpHex_like A subg 26.3 1.4E+02 0.0031 30.1 5.9 71 98-174 9-101 (329)
174 cd06595 GH31_xylosidase_XylS-l 26.2 2.2E+02 0.0048 28.0 7.1 70 147-217 76-163 (292)
175 TIGR01531 glyc_debranch glycog 26.1 2.5E+02 0.0054 34.2 8.3 70 102-176 129-219 (1464)
176 PF03932 CutC: CutC family; I 26.0 1.8E+02 0.0039 27.3 6.1 43 104-155 71-113 (201)
177 PF04646 DUF604: Protein of un 25.6 29 0.00063 33.8 0.7 72 153-227 76-147 (255)
178 cd00927 Cyt_c_Oxidase_VIc Cyto 25.6 36 0.00077 26.6 1.0 19 101-119 46-66 (70)
179 PRK09432 metF 5,10-methylenete 25.6 2.2E+02 0.0049 28.3 7.0 74 145-218 189-284 (296)
180 PF02065 Melibiase: Melibiase; 25.6 2.9E+02 0.0062 28.8 8.0 95 107-202 60-183 (394)
181 PRK13209 L-xylulose 5-phosphat 25.5 5.8E+02 0.012 24.4 9.9 52 107-162 23-74 (283)
182 PRK05660 HemN family oxidoredu 25.4 2.7E+02 0.0059 28.5 7.8 93 108-216 107-202 (378)
183 PRK00230 orotidine 5'-phosphat 25.2 94 0.002 29.6 4.1 61 99-172 7-67 (230)
184 TIGR02631 xylA_Arthro xylose i 25.1 4.1E+02 0.0089 27.4 9.1 92 106-204 33-130 (382)
185 PF04914 DltD_C: DltD C-termin 24.9 2.2E+02 0.0047 24.9 6.0 57 144-204 35-91 (130)
186 PF13812 PPR_3: Pentatricopept 24.8 53 0.0012 20.3 1.6 15 147-161 20-34 (34)
187 PF01261 AP_endonuc_2: Xylose 24.7 74 0.0016 28.6 3.2 63 103-165 69-132 (213)
188 COG5016 Pyruvate/oxaloacetate 24.5 2.8E+02 0.0061 29.1 7.4 52 103-167 91-147 (472)
189 PRK13347 coproporphyrinogen II 24.3 1.4E+02 0.003 31.5 5.5 86 107-209 151-240 (453)
190 PRK08208 coproporphyrinogen II 23.8 2.9E+02 0.0064 28.8 7.8 92 107-215 140-235 (430)
191 PLN02925 4-hydroxy-3-methylbut 23.7 2.2E+02 0.0048 31.9 7.0 53 147-200 212-264 (733)
192 PF04028 DUF374: Domain of unk 23.4 2.3E+02 0.0051 22.1 5.3 40 112-165 27-66 (74)
193 PRK09856 fructoselysine 3-epim 23.4 1E+02 0.0022 29.6 4.1 62 102-164 87-148 (275)
194 PRK09282 pyruvate carboxylase 23.3 2.7E+02 0.0059 30.6 7.7 93 107-217 98-211 (592)
195 cd00019 AP2Ec AP endonuclease 23.0 4.8E+02 0.01 25.0 8.8 54 105-163 10-64 (279)
196 TIGR00674 dapA dihydrodipicoli 22.9 3.4E+02 0.0074 26.5 7.7 62 136-211 13-74 (285)
197 cd02874 GH18_CFLE_spore_hydrol 22.8 3.5E+02 0.0075 26.6 7.9 84 111-202 16-103 (313)
198 cd06413 GH25_muramidase_1 Unch 22.5 3.1E+02 0.0068 25.0 7.0 21 187-207 109-129 (191)
199 PRK10426 alpha-glucosidase; Pr 22.5 6.4E+02 0.014 28.0 10.5 105 107-214 223-364 (635)
200 TIGR02102 pullulan_Gpos pullul 22.5 2E+02 0.0043 34.2 6.7 99 104-202 479-635 (1111)
201 cd01335 Radical_SAM Radical SA 22.3 1.3E+02 0.0028 26.2 4.3 58 107-165 87-145 (204)
202 TIGR00542 hxl6Piso_put hexulos 22.3 6.2E+02 0.014 24.2 9.4 82 107-199 18-101 (279)
203 PRK06294 coproporphyrinogen II 22.2 4.8E+02 0.01 26.6 8.9 94 107-217 102-199 (370)
204 PF01055 Glyco_hydro_31: Glyco 22.1 3.7E+02 0.0081 27.9 8.2 108 107-217 45-184 (441)
205 PRK00042 tpiA triosephosphate 22.1 1.7E+02 0.0038 28.4 5.3 55 94-165 72-126 (250)
206 PRK01060 endonuclease IV; Prov 21.8 3.6E+02 0.0077 25.9 7.6 50 107-161 14-63 (281)
207 cd06589 GH31 The enzymes of gl 21.7 2.8E+02 0.0061 26.7 6.8 89 108-217 27-120 (265)
208 TIGR01589 A_thal_3526 uncharac 21.6 1.4E+02 0.003 22.3 3.5 36 148-194 19-55 (57)
209 PRK09936 hypothetical protein; 21.6 8.1E+02 0.018 24.5 9.8 62 107-176 40-101 (296)
210 TIGR00423 radical SAM domain p 21.5 2.8E+02 0.0061 27.4 6.9 53 107-165 106-165 (309)
211 PF09713 A_thal_3526: Plant pr 21.1 1E+02 0.0023 22.7 2.7 35 148-193 16-51 (54)
212 PRK14042 pyruvate carboxylase 21.1 3.5E+02 0.0077 29.8 8.0 100 103-217 89-211 (596)
213 PRK08446 coproporphyrinogen II 20.9 4.4E+02 0.0095 26.6 8.3 93 108-216 98-193 (350)
214 PRK08255 salicylyl-CoA 5-hydro 20.9 8.7E+02 0.019 27.5 11.3 145 129-297 459-640 (765)
215 PRK06256 biotin synthase; Vali 20.8 1.7E+02 0.0037 29.2 5.2 57 106-165 150-207 (336)
216 TIGR00676 fadh2 5,10-methylene 20.7 3E+02 0.0065 26.8 6.7 76 139-217 167-264 (272)
217 PRK05904 coproporphyrinogen II 20.6 3.8E+02 0.0082 27.3 7.7 93 108-216 103-198 (353)
218 PRK09997 hydroxypyruvate isome 20.6 2.4E+02 0.0053 26.8 6.1 63 106-171 86-151 (258)
219 PF11997 DUF3492: Domain of un 20.3 93 0.002 30.5 3.1 22 405-429 185-206 (268)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-121 Score=934.75 Aligned_cols=386 Identities=57% Similarity=1.048 Sum_probs=359.0
Q ss_pred CCCCCcCCCCCCCCeehhccchhhccCCcCCCCCcCchhhhcccc-CCccccCCCCCCCcccccccHHHHHHHHhCCCCE
Q 014137 43 DTGGLSRESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKK-PGIVANNATGDVSVDQYHRYKEDVDIMANLNFDA 121 (430)
Q Consensus 43 ~~~~~~~~~fP~~FlwG~Atsa~QvEG~~~~dgkg~s~WD~~~~~-~~~i~~~~~~d~A~d~Y~~y~eDi~l~~~lG~~~ 121 (430)
....+.|.+||+||+||+||||||+|||+++||||+|+||+|+|. |+++.+++++|+|||+||||+|||+|||+||+++
T Consensus 28 ~~~~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~a 107 (524)
T KOG0626|consen 28 KTTKFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDA 107 (524)
T ss_pred ccCcccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCe
Confidence 344677899999999999999999999999999999999999987 6688889999999999999999999999999999
Q ss_pred EEeccCCcccccCCC--CCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChHhHHHHHHHHHHHHH
Q 014137 122 YRFSISWSRIFPYGT--GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFK 199 (430)
Q Consensus 122 ~Rfsi~Wsri~P~~~--g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~ 199 (430)
||||||||||+|.|+ +.+|++||+||++||++|+++||+|+|||+|||+||+|+++||||+|++++++|.+||+.||+
T Consensus 108 fRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~ 187 (524)
T KOG0626|consen 108 FRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQ 187 (524)
T ss_pred EEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHH
Confidence 999999999999997 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcceeEeeccCcchhhccccCCCcCCCCCCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCceEE
Q 014137 200 TFGDRVKNWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIG 279 (430)
Q Consensus 200 ~fgd~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~~~~g~IG 279 (430)
+|||+||+|+|||||++++..||..|..|||||+.+..+|..|+|++++|+|.||||||||+||++||++++..|+|+||
T Consensus 188 ~fGDrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IG 267 (524)
T KOG0626|consen 188 EFGDRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIG 267 (524)
T ss_pred HhcccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEe
Confidence 99999999999999999999999999999999998667999999999999999999999999999999999999999999
Q ss_pred EEecCcccccCCCCHHHHHHHHHHHHHhcccccceeeecccChhhHHhhhcCCCCCCHHHHhhhcCCcceEEeeccccee
Q 014137 280 ILLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKEEVKMVKGSIDFVGINQYTAYY 359 (430)
Q Consensus 280 i~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~lp~ft~~d~~~ikgs~DFiGiNyYts~~ 359 (430)
|++...|++|.+++++|.+||+|+.+|..+|+++|++.|+||+.|++.+++|||.||++|++.|||+.||+|||||++.+
T Consensus 268 i~~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~ 347 (524)
T KOG0626|consen 268 IALSARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRY 347 (524)
T ss_pred EEEeeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhh
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred eeCCCCC-CCCCCCCcCCCccccccccCC-ccCCCCCCCCCCccChHHHHHHHHHHHHHcCCCcEEEecCCCC
Q 014137 360 MYDPHLK-QPKQVGYQQDWNAGFAYEKNG-VPIGPRANSYWLYNVPWGMYKALMYIKGHYGNPTVILSENGTS 430 (430)
Q Consensus 360 v~~~~~~-~~~~~~~~~d~~~~~~~~~~g-~p~~~~~~~~W~~i~P~GLr~~L~~i~~rY~~ppI~ITENG~~ 430 (430)
|+..+.. ....+.+..|..+.. ..++ .+.++.+.+.|+.++|+|||++|++++++|+||||||||||++
T Consensus 348 ~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~ 418 (524)
T KOG0626|consen 348 VKHLKPPPDPSQPGWSTDSGVDW--TLEGNDLIGPKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFD 418 (524)
T ss_pred hhccCCCCCCCCcccccccceee--eecccccccccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCC
Confidence 9876542 222334445554433 2233 4566677788999999999999999999999999999999985
No 2
>PLN02998 beta-glucosidase
Probab=100.00 E-value=3.8e-109 Score=864.96 Aligned_cols=379 Identities=50% Similarity=0.923 Sum_probs=331.6
Q ss_pred CCCCCcCCCCCCCCeehhccchhhccCCcCCCCCcCchhhhccccCCccccCCCCCCCcccccccHHHHHHHHhCCCCEE
Q 014137 43 DTGGLSRESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAY 122 (430)
Q Consensus 43 ~~~~~~~~~fP~~FlwG~Atsa~QvEG~~~~dgkg~s~WD~~~~~~~~i~~~~~~d~A~d~Y~~y~eDi~l~~~lG~~~~ 122 (430)
++..+++.+||++|+||+|||||||||++++||||+|+||.|+| ++. .+..++++||||||||+|||+|||+||+++|
T Consensus 22 ~~~~~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~-~~~-~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~Y 99 (497)
T PLN02998 22 SSLKYSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAH-AGH-SGVAAGNVACDQYHKYKEDVKLMADMGLEAY 99 (497)
T ss_pred ccccCccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc-cCc-CCCCCCcccccHHHhhHHHHHHHHHcCCCeE
Confidence 33446677899999999999999999999999999999999998 442 2225889999999999999999999999999
Q ss_pred EeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChHhHHHHHHHHHHHHHHhC
Q 014137 123 RFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFG 202 (430)
Q Consensus 123 Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~fg 202 (430)
||||+||||+|+|+|.+|++||+||+++||+|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.||++||
T Consensus 100 RfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fg 179 (497)
T PLN02998 100 RFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKEFG 179 (497)
T ss_pred EeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHHhc
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEeeccCcchhhccccCCCcCCCCCCCcCCC-cccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEE
Q 014137 203 DRVKNWMTFNEPRVVAALGYDNGFFAPGRCSKAFG-NCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGIL 281 (430)
Q Consensus 203 d~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~-~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~~~~g~IGi~ 281 (430)
|+|++|+|||||++++..||..|.+|||+++...+ .|..+++.++.++++||+++|||+||++||+.++..|+++|||+
T Consensus 180 drVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~ 259 (497)
T PLN02998 180 DRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGIS 259 (497)
T ss_pred CcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEE
Confidence 99999999999999999999999999997542111 36666667789999999999999999999998765678999999
Q ss_pred ecCcccccCCCCHHHHHHHHHHHHHhcccccceeeecccChhhHHhhhcCCCCCCHHHHhhhcCCcceEEeecccceeee
Q 014137 282 LDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKEEVKMVKGSIDFVGINQYTAYYMY 361 (430)
Q Consensus 282 ~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~lp~ft~~d~~~ikgs~DFiGiNyYts~~v~ 361 (430)
++..+++|.+++|+|++||++.+++.++||+||+++|+||+.|++.+++++|.||++|+++|++++||||||||+|.+|+
T Consensus 260 ~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~ 339 (497)
T PLN02998 260 VYTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVK 339 (497)
T ss_pred EeCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCC-CCCCCCCcCCCccccccccCCccCCCCCC-CCCCccChHHHHHHHHHHHHHcCCCcEEEecCCCC
Q 014137 362 DPHLK-QPKQVGYQQDWNAGFAYEKNGVPIGPRAN-SYWLYNVPWGMYKALMYIKGHYGNPTVILSENGTS 430 (430)
Q Consensus 362 ~~~~~-~~~~~~~~~d~~~~~~~~~~g~p~~~~~~-~~W~~i~P~GLr~~L~~i~~rY~~ppI~ITENG~~ 430 (430)
..+.. .+....+..+..... .+.++.+. ++| +|+|+|||.+|+++++||++|||||||||++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~w-~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~ 403 (497)
T PLN02998 340 DNSSSLKPNLQDFNTDIAVEM------TLVGNTSIENEY-ANTPWSLQQILLYVKETYGNPPVYILENGQM 403 (497)
T ss_pred cCCCcCCCCcccccccccccc------ccCCCcCCCCCC-EEChHHHHHHHHHHHHHcCCCCEEEeCCCCc
Confidence 53321 110011111100000 01122333 455 9999999999999999999988999999985
No 3
>PLN02849 beta-glucosidase
Probab=100.00 E-value=4e-109 Score=865.94 Aligned_cols=372 Identities=47% Similarity=0.889 Sum_probs=330.7
Q ss_pred CCCcCCCCCCCCeehhccchhhccCCcCCCCCcCchhhhccccCCccccCCCCCCCcccccccHHHHHHHHhCCCCEEEe
Q 014137 45 GGLSRESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRF 124 (430)
Q Consensus 45 ~~~~~~~fP~~FlwG~Atsa~QvEG~~~~dgkg~s~WD~~~~~~~~i~~~~~~d~A~d~Y~~y~eDi~l~~~lG~~~~Rf 124 (430)
..+++.+||+||+||+|||||||||++++||||+|+||.|+|.++ +.++++||||||||+|||+|||+||+++|||
T Consensus 23 ~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~~----~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRf 98 (503)
T PLN02849 23 SDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSRN----MSNGDIACDGYHKYKEDVKLMVETGLDAFRF 98 (503)
T ss_pred CCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccCC----CCCCCccccHHHhHHHHHHHHHHcCCCeEEE
Confidence 445667899999999999999999999999999999999998753 4688999999999999999999999999999
Q ss_pred ccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChHhHHHHHHHHHHHHHHhCCc
Q 014137 125 SISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDR 204 (430)
Q Consensus 125 si~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~fgd~ 204 (430)
||+||||+|+|+|.+|++||+||+++||+|+++||+|||||+|||+|+||+++||||+|++++++|++||+.||++|||+
T Consensus 99 SIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDr 178 (503)
T PLN02849 99 SISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFGNH 178 (503)
T ss_pred eccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcCc
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEeeccCcchhhccccCCCcCCCCCCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecC
Q 014137 205 VKNWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDF 284 (430)
Q Consensus 205 v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~~~~g~IGi~~~~ 284 (430)
||+|+|||||++++..||..|.+|||+++.....|..+++.++.+++.||+++|||+||++||++++..|+++||++++.
T Consensus 179 Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~ 258 (503)
T PLN02849 179 VKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFA 258 (503)
T ss_pred CCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEEC
Confidence 99999999999999999999999999754211135555566789999999999999999999997654568999999999
Q ss_pred cccccCCCCHHHHHHHHHHHHHhcccccceeeecccChhhHHhhhcCCCCCCHHHHhhhcCCcceEEeecccceeeeCCC
Q 014137 285 VWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKEEVKMVKGSIDFVGINQYTAYYMYDPH 364 (430)
Q Consensus 285 ~~~~P~~~~~~D~~Aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~lp~ft~~d~~~ikgs~DFiGiNyYts~~v~~~~ 364 (430)
.+++|.+++|+|++||++.+++.++||+||+++|+||+.|++.+++++|.|+++|+++|++++||||||||++.+|+...
T Consensus 259 ~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~ 338 (503)
T PLN02849 259 LGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTNIK 338 (503)
T ss_pred ceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997532
Q ss_pred CCC--CCCCCCcCCCccccccccCCccCCCCCCCCCCccChHHHHHHHHHHHHHcCCCcEEEecCCCC
Q 014137 365 LKQ--PKQVGYQQDWNAGFAYEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYGNPTVILSENGTS 430 (430)
Q Consensus 365 ~~~--~~~~~~~~d~~~~~~~~~~g~p~~~~~~~~W~~i~P~GLr~~L~~i~~rY~~ppI~ITENG~~ 430 (430)
... ...+.+... . +.+..+.++++| +|+|+|||++|+++++||++|||||||||++
T Consensus 339 ~~~~~~~~~~~~~~--------~-~~~~~~~~~~gw-~i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~ 396 (503)
T PLN02849 339 IKPSLSGNPDFYSD--------M-GVSLGKFSAFEY-AVAPWAMESVLEYIKQSYGNPPVYILENGTP 396 (503)
T ss_pred CCCCCCCCCccccc--------c-CCCCCccCCCCC-eEChHHHHHHHHHHHHhcCCCCEEEeCCCCC
Confidence 110 000111000 0 112223456787 9999999999999999999988999999986
No 4
>PLN02814 beta-glucosidase
Probab=100.00 E-value=1.2e-108 Score=862.55 Aligned_cols=372 Identities=43% Similarity=0.824 Sum_probs=329.6
Q ss_pred CcCCCCCCCCeehhccchhhccCCcCCCCCcCchhhhccccCCccccCCCCCCCcccccccHHHHHHHHhCCCCEEEecc
Q 014137 47 LSRESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSI 126 (430)
Q Consensus 47 ~~~~~fP~~FlwG~Atsa~QvEG~~~~dgkg~s~WD~~~~~~~~i~~~~~~d~A~d~Y~~y~eDi~l~~~lG~~~~Rfsi 126 (430)
+++.+||++|+||+|||||||||++++||||+|+||+|++. .+++++++||||||||+|||+|||+||+++|||||
T Consensus 23 ~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~----~~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSI 98 (504)
T PLN02814 23 FTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHC----YNGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSI 98 (504)
T ss_pred cccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeec----cCCCCCCccccHHHhhHHHHHHHHHcCCCEEEEec
Confidence 55668999999999999999999999999999999999874 23568999999999999999999999999999999
Q ss_pred CCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChHhHHHHHHHHHHHHHHhCCcce
Q 014137 127 SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVK 206 (430)
Q Consensus 127 ~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~fgd~v~ 206 (430)
+||||+|+|+|.+|++||+||+++||+|+++||+|||||+|||+|+||+++||||+|++++++|++||+.||++|||+||
T Consensus 99 sWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 99 SWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred cHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccCcchhhccccCCCcCCCCCCCcCC-CcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecCc
Q 014137 207 NWMTFNEPRVVAALGYDNGFFAPGRCSKAF-GNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFV 285 (430)
Q Consensus 207 ~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~-~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~~~~g~IGi~~~~~ 285 (430)
+|+|||||++++..||..|.. ||+++... ..|..+++.++.++++||+++|||+||++||++++..|+++|||+++..
T Consensus 179 ~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~ 257 (504)
T PLN02814 179 LWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAF 257 (504)
T ss_pred EEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCc
Confidence 999999999999999999985 88765311 1565556667899999999999999999999987666789999999999
Q ss_pred ccccCCCCHHHHHHHHHHHHHhcccccceeeecccChhhHHhhhcCCCCCCHHHHhhhcCCcceEEeecccceeeeCCCC
Q 014137 286 WYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKEEVKMVKGSIDFVGINQYTAYYMYDPHL 365 (430)
Q Consensus 286 ~~~P~~~~~~D~~Aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~lp~ft~~d~~~ikgs~DFiGiNyYts~~v~~~~~ 365 (430)
+++|.+++|+|++||++++++.++||+||+++|+||+.|++.+++++|.||++|+++|+|++||||||||++.+|+..+.
T Consensus 258 ~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~ 337 (504)
T PLN02814 258 GLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPA 337 (504)
T ss_pred eeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999975321
Q ss_pred CC---CCCCCCcCCCccccccccCCccCCCCCCCCCCccChHHHHHHHHHHHHHcCCCcEEEecCCCC
Q 014137 366 KQ---PKQVGYQQDWNAGFAYEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYGNPTVILSENGTS 430 (430)
Q Consensus 366 ~~---~~~~~~~~d~~~~~~~~~~g~p~~~~~~~~W~~i~P~GLr~~L~~i~~rY~~ppI~ITENG~~ 430 (430)
.. .....+..+.... ..+.++.++++| +|+|+|||.+|+++++||++|||||||||++
T Consensus 338 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~gW-ei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~ 398 (504)
T PLN02814 338 PSIFPSMNEGFFTDMGAY------IISAGNSSFFEF-DATPWGLEGILEHIKQSYNNPPIYILENGMP 398 (504)
T ss_pred CCcccccCCCcccccccc------cCCCCCcCCCCC-eECcHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 10 0000111110000 012335677888 9999999999999999999988999999985
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-104 Score=806.63 Aligned_cols=358 Identities=38% Similarity=0.688 Sum_probs=322.4
Q ss_pred CCCCCCCeehhccchhhccCCcCCCCCcCchhhhccc--cCCccccCCCCCCCcccccccHHHHHHHHhCCCCEEEeccC
Q 014137 50 ESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAK--KPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSIS 127 (430)
Q Consensus 50 ~~fP~~FlwG~Atsa~QvEG~~~~dgkg~s~WD~~~~--~~~~i~~~~~~d~A~d~Y~~y~eDi~l~~~lG~~~~Rfsi~ 127 (430)
.+||++|+||+||||+|+|||+++||||+|+||.|++ .|+++..+.++++||||||||+|||+|||+||+|+|||||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 4799999999999999999999999999999999999 46777778899999999999999999999999999999999
Q ss_pred CcccccCCCC-CCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChHhHHHHHHHHHHHHHHhCCcce
Q 014137 128 WSRIFPYGTG-KVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVK 206 (430)
Q Consensus 128 Wsri~P~~~g-~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~fgd~v~ 206 (430)
||||+|++++ .+|++||+||+++||+|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.||++|||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 9999999975 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccCcchhhccccCCCcCCCCCCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecCcc
Q 014137 207 NWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFVW 286 (430)
Q Consensus 207 ~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~~~~g~IGi~~~~~~ 286 (430)
+|+||||||+++..||..|.+||+..+. +..+||+||+++|||+|++++|+..+. .+|||+++..+
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~~~-----------~~~~qa~hh~~lA~A~avk~~~~~~~~---~kIG~~~~~~p 227 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIVDP-----------KAAYQVAHHMLLAHALAVKAIKKINPK---GKVGIILNLTP 227 (460)
T ss_pred EEEEecchhhhhcccccccccCCCccCH-----------HHHHHHHHHHHHHHHHHHHHHHhhCCc---CceEEEeccCc
Confidence 9999999999999999999999987652 678999999999999999999998652 39999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHhcccccceeeecccChhhHHhhhcC--CCCCCHHHHhhhc-CCcceEEeeccc-ceeeeC
Q 014137 287 YEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNR--LPKFTKEEVKMVK-GSIDFVGINQYT-AYYMYD 362 (430)
Q Consensus 287 ~~P~~~~~~D~~Aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~--lp~ft~~d~~~ik-gs~DFiGiNyYt-s~~v~~ 362 (430)
.||.+++|+|+.||+.++++.+++|+||+++|.||..+.+.+++. +|.++++|+++|| +++||||||||+ +++++.
T Consensus 228 ~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~ 307 (460)
T COG2723 228 AYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAA 307 (460)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeec
Confidence 999999999999999999999999999999999999999999876 7999999999997 689999999999 555554
Q ss_pred CCCCCCCCCCCcCCCccccccccCCccCCCCCCCCCCccChHHHHHHHHHHHHHcCCCcEEEecCCCC
Q 014137 363 PHLKQPKQVGYQQDWNAGFAYEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYGNPTVILSENGTS 430 (430)
Q Consensus 363 ~~~~~~~~~~~~~d~~~~~~~~~~g~p~~~~~~~~W~~i~P~GLr~~L~~i~~rY~~ppI~ITENG~~ 430 (430)
.+... ..+..+... .... .|..+.+++|| +|||+|||.+|+++++||+ +||||||||+|
T Consensus 308 ~~~~~---~~~~~~~~~--~~~~--~p~~~~sdwGW-eI~P~GL~~~l~~~~~rY~-~p~fItENG~G 366 (460)
T COG2723 308 EPRYV---SGYGPGGFF--TSVP--NPGLEVSDWGW-EIYPKGLYDILEKLYERYG-IPLFITENGLG 366 (460)
T ss_pred cCCcC---Ccccccccc--cccC--CCCCcccCCCc-eeChHHHHHHHHHHHHHhC-CCeEEecCCCC
Confidence 43211 111111100 0111 25556778888 9999999999999999999 67999999986
No 6
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=1.5e-103 Score=821.35 Aligned_cols=361 Identities=33% Similarity=0.572 Sum_probs=312.3
Q ss_pred CCCCCCCeehhccchhhccCCcCCCCCcCchhhhccccCCccccCCCCCCCcccccccHHHHHHHHhCCCCEEEeccCCc
Q 014137 50 ESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWS 129 (430)
Q Consensus 50 ~~fP~~FlwG~Atsa~QvEG~~~~dgkg~s~WD~~~~~~~~i~~~~~~d~A~d~Y~~y~eDi~l~~~lG~~~~Rfsi~Ws 129 (430)
.+||++|+||+|||||||||++++||||+|+||+|++.++++ ++++||||||||+|||+|||+||+++|||||+||
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~~----~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWs 78 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYWF----TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWS 78 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCCC----CCCcccchhhhhHHHHHHHHHhCCCEEEeeccHh
Confidence 469999999999999999999999999999999999877653 7899999999999999999999999999999999
Q ss_pred ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChHhHHHHHHHHHHHHHHhCCcceeEe
Q 014137 130 RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWM 209 (430)
Q Consensus 130 ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~fgd~v~~w~ 209 (430)
||+|+|+|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++ |||+|++++++|++||+.||++||| |++|+
T Consensus 79 RI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~ 156 (469)
T PRK13511 79 RIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWT 156 (469)
T ss_pred hcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEE
Confidence 999998889999999999999999999999999999999999999986 9999999999999999999999999 99999
Q ss_pred eccCcchhhccccCCCcCCCCCCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecCccccc
Q 014137 210 TFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFVWYEP 289 (430)
Q Consensus 210 t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~~~~g~IGi~~~~~~~~P 289 (430)
|||||++++..||..|.+|||++.. .++.++++||+++|||+||++||++. |+++||++++..+++|
T Consensus 157 T~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~~~hn~llAHa~A~~~~~~~~---~~g~IGi~~~~~~~~P 223 (469)
T PRK13511 157 TFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVAHARAVKLFKDKG---YKGEIGVVHALPTKYP 223 (469)
T ss_pred EccchhhhhhcchhhcccCCCCCcc----------HHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceEee
Confidence 9999999999999999999996431 14689999999999999999999973 5799999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHhcccccceeeecccChhhHHhhhc------CCCCCCHHHHhhhc---CCcceEEeeccccee
Q 014137 290 LT-RSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGN------RLPKFTKEEVKMVK---GSIDFVGINQYTAYY 359 (430)
Q Consensus 290 ~~-~~~~D~~Aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~------~lp~ft~~d~~~ik---gs~DFiGiNyYts~~ 359 (430)
.+ ++++|++||++.+++.++||+||+++|+||+.|++.+++ ..|.||++|+++|| +++||||||||+|.+
T Consensus 224 ~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~ 303 (469)
T PRK13511 224 IDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDW 303 (469)
T ss_pred CCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcce
Confidence 99 899999999999999999999999999999999988742 12489999999996 468999999999999
Q ss_pred eeCCCCCCCCCCCCcCCCccc---cc--cccCCccCCCCCCCCCCccChHHHHHHHHHHHHHcCC-CcEEEecCCCC
Q 014137 360 MYDPHLKQPKQVGYQQDWNAG---FA--YEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYGN-PTVILSENGTS 430 (430)
Q Consensus 360 v~~~~~~~~~~~~~~~d~~~~---~~--~~~~g~p~~~~~~~~W~~i~P~GLr~~L~~i~~rY~~-ppI~ITENG~~ 430 (430)
|+..+...........+.... .. ......+..+.++++| +|+|+||+.+|++++++|++ |||||||||++
T Consensus 304 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~ 379 (469)
T PRK13511 304 MRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWDW-IIYPQGLYDQLMRIKKDYPNYKKIYITENGLG 379 (469)
T ss_pred eecCCCccccccCCCCccccccccccCccccccCCCCCcCCCCC-eECcHHHHHHHHHHHHHcCCCCCEEEecCCcC
Confidence 975321100000000000000 00 0000012234577888 99999999999999999998 67999999985
No 7
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=3.4e-103 Score=818.80 Aligned_cols=356 Identities=28% Similarity=0.473 Sum_probs=310.4
Q ss_pred CCCCCCCeehhccchhhccCCcCCCCCcCchhhhccccCCccc--c----------C--CCCCCCcccccccHHHHHHHH
Q 014137 50 ESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVA--N----------N--ATGDVSVDQYHRYKEDVDIMA 115 (430)
Q Consensus 50 ~~fP~~FlwG~Atsa~QvEG~~~~dgkg~s~WD~~~~~~~~i~--~----------~--~~~d~A~d~Y~~y~eDi~l~~ 115 (430)
.+||++|+||+||||||||||+++||||+|+||+|+|.++++. . + .++++||||||||+|||+|||
T Consensus 4 ~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm~ 83 (478)
T PRK09593 4 MPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALFA 83 (478)
T ss_pred ccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHHH
Confidence 4699999999999999999999999999999999998766541 1 1 258999999999999999999
Q ss_pred hCCCCEEEeccCCcccccCCC-CCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChHhHHHHHHHH
Q 014137 116 NLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYA 194 (430)
Q Consensus 116 ~lG~~~~Rfsi~Wsri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~~~~f~~ya 194 (430)
+||+|+|||||+||||+|+|+ |.+|++||+||+++||+|+++||+|+|||||||+|+||+++||||+|++++++|++||
T Consensus 84 ~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~YA 163 (478)
T PRK09593 84 EMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERLC 163 (478)
T ss_pred HcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHHH
Confidence 999999999999999999984 6799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcceeEeeccCcchhhccccC-CCc-CCCCCCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014137 195 DFCFKTFGDRVKNWMTFNEPRVVAALGYD-NGF-FAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQ 272 (430)
Q Consensus 195 ~~~~~~fgd~v~~w~t~NEp~~~~~~gy~-~G~-~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~ 272 (430)
+.||++|||+|++|+|||||++++..||. .|. +|||.. +..+.++++||+++|||+||++||+..
T Consensus 164 ~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~-----------~~~~~~~a~h~~llAHa~A~~~~~~~~-- 230 (478)
T PRK09593 164 RTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGEN-----------KEQVKYQAAHHELVASAIATKIAHEVD-- 230 (478)
T ss_pred HHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCc-----------hhhhHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 99999999999999999999999988876 454 366642 225689999999999999999999863
Q ss_pred cCCceEEEEecCcccccCCCCHHHHHHHHHHHHHhcccccceeeecccChhhHHhhhcC--CCCCCHHHHhhhc-CCcce
Q 014137 273 KQKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNR--LPKFTKEEVKMVK-GSIDF 349 (430)
Q Consensus 273 ~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~--lp~ft~~d~~~ik-gs~DF 349 (430)
|+++|||+++..+++|.+++++|++||++++ +.++||+||+++|+||+.|++.++++ +|.||++|+++|| |++||
T Consensus 231 -~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~DF 308 (478)
T PRK09593 231 -PENKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVDF 308 (478)
T ss_pred -CCCeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCE
Confidence 5799999999999999999999999999987 55889999999999999999999863 6889999999996 99999
Q ss_pred EEeecccceeeeCCCCCCCCCCCCcCCCccccccccCCccCCCCCCCCCCccChHHHHHHHHHHHHHcCCCcEEEecCCC
Q 014137 350 VGINQYTAYYMYDPHLKQPKQVGYQQDWNAGFAYEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYGNPTVILSENGT 429 (430)
Q Consensus 350 iGiNyYts~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~p~~~~~~~~W~~i~P~GLr~~L~~i~~rY~~ppI~ITENG~ 429 (430)
||||||||.+|+..+..... .... .. ....+ |..+.+++|| +|+|+|||.+|+++++||++| |||||||+
T Consensus 309 lGiNyYt~~~v~~~~~~~~~---~~~~-~~--~~~~~--p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~P-i~ItENG~ 378 (478)
T PRK09593 309 ISFSYYSSRVASGDPKVNEK---TAGN-IF--ASLKN--PYLKASEWGW-QIDPLGLRITLNTIWDRYQKP-MFIVENGL 378 (478)
T ss_pred EEEecccCcccccCCCCCCC---CCCC-cc--ccccC--CCcccCCCCC-EECHHHHHHHHHHHHHHcCCC-EEEEcCCC
Confidence 99999999999753311110 0000 00 00111 4445677888 999999999999999999975 99999998
Q ss_pred C
Q 014137 430 S 430 (430)
Q Consensus 430 ~ 430 (430)
+
T Consensus 379 ~ 379 (478)
T PRK09593 379 G 379 (478)
T ss_pred C
Confidence 5
No 8
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=6.3e-103 Score=815.26 Aligned_cols=357 Identities=34% Similarity=0.592 Sum_probs=311.8
Q ss_pred CCCCCCCeehhccchhhccCCcCCCCCcCchhhhccccCCccccCCCCCCCcccccccHHHHHHHHhCCCCEEEeccCCc
Q 014137 50 ESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWS 129 (430)
Q Consensus 50 ~~fP~~FlwG~Atsa~QvEG~~~~dgkg~s~WD~~~~~~~~i~~~~~~d~A~d~Y~~y~eDi~l~~~lG~~~~Rfsi~Ws 129 (430)
.+||+||+||+|||||||||++++||||+|+||.+++.+++ .++++||||||||+|||+|||+||+++|||||+||
T Consensus 2 ~~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~~----~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWs 77 (467)
T TIGR01233 2 KTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYW----YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWS 77 (467)
T ss_pred CCCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCCC----CCCCccCchhhhHHHHHHHHHHcCCCEEEEecchh
Confidence 35999999999999999999999999999999999876654 36789999999999999999999999999999999
Q ss_pred ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChHhHHHHHHHHHHHHHHhCCcceeEe
Q 014137 130 RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWM 209 (430)
Q Consensus 130 ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~fgd~v~~w~ 209 (430)
||+|+|+|.+|++||+||+++|++|+++||+|||||+|||+|+||+++ |||+|++++++|++||+.||++||| |++|+
T Consensus 78 RI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~Wi 155 (467)
T TIGR01233 78 RIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWT 155 (467)
T ss_pred hccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEE
Confidence 999998889999999999999999999999999999999999999986 9999999999999999999999998 99999
Q ss_pred eccCcchhhccccCCCcCCCCCCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecCccccc
Q 014137 210 TFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFVWYEP 289 (430)
Q Consensus 210 t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~~~~g~IGi~~~~~~~~P 289 (430)
|||||++++..||..|.+|||.+.. .++.++++||+++|||+||++||++. ++++|||+++..++||
T Consensus 156 T~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~a~hn~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P 222 (467)
T TIGR01233 156 TFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVSHARAVKLYKDKG---YKGEIGVVHALPTKYP 222 (467)
T ss_pred EecchhhhhhccchhcccCCCccch----------hHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceeEE
Confidence 9999999999999999999996321 14689999999999999999999973 5799999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHhcccccceeeecccChhhHHhhhcC------CCCCCHHHHhhh---cCCcceEEeeccccee
Q 014137 290 LT-RSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNR------LPKFTKEEVKMV---KGSIDFVGINQYTAYY 359 (430)
Q Consensus 290 ~~-~~~~D~~Aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~------lp~ft~~d~~~i---kgs~DFiGiNyYts~~ 359 (430)
.+ ++|+|++||++++++.++||+||+++|+||+.|++.++++ +|.||++|+++| ++++||||||||+|.+
T Consensus 223 ~~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~ 302 (467)
T TIGR01233 223 YDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDW 302 (467)
T ss_pred CCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEcccccee
Confidence 98 8999999999999999999999999999999999988632 378999999999 5899999999999999
Q ss_pred eeCCCCCCC-----C---CCCCcCCCccccccccCCcc-CCCCCCCCCCccChHHHHHHHHHHHHHcCC-CcEEEecCCC
Q 014137 360 MYDPHLKQP-----K---QVGYQQDWNAGFAYEKNGVP-IGPRANSYWLYNVPWGMYKALMYIKGHYGN-PTVILSENGT 429 (430)
Q Consensus 360 v~~~~~~~~-----~---~~~~~~d~~~~~~~~~~g~p-~~~~~~~~W~~i~P~GLr~~L~~i~~rY~~-ppI~ITENG~ 429 (430)
|+..+.... . ...+....... ....+ ..+.++++| +|+|+|||.+|+++++||++ |||||||||+
T Consensus 303 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~t~~gw-~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~ 377 (467)
T TIGR01233 303 MQAFDGETEIIHNGKGEKGSSKYQIKGVG----RRVAPDYVPRTDWDW-IIYPEGLYDQIMRVKNDYPNYKKIYITENGL 377 (467)
T ss_pred eccCCCccccccCCccccCcccccCCCcc----cccCCCCCCcCCCCC-eeChHHHHHHHHHHHHHcCCCCCEEEeCCCC
Confidence 975321100 0 00000000000 00011 124577788 99999999999999999997 6799999998
Q ss_pred C
Q 014137 430 S 430 (430)
Q Consensus 430 ~ 430 (430)
+
T Consensus 378 ~ 378 (467)
T TIGR01233 378 G 378 (467)
T ss_pred C
Confidence 6
No 9
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=4.2e-104 Score=825.07 Aligned_cols=360 Identities=50% Similarity=0.909 Sum_probs=315.5
Q ss_pred CCCCCCCeehhccchhhccCCcCCCCCcCchhhhccccCCccccCCCCCCCcccccccHHHHHHHHhCCCCEEEeccCCc
Q 014137 50 ESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWS 129 (430)
Q Consensus 50 ~~fP~~FlwG~Atsa~QvEG~~~~dgkg~s~WD~~~~~~~~i~~~~~~d~A~d~Y~~y~eDi~l~~~lG~~~~Rfsi~Ws 129 (430)
.+||++|+||+|||||||||++++||||+|+||.|++.|+++.+++++++||||||||+|||+|||+||+++|||||+|+
T Consensus 3 ~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~ 82 (455)
T PF00232_consen 3 KKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWS 82 (455)
T ss_dssp GGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HH
T ss_pred CCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecchh
Confidence 57999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred ccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChHhHHHHHHHHHHHHHHhCCcceeE
Q 014137 130 RIFPYG-TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNW 208 (430)
Q Consensus 130 ri~P~~-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~fgd~v~~w 208 (430)
||+|+| .|.+|++++++|+++|++|+++||+|||||+|||+|+||++ +|||+|+++++.|++||+.|+++|||+|++|
T Consensus 83 Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w 161 (455)
T PF00232_consen 83 RIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKYW 161 (455)
T ss_dssp HHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSEE
T ss_pred heeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcceE
Confidence 999998 69999999999999999999999999999999999999998 7999999999999999999999999999999
Q ss_pred eeccCcchhhccccCCCcCCCCCCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecCcccc
Q 014137 209 MTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFVWYE 288 (430)
Q Consensus 209 ~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~~~~g~IGi~~~~~~~~ 288 (430)
+|||||++++..||+.|.+|||..+ .++.++++||+++|||+||++||+++ ++++||++++..+++
T Consensus 162 ~T~NEp~~~~~~~y~~g~~~p~~~~-----------~~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~ 227 (455)
T PF00232_consen 162 ITFNEPNVFALLGYLYGGFPPGRDS-----------LKAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSPFY 227 (455)
T ss_dssp EEEETHHHHHHHHHTSSSSTTCSST-----------HHHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEEEE
T ss_pred Eeccccceeeccccccccccccccc-----------cchhhHHHhhHHHHHHHHHHHHhhcc---cceEEeccccccccC
Confidence 9999999999999999999999654 36889999999999999999999986 479999999999999
Q ss_pred cCCCCHHHH-HHHHHHHHHhcccccceeeecccChhhHHhhhcC--CCCCCHHHHhhhcCCcceEEeecccceeeeCCCC
Q 014137 289 PLTRSKADN-YAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNR--LPKFTKEEVKMVKGSIDFVGINQYTAYYMYDPHL 365 (430)
Q Consensus 289 P~~~~~~D~-~Aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~--lp~ft~~d~~~ikgs~DFiGiNyYts~~v~~~~~ 365 (430)
|.+++++|. +||++.+++.++||+||+++|+||..|++.++++ +|.||++|++.|++++||||||||++.+|+..+.
T Consensus 228 P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~ 307 (455)
T PF00232_consen 228 PLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPN 307 (455)
T ss_dssp ESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSS
T ss_pred CCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCcc
Confidence 999987766 8999999999999999999999999999999998 9999999999999999999999999999998763
Q ss_pred CCCCCCCCcCCCccccccccCCccCCCCCCCCCCccChHHHHHHHHHHHHHcCCCcEEEecCCCC
Q 014137 366 KQPKQVGYQQDWNAGFAYEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYGNPTVILSENGTS 430 (430)
Q Consensus 366 ~~~~~~~~~~d~~~~~~~~~~g~p~~~~~~~~W~~i~P~GLr~~L~~i~~rY~~ppI~ITENG~~ 430 (430)
.... ......... .... .+.++.++++| +|+|+|||++|++++++|++|||||||||++
T Consensus 308 ~~~~-~~~~~~~~~--~~~~--~~~~~~t~~gw-~i~P~Gl~~~L~~l~~~Y~~~pI~ITENG~~ 366 (455)
T PF00232_consen 308 PSSP-PSYDSDAPF--GQPY--NPGGPTTDWGW-EIYPEGLRDVLRYLKDRYGNPPIYITENGIG 366 (455)
T ss_dssp STSS-TTHEEEESE--EEEC--ETSSEBCTTST-BBETHHHHHHHHHHHHHHTSSEEEEEEE---
T ss_pred cccc-ccccCCccc--cccc--cccccccccCc-ccccchHhhhhhhhccccCCCcEEEeccccc
Confidence 2111 111010000 0001 24456788899 8999999999999999999999999999986
No 10
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=3.3e-102 Score=810.98 Aligned_cols=355 Identities=30% Similarity=0.546 Sum_probs=305.1
Q ss_pred CCCCCCeehhccchhhccCCcCCCCCcCchhhhcc---c-cCCccc----cCC--CCCCCcccccccHHHHHHHHhCCCC
Q 014137 51 SLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFA---K-KPGIVA----NNA--TGDVSVDQYHRYKEDVDIMANLNFD 120 (430)
Q Consensus 51 ~fP~~FlwG~Atsa~QvEG~~~~dgkg~s~WD~~~---~-~~~~i~----~~~--~~d~A~d~Y~~y~eDi~l~~~lG~~ 120 (430)
+||++|+||+||||||||||+++||||+|+||+|+ + .|+++. +++ ++++||||||||+|||+|||+||+|
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999998 4 255543 222 5789999999999999999999999
Q ss_pred EEEeccCCcccccCCC-CCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChHhHHHHHHHHHHHHH
Q 014137 121 AYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFK 199 (430)
Q Consensus 121 ~~Rfsi~Wsri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~ 199 (430)
+|||||+||||+|+|. |.+|++||+||+++|++|+++||+|||||+|||+|+||+++||||+|++++++|++||+.||+
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 9999999999999985 569999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcceeEeeccCcchhhcc-----ccC-CCc-CCCCCCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014137 200 TFGDRVKNWMTFNEPRVVAAL-----GYD-NGF-FAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQ 272 (430)
Q Consensus 200 ~fgd~v~~w~t~NEp~~~~~~-----gy~-~G~-~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~ 272 (430)
+|||+||+|+|||||++++.. ||. .|. +|||.. .....++++||+++|||+|++++|++.
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~-----------~~~~~~~~~h~~llAha~A~~~~~~~~-- 229 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGED-----------REQIMYQAAHYELVASALAVKTGHEIN-- 229 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCc-----------hhHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 999999999999999998776 343 343 255431 124579999999999999999999974
Q ss_pred cCCceEEEEecCcccccCCCCHHHHHHHHHHHHHhcccccceeeecccChhhHHhhhcC--CCCCCHHHHhhh-cCCcce
Q 014137 273 KQKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNR--LPKFTKEEVKMV-KGSIDF 349 (430)
Q Consensus 273 ~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~--lp~ft~~d~~~i-kgs~DF 349 (430)
++++||++++..+++|.+++|+|++||++++.+ +.||+||+++|+||+.|++.++++ .|.||++|+++| +|++||
T Consensus 230 -~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DF 307 (476)
T PRK09589 230 -PDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDY 307 (476)
T ss_pred -CCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCE
Confidence 468999999999999999999999999998855 679999999999999999999874 489999999999 599999
Q ss_pred EEeecccceeeeCCCCCCCCCCCCcCCCccccccccCCccCCCCCCCCCCccChHHHHHHHHHHHHHcCCCcEEEecCCC
Q 014137 350 VGINQYTAYYMYDPHLKQPKQVGYQQDWNAGFAYEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYGNPTVILSENGT 429 (430)
Q Consensus 350 iGiNyYts~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~p~~~~~~~~W~~i~P~GLr~~L~~i~~rY~~ppI~ITENG~ 429 (430)
||||||+|.+|+..+.. + ...+..+. ....+ |..+.++++| +|+|+|||.+|+++++||++| |||||||+
T Consensus 308 lGiNyYts~~v~~~~~~-~-~~~~~~~~----~~~~~--~~~~~~~~gw-~i~P~Gl~~~L~~~~~~Y~~P-i~ItENG~ 377 (476)
T PRK09589 308 IGFSYYMSFATKFHEDN-P-QLDYVETR----DLVSN--PYVKASEWGW-QIDPAGLRYSLNWFWDHYQLP-LFIVENGF 377 (476)
T ss_pred EEEecccCcccccCCCC-C-CCCccccc----ccccC--CCcccCCCCC-ccCcHHHHHHHHHHHHhcCCC-EEEEeCCc
Confidence 99999999999753211 1 00110100 00111 4445677888 999999999999999999975 99999998
Q ss_pred C
Q 014137 430 S 430 (430)
Q Consensus 430 ~ 430 (430)
+
T Consensus 378 ~ 378 (476)
T PRK09589 378 G 378 (476)
T ss_pred c
Confidence 6
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=2.5e-101 Score=803.86 Aligned_cols=357 Identities=29% Similarity=0.496 Sum_probs=307.1
Q ss_pred cCCCCCCCCeehhccchhhccCCcCCCCCcCchhhhcc---c-cCCccc----cC--CCCCCCcccccccHHHHHHHHhC
Q 014137 48 SRESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFA---K-KPGIVA----NN--ATGDVSVDQYHRYKEDVDIMANL 117 (430)
Q Consensus 48 ~~~~fP~~FlwG~Atsa~QvEG~~~~dgkg~s~WD~~~---~-~~~~i~----~~--~~~d~A~d~Y~~y~eDi~l~~~l 117 (430)
++.+||++|+||+||||||||||+++||||+|+||+|+ + .|+++. ++ .++++||||||||+|||+|||+|
T Consensus 2 ~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~el 81 (477)
T PRK15014 2 KKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAEM 81 (477)
T ss_pred CcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHHc
Confidence 45679999999999999999999999999999999999 4 345442 22 26789999999999999999999
Q ss_pred CCCEEEeccCCcccccCCC-CCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChHhHHHHHHHHHH
Q 014137 118 NFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADF 196 (430)
Q Consensus 118 G~~~~Rfsi~Wsri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~~~~f~~ya~~ 196 (430)
|+|+|||||+||||+|+|+ |.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.
T Consensus 82 G~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~ 161 (477)
T PRK15014 82 GFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEV 161 (477)
T ss_pred CCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 9999999999999999975 669999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcceeEeeccCcchh-----hccccCC-CcC-CCCCCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 014137 197 CFKTFGDRVKNWMTFNEPRVV-----AALGYDN-GFF-APGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQK 269 (430)
Q Consensus 197 ~~~~fgd~v~~w~t~NEp~~~-----~~~gy~~-G~~-~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~ 269 (430)
||++|||+|++|+|||||+++ +..||.. |.+ ||+.. +..+.++++||+++|||+||+++|+.
T Consensus 162 ~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~-----------~~~~~~~~~h~~llAHa~A~~~~~~~ 230 (477)
T PRK15014 162 VFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHEN-----------PEETMYQVLHHQFVASALAVKAARRI 230 (477)
T ss_pred HHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCc-----------hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987 6678874 765 44321 12468999999999999999999997
Q ss_pred hhccCCceEEEEecCcccccCCCCHHHHHHHHHHHHHhcccccceeeecccChhhHHhhhcCC--CCCCHHHHhhh-cCC
Q 014137 270 YEQKQKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRL--PKFTKEEVKMV-KGS 346 (430)
Q Consensus 270 ~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~l--p~ft~~d~~~i-kgs 346 (430)
. ++++|||+++..+++|.+++|+|++||++.+. ...||+||+++|+||+.|++.++++. |+++++|+++| +|+
T Consensus 231 ~---~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~ 306 (477)
T PRK15014 231 N---PEMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGT 306 (477)
T ss_pred C---CCCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCC
Confidence 5 46999999999999999999999999998773 23359999999999999999998864 78999999999 599
Q ss_pred cceEEeecccceeeeCCCCCCCCCCCCcCCCccccccccCCccCCCCCCCCCCccChHHHHHHHHHHHHHcCCCcEEEec
Q 014137 347 IDFVGINQYTAYYMYDPHLKQPKQVGYQQDWNAGFAYEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYGNPTVILSE 426 (430)
Q Consensus 347 ~DFiGiNyYts~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~p~~~~~~~~W~~i~P~GLr~~L~~i~~rY~~ppI~ITE 426 (430)
+||||||||||.+|+..+........+. ....+ |..+.++++| +|+|+|||.+|+++++||++| |||||
T Consensus 307 ~DFlGiNyYt~~~v~~~~~~~~~~~~~~-------~~~~~--~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~P-i~ItE 375 (477)
T PRK15014 307 CDYLGFSYYMTNAVKAEGGTGDAISGFE-------GSVPN--PYVKASDWGW-QIDPVGLRYALCELYERYQKP-LFIVE 375 (477)
T ss_pred CCEEEEcceeCeeeccCCCCCCCccccc-------cccCC--CCcccCCCCC-ccCcHHHHHHHHHHHHhcCCC-EEEeC
Confidence 9999999999999975321000000000 00111 3334567888 999999999999999999975 99999
Q ss_pred CCCC
Q 014137 427 NGTS 430 (430)
Q Consensus 427 NG~~ 430 (430)
||++
T Consensus 376 NG~~ 379 (477)
T PRK15014 376 NGFG 379 (477)
T ss_pred CCCC
Confidence 9986
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=1e-100 Score=798.10 Aligned_cols=355 Identities=27% Similarity=0.477 Sum_probs=312.5
Q ss_pred CCCCCCeehhccchhhccCCcCCCCCcCchhhhccccCCccc------------cC--CCCCCCcccccccHHHHHHHHh
Q 014137 51 SLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVA------------NN--ATGDVSVDQYHRYKEDVDIMAN 116 (430)
Q Consensus 51 ~fP~~FlwG~Atsa~QvEG~~~~dgkg~s~WD~~~~~~~~i~------------~~--~~~d~A~d~Y~~y~eDi~l~~~ 116 (430)
+||++|+||+|||||||||||++||||+|+||+|++.|+++. ++ .++++||||||||+|||+||++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 599999999999999999999999999999999999777652 12 2678999999999999999999
Q ss_pred CCCCEEEeccCCcccccCCC-CCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChHhHHHHHHHHH
Q 014137 117 LNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYAD 195 (430)
Q Consensus 117 lG~~~~Rfsi~Wsri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~~~~f~~ya~ 195 (430)
||+|+|||||+|+||+|+|+ +.+|+++|+||+++|++|+++||+|||||+|||+|+||+++||||+|++++++|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999985 56899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcceeEeeccCcchhhccccC-CCc-CCCCCCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014137 196 FCFKTFGDRVKNWMTFNEPRVVAALGYD-NGF-FAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQK 273 (430)
Q Consensus 196 ~~~~~fgd~v~~w~t~NEp~~~~~~gy~-~G~-~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~~ 273 (430)
.||++|||+|++|+||||||+++..||. .|. +|||... ..+.++++||+++|||+||+++|+++
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~-----------~~~~~~~~hn~llAHa~A~~~~~~~~--- 228 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ-----------DQVKYQAAHHELVASALATKIAHEVN--- 228 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc-----------hHhHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 9999999999999999999999999996 675 5887422 24689999999999999999999975
Q ss_pred CCceEEEEecCcccccCCCCHHHHHHHHHHHHHhcccccceeeecccChhhHHhhhcC--CCCCCHHHHhhhcCCcceEE
Q 014137 274 QKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNR--LPKFTKEEVKMVKGSIDFVG 351 (430)
Q Consensus 274 ~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~--lp~ft~~d~~~ikgs~DFiG 351 (430)
++++||++++..+++|.+++++|++||++.+ +.++||+||+++|+||+.|++.++++ +|.||++|+++|++++||||
T Consensus 229 ~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlG 307 (474)
T PRK09852 229 PQNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVS 307 (474)
T ss_pred CCCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEE
Confidence 3689999999999999999999999998877 55889999999999999999999875 79999999999999999999
Q ss_pred eecccceeeeCCCCCCCCCCCCcCCCccccccccCCccCCCCCCCCCCccChHHHHHHHHHHHHHcCCCcEEEecCCCC
Q 014137 352 INQYTAYYMYDPHLKQPKQVGYQQDWNAGFAYEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYGNPTVILSENGTS 430 (430)
Q Consensus 352 iNyYts~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~p~~~~~~~~W~~i~P~GLr~~L~~i~~rY~~ppI~ITENG~~ 430 (430)
||||+|.+|+....... .. ...... ...+ |..+.++++| +|+|+|||++|+++++||++| |||||||++
T Consensus 308 iNyYt~~~v~~~~~~~~--~~--~~~~~~--~~~~--p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~P-i~ItENG~~ 376 (474)
T PRK09852 308 FSYYASRCASAEMNANN--SS--AANVVK--SLRN--PYLQVSDWGW-GIDPLGLRITMNMMYDRYQKP-LFLVENGLG 376 (474)
T ss_pred EccccCeecccCCCCCC--CC--cCCcee--cccC--CCcccCCCCC-eeChHHHHHHHHHHHHhcCCC-EEEeCCCCC
Confidence 99999999975321100 00 000000 1111 4455677888 999999999999999999976 999999986
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=7.6e-100 Score=785.59 Aligned_cols=348 Identities=41% Similarity=0.775 Sum_probs=318.7
Q ss_pred CCCCCeehhccchhhccCCcCCCCCcCchhhhccccCCccccCCCCCCCcccccccHHHHHHHHhCCCCEEEeccCCccc
Q 014137 52 LPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRI 131 (430)
Q Consensus 52 fP~~FlwG~Atsa~QvEG~~~~dgkg~s~WD~~~~~~~~i~~~~~~d~A~d~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri 131 (430)
||++|+||+|||||||||++++||||+|+||.+++.|+++.++.++++||||||||+|||++||+||+++|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 89999999999999999999999999999999999888776777899999999999999999999999999999999999
Q ss_pred ccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChHhHHHHHHHHHHHHHHhCCcceeEeec
Q 014137 132 FPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTF 211 (430)
Q Consensus 132 ~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~ 211 (430)
+|+|+|.+|++++++|+++|++|+++||+|||||||||+|+||+++ |||.|++++++|++||+.|+++|||+|++|+||
T Consensus 81 ~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~ 159 (427)
T TIGR03356 81 FPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITL 159 (427)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEe
Confidence 9997789999999999999999999999999999999999999988 999999999999999999999999999999999
Q ss_pred cCcchhhccccCCCcCCCCCCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecCcccccCC
Q 014137 212 NEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFVWYEPLT 291 (430)
Q Consensus 212 NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~~~~g~IGi~~~~~~~~P~~ 291 (430)
|||++++..||..|.+||+.++. .+.++++||+++|||+||++||++.+ +++||++++..+++|.+
T Consensus 160 NEp~~~~~~~y~~G~~~P~~~~~-----------~~~~~~~hnll~Aha~A~~~~~~~~~---~~~IGi~~~~~~~~P~~ 225 (427)
T TIGR03356 160 NEPWCSAFLGYGLGVHAPGLRDL-----------RAALQAAHHLLLAHGLAVQALRANGP---GAQVGIVLNLTPVYPAS 225 (427)
T ss_pred cCcceecccchhhccCCCCCccH-----------HHHHHHHHHHHHHHHHHHHHHHHhCC---CCeEEEEEeCCeeeeCC
Confidence 99999999999999999985431 35799999999999999999999754 79999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcccccceeeecccChhhHHhhhcCCCCCCHHHHhhhcCCcceEEeecccceeeeCCCCCCCCCC
Q 014137 292 RSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKEEVKMVKGSIDFVGINQYTAYYMYDPHLKQPKQV 371 (430)
Q Consensus 292 ~~~~D~~Aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~lp~ft~~d~~~ikgs~DFiGiNyYts~~v~~~~~~~~~~~ 371 (430)
++|+|+.||++++++.++||+||++.|+||+.|++.++. +|.||++|+++|++++||||||||++.+|+...... .
T Consensus 226 ~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~-~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~---~ 301 (427)
T TIGR03356 226 DSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLGD-APFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTG---A 301 (427)
T ss_pred CCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhcc-CCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCC---C
Confidence 999999999999999999999999999999999999974 799999999999999999999999999997532110 0
Q ss_pred CCcCCCccccccccCCccCCCCCCCCCCccChHHHHHHHHHHHHHcCCCcEEEecCCCC
Q 014137 372 GYQQDWNAGFAYEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYGNPTVILSENGTS 430 (430)
Q Consensus 372 ~~~~d~~~~~~~~~~g~p~~~~~~~~W~~i~P~GLr~~L~~i~~rY~~ppI~ITENG~~ 430 (430)
.. . .. .+..+.++++| +|+|+|||.+|+++++||++|||||||||++
T Consensus 302 ~~-----~----~~--~~~~~~~~~gw-~i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~ 348 (427)
T TIGR03356 302 GF-----V----EV--PEGVPKTAMGW-EVYPEGLYDLLLRLKEDYPGPPIYITENGAA 348 (427)
T ss_pred Cc-----c----cc--CCCCCcCCCCC-eechHHHHHHHHHHHHhcCCCCEEEeCCCCC
Confidence 00 0 01 12234577888 9999999999999999999988999999985
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.27 E-value=1.1e-11 Score=126.89 Aligned_cols=109 Identities=23% Similarity=0.393 Sum_probs=87.4
Q ss_pred cccHHHHHHHHhCCCCEEEe-ccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhc-----
Q 014137 105 HRYKEDVDIMANLNFDAYRF-SISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKY----- 178 (430)
Q Consensus 105 ~~y~eDi~l~~~lG~~~~Rf-si~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~----- 178 (430)
.++++|+++||++|+|++|+ .++|+++||+. |++|+ ..+|++|+.+.++||++++.+.+...|.||.++|
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e-G~ydF---~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~ 85 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE-GQYDF---SWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILP 85 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT-TB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC-Ceeec---HHHHHHHHHHHhccCeEEEEecccccccchhhhcccccc
Confidence 45899999999999999996 67999999998 99998 5589999999999999999999999999998764
Q ss_pred ----------CC-----CCChHhHHHHHHHHHHHHHHhCCc--ceeEeeccCcchh
Q 014137 179 ----------NG-----LLSKRVVKDFADYADFCFKTFGDR--VKNWMTFNEPRVV 217 (430)
Q Consensus 179 ----------gg-----~~~~~~~~~f~~ya~~~~~~fgd~--v~~w~t~NEp~~~ 217 (430)
|. ..++...+.+.++++.++++|++. |-.|.+.|||...
T Consensus 86 ~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 86 VDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred cCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 11 124567888888899999999985 7889999999764
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.23 E-value=2.3e-11 Score=118.15 Aligned_cols=110 Identities=19% Similarity=0.260 Sum_probs=91.0
Q ss_pred ccHHHHHHHHhCCCCEEEeccCCcccc-cCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCC-C
Q 014137 106 RYKEDVDIMANLNFDAYRFSISWSRIF-PYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLL-S 183 (430)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~Wsri~-P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~-~ 183 (430)
..++|++.||++|+|++|+.|.|..++ |.+.+.++...+++++++|+.+.++||.+||++|+. |.|.... ++.. .
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~~ 98 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGNN 98 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTTH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccccc
Confidence 569999999999999999999998888 555457999999999999999999999999999875 6663322 2333 3
Q ss_pred hHhHHHHHHHHHHHHHHhCC--cceeEeeccCcchhh
Q 014137 184 KRVVKDFADYADFCFKTFGD--RVKNWMTFNEPRVVA 218 (430)
Q Consensus 184 ~~~~~~f~~ya~~~~~~fgd--~v~~w~t~NEp~~~~ 218 (430)
....+.|.++++.++++|++ .|..|.++|||....
T Consensus 99 ~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~ 135 (281)
T PF00150_consen 99 DTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGN 135 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTT
T ss_pred hhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccC
Confidence 45688899999999999954 588999999998753
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.04 E-value=1.1e-08 Score=99.26 Aligned_cols=82 Identities=16% Similarity=0.378 Sum_probs=71.3
Q ss_pred CCcccccCCCCCCChhhhHHHHHHHHHHHHcCCee--eeecCCCCCcHHHHHhcCCCCChHhHHHHHHHHHHHHHHhCCc
Q 014137 127 SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITP--YANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDR 204 (430)
Q Consensus 127 ~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p--~vtL~H~d~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~fgd~ 204 (430)
.|++++|++ |.+|.+. .+.+++.++++||++ .+.+.|...|.|+... + .++..+.+.+|.+.+++||+++
T Consensus 2 kW~~~ep~~-G~~n~~~---~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~-~---~~~~~~~~~~~i~~v~~ry~g~ 73 (254)
T smart00633 2 KWDSTEPSR-GQFNFSG---ADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL-S---KETLLARLENHIKTVVGRYKGK 73 (254)
T ss_pred CcccccCCC-CccChHH---HHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC-C---HHHHHHHHHHHHHHHHHHhCCc
Confidence 699999998 9999854 688999999999994 5567788899998742 2 5677899999999999999999
Q ss_pred ceeEeeccCcch
Q 014137 205 VKNWMTFNEPRV 216 (430)
Q Consensus 205 v~~w~t~NEp~~ 216 (430)
|..|.++|||..
T Consensus 74 i~~wdV~NE~~~ 85 (254)
T smart00633 74 IYAWDVVNEALH 85 (254)
T ss_pred ceEEEEeeeccc
Confidence 999999999985
No 17
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.76 E-value=8.6e-07 Score=89.08 Aligned_cols=204 Identities=19% Similarity=0.284 Sum_probs=119.8
Q ss_pred HHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCC---CCCcHHHHHhcCCCCC-
Q 014137 108 KEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYH---YDLPEALEKKYNGLLS- 183 (430)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H---~d~P~~l~~~~gg~~~- 183 (430)
++=+++||+.|+|++|+-+ | +-|...|.-| ++.-..+.++.+++||+.++++|- |.=|.--... ..|.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P-~aW~~~ 99 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKP-AAWANL 99 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCTSS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCC-ccCCCC
Confidence 4457999999999999976 3 3343214444 567899999999999999999963 2222211111 46877
Q ss_pred --hHhHHHHHHHHHHHHHHhCC---cceeEeeccCcchhhccccCCCcCCCCCCCcCCCcccCCCCCChHHHHHHHHHHH
Q 014137 184 --KRVVKDFADYADFCFKTFGD---RVKNWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILS 258 (430)
Q Consensus 184 --~~~~~~f~~ya~~~~~~fgd---~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llA 258 (430)
.+..+.-.+|.+.+.+.+++ .++++.+=||.+.-.+ +|-|+.. .+.-+-.++.|
T Consensus 100 ~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gml-------wp~g~~~--------------~~~~~a~ll~a 158 (332)
T PF07745_consen 100 SFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGML-------WPDGKPS--------------NWDNLAKLLNA 158 (332)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGEST-------BTTTCTT---------------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccccc-------CcCCCcc--------------CHHHHHHHHHH
Confidence 56788888999999888744 5888999999875332 4444321 23444456655
Q ss_pred HHHHHHHHHHHhhccCCceEEEEecCcccccCCCCHHHHHHHHHHHHHhcccccceeeecccChhhHHhhhcCCCCCCHH
Q 014137 259 HAAAVQRYRQKYEQKQKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKE 338 (430)
Q Consensus 259 Ha~a~~~~r~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~lp~ft~~ 338 (430)
-.+|| |+.. ++.+|.+.+... .|.... .||.|-+
T Consensus 159 g~~AV---r~~~---p~~kV~lH~~~~---------~~~~~~--------~~~f~~l----------------------- 192 (332)
T PF07745_consen 159 GIKAV---REVD---PNIKVMLHLANG---------GDNDLY--------RWFFDNL----------------------- 192 (332)
T ss_dssp HHHHH---HTHS---STSEEEEEES-T---------TSHHHH--------HHHHHHH-----------------------
T ss_pred HHHHH---HhcC---CCCcEEEEECCC---------CchHHH--------HHHHHHH-----------------------
Confidence 55554 4453 356776655432 121111 1222211
Q ss_pred HHhhhcCCcceEEeecccceeeeCCCCCCCCCCCCcCCCccccccccCCccCCCCCCCCCCccChHHHHHHHHHHHHHcC
Q 014137 339 EVKMVKGSIDFVGINQYTAYYMYDPHLKQPKQVGYQQDWNAGFAYEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYG 418 (430)
Q Consensus 339 d~~~ikgs~DFiGiNyYts~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~p~~~~~~~~W~~i~P~GLr~~L~~i~~rY~ 418 (430)
+.-....|.||+|||. . | .-....|+..|+.+.+||+
T Consensus 193 --~~~g~d~DviGlSyYP--------~--------------------------------w-~~~l~~l~~~l~~l~~ry~ 229 (332)
T PF07745_consen 193 --KAAGVDFDVIGLSYYP--------F--------------------------------W-HGTLEDLKNNLNDLASRYG 229 (332)
T ss_dssp --HHTTGG-SEEEEEE-S--------T--------------------------------T-ST-HHHHHHHHHHHHHHHT
T ss_pred --HhcCCCcceEEEecCC--------C--------------------------------C-cchHHHHHHHHHHHHHHhC
Confidence 1112456999999992 0 1 2255689999999999998
Q ss_pred CCcEEEecCCC
Q 014137 419 NPTVILSENGT 429 (430)
Q Consensus 419 ~ppI~ITENG~ 429 (430)
. ||+|+|.|+
T Consensus 230 K-~V~V~Et~y 239 (332)
T PF07745_consen 230 K-PVMVVETGY 239 (332)
T ss_dssp --EEEEEEE--
T ss_pred C-eeEEEeccc
Confidence 6 599999986
No 18
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.43 E-value=4.1e-07 Score=98.43 Aligned_cols=115 Identities=21% Similarity=0.329 Sum_probs=89.9
Q ss_pred ccHHHHHHHHhCCCCEEEec-cCCcccccCCCCCCChhhhHHHHHH-HHHHHHcCCeeeeec-CCCCCcHHHHHhc----
Q 014137 106 RYKEDVDIMANLNFDAYRFS-ISWSRIFPYGTGKVNWKGVAYYNQL-INYLLKRGITPYANL-YHYDLPEALEKKY---- 178 (430)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfs-i~Wsri~P~~~g~~n~~~~~~y~~~-i~~l~~~gi~p~vtL-~H~d~P~~l~~~~---- 178 (430)
.+++|++.||++|+|++|.+ ++|++++|+. |++|.. +.|.. |+.+.+.||..++.- .....|.|+.++|
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~e-G~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL 106 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPEE-GKFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEIL 106 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCccc-cccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhhe
Confidence 37899999999999999995 5999999998 999987 56666 999999999999988 7788999998876
Q ss_pred -----------CCCCChHhHH-HHHHHHHH----HHHH-hCC--cceeEeeccCcch-hhccccCC
Q 014137 179 -----------NGLLSKRVVK-DFADYADF----CFKT-FGD--RVKNWMTFNEPRV-VAALGYDN 224 (430)
Q Consensus 179 -----------gg~~~~~~~~-~f~~ya~~----~~~~-fgd--~v~~w~t~NEp~~-~~~~gy~~ 224 (430)
|+|.+-+... .|..|++. +.+| ||+ .|-.|.+-||=.. .+...|..
T Consensus 107 ~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~ 172 (673)
T COG1874 107 AVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQ 172 (673)
T ss_pred EecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccH
Confidence 5564433322 36666666 7788 776 4778999998655 34444433
No 19
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=98.15 E-value=8e-06 Score=84.76 Aligned_cols=109 Identities=20% Similarity=0.234 Sum_probs=81.7
Q ss_pred HHHHHHHHhCCCCEEEeccCCcccccCC--C-CCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhc---CCC
Q 014137 108 KEDVDIMANLNFDAYRFSISWSRIFPYG--T-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKY---NGL 181 (430)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~--~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~---gg~ 181 (430)
++|+..||+.|+|++|+.|.|-.+.+.+ . ...+...+++.+++|+..++.||.++++||+..-..-=.+.- +.+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 8999999999999999999866665542 1 223244566999999999999999999999875222111110 112
Q ss_pred C-ChHhHHHHHHHHHHHHHHhCCc--ceeEeeccCcch
Q 014137 182 L-SKRVVKDFADYADFCFKTFGDR--VKNWMTFNEPRV 216 (430)
Q Consensus 182 ~-~~~~~~~f~~ya~~~~~~fgd~--v~~w~t~NEp~~ 216 (430)
. ..+.++++.+-++.++.+|++. |-...++|||+.
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 2 3567899999999999999883 555789999986
No 20
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=97.69 E-value=0.00013 Score=77.55 Aligned_cols=106 Identities=24% Similarity=0.490 Sum_probs=62.8
Q ss_pred cHHHHHHHH-hCCCCEEEec--c--CCccccc-CCCC--CCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHh-
Q 014137 107 YKEDVDIMA-NLNFDAYRFS--I--SWSRIFP-YGTG--KVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKK- 177 (430)
Q Consensus 107 y~eDi~l~~-~lG~~~~Rfs--i--~Wsri~P-~~~g--~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~- 177 (430)
+.+.+..++ ++|++.+||- + +..-... ++.| .+|+ .+.|+++|.|+++||+|+|.|-. +|.++...
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf---~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~~ 115 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNF---TYLDQILDFLLENGLKPFVELGF--MPMALASGY 115 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS-
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCCh---HHHHHHHHHHHHcCCEEEEEEEe--chhhhcCCC
Confidence 566666665 9999999985 2 2222222 2223 2676 67899999999999999999975 67766422
Q ss_pred -----cCCCC-ChHhHHHHHHHHHHHHHHh----CC-cce--eEeeccCcchh
Q 014137 178 -----YNGLL-SKRVVKDFADYADFCFKTF----GD-RVK--NWMTFNEPRVV 217 (430)
Q Consensus 178 -----~gg~~-~~~~~~~f~~ya~~~~~~f----gd-~v~--~w~t~NEp~~~ 217 (430)
+.|+. .|+..+.+.++++.+++|+ |. .|. +|.+||||+..
T Consensus 116 ~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~ 168 (486)
T PF01229_consen 116 QTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLK 168 (486)
T ss_dssp -EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTST
T ss_pred CccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcc
Confidence 12232 3466777877776666655 42 465 56899999974
No 21
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.66 E-value=0.00022 Score=71.77 Aligned_cols=123 Identities=20% Similarity=0.337 Sum_probs=85.9
Q ss_pred CCCCCeehhccchhhccCCcCCCCCcCchhhhccccCCccccCCCCCCCcccccccHHHHHHHHhCCCCEEEe--ccCCc
Q 014137 52 LPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRF--SISWS 129 (430)
Q Consensus 52 fP~~FlwG~Atsa~QvEG~~~~dgkg~s~WD~~~~~~~~i~~~~~~d~A~d~Y~~y~eDi~l~~~lG~~~~Rf--si~Ws 129 (430)
.+.+|.+|+|.++.++++.. . |++-+ .--+|..-. ..-|.
T Consensus 6 ~~~~f~~G~av~~~~~~~~~--------~--------------------------~~~~~----~~~Fn~~t~eN~~Kw~ 47 (320)
T PF00331_consen 6 AKHKFPFGAAVNAQQLEDDP--------R--------------------------YRELF----AKHFNSVTPENEMKWG 47 (320)
T ss_dssp HCTTTEEEEEEBGGGHTHHH--------H--------------------------HHHHH----HHH-SEEEESSTTSHH
T ss_pred HhccCCEEEEechhHcCCcH--------H--------------------------HHHHH----HHhCCeeeeccccchh
Confidence 45688999999999988630 0 11111 112333333 47899
Q ss_pred ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeee--ecCCCCCcHHHHHhcCCCCChH---hHHHHHHHHHHHHHHhCC-
Q 014137 130 RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYA--NLYHYDLPEALEKKYNGLLSKR---VVKDFADYADFCFKTFGD- 203 (430)
Q Consensus 130 ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v--tL~H~d~P~~l~~~~gg~~~~~---~~~~f~~ya~~~~~~fgd- 203 (430)
.++|.. |.+|.+. .+++++-++++||++-- -+.|--.|.|+... .-+...+ ..+...+|.+.+++||++
T Consensus 48 ~~e~~~-g~~~~~~---~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~~ 122 (320)
T PF00331_consen 48 SIEPEP-GRFNFES---ADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVTRYKDK 122 (320)
T ss_dssp HHESBT-TBEE-HH---HHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hhcCCC-CccCccc---hhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHhHhccc
Confidence 999998 9999854 79999999999999873 34466789999763 1233333 788889999999999995
Q ss_pred -cceeEeeccCcchh
Q 014137 204 -RVKNWMTFNEPRVV 217 (430)
Q Consensus 204 -~v~~w~t~NEp~~~ 217 (430)
+|..|-++|||...
T Consensus 123 g~i~~WDVvNE~i~~ 137 (320)
T PF00331_consen 123 GRIYAWDVVNEAIDD 137 (320)
T ss_dssp TTESEEEEEES-B-T
T ss_pred cceEEEEEeeecccC
Confidence 89999999999643
No 22
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.50 E-value=0.025 Score=55.61 Aligned_cols=137 Identities=17% Similarity=0.197 Sum_probs=80.3
Q ss_pred CCCCCCeehhccch-hhccCCcCCCCCcCchhhhccccCCccccCCCCCCCcccccccHHHHHHHHhCCCCEEEeccCCc
Q 014137 51 SLPNGFVFGTATSA-YQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWS 129 (430)
Q Consensus 51 ~fP~~FlwG~Atsa-~QvEG~~~~dgkg~s~WD~~~~~~~~i~~~~~~d~A~d~Y~~y~eDi~l~~~lG~~~~Rfsi~Ws 129 (430)
..|+||+.|+-.|. +|+|-. ++| |..+ ++- -++=++.+|+.|+|.+|+-|-=.
T Consensus 34 ~~~~dFikGaDis~l~~lE~~---Gvk-------f~d~--------ng~--------~qD~~~iLK~~GvNyvRlRvwnd 87 (403)
T COG3867 34 NSPNDFIKGADISSLIELENS---GVK-------FFDT--------NGV--------RQDALQILKNHGVNYVRLRVWND 87 (403)
T ss_pred CChHHhhccccHHHHHHHHHc---Cce-------EEcc--------CCh--------HHHHHHHHHHcCcCeEEEEEecC
Confidence 58999999987654 677731 111 1111 221 13446999999999999965111
Q ss_pred ccccCCC---CCCChhhhHHHHHHHHHHHHcCCeeeeecC---CCCCcHHHHHhcCCCCC---hHhHHHHHHHHHHHHHH
Q 014137 130 RIFPYGT---GKVNWKGVAYYNQLINYLLKRGITPYANLY---HYDLPEALEKKYNGLLS---KRVVKDFADYADFCFKT 200 (430)
Q Consensus 130 ri~P~~~---g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---H~d~P~~l~~~~gg~~~---~~~~~~f~~ya~~~~~~ 200 (430)
----+|. |.-|. ++.--++-++.+++||+++++.| ||.=|..- ++-..|.+ .+...+--+|.+.+...
T Consensus 88 P~dsngn~yggGnnD--~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ-~kPkaW~~l~fe~lk~avy~yTk~~l~~ 164 (403)
T COG3867 88 PYDSNGNGYGGGNND--LKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQ-KKPKAWENLNFEQLKKAVYSYTKYVLTT 164 (403)
T ss_pred CccCCCCccCCCcch--HHHHHHHHHHHHhcCcEEEeeccchhhccChhhc-CCcHHhhhcCHHHHHHHHHHHHHHHHHH
Confidence 0001111 22332 45667788889999999999987 35445421 11134654 22344445666666666
Q ss_pred hCC---cceeEeeccCcch
Q 014137 201 FGD---RVKNWMTFNEPRV 216 (430)
Q Consensus 201 fgd---~v~~w~t~NEp~~ 216 (430)
+.+ ....-.+=||-+-
T Consensus 165 m~~eGi~pdmVQVGNEtn~ 183 (403)
T COG3867 165 MKKEGILPDMVQVGNETNG 183 (403)
T ss_pred HHHcCCCccceEeccccCC
Confidence 643 4566678899663
No 23
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.43 E-value=0.00064 Score=68.41 Aligned_cols=108 Identities=12% Similarity=0.135 Sum_probs=72.4
Q ss_pred cHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecC--------CCCCcHHHHHhc
Q 014137 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY--------HYDLPEALEKKY 178 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~--------H~d~P~~l~~~~ 178 (430)
|++-++.||++|+|++-+-|.|.-.||.. |++|+++..=.+.+|+.++++|+-+++-.= .-.+|.||..+.
T Consensus 26 W~~~l~k~ka~G~n~v~~yv~W~~he~~~-g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~~ 104 (319)
T PF01301_consen 26 WRDRLQKMKAAGLNTVSTYVPWNLHEPEE-GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRKP 104 (319)
T ss_dssp HHHHHHHHHHTT-SEEEEE--HHHHSSBT-TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGST
T ss_pred HHHHHHHHHhCCcceEEEeccccccCCCC-CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhccc
Confidence 77889999999999999999999999998 999999988899999999999999776421 124899998763
Q ss_pred CCC---CChHhHHHHHHHHHHHHHHhCC-------cceeEeeccCcc
Q 014137 179 NGL---LSKRVVKDFADYADFCFKTFGD-------RVKNWMTFNEPR 215 (430)
Q Consensus 179 gg~---~~~~~~~~f~~ya~~~~~~fgd-------~v~~w~t~NEp~ 215 (430)
+.. .++...+.-.+|.+.+++...+ -|-...+=||..
T Consensus 105 ~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 105 DIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp TS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 332 2445556666666666655532 355666777754
No 24
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.07 E-value=0.00063 Score=69.60 Aligned_cols=106 Identities=16% Similarity=0.333 Sum_probs=79.9
Q ss_pred ccccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeec-CC-----------CCCc
Q 014137 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL-YH-----------YDLP 171 (430)
Q Consensus 104 Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-~H-----------~d~P 171 (430)
++-.+.+++.+|++|++.+-..+-|.-+|..+++++|++ .|+++++.+++.|++..+.| +| .-+|
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs---~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWS---GYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLP 91 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---H---HHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcH---HHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCC
Confidence 446899999999999999999999999999977999984 59999999999999988765 23 3689
Q ss_pred HHHHHhc-----------C--------CCCChHhHHHHHHHHHHHHHHhCCcceeEeeccCcc
Q 014137 172 EALEKKY-----------N--------GLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPR 215 (430)
Q Consensus 172 ~~l~~~~-----------g--------g~~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~ 215 (430)
.|+.+.. | -|....+++.|.+|-+...++|.+.. -|+-|..
T Consensus 92 ~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I~ 151 (402)
T PF01373_consen 92 SWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEIQ 151 (402)
T ss_dssp HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEEE
T ss_pred HHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEEE
Confidence 9987531 2 24444459999999999999997754 5666644
No 25
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.84 E-value=0.0096 Score=60.83 Aligned_cols=101 Identities=24% Similarity=0.387 Sum_probs=56.9
Q ss_pred HhCCCCEEEecc---C------------Ccccc--cCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHh
Q 014137 115 ANLNFDAYRFSI---S------------WSRIF--PYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKK 177 (430)
Q Consensus 115 ~~lG~~~~Rfsi---~------------Wsri~--P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~ 177 (430)
+.+|++.+||.| + |.|.+ +..+|.+|+.+=+-=+.++++.+++|++.++ ++-+..|.|+...
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~N 135 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTKN 135 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSSS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhcC
Confidence 458999999987 3 33332 2224778776655667799999999999877 5567888887653
Q ss_pred c---CC-----CCChHhHHHHHHHHHHHHHHhCC---cceeEeeccCcch
Q 014137 178 Y---NG-----LLSKRVVKDFADYADFCFKTFGD---RVKNWMTFNEPRV 216 (430)
Q Consensus 178 ~---gg-----~~~~~~~~~f~~ya~~~~~~fgd---~v~~w~t~NEp~~ 216 (430)
- |+ =+.++..++|++|-..|+++|.. .+++-.++|||+.
T Consensus 136 G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 136 GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 1 11 14567899999999999999933 5888999999984
No 26
>PLN02803 beta-amylase
Probab=96.79 E-value=0.0042 Score=65.34 Aligned_cols=107 Identities=19% Similarity=0.325 Sum_probs=82.3
Q ss_pred cccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecC-C-----------CCCcH
Q 014137 105 HRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY-H-----------YDLPE 172 (430)
Q Consensus 105 ~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-H-----------~d~P~ 172 (430)
.-.+..++.+|++|++.+-+.+-|--+|.++.+++|+. .|+++++.+++.|++..+.|. | --+|+
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWs---gY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~ 183 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWE---GYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPP 183 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 33677999999999999999999999999988999985 599999999999999777664 3 24899
Q ss_pred HHHHh--------c---CCCC----------------ChHhHHHHHHHHHHHHHHhCCcceeEeeccCcch
Q 014137 173 ALEKK--------Y---NGLL----------------SKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (430)
Q Consensus 173 ~l~~~--------~---gg~~----------------~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~ 216 (430)
|+.+. | .|-. .+.-++.|.+|-+....+|.+... -|+.|..+
T Consensus 184 WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 184 WVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred HHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 98763 1 1211 223467888888888888877553 46666544
No 27
>PLN00197 beta-amylase; Provisional
Probab=96.76 E-value=0.0048 Score=65.12 Aligned_cols=106 Identities=20% Similarity=0.316 Sum_probs=82.6
Q ss_pred ccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecC-C-----------CCCcHH
Q 014137 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY-H-----------YDLPEA 173 (430)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-H-----------~d~P~~ 173 (430)
-.+..++.+|.+|++.+-+.+-|--+|+++.+++|+. .|+++++.+++.|++..+.|. | --+|+|
T Consensus 128 ~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWs---gY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~W 204 (573)
T PLN00197 128 AMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWG---GYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPKW 204 (573)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHH
Confidence 3788899999999999999999999999888999985 599999999999999777664 3 258999
Q ss_pred HHHhc-----------CCCCC----------------hHhHHHHHHHHHHHHHHhCCcceeEeeccCcch
Q 014137 174 LEKKY-----------NGLLS----------------KRVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (430)
Q Consensus 174 l~~~~-----------gg~~~----------------~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~ 216 (430)
+.+.- .|-.| +.-++.|.+|-+..-.+|.+..+ -|+.|..+
T Consensus 205 V~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~V 272 (573)
T PLN00197 205 VVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQV 272 (573)
T ss_pred HHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEEe
Confidence 87631 12222 22378899998888888877554 36666554
No 28
>PLN02161 beta-amylase
Probab=96.70 E-value=0.0062 Score=63.74 Aligned_cols=111 Identities=14% Similarity=0.318 Sum_probs=86.1
Q ss_pred cccccccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecC-CC-----------
Q 014137 101 VDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY-HY----------- 168 (430)
Q Consensus 101 ~d~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-H~----------- 168 (430)
..+..-.+..++.+|.+|++.+-+.+-|--+|.++.+++|+. .|+++++.+++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWs---gY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~I 189 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWS---LYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGI 189 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCccCc
Confidence 456666888999999999999999999999999888999985 599999999999999777664 42
Q ss_pred CCcHHHHHh--------c---CCCC----------------ChHhHHHHHHHHHHHHHHhCCcceeEeeccCcch
Q 014137 169 DLPEALEKK--------Y---NGLL----------------SKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (430)
Q Consensus 169 d~P~~l~~~--------~---gg~~----------------~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~ 216 (430)
-+|+|+.+. | .|.. .+.-++.|.+|-+...++|.+... -|+.|..+
T Consensus 190 pLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 190 SLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred cCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 489998753 1 1222 222467889998888888877553 46666554
No 29
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.67 E-value=0.011 Score=58.74 Aligned_cols=93 Identities=12% Similarity=0.150 Sum_probs=62.3
Q ss_pred cccccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCC--
Q 014137 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNG-- 180 (430)
Q Consensus 103 ~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg-- 180 (430)
....++.|+++||++|+|++|++- .|.. .++++.+-+.||-++.-+.....-.|- ..+-
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h-----~p~~------------~~~~~~cD~~GilV~~e~~~~~~~~~~--~~~~~~ 94 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHH-----YPPS------------PRFYDLCDELGILVWQEIPLEGHGSWQ--DFGNCN 94 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETT-----S--S------------HHHHHHHHHHT-EEEEE-S-BSCTSSS--STSCTS
T ss_pred CHHHHHHHHHHHHhcCcceEEccc-----ccCc------------HHHHHHHhhcCCEEEEeccccccCccc--cCCccc
Confidence 346789999999999999999962 2322 566778889999988766432111110 0010
Q ss_pred --CCChHhHHHHHHHHHHHHHHhCCc--ceeEeeccCc
Q 014137 181 --LLSKRVVKDFADYADFCFKTFGDR--VKNWMTFNEP 214 (430)
Q Consensus 181 --~~~~~~~~~f~~ya~~~~~~fgd~--v~~w~t~NEp 214 (430)
-.+++..+.+.+-++.+++++.+. |-.|.+.||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 95 YDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp CTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 135778888888889999999874 8889999998
No 30
>PLN02801 beta-amylase
Probab=96.55 E-value=0.011 Score=61.82 Aligned_cols=97 Identities=15% Similarity=0.312 Sum_probs=76.9
Q ss_pred ccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecC-C-----------CCCcHH
Q 014137 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY-H-----------YDLPEA 173 (430)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-H-----------~d~P~~ 173 (430)
-.+..++.+|++|++.+-+.+-|--+|.++.+++|++ .|+++++.+++.|++..+.|. | .-+|+|
T Consensus 38 ~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWs---gY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~W 114 (517)
T PLN02801 38 GLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWS---AYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIPQW 114 (517)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHH
Confidence 3688899999999999999999999999888999985 599999999999999766654 3 258999
Q ss_pred HHHhc-----------CCCC----------------ChHhHHHHHHHHHHHHHHhCCcc
Q 014137 174 LEKKY-----------NGLL----------------SKRVVKDFADYADFCFKTFGDRV 205 (430)
Q Consensus 174 l~~~~-----------gg~~----------------~~~~~~~f~~ya~~~~~~fgd~v 205 (430)
+.+.- .|-. .+.-++.|.+|-+...++|.+..
T Consensus 115 V~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 115 VRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred HHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 87631 1211 22346888888888888887643
No 31
>PLN03059 beta-galactosidase; Provisional
Probab=96.52 E-value=0.012 Score=65.69 Aligned_cols=107 Identities=10% Similarity=0.082 Sum_probs=83.9
Q ss_pred ccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecC--------CCCCcHHHHHh
Q 014137 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY--------HYDLPEALEKK 177 (430)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~--------H~d~P~~l~~~ 177 (430)
.|++=++.||++|+|++-.=|-|.--||++ |++|++|..=..++|+.+.+.|+-.|+-.- .-.+|.||.+.
T Consensus 60 ~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~-G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~ 138 (840)
T PLN03059 60 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSP-GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYV 138 (840)
T ss_pred HHHHHHHHHHHcCCCeEEEEecccccCCCC-CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcC
Confidence 467779999999999999999999999997 999999999999999999999998887542 34789999754
Q ss_pred cCCC----CChHhHHHHHHHHHHHHHHhC---------CcceeEeeccCc
Q 014137 178 YNGL----LSKRVVKDFADYADFCFKTFG---------DRVKNWMTFNEP 214 (430)
Q Consensus 178 ~gg~----~~~~~~~~f~~ya~~~~~~fg---------d~v~~w~t~NEp 214 (430)
.|. .++...++-.+|.+.+++..+ .-|-...+=||=
T Consensus 139 -~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEY 187 (840)
T PLN03059 139 -PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEY 187 (840)
T ss_pred -CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccc
Confidence 453 245666666677777776663 235556666773
No 32
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.47 E-value=0.0075 Score=59.88 Aligned_cols=85 Identities=19% Similarity=0.365 Sum_probs=70.1
Q ss_pred cCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeee-e-cCCCCCcHHHHHhcCCCCChHhHHHHHHHHHHHHHHhCC
Q 014137 126 ISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYA-N-LYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGD 203 (430)
Q Consensus 126 i~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v-t-L~H~d~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~fgd 203 (430)
.-|.-|+|+. |.+|+++ -|.+.+-++++||..-- | +.|--.|.||.. ..+..+...+...++...|++||++
T Consensus 67 mKwe~i~p~~-G~f~Fe~---AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rYkg 140 (345)
T COG3693 67 MKWEAIEPER-GRFNFEA---ADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRYKG 140 (345)
T ss_pred cccccccCCC-CccCccc---hHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhccC
Confidence 4688899986 9999876 48889999999998543 2 234467999863 3477789999999999999999999
Q ss_pred cceeEeeccCcch
Q 014137 204 RVKNWMTFNEPRV 216 (430)
Q Consensus 204 ~v~~w~t~NEp~~ 216 (430)
.|..|-+.|||.-
T Consensus 141 ~~~sWDVVNE~vd 153 (345)
T COG3693 141 SVASWDVVNEAVD 153 (345)
T ss_pred ceeEEEecccccC
Confidence 9999999999965
No 33
>PLN02905 beta-amylase
Probab=96.28 E-value=0.019 Score=61.37 Aligned_cols=100 Identities=15% Similarity=0.294 Sum_probs=78.6
Q ss_pred ccccccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecC-C-----------CC
Q 014137 102 DQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY-H-----------YD 169 (430)
Q Consensus 102 d~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-H-----------~d 169 (430)
....-.+..++.+|.+|++.+-+.+-|--+|+++.+++|+. .|+++++.+++.|++..+.|. | --
T Consensus 283 ~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWs---gY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~IP 359 (702)
T PLN02905 283 ADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWN---GYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCIP 359 (702)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 45566788999999999999999999999999888999985 599999999999999777664 3 25
Q ss_pred CcHHHHHh--------c---CCCC----------------ChHhHHHHHHHHHHHHHHhCCc
Q 014137 170 LPEALEKK--------Y---NGLL----------------SKRVVKDFADYADFCFKTFGDR 204 (430)
Q Consensus 170 ~P~~l~~~--------~---gg~~----------------~~~~~~~f~~ya~~~~~~fgd~ 204 (430)
+|+|+.+. | .|.. .+.-++.|.+|-+....+|.+.
T Consensus 360 LP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 360 LPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred CCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 89998763 1 1222 2334688888888887777664
No 34
>PLN02705 beta-amylase
Probab=96.26 E-value=0.014 Score=62.14 Aligned_cols=97 Identities=18% Similarity=0.311 Sum_probs=76.4
Q ss_pred cccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecC-C-----------CCCcH
Q 014137 105 HRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY-H-----------YDLPE 172 (430)
Q Consensus 105 ~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-H-----------~d~P~ 172 (430)
.-.+..++.+|.+|++.+-+.+-|--+|.++.+++|+. .|+++++.+++.|++..+.|. | --+|+
T Consensus 268 ~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWs---gY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~ 344 (681)
T PLN02705 268 EGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWS---GYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISLPQ 344 (681)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcH---HHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccCCH
Confidence 44788899999999999999999999999888999985 599999999999999776654 3 25899
Q ss_pred HHHHh--------c---CCCC----------------ChHhHHHHHHHHHHHHHHhCCc
Q 014137 173 ALEKK--------Y---NGLL----------------SKRVVKDFADYADFCFKTFGDR 204 (430)
Q Consensus 173 ~l~~~--------~---gg~~----------------~~~~~~~f~~ya~~~~~~fgd~ 204 (430)
|+.+. | .|.. .+.-++.|.+|.+..-.+|.+.
T Consensus 345 WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 345 WVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred HHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 98763 0 1222 2234588888888887777664
No 35
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=96.23 E-value=0.028 Score=55.77 Aligned_cols=101 Identities=12% Similarity=0.143 Sum_probs=63.3
Q ss_pred HHHHHHHhCCCCEEEecc--CCccc--------cc--CCC------CCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCC
Q 014137 109 EDVDIMANLNFDAYRFSI--SWSRI--------FP--YGT------GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDL 170 (430)
Q Consensus 109 eDi~l~~~lG~~~~Rfsi--~Wsri--------~P--~~~------g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~ 170 (430)
.=++..|+-|+|.+|+.+ .|.+. .| ..+ ..+|++-+++.+++|+.|.++||++.+.+.| +.
T Consensus 34 ~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w-g~ 112 (289)
T PF13204_consen 34 QYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW-GC 112 (289)
T ss_dssp HHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--HH
T ss_pred HHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-CC
Confidence 337889999999999998 44433 11 111 1389999999999999999999999887765 12
Q ss_pred cHHHHHhcCCCCC---hHhHHHHHHHHHHHHHHhCCc-ceeEeeccCc
Q 014137 171 PEALEKKYNGLLS---KRVVKDFADYADFCFKTFGDR-VKNWMTFNEP 214 (430)
Q Consensus 171 P~~l~~~~gg~~~---~~~~~~f~~ya~~~~~~fgd~-v~~w~t~NEp 214 (430)
|. .+ +.|.. .-..+.-.+|.+.|++||+.. =..|++-||-
T Consensus 113 ~~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 113 PY---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HH---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred cc---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 21 11 44532 334777889999999999997 4779998885
No 36
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=96.21 E-value=0.042 Score=54.67 Aligned_cols=89 Identities=16% Similarity=0.237 Sum_probs=49.6
Q ss_pred ccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChH
Q 014137 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKR 185 (430)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~ 185 (430)
-.+.|+.+||+||+|++|+= .|-|.. =.+...+.|.++||=.+++|... ...+... ..|.+ =
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY----~vdp~~----------nHd~CM~~~~~aGIYvi~Dl~~p--~~sI~r~-~P~~s-w 115 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY----SVDPSK----------NHDECMSAFADAGIYVILDLNTP--NGSINRS-DPAPS-W 115 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TTS------------HHHHHHHHHTT-EEEEES-BT--TBS--TT-S------
T ss_pred HHHHhHHHHHHcCCCEEEEE----EeCCCC----------CHHHHHHHHHhCCCEEEEecCCC--CccccCC-CCcCC-C
Confidence 45999999999999999974 233332 26889999999999999999642 1112111 11111 1
Q ss_pred hHHHHHHHHHHH--HHHhCCcceeEeeccC
Q 014137 186 VVKDFADYADFC--FKTFGDRVKNWMTFNE 213 (430)
Q Consensus 186 ~~~~f~~ya~~~--~~~fgd~v~~w~t~NE 213 (430)
..+.|.+|.+.+ |.+| +.+--+..=||
T Consensus 116 ~~~l~~~~~~vid~fa~Y-~N~LgFf~GNE 144 (314)
T PF03198_consen 116 NTDLLDRYFAVIDAFAKY-DNTLGFFAGNE 144 (314)
T ss_dssp -HHHHHHHHHHHHHHTT--TTEEEEEEEES
T ss_pred CHHHHHHHHHHHHHhccC-CceEEEEecce
Confidence 235566666553 4445 23555666666
No 37
>PRK10150 beta-D-glucuronidase; Provisional
Probab=95.88 E-value=0.032 Score=60.91 Aligned_cols=93 Identities=15% Similarity=0.198 Sum_probs=65.7
Q ss_pred cccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHH-------h
Q 014137 105 HRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEK-------K 177 (430)
Q Consensus 105 ~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~-------~ 177 (430)
..+..|+++||++|+|++|+| -.|.. ..+++.|-+.||-++.-+.-+....|+.. .
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~s-----h~p~~------------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~ 375 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTS-----HYPYS------------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKP 375 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEec-----cCCCC------------HHHHHHHHhcCcEEEEecccccccccccccccccccc
Confidence 347889999999999999996 23332 46788889999988765533322222210 0
Q ss_pred cCCCC----ChHhHHHHHHHHHHHHHHhCCc--ceeEeeccCc
Q 014137 178 YNGLL----SKRVVKDFADYADFCFKTFGDR--VKNWMTFNEP 214 (430)
Q Consensus 178 ~gg~~----~~~~~~~f~~ya~~~~~~fgd~--v~~w~t~NEp 214 (430)
...|. +++..+.+.+-++.+++++++. |-.|.+-||+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~ 418 (604)
T PRK10150 376 KETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEP 418 (604)
T ss_pred cccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCC
Confidence 01222 3567788888899999999885 7789999996
No 38
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=95.09 E-value=0.14 Score=46.70 Aligned_cols=101 Identities=17% Similarity=0.315 Sum_probs=66.9
Q ss_pred ccHHHHHHHHhCCCCEEEeccCCcccc-----cCC--CCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhc
Q 014137 106 RYKEDVDIMANLNFDAYRFSISWSRIF-----PYG--TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKY 178 (430)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~Wsri~-----P~~--~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~ 178 (430)
+|+++++.|+++|++++=+- |+... |.. .+.+.....+....+++++.+.||+.+|.|+.. |.|..+
T Consensus 21 ~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~--~~~w~~-- 94 (166)
T PF14488_consen 21 QWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD--PDYWDQ-- 94 (166)
T ss_pred HHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC--chhhhc--
Confidence 58999999999999998533 44432 221 011222345789999999999999999999853 556542
Q ss_pred CCCCChH-hHHHHHHHHHHHHHHhCCc--ceeEeeccCcc
Q 014137 179 NGLLSKR-VVKDFADYADFCFKTFGDR--VKNWMTFNEPR 215 (430)
Q Consensus 179 gg~~~~~-~~~~f~~ya~~~~~~fgd~--v~~w~t~NEp~ 215 (430)
.+.+ -++.=..-++.+.++||.. +.-|-+-.|+.
T Consensus 95 ---~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 95 ---GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 1211 2333345677788888874 55577777764
No 39
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.76 E-value=0.45 Score=51.59 Aligned_cols=108 Identities=14% Similarity=0.153 Sum_probs=85.3
Q ss_pred ccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeec--------CCCCCcHHHHHh
Q 014137 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL--------YHYDLPEALEKK 177 (430)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--------~H~d~P~~l~~~ 177 (430)
.|++=|+.+|++|+|++..=+-|.-.||.. |++|++|.-=...+|....++|+=.++-+ .|-.+|.||...
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~-g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~ 128 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP-GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNV 128 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC-CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhhC
Confidence 367779999999999999999999999998 99999998777888999999998766543 255779888765
Q ss_pred cCCC----CChHhHHHHHHHHHHHHHHh-------CCcceeEeeccCcc
Q 014137 178 YNGL----LSKRVVKDFADYADFCFKTF-------GDRVKNWMTFNEPR 215 (430)
Q Consensus 178 ~gg~----~~~~~~~~f~~ya~~~~~~f-------gd~v~~w~t~NEp~ 215 (430)
.|- .|+.+..+..+|.+.++... |.-|-.-.+=||=.
T Consensus 129 -pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 129 -PGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred -CceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 452 36778888899999888743 33455566777744
No 40
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=93.35 E-value=0.34 Score=56.29 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=63.7
Q ss_pred cccccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecC---CCCCcHHHHHhcC
Q 014137 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY---HYDLPEALEKKYN 179 (430)
Q Consensus 103 ~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---H~d~P~~l~~~~g 179 (430)
....+++||++||++|+|++|+| ..|.. ..+.+.|=+.||-++--.. |--.|. . .
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~~------------p~fydlcDe~GilV~dE~~~e~hg~~~~---~--~ 426 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPNH------------PLWYELCDRYGLYVVDEANIETHGMVPM---N--R 426 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC------------HHHHHHHHHcCCEEEEecCccccCCccc---c--C
Confidence 45668999999999999999996 23332 3456778888998776542 211110 0 0
Q ss_pred CCCChHhHHHHHHHHHHHHHHhCCc--ceeEeeccCcc
Q 014137 180 GLLSKRVVKDFADYADFCFKTFGDR--VKNWMTFNEPR 215 (430)
Q Consensus 180 g~~~~~~~~~f~~ya~~~~~~fgd~--v~~w~t~NEp~ 215 (430)
...+++..+.+.+=++.+++|.+.. |-.|..-||+.
T Consensus 427 ~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 427 LSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 1124666777777788899999885 78899999974
No 41
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=91.93 E-value=0.69 Score=53.76 Aligned_cols=90 Identities=14% Similarity=0.151 Sum_probs=63.2
Q ss_pred cccccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeec----CCCCCcHHHHHhc
Q 014137 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL----YHYDLPEALEKKY 178 (430)
Q Consensus 103 ~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL----~H~d~P~~l~~~~ 178 (430)
....+++|+++||++|+|++|+| ..|.. ..+.+.|-+.||-++--. +.|.... .+
T Consensus 353 ~~e~~~~dl~lmK~~g~NavR~s-----HyP~~------------~~fydlcDe~GllV~dE~~~e~~g~~~~~----~~ 411 (1021)
T PRK10340 353 GMDRVEKDIQLMKQHNINSVRTA-----HYPND------------PRFYELCDIYGLFVMAETDVESHGFANVG----DI 411 (1021)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC------------HHHHHHHHHCCCEEEECCcccccCccccc----cc
Confidence 34678999999999999999997 24443 456778888999877643 1121110 00
Q ss_pred CCC--CChHhHHHHHHHHHHHHHHhCCc--ceeEeeccCc
Q 014137 179 NGL--LSKRVVKDFADYADFCFKTFGDR--VKNWMTFNEP 214 (430)
Q Consensus 179 gg~--~~~~~~~~f~~ya~~~~~~fgd~--v~~w~t~NEp 214 (430)
.+ .++...+.|.+=++.+++|.+.. |-.|..-||.
T Consensus 412 -~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~ 450 (1021)
T PRK10340 412 -SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNES 450 (1021)
T ss_pred -ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 01 23455677777788899999885 7889999997
No 42
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=90.29 E-value=1.3 Score=49.94 Aligned_cols=90 Identities=13% Similarity=0.129 Sum_probs=66.0
Q ss_pred cccccccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCC
Q 014137 101 VDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNG 180 (430)
Q Consensus 101 ~d~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg 180 (430)
+-.+..+.+|+++||++|+|++|.| -.|+. ....+.|-+.||=++=-..+. -++.
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~------------~~~ydLcDelGllV~~Ea~~~--------~~~~ 371 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYPNS------------EEFYDLCDELGLLVIDEAMIE--------THGM 371 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC------------HHHHHHHHHhCcEEEEecchh--------hcCC
Confidence 4455668999999999999999999 44443 556677778899887654431 1233
Q ss_pred CCChHhHHHHHHHHHHHHHHhCCc--ceeEeeccCcc
Q 014137 181 LLSKRVVKDFADYADFCFKTFGDR--VKNWMTFNEPR 215 (430)
Q Consensus 181 ~~~~~~~~~f~~ya~~~~~~fgd~--v~~w~t~NEp~ 215 (430)
...++..+...+=++..++|-++. |-.|..=||.+
T Consensus 372 ~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 372 PDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 455666677777788888888774 78899999955
No 43
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=88.19 E-value=0.98 Score=46.50 Aligned_cols=101 Identities=17% Similarity=0.235 Sum_probs=72.2
Q ss_pred HHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCC--hHhHHHHH
Q 014137 114 MANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLS--KRVVKDFA 191 (430)
Q Consensus 114 ~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~--~~~~~~f~ 191 (430)
-+|+|++-.|.---|.-++.. =-++ ..++++++|.+.+.|+.-+.+-.||+.+.--+..|.+=.. ....+.++
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~--~~~~---~t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~~ 88 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQK--LFYP---FTYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLIA 88 (428)
T ss_pred hhhhceeeehhcceeeeeecc--ccCC---hHHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHHH
Confidence 468899999888888733222 1234 3789999999999995555566788877655543434222 24789999
Q ss_pred HHHHHHHHHhCCc-ce--eEeeccCcchhhc
Q 014137 192 DYADFCFKTFGDR-VK--NWMTFNEPRVVAA 219 (430)
Q Consensus 192 ~ya~~~~~~fgd~-v~--~w~t~NEp~~~~~ 219 (430)
.+++.|+.++|-+ |. ....+||||..+.
T Consensus 89 ~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ad 119 (428)
T COG3664 89 AFLKHVIRRVGVEFVRKWPFYSPNEPNLLAD 119 (428)
T ss_pred HHHHHHHHHhChhheeecceeecCCCCcccc
Confidence 9999999999964 33 3669999998744
No 44
>smart00642 Aamy Alpha-amylase domain.
Probab=85.68 E-value=2.2 Score=38.75 Aligned_cols=64 Identities=16% Similarity=0.248 Sum_probs=44.9
Q ss_pred cccccHHHHHHHHhCCCCEEEeccCCccccc--CCCC-------CCC--hhhhHHHHHHHHHHHHcCCeeeeecC
Q 014137 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFP--YGTG-------KVN--WKGVAYYNQLINYLLKRGITPYANLY 166 (430)
Q Consensus 103 ~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P--~~~g-------~~n--~~~~~~y~~~i~~l~~~gi~p~vtL~ 166 (430)
.+....+-++.+++||++++-++--+..... ...| .+| ....+-++++|++++++||++|+++-
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3455677788999999999998876555531 1101 122 12346689999999999999999863
No 45
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=83.18 E-value=0.59 Score=48.98 Aligned_cols=109 Identities=16% Similarity=0.072 Sum_probs=78.9
Q ss_pred cHHHHHHHHhCCCCEEEeccCC-cccccCCCCCCChhh-hHHHHHHHHHHHHcCCeeeeecC----CCCCcHHHHHhcCC
Q 014137 107 YKEDVDIMANLNFDAYRFSISW-SRIFPYGTGKVNWKG-VAYYNQLINYLLKRGITPYANLY----HYDLPEALEKKYNG 180 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~W-sri~P~~~g~~n~~~-~~~y~~~i~~l~~~gi~p~vtL~----H~d~P~~l~~~~gg 180 (430)
.+.|++.++.+|++..|++|-= ... -+..|..|.+. +.+...+++.+...+|+.++||. |+.--.|...=.|+
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEdc-~d~~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag~ 106 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGEDC-RDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAGE 106 (587)
T ss_pred hhcccccccCccceeEEEEEecCcch-hhhhceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCCC
Confidence 4678999999999999999522 222 12237888877 89999999999999999999875 32211111000011
Q ss_pred ------CCChHhHHHHHHHHHHHHHHhCCc--ceeEeeccCcch
Q 014137 181 ------LLSKRVVKDFADYADFCFKTFGDR--VKNWMTFNEPRV 216 (430)
Q Consensus 181 ------~~~~~~~~~f~~ya~~~~~~fgd~--v~~w~t~NEp~~ 216 (430)
...+++..-|.+|.+.+++.|+.. +.-|..-|||.+
T Consensus 107 ~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 107 QSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 234667888999999999999876 455999999766
No 46
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=82.49 E-value=9.3 Score=38.14 Aligned_cols=87 Identities=20% Similarity=0.293 Sum_probs=62.9
Q ss_pred ccccHHHHHHHHhCCCCEEEecc---CCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCC
Q 014137 104 YHRYKEDVDIMANLNFDAYRFSI---SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNG 180 (430)
Q Consensus 104 Y~~y~eDi~l~~~lG~~~~Rfsi---~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg 180 (430)
..||++-.++++++|+|+.-+.= .-.. +..+-++.+..+-+.++..||++++++. |..|.-+ ||
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~--------Lt~~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----gg 122 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKL--------LTPEYLDKVARLADVFRPYGIKVYLSVN-FASPIEL----GG 122 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGG--------GSTTTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----TS
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhh--------cCHHHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----CC
Confidence 45788899999999999986531 1111 2233477889999999999999999994 7888653 66
Q ss_pred C-----CChHhHHHHHHHHHHHHHHhCC
Q 014137 181 L-----LSKRVVKDFADYADFCFKTFGD 203 (430)
Q Consensus 181 ~-----~~~~~~~~f~~ya~~~~~~fgd 203 (430)
. ++++++.++.+=++.+.++..|
T Consensus 123 L~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 123 LPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp -S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4 5789999999999999999876
No 47
>PLN02361 alpha-amylase
Probab=80.23 E-value=3.9 Score=42.55 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=47.6
Q ss_pred ccccccHHHHHHHHhCCCCEEEeccCCcccccCCCC-----CCCh--hhhHHHHHHHHHHHHcCCeeeeec
Q 014137 102 DQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTG-----KVNW--KGVAYYNQLINYLLKRGITPYANL 165 (430)
Q Consensus 102 d~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g-----~~n~--~~~~~y~~~i~~l~~~gi~p~vtL 165 (430)
.+|....+-++.+++||++++=++-...-.-+.|-. .+|. -..+=++++|++|.++||++|+++
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 478899999999999999999888755444343311 1221 123558999999999999999974
No 48
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=79.76 E-value=9.1 Score=37.77 Aligned_cols=119 Identities=13% Similarity=0.152 Sum_probs=71.8
Q ss_pred CchhhhccccCCccccCCCCCCCcccccccHHHHHHHHhCCCCEEEeccCCcccccCCC-CCCChhhhHHHHHHHHHHHH
Q 014137 78 PSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLK 156 (430)
Q Consensus 78 ~s~WD~~~~~~~~i~~~~~~d~A~d~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~~~~~y~~~i~~l~~ 156 (430)
.+.|+-|....++ . .+-.+.-.+.++|+=|+..+++|+..+=+.--|+.-..... .......-....++++..++
T Consensus 9 k~~W~Ww~~~~~~---~-~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~ 84 (273)
T PF10566_consen 9 KAAWSWWSMHNGK---G-VGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKE 84 (273)
T ss_dssp EEEECTCCCCTTS---S-BSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHH
T ss_pred eEEEeecccCCCC---C-CCCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHH
Confidence 4667666543221 1 12234446788999999999999999999999997332221 11111112357999999999
Q ss_pred cCCeeeeecCCCC------CcHHHHHh---c---C------CC---CChHhHHHHHHHHHHHHHH
Q 014137 157 RGITPYANLYHYD------LPEALEKK---Y---N------GL---LSKRVVKDFADYADFCFKT 200 (430)
Q Consensus 157 ~gi~p~vtL~H~d------~P~~l~~~---~---g------g~---~~~~~~~~f~~ya~~~~~~ 200 (430)
+|+.+++-.+|-+ +=.-+++. | | || .+.+.++.|.+-++.++++
T Consensus 85 KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 85 KGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp TT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 9999999998755 11111111 1 2 23 3556788888888888775
No 49
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=77.14 E-value=2.9 Score=40.16 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=23.8
Q ss_pred ChHHHHHHHHHHHHHcCCCcEEEecCCC
Q 014137 402 VPWGMYKALMYIKGHYGNPTVILSENGT 429 (430)
Q Consensus 402 ~P~GLr~~L~~i~~rY~~ppI~ITENG~ 429 (430)
.+.++...|+.++++|+. ||.|||-|+
T Consensus 149 ~~~~~~~~i~~~~~~~~k-PIWITEf~~ 175 (239)
T PF11790_consen 149 DADDFKDYIDDLHNRYGK-PIWITEFGC 175 (239)
T ss_pred CHHHHHHHHHHHHHHhCC-CEEEEeecc
Confidence 477899999999999995 599999885
No 50
>PLN00196 alpha-amylase; Provisional
Probab=77.04 E-value=4.5 Score=42.46 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=46.8
Q ss_pred cccccHHHHHHHHhCCCCEEEeccCCcccccCCCC-----CCCh---hhhHHHHHHHHHHHHcCCeeeee--cCC
Q 014137 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTG-----KVNW---KGVAYYNQLINYLLKRGITPYAN--LYH 167 (430)
Q Consensus 103 ~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g-----~~n~---~~~~~y~~~i~~l~~~gi~p~vt--L~H 167 (430)
+|....+.+.-+++||++++=++-........|-. .+|. -.-+=++++|+++.++||++|++ +.|
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH 116 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINH 116 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccC
Confidence 46667888999999999999998765544333311 1221 12345899999999999999997 455
No 51
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=74.41 E-value=83 Score=31.66 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=32.3
Q ss_pred ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCC
Q 014137 130 RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHY 168 (430)
Q Consensus 130 ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~ 168 (430)
+..|...+-++.+-+..++++.+.++++|-..++=|+|-
T Consensus 62 ~~~~~~~~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~ 100 (336)
T cd02932 62 RITPGDLGLWNDEQIEALKRIVDFIHSQGAKIGIQLAHA 100 (336)
T ss_pred CCCCCceeecCHHHHHHHHHHHHHHHhcCCcEEEEccCC
Confidence 444443356788889999999999999999999999994
No 52
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=74.25 E-value=6.3 Score=38.00 Aligned_cols=57 Identities=23% Similarity=0.434 Sum_probs=40.7
Q ss_pred HHHHHHHHhCCCCEEEeccCCcccccCCC-C-------CCC--hhhhHHHHHHHHHHHHcCCeeeeecC
Q 014137 108 KEDVDIMANLNFDAYRFSISWSRIFPYGT-G-------KVN--WKGVAYYNQLINYLLKRGITPYANLY 166 (430)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g-------~~n--~~~~~~y~~~i~~l~~~gi~p~vtL~ 166 (430)
.+-++.+|+||++++-++=-+.. |.+. | .+| .-..+=+++||+++.++||++|+++-
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~--~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFES--PNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EES--SSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceeccccccc--ccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 55688999999999999865552 2111 1 112 22456789999999999999999863
No 53
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=72.62 E-value=18 Score=36.21 Aligned_cols=98 Identities=23% Similarity=0.258 Sum_probs=64.5
Q ss_pred cccHHHHHHHHhCCCCEEEeccCC-------cccccCCC---CCC-ChhhhHHHHHHHHHHHHcCCeeeeec----CC--
Q 014137 105 HRYKEDVDIMANLNFDAYRFSISW-------SRIFPYGT---GKV-NWKGVAYYNQLINYLLKRGITPYANL----YH-- 167 (430)
Q Consensus 105 ~~y~eDi~l~~~lG~~~~Rfsi~W-------sri~P~~~---g~~-n~~~~~~y~~~i~~l~~~gi~p~vtL----~H-- 167 (430)
...++=++.++++|+|++=+.+.+ |.++|... |.. ...|.+.+..+|++++++||+...-+ -.
T Consensus 19 ~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~ 98 (311)
T PF02638_consen 19 EQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPD 98 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCc
Confidence 345777899999999987665543 34444321 111 11256779999999999999987543 11
Q ss_pred -----CCCcHHHHHh-------c----CC--CC---ChHhHHHHHHHHHHHHHHhC
Q 014137 168 -----YDLPEALEKK-------Y----NG--LL---SKRVVKDFADYADFCFKTFG 202 (430)
Q Consensus 168 -----~d~P~~l~~~-------~----gg--~~---~~~~~~~f~~ya~~~~~~fg 202 (430)
-..|.|+..+ + ++ |. +|++.+...+-++.|+++|.
T Consensus 99 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 99 VSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred hhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1236665421 1 22 54 46788889999999999994
No 54
>PRK05402 glycogen branching enzyme; Provisional
Probab=69.82 E-value=21 Score=40.14 Aligned_cols=92 Identities=9% Similarity=0.049 Sum_probs=58.0
Q ss_pred cccHHHH-HHHHhCCCCEEEeccCCc---------------ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeec--C
Q 014137 105 HRYKEDV-DIMANLNFDAYRFSISWS---------------RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL--Y 166 (430)
Q Consensus 105 ~~y~eDi-~l~~~lG~~~~Rfsi~Ws---------------ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--~ 166 (430)
.-..+.+ +.+|+||++++=+.=-.. .+.|.= |. .+=++++|++|.++||++|+++ .
T Consensus 265 ~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~-Gt-----~~dfk~lV~~~H~~Gi~VilD~V~N 338 (726)
T PRK05402 265 RELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF-GT-----PDDFRYFVDACHQAGIGVILDWVPA 338 (726)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc-CC-----HHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3334453 788999999997664322 122211 32 3458999999999999999984 4
Q ss_pred CCCC-----------cHHHHH-----hcCCC-------CChHhHHHHHHHHHHHHHHhC
Q 014137 167 HYDL-----------PEALEK-----KYNGL-------LSKRVVKDFADYADFCFKTFG 202 (430)
Q Consensus 167 H~d~-----------P~~l~~-----~~gg~-------~~~~~~~~f~~ya~~~~~~fg 202 (430)
|+.. |.+... .+..| .++++.+.+.+-++.-+++||
T Consensus 339 H~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 339 HFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred CCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 6522 111000 01123 467888888888888888874
No 55
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=68.97 E-value=13 Score=38.06 Aligned_cols=96 Identities=13% Similarity=0.199 Sum_probs=58.5
Q ss_pred cHHHHHHHHhCCCCEEEeccCCcccccCC---CCCCChhhhHHHHHHHHHHHHcCCeee-eecCCCCCcHHHHHhcCCCC
Q 014137 107 YKEDVDIMANLNFDAYRFSISWSRIFPYG---TGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEALEKKYNGLL 182 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~---~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~d~P~~l~~~~gg~~ 182 (430)
=+|.++.|+++|++. +||...-+-++- -|+.. ..+-..+.|+.+++.|+..+ +++ =+++|.
T Consensus 98 t~e~l~~l~~~G~~r--vsiGvqS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dl-i~GlPg---------- 162 (374)
T PRK05799 98 TEEKLKILKSMGVNR--LSIGLQAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDL-MFGLPN---------- 162 (374)
T ss_pred CHHHHHHHHHcCCCE--EEEECccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEe-ecCCCC----------
Confidence 368899999999994 555444443321 13221 24567889999999999744 454 345552
Q ss_pred ChHhHHHHHHHHHHHHHHhCCcceeEeeccCcchhhc
Q 014137 183 SKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAA 219 (430)
Q Consensus 183 ~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~~~ 219 (430)
++.+.|.+-.+.+.+.=-+.+..+...-+|+....
T Consensus 163 --qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~ 197 (374)
T PRK05799 163 --QTLEDWKETLEKVVELNPEHISCYSLIIEEGTPFY 197 (374)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHH
Confidence 23566666666655432356666665557775433
No 56
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.94 E-value=13 Score=39.30 Aligned_cols=111 Identities=19% Similarity=0.300 Sum_probs=71.3
Q ss_pred ccccHHHHHHHHhCCCCEEEec----cCCcccccCC----------------------------CCCCChh----hhHHH
Q 014137 104 YHRYKEDVDIMANLNFDAYRFS----ISWSRIFPYG----------------------------TGKVNWK----GVAYY 147 (430)
Q Consensus 104 Y~~y~eDi~l~~~lG~~~~Rfs----i~Wsri~P~~----------------------------~g~~n~~----~~~~y 147 (430)
|.+|+..|+.|+=.|+|..=-. +-|.+|+-.- .|+..+. .+-.=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 5789999999999999965433 2455554321 0222211 12234
Q ss_pred HHHHHHHHHcCCeeeeecCCCCCcHHHHHhc--------CCCCC---------------hHhHHHHHHHHHHHHHHhCCc
Q 014137 148 NQLINYLLKRGITPYANLYHYDLPEALEKKY--------NGLLS---------------KRVVKDFADYADFCFKTFGDR 204 (430)
Q Consensus 148 ~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~--------gg~~~---------------~~~~~~f~~ya~~~~~~fgd~ 204 (430)
+++|+.+++-||+|++--+---.|..|+.-+ +-|.+ |-+.+-=..|-+...++||.-
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 6899999999999999988777899887654 23321 223344445666778889962
Q ss_pred --ceeEeeccCc
Q 014137 205 --VKNWMTFNEP 214 (430)
Q Consensus 205 --v~~w~t~NEp 214 (430)
+-.=-||||.
T Consensus 237 tniy~~DpFNE~ 248 (666)
T KOG2233|consen 237 TNIYSADPFNEI 248 (666)
T ss_pred ccccccCccccc
Confidence 2223389994
No 57
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=68.38 E-value=21 Score=38.73 Aligned_cols=92 Identities=15% Similarity=0.236 Sum_probs=58.4
Q ss_pred ccccHHHHHHHHhCCCCEEEeccC--------C-------cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeec--C
Q 014137 104 YHRYKEDVDIMANLNFDAYRFSIS--------W-------SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL--Y 166 (430)
Q Consensus 104 Y~~y~eDi~l~~~lG~~~~Rfsi~--------W-------sri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--~ 166 (430)
|.-..+-++.+|+||++++-+.=- | -.+.|.- |. .+=+++||++|.++||++|+++ .
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~-G~-----~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY-GG-----PDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc-CC-----HHHHHHHHHHHHHCCCEEEEEEccC
Confidence 444566789999999999986532 1 1111111 32 4558999999999999999974 4
Q ss_pred CCCC---------cHHHHHhc-CCC------CCh---HhHHHHHHHHHHHHHHhC
Q 014137 167 HYDL---------PEALEKKY-NGL------LSK---RVVKDFADYADFCFKTFG 202 (430)
Q Consensus 167 H~d~---------P~~l~~~~-gg~------~~~---~~~~~f~~ya~~~~~~fg 202 (430)
|... | |+...+ .+| .++ ++.+.+.+-++.-+++||
T Consensus 184 H~~~~~~~~~~~~~-y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~ 237 (542)
T TIGR02402 184 HFGPEGNYLPRYAP-YFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYH 237 (542)
T ss_pred CCCCccccccccCc-cccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 5421 2 322111 234 244 777777887777777764
No 58
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=68.21 E-value=14 Score=36.57 Aligned_cols=82 Identities=16% Similarity=0.079 Sum_probs=61.3
Q ss_pred cHHHHHHHHhCCCCEEEeccCCcccccCCC-CCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChH
Q 014137 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKR 185 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~ 185 (430)
-+.|++..++.|++.+++.++=|...-... +.--.+.++...++++.+++.|+++.+++-+|..|. +.
T Consensus 76 ~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~-----------r~ 144 (280)
T cd07945 76 GDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM-----------RD 144 (280)
T ss_pred cHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------cC
Confidence 367999999999999999986665543321 344467789999999999999999999998776552 11
Q ss_pred hHHHHHHHHHHHHH
Q 014137 186 VVKDFADYADFCFK 199 (430)
Q Consensus 186 ~~~~f~~ya~~~~~ 199 (430)
..+.+.++++.+.+
T Consensus 145 ~~~~~~~~~~~~~~ 158 (280)
T cd07945 145 SPDYVFQLVDFLSD 158 (280)
T ss_pred CHHHHHHHHHHHHH
Confidence 24666777777654
No 59
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=67.80 E-value=8.5 Score=40.90 Aligned_cols=64 Identities=22% Similarity=0.259 Sum_probs=43.8
Q ss_pred ccccccHHHHHHHHhCCCCEEEeccCCccc--------ccCCC---C------CCChh--hhHHHHHHHHHHHHcCCeee
Q 014137 102 DQYHRYKEDVDIMANLNFDAYRFSISWSRI--------FPYGT---G------KVNWK--GVAYYNQLINYLLKRGITPY 162 (430)
Q Consensus 102 d~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri--------~P~~~---g------~~n~~--~~~~y~~~i~~l~~~gi~p~ 162 (430)
|.|.-..+-++-+++||++++=++-...-. .|..- + .+|+. ..+=+++||++|.++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 345556777999999999999887654432 11110 0 12211 34558999999999999999
Q ss_pred eec
Q 014137 163 ANL 165 (430)
Q Consensus 163 vtL 165 (430)
+++
T Consensus 99 ~D~ 101 (479)
T PRK09441 99 ADV 101 (479)
T ss_pred EEE
Confidence 974
No 60
>PLN02784 alpha-amylase
Probab=67.59 E-value=12 Score=42.44 Aligned_cols=64 Identities=16% Similarity=0.218 Sum_probs=48.1
Q ss_pred ccccccHHHHHHHHhCCCCEEEeccCCcccccCCCCC-----CChh--hhHHHHHHHHHHHHcCCeeeeec
Q 014137 102 DQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGK-----VNWK--GVAYYNQLINYLLKRGITPYANL 165 (430)
Q Consensus 102 d~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~-----~n~~--~~~~y~~~i~~l~~~gi~p~vtL 165 (430)
.+|....+.++.+++||++++=++=.-...-+.|... +|.. ..+=++++|++|.++||++|+++
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4788899999999999999998887655444443211 2211 24568999999999999999974
No 61
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=67.32 E-value=19 Score=35.71 Aligned_cols=85 Identities=14% Similarity=0.123 Sum_probs=61.8
Q ss_pred ccHHHHHHHHhCCCCEEEeccCCcccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeeeecCC-CCCcHHHHHhcCCCCC
Q 014137 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYG-TGKVNWKGVAYYNQLINYLLKRGITPYANLYH-YDLPEALEKKYNGLLS 183 (430)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H-~d~P~~l~~~~gg~~~ 183 (430)
+-.+|+++..+.|++.+|+.++=|...-.. .+.=-++.++...+.|+..+++|++...++.. |..| +.|..+
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~------~~~~~~ 153 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP------YEGEVP 153 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC------CCCCCC
Confidence 358999999999999999998666543221 14444567889999999999999999877663 4445 244333
Q ss_pred hHhHHHHHHHHHHHHH
Q 014137 184 KRVVKDFADYADFCFK 199 (430)
Q Consensus 184 ~~~~~~f~~ya~~~~~ 199 (430)
.+.+.++++.+.+
T Consensus 154 ---~~~~~~~~~~~~~ 166 (287)
T PRK05692 154 ---PEAVADVAERLFA 166 (287)
T ss_pred ---HHHHHHHHHHHHH
Confidence 5777777777654
No 62
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=66.65 E-value=27 Score=34.76 Aligned_cols=79 Identities=14% Similarity=0.080 Sum_probs=51.5
Q ss_pred HHHHhCCCCEEEeccC--CcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCC------C
Q 014137 112 DIMANLNFDAYRFSIS--WSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLL------S 183 (430)
Q Consensus 112 ~l~~~lG~~~~Rfsi~--Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~------~ 183 (430)
+.+++.|++++-++.. -..-.|.-.|.............|..|+++|++++|.+ |||. +
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~-------------GG~~g~~~~~~ 85 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSF-------------GGASGTPLATS 85 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEe-------------cCCCCCccccC
Confidence 5778899999887753 22222221011110112455778999999999999988 5554 3
Q ss_pred hHhHHHHHHHHHHHHHHhCC
Q 014137 184 KRVVKDFADYADFCFKTFGD 203 (430)
Q Consensus 184 ~~~~~~f~~ya~~~~~~fgd 203 (430)
...++.|++....+.++|+=
T Consensus 86 ~~~~~~~~~a~~~~i~~y~~ 105 (294)
T cd06543 86 CTSADQLAAAYQKVIDAYGL 105 (294)
T ss_pred cccHHHHHHHHHHHHHHhCC
Confidence 45688888888888888863
No 63
>PRK12313 glycogen branching enzyme; Provisional
Probab=66.59 E-value=22 Score=39.25 Aligned_cols=93 Identities=12% Similarity=0.159 Sum_probs=59.2
Q ss_pred ccccHHH-HHHHHhCCCCEEEeccCCc---------------ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeee--c
Q 014137 104 YHRYKED-VDIMANLNFDAYRFSISWS---------------RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYAN--L 165 (430)
Q Consensus 104 Y~~y~eD-i~l~~~lG~~~~Rfsi~Ws---------------ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt--L 165 (430)
|.-..+. ++-+|+||++++=+.=-.. .+.|.- |. .+=++++|+++.++||++|++ .
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~-Gt-----~~d~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY-GT-----PEDFMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC-CC-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 4444566 4999999999998654222 111111 32 345899999999999999998 4
Q ss_pred CCCCCcH----HHH--------H---h-cCCC-------CChHhHHHHHHHHHHHHHHhC
Q 014137 166 YHYDLPE----ALE--------K---K-YNGL-------LSKRVVKDFADYADFCFKTFG 202 (430)
Q Consensus 166 ~H~d~P~----~l~--------~---~-~gg~-------~~~~~~~~f~~ya~~~~~~fg 202 (430)
.|..... ++. + . +..| .++++.+.+.+-++..+++||
T Consensus 243 nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 243 GHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4643110 110 0 0 0123 367888888888888888874
No 64
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=66.16 E-value=17 Score=35.31 Aligned_cols=59 Identities=22% Similarity=0.155 Sum_probs=46.7
Q ss_pred cHHHHHHHHhCCCCEEEeccCCcccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeeeec
Q 014137 107 YKEDVDIMANLNFDAYRFSISWSRIFPYG-TGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 165 (430)
-.+|++...+.|++.+|+.++.|.+.-.. -+.--++.++...++++.++++|+++.+++
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 38899999999999999999888764321 133345678889999999999999877655
No 65
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=63.67 E-value=4.4 Score=32.57 Aligned_cols=19 Identities=37% Similarity=0.770 Sum_probs=13.9
Q ss_pred HHHHhCC--cceeEeeccC-cc
Q 014137 197 CFKTFGD--RVKNWMTFNE-PR 215 (430)
Q Consensus 197 ~~~~fgd--~v~~w~t~NE-p~ 215 (430)
++++||+ +|.+|..+|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4567776 7999999999 76
No 66
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=63.61 E-value=14 Score=41.28 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=40.0
Q ss_pred HHHHHhCCCCEEEe----ccCCcccccCC-C----C-------------CCChh---hhHHHHHHHHHHHHcCCeeeeec
Q 014137 111 VDIMANLNFDAYRF----SISWSRIFPYG-T----G-------------KVNWK---GVAYYNQLINYLLKRGITPYANL 165 (430)
Q Consensus 111 i~l~~~lG~~~~Rf----si~Wsri~P~~-~----g-------------~~n~~---~~~~y~~~i~~l~~~gi~p~vtL 165 (430)
|+-+|+||++++.+ ++.+.+...+. . | ..|++ .++=+++||++|.++||++|+++
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 99999999999993 45555544322 0 1 11232 47779999999999999999974
No 67
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=63.23 E-value=59 Score=33.03 Aligned_cols=89 Identities=15% Similarity=0.147 Sum_probs=67.6
Q ss_pred CCCCcccccccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHH
Q 014137 97 GDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEK 176 (430)
Q Consensus 97 ~d~A~d~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~ 176 (430)
+-+|.=||+ |+--+. ..+.|++.+|+. + |.+-. -+..+.+++.++++|+..=+..+|-.++.-+.+
T Consensus 74 PlVADIHFd-~~lAl~-a~~~g~dkiRIN---------P-GNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~ 139 (346)
T TIGR00612 74 PLVADIHFD-YRLAAL-AMAKGVAKVRIN---------P-GNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRLLE 139 (346)
T ss_pred CEEEeeCCC-cHHHHH-HHHhccCeEEEC---------C-CCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHH
Confidence 445666776 454443 346799999975 3 55533 367899999999999999999999999999999
Q ss_pred hcCCCCChHhHHHHHHHHHHHHH
Q 014137 177 KYNGLLSKRVVKDFADYADFCFK 199 (430)
Q Consensus 177 ~~gg~~~~~~~~~f~~ya~~~~~ 199 (430)
+||+-+....++--.++++.+-+
T Consensus 140 kyg~~t~eamveSAl~~v~~le~ 162 (346)
T TIGR00612 140 KYGDATAEAMVQSALEEAAILEK 162 (346)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHH
Confidence 98765556677777777777543
No 68
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=62.77 E-value=32 Score=30.09 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=38.3
Q ss_pred HHHHHHHhCCCCEEEeccC--Ccc-cccCCCCC--CChhhhHHHHHHHHHHHHcCCeeeeecC
Q 014137 109 EDVDIMANLNFDAYRFSIS--WSR-IFPYGTGK--VNWKGVAYYNQLINYLLKRGITPYANLY 166 (430)
Q Consensus 109 eDi~l~~~lG~~~~Rfsi~--Wsr-i~P~~~g~--~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 166 (430)
+=++.+|++|+|+.-+... +-- -.|...|. ...+ -+.+.++|++++++||++++=+-
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEe
Confidence 3478999999999998332 110 12332221 2222 47899999999999999998654
No 69
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=62.10 E-value=18 Score=36.64 Aligned_cols=109 Identities=20% Similarity=0.363 Sum_probs=59.6
Q ss_pred ccccHHHHHHHHhCCCCEEEecc----CCcccccCC----------------------------CCCCC----hhhhHHH
Q 014137 104 YHRYKEDVDIMANLNFDAYRFSI----SWSRIFPYG----------------------------TGKVN----WKGVAYY 147 (430)
Q Consensus 104 Y~~y~eDi~l~~~lG~~~~Rfsi----~Wsri~P~~----------------------------~g~~n----~~~~~~y 147 (430)
|.||++.|+.|+=-|||..=--+ -|.|++-+- .|++. .+-.+.=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 67889999999998988543211 233332221 02221 2234556
Q ss_pred HHHHHHHHHcCCeeeeecCCCCCcHHHHHhc--------CCCC--------ChHhHHHHHHHHHHH----HHHhCCccee
Q 014137 148 NQLINYLLKRGITPYANLYHYDLPEALEKKY--------NGLL--------SKRVVKDFADYADFC----FKTFGDRVKN 207 (430)
Q Consensus 148 ~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~--------gg~~--------~~~~~~~f~~ya~~~----~~~fgd~v~~ 207 (430)
+++++++++-||+|++--+---+|..|.++| +.|. +| .-+.|++.++.. -+.|| .-.+
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~q~~~yG-~~~~ 175 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEEQIKLYG-TDHI 175 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHHHHHHH----SE
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHHHHHhcC-CCce
Confidence 8899999999999999888777899998887 2232 22 336677766665 45588 3444
Q ss_pred Ee--eccCc
Q 014137 208 WM--TFNEP 214 (430)
Q Consensus 208 w~--t~NEp 214 (430)
+. +|||-
T Consensus 176 Y~~D~FnE~ 184 (333)
T PF05089_consen 176 YAADPFNEG 184 (333)
T ss_dssp EE--TTTTS
T ss_pred eCCCccCCC
Confidence 44 89994
No 70
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=61.25 E-value=22 Score=34.02 Aligned_cols=82 Identities=13% Similarity=-0.017 Sum_probs=55.8
Q ss_pred HHHHHHHHhCCCCEEEeccCCcccccCCC-CCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChHh
Q 014137 108 KEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRV 186 (430)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~ 186 (430)
++|++.+++.|++.+|++++-+...-.-. +.=.+..++...+.++.+++.|++..+.+....-| ...
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~~ 144 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KTD 144 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CCC
Confidence 89999999999999999998774211110 11122356778899999999999999998543322 123
Q ss_pred HHHHHHHHHHHHHHhC
Q 014137 187 VKDFADYADFCFKTFG 202 (430)
Q Consensus 187 ~~~f~~ya~~~~~~fg 202 (430)
.+.+.++++.+. .+|
T Consensus 145 ~~~l~~~~~~~~-~~g 159 (265)
T cd03174 145 PEYVLEVAKALE-EAG 159 (265)
T ss_pred HHHHHHHHHHHH-HcC
Confidence 455666666654 344
No 71
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=61.13 E-value=12 Score=40.56 Aligned_cols=62 Identities=18% Similarity=0.167 Sum_probs=41.0
Q ss_pred ccccHHHHHHHHhCCCCEEEeccCCcccccC-CC-----CCCCh--hhhHHHHHHHHHHHHcCCeeeeec
Q 014137 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPY-GT-----GKVNW--KGVAYYNQLINYLLKRGITPYANL 165 (430)
Q Consensus 104 Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~-~~-----g~~n~--~~~~~y~~~i~~l~~~gi~p~vtL 165 (430)
+.-..+-++.+++||++++=++--...-.-. |- -.+|+ ...+=++.+|+++.++||++|+++
T Consensus 26 ~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 26 LRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3445677899999999999776433321100 10 01111 134568999999999999999985
No 72
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=61.05 E-value=52 Score=32.62 Aligned_cols=105 Identities=19% Similarity=0.215 Sum_probs=67.1
Q ss_pred cHHHHHHHHhCC--CCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCC---CCcHHHHHh---c
Q 014137 107 YKEDVDIMANLN--FDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHY---DLPEALEKK---Y 178 (430)
Q Consensus 107 y~eDi~l~~~lG--~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---d~P~~l~~~---~ 178 (430)
.++-++.+++.| ++++=+.+.|.+-.-.++=.+|++-.--.+.+|++|+++|++.++.+.-+ +.|..-+.+ |
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g~ 105 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKGY 105 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCCe
Confidence 467788999999 66777888887532211224455444556899999999999988876533 223221110 0
Q ss_pred ------------------CC---CCChHhHHHHHHHHHHHHHHhCCcce-eEeeccCc
Q 014137 179 ------------------NG---LLSKRVVKDFADYADFCFKTFGDRVK-NWMTFNEP 214 (430)
Q Consensus 179 ------------------gg---~~~~~~~~~f~~ya~~~~~~fgd~v~-~w~t~NEp 214 (430)
++ ++||+..+.|.+..+.+.+ .| |+ +|.=+||+
T Consensus 106 ~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~ 160 (308)
T cd06593 106 LVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGER 160 (308)
T ss_pred EEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCC
Confidence 11 5788888888777776544 33 44 46668887
No 73
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=60.18 E-value=23 Score=36.33 Aligned_cols=60 Identities=17% Similarity=0.074 Sum_probs=47.8
Q ss_pred cHHHHHHHHhCCCCEEEeccCCcccccCCC-CCCChhhhHHHHHHHHHHHHcCCeeeeecC
Q 014137 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 166 (430)
.++|++.+.+.|++.+|+.++-|.+.-+.. +.--.+.++...+.++.+++.|++..+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 589999999999999999988776643321 333455688899999999999999887764
No 74
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=59.94 E-value=29 Score=36.97 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=59.3
Q ss_pred cccccHHH-----HHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHH----
Q 014137 103 QYHRYKED-----VDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEA---- 173 (430)
Q Consensus 103 ~Y~~y~eD-----i~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~---- 173 (430)
.|..|.+| ++...+.|++.+|+.++-+.+ +-....++..++.|+....++.+-..|..
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~ 154 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI-------------RNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEY 154 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH-------------HHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHH
Confidence 46668888 899999999999999766542 33566677777777777666654333411
Q ss_pred HHH---h-------------cCCCCChHhHHHHHHHHHHHHHHhCCcceeEeeccCcch
Q 014137 174 LEK---K-------------YNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (430)
Q Consensus 174 l~~---~-------------~gg~~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~ 216 (430)
+.+ + -.|...|. ...+..+.+-++++ ..-...+.|-..+
T Consensus 155 ~~~~a~~l~~~Gad~I~i~Dt~G~l~P~---~v~~Lv~~lk~~~~-vpI~~H~Hnt~Gl 209 (467)
T PRK14041 155 YLEFARELVDMGVDSICIKDMAGLLTPK---RAYELVKALKKKFG-VPVEVHSHCTTGL 209 (467)
T ss_pred HHHHHHHHHHcCCCEEEECCccCCcCHH---HHHHHHHHHHHhcC-CceEEEecCCCCc
Confidence 110 0 03455543 34455555566665 2234667776654
No 75
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=58.54 E-value=14 Score=40.04 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=42.1
Q ss_pred ccccHHHHHHHHhCCCCEEEeccCCcccccCCC-C-------CCCh--hhhHHHHHHHHHHHHcCCeeeeecC
Q 014137 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGT-G-------KVNW--KGVAYYNQLINYLLKRGITPYANLY 166 (430)
Q Consensus 104 Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g-------~~n~--~~~~~y~~~i~~l~~~gi~p~vtL~ 166 (430)
+.-..+.++.+++||++++=++=-+.. |... | .+|+ ...+-+++||+++.++||++|+++-
T Consensus 32 l~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 32 LRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred HHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 444578899999999999987654421 2111 1 1111 1345689999999999999999753
No 76
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=58.54 E-value=27 Score=35.73 Aligned_cols=84 Identities=12% Similarity=0.010 Sum_probs=61.3
Q ss_pred cHHHHHHHHhCCCCEEEeccCCcccccCCC-CCCChhhhHHHHHHHHHHHHcCCeeeeecCC-CCCcHHHHHhcCCCCCh
Q 014137 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYH-YDLPEALEKKYNGLLSK 184 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H-~d~P~~l~~~~gg~~~~ 184 (430)
-++|++...+.|++.+.+.++=|...-... +.=-++.++.+.++|+.++++|++..+++.. |..| +.|-.
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p------~~~r~-- 194 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCP------IEGPV-- 194 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCC------ccCCC--
Confidence 589999999999999999987766654432 4445678999999999999999999877753 4444 23322
Q ss_pred HhHHHHHHHHHHHHH
Q 014137 185 RVVKDFADYADFCFK 199 (430)
Q Consensus 185 ~~~~~f~~ya~~~~~ 199 (430)
.++.+.++++.+.+
T Consensus 195 -~~~~l~~~~~~~~~ 208 (347)
T PLN02746 195 -PPSKVAYVAKELYD 208 (347)
T ss_pred -CHHHHHHHHHHHHH
Confidence 25666666666544
No 77
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=58.44 E-value=32 Score=36.56 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=41.7
Q ss_pred cccccHHH-----HHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCc
Q 014137 103 QYHRYKED-----VDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP 171 (430)
Q Consensus 103 ~Y~~y~eD-----i~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P 171 (430)
.|..|.+| +++.++.|++.+|..-. .|. ++-....|+.+++.|....+++.+=+.|
T Consensus 98 gy~~ypddvv~~fv~~a~~~Gidi~Rifd~-----------lnd--~~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 98 GYRHYADDIVDKFISLSAQNGIDVFRIFDA-----------LND--PRNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred CccCCcchHHHHHHHHHHHCCCCEEEEccc-----------CCC--HHHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 57778889 89999999999998642 332 3456777777888888777777765555
No 78
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=57.75 E-value=16 Score=35.71 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=46.4
Q ss_pred HHHHHHHHhCCCCEEEeccCCcccccCCC-CCCChhhhHHHHHHHHHHHHcCCeeeeecC
Q 014137 108 KEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (430)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 166 (430)
.+|++...+.|++.+|+.++=|...-... +.=-++.++...+++..++++|+++.+++-
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 77999999999999999886555432221 322356789999999999999999998884
No 79
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=57.72 E-value=2e+02 Score=29.03 Aligned_cols=39 Identities=13% Similarity=0.027 Sum_probs=33.0
Q ss_pred ccccc---CCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCC
Q 014137 129 SRIFP---YGTGKVNWKGVAYYNQLINYLLKRGITPYANLYH 167 (430)
Q Consensus 129 sri~P---~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H 167 (430)
++..| ...+-+|.+-+..++++.+.++++|-..++=|+|
T Consensus 63 ~~~~~~~~~~~~~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h 104 (338)
T cd04733 63 HLEEPGIIGNVVLESGEDLEAFREWAAAAKANGALIWAQLNH 104 (338)
T ss_pred cccCCCcCCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEccC
Confidence 45566 3236788889999999999999999999999999
No 80
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=57.32 E-value=38 Score=33.11 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=49.5
Q ss_pred HHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChHhH
Q 014137 108 KEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVV 187 (430)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~~ 187 (430)
.+|++...+.|++.+|+++..+ .++-..++++.++++|+++.+.+.+-. + -..
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~-------------~~~~~~~~i~~ak~~G~~v~~~~~~a~----------~----~~~ 137 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH-------------EFDEALPLIKAIKEKGYEVFFNLMAIS----------G----YSD 137 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc-------------cHHHHHHHHHHHHHCCCeEEEEEEeec----------C----CCH
Confidence 6899999999999999987443 356789999999999999999886521 1 225
Q ss_pred HHHHHHHHHHHH
Q 014137 188 KDFADYADFCFK 199 (430)
Q Consensus 188 ~~f~~ya~~~~~ 199 (430)
+.+.++++.+.+
T Consensus 138 ~~~~~~~~~~~~ 149 (266)
T cd07944 138 EELLELLELVNE 149 (266)
T ss_pred HHHHHHHHHHHh
Confidence 666777777644
No 81
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=55.95 E-value=36 Score=37.35 Aligned_cols=97 Identities=15% Similarity=0.147 Sum_probs=54.9
Q ss_pred cccccHHH-----HHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCc----HH
Q 014137 103 QYHRYKED-----VDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP----EA 173 (430)
Q Consensus 103 ~Y~~y~eD-----i~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P----~~ 173 (430)
.|.+|.+| ++..++.|++.+|+..+.+.+ +.....|+..++.|....+++.+=+.| ..
T Consensus 90 g~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~-------------~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~ 156 (593)
T PRK14040 90 GYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP-------------RNLETALKAVRKVGAHAQGTLSYTTSPVHTLQT 156 (593)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH-------------HHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHH
Confidence 46666666 999999999999999755443 233445555555555544333321222 11
Q ss_pred HH-----------------HhcCCCCChHhHHHHHHHHHHHHHHhCCcceeEeeccCcchh
Q 014137 174 LE-----------------KKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVV 217 (430)
Q Consensus 174 l~-----------------~~~gg~~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~ 217 (430)
+. |- .|-..|. ...+..+.+-+++ +..-...+.|-..+.
T Consensus 157 ~~~~a~~l~~~Gad~i~i~Dt-~G~l~P~---~~~~lv~~lk~~~-~~pi~~H~Hnt~GlA 212 (593)
T PRK14040 157 WVDLAKQLEDMGVDSLCIKDM-AGLLKPY---AAYELVSRIKKRV-DVPLHLHCHATTGLS 212 (593)
T ss_pred HHHHHHHHHHcCCCEEEECCC-CCCcCHH---HHHHHHHHHHHhc-CCeEEEEECCCCchH
Confidence 11 11 3445543 3445555555666 333357788887754
No 82
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=55.38 E-value=58 Score=31.94 Aligned_cols=68 Identities=13% Similarity=0.050 Sum_probs=49.2
Q ss_pred cHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChHh
Q 014137 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRV 186 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~ 186 (430)
-++|++...+.|++.+|+++..+. ++...+.++.++++|++..+++.--+ + ++-.
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~-------------~~~~~~~i~~ak~~G~~v~~~i~~~~---------~---~~~~ 147 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND-------------VRNLEVAIKAVKKAGKHVEGAICYTG---------S---PVHT 147 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh-------------HHHHHHHHHHHHHCCCeEEEEEEecC---------C---CCCC
Confidence 488999999999999999875554 45678899999999999887663101 1 2223
Q ss_pred HHHHHHHHHHHHH
Q 014137 187 VKDFADYADFCFK 199 (430)
Q Consensus 187 ~~~f~~ya~~~~~ 199 (430)
.+.+.++++.+.+
T Consensus 148 ~~~~~~~~~~~~~ 160 (275)
T cd07937 148 LEYYVKLAKELED 160 (275)
T ss_pred HHHHHHHHHHHHH
Confidence 5666777777544
No 83
>PRK14706 glycogen branching enzyme; Provisional
Probab=55.16 E-value=40 Score=37.39 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=52.3
Q ss_pred HHHHhCCCCEEEeccCCcccccCC-C-C--CCC-------hhhhHHHHHHHHHHHHcCCeeeeec--CCCC---------
Q 014137 112 DIMANLNFDAYRFSISWSRIFPYG-T-G--KVN-------WKGVAYYNQLINYLLKRGITPYANL--YHYD--------- 169 (430)
Q Consensus 112 ~l~~~lG~~~~Rfsi~Wsri~P~~-~-g--~~n-------~~~~~~y~~~i~~l~~~gi~p~vtL--~H~d--------- 169 (430)
+.+|+||++++-+.=-=. .|.. . | ..| ....+=++.+|++|.++||++|+++ .|+.
T Consensus 175 ~ylk~lG~t~velmPv~e--~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~ 252 (639)
T PRK14706 175 EYVTYMGYTHVELLGVME--HPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHF 252 (639)
T ss_pred HHHHHcCCCEEEccchhc--CCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhcc
Confidence 678999999987643100 1111 0 1 011 0123448999999999999999874 3432
Q ss_pred --CcHH-HHHhcC----CC-------CChHhHHHHHHHHHHHHHHhC
Q 014137 170 --LPEA-LEKKYN----GL-------LSKRVVKDFADYADFCFKTFG 202 (430)
Q Consensus 170 --~P~~-l~~~~g----g~-------~~~~~~~~f~~ya~~~~~~fg 202 (430)
.|.+ ..+... .| .++++.+.+.+=++.-+++|+
T Consensus 253 dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 253 DGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred CCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1211 000001 12 257788888888888888884
No 84
>PRK09505 malS alpha-amylase; Reviewed
Probab=55.02 E-value=22 Score=39.65 Aligned_cols=59 Identities=24% Similarity=0.313 Sum_probs=41.3
Q ss_pred cHHHHHHHHhCCCCEEEeccCCcccc-----------c----CCC-----CCCCh--hhhHHHHHHHHHHHHcCCeeeee
Q 014137 107 YKEDVDIMANLNFDAYRFSISWSRIF-----------P----YGT-----GKVNW--KGVAYYNQLINYLLKRGITPYAN 164 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~-----------P----~~~-----g~~n~--~~~~~y~~~i~~l~~~gi~p~vt 164 (430)
..+-++.+++||++++=++--...+. | .|. -.+|+ ...+=++++|+++.++||++|++
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45568899999999999886554431 1 010 01222 24566899999999999999997
Q ss_pred c
Q 014137 165 L 165 (430)
Q Consensus 165 L 165 (430)
+
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 4
No 85
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=54.73 E-value=16 Score=39.40 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=39.0
Q ss_pred cHHHHHHHHhCCCCEEEeccCCcccc-cCCC-----CCCCh--hhhHHHHHHHHHHHHcCCeeeeec
Q 014137 107 YKEDVDIMANLNFDAYRFSISWSRIF-PYGT-----GKVNW--KGVAYYNQLINYLLKRGITPYANL 165 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~-P~~~-----g~~n~--~~~~~y~~~i~~l~~~gi~p~vtL 165 (430)
..+-++-+++||++++=++=-.+.-. ..|- -.+|+ ...+=++++|+++.++||++|+++
T Consensus 30 i~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 30 LTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 46668999999999987764322100 0010 02222 124568999999999999999974
No 86
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=54.71 E-value=66 Score=35.43 Aligned_cols=99 Identities=11% Similarity=0.124 Sum_probs=59.2
Q ss_pred ccccHHHH-HHHHhCCCCEEEe-ccCCccccc-CCCC-----CCC--hhhhHHHHHHHHHHHHcCCeeeeecC--CCCC-
Q 014137 104 YHRYKEDV-DIMANLNFDAYRF-SISWSRIFP-YGTG-----KVN--WKGVAYYNQLINYLLKRGITPYANLY--HYDL- 170 (430)
Q Consensus 104 Y~~y~eDi-~l~~~lG~~~~Rf-si~Wsri~P-~~~g-----~~n--~~~~~~y~~~i~~l~~~gi~p~vtL~--H~d~- 170 (430)
|.-..+.+ +.+|+||++++=+ .|..+.-.- .|-. .++ ....+=++++|++|.++||++|+++- |...
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~ 234 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKD 234 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCc
Confidence 33344564 8899999999988 333321100 0100 011 11134589999999999999999854 5421
Q ss_pred ----------cHHHHH-----hcCCC-------CChHhHHHHHHHHHHHHHHhC
Q 014137 171 ----------PEALEK-----KYNGL-------LSKRVVKDFADYADFCFKTFG 202 (430)
Q Consensus 171 ----------P~~l~~-----~~gg~-------~~~~~~~~f~~ya~~~~~~fg 202 (430)
|.+... .+..| .++++.+.+.+-++..+++|+
T Consensus 235 ~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 235 DHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred cchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 111110 00112 457888899999999998874
No 87
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=54.62 E-value=65 Score=32.25 Aligned_cols=108 Identities=17% Similarity=0.241 Sum_probs=70.8
Q ss_pred HHHHHHHHhCCCC-EEEecc-CCc-ccccC--CCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCC
Q 014137 108 KEDVDIMANLNFD-AYRFSI-SWS-RIFPY--GTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLL 182 (430)
Q Consensus 108 ~eDi~l~~~lG~~-~~Rfsi-~Ws-ri~P~--~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~ 182 (430)
+|.+++|+++|++ .+=+++ +-+ ++.-. ++| .+ .+-+.+.++.++++||.+.+.+. +.+| +..
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg-~t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P--------~~s 183 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKG-ST---FEDFIRAAELARKYGAGVKAYLL-FKPP--------FLS 183 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCC-CC---HHHHHHHHHHHHHcCCcEEEEEE-ecCC--------CCC
Confidence 7889999999998 466665 222 22211 112 22 35678999999999999766653 3444 112
Q ss_pred ChHhHHHHHHHHHHHHHHhCCcceeEeeccCcchhhccccCCCcCCC
Q 014137 183 SKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFFAP 229 (430)
Q Consensus 183 ~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~~~~gy~~G~~~P 229 (430)
-.+.++.+.+.++.+.+ +++.|....+.=+|+.....-|..|.|.|
T Consensus 184 e~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 184 EKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred hhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 23678888888887765 45888888777777765544566677655
No 88
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=54.03 E-value=65 Score=32.65 Aligned_cols=69 Identities=14% Similarity=0.087 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCeeeeecCCCCCc--------HHHHH---h----------c-----------CCCCChHhHHHHHHHHH
Q 014137 148 NQLINYLLKRGITPYANLYHYDLP--------EALEK---K----------Y-----------NGLLSKRVVKDFADYAD 195 (430)
Q Consensus 148 ~~~i~~l~~~gi~p~vtL~H~d~P--------~~l~~---~----------~-----------gg~~~~~~~~~f~~ya~ 195 (430)
+++|++|+++|++.++.+.-+-.+ .+-+. . | -.++|++.++.|.+.-+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 148 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIK 148 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHH
Confidence 889999999999988877544222 22110 0 1 13678888888887777
Q ss_pred HHHHHhCCcceeEeeccCcchh
Q 014137 196 FCFKTFGDRVKNWMTFNEPRVV 217 (430)
Q Consensus 196 ~~~~~fgd~v~~w~t~NEp~~~ 217 (430)
.++...|= --+|.=+|||..+
T Consensus 149 ~~~~~~Gv-dg~w~D~~Ep~~~ 169 (339)
T cd06602 149 DFHDQVPF-DGLWIDMNEPSNF 169 (339)
T ss_pred HHHhcCCC-cEEEecCCCCchH
Confidence 66665542 4568899999643
No 89
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=53.15 E-value=67 Score=31.93 Aligned_cols=106 Identities=10% Similarity=0.043 Sum_probs=70.4
Q ss_pred cHHHHHHHHhCCC--CEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCC---cHHHH------
Q 014137 107 YKEDVDIMANLNF--DAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDL---PEALE------ 175 (430)
Q Consensus 107 y~eDi~l~~~lG~--~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~---P~~l~------ 175 (430)
..+-++.+++.|+ +++=+.+.|..-. ++=.+|.+-.---.+++++|+++|+++++.+.=+-. +..-+
T Consensus 32 v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~ 109 (303)
T cd06592 32 VLNYAQEIIDNGFPNGQIEIDDNWETCY--GDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGY 109 (303)
T ss_pred HHHHHHHHHHcCCCCCeEEeCCCccccC--CccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCe
Confidence 4566788888885 5777777785432 222445544555689999999999998886653211 11111
Q ss_pred ---HhcC----------------CCCChHhHHHHHHHHHHHHHHhCCcceeEeeccCcc
Q 014137 176 ---KKYN----------------GLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPR 215 (430)
Q Consensus 176 ---~~~g----------------g~~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~ 215 (430)
+.-| .++||+..+.|.+..+.+....|= --+|+=+|||.
T Consensus 110 ~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 110 LVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred EEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 0001 167899999999988888877752 34588999996
No 90
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=53.03 E-value=23 Score=39.92 Aligned_cols=99 Identities=12% Similarity=0.201 Sum_probs=57.2
Q ss_pred cccccHHH-HHHHHhCCCCEEEeccCCcccc--cCCCC-----CC--ChhhhHHHHHHHHHHHHcCCeeeeecCC--CCC
Q 014137 103 QYHRYKED-VDIMANLNFDAYRFSISWSRIF--PYGTG-----KV--NWKGVAYYNQLINYLLKRGITPYANLYH--YDL 170 (430)
Q Consensus 103 ~Y~~y~eD-i~l~~~lG~~~~Rfsi~Wsri~--P~~~g-----~~--n~~~~~~y~~~i~~l~~~gi~p~vtL~H--~d~ 170 (430)
.|.-..++ +..+|+||++++-+.=-...-. ..|-. .+ .....+=++++|++|.++||.+|+++-+ ..-
T Consensus 248 ty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~ 327 (758)
T PLN02447 248 SYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASK 327 (758)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEeccccccc
Confidence 34443333 8999999999998764332211 00000 00 0111245899999999999999998653 211
Q ss_pred -------------cHHHHHhcCC----C-------CChHhHHHHHHHHHHHHHHh
Q 014137 171 -------------PEALEKKYNG----L-------LSKRVVKDFADYADFCFKTF 201 (430)
Q Consensus 171 -------------P~~l~~~~gg----~-------~~~~~~~~f~~ya~~~~~~f 201 (430)
+.|+...-.| | .++++.+.+.+=++.-+++|
T Consensus 328 ~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey 382 (758)
T PLN02447 328 NTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEY 382 (758)
T ss_pred cccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHh
Confidence 1222210011 2 24567777777777777777
No 91
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=53.02 E-value=88 Score=31.29 Aligned_cols=107 Identities=17% Similarity=0.155 Sum_probs=60.1
Q ss_pred HHHHHHHHhCCC--CEEEeccCCcccccCC--CC--CCChhhhHHHHHHHHHHHHcCCeeeeecCCC---CCcHHHHHh-
Q 014137 108 KEDVDIMANLNF--DAYRFSISWSRIFPYG--TG--KVNWKGVAYYNQLINYLLKRGITPYANLYHY---DLPEALEKK- 177 (430)
Q Consensus 108 ~eDi~l~~~lG~--~~~Rfsi~Wsri~P~~--~g--~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---d~P~~l~~~- 177 (430)
.+-++-+++.|+ +++=+.+.|....... .| .+|.+-.---+++|++|+++|++.++.++-+ +.|..-+-+
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~ 106 (317)
T cd06598 27 DDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVK 106 (317)
T ss_pred HHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHh
Confidence 344455555554 3555555564322210 01 2233333334789999999999988877644 333321100
Q ss_pred --c-------------------C---CCCChHhHHHHHHHHHHHHHHhCCcce-eEeeccCcchh
Q 014137 178 --Y-------------------N---GLLSKRVVKDFADYADFCFKTFGDRVK-NWMTFNEPRVV 217 (430)
Q Consensus 178 --~-------------------g---g~~~~~~~~~f~~ya~~~~~~fgd~v~-~w~t~NEp~~~ 217 (430)
| + .++||+..+.|.+..+.+ ... -|. +|.=+|||..+
T Consensus 107 ~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~--Gvdg~w~D~~Ep~~~ 168 (317)
T cd06598 107 AGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQ--GVTGWWGDLGEPEVH 168 (317)
T ss_pred CCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhC--CccEEEecCCCcccc
Confidence 0 1 356899888887776664 223 344 58899999654
No 92
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=52.83 E-value=41 Score=34.47 Aligned_cols=58 Identities=19% Similarity=0.146 Sum_probs=46.0
Q ss_pred HHHHHHHHhCCCCEEEeccCCcccccCCC-CCCChhhhHHHHHHHHHHHHcCCeeeeec
Q 014137 108 KEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANL 165 (430)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 165 (430)
++|++.+.+.|++.+|+.++-|.+.-... +.=-.+.++...+.|+.++++|+++.+++
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ 133 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGG 133 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 89999999999999999998776533321 33335678889999999999999977665
No 93
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=52.70 E-value=1e+02 Score=30.67 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=31.6
Q ss_pred ccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCC
Q 014137 132 FPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHY 168 (430)
Q Consensus 132 ~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~ 168 (430)
.|...|-++.+.++.++++.+.++++|-..++=|.|-
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~ 100 (327)
T cd02803 64 YPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHA 100 (327)
T ss_pred CCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCC
Confidence 4443367888999999999999999999999999994
No 94
>PRK10785 maltodextrin glucosidase; Provisional
Probab=52.68 E-value=24 Score=38.68 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=39.3
Q ss_pred cHHHHHHHHhCCCCEEEeccCCcccccCCCC-------CCCh--hhhHHHHHHHHHHHHcCCeeeeecC
Q 014137 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTG-------KVNW--KGVAYYNQLINYLLKRGITPYANLY 166 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g-------~~n~--~~~~~y~~~i~~l~~~gi~p~vtL~ 166 (430)
..+-++-+|+||++++=++=-... |..-| .+|+ -..+=+++|++++.++||++|+++-
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s--~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTA--PSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccC--CCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 456689999999999987742221 11101 1221 1345689999999999999999753
No 95
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=52.18 E-value=82 Score=31.80 Aligned_cols=71 Identities=17% Similarity=0.121 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCeeeeecCCCCC-----cHHHHHh------------------------cCCCCChHhHHHHHHHHHHHH
Q 014137 148 NQLINYLLKRGITPYANLYHYDL-----PEALEKK------------------------YNGLLSKRVVKDFADYADFCF 198 (430)
Q Consensus 148 ~~~i~~l~~~gi~p~vtL~H~d~-----P~~l~~~------------------------~gg~~~~~~~~~f~~ya~~~~ 198 (430)
+++|++|+++|++.++.++-+-. |..-+-+ +-.++||+.++.|.+..+.+.
T Consensus 67 ~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06603 67 EKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDK 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHh
Confidence 77999999999998887764422 2221110 013678999999988888766
Q ss_pred HHhCC-cceeEeeccCcchhh
Q 014137 199 KTFGD-RVKNWMTFNEPRVVA 218 (430)
Q Consensus 199 ~~fgd-~v~~w~t~NEp~~~~ 218 (430)
...+. -+-.|+=+|||.++.
T Consensus 147 ~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 147 YKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred hcccCCCceEEeccCCccccC
Confidence 54332 356799999998764
No 96
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=51.58 E-value=39 Score=33.08 Aligned_cols=55 Identities=11% Similarity=0.127 Sum_probs=39.9
Q ss_pred cHHHHHHHHhCCCCEEEeccCCc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeee
Q 014137 107 YKEDVDIMANLNFDAYRFSISWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYAN 164 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Ws-ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 164 (430)
-+|.++.||++|++.+-++++-+ ++.+.-.+. ..++.+.+.++.++++||...++
T Consensus 122 ~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~---~s~~~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 122 DPEQAKRLKDAGLDYYNHNLDTSQEFYSNIIST---HTYDDRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCHHHHhhccCC---CCHHHHHHHHHHHHHcCCEEEEe
Confidence 38999999999999999998822 133221121 24567889999999999986544
No 97
>PRK14705 glycogen branching enzyme; Provisional
Probab=51.33 E-value=73 Score=38.04 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=55.8
Q ss_pred HHH-HHHHHhCCCCEEEecc--------CCcccccCCCCCC--ChhhhHHHHHHHHHHHHcCCeeeeec--CCCCCcHHH
Q 014137 108 KED-VDIMANLNFDAYRFSI--------SWSRIFPYGTGKV--NWKGVAYYNQLINYLLKRGITPYANL--YHYDLPEAL 174 (430)
Q Consensus 108 ~eD-i~l~~~lG~~~~Rfsi--------~Wsri~P~~~g~~--n~~~~~~y~~~i~~l~~~gi~p~vtL--~H~d~P~~l 174 (430)
.+. ++.+|+||++++=+.= +|- -.|.+--.+ .....+=++.+|++|.++||.+|+++ .|+..=.|.
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~ 846 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWA 846 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhh
Confidence 334 6899999999997643 231 111110000 01123448999999999999999984 354211111
Q ss_pred HHhc----------------CC-------CCChHhHHHHHHHHHHHHHHhC
Q 014137 175 EKKY----------------NG-------LLSKRVVKDFADYADFCFKTFG 202 (430)
Q Consensus 175 ~~~~----------------gg-------~~~~~~~~~f~~ya~~~~~~fg 202 (430)
...+ .. +.++++.+.+.+=+..-+++|+
T Consensus 847 l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 847 LAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred hhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1011 11 2356778888888888888884
No 98
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=51.22 E-value=62 Score=32.70 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=49.9
Q ss_pred HHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCc
Q 014137 111 VDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP 171 (430)
Q Consensus 111 i~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P 171 (430)
++.+|++|-++..|=+-|. |+++..+|..-.++.+++.++|++.+|--++=+..+|.+
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~ 168 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEPDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEK 168 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCc
Confidence 5889999999999998887 565456899899999999999999999988887766654
No 99
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=51.15 E-value=63 Score=32.71 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=50.8
Q ss_pred HHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCc
Q 014137 110 DVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP 171 (430)
Q Consensus 110 Di~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P 171 (430)
+++.+|++|-++..|=+-|. |+++-.+|..-.++.+++.++|++.+|--++=+..+|.+
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~ 170 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYDER 170 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCc
Confidence 46899999999999998887 565456888889999999999999999999988777654
No 100
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=51.08 E-value=1.1e+02 Score=30.76 Aligned_cols=70 Identities=19% Similarity=0.166 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCCeeeeecCCCC-----CcHHHHHh------------------------cCCCCChHhHHHHHHHHHHH
Q 014137 147 YNQLINYLLKRGITPYANLYHYD-----LPEALEKK------------------------YNGLLSKRVVKDFADYADFC 197 (430)
Q Consensus 147 y~~~i~~l~~~gi~p~vtL~H~d-----~P~~l~~~------------------------~gg~~~~~~~~~f~~ya~~~ 197 (430)
-+++|++|+++|++.++.+.-+- .+...+.. +-.|+||+.++.|.+..+.+
T Consensus 66 p~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~ 145 (317)
T cd06600 66 PKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEW 145 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHH
Confidence 47899999999999877664331 12221110 01368899999998877776
Q ss_pred HHHhCCcceeEeeccCcchh
Q 014137 198 FKTFGDRVKNWMTFNEPRVV 217 (430)
Q Consensus 198 ~~~fgd~v~~w~t~NEp~~~ 217 (430)
....|= .-+|+=+|||..+
T Consensus 146 ~~~~gv-dg~w~D~~Ep~~~ 164 (317)
T cd06600 146 LNSQGV-DGIWLDMNEPSDF 164 (317)
T ss_pred hhcCCC-ceEEeeCCCCccH
Confidence 655442 3468899999643
No 101
>PRK03705 glycogen debranching enzyme; Provisional
Probab=50.61 E-value=33 Score=38.17 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=36.6
Q ss_pred HHHHHhCCCCEEEeccCC------------------------cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeec
Q 014137 111 VDIMANLNFDAYRFSISW------------------------SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (430)
Q Consensus 111 i~l~~~lG~~~~Rfsi~W------------------------sri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 165 (430)
|+-+|+||++++=+.=-- -.+.|.= |.-....++=+++||++|.++||++|+++
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y-gt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY-ASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc-CCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 899999999999764311 1122211 22111235678999999999999999974
No 102
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=49.93 E-value=40 Score=34.32 Aligned_cols=92 Identities=15% Similarity=0.218 Sum_probs=54.4
Q ss_pred HHHHHHHHhCCCCEEEecc-CCc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCeee-eecCCCCCcHHHHHhcCCCCCh
Q 014137 108 KEDVDIMANLNFDAYRFSI-SWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEALEKKYNGLLSK 184 (430)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi-~Ws-ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~d~P~~l~~~~gg~~~~ 184 (430)
++.++.|+++|++.+-+++ +-+ ++...- |.. -..+-+.+.|+.+++.|+.++ ++| -+++|.
T Consensus 100 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l-gR~--~~~~~~~~ai~~l~~~G~~~v~~dl-i~GlPg------------ 163 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQSFRDDKLLFL-GRQ--HSAKNIAPAIETALKSGIENISLDL-MYGLPL------------ 163 (360)
T ss_pred HHHHHHHHHcCCCEEEEecccCChHHHHHh-CCC--CCHHHHHHHHHHHHHcCCCeEEEec-cCCCCC------------
Confidence 7889999999999666666 332 233221 332 124567889999999999855 444 345552
Q ss_pred HhHHHHHHHHHHHHHHhCCcceeEeeccCcc
Q 014137 185 RVVKDFADYADFCFKTFGDRVKNWMTFNEPR 215 (430)
Q Consensus 185 ~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~ 215 (430)
++.+.+.+-.+.+.+.=-+.+..+...=||+
T Consensus 164 qt~~~~~~~l~~~~~l~~~~is~y~l~~~~g 194 (360)
T TIGR00539 164 QTLNSLKEELKLAKELPINHLSAYALSVEPN 194 (360)
T ss_pred CCHHHHHHHHHHHHccCCCEEEeecceEcCC
Confidence 2345555555554442223455554444554
No 103
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=49.87 E-value=50 Score=34.04 Aligned_cols=58 Identities=19% Similarity=0.147 Sum_probs=47.1
Q ss_pred HHHHHHHHhCCCCEEEeccCCcccccCCC-CCCChhhhHHHHHHHHHHHHcCCeeeeec
Q 014137 108 KEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANL 165 (430)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 165 (430)
++|++.+.+.|++.+|++++-|.+.-... +.--++.++...+.++.+++.|+++.++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 88999999999999999998777643321 33346678899999999999999988874
No 104
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=49.66 E-value=27 Score=39.93 Aligned_cols=56 Identities=23% Similarity=0.240 Sum_probs=42.1
Q ss_pred ccccHHHHHHHHhCCCCEEEeccCC---------------cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeec
Q 014137 104 YHRYKEDVDIMANLNFDAYRFSISW---------------SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (430)
Q Consensus 104 Y~~y~eDi~l~~~lG~~~~Rfsi~W---------------sri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 165 (430)
+....+-+..+++||++++=+|=-. .+|.|+- | +.+=+++++++++++||.+|+++
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l-G-----t~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL-G-----GEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC-C-----CHHHHHHHHHHHHHCCCEEEEEe
Confidence 3446788999999999998776543 3333332 2 34568999999999999999975
No 105
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=49.56 E-value=76 Score=32.17 Aligned_cols=72 Identities=17% Similarity=0.325 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCCeeeeecCCC-CCcHHHHH--hcCCCCChHhHHHHHHHHHHHHHHhCCcceeEeeccCcchhhccc
Q 014137 148 NQLINYLLKRGITPYANLYHY-DLPEALEK--KYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALG 221 (430)
Q Consensus 148 ~~~i~~l~~~gi~p~vtL~H~-d~P~~l~~--~~gg~~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~~~~g 221 (430)
+.++++|++.|++.++.+.-+ ..-..+.. .+-.|+|++..+.|.+..+.+.+ .| -.-+|+=+|||.++...+
T Consensus 67 ~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~G-v~~~W~DmnEp~~~~~~~ 141 (332)
T cd06601 67 KEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IG-LEFVWQDMTTPAIMPSYG 141 (332)
T ss_pred HHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CC-CceeecCCCCcccccCCC
Confidence 789999999999887765311 10000000 01247788888877665544332 23 234699999999876533
No 106
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=49.01 E-value=59 Score=33.70 Aligned_cols=50 Identities=8% Similarity=0.155 Sum_probs=39.4
Q ss_pred ccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeec
Q 014137 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (430)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 165 (430)
.|++||++.+++||++|=+.|- .. ...+. +....+++...+.|.+.++.+
T Consensus 18 dw~~di~~A~~~GIDgFaLNig------~~-d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 18 DWEADIRLAQAAGIDGFALNIG------SS-DSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHcCCCEEEEecc------cC-CcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 4899999999999999999985 11 22333 557888999999998888776
No 107
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=47.99 E-value=30 Score=39.41 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=42.4
Q ss_pred ccccHHHHHHHHhCCCCEEEeccCCccccc--CCC-----CCCCh--hhhHHHHHHHHHHHHcCCeeeeec
Q 014137 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFP--YGT-----GKVNW--KGVAYYNQLINYLLKRGITPYANL 165 (430)
Q Consensus 104 Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P--~~~-----g~~n~--~~~~~y~~~i~~l~~~gi~p~vtL 165 (430)
+....+-++-+++||++++=+|=-+.-.-. .|. ..+|+ .+.+=+++++++++++||..|+++
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 344678899999999999987765432110 010 11221 135668999999999999999985
No 108
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=47.93 E-value=1.4e+02 Score=29.19 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=46.4
Q ss_pred HHHHHHHHhCCCCEEEeccCCcccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeeeecCCC
Q 014137 108 KEDVDIMANLNFDAYRFSISWSRIFPYG-TGKVNWKGVAYYNQLINYLLKRGITPYANLYHY 168 (430)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~ 168 (430)
+.+++.+++.|++.+|+.++=|...-.. .|.--++.++...+.++.+++.|+++.++.-+|
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~ 142 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF 142 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec
Confidence 3689999999999999988655443221 133345678899999999999999998866555
No 109
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=47.45 E-value=81 Score=33.26 Aligned_cols=107 Identities=13% Similarity=0.124 Sum_probs=65.4
Q ss_pred cHHHHHHHHhCCCCEEEecc-CCcccccCCCCCCChhhhHHHHHHHHHHHHcC-CeeeeecCCCCCcHHHHHhcCCCCCh
Q 014137 107 YKEDVDIMANLNFDAYRFSI-SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRG-ITPYANLYHYDLPEALEKKYNGLLSK 184 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi-~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~g-i~p~vtL~H~d~P~~l~~~~gg~~~~ 184 (430)
-+|.++.|+++|+|-+-+++ |-+.-.-+.-|+.. ..+-..+.|+.+++.| +.+.++|- +++|.
T Consensus 162 t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~--~~~~~~~~i~~l~~~g~~~v~~DlI-~GlPg------------ 226 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKD--DREEVLARLEELVARDRAAVVCDLI-FGLPG------------ 226 (449)
T ss_pred CHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCC--CHHHHHHHHHHHHhCCCCcEEEEEE-eeCCC------------
Confidence 36889999999999877777 44322111113322 1245677899999999 56666664 45552
Q ss_pred HhHHHHHHHHHHHHHHhCCcceeEeeccCcchhhccccCCCcCC
Q 014137 185 RVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFFA 228 (430)
Q Consensus 185 ~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~~~~gy~~G~~~ 228 (430)
++.+.|.+=.+.+.+-=-+.|..+...-||+......+..|..+
T Consensus 227 qT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 227 QTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 23445555455544433467888888888886544334445544
No 110
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=47.42 E-value=67 Score=34.03 Aligned_cols=93 Identities=12% Similarity=0.022 Sum_probs=60.0
Q ss_pred HHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcH----HHH---Hh---
Q 014137 108 KEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPE----ALE---KK--- 177 (430)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~----~l~---~~--- 177 (430)
++||+...+.|++.+|+.++-+.+. -..+.|+.+++.|+...+++..-+-|. .+. ++
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~-------------n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~ 165 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVR-------------NLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQE 165 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHH-------------HHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHH
Confidence 5667999999999999998665541 256688888899988877776655551 111 11
Q ss_pred ----------cCCCCChHhHHHHHHHHHHHHHHhCCcceeEeeccCcchh
Q 014137 178 ----------YNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVV 217 (430)
Q Consensus 178 ----------~gg~~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~ 217 (430)
-.|..+|.. ..+..+.+-++++ ..-.+.+.|-..+.
T Consensus 166 ~Gad~I~i~Dt~G~l~P~~---v~~lv~alk~~~~-~pi~~H~Hnt~GlA 211 (448)
T PRK12331 166 MGADSICIKDMAGILTPYV---AYELVKRIKEAVT-VPLEVHTHATSGIA 211 (448)
T ss_pred cCCCEEEEcCCCCCCCHHH---HHHHHHHHHHhcC-CeEEEEecCCCCcH
Confidence 045666544 3445555566675 33356777776653
No 111
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=47.37 E-value=76 Score=36.05 Aligned_cols=101 Identities=20% Similarity=0.275 Sum_probs=64.0
Q ss_pred CCCCEEEeccC-CcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCC---CCcHHHH--Hh-------------
Q 014137 117 LNFDAYRFSIS-WSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHY---DLPEALE--KK------------- 177 (430)
Q Consensus 117 lG~~~~Rfsi~-Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---d~P~~l~--~~------------- 177 (430)
+=++++++.+. |.+ ..+.=.+|+.-.---+.||+.|+++||+.++-+... |.|+.=+ ++
T Consensus 294 IP~d~~~lD~~~~~~--~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~~ 371 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIYQ 371 (772)
T ss_pred CcceEEEEeehhhhc--cccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEee
Confidence 45779999995 887 222123444444445699999999999999877642 3333211 11
Q ss_pred ---------cCCCCChHhHHHHHHHHHHHHHHhCCcceeEeeccCcchhhcc
Q 014137 178 ---------YNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAAL 220 (430)
Q Consensus 178 ---------~gg~~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~~~~ 220 (430)
+-.++||+.+++|.+....-+..+| -.-+|.=+|||.+....
T Consensus 372 ~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 372 ADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDGD 422 (772)
T ss_pred ecccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCcccccc
Confidence 0126799999998873333233333 25679999999987544
No 112
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=47.10 E-value=63 Score=31.75 Aligned_cols=84 Identities=12% Similarity=0.127 Sum_probs=60.4
Q ss_pred cHHHHHHHHhCCCCEEEeccCCcccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeeeecC-CCCCcHHHHHhcCCCCCh
Q 014137 107 YKEDVDIMANLNFDAYRFSISWSRIFPYG-TGKVNWKGVAYYNQLINYLLKRGITPYANLY-HYDLPEALEKKYNGLLSK 184 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-H~d~P~~l~~~~gg~~~~ 184 (430)
-++|++...+.|++.+++.++=|...-.. -+.--.+.++...+.++.++++|+++.+++. .|+.| ++|-.
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~------~~~~~-- 146 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCP------YEGEV-- 146 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCC------CCCCC--
Confidence 37899999999999999998666543221 1333356788999999999999999988876 35555 23322
Q ss_pred HhHHHHHHHHHHHHH
Q 014137 185 RVVKDFADYADFCFK 199 (430)
Q Consensus 185 ~~~~~f~~ya~~~~~ 199 (430)
..+.+.++++.+.+
T Consensus 147 -~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 -PPERVAEVAERLLD 160 (274)
T ss_pred -CHHHHHHHHHHHHH
Confidence 35677777777654
No 113
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=45.32 E-value=47 Score=33.73 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=50.3
Q ss_pred HHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChHhH
Q 014137 108 KEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVV 187 (430)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~~ 187 (430)
..-|++|.+.|++-+=.|+ +.|++ -+...++.+.++++.+.+.|+++||+.. |+-|.+ -||. ...+
T Consensus 19 ~~Yi~~~~~~Gf~~IFtsl----~~~~~---~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~--l~~S-~~~l 84 (360)
T COG3589 19 IAYIDRMHKYGFKRIFTSL----LIPEE---DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE--LNIS-LDNL 84 (360)
T ss_pred HHHHHHHHHcCccceeeec----ccCCc---hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh--cCCC-hHHH
Confidence 3447899999998665554 33443 2334689999999999999999999995 887765 3443 2344
Q ss_pred HHHHHH
Q 014137 188 KDFADY 193 (430)
Q Consensus 188 ~~f~~y 193 (430)
+.|.+.
T Consensus 85 ~~f~e~ 90 (360)
T COG3589 85 SRFQEL 90 (360)
T ss_pred HHHHHh
Confidence 555444
No 114
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=45.05 E-value=75 Score=32.39 Aligned_cols=52 Identities=13% Similarity=0.138 Sum_probs=43.8
Q ss_pred HHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeec
Q 014137 111 VDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (430)
Q Consensus 111 i~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 165 (430)
++.++++|.+++-+-+-|. |+....+|..-+++..++.++|++.||.-++-+
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDEDDAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 5778999999999998887 553244688889999999999999999988854
No 115
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=44.62 E-value=2.3e+02 Score=27.35 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=37.4
Q ss_pred HHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeec
Q 014137 108 KEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (430)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 165 (430)
.+|++..++.|++.+|+.++.+.+. -..+.++.++++|++..+++
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~~-------------~~~~~i~~ak~~G~~v~~~~ 132 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEAD-------------VSEQHIGAARKLGMDVVGFL 132 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhHH-------------HHHHHHHHHHHCCCeEEEEE
Confidence 6999999999999999988776542 24778888999999888887
No 116
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=44.56 E-value=1.7e+02 Score=29.87 Aligned_cols=90 Identities=18% Similarity=0.220 Sum_probs=67.6
Q ss_pred CCCCcccccccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHH
Q 014137 97 GDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEK 176 (430)
Q Consensus 97 ~d~A~d~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~ 176 (430)
+-+|.=||+ |+== -...+.|++.+|+. + |.+-.+ +....+++.++++||..=+..+|-.+.+-+.+
T Consensus 76 PLVaDiHf~-~rla-~~~~~~g~~k~RIN---------P-GNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ 141 (361)
T COG0821 76 PLVADIHFD-YRLA-LEAAECGVDKVRIN---------P-GNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLE 141 (361)
T ss_pred CEEEEeecc-HHHH-HHhhhcCcceEEEC---------C-cccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHH
Confidence 334555776 4433 33456779999975 3 555433 37899999999999999999999999999999
Q ss_pred hcCCCCChHhHHHHHHHHHHHHHH
Q 014137 177 KYNGLLSKRVVKDFADYADFCFKT 200 (430)
Q Consensus 177 ~~gg~~~~~~~~~f~~ya~~~~~~ 200 (430)
+|++-+.+..++--.++|+.+-+.
T Consensus 142 ky~~pt~ealveSAl~~a~~~e~l 165 (361)
T COG0821 142 KYGGPTPEALVESALEHAELLEEL 165 (361)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHC
Confidence 998777777777777777775443
No 117
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=42.75 E-value=1.6e+02 Score=29.50 Aligned_cols=71 Identities=10% Similarity=0.087 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCCeeeeecCCC---CCcHHHHHh---c--------------------CCCCChHhHHHHHHHHHHHHH
Q 014137 146 YYNQLINYLLKRGITPYANLYHY---DLPEALEKK---Y--------------------NGLLSKRVVKDFADYADFCFK 199 (430)
Q Consensus 146 ~y~~~i~~l~~~gi~p~vtL~H~---d~P~~l~~~---~--------------------gg~~~~~~~~~f~~ya~~~~~ 199 (430)
--+++|++|+++|++.++.+.-+ +.+.+-+-+ | -.|+||+.++.|.+..+..+.
T Consensus 67 dp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~ 146 (319)
T cd06591 67 DPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYY 146 (319)
T ss_pred CHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhh
Confidence 35899999999999988766422 122211100 0 126788888887766554444
Q ss_pred HhCCcceeEeeccCcchh
Q 014137 200 TFGDRVKNWMTFNEPRVV 217 (430)
Q Consensus 200 ~fgd~v~~w~t~NEp~~~ 217 (430)
..| ---+|+=+|||..+
T Consensus 147 ~~G-vdg~w~D~~Ep~~~ 163 (319)
T cd06591 147 DKG-VDAWWLDAAEPEYS 163 (319)
T ss_pred cCC-CcEEEecCCCCCcc
Confidence 443 24568999999865
No 118
>PRK12568 glycogen branching enzyme; Provisional
Probab=42.27 E-value=33 Score=38.55 Aligned_cols=93 Identities=14% Similarity=0.160 Sum_probs=57.5
Q ss_pred ccccHHH-HHHHHhCCCCEEEecc--------CCc-------ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecC-
Q 014137 104 YHRYKED-VDIMANLNFDAYRFSI--------SWS-------RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY- 166 (430)
Q Consensus 104 Y~~y~eD-i~l~~~lG~~~~Rfsi--------~Ws-------ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~- 166 (430)
|.-..+. |..+|+||++++=+.= +|- .+.|.- |. .+=++.+|++|.++||.+|+++-
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~-G~-----~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARH-GS-----PDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCccc-CC-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 4444444 6899999999987543 231 111111 33 34589999999999999999853
Q ss_pred -CCCC----------cHHHHH------hcCCC-------CChHhHHHHHHHHHHHHHHhC
Q 014137 167 -HYDL----------PEALEK------KYNGL-------LSKRVVKDFADYADFCFKTFG 202 (430)
Q Consensus 167 -H~d~----------P~~l~~------~~gg~-------~~~~~~~~f~~ya~~~~~~fg 202 (430)
|+.- +...+. .+..| .++++.+.+.+=+..-+++|+
T Consensus 342 nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 342 AHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred ccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 4321 110100 01123 356778888888888888874
No 119
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=42.00 E-value=20 Score=27.15 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=32.1
Q ss_pred cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCC
Q 014137 129 SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHY 168 (430)
Q Consensus 129 sri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~ 168 (430)
+++-|+. +.=-+++++..-+++..|.++|| +.+.|++-
T Consensus 19 s~l~p~~-~~d~~kaldiCaeIL~cLE~R~i-sWl~LFql 56 (64)
T PF03511_consen 19 SYLAPKE-GADSLKALDICAEILGCLEKRKI-SWLVLFQL 56 (64)
T ss_pred HhcCccc-ccccHHHHHHHHHHHHHHHhCCC-cHHHhhhc
Confidence 5678886 66667899999999999999999 88888764
No 120
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=40.31 E-value=43 Score=40.03 Aligned_cols=62 Identities=13% Similarity=0.211 Sum_probs=40.0
Q ss_pred ccccH--HHHHHHHhCCCCEEEeccCCccccc-----C------CCC-----CCCh--h--hhHHHHHHHHHHHHcCCee
Q 014137 104 YHRYK--EDVDIMANLNFDAYRFSISWSRIFP-----Y------GTG-----KVNW--K--GVAYYNQLINYLLKRGITP 161 (430)
Q Consensus 104 Y~~y~--eDi~l~~~lG~~~~Rfsi~Wsri~P-----~------~~g-----~~n~--~--~~~~y~~~i~~l~~~gi~p 161 (430)
|.... +.|+-+|+||++++=+.=-.....- . |.. .+|+ . ..+=+++||++|.++||++
T Consensus 184 ~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~V 263 (1221)
T PRK14510 184 FAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAV 263 (1221)
T ss_pred HhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEE
Confidence 44444 6688999999999977543222110 0 000 1111 1 4566899999999999999
Q ss_pred eeec
Q 014137 162 YANL 165 (430)
Q Consensus 162 ~vtL 165 (430)
|+++
T Consensus 264 ILDv 267 (1221)
T PRK14510 264 ILDV 267 (1221)
T ss_pred EEEE
Confidence 9974
No 121
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=39.74 E-value=1e+02 Score=33.90 Aligned_cols=93 Identities=14% Similarity=0.120 Sum_probs=59.2
Q ss_pred HHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCc----HHHHHh------
Q 014137 108 KEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP----EALEKK------ 177 (430)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P----~~l~~~------ 177 (430)
++|++..++.|++.+|+..+.+.+ +-....++..+++|+...+++.+-+.| ..+.+.
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~ 160 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDP-------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLE 160 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 455899999999999998766553 235677778888888877776654455 111110
Q ss_pred ----------cCCCCChHhHHHHHHHHHHHHHHhCCcceeEeeccCcchh
Q 014137 178 ----------YNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVV 217 (430)
Q Consensus 178 ----------~gg~~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~ 217 (430)
-.|...|. ...+..+.+-++++ ..-...+.|-..+.
T Consensus 161 ~Gad~I~i~Dt~G~~~P~---~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla 206 (582)
T TIGR01108 161 MGVDSICIKDMAGILTPK---AAYELVSALKKRFG-LPVHLHSHATTGMA 206 (582)
T ss_pred cCCCEEEECCCCCCcCHH---HHHHHHHHHHHhCC-CceEEEecCCCCcH
Confidence 04555554 44555556666775 33357788887654
No 122
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=39.44 E-value=1.5e+02 Score=31.13 Aligned_cols=88 Identities=16% Similarity=0.240 Sum_probs=57.6
Q ss_pred HHHHHHHHhCCCCEEEecc--CCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeee-eecCCCCCcHH--HHHhcCCCC
Q 014137 108 KEDVDIMANLNFDAYRFSI--SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEA--LEKKYNGLL 182 (430)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi--~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~d~P~~--l~~~~gg~~ 182 (430)
.+|+..++++.--..|+++ .|.. +|.+.|+ +.++++||..- ++..-|..|+. -.-++|...
T Consensus 73 i~D~~~v~~Lt~~~~~v~LH~~wd~--------vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSLt 138 (412)
T TIGR02629 73 LEDCAVIQQLTRATPNVSLHIPWDK--------ADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSLS 138 (412)
T ss_pred HHHHHHHHhhcCCCCCccccCCCCc--------CCHHHHH------HHHHHcCCccceeccccccCcccccccccccccC
Confidence 7788888888766666665 7722 3654444 88999999988 77766766632 111346677
Q ss_pred Ch--HhHHHHHHHHHHH---HHHhCCc-ceeEe
Q 014137 183 SK--RVVKDFADYADFC---FKTFGDR-VKNWM 209 (430)
Q Consensus 183 ~~--~~~~~f~~ya~~~---~~~fgd~-v~~w~ 209 (430)
|| ++.+...+.+..| .++.|.+ |..|+
T Consensus 139 nPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW~ 171 (412)
T TIGR02629 139 HTDAATRRQAVEHNLECIEIGKALGSKALTVWI 171 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 65 5666667776665 5667664 45554
No 123
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=39.36 E-value=76 Score=30.15 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=42.8
Q ss_pred cccccHHHHHHHHhCCCCEEEeccCCcccccCCC--CCCChhhhHHHHHHHHHHHHcCCeeeee-cCCCCCc
Q 014137 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGT--GKVNWKGVAYYNQLINYLLKRGITPYAN-LYHYDLP 171 (430)
Q Consensus 103 ~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~--g~~n~~~~~~y~~~i~~l~~~gi~p~vt-L~H~d~P 171 (430)
+-.++++=|++++++|.+.+|+...+. |... .......++..+++.+.+.+.||...+= ++|++.|
T Consensus 82 ~~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 82 FREGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 345677789999999999998643321 1110 1122334566788888899999998774 3455544
No 124
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=39.15 E-value=1.1e+02 Score=29.29 Aligned_cols=75 Identities=13% Similarity=0.315 Sum_probs=49.3
Q ss_pred cccHHHHHHHHhCCCCEEEe----------------------ccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeee
Q 014137 105 HRYKEDVDIMANLNFDAYRF----------------------SISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY 162 (430)
Q Consensus 105 ~~y~eDi~l~~~lG~~~~Rf----------------------si~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~ 162 (430)
-.-+.-|++||+||.+++.| ++ | +||.| .+| ++.+..+++.+++.|++-+
T Consensus 135 V~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG--GId---l~Nf~~I~~i~ldaGv~kv 206 (236)
T TIGR03581 135 VPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG--GID---LDNFEEIVQIALDAGVEKV 206 (236)
T ss_pred eeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC--Ccc---HHhHHHHHHHHHHcCCCee
Confidence 34577799999999999875 33 3 57774 466 4778999999999999866
Q ss_pred eecCCCCCcHHHHHhcCCCCChHhHHHHH
Q 014137 163 ANLYHYDLPEALEKKYNGLLSKRVVKDFA 191 (430)
Q Consensus 163 vtL~H~d~P~~l~~~~gg~~~~~~~~~f~ 191 (430)
+ .|- + ..+.|+-.|-+.++-+....
T Consensus 207 i--PHI-Y-ssiIDk~tG~TrpedV~~l~ 231 (236)
T TIGR03581 207 I--PHV-Y-SSIIDKETGNTRVEDVKQLL 231 (236)
T ss_pred c--ccc-c-eeccccccCCCCHHHHHHHH
Confidence 3 221 0 01122225666666555443
No 125
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=39.13 E-value=93 Score=30.12 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCCeeeeecC
Q 014137 145 AYYNQLINYLLKRGITPYANLY 166 (430)
Q Consensus 145 ~~y~~~i~~l~~~gi~p~vtL~ 166 (430)
+.++.+|+.-+++|..+|+||-
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~p 45 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLP 45 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-
T ss_pred HHHHHHHHHhhhcCcceeEeec
Confidence 6789999999999999999985
No 126
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=39.12 E-value=80 Score=30.68 Aligned_cols=80 Identities=15% Similarity=0.062 Sum_probs=53.6
Q ss_pred HHHHHHHHhCC----CCEEEeccCCcccccCCC-CCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCC
Q 014137 108 KEDVDIMANLN----FDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLL 182 (430)
Q Consensus 108 ~eDi~l~~~lG----~~~~Rfsi~Wsri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~ 182 (430)
.+|++...+.| ++.+|+.++.|.+.-... +.=-.+.++-..+.++.+++.|++..+++.+ .+..
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~~ 140 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAED-----------ATRT 140 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeec-----------CCCC
Confidence 88999999999 999999876665532211 3222346788889999999999987754421 2222
Q ss_pred ChHhHHHHHHHHHHHHHHhC
Q 014137 183 SKRVVKDFADYADFCFKTFG 202 (430)
Q Consensus 183 ~~~~~~~f~~ya~~~~~~fg 202 (430)
..+.+.+.++.+.+ +|
T Consensus 141 ---~~~~~~~~~~~~~~-~G 156 (268)
T cd07940 141 ---DLDFLIEVVEAAIE-AG 156 (268)
T ss_pred ---CHHHHHHHHHHHHH-cC
Confidence 25666777776643 44
No 127
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=38.18 E-value=2.4e+02 Score=28.19 Aligned_cols=69 Identities=16% Similarity=0.102 Sum_probs=43.4
Q ss_pred HHHHHHHHHHcCCeeeeecCCCC---CcHHHHHh---c----------------------CCCCChHhHHHHHHHHHHHH
Q 014137 147 YNQLINYLLKRGITPYANLYHYD---LPEALEKK---Y----------------------NGLLSKRVVKDFADYADFCF 198 (430)
Q Consensus 147 y~~~i~~l~~~gi~p~vtL~H~d---~P~~l~~~---~----------------------gg~~~~~~~~~f~~ya~~~~ 198 (430)
-+++|++|+++|++.++.++-+- .|..-+-+ | -.++||+..+.|.+..+..+
T Consensus 75 p~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 154 (317)
T cd06599 75 PAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEAL 154 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHH
Confidence 47899999999999888665432 22211100 0 01468888888877665555
Q ss_pred HHhCCcceeEeeccCcch
Q 014137 199 KTFGDRVKNWMTFNEPRV 216 (430)
Q Consensus 199 ~~fgd~v~~w~t~NEp~~ 216 (430)
...| -.-+|+=+|||.+
T Consensus 155 ~~~G-vdg~w~D~~E~~~ 171 (317)
T cd06599 155 LDLG-IDSTWNDNNEYEI 171 (317)
T ss_pred hcCC-CcEEEecCCCCcc
Confidence 4443 2356888999963
No 128
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=38.01 E-value=4.6e+02 Score=26.81 Aligned_cols=191 Identities=19% Similarity=0.173 Sum_probs=102.0
Q ss_pred CCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcH---------------HHHHh--------------cCCC----C-
Q 014137 137 GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPE---------------ALEKK--------------YNGL----L- 182 (430)
Q Consensus 137 g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~---------------~l~~~--------------~gg~----~- 182 (430)
+-+|.+-+.-++++.+.++++|-..++=|+|-.--. .+... ..+- .
T Consensus 71 ~l~~d~~i~~~~~lad~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt 150 (362)
T PRK10605 71 GLHSPEQIAAWKKITAGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALE 150 (362)
T ss_pred cccCHHHHHHHHHHHHHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCC
Confidence 567888899999999999999999999999942210 00000 0000 0
Q ss_pred ---ChHhHHHHHHHHHHHHHHhCCcceeEeeccCcchhhccccCCCcC-CCCC--CCcCCCcccCCCCCChHHHHHHHHH
Q 014137 183 ---SKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFF-APGR--CSKAFGNCTVGNSATEPYIVAHNLI 256 (430)
Q Consensus 183 ---~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~~~~gy~~G~~-~Pg~--~~~~~~~~~~~~~~~~~~~~~hn~l 256 (430)
=.++++.|++=|+.+.+.==|-|. +.+-.||+...| .|.. .... - |. .+-|-+
T Consensus 151 ~~eI~~ii~~f~~AA~rA~~AGfDGVE---------Ih~ahGyLl~qFLSp~~N~RtDe----Y-GG-------slENR~ 209 (362)
T PRK10605 151 LEEIPGIVNDFRQAIANAREAGFDLVE---------LHSAHGYLLHQFLSPSSNQRTDQ----Y-GG-------SVENRA 209 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEE---------EcccccchHHHhcCCcCCCCCCc----C-CC-------cHHHHH
Confidence 045788888866665553224443 456678887654 3431 1110 0 11 233444
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEecCccc---ccCCCCHHH--HHHHHHHHHHhcccccceeeec------ccChhhH
Q 014137 257 LSHAAAVQRYRQKYEQKQKGRIGILLDFVWY---EPLTRSKAD--NYAAQRARDFHVGWFIHPIVYG------EYPKTMQ 325 (430)
Q Consensus 257 lAHa~a~~~~r~~~~~~~~g~IGi~~~~~~~---~P~~~~~~D--~~Aa~~~~~~~~~~fldpi~~G------~YP~~~~ 325 (430)
.=--..++.+|+.... ..||+-++..-. .+.-.+.+| +..++.....-. -+++.- .| .|+..+.
T Consensus 210 Rf~~Eiv~aVr~~vg~---~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~gi-D~i~vs-~~~~~~~~~~~~~~~ 284 (362)
T PRK10605 210 RLVLEVVDAGIAEWGA---DRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGI-AYLHMS-EPDWAGGEPYSDAFR 284 (362)
T ss_pred HHHHHHHHHHHHHcCC---CeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCC-CEEEec-cccccCCccccHHHH
Confidence 4455667777776532 258988875422 122124444 344444332100 122221 22 2233333
Q ss_pred HhhhcC--CC-----CCCHHHHhhh--cCCcceEEee
Q 014137 326 NIVGNR--LP-----KFTKEEVKMV--KGSIDFVGIN 353 (430)
Q Consensus 326 ~~l~~~--lp-----~ft~~d~~~i--kgs~DFiGiN 353 (430)
+.+++. .| .+|+++.+.+ +|.+|++|+-
T Consensus 285 ~~ik~~~~~pv~~~G~~~~~~ae~~i~~G~~D~V~~g 321 (362)
T PRK10605 285 EKVRARFHGVIIGAGAYTAEKAETLIGKGLIDAVAFG 321 (362)
T ss_pred HHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCCEEEEC
Confidence 334432 12 3577777766 4789999874
No 129
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=37.80 E-value=2.1e+02 Score=29.39 Aligned_cols=90 Identities=16% Similarity=0.107 Sum_probs=64.0
Q ss_pred CCCCcccccccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHH
Q 014137 97 GDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEK 176 (430)
Q Consensus 97 ~d~A~d~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~ 176 (430)
+-+|+=||+. +-=+ ...+.|++..|+. + |.+-. --+..+.+++.++++|+..=+..+|-.++.-+.+
T Consensus 82 PlvADIHFd~-~lAl-~a~~~G~~~iRIN---------P-GNig~-~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~ 148 (360)
T PRK00366 82 PLVADIHFDY-RLAL-AAAEAGADALRIN---------P-GNIGK-RDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLE 148 (360)
T ss_pred CEEEecCCCH-HHHH-HHHHhCCCEEEEC---------C-CCCCc-hHHHHHHHHHHHHHCCCCEEEecCCccChHHHHH
Confidence 3445556532 2222 2346799999764 3 55521 0257899999999999999999999999999999
Q ss_pred hcCCCCChHhHHHHHHHHHHHHH
Q 014137 177 KYNGLLSKRVVKDFADYADFCFK 199 (430)
Q Consensus 177 ~~gg~~~~~~~~~f~~ya~~~~~ 199 (430)
+||+-+....++--.++++.+-+
T Consensus 149 ~yg~~t~eamveSAl~~~~~le~ 171 (360)
T PRK00366 149 KYGEPTPEALVESALRHAKILEE 171 (360)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHH
Confidence 98664555677777788777544
No 130
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=37.63 E-value=2.3e+02 Score=28.71 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=37.8
Q ss_pred HHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecC
Q 014137 108 KEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (430)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 166 (430)
.+|++...+.|++.+|+....+.. +-..+.|+.+++.|++..+.+.
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~-------------d~~~~~i~~ak~~G~~v~~~l~ 135 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA-------------DVSEQHIGMARELGMDTVGFLM 135 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH-------------HHHHHHHHHHHHcCCeEEEEEE
Confidence 689999999999999988755443 2357899999999999887773
No 131
>PRK07094 biotin synthase; Provisional
Probab=37.44 E-value=96 Score=30.82 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=40.3
Q ss_pred ccHHHHHHHHhCCCCEEEeccC-C-cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeec
Q 014137 106 RYKEDVDIMANLNFDAYRFSIS-W-SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (430)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~-W-sri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 165 (430)
.-+|+++.|+++|++.+-++++ - +++...-... ...+.+.+.++.+++.||.+..++
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~---~s~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLHPG---MSFENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCC---CCHHHHHHHHHHHHHcCCeecceE
Confidence 4589999999999999999883 3 2444332111 234668899999999999755443
No 132
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=37.10 E-value=4e+02 Score=26.97 Aligned_cols=128 Identities=20% Similarity=0.151 Sum_probs=71.7
Q ss_pred CCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCC---------cHHHHHhcC-----CCCC---hHhHHHHHHHHHHHHH
Q 014137 137 GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDL---------PEALEKKYN-----GLLS---KRVVKDFADYADFCFK 199 (430)
Q Consensus 137 g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~---------P~~l~~~~g-----g~~~---~~~~~~f~~ya~~~~~ 199 (430)
+-.+++.+..++++.+.+.++|-..++=|.|... |........ ..+. .++++.|++=|+.+.+
T Consensus 69 ~~~~~~~i~~~~~l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~ 148 (353)
T cd02930 69 VLNSPRQAAGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALARE 148 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5678888999999999999999999999999533 110000000 0111 3467777776666544
Q ss_pred HhCCcceeEeeccCcchhhccccCCCcC-CCC---CCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 014137 200 TFGDRVKNWMTFNEPRVVAALGYDNGFF-APG---RCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQK 275 (430)
Q Consensus 200 ~fgd~v~~w~t~NEp~~~~~~gy~~G~~-~Pg---~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~~~~ 275 (430)
.==|-|. +.+-.||+...| -|. |.+.. |.| +-|-+.--...++.+|+... .+
T Consensus 149 aGfDgVe---------ih~ahGyLl~qFlsp~~N~RtD~y------GGs-------lenR~r~~~eiv~aIR~~vG--~d 204 (353)
T cd02930 149 AGYDGVE---------IMGSEGYLINQFLAPRTNKRTDEW------GGS-------FENRMRFPVEIVRAVRAAVG--ED 204 (353)
T ss_pred cCCCEEE---------EecccchHHHHhcCCccCCCcCcc------CCC-------HHHHhHHHHHHHHHHHHHcC--CC
Confidence 3224443 235567776654 232 11111 111 22333333456666776542 24
Q ss_pred ceEEEEecCcccc
Q 014137 276 GRIGILLDFVWYE 288 (430)
Q Consensus 276 g~IGi~~~~~~~~ 288 (430)
-.|++-++...+.
T Consensus 205 ~~v~iRi~~~D~~ 217 (353)
T cd02930 205 FIIIYRLSMLDLV 217 (353)
T ss_pred ceEEEEecccccC
Confidence 5688877754433
No 133
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=36.79 E-value=91 Score=29.89 Aligned_cols=72 Identities=15% Similarity=0.053 Sum_probs=42.8
Q ss_pred cCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChHhHHHHHHHHHHHHHHhC
Q 014137 126 ISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFG 202 (430)
Q Consensus 126 i~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~fg 202 (430)
+.|..+.++|.-.... .......+++.++++|++.++.+..++...... -..++...+.|++=.-..+++++
T Consensus 28 ~~f~~i~~~G~l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 28 LAFANPDANGTLNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred EEEEEECCCCeEEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHhC
Confidence 3455555554211111 123567889999999999999997665432111 12466667777666655566654
No 134
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=36.59 E-value=2.4e+02 Score=29.16 Aligned_cols=92 Identities=20% Similarity=0.380 Sum_probs=59.9
Q ss_pred CCcccccccHHHHHHHHhC-CCCEEEecc--CCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeee-eecCCCCCcHHH
Q 014137 99 VSVDQYHRYKEDVDIMANL-NFDAYRFSI--SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEAL 174 (430)
Q Consensus 99 ~A~d~Y~~y~eDi~l~~~l-G~~~~Rfsi--~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~d~P~~l 174 (430)
.+.+-..+ .+|++.++++ ++. .++++ .|+.. ..+.++.+.++++||+.. ++...|..|.+
T Consensus 35 ~~r~~~e~-~~d~~~v~~L~~~~-~~v~lH~~~d~~-------------~d~~~~~~~l~~~GL~v~~i~p~~f~~~~~- 98 (378)
T TIGR02635 35 AARNVFEK-IEDAALVHRLTGIC-PTVALHIPWDRV-------------EDYEELARYAEELGLKIGAINPNLFQDDDY- 98 (378)
T ss_pred CCCCHHHH-HHHHHHHHhhcCCC-CceeeccCCccc-------------cCHHHHHHHHHHcCCceeeeeCCccCCccc-
Confidence 34433443 7788888887 555 66655 44211 236788888999999987 78776766644
Q ss_pred HHhcCCCCCh--HhHHHHHHHHHHH---HHHhCCc-ceeE
Q 014137 175 EKKYNGLLSK--RVVKDFADYADFC---FKTFGDR-VKNW 208 (430)
Q Consensus 175 ~~~~gg~~~~--~~~~~f~~ya~~~---~~~fgd~-v~~w 208 (430)
++|.+.|+ ++.+.-.++.+.| ++.+|.. |..|
T Consensus 99 --~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa~~I~iW 136 (378)
T TIGR02635 99 --KFGSLTHPDKRIRRKAIDHLLECVDIAKKTGSKDISLW 136 (378)
T ss_pred --CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 34778765 5666667777765 4678774 4445
No 135
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=36.29 E-value=1.1e+02 Score=29.14 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChHhHHHHHHHHHHHHHHhC
Q 014137 144 VAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFG 202 (430)
Q Consensus 144 ~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~fg 202 (430)
.+...+.|..|+++|++.++++--++....+ ....+++..+.|++-...++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 4567889999999999999999755443211 012455556666666666666664
No 136
>PTZ00445 p36-lilke protein; Provisional
Probab=36.26 E-value=75 Score=30.29 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=41.5
Q ss_pred HHHHHhCCCCEEEeccCCcccccCCCCCCChh---------hhHHHHHHHHHHHHcCCeeeeecC
Q 014137 111 VDIMANLNFDAYRFSISWSRIFPYGTGKVNWK---------GVAYYNQLINYLLKRGITPYANLY 166 (430)
Q Consensus 111 i~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~---------~~~~y~~~i~~l~~~gi~p~vtL~ 166 (430)
++++++.|++++=+.++=.-|--...|-.++. +-.-...++.+|+++||..+|..+
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 68899999999998887665542221433333 345578899999999999988776
No 137
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=36.26 E-value=2.5e+02 Score=25.48 Aligned_cols=24 Identities=13% Similarity=0.026 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHhCCcceeEe
Q 014137 186 VVKDFADYADFCFKTFGDRVKNWM 209 (430)
Q Consensus 186 ~~~~f~~ya~~~~~~fgd~v~~w~ 209 (430)
..+....|++.+-++.|-++-.+.
T Consensus 101 ~~~~~~~f~~~v~~~~G~~~~iY~ 124 (184)
T cd06525 101 LNDYVLRFIEEFEKLSGLKVGIYT 124 (184)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEe
Confidence 345556666666555555444333
No 138
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=36.03 E-value=3.9e+02 Score=27.05 Aligned_cols=135 Identities=17% Similarity=0.189 Sum_probs=75.1
Q ss_pred CCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHH----------HHHhcCC-----CC---ChHhHHHHHHHHHHHH
Q 014137 137 GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEA----------LEKKYNG-----LL---SKRVVKDFADYADFCF 198 (430)
Q Consensus 137 g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~----------l~~~~gg-----~~---~~~~~~~f~~ya~~~~ 198 (430)
+-.+.+.+..++++.+.++++|-..++=|+|.+.-.. +.....+ .+ =.++++.|++=|+.+.
T Consensus 73 ~~~~d~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~ 152 (337)
T PRK13523 73 GIWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAK 152 (337)
T ss_pred ecCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 4568888999999999999999999999999543110 0000000 11 1257888888776655
Q ss_pred HHhC-CcceeEeeccCcchhhccccCCCcC-CCC--CCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 014137 199 KTFG-DRVKNWMTFNEPRVVAALGYDNGFF-APG--RCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQ 274 (430)
Q Consensus 199 ~~fg-d~v~~w~t~NEp~~~~~~gy~~G~~-~Pg--~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~~~ 274 (430)
+. | |-|. +.+-.||+...| -|. +.+. -- |.| +-|-+.=-...++.+|+..
T Consensus 153 ~a-GfDgVe---------ih~ahGyLl~qFlSp~~N~RtD----~y-GGs-------lenR~Rf~~eii~~ir~~~---- 206 (337)
T PRK13523 153 EA-GFDVIE---------IHGAHGYLINEFLSPLSNKRTD----EY-GGS-------PENRYRFLREIIDAVKEVW---- 206 (337)
T ss_pred Hc-CCCEEE---------EccccchHHHHhcCCccCCcCC----CC-CCC-------HHHHHHHHHHHHHHHHHhc----
Confidence 53 2 3332 345667877654 332 1111 01 112 2333333344555566543
Q ss_pred CceEEEEecCcccccCCCCHHHH
Q 014137 275 KGRIGILLDFVWYEPLTRSKADN 297 (430)
Q Consensus 275 ~g~IGi~~~~~~~~P~~~~~~D~ 297 (430)
...||+-++...+.+--.+++|.
T Consensus 207 ~~~v~vRis~~d~~~~G~~~~e~ 229 (337)
T PRK13523 207 DGPLFVRISASDYHPGGLTVQDY 229 (337)
T ss_pred CCCeEEEecccccCCCCCCHHHH
Confidence 35788888765444433345544
No 139
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=35.75 E-value=1.2e+02 Score=31.96 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCCCEEEecc-CCcc-cccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCc
Q 014137 108 KEDVDIMANLNFDAYRFSI-SWSR-IFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP 171 (430)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi-~Wsr-i~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P 171 (430)
+|.+++|+++|++.+-+++ +-+. +...-....+ ++.+.+.++.++++||.+.+++- +++|
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlP 348 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIKKGLT---VEIARRFTRDCHKLGIKVHGTFI-LGLP 348 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCC---HHHHHHHHHHHHHCCCeEEEEEE-EeCC
Confidence 5678999999999888887 4432 2211101122 45678999999999999887764 2444
No 140
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=35.69 E-value=80 Score=34.70 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=36.0
Q ss_pred HHHHHHhCCCCEEEeccCCc--ccc--------cCCCCC-----------CCh----hhhHHHHHHHHHHHHcCCeeeee
Q 014137 110 DVDIMANLNFDAYRFSISWS--RIF--------PYGTGK-----------VNW----KGVAYYNQLINYLLKRGITPYAN 164 (430)
Q Consensus 110 Di~l~~~lG~~~~Rfsi~Ws--ri~--------P~~~g~-----------~n~----~~~~~y~~~i~~l~~~gi~p~vt 164 (430)
-++-+|+||++++=+.=--. -+. -.|-.. .|+ ..++=+++||++|.++||++|++
T Consensus 169 ~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilD 248 (605)
T TIGR02104 169 GLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMD 248 (605)
T ss_pred HHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEE
Confidence 38999999999998754211 110 001000 011 01456899999999999999997
Q ss_pred c
Q 014137 165 L 165 (430)
Q Consensus 165 L 165 (430)
+
T Consensus 249 v 249 (605)
T TIGR02104 249 V 249 (605)
T ss_pred E
Confidence 4
No 141
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=35.54 E-value=95 Score=30.88 Aligned_cols=73 Identities=19% Similarity=0.160 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChHhHHHHHHHHHHHHHHhCCcceeEeeccCcchhhccccC
Q 014137 144 VAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYD 223 (430)
Q Consensus 144 ~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~~~~gy~ 223 (430)
++-+.+.++.++++||++.+++- +++|. ++.+++.+=++.+.+.=-+.|+.....-+|+.....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlPg------------et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLPG------------EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCCC------------CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 35578899999999999776653 34551 235677777777655444678888888888876555566
Q ss_pred CCcCCC
Q 014137 224 NGFFAP 229 (430)
Q Consensus 224 ~G~~~P 229 (430)
.|.+.|
T Consensus 229 ~g~~~~ 234 (302)
T TIGR01212 229 KGELKT 234 (302)
T ss_pred cCCCCC
Confidence 666544
No 142
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=35.18 E-value=43 Score=35.03 Aligned_cols=59 Identities=25% Similarity=0.251 Sum_probs=39.1
Q ss_pred HHHHHHHhCCCCEEEeccC------CcccccCCCCCC--ChhhhHHHHHHHHHHHHcCCeeeeec--CC
Q 014137 109 EDVDIMANLNFDAYRFSIS------WSRIFPYGTGKV--NWKGVAYYNQLINYLLKRGITPYANL--YH 167 (430)
Q Consensus 109 eDi~l~~~lG~~~~Rfsi~------Wsri~P~~~g~~--n~~~~~~y~~~i~~l~~~gi~p~vtL--~H 167 (430)
+-++.+++||+++.=++=- +.+--...--.+ ....++-.+++++++.++||+.|+++ .|
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH 101 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNH 101 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 5678999999999855421 111111100122 23356778999999999999999987 55
No 143
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=34.79 E-value=1.5e+02 Score=27.45 Aligned_cols=67 Identities=16% Similarity=0.232 Sum_probs=40.7
Q ss_pred CCCcccccccHHHHHHHHhCCCCEEEeccCCcccccCCC-----CCCCh---hhhHH---HHHHHHHHHHcCCeeeeecC
Q 014137 98 DVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGT-----GKVNW---KGVAY---YNQLINYLLKRGITPYANLY 166 (430)
Q Consensus 98 d~A~d~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-----g~~n~---~~~~~---y~~~i~~l~~~gi~p~vtL~ 166 (430)
|.|=.|| |+|.++.++++|++...+|..=....|+-+ |..+. +.|.. ..+.|.+..++| .|++.++
T Consensus 6 d~aF~f~--y~e~~~~l~~~G~~v~~~s~~~~~~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g-~pilgIC 82 (198)
T cd03130 6 DEAFNFY--YPENLELLEAAGAELVPFSPLKDEELPDADGLYLGGGYPELFAEELSANQSMRESIRAFAESG-GPIYAEC 82 (198)
T ss_pred cCccccc--cHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcC-CCEEEEc
Confidence 4455666 999999999999998888752112222211 33333 23322 234455555677 4899998
Q ss_pred C
Q 014137 167 H 167 (430)
Q Consensus 167 H 167 (430)
+
T Consensus 83 g 83 (198)
T cd03130 83 G 83 (198)
T ss_pred c
Confidence 6
No 144
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=34.59 E-value=1.6e+02 Score=30.03 Aligned_cols=96 Identities=16% Similarity=0.219 Sum_probs=56.5
Q ss_pred cHHHHHHHHhCCCCEEEecc-CC-cccccCCCCCCChhhhHHHHHHHHHHHHcCCeee-eecCCCCCcHHHHHhcCCCCC
Q 014137 107 YKEDVDIMANLNFDAYRFSI-SW-SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEALEKKYNGLLS 183 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi-~W-sri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~d~P~~l~~~~gg~~~ 183 (430)
-+|.+++|+++|++.+-+++ += +++...-....+ .+-..+.++.+++.|+..+ +++ =+++|. .+
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~---~~~~~~~i~~l~~~g~~~v~~dl-i~GlPg---------qt 165 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHN---EEDVYEAIANAKKAGFDNISIDL-IYALPG---------QT 165 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCcEEEee-ecCCCC---------CC
Confidence 47889999999999777776 22 233322112222 3567899999999999744 333 345552 23
Q ss_pred hHhHHHHHHHHHHHHHHhCCcceeEeeccCcchhh
Q 014137 184 KRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVA 218 (430)
Q Consensus 184 ~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~~ 218 (430)
.+.|.+=.+.+.+.=-+.|..+...-||....
T Consensus 166 ---~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~ 197 (377)
T PRK08599 166 ---IEDFKESLAKALALDIPHYSAYSLILEPKTVF 197 (377)
T ss_pred ---HHHHHHHHHHHHccCCCEEeeeceeecCCChh
Confidence 44555555554332233455555556776543
No 145
>PLN02960 alpha-amylase
Probab=34.56 E-value=73 Score=36.59 Aligned_cols=94 Identities=5% Similarity=0.100 Sum_probs=58.3
Q ss_pred cccccHHH-HHHHHhCCCCEEEeccC--------Cc-------ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeec-
Q 014137 103 QYHRYKED-VDIMANLNFDAYRFSIS--------WS-------RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL- 165 (430)
Q Consensus 103 ~Y~~y~eD-i~l~~~lG~~~~Rfsi~--------Ws-------ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL- 165 (430)
.|.-..+. ++.+|+||++++-+.=- |- .+.+.- |. .+=++.+|++|.++||.+|+++
T Consensus 414 tf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~y-Gt-----p~dfk~LVd~aH~~GI~VILDvV 487 (897)
T PLN02960 414 SFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRF-GT-----PDDFKRLVDEAHGLGLLVFLDIV 487 (897)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccccc-CC-----HHHHHHHHHHHHHCCCEEEEEec
Confidence 45555544 89999999999887531 10 111110 22 3447999999999999999986
Q ss_pred -CCCCC--c--H---------HHHH--h--cCCC-------CChHhHHHHHHHHHHHHHHhC
Q 014137 166 -YHYDL--P--E---------ALEK--K--YNGL-------LSKRVVKDFADYADFCFKTFG 202 (430)
Q Consensus 166 -~H~d~--P--~---------~l~~--~--~gg~-------~~~~~~~~f~~ya~~~~~~fg 202 (430)
.|+.. + . ++.. . +..| .++++.+.+.+=++..+++|+
T Consensus 488 ~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 488 HSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred ccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 45421 1 1 1100 0 0113 246777888888888888884
No 146
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=34.50 E-value=2e+02 Score=29.79 Aligned_cols=105 Identities=13% Similarity=0.202 Sum_probs=62.9
Q ss_pred cHHHHHHHHhCCCCEEEecc-CCc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCe-eeeecCCCCCcHHHHHhcCCCCC
Q 014137 107 YKEDVDIMANLNFDAYRFSI-SWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGIT-PYANLYHYDLPEALEKKYNGLLS 183 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi-~Ws-ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtL~H~d~P~~l~~~~gg~~~ 183 (430)
-++.++.|+++|+|-+-+++ +-+ ++...- |+.- ..+-..+.++.+++.|+. .-++|- +++|.
T Consensus 114 t~e~l~~l~~~GvnrislGvQS~~d~~L~~l-~R~~--~~~~~~~ai~~l~~~G~~~v~~dlI-~GlPg----------- 178 (400)
T PRK07379 114 DLEQLQGYRSLGVNRVSLGVQAFQDELLALC-GRSH--RVKDIFAAVDLIHQAGIENFSLDLI-SGLPH----------- 178 (400)
T ss_pred CHHHHHHHHHCCCCEEEEEcccCCHHHHHHh-CCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC-----------
Confidence 36889999999999666655 222 122111 2221 123457889999999998 556664 45552
Q ss_pred hHhHHHHHHHHHHHHHHhCCcceeEeeccCcchhhccccCCCcC
Q 014137 184 KRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFF 227 (430)
Q Consensus 184 ~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~~~~gy~~G~~ 227 (430)
++.+.+.+=.+.+.+-=-+.|..+...-||+.....-+..|.+
T Consensus 179 -qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~ 221 (400)
T PRK07379 179 -QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKA 221 (400)
T ss_pred -CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCC
Confidence 2345555545554443346788888888888654444544543
No 147
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=34.11 E-value=1.3e+02 Score=30.56 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=49.4
Q ss_pred HHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChHhH
Q 014137 108 KEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVV 187 (430)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~~ 187 (430)
.+|++...+.|++.+|+...+++. +--.+.|+.+++.|++..+++..- + ....
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~-------------~~~~~~i~~ak~~G~~v~~~l~~a-----------~---~~~~ 143 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA-------------DVSEQHIGLARELGMDTVGFLMMS-----------H---MAPP 143 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH-------------HHHHHHHHHHHHCCCeEEEEEEec-----------c---CCCH
Confidence 689999999999999998765553 125889999999999999888532 1 1124
Q ss_pred HHHHHHHHHHHHHhCC
Q 014137 188 KDFADYADFCFKTFGD 203 (430)
Q Consensus 188 ~~f~~ya~~~~~~fgd 203 (430)
+.+.+.++.+. .+|-
T Consensus 144 e~l~~~a~~~~-~~Ga 158 (337)
T PRK08195 144 EKLAEQAKLME-SYGA 158 (337)
T ss_pred HHHHHHHHHHH-hCCC
Confidence 56666666643 4553
No 148
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=33.67 E-value=1.7e+02 Score=33.31 Aligned_cols=105 Identities=16% Similarity=0.159 Sum_probs=66.6
Q ss_pred HHHHHHHhCCCC--EEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecC---CCCCc-----------H
Q 014137 109 EDVDIMANLNFD--AYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY---HYDLP-----------E 172 (430)
Q Consensus 109 eDi~l~~~lG~~--~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---H~d~P-----------~ 172 (430)
+=++.+.++|+. ..=..|+|-.-..+ =.+|....-...++++.|.++|++-++.+. +-+.. .
T Consensus 315 dvv~~~~~agiPld~~~~DiDyMd~ykD--FTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~v 392 (805)
T KOG1065|consen 315 DVVENYRAAGIPLDVIVIDIDYMDGYKD--FTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKDV 392 (805)
T ss_pred HHHHHHHHcCCCcceeeeehhhhhcccc--eeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhce
Confidence 336777788876 55555555433222 346666666689999999999999999886 22222 0
Q ss_pred HHHH----------hcCC------CCChHhHHHHHHHHHHHHHHhCCcce---eEeeccCcchhhc
Q 014137 173 ALEK----------KYNG------LLSKRVVKDFADYADFCFKTFGDRVK---NWMTFNEPRVVAA 219 (430)
Q Consensus 173 ~l~~----------~~gg------~~~~~~~~~f~~ya~~~~~~fgd~v~---~w~t~NEp~~~~~ 219 (430)
|+.+ -..| ++|+.++++ +...+++|.+.|. +|+-+|||.-++.
T Consensus 393 ~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~W----w~~~~~~fh~~vp~dg~wiDmnE~snf~~ 454 (805)
T KOG1065|consen 393 LIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEW----WLDELKRFHDEVPFDGFWIDMNEPSNFPS 454 (805)
T ss_pred eeecccCchhhhcccCCCcccccccCCchHHHH----HHHHHHhhcccCCccceEEECCCcccCCC
Confidence 1111 1122 566655544 4456668888876 5999999976654
No 149
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=33.56 E-value=92 Score=34.91 Aligned_cols=55 Identities=18% Similarity=0.182 Sum_probs=36.2
Q ss_pred HHHHHhCCCCEEEeccCCccccc-----------CCC-----CCCCh-----hhhHHHHHHHHHHHHcCCeeeeec
Q 014137 111 VDIMANLNFDAYRFSISWSRIFP-----------YGT-----GKVNW-----KGVAYYNQLINYLLKRGITPYANL 165 (430)
Q Consensus 111 i~l~~~lG~~~~Rfsi~Wsri~P-----------~~~-----g~~n~-----~~~~~y~~~i~~l~~~gi~p~vtL 165 (430)
|+-+|+||++++=+.=-=.-... .|- -.++. ..++=+++||++|.++||++|+++
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 78999999999987642211100 010 01111 124568999999999999999974
No 150
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=33.43 E-value=61 Score=39.88 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=44.2
Q ss_pred ccccHHHHHHHHhCCCCEEEeccCCcccc--cCCC-----CCCChh--hhHHHHHHHHHHHHcCCeeeeec--CCC
Q 014137 104 YHRYKEDVDIMANLNFDAYRFSISWSRIF--PYGT-----GKVNWK--GVAYYNQLINYLLKRGITPYANL--YHY 168 (430)
Q Consensus 104 Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~--P~~~-----g~~n~~--~~~~y~~~i~~l~~~gi~p~vtL--~H~ 168 (430)
+....+-+..+++||++++=+|=-+.-.- ..|. ..+|++ +.+=+++++++++++||..|+++ .|.
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~ 832 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHM 832 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 44467778999999999998776554210 0010 122222 45568999999999999999985 454
No 151
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=33.19 E-value=1.2e+02 Score=31.11 Aligned_cols=94 Identities=21% Similarity=0.377 Sum_probs=55.7
Q ss_pred hCCCCEEEeccCCcccccCCCCCCChhhhHHHHHH--HHHHHHcCCeeeeecCCCCCcHHHHHhc---CCCCChHhHHHH
Q 014137 116 NLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQL--INYLLKRGITPYANLYHYDLPEALEKKY---NGLLSKRVVKDF 190 (430)
Q Consensus 116 ~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~--i~~l~~~gi~p~vtL~H~d~P~~l~~~~---gg~~~~~~~~~f 190 (430)
++|+...|+.|.=.+.--. |..|. +|+++ -...+..|+..|.+- |..|.|+.... ||=..+--.+.|
T Consensus 77 ~lg~si~Rv~I~~ndfsl~--g~~d~----w~kels~Ak~~in~g~ivfASP--WspPa~Mktt~~~ngg~~g~Lk~e~Y 148 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLG--GSADN----WYKELSTAKSAINPGMIVFASP--WSPPASMKTTNNRNGGNAGRLKYEKY 148 (433)
T ss_pred ccCceEEEEEecccccccC--CCcch----hhhhcccchhhcCCCcEEEecC--CCCchhhhhccCcCCccccccchhHh
Confidence 4788888888765554322 45553 34433 233567788877765 88999987642 331112224566
Q ss_pred HHHHHHH---HHHh---CCcceeEeeccCcchh
Q 014137 191 ADYADFC---FKTF---GDRVKNWMTFNEPRVV 217 (430)
Q Consensus 191 ~~ya~~~---~~~f---gd~v~~w~t~NEp~~~ 217 (430)
++||+.+ +..+ |=.+.+-.+=|||...
T Consensus 149 a~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~ 181 (433)
T COG5520 149 ADYADYLNDFVLEMKNNGVNLYALSVQNEPDYA 181 (433)
T ss_pred HHHHHHHHHHHHHHHhCCCceeEEeeccCCccc
Confidence 6666654 3334 3345666788999754
No 152
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=32.84 E-value=2e+02 Score=28.94 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCeeeeecCCC-----CCcHHHHHh-------------c-----------CCCCChHhHHHHHHHHHHHH
Q 014137 148 NQLINYLLKRGITPYANLYHY-----DLPEALEKK-------------Y-----------NGLLSKRVVKDFADYADFCF 198 (430)
Q Consensus 148 ~~~i~~l~~~gi~p~vtL~H~-----d~P~~l~~~-------------~-----------gg~~~~~~~~~f~~ya~~~~ 198 (430)
+++|++|+++|++.++.+.-+ +.|..-+.. | -.|+||+.++.|.+.-+.++
T Consensus 67 ~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06604 67 KELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh
Confidence 789999999999987654322 122222110 0 13678888888877666544
Q ss_pred HHhCCcce-eEeeccCcchh
Q 014137 199 KTFGDRVK-NWMTFNEPRVV 217 (430)
Q Consensus 199 ~~fgd~v~-~w~t~NEp~~~ 217 (430)
.. .|+ +|+=+|||..+
T Consensus 147 -~~--Gvdg~w~D~~Ep~~~ 163 (339)
T cd06604 147 -DL--GVDGIWNDMNEPAVF 163 (339)
T ss_pred -hC--CCceEeecCCCcccc
Confidence 23 344 58899999865
No 153
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=32.68 E-value=2.4e+02 Score=24.88 Aligned_cols=57 Identities=12% Similarity=0.036 Sum_probs=38.8
Q ss_pred ccHHHHHHHHhCCCCEEEeccC-CcccccC-CCCCCChhhhHHHHHHHHHHHHcC-Ceeeeec
Q 014137 106 RYKEDVDIMANLNFDAYRFSIS-WSRIFPY-GTGKVNWKGVAYYNQLINYLLKRG-ITPYANL 165 (430)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~-Wsri~P~-~~g~~n~~~~~~y~~~i~~l~~~g-i~p~vtL 165 (430)
.-++.++.|++.|++.+.+|+. ++.-.-+ -.... ..+.+.+.|+.+++.| +.+.+.+
T Consensus 98 ~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 98 LTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGH---TVEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred CCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCC---CHHHHHHHHHHHHHhCCcceEEeE
Confidence 3478899999999999999995 5432111 11112 2477899999999999 5544433
No 154
>PRK10150 beta-D-glucuronidase; Provisional
Probab=32.63 E-value=46 Score=36.44 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCCCcEEEecCCC
Q 014137 406 MYKALMYIKGHYGNPTVILSENGT 429 (430)
Q Consensus 406 Lr~~L~~i~~rY~~ppI~ITENG~ 429 (430)
+...+....+.|+. |++|||.|.
T Consensus 489 ~~~~~~~~~~~~~k-P~~isEyg~ 511 (604)
T PRK10150 489 LEKELLAWQEKLHK-PIIITEYGA 511 (604)
T ss_pred HHHHHHHHHHhcCC-CEEEEccCC
Confidence 33455555666654 599999984
No 155
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=32.24 E-value=1.4e+02 Score=29.36 Aligned_cols=59 Identities=19% Similarity=0.313 Sum_probs=48.3
Q ss_pred cHHHHHHHHhCCCCEEEeccCCcccccCCC-CCCChhhhHHHHHHHHHHHHcCCeeeeec
Q 014137 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANL 165 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 165 (430)
-++|++...+.|++.+-+.++=|...-... +.=-++.++.+.++++..+++|+++-+++
T Consensus 76 ~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 76 NKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 489999999999999998887666544321 44456789999999999999999988888
No 156
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=32.13 E-value=1.5e+02 Score=29.10 Aligned_cols=69 Identities=13% Similarity=0.047 Sum_probs=49.4
Q ss_pred CcccccccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCc
Q 014137 100 SVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP 171 (430)
Q Consensus 100 A~d~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P 171 (430)
+.+......+=.+.+|++|+..+|-+..=+|=-|.+.-.+ +.+.++.+-+.+++.||..+.+.++-...
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~---g~~gl~~l~~~~~~~Gl~~~te~~d~~~~ 104 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGL---GEEGLKILKEVGDKYNLPVVTEVMDTRDV 104 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCc---HHHHHHHHHHHHHHcCCCEEEeeCChhhH
Confidence 4455666777889999999999999975566666542112 24556777777899999999988764333
No 157
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=31.71 E-value=1e+02 Score=29.05 Aligned_cols=79 Identities=14% Similarity=0.100 Sum_probs=54.6
Q ss_pred HHHHHH----HHhCCCCEEEeccCCcccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCC
Q 014137 108 KEDVDI----MANLNFDAYRFSISWSRIFPYG-TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLL 182 (430)
Q Consensus 108 ~eDi~l----~~~lG~~~~Rfsi~Wsri~P~~-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~ 182 (430)
++|++. +++.|++.+|+.++=|...... .+.--++.++...+.++.+++.|++..+++-+.. ..
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~-----------~~ 134 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS-----------RT 134 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG-----------GS
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc-----------cc
Confidence 455555 4569999999998766644332 1444456788899999999999999987775431 12
Q ss_pred ChHhHHHHHHHHHHHHHH
Q 014137 183 SKRVVKDFADYADFCFKT 200 (430)
Q Consensus 183 ~~~~~~~f~~ya~~~~~~ 200 (430)
..+.+.++++.+.+.
T Consensus 135 ---~~~~~~~~~~~~~~~ 149 (237)
T PF00682_consen 135 ---DPEELLELAEALAEA 149 (237)
T ss_dssp ---SHHHHHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHHc
Confidence 246667777776555
No 158
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=31.33 E-value=1.6e+02 Score=29.23 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=43.4
Q ss_pred cHHHHHHHHhCCCCEEEecc----CCcccccCC---CCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHH
Q 014137 107 YKEDVDIMANLNFDAYRFSI----SWSRIFPYG---TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEAL 174 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi----~Wsri~P~~---~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l 174 (430)
.++=|++|+.+|+|.+-+=+ .++. .|.- .|.+.++. ++++++.++++||++|.-+ |+|-.+
T Consensus 19 lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~~e---i~ei~~yA~~~gI~vIPei---d~pGH~ 86 (301)
T cd06565 19 LKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTKEE---IREIDDYAAELGIEVIPLI---QTLGHL 86 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCHHH---HHHHHHHHHHcCCEEEecC---CCHHHH
Confidence 67889999999999887643 2221 1221 26666654 6999999999999999866 556543
No 159
>PLN02389 biotin synthase
Probab=30.52 E-value=1.4e+02 Score=30.98 Aligned_cols=57 Identities=16% Similarity=0.189 Sum_probs=42.4
Q ss_pred ccHHHHHHHHhCCCCEEEeccCCcc-cccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeec
Q 014137 106 RYKEDVDIMANLNFDAYRFSISWSR-IFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (430)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~Wsr-i~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 165 (430)
.-+|.++.||+.|++.|-.+++=++ ++|+-... ..++..-+.++.+++.||+...++
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~---~s~e~rl~ti~~a~~~Gi~v~sg~ 233 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITT---RSYDDRLETLEAVREAGISVCSGG 233 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCC---CCHHHHHHHHHHHHHcCCeEeEEE
Confidence 5689999999999999999885233 44442111 135667899999999999876664
No 160
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=28.83 E-value=88 Score=26.51 Aligned_cols=52 Identities=21% Similarity=0.170 Sum_probs=37.6
Q ss_pred HHHHHHHHhCCCCEEEecc-CCccc-ccCCCCCCChhhhHHHHHHHHHHHHcCCee
Q 014137 108 KEDVDIMANLNFDAYRFSI-SWSRI-FPYGTGKVNWKGVAYYNQLINYLLKRGITP 161 (430)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi-~Wsri-~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p 161 (430)
++.++.|++.|++.+++|+ +-+.- ..+..+ .....+...+.++.|+++|+.+
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRIIN--RGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS--STSHHHHHHHHHHHHHHTTSET
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhhc--CCCCHHHHHHHHHHHHHcCCCc
Confidence 8999999999999999998 33332 111101 1224567789999999999996
No 161
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=28.69 E-value=1.9e+02 Score=31.06 Aligned_cols=96 Identities=18% Similarity=0.141 Sum_probs=53.9
Q ss_pred HHHHHHHHhCCCCEEEeccCCccccc----------CCC---CCC----C-hhhhHHHHHHHHHHHHcCCeeeeecCCCC
Q 014137 108 KEDVDIMANLNFDAYRFSISWSRIFP----------YGT---GKV----N-WKGVAYYNQLINYLLKRGITPYANLYHYD 169 (430)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P----------~~~---g~~----n-~~~~~~y~~~i~~l~~~gi~p~vtL~H~d 169 (430)
+.||+...+.|++.+|+....+.+.- .+. +.+ + ...+++|.++.++|.+.|+.-+ ++-
T Consensus 100 ~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I-~Ik--- 175 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSI-CIK--- 175 (499)
T ss_pred HHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEE-EeC---
Confidence 45789999999999999976665510 000 000 0 0124455555555555554422 221
Q ss_pred CcHHHHHhcCCCCChHhHHHHHHHHHHHHHHhC-CcceeEeeccCcchh
Q 014137 170 LPEALEKKYNGLLSKRVVKDFADYADFCFKTFG-DRVKNWMTFNEPRVV 217 (430)
Q Consensus 170 ~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~fg-d~v~~w~t~NEp~~~ 217 (430)
|- -|...|. ...+..+.+-++++ +..-...+.|-..+.
T Consensus 176 ------Dt-aGll~P~---~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA 214 (499)
T PRK12330 176 ------DM-AALLKPQ---PAYDIVKGIKEACGEDTRINLHCHSTTGVT 214 (499)
T ss_pred ------CC-ccCCCHH---HHHHHHHHHHHhCCCCCeEEEEeCCCCCcH
Confidence 11 4666654 45566666677886 433457788887653
No 162
>PRK12677 xylose isomerase; Provisional
Probab=28.27 E-value=4.4e+02 Score=27.25 Aligned_cols=90 Identities=16% Similarity=0.111 Sum_probs=53.5
Q ss_pred cHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeee-eecCCCCCcHHHHHhcCCCCCh-
Q 014137 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEALEKKYNGLLSK- 184 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~d~P~~l~~~~gg~~~~- 184 (430)
..|-++.++++|++++=|.. ..+.|-+ ....+--+..+++-+.|.++||+.. ++...|..|.+ +.|++.++
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~--~~l~p~~--~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts~d 105 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHD--DDLVPFG--ATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTSND 105 (384)
T ss_pred HHHHHHHHHHhCCCEEEecc--cccCCCC--CChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCCCC
Confidence 57889999999999986632 2344432 1111111346788888999999966 56555555543 23788774
Q ss_pred -HhHHHHHHHHHHH---HHHhCC
Q 014137 185 -RVVKDFADYADFC---FKTFGD 203 (430)
Q Consensus 185 -~~~~~f~~ya~~~---~~~fgd 203 (430)
+..+.-.++.+.+ +..+|-
T Consensus 106 ~~~R~~Ai~~~~r~IdlA~eLGa 128 (384)
T PRK12677 106 RDVRRYALRKVLRNIDLAAELGA 128 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 2223324444433 555654
No 163
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=28.12 E-value=2.4e+02 Score=30.57 Aligned_cols=107 Identities=16% Similarity=0.175 Sum_probs=67.6
Q ss_pred HHHHHHHHhCCCCEEEecc-C-CcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChH
Q 014137 108 KEDVDIMANLNFDAYRFSI-S-WSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKR 185 (430)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi-~-Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~ 185 (430)
++.+++|+++|++.+-+++ + -.++.-.- ++- -..+-..+.++.+++.|++..+.|- +++|. +
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~i-nRg--ht~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg------------q 269 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERT-KRG--HTVRDVVEATRLLRDAGLKVVYHIM-PGLPG------------S 269 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHh-CCC--CCHHHHHHHHHHHHHcCCeEEEEee-cCCCC------------C
Confidence 7889999999999777776 2 22222111 111 1234567788899999998666663 45552 2
Q ss_pred hHHHHHHHHHHHHH--HhC-CcceeEeeccCcchhhccccCCCcCCCC
Q 014137 186 VVKDFADYADFCFK--TFG-DRVKNWMTFNEPRVVAALGYDNGFFAPG 230 (430)
Q Consensus 186 ~~~~f~~ya~~~~~--~fg-d~v~~w~t~NEp~~~~~~gy~~G~~~Pg 230 (430)
+.+.+.+=++.+++ .++ |.|+.+.+.=+|+.....-|..|.|.|.
T Consensus 270 t~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~ 317 (522)
T TIGR01211 270 SFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPY 317 (522)
T ss_pred CHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCC
Confidence 34556666666665 343 6788888777777655555666777664
No 164
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=28.01 E-value=1.8e+02 Score=30.54 Aligned_cols=93 Identities=17% Similarity=0.269 Sum_probs=52.6
Q ss_pred cHHHHHHHHhCCCCEEEecc-CCc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCe-eeeecCCCCCcHHHHHhcCCCCC
Q 014137 107 YKEDVDIMANLNFDAYRFSI-SWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGIT-PYANLYHYDLPEALEKKYNGLLS 183 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi-~Ws-ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtL~H~d~P~~l~~~~gg~~~ 183 (430)
-+|.+++|+++|++.+.+++ +=+ ++.-.- |.. ...+-..+.++.+++.|+. +-++| -+++|.
T Consensus 150 t~e~l~~l~~aG~~risiGvqS~~~~~L~~l-~r~--~~~~~~~~ai~~l~~~G~~~v~~dl-i~GlPg----------- 214 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLGVQDFDPEVQKAV-NRI--QPFEFTFALVEAARELGFTSINIDL-IYGLPK----------- 214 (453)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHHh-CCC--CCHHHHHHHHHHHHHcCCCcEEEEE-EccCCC-----------
Confidence 47889999999999777776 322 111111 222 1235577899999999994 44555 345552
Q ss_pred hHhHHHHHHHHHHHHHHhCCcceeEeeccCcc
Q 014137 184 KRVVKDFADYADFCFKTFGDRVKNWMTFNEPR 215 (430)
Q Consensus 184 ~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~ 215 (430)
++.+.|.+-.+.+.+.=-+.+..+...+.|.
T Consensus 215 -qt~e~~~~~l~~~~~l~~~~i~~y~l~~~p~ 245 (453)
T PRK09249 215 -QTPESFARTLEKVLELRPDRLAVFNYAHVPW 245 (453)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEEccCccchh
Confidence 2345555555555442223444443333443
No 165
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=27.93 E-value=2.6e+02 Score=28.49 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=59.7
Q ss_pred cHHHHHHHHhCCCCEEEecc-CCc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCe-eeeecCCCCCcHHHHHhcCCCCC
Q 014137 107 YKEDVDIMANLNFDAYRFSI-SWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGIT-PYANLYHYDLPEALEKKYNGLLS 183 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi-~Ws-ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtL~H~d~P~~l~~~~gg~~~ 183 (430)
-+|.+++|+++|++.+-+++ +-+ ++...- |+.. ..+-..+.++.+++.|+. ..++|- +++|.
T Consensus 107 ~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l-~R~~--s~~~~~~a~~~l~~~g~~~v~~dli-~GlPg----------- 171 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSLGMQSAAPHVLAVL-DRTH--TPGRAVAAAREARAAGFEHVNLDLI-YGTPG----------- 171 (375)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCC--CHHHHHHHHHHHHHcCCCcEEEEEe-ccCCC-----------
Confidence 46889999999999666665 332 222111 2221 235577899999999998 555553 34452
Q ss_pred hHhHHHHHHHHHHHHHHhCCcceeEeeccCcchhhccccCCCc
Q 014137 184 KRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGF 226 (430)
Q Consensus 184 ~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~~~~gy~~G~ 226 (430)
++.+.|.+=.+.+.+.=-+.+..+...=||+.....-+..|.
T Consensus 172 -qt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~~~~~~g~ 213 (375)
T PRK05628 172 -ESDDDWRASLDAALEAGVDHVSAYALIVEDGTALARRVRRGE 213 (375)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEeeeeecCCCChHHHHhhcCC
Confidence 234556555555443223566666655577654433333333
No 166
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=27.81 E-value=1.6e+02 Score=29.20 Aligned_cols=62 Identities=23% Similarity=0.544 Sum_probs=44.3
Q ss_pred cHHHHHHHHhCCCCEEEeccC----Ccc---cccCC------------CCCCChhhhHHHHHHHHHHHHcCCeeeeecCC
Q 014137 107 YKEDVDIMANLNFDAYRFSIS----WSR---IFPYG------------TGKVNWKGVAYYNQLINYLLKRGITPYANLYH 167 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~----Wsr---i~P~~------------~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H 167 (430)
.++-|+.|+..++|.+.+-++ |.- ..|+- .|.+.++. .+++++.++++||+.|.-+
T Consensus 18 lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~d---i~elv~yA~~rgI~viPEi-- 92 (303)
T cd02742 18 IKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQ---LKDIIEYAAARGIEVIPEI-- 92 (303)
T ss_pred HHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHH---HHHHHHHHHHcCCEEEEec--
Confidence 577799999999998877765 521 12221 14455544 6999999999999999776
Q ss_pred CCCcHHH
Q 014137 168 YDLPEAL 174 (430)
Q Consensus 168 ~d~P~~l 174 (430)
|+|...
T Consensus 93 -D~PGH~ 98 (303)
T cd02742 93 -DMPGHS 98 (303)
T ss_pred -cchHHH
Confidence 677643
No 167
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=27.51 E-value=2.4e+02 Score=28.53 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=50.1
Q ss_pred HHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcH
Q 014137 110 DVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPE 172 (430)
Q Consensus 110 Di~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~ 172 (430)
+++.+|++|-++..|=+-|. |+.+-.+|..-.++.+++.++|++.+|--++=+..+|.+.
T Consensus 111 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~ 170 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNI 170 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCC
Confidence 36899999999999988775 3433468888899999999999999999999888776553
No 168
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=27.17 E-value=1.9e+02 Score=29.68 Aligned_cols=88 Identities=15% Similarity=0.217 Sum_probs=60.9
Q ss_pred CCCCcccccccHHHHHHHHhCCCCEEEeccCCcccccCCCCCC------Chhh-hHHHHHHHHHHHHcCCeeeeecCCCC
Q 014137 97 GDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKV------NWKG-VAYYNQLINYLLKRGITPYANLYHYD 169 (430)
Q Consensus 97 ~d~A~d~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~------n~~~-~~~y~~~i~~l~~~gi~p~vtL~H~d 169 (430)
+=+|.=||+ |+-=+.-++. ++.+|+. + |.+ .... -+..+.+++.++++|+..=+..+|-.
T Consensus 76 PlVADIHFd-~~lAl~a~~~--v~kiRIN---------P-GNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GS 142 (359)
T PF04551_consen 76 PLVADIHFD-YRLALEAIEA--VDKIRIN---------P-GNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGS 142 (359)
T ss_dssp -EEEEESTT-CHHHHHHHHC---SEEEE----------T-TTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGG
T ss_pred CeeeecCCC-HHHHHHHHHH--hCeEEEC---------C-CcccccccccccchHHHHHHHHHHHHHCCCCEEEeccccc
Confidence 445666776 6666666665 9999975 3 656 0012 36789999999999999999999999
Q ss_pred CcHHHHHhcCCCCChHhHHHHHHHHHHHH
Q 014137 170 LPEALEKKYNGLLSKRVVKDFADYADFCF 198 (430)
Q Consensus 170 ~P~~l~~~~gg~~~~~~~~~f~~ya~~~~ 198 (430)
++.-+.++| |-+....++.-.++++.|-
T Consensus 143 L~~~~~~ky-~~t~~amvesA~~~~~~le 170 (359)
T PF04551_consen 143 LEKDILEKY-GPTPEAMVESALEHVRILE 170 (359)
T ss_dssp S-HHHHHHH-CHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHhhc-cchHHHHHHHHHHHHHHHH
Confidence 999999988 4444556777777777643
No 169
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=27.11 E-value=1.1e+02 Score=32.36 Aligned_cols=77 Identities=18% Similarity=0.314 Sum_probs=46.5
Q ss_pred cHHHHHHHHhCCCCEEEecc-CCc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCe-eeeecCCCCCcHHHHHhcCCCCC
Q 014137 107 YKEDVDIMANLNFDAYRFSI-SWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGIT-PYANLYHYDLPEALEKKYNGLLS 183 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi-~Ws-ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtL~H~d~P~~l~~~~gg~~~ 183 (430)
-++.+++|+++|++.+-+++ +=+ ++...- +... ..+...+.++.|++.|++ +-++| -+++|.
T Consensus 150 ~~e~l~~lk~~G~~risiGvqS~~~~~l~~l-~r~~--~~~~~~~ai~~l~~~G~~~v~~dl-i~GlPg----------- 214 (455)
T TIGR00538 150 TKDVIDALRDEGFNRLSFGVQDFNKEVQQAV-NRIQ--PEEMIFELMNHAREAGFTSINIDL-IYGLPK----------- 214 (455)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHh-CCCC--CHHHHHHHHHHHHhcCCCcEEEeE-EeeCCC-----------
Confidence 37889999999999666665 222 122111 2211 235678999999999997 33444 244552
Q ss_pred hHhHHHHHHHHHHHHH
Q 014137 184 KRVVKDFADYADFCFK 199 (430)
Q Consensus 184 ~~~~~~f~~ya~~~~~ 199 (430)
++.+.|.+-.+.+.+
T Consensus 215 -qt~e~~~~tl~~~~~ 229 (455)
T TIGR00538 215 -QTKESFAKTLEKVAE 229 (455)
T ss_pred -CCHHHHHHHHHHHHh
Confidence 235566666665544
No 170
>PLN03153 hypothetical protein; Provisional
Probab=26.68 E-value=51 Score=35.43 Aligned_cols=67 Identities=24% Similarity=0.311 Sum_probs=40.1
Q ss_pred HHHcC-CeeeeecCCCCCcHHHHHhcCCCCChHhHHHHHHHH----HHHHHHh--CCcceeEeeccCcchhhccccCCCc
Q 014137 154 LLKRG-ITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYA----DFCFKTF--GDRVKNWMTFNEPRVVAALGYDNGF 226 (430)
Q Consensus 154 l~~~g-i~p~vtL~H~d~P~~l~~~~gg~~~~~~~~~f~~ya----~~~~~~f--gd~v~~w~t~NEp~~~~~~gy~~G~ 226 (430)
+.+.| ++|+|+||||+.= +--|.+-...+.++.+..=| ..++++. +|+..-|..- ..+||..-.
T Consensus 327 ~les~p~~P~vSlHH~~~~---~p~fP~~~~~~~~~~l~~a~~~d~~~~lq~siCyd~~~~w~fs------vSwGysV~~ 397 (537)
T PLN03153 327 LLSSHPIAPFVSIHHVEAV---DPFYPGLSSLDSLKLFTRAMKVDPRSFLQRSICYDHTHHLTFS------ISLGYVVQV 397 (537)
T ss_pred HhhcCCCCCceeeeecccc---ccccCCcchHHHHHHHHHHhhcCchhHHHHHHhhhcccceeEE------EeccEEEEE
Confidence 44555 8999999999871 11123334446677776544 2234554 6666667654 567887655
Q ss_pred CCC
Q 014137 227 FAP 229 (430)
Q Consensus 227 ~~P 229 (430)
|+-
T Consensus 398 y~~ 400 (537)
T PLN03153 398 FPS 400 (537)
T ss_pred ecC
Confidence 543
No 171
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=26.58 E-value=4.4e+02 Score=28.12 Aligned_cols=94 Identities=19% Similarity=0.390 Sum_probs=57.4
Q ss_pred cHHH-HHHHHhCCCCEEEec-------cCCcc-cccCCC-----------CCCChhhhHHHHHHHHHHHHcCCeeeeecC
Q 014137 107 YKED-VDIMANLNFDAYRFS-------ISWSR-IFPYGT-----------GKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (430)
Q Consensus 107 y~eD-i~l~~~lG~~~~Rfs-------i~Wsr-i~P~~~-----------g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 166 (430)
++.| ++++|+|.+...|+. ..|.. |-|... -+-|+=| -+++++.+++.|.+|++.+.
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~G---t~EF~~~~e~iGaep~~avN 126 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFG---THEFMDWCELIGAEPYIAVN 126 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhccccccccccccc---HHHHHHHHHHhCCceEEEEe
Confidence 3555 699999999999853 23332 111110 0112223 37899999999999999985
Q ss_pred CCCCcHHHHHhcCCCCChHhHHHHHHHHHH--------HHHHhCC----cceeEeeccCcc
Q 014137 167 HYDLPEALEKKYNGLLSKRVVKDFADYADF--------CFKTFGD----RVKNWMTFNEPR 215 (430)
Q Consensus 167 H~d~P~~l~~~~gg~~~~~~~~~f~~ya~~--------~~~~fgd----~v~~w~t~NEp~ 215 (430)
= |. ...+....|.+||.. .-+..|- .||||.+=||..
T Consensus 127 ~-----------Gs-rgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~ 175 (501)
T COG3534 127 L-----------GS-RGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMD 175 (501)
T ss_pred c-----------CC-ccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccC
Confidence 1 21 333455666666532 2333343 499999999964
No 172
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=26.35 E-value=1.4e+02 Score=29.04 Aligned_cols=43 Identities=14% Similarity=0.257 Sum_probs=32.2
Q ss_pred cccccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHH
Q 014137 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYL 154 (430)
Q Consensus 103 ~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l 154 (430)
-....++||+.++++|++.+=|++- +.+|.+|.+.+ +++++..
T Consensus 71 E~~~M~~di~~~~~~GadGvV~G~L------~~dg~vD~~~~---~~Li~~a 113 (248)
T PRK11572 71 EFAAMLEDIATVRELGFPGLVTGVL------DVDGHVDMPRM---RKIMAAA 113 (248)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeE------CCCCCcCHHHH---HHHHHHh
Confidence 3456889999999999999999863 22378997654 5666655
No 173
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=26.28 E-value=1.4e+02 Score=30.06 Aligned_cols=71 Identities=23% Similarity=0.471 Sum_probs=47.0
Q ss_pred CCCcccc--cccHHHHHHHHhCCCCEEEecc-----------CCcccccCC---------CCCCChhhhHHHHHHHHHHH
Q 014137 98 DVSVDQY--HRYKEDVDIMANLNFDAYRFSI-----------SWSRIFPYG---------TGKVNWKGVAYYNQLINYLL 155 (430)
Q Consensus 98 d~A~d~Y--~~y~eDi~l~~~lG~~~~Rfsi-----------~Wsri~P~~---------~g~~n~~~~~~y~~~i~~l~ 155 (430)
|+|-.++ ...++-|+.|+..++|.+-+-+ .++++-..+ .|.+-. +=++++++.++
T Consensus 9 D~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~---~di~elv~yA~ 85 (329)
T cd06568 9 DVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQ---EDYKDIVAYAA 85 (329)
T ss_pred eccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCH---HHHHHHHHHHH
Confidence 4444444 2367778999999999776655 334442221 023443 34699999999
Q ss_pred HcCCeeeeecCCCCCcHHH
Q 014137 156 KRGITPYANLYHYDLPEAL 174 (430)
Q Consensus 156 ~~gi~p~vtL~H~d~P~~l 174 (430)
++||++|.-+ |+|-..
T Consensus 86 ~rgI~vIPEi---D~PGH~ 101 (329)
T cd06568 86 ERHITVVPEI---DMPGHT 101 (329)
T ss_pred HcCCEEEEec---CCcHHH
Confidence 9999999776 777654
No 174
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.23 E-value=2.2e+02 Score=28.04 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCCeeeeecCCCC-C-c---HH--HHHhc-----------CCCCChHhHHHHHHHHHHHHHHhCCcceeE
Q 014137 147 YNQLINYLLKRGITPYANLYHYD-L-P---EA--LEKKY-----------NGLLSKRVVKDFADYADFCFKTFGDRVKNW 208 (430)
Q Consensus 147 y~~~i~~l~~~gi~p~vtL~H~d-~-P---~~--l~~~~-----------gg~~~~~~~~~f~~ya~~~~~~fgd~v~~w 208 (430)
.+++|++|+++|++.++.++-.. . + .. +.+.. ..++||+..+.|.+-....+...| -.-.|
T Consensus 76 p~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~G-idg~W 154 (292)
T cd06595 76 PEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQG-VDFWW 154 (292)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcC-CcEEE
Confidence 47889999999998887664321 1 1 11 11111 135677666655433333333333 13468
Q ss_pred eeccCcchh
Q 014137 209 MTFNEPRVV 217 (430)
Q Consensus 209 ~t~NEp~~~ 217 (430)
.=+|||..+
T Consensus 155 ~D~~E~~~~ 163 (292)
T cd06595 155 LDWQQGNRT 163 (292)
T ss_pred ecCCCCccc
Confidence 889999754
No 175
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=26.09 E-value=2.5e+02 Score=34.15 Aligned_cols=70 Identities=13% Similarity=0.287 Sum_probs=50.1
Q ss_pred ccccccHHHHHHHHhCCCCEEEeccCCcccccCCC-C---------CCCh------hhhHHHHHHHHHHHHc-CCeeeee
Q 014137 102 DQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGT-G---------KVNW------KGVAYYNQLINYLLKR-GITPYAN 164 (430)
Q Consensus 102 d~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g---------~~n~------~~~~~y~~~i~~l~~~-gi~p~vt 164 (430)
..+..|++.++.++++|+|++=|. -|+|.|. + .+|+ .+.+-..++|+++.++ ||..|++
T Consensus 129 G~~~~w~~~L~~ik~lGyN~Ihft----PI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilD 204 (1464)
T TIGR01531 129 GPLSEWEPRLRVAKEKGYNMIHFT----PLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITD 204 (1464)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeC----CCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 456779999999999999998775 3554441 1 2333 2445578999999996 9999987
Q ss_pred --cCC--CCCcHHHHH
Q 014137 165 --LYH--YDLPEALEK 176 (430)
Q Consensus 165 --L~H--~d~P~~l~~ 176 (430)
+.| +|.| ||.+
T Consensus 205 vV~NHTa~ds~-Wl~e 219 (1464)
T TIGR01531 205 IVFNHTANNSP-WLLE 219 (1464)
T ss_pred eeecccccCCH-HHHh
Confidence 455 5555 6663
No 176
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=26.03 E-value=1.8e+02 Score=27.34 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=28.3
Q ss_pred ccccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHH
Q 014137 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLL 155 (430)
Q Consensus 104 Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~ 155 (430)
....++||+.++++|.+.+=|+. .-. +|.+|.+. .+++++...
T Consensus 71 ~~~M~~dI~~~~~~GadG~VfG~-----L~~-dg~iD~~~---~~~Li~~a~ 113 (201)
T PF03932_consen 71 IEIMKEDIRMLRELGADGFVFGA-----LTE-DGEIDEEA---LEELIEAAG 113 (201)
T ss_dssp HHHHHHHHHHHHHTT-SEEEE-------BET-TSSB-HHH---HHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCeeEEEe-----ECC-CCCcCHHH---HHHHHHhcC
Confidence 45578999999999999999984 322 37898754 466666554
No 177
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=25.64 E-value=29 Score=33.78 Aligned_cols=72 Identities=13% Similarity=0.193 Sum_probs=41.5
Q ss_pred HHHHcCCeeeeecCCCCCcHHHHHhcCCCCChHhHHHHHHHHHHHHHHhCCcceeEeeccCcchhhccccCCCcC
Q 014137 153 YLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFF 227 (430)
Q Consensus 153 ~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~~~~gy~~G~~ 227 (430)
-+.++.+.|+++|||||.= ..-+.+....+.++.+.+=|+.--.++-.+-.-|---....+.+.+||..-.+
T Consensus 76 ~~~a~~~~pl~SlHH~~~~---~PifP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy 147 (255)
T PF04646_consen 76 FLEAHPLAPLVSLHHWDSV---DPIFPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVY 147 (255)
T ss_pred eeecCCCCceeeeeehhhc---cccCCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEE
Confidence 3455578999999999862 22245555567777777755443333322211222223334456789977666
No 178
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=25.62 E-value=36 Score=26.55 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=15.8
Q ss_pred cccccccH--HHHHHHHhCCC
Q 014137 101 VDQYHRYK--EDVDIMANLNF 119 (430)
Q Consensus 101 ~d~Y~~y~--eDi~l~~~lG~ 119 (430)
.|||..|+ +|++.|+++|+
T Consensus 46 adFYknYD~~kdFerM~~~G~ 66 (70)
T cd00927 46 ADFYKTYDAMKDFERMRKAGL 66 (70)
T ss_pred HHHHHccChHHHHHHHHHcCC
Confidence 57887774 78999999996
No 179
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=25.56 E-value=2.2e+02 Score=28.27 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHcCCe-ee-e---------------ecCCCCCcHHHHHhcCCCCCh-Hh-HHHHHHHHHHHHHHhCCc-
Q 014137 145 AYYNQLINYLLKRGIT-PY-A---------------NLYHYDLPEALEKKYNGLLSK-RV-VKDFADYADFCFKTFGDR- 204 (430)
Q Consensus 145 ~~y~~~i~~l~~~gi~-p~-v---------------tL~H~d~P~~l~~~~gg~~~~-~~-~~~f~~ya~~~~~~fgd~- 204 (430)
+.|.++++.+++.||+ || + .+++-++|.|+.+++...... +. .+.=.+||....+.+-+.
T Consensus 189 ~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~~~d~~~~~~~~Gi~~a~e~i~~L~~~g 268 (296)
T PRK09432 189 ESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDGLDDDAETRKLVGASIAMDMVKILSREG 268 (296)
T ss_pred HHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 5578899999999855 22 2 345789999999988776443 21 112234555555443332
Q ss_pred c--eeEeeccCcchhh
Q 014137 205 V--KNWMTFNEPRVVA 218 (430)
Q Consensus 205 v--~~w~t~NEp~~~~ 218 (430)
| -|..|+|-+....
T Consensus 269 v~GvH~yt~n~~~~~~ 284 (296)
T PRK09432 269 VKDFHFYTLNRAELTY 284 (296)
T ss_pred CCEEEEecCCChHHHH
Confidence 2 3456899887653
No 180
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=25.56 E-value=2.9e+02 Score=28.80 Aligned_cols=95 Identities=18% Similarity=0.203 Sum_probs=59.1
Q ss_pred cHHHHHHHHhCCCCEEEeccCCcccccCC---CCC--CChhhh-HHHHHHHHHHHHcCCeeeeec-----------CCCC
Q 014137 107 YKEDVDIMANLNFDAYRFSISWSRIFPYG---TGK--VNWKGV-AYYNQLINYLLKRGITPYANL-----------YHYD 169 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~---~g~--~n~~~~-~~y~~~i~~l~~~gi~p~vtL-----------~H~d 169 (430)
..+-++.++++|++.+=+.=-|..---.. -|. +|++-+ .-...+++.+++.|+++=+=+ + -.
T Consensus 60 i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l~-~~ 138 (394)
T PF02065_consen 60 ILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVSPDSDLY-RE 138 (394)
T ss_dssp HHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEESSSCHC-CS
T ss_pred HHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccccchhHHH-Hh
Confidence 45667999999999988888997541111 022 232211 116899999999999975422 1 24
Q ss_pred CcHHHHHhc-----CC-------CCChHhHHHHHHHHHHHHHHhC
Q 014137 170 LPEALEKKY-----NG-------LLSKRVVKDFADYADFCFKTFG 202 (430)
Q Consensus 170 ~P~~l~~~~-----gg-------~~~~~~~~~f~~ya~~~~~~fg 202 (430)
.|.|+...- .| ..+|+..+...+-...+++.+|
T Consensus 139 hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g 183 (394)
T PF02065_consen 139 HPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG 183 (394)
T ss_dssp SBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT
T ss_pred CccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 588864310 11 3577888888888888888886
No 181
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.46 E-value=5.8e+02 Score=24.42 Aligned_cols=52 Identities=19% Similarity=0.119 Sum_probs=34.6
Q ss_pred cHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeee
Q 014137 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY 162 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~ 162 (430)
+++-++.++++|++.+=+++.=....+.. -.++. ...+.+-+.+.++||+..
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~-~~~~~---~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDESDERLAR-LDWSR---EQRLALVNALVETGFRVN 74 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCccccchhc-cCCCH---HHHHHHHHHHHHcCCcee
Confidence 68899999999999998864211111111 11232 346778888899999975
No 182
>PRK05660 HemN family oxidoreductase; Provisional
Probab=25.35 E-value=2.7e+02 Score=28.53 Aligned_cols=93 Identities=12% Similarity=0.151 Sum_probs=59.2
Q ss_pred HHHHHHHHhCCCCEEEecc-CCc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCeee-eecCCCCCcHHHHHhcCCCCCh
Q 014137 108 KEDVDIMANLNFDAYRFSI-SWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEALEKKYNGLLSK 184 (430)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi-~Ws-ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~d~P~~l~~~~gg~~~~ 184 (430)
++.++.|+++|++-+-++| +=+ ++...- |... ..+-..+.++.+++.|+..+ ++| -+++|.
T Consensus 107 ~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l-~r~~--~~~~~~~ai~~~~~~G~~~v~~dl-i~Glpg------------ 170 (378)
T PRK05660 107 ADRFVGYQRAGVNRISIGVQSFSEEKLKRL-GRIH--GPDEAKRAAKLAQGLGLRSFNLDL-MHGLPD------------ 170 (378)
T ss_pred HHHHHHHHHcCCCEEEeccCcCCHHHHHHh-CCCC--CHHHHHHHHHHHHHcCCCeEEEEe-ecCCCC------------
Confidence 5899999999999666666 332 222111 2221 23456778999999999875 555 355662
Q ss_pred HhHHHHHHHHHHHHHHhCCcceeEeeccCcch
Q 014137 185 RVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (430)
Q Consensus 185 ~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~ 216 (430)
++.+.+.+-.+.+.+.=-+.+..+...=||+.
T Consensus 171 qt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT 202 (378)
T PRK05660 171 QSLEEALDDLRQAIALNPPHLSWYQLTIEPNT 202 (378)
T ss_pred CCHHHHHHHHHHHHhcCCCeEEeeccEeccCC
Confidence 34566666666655544467777777667764
No 183
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=25.20 E-value=94 Score=29.62 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=43.9
Q ss_pred CCcccccccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcH
Q 014137 99 VSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPE 172 (430)
Q Consensus 99 ~A~d~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~ 172 (430)
+|.|..+. ++.+++++++|....-+-|-+.-+.- +=.++|+.|++.|...+++++-.|+|.
T Consensus 7 lAlD~~~~-~~~l~~~~~~~~~~~~ikvg~~~f~~------------~G~~~i~~l~~~~~~i~~D~Kl~Di~~ 67 (230)
T PRK00230 7 VALDFPSK-EEALAFLDQLDPAVLFVKVGMELFTA------------GGPQFVRELKQRGFKVFLDLKLHDIPN 67 (230)
T ss_pred EEcCCCCH-HHHHHHHHhcCCcccEEEEcHHHHHh------------cCHHHHHHHHhcCCCEEEEeehhhccc
Confidence 46666665 78999999998664444444444331 115678999998999999999889985
No 184
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=25.08 E-value=4.1e+02 Score=27.43 Aligned_cols=92 Identities=16% Similarity=0.124 Sum_probs=52.4
Q ss_pred ccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeee-ecCCCCCcHHHHHhcCCCCCh
Q 014137 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYA-NLYHYDLPEALEKKYNGLLSK 184 (430)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v-tL~H~d~P~~l~~~~gg~~~~ 184 (430)
...+-++.++++|++.+=| ....+.|-+ -...+.. ...+++-+.|.++||++.. +..-+..|.+ +.|++.++
T Consensus 33 ~~~e~i~~la~~GfdgVE~--~~~dl~P~~-~~~~e~~-~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~---~~g~las~ 105 (382)
T TIGR02631 33 DPVEAVHKLAELGAYGVTF--HDDDLIPFG-APPQERD-QIVRRFKKALDETGLKVPMVTTNLFSHPVF---KDGGFTSN 105 (382)
T ss_pred CHHHHHHHHHHhCCCEEEe--cccccCCCC-CChhHHH-HHHHHHHHHHHHhCCeEEEeeccccCCccc---cCCCCCCC
Confidence 4588899999999999854 334455553 1111111 3367788889999999654 4422222333 12677764
Q ss_pred --HhHHHHHHHHHH---HHHHhCCc
Q 014137 185 --RVVKDFADYADF---CFKTFGDR 204 (430)
Q Consensus 185 --~~~~~f~~ya~~---~~~~fgd~ 204 (430)
++.+.-.++.+. +++.+|-.
T Consensus 106 d~~vR~~ai~~~kraId~A~eLGa~ 130 (382)
T TIGR02631 106 DRSVRRYALRKVLRNMDLGAELGAE 130 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 333332333333 36667654
No 185
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=24.87 E-value=2.2e+02 Score=24.86 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChHhHHHHHHHHHHHHHHhCCc
Q 014137 144 VAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDR 204 (430)
Q Consensus 144 ~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~fgd~ 204 (430)
.+=+.-+++.|++.|++|++.+.=. .+.|.. |-| .+++..+.|.+=.+..+++.|=+
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~Pv-Ng~wyd--ytG-~~~~~r~~~y~kI~~~~~~~gf~ 91 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQPV-NGKWYD--YTG-LSKEMRQEYYKKIKYQLKSQGFN 91 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-----HHHHH--HTT---HHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHHcCCceEEEecCC-cHHHHH--HhC-CCHHHHHHHHHHHHHHHHHCCCE
Confidence 3446889999999999999988410 123432 455 45677777777777788888754
No 186
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=24.81 E-value=53 Score=20.26 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCCee
Q 014137 147 YNQLINYLLKRGITP 161 (430)
Q Consensus 147 y~~~i~~l~~~gi~p 161 (430)
-.++++.+++.||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 477888888899887
No 187
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=24.72 E-value=74 Score=28.56 Aligned_cols=63 Identities=10% Similarity=-0.042 Sum_probs=41.4
Q ss_pred cccccHHHHHHHHhCCCCEEEeccCCcccccCCC-CCCChhhhHHHHHHHHHHHHcCCeeeeec
Q 014137 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANL 165 (430)
Q Consensus 103 ~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 165 (430)
.....++-+++++.+|.+.+++...+-...+... ..--...++.++.+.+.+.++|+++.+=-
T Consensus 69 ~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 132 (213)
T PF01261_consen 69 ALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALEN 132 (213)
T ss_dssp HHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-
T ss_pred HHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEec
Confidence 3556788899999999999999976411111110 11112245678888888899998866543
No 188
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=24.45 E-value=2.8e+02 Score=29.12 Aligned_cols=52 Identities=23% Similarity=0.300 Sum_probs=38.3
Q ss_pred cccccHHHH-----HHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCC
Q 014137 103 QYHRYKEDV-----DIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYH 167 (430)
Q Consensus 103 ~Y~~y~eDi-----~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H 167 (430)
.|.+|.+|+ ++..+-|++.||+- ...|. ++-.+.-|+..++.|-....+++-
T Consensus 91 GYrhyaDDvVe~Fv~ka~~nGidvfRiF-----------DAlND--~RNl~~ai~a~kk~G~h~q~~i~Y 147 (472)
T COG5016 91 GYRHYADDVVEKFVEKAAENGIDVFRIF-----------DALND--VRNLKTAIKAAKKHGAHVQGTISY 147 (472)
T ss_pred cccCCchHHHHHHHHHHHhcCCcEEEec-----------hhccc--hhHHHHHHHHHHhcCceeEEEEEe
Confidence 577788884 88899999999964 22332 345677788888888888777763
No 189
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=24.28 E-value=1.4e+02 Score=31.55 Aligned_cols=86 Identities=20% Similarity=0.303 Sum_probs=50.1
Q ss_pred cHHHHHHHHhCCCCEEEeccCCcccccCC---CCCCChhhhHHHHHHHHHHHHcCCe-eeeecCCCCCcHHHHHhcCCCC
Q 014137 107 YKEDVDIMANLNFDAYRFSISWSRIFPYG---TGKVNWKGVAYYNQLINYLLKRGIT-PYANLYHYDLPEALEKKYNGLL 182 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~---~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtL~H~d~P~~l~~~~gg~~ 182 (430)
=+|.+++|+++|++.+-+++ .-.-|+- -|.. ...+-..+.|+.+++.|++ .-++|- +++|.
T Consensus 151 t~e~l~~L~~~G~~rvsiGv--QS~~~~vl~~l~R~--~~~~~~~~ai~~lr~~G~~~v~~dli-~GlPg---------- 215 (453)
T PRK13347 151 TAEMLQALAALGFNRASFGV--QDFDPQVQKAINRI--QPEEMVARAVELLRAAGFESINFDLI-YGLPH---------- 215 (453)
T ss_pred CHHHHHHHHHcCCCEEEECC--CCCCHHHHHHhCCC--CCHHHHHHHHHHHHhcCCCcEEEeEE-EeCCC----------
Confidence 47899999999999666655 3332221 0221 1245678899999999997 344542 44552
Q ss_pred ChHhHHHHHHHHHHHHHHhCCcceeEe
Q 014137 183 SKRVVKDFADYADFCFKTFGDRVKNWM 209 (430)
Q Consensus 183 ~~~~~~~f~~ya~~~~~~fgd~v~~w~ 209 (430)
++.+.|.+-.+.+.+.=-+++..+.
T Consensus 216 --qt~e~~~~tl~~~~~l~p~~i~~y~ 240 (453)
T PRK13347 216 --QTVESFRETLDKVIALSPDRIAVFG 240 (453)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEec
Confidence 2355666656655442223444443
No 190
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=23.77 E-value=2.9e+02 Score=28.83 Aligned_cols=92 Identities=12% Similarity=0.226 Sum_probs=53.5
Q ss_pred cHHHHHHHHhCCCCEEEecc-CCc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCeee-eecCCCCCcHHHHHhcCCCCC
Q 014137 107 YKEDVDIMANLNFDAYRFSI-SWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEALEKKYNGLLS 183 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi-~Ws-ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~d~P~~l~~~~gg~~~ 183 (430)
-+|.+++|+++|++.+.+++ +=+ ++...- |+-. ..+-..+.|+.|++.|+..+ ++|- +++|.
T Consensus 140 t~e~l~~l~~~G~~rvslGvQS~~~~~L~~l-~R~~--~~~~~~~ai~~l~~~g~~~i~~dlI-~GlP~----------- 204 (430)
T PRK08208 140 TAEKLALLAARGVNRLSIGVQSFHDSELHAL-HRPQ--KRADVHQALEWIRAAGFPILNIDLI-YGIPG----------- 204 (430)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHh-CCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC-----------
Confidence 36889999999999766666 332 232221 3221 23567889999999999864 4542 45552
Q ss_pred hHhHHHHHHHHHHHHHHhC-CcceeEeeccCcc
Q 014137 184 KRVVKDFADYADFCFKTFG-DRVKNWMTFNEPR 215 (430)
Q Consensus 184 ~~~~~~f~~ya~~~~~~fg-d~v~~w~t~NEp~ 215 (430)
++.+.|.+=.+.+.+ ++ +.+..+...=||+
T Consensus 205 -qt~e~~~~~l~~~~~-l~~~~is~y~L~~~~~ 235 (430)
T PRK08208 205 -QTHASWMESLDQALV-YRPEELFLYPLYVRPL 235 (430)
T ss_pred -CCHHHHHHHHHHHHh-CCCCEEEEccccccCC
Confidence 234455554555443 43 3455554433443
No 191
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=23.65 E-value=2.2e+02 Score=31.87 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=44.0
Q ss_pred HHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChHhHHHHHHHHHHHHHH
Q 014137 147 YNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKT 200 (430)
Q Consensus 147 y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~ 200 (430)
...+++.++++|+..=+..+|-.++.-+..+||. +....++--.+|++.|-+.
T Consensus 212 f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~e~~ 264 (733)
T PLN02925 212 FTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKL 264 (733)
T ss_pred HHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHHHHC
Confidence 3449999999999999999999999999999875 5556788778888877544
No 192
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=23.37 E-value=2.3e+02 Score=22.14 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=31.8
Q ss_pred HHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeec
Q 014137 112 DIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (430)
Q Consensus 112 ~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 165 (430)
+.++.+|+.++|=| . +..+.+-++++++.|+ .|....+|.
T Consensus 27 ~~~~~~G~~~iRGS--------s-----~rgg~~Alr~~~~~lk-~G~~~~itp 66 (74)
T PF04028_consen 27 RVLERFGFRTIRGS--------S-----SRGGARALREMLRALK-EGYSIAITP 66 (74)
T ss_pred HHHHHcCCCeEEeC--------C-----CCcHHHHHHHHHHHHH-CCCeEEEeC
Confidence 78999999999998 2 2235677899999999 777777765
No 193
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=23.36 E-value=1e+02 Score=29.57 Aligned_cols=62 Identities=11% Similarity=0.071 Sum_probs=40.8
Q ss_pred ccccccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeee
Q 014137 102 DQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYAN 164 (430)
Q Consensus 102 d~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 164 (430)
....+++.-|++.+.+|.+.+++.-......+.. ...-+..++.++.+.+.+.++||+..+=
T Consensus 87 ~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 87 ESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP-NVIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 3456677788999999999999964322111111 1111334667888899999999876654
No 194
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=23.27 E-value=2.7e+02 Score=30.61 Aligned_cols=93 Identities=12% Similarity=0.044 Sum_probs=54.8
Q ss_pred cHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcH----HHH-------
Q 014137 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPE----ALE------- 175 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~----~l~------- 175 (430)
.++|+++.++.|++.+|+..+-+.+ +-....++..+++|....+++..-+.|. .+.
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~ 164 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV-------------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELE 164 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 4567889999999999998765554 1235555666666666555553222231 110
Q ss_pred ----------HhcCCCCChHhHHHHHHHHHHHHHHhCCcceeEeeccCcchh
Q 014137 176 ----------KKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVV 217 (430)
Q Consensus 176 ----------~~~gg~~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~ 217 (430)
|- .|-..| ....+..+.+-++++ ..-...+.|-..+.
T Consensus 165 ~~Gad~I~i~Dt-~G~~~P---~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gla 211 (592)
T PRK09282 165 EMGCDSICIKDM-AGLLTP---YAAYELVKALKEEVD-LPVQLHSHCTSGLA 211 (592)
T ss_pred HcCCCEEEECCc-CCCcCH---HHHHHHHHHHHHhCC-CeEEEEEcCCCCcH
Confidence 11 344554 444566666667775 33457788877653
No 195
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=23.02 E-value=4.8e+02 Score=25.00 Aligned_cols=54 Identities=7% Similarity=0.040 Sum_probs=37.8
Q ss_pred cccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHc-CCeeee
Q 014137 105 HRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKR-GITPYA 163 (430)
Q Consensus 105 ~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~-gi~p~v 163 (430)
..+++-+++++++|++.+=+.+......+.. ..+. +..+++.+.+.++ |+...+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR--PLKK---ERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC--CCCH---HHHHHHHHHHHHcCCCcEEE
Confidence 5679999999999999998888765544332 1233 3467777777777 666544
No 196
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=22.87 E-value=3.4e+02 Score=26.47 Aligned_cols=62 Identities=13% Similarity=0.214 Sum_probs=42.8
Q ss_pred CCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCChHhHHHHHHHHHHHHHHhCCcceeEeec
Q 014137 136 TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTF 211 (430)
Q Consensus 136 ~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~ 211 (430)
+|.+|.++ ++++++.|.+.|+..++.+-+- |-+ ..-+.+...+..+.+.+.-++++..+.-.
T Consensus 13 ~g~iD~~~---~~~~i~~l~~~Gv~Gi~~~Gst----------GE~-~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv 74 (285)
T TIGR00674 13 DGSVDFAA---LEKLIDFQIENGTDAIVVVGTT----------GES-PTLSHEEHKKVIEFVVDLVNGRVPVIAGT 74 (285)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECccC----------ccc-ccCCHHHHHHHHHHHHHHhCCCCeEEEeC
Confidence 38999866 6899999999999999877431 111 11234566666777777777777655544
No 197
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=22.82 E-value=3.5e+02 Score=26.65 Aligned_cols=84 Identities=13% Similarity=0.084 Sum_probs=54.5
Q ss_pred HHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCC----cHHHHHhcCCCCChHh
Q 014137 111 VDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDL----PEALEKKYNGLLSKRV 186 (430)
Q Consensus 111 i~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~----P~~l~~~~gg~~~~~~ 186 (430)
.+.+++.+-+-=-++..|-+|-|+| .+... ...++++.++++|++.++.+..++- +.-+.. -..+++.
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g--~~~~~---~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~---~l~~~~~ 87 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADG--TLTGL---PDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHA---VLSNPEA 87 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCC--CCCCC---CCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHH---HhcCHHH
Confidence 5666666666666788888887765 33322 2368999999999999999976641 111110 1235666
Q ss_pred HHHHHHHHHHHHHHhC
Q 014137 187 VKDFADYADFCFKTFG 202 (430)
Q Consensus 187 ~~~f~~ya~~~~~~fg 202 (430)
.+.|++=.-.+++++|
T Consensus 88 r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 88 RQRLINNILALAKKYG 103 (313)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 7777666666666664
No 198
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=22.55 E-value=3.1e+02 Score=24.99 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhCCccee
Q 014137 187 VKDFADYADFCFKTFGDRVKN 207 (430)
Q Consensus 187 ~~~f~~ya~~~~~~fgd~v~~ 207 (430)
.+....|++.+-++.|.++-.
T Consensus 109 ~~~~~~f~~~v~~~~G~~~~i 129 (191)
T cd06413 109 LAELQVFLDALEAHYGKRPII 129 (191)
T ss_pred HHHHHHHHHHHHHHHCCCeEE
Confidence 344455555554445544433
No 199
>PRK10426 alpha-glucosidase; Provisional
Probab=22.54 E-value=6.4e+02 Score=28.00 Aligned_cols=105 Identities=20% Similarity=0.210 Sum_probs=63.3
Q ss_pred cHHHHHHHHhCCCC--EEEeccCCcccccCCCC-------CCChhhhHHHHHHHHHHHHcCCeeeeecCCC---CCcHHH
Q 014137 107 YKEDVDIMANLNFD--AYRFSISWSRIFPYGTG-------KVNWKGVAYYNQLINYLLKRGITPYANLYHY---DLPEAL 174 (430)
Q Consensus 107 y~eDi~l~~~lG~~--~~Rfsi~Wsri~P~~~g-------~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---d~P~~l 174 (430)
..+-++.+++.|+. ++=+. .|+.......| .+|.+-.--.+++|++|++.|++.++.+.-+ +.|..-
T Consensus 223 v~~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~ 301 (635)
T PRK10426 223 VQKKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCE 301 (635)
T ss_pred HHHHHHHHHHcCCCeeEEEEe-cccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHH
Confidence 34556888888865 43333 67644221111 2344433345899999999999988766532 333332
Q ss_pred HHh---c------------------C---CCCChHhHHHHHHHHHHHHHHhCCccee-EeeccCc
Q 014137 175 EKK---Y------------------N---GLLSKRVVKDFADYADFCFKTFGDRVKN-WMTFNEP 214 (430)
Q Consensus 175 ~~~---~------------------g---g~~~~~~~~~f~~ya~~~~~~fgd~v~~-w~t~NEp 214 (430)
+.+ | + .++||+..+.|.+..+..+...| |+. |.=+||+
T Consensus 302 e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 302 EAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 211 0 1 16799999999877665555555 655 5788994
No 200
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=22.45 E-value=2e+02 Score=34.16 Aligned_cols=99 Identities=18% Similarity=0.270 Sum_probs=57.5
Q ss_pred ccccHHHHHHHHhCCCCEEEeccCCc--cc---------c--------------------cCCCCCCChh----hhHHHH
Q 014137 104 YHRYKEDVDIMANLNFDAYRFSISWS--RI---------F--------------------PYGTGKVNWK----GVAYYN 148 (430)
Q Consensus 104 Y~~y~eDi~l~~~lG~~~~Rfsi~Ws--ri---------~--------------------P~~~g~~n~~----~~~~y~ 148 (430)
|.-..+-++.+|+||++++-+.=-.+ -+ . |++.-..|+. .++=++
T Consensus 479 f~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~EfK 558 (1111)
T TIGR02102 479 FAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEFK 558 (1111)
T ss_pred HHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHHH
Confidence 44456679999999999998654321 00 0 1110000110 146689
Q ss_pred HHHHHHHHcCCeeeeecC--CCC--------CcHHHHH---------hcCC----CCChHhHHHHHHHHHHHHHHhC
Q 014137 149 QLINYLLKRGITPYANLY--HYD--------LPEALEK---------KYNG----LLSKRVVKDFADYADFCFKTFG 202 (430)
Q Consensus 149 ~~i~~l~~~gi~p~vtL~--H~d--------~P~~l~~---------~~gg----~~~~~~~~~f~~ya~~~~~~fg 202 (430)
+||++|.++||++|+++- |.. .|.|... .++| ..++.+.+.+.+-++..+++|+
T Consensus 559 ~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~ 635 (1111)
T TIGR02102 559 NLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEFK 635 (1111)
T ss_pred HHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999843 421 1322210 0111 1245666777777777777763
No 201
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=22.33 E-value=1.3e+02 Score=26.19 Aligned_cols=58 Identities=12% Similarity=0.043 Sum_probs=39.5
Q ss_pred cHHHHHHHHhCCCCEEEeccCCc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeec
Q 014137 107 YKEDVDIMANLNFDAYRFSISWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Ws-ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 165 (430)
-+++++.|+++|+..+.+|++-. .-.-.... -....++.+-+.|+.+.++|+...+++
T Consensus 87 ~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 145 (204)
T cd01335 87 TEELLKELKELGLDGVGVSLDSGDEEVADKIR-GSGESFKERLEALKELREAGLGLSTTL 145 (204)
T ss_pred CHHHHHHHHhCCCceEEEEcccCCHHHHHHHh-cCCcCHHHHHHHHHHHHHcCCCceEEE
Confidence 48899999999999999999533 32211100 011235667888889999888877665
No 202
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=22.30 E-value=6.2e+02 Score=24.23 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=0.0
Q ss_pred cHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeee--eecCCCCCcHHHHHhcCCCCCh
Q 014137 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY--ANLYHYDLPEALEKKYNGLLSK 184 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~--vtL~H~d~P~~l~~~~gg~~~~ 184 (430)
+.|-+++++++|++.+=+++.-....+.. -.++.+.+ ..+-+.|.++||++. -+-.|...| -+-.++
T Consensus 18 ~~e~l~~~~~~G~~~VEl~~~~~~~~~~~-~~~~~~~~---~~~~~~l~~~gl~i~~~~~~~~~~~~-------l~~~~~ 86 (279)
T TIGR00542 18 WLERLQLAKTCGFDFVEMSVDETDDRLSR-LDWSREQR---LALVNAIIETGVRIPSMCLSAHRRFP-------LGSKDK 86 (279)
T ss_pred HHHHHHHHHHcCCCEEEEecCCccchhhc-cCCCHHHH---HHHHHHHHHcCCCceeeecCCCccCc-------CCCcCH
Q ss_pred HhHHHHHHHHHHHHH
Q 014137 185 RVVKDFADYADFCFK 199 (430)
Q Consensus 185 ~~~~~f~~ya~~~~~ 199 (430)
+..+...++.+.+++
T Consensus 87 ~~r~~~~~~~~~~i~ 101 (279)
T TIGR00542 87 AVRQQGLEIMEKAIQ 101 (279)
T ss_pred HHHHHHHHHHHHHHH
No 203
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=22.23 E-value=4.8e+02 Score=26.64 Aligned_cols=94 Identities=11% Similarity=0.105 Sum_probs=60.4
Q ss_pred cHHHHHHHHhCCCCEEEeccCCcccccCC---CCCCChhhhHHHHHHHHHHHHcCCee-eeecCCCCCcHHHHHhcCCCC
Q 014137 107 YKEDVDIMANLNFDAYRFSISWSRIFPYG---TGKVNWKGVAYYNQLINYLLKRGITP-YANLYHYDLPEALEKKYNGLL 182 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~---~g~~n~~~~~~y~~~i~~l~~~gi~p-~vtL~H~d~P~~l~~~~gg~~ 182 (430)
-++.++.|+++|+|.+.+++ .-+-++- -|... ..+-..+.++.+++.|+.. -++|- +++|.
T Consensus 102 ~~~~l~~l~~~G~nrislGv--QS~~~~~L~~l~R~~--~~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg---------- 166 (370)
T PRK06294 102 SESYIRALALTGINRISIGV--QTFDDPLLKLLGRTH--SSSKAIDAVQECSEHGFSNLSIDLI-YGLPT---------- 166 (370)
T ss_pred CHHHHHHHHHCCCCEEEEcc--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC----------
Confidence 37889999999999555554 3332221 13221 1344677889999999974 45553 45552
Q ss_pred ChHhHHHHHHHHHHHHHHhCCcceeEeeccCcchh
Q 014137 183 SKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVV 217 (430)
Q Consensus 183 ~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~ 217 (430)
++.+.|.+=.+.+.+.=-+.|..+...=||+..
T Consensus 167 --qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 --QSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred --CCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 346677777777665434678888888888854
No 204
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=22.09 E-value=3.7e+02 Score=27.88 Aligned_cols=108 Identities=17% Similarity=0.215 Sum_probs=64.7
Q ss_pred cHHHHHHHHhCCCC--EEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCC---CCc---HHHHHh-
Q 014137 107 YKEDVDIMANLNFD--AYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHY---DLP---EALEKK- 177 (430)
Q Consensus 107 y~eDi~l~~~lG~~--~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---d~P---~~l~~~- 177 (430)
..+-++.+++.|+- ++=+...|..-.. +-.+|++-+.-.+++++.|+++|++.++.++-+ +.+ ..-+.+
T Consensus 45 v~~~i~~~~~~~iP~d~~~iD~~~~~~~~--~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~ 122 (441)
T PF01055_consen 45 VREVIDRYRSNGIPLDVIWIDDDYQDGYG--DFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKE 122 (441)
T ss_dssp HHHHHHHHHHTT--EEEEEE-GGGSBTTB--TT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHH
T ss_pred HHHHHHHHHHcCCCccceecccccccccc--ccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhh
Confidence 45667777777765 4445555655322 235666555567999999999999977765422 222 111100
Q ss_pred --c-----CC----------------CCChHhHHHHHHHHHHHHHHhCCcceeEeeccCcchh
Q 014137 178 --Y-----NG----------------LLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVV 217 (430)
Q Consensus 178 --~-----gg----------------~~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~ 217 (430)
+ .| |.|++..+.|.+..+.+++.+| ---+|+=+|||..+
T Consensus 123 ~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~E~~~~ 184 (441)
T PF01055_consen 123 KGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYG-VDGWWLDFGEPSSF 184 (441)
T ss_dssp TT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred cCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccC-CceEEeecCCcccc
Confidence 1 12 7788889999888777777664 24568899999875
No 205
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=22.08 E-value=1.7e+02 Score=28.37 Aligned_cols=55 Identities=24% Similarity=0.374 Sum_probs=37.3
Q ss_pred CCCCCCCcccccccHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeec
Q 014137 94 NATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (430)
Q Consensus 94 ~~~~d~A~d~Y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 165 (430)
..||++.. +++|++|++.+=++=|=.|..= ++-| +.-.+=+..++++||+|++++
T Consensus 72 a~TGevS~----------~mLkd~G~~~viiGHSERR~~f---~Etd----~~v~~K~~~a~~~gl~pIvCi 126 (250)
T PRK00042 72 AFTGEISA----------EMLKDLGVKYVIIGHSERRQYF---GETD----ELVNKKVKAALKAGLTPILCV 126 (250)
T ss_pred CccCccCH----------HHHHHCCCCEEEeCcccccCcc---CcCH----HHHHHHHHHHHHCCCEEEEEc
Confidence 34666665 8999999999988875444321 2222 223444445999999999998
No 206
>PRK01060 endonuclease IV; Provisional
Probab=21.76 E-value=3.6e+02 Score=25.87 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=36.3
Q ss_pred cHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCee
Q 014137 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITP 161 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p 161 (430)
+++-++.++++|++++-+.+.-++.+.. +..+.+- .+++-+.+.++|++.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~--~~~~~~~---~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKR--KPLEELN---IEAFKAACEKYGISP 63 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcC--CCCCHHH---HHHHHHHHHHcCCCC
Confidence 6888999999999999998766554432 3445433 455666677999984
No 207
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=21.68 E-value=2.8e+02 Score=26.75 Aligned_cols=89 Identities=15% Similarity=0.178 Sum_probs=50.0
Q ss_pred HHHHHHHHhCCCC--EEEeccCCcccccCCCC--CCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHHhcCCCCC
Q 014137 108 KEDVDIMANLNFD--AYRFSISWSRIFPYGTG--KVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLS 183 (430)
Q Consensus 108 ~eDi~l~~~lG~~--~~Rfsi~Wsri~P~~~g--~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~~~gg~~~ 183 (430)
.+-++.+++.|+. ++=+.+.|..-. +.- .+|.+-..--+++|+.|+++|++.++.+. |.
T Consensus 27 ~~~~~~~~~~~iP~d~~~lD~~~~~~~--~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~----P~----------- 89 (265)
T cd06589 27 LEVIDGMRENDIPLDGFVLDDDYTDGY--GDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWID----PY----------- 89 (265)
T ss_pred HHHHHHHHHcCCCccEEEECcccccCC--ceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeC----hh-----------
Confidence 3444555554433 444444444321 111 33443344458999999999999998774 32
Q ss_pred hHhHHHHHHHHHHHHHHhCCcc-eeEeeccCcchh
Q 014137 184 KRVVKDFADYADFCFKTFGDRV-KNWMTFNEPRVV 217 (430)
Q Consensus 184 ~~~~~~f~~ya~~~~~~fgd~v-~~w~t~NEp~~~ 217 (430)
+.+.|.+..+.+.... -| -+|+=+|||...
T Consensus 90 --v~~w~~~~~~~~~~~~--Gvdg~w~D~~E~~~~ 120 (265)
T cd06589 90 --IREWWAEVVKKLLVSL--GVDGFWTDMGEPSPG 120 (265)
T ss_pred --HHHHHHHHHHHhhccC--CCCEEeccCCCCCcC
Confidence 1455555444432222 34 458899999754
No 208
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=21.62 E-value=1.4e+02 Score=22.34 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=24.4
Q ss_pred HHHHHHHHH-cCCeeeeecCCCCCcHHHHHhcCCCCChHhHHHHHHHH
Q 014137 148 NQLINYLLK-RGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYA 194 (430)
Q Consensus 148 ~~~i~~l~~-~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~~~~f~~ya 194 (430)
+++++.|.+ .||+|.+|.. .|-. +-+++.+.|..|-
T Consensus 19 ~E~v~~L~~~a~I~P~~T~~-----VW~~------LekeN~eFF~aY~ 55 (57)
T TIGR01589 19 EETVSFLFENAGISPKFTRF-----VWYL------LEKENADFFRCYK 55 (57)
T ss_pred HHHHHHHHHHcCCCchhHHH-----HHHH------HHHHHHHHHHHHh
Confidence 567777765 8999999874 4532 2246677777763
No 209
>PRK09936 hypothetical protein; Provisional
Probab=21.59 E-value=8.1e+02 Score=24.54 Aligned_cols=62 Identities=18% Similarity=0.300 Sum_probs=44.3
Q ss_pred cHHHHHHHHhCCCCEEEeccCCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeecCCCCCcHHHHH
Q 014137 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEK 176 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~d~P~~l~~ 176 (430)
|++=++.++.+|+++. =+-|++.--..-|.-+ .+..+.++...+.||+.+|.|+ +| |.|.+.
T Consensus 40 Wq~~~~~~~~~G~~tL--ivQWt~yG~~~fg~~~----g~La~~l~~A~~~Gl~v~vGL~-~D-p~y~q~ 101 (296)
T PRK09936 40 WQGLWSQLRLQGFDTL--VVQWTRYGDADFGGQR----GWLAKRLAAAQQAGLKLVVGLY-AD-PEFFMH 101 (296)
T ss_pred HHHHHHHHHHcCCcEE--EEEeeeccCCCcccch----HHHHHHHHHHHHcCCEEEEccc-CC-hHHHHH
Confidence 4666789999999986 3578888211112222 3689999999999999999996 45 455443
No 210
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=21.45 E-value=2.8e+02 Score=27.45 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=36.5
Q ss_pred cHHHHHHHHhCCCCEEE-eccC-C-c----ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeec
Q 014137 107 YKEDVDIMANLNFDAYR-FSIS-W-S----RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (430)
Q Consensus 107 y~eDi~l~~~lG~~~~R-fsi~-W-s----ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 165 (430)
.+|.++.||++|++++- .+.+ - . ++.|. ... .+-+.+.++.+++.||++..++
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~---~~t---~~~~l~~i~~a~~~Gi~~~s~~ 165 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPN---KLS---SDEWLEVIKTAHRLGIPTTATM 165 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCC---CCC---HHHHHHHHHHHHHcCCCceeeE
Confidence 47889999999999884 2321 1 1 22232 222 3556899999999999998775
No 211
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=21.11 E-value=1e+02 Score=22.74 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=23.6
Q ss_pred HHHHHHHH-HcCCeeeeecCCCCCcHHHHHhcCCCCChHhHHHHHHH
Q 014137 148 NQLINYLL-KRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADY 193 (430)
Q Consensus 148 ~~~i~~l~-~~gi~p~vtL~H~d~P~~l~~~~gg~~~~~~~~~f~~y 193 (430)
+++++.|. ..||+|.+|.. .|-. +-+++.+.|..|
T Consensus 16 ~E~v~~L~~~a~I~P~~T~~-----VW~~------Le~eN~eFF~aY 51 (54)
T PF09713_consen 16 EECVRALQKQANIEPVFTST-----VWQK------LEKENPEFFKAY 51 (54)
T ss_pred HHHHHHHHHHcCCChHHHHH-----HHHH------HHHHCHHHHHHh
Confidence 67888885 56999999985 4422 224556667666
No 212
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=21.06 E-value=3.5e+02 Score=29.81 Aligned_cols=100 Identities=16% Similarity=0.145 Sum_probs=53.9
Q ss_pred cccccHH-----HHHHHHhCCCCEEEeccC--CcccccCC------CCCC---------C-hhhhHHHHHHHHHHHHcCC
Q 014137 103 QYHRYKE-----DVDIMANLNFDAYRFSIS--WSRIFPYG------TGKV---------N-WKGVAYYNQLINYLLKRGI 159 (430)
Q Consensus 103 ~Y~~y~e-----Di~l~~~lG~~~~Rfsi~--Wsri~P~~------~g~~---------n-~~~~~~y~~~i~~l~~~gi 159 (430)
.|..|.+ +++++++.|++.+|+.-+ |-|..... .|.. + .-.+++|.+++++|.+.|+
T Consensus 89 Gy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Ga 168 (596)
T PRK14042 89 GYRNYADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGC 168 (596)
T ss_pred ccccCChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCC
Confidence 4555665 679999999999998643 22222110 0110 0 0114555666666666555
Q ss_pred eeeeecCCCCCcHHHHHhcCCCCChHhHHHHHHHHHHHHHHhCCcceeEeeccCcchh
Q 014137 160 TPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVV 217 (430)
Q Consensus 160 ~p~vtL~H~d~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~ 217 (430)
. .++|- |- .|..+|.. ..+..+.+-++++ ..-...+.|-..+.
T Consensus 169 d-~I~Ik---------Dt-aG~l~P~~---v~~lv~alk~~~~-ipi~~H~Hnt~Gla 211 (596)
T PRK14042 169 D-SIAIK---------DM-AGLLTPTV---TVELYAGLKQATG-LPVHLHSHSTSGLA 211 (596)
T ss_pred C-EEEeC---------Cc-ccCCCHHH---HHHHHHHHHhhcC-CEEEEEeCCCCCcH
Confidence 4 22331 21 56666644 4455555666674 33356788777654
No 213
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=20.89 E-value=4.4e+02 Score=26.63 Aligned_cols=93 Identities=17% Similarity=0.192 Sum_probs=57.2
Q ss_pred HHHHHHHHhCCCCEEEecc-CCc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCeee-eecCCCCCcHHHHHhcCCCCCh
Q 014137 108 KEDVDIMANLNFDAYRFSI-SWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEALEKKYNGLLSK 184 (430)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi-~Ws-ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~d~P~~l~~~~gg~~~~ 184 (430)
++.++.|+++|+|-+-++| +-+ ++...- |+.. ..+-..+.++.+++.|+..+ ++|- +++|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l-gR~~--~~~~~~~ai~~lr~~g~~~v~iDli-~GlPg------------ 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFL-GRIH--SQKQIIKAIENAKKAGFENISIDLI-YDTPL------------ 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCC--CHHHHHHHHHHHHHcCCCEEEEEee-cCCCC------------
Confidence 7889999999999666666 443 222221 4322 13557889999999999865 5553 45552
Q ss_pred HhHHHHHHHHHHHHHHhCCcceeEeeccCcch
Q 014137 185 RVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (430)
Q Consensus 185 ~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~ 216 (430)
++.+.|.+-.+.+.+-=-+.|..+...=||+.
T Consensus 162 qt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT 193 (350)
T PRK08446 162 DNKKLLKEELKLAKELPINHLSAYSLTIEENT 193 (350)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeccceecCCC
Confidence 33566666666654432345555555555553
No 214
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=20.86 E-value=8.7e+02 Score=27.47 Aligned_cols=145 Identities=17% Similarity=0.118 Sum_probs=80.6
Q ss_pred cccccCCCCCCChhhhHHHHHHHHHHHHc-CCeeeeecCCCCC-----cHHHHH----hcCCCC----------------
Q 014137 129 SRIFPYGTGKVNWKGVAYYNQLINYLLKR-GITPYANLYHYDL-----PEALEK----KYNGLL---------------- 182 (430)
Q Consensus 129 sri~P~~~g~~n~~~~~~y~~~i~~l~~~-gi~p~vtL~H~d~-----P~~l~~----~~gg~~---------------- 182 (430)
.|+.|...|-+|.+-++-++++.|.+.++ |-..++=|.|-.- +.|... .-++|.
T Consensus 459 g~~~~~~~~~~~d~~i~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p 538 (765)
T PRK08255 459 GRITPGCPGLYNDEQEAAWKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVP 538 (765)
T ss_pred cCCCCCCCccCCHHHHHHHHHHHHHHHhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCCCC
Confidence 45555544778999999999999999999 6999999999322 111100 002221
Q ss_pred -------ChHhHHHHHHHHHHHHHHhC-CcceeEeeccCcchhhccccCCCcC-CCCC--CCcCCCcccCCCCCChHHHH
Q 014137 183 -------SKRVVKDFADYADFCFKTFG-DRVKNWMTFNEPRVVAALGYDNGFF-APGR--CSKAFGNCTVGNSATEPYIV 251 (430)
Q Consensus 183 -------~~~~~~~f~~ya~~~~~~fg-d~v~~w~t~NEp~~~~~~gy~~G~~-~Pg~--~~~~~~~~~~~~~~~~~~~~ 251 (430)
-.++++.|++=|+.+.+ -| |-|. +.+-.||+...| -|-. ... -- |. .
T Consensus 539 ~~mt~~eI~~~i~~f~~aA~~a~~-aGfDgve---------ih~ahGyLl~qFlsp~~N~RtD----~y-GG-------s 596 (765)
T PRK08255 539 REMTRADMDRVRDDFVAAARRAAE-AGFDWLE---------LHCAHGYLLSSFISPLTNQRTD----EY-GG-------S 596 (765)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHH-cCCCEEE---------EecccchHHHHhcCCCCCCCCC----CC-CC-------C
Confidence 12367888876666544 34 3332 345667776543 2321 111 01 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCceEEEEecCcccccCCCCHHHH
Q 014137 252 AHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFVWYEPLTRSKADN 297 (430)
Q Consensus 252 ~hn~llAHa~a~~~~r~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~ 297 (430)
+-|-+.--...++++|+... .+-.||+-++...+.+...+.+|.
T Consensus 597 lenR~r~~~eiv~~ir~~~~--~~~~v~~ri~~~~~~~~g~~~~~~ 640 (765)
T PRK08255 597 LENRLRYPLEVFRAVRAVWP--AEKPMSVRISAHDWVEGGNTPDDA 640 (765)
T ss_pred HHHHhHHHHHHHHHHHHhcC--CCCeeEEEEccccccCCCCCHHHH
Confidence 23444444556777777643 234688888865444433345443
No 215
>PRK06256 biotin synthase; Validated
Probab=20.81 E-value=1.7e+02 Score=29.21 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=39.3
Q ss_pred ccHHHHHHHHhCCCCEEEecc-CCcccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeec
Q 014137 106 RYKEDVDIMANLNFDAYRFSI-SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (430)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi-~Wsri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 165 (430)
.-+|.++.||++|++.+-+++ +=.++++.-... ..++...+.|+.+++.||++..++
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~---~t~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTT---HTYEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCCC---CCHHHHHHHHHHHHHcCCeeccCe
Confidence 457889999999999998877 422333332111 134667789999999999765443
No 216
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=20.65 E-value=3e+02 Score=26.85 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=48.4
Q ss_pred CChhhhHHHHHHHHHHHHcCCe-eee-e---------------cCCCCCcHHHHHhcCCCCCh--HhHHHHHHHHHHHHH
Q 014137 139 VNWKGVAYYNQLINYLLKRGIT-PYA-N---------------LYHYDLPEALEKKYNGLLSK--RVVKDFADYADFCFK 199 (430)
Q Consensus 139 ~n~~~~~~y~~~i~~l~~~gi~-p~v-t---------------L~H~d~P~~l~~~~gg~~~~--~~~~~f~~ya~~~~~ 199 (430)
+|. +.+.++++.++++||+ |++ + +..-++|.|+.+++....+. +..+.-.++|...++
T Consensus 167 fd~---~~~~~~~~~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~~~~~~~~~~~~~gi~~~~~~~~ 243 (272)
T TIGR00676 167 FDN---DDYYRFVDRCRAAGIDVPIIPGIMPITNFKQLLRFAERCGAEIPAWLVKRLEKYDDDPEEVRAVGIEYATDQCE 243 (272)
T ss_pred cCH---HHHHHHHHHHHHcCCCCCEecccCCcCCHHHHHHHHhccCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 554 5578888999999765 221 1 33567899998876554332 334456777777766
Q ss_pred HhCCc-ce--eEeeccCcchh
Q 014137 200 TFGDR-VK--NWMTFNEPRVV 217 (430)
Q Consensus 200 ~fgd~-v~--~w~t~NEp~~~ 217 (430)
++-+. +. |..|+|=+...
T Consensus 244 ~l~~~g~~GiHl~t~n~~~~~ 264 (272)
T TIGR00676 244 DLIAEGVPGIHFYTLNRADAT 264 (272)
T ss_pred HHHHCCCCEEEEcCCCCHHHH
Confidence 65432 43 66678877654
No 217
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=20.61 E-value=3.8e+02 Score=27.25 Aligned_cols=93 Identities=16% Similarity=0.246 Sum_probs=55.6
Q ss_pred HHHHHHHHhCCCCEEEecc-CCc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCee-eeecCCCCCcHHHHHhcCCCCCh
Q 014137 108 KEDVDIMANLNFDAYRFSI-SWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGITP-YANLYHYDLPEALEKKYNGLLSK 184 (430)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi-~Ws-ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p-~vtL~H~d~P~~l~~~~gg~~~~ 184 (430)
+|.+++|+++|++.+-+++ +=+ ++...- |+.. ..+-+.+.++.++++|+.. -++|- +++|.
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~l-~R~~--~~~~~~~ai~~lr~~G~~~v~~dlI-~GlPg------------ 166 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQL-NRTH--TIQDSKEAINLLHKNGIYNISCDFL-YCLPI------------ 166 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCC--CHHHHHHHHHHHHHcCCCcEEEEEe-ecCCC------------
Confidence 7899999999999666655 332 222221 3221 2345788999999999974 45543 45552
Q ss_pred HhHHHHHHHHHHHHHHhCCcceeEeeccCcch
Q 014137 185 RVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (430)
Q Consensus 185 ~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~ 216 (430)
++.+.|.+=.+.+.+.=-+.|..+...=||+.
T Consensus 167 qt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT 198 (353)
T PRK05904 167 LKLKDLDEVFNFILKHKINHISFYSLEIKEGS 198 (353)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeeEecCCC
Confidence 34566666666544322345665555556664
No 218
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=20.56 E-value=2.4e+02 Score=26.81 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=38.3
Q ss_pred ccHHHHHHHHhCCCCEEEeccCCcccccCCC--CCCChhhhHHHHHHHHHHHHcCCeeeee-cCCCCCc
Q 014137 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGT--GKVNWKGVAYYNQLINYLLKRGITPYAN-LYHYDLP 171 (430)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~--g~~n~~~~~~y~~~i~~l~~~gi~p~vt-L~H~d~P 171 (430)
..++=|++++++|.+.++....+ . |.+. ...-....+..+++.+.+.++||...+= +.|++.|
T Consensus 86 ~~~~~i~~a~~lga~~i~~~~g~--~-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~ 151 (258)
T PRK09997 86 GVAAAIRYARALGNKKINCLVGK--T-PAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIP 151 (258)
T ss_pred HHHHHHHHHHHhCCCEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCC
Confidence 35677899999999998864322 1 2210 1111223455677777788999987763 3465444
No 219
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=20.31 E-value=93 Score=30.48 Aligned_cols=22 Identities=45% Similarity=0.838 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHcCCCcEEEecCCC
Q 014137 405 GMYKALMYIKGHYGNPTVILSENGT 429 (430)
Q Consensus 405 GLr~~L~~i~~rY~~ppI~ITENG~ 429 (430)
||--++. +.+|+.| ++|||.|+
T Consensus 185 gl~g~~~--k~~~g~P-~lLTEHGI 206 (268)
T PF11997_consen 185 GLLGALA--KYRYGRP-FLLTEHGI 206 (268)
T ss_pred HHHHHHH--HHHhCCC-EEEecCCc
Confidence 6666653 4467765 99999997
Done!