Query 014141
Match_columns 430
No_of_seqs 148 out of 1654
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 02:14:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.6 2.2E-17 4.8E-22 152.5 -0.9 344 24-410 73-448 (483)
2 KOG2120 SCF ubiquitin ligase, 99.6 2.7E-16 5.9E-21 139.4 1.0 275 20-336 95-392 (419)
3 smart00579 FBD domain in FBox 99.2 1E-10 2.2E-15 85.1 6.8 69 356-425 1-71 (72)
4 PF08387 FBD: FBD; InterPro: 98.8 2.7E-09 5.9E-14 71.3 3.7 43 355-397 9-51 (51)
5 PF12937 F-box-like: F-box-lik 98.8 5.2E-09 1.1E-13 69.0 3.1 35 23-57 1-35 (47)
6 KOG4341 F-box protein containi 98.3 1.6E-08 3.6E-13 94.4 -4.9 245 113-399 126-383 (483)
7 PF00646 F-box: F-box domain; 98.3 1.7E-07 3.7E-12 62.0 1.2 38 23-60 3-40 (48)
8 smart00256 FBOX A Receptor for 98.3 1.1E-06 2.3E-11 55.9 4.0 33 26-58 1-33 (41)
9 PLN03210 Resistant to P. syrin 98.2 3.2E-06 6.9E-11 93.9 7.4 64 276-341 798-879 (1153)
10 PLN00113 leucine-rich repeat r 98.0 5.9E-06 1.3E-10 90.8 5.7 215 162-398 116-342 (968)
11 cd00116 LRR_RI Leucine-rich re 97.9 1E-05 2.2E-10 77.0 5.2 218 162-399 49-289 (319)
12 KOG2120 SCF ubiquitin ligase, 97.8 4.4E-07 9.6E-12 81.5 -5.8 184 164-371 185-374 (419)
13 KOG1909 Ran GTPase-activating 97.8 5.7E-05 1.2E-09 69.6 7.2 197 160-371 88-309 (382)
14 PLN03210 Resistant to P. syrin 97.8 5.2E-05 1.1E-09 84.4 7.7 35 303-341 778-812 (1153)
15 PLN00113 leucine-rich repeat r 97.7 5.3E-05 1.2E-09 83.3 5.6 174 157-340 157-341 (968)
16 cd00116 LRR_RI Leucine-rich re 97.6 7.4E-05 1.6E-09 71.0 5.7 218 162-398 21-260 (319)
17 PF07723 LRR_2: Leucine Rich R 97.3 0.00032 6.9E-09 39.3 3.2 25 165-189 1-26 (26)
18 KOG3665 ZYG-1-like serine/thre 97.3 0.00012 2.6E-09 76.0 2.3 131 161-338 145-282 (699)
19 KOG1947 Leucine rich repeat pr 97.1 5.8E-05 1.3E-09 76.0 -2.0 41 20-60 42-82 (482)
20 KOG3207 Beta-tubulin folding c 97.1 5.8E-05 1.2E-09 71.6 -2.3 174 161-340 143-335 (505)
21 KOG4194 Membrane glycoprotein 97.1 0.00018 3.9E-09 70.7 0.8 209 159-385 216-466 (873)
22 PF14580 LRR_9: Leucine-rich r 97.0 0.00017 3.7E-09 61.6 0.4 122 162-287 17-147 (175)
23 KOG3207 Beta-tubulin folding c 96.8 9.9E-05 2.1E-09 70.0 -3.5 177 161-340 118-310 (505)
24 KOG3665 ZYG-1-like serine/thre 96.7 0.00068 1.5E-08 70.6 1.9 201 164-396 60-283 (699)
25 KOG1909 Ran GTPase-activating 96.7 0.00059 1.3E-08 63.1 0.8 38 162-199 28-68 (382)
26 KOG4194 Membrane glycoprotein 96.6 0.0012 2.6E-08 65.2 2.5 38 161-199 122-159 (873)
27 KOG1947 Leucine rich repeat pr 96.3 0.00034 7.4E-09 70.4 -3.4 63 162-224 241-307 (482)
28 PF14580 LRR_9: Leucine-rich r 95.9 0.0046 9.9E-08 52.9 2.3 129 187-341 17-150 (175)
29 KOG2982 Uncharacterized conser 95.7 0.016 3.4E-07 52.9 4.6 216 162-385 69-307 (418)
30 PRK15387 E3 ubiquitin-protein 95.6 0.018 4E-07 60.6 5.6 29 280-311 342-370 (788)
31 PRK15387 E3 ubiquitin-protein 95.5 0.015 3.2E-07 61.4 4.3 30 280-312 382-411 (788)
32 PLN03215 ascorbic acid mannose 95.2 0.017 3.7E-07 55.2 3.3 38 22-59 3-41 (373)
33 KOG0281 Beta-TrCP (transducin 94.2 0.033 7.1E-07 51.4 2.4 36 20-55 72-111 (499)
34 KOG2997 F-box protein FBX9 [Ge 93.7 0.041 8.9E-07 50.4 2.2 36 21-56 105-145 (366)
35 KOG3864 Uncharacterized conser 93.6 0.0037 7.9E-08 53.7 -4.4 64 161-224 122-188 (221)
36 PRK15386 type III secretion pr 93.5 0.11 2.4E-06 50.4 5.0 29 281-312 157-186 (426)
37 PF13855 LRR_8: Leucine rich r 93.2 0.026 5.7E-07 39.0 0.1 14 186-199 22-35 (61)
38 PF12799 LRR_4: Leucine Rich r 92.7 0.061 1.3E-06 34.4 1.3 35 164-200 1-35 (44)
39 KOG0444 Cytoskeletal regulator 92.3 0.0057 1.2E-07 61.1 -5.7 35 302-341 338-372 (1255)
40 KOG4658 Apoptotic ATPase [Sign 92.1 0.1 2.2E-06 56.3 2.8 17 357-373 714-730 (889)
41 KOG2982 Uncharacterized conser 91.7 0.17 3.6E-06 46.4 3.2 86 251-341 69-156 (418)
42 COG5238 RNA1 Ran GTPase-activa 91.2 0.14 3.1E-06 46.3 2.3 224 99-341 32-282 (388)
43 PF13855 LRR_8: Leucine rich r 91.2 0.22 4.8E-06 34.2 2.8 34 189-223 1-36 (61)
44 KOG1644 U2-associated snRNP A' 90.8 0.56 1.2E-05 40.7 5.4 82 159-243 59-150 (233)
45 smart00367 LRR_CC Leucine-rich 90.4 0.14 3E-06 28.5 1.0 17 188-204 1-17 (26)
46 PRK15370 E3 ubiquitin-protein 90.0 0.16 3.4E-06 53.9 1.7 30 280-312 325-355 (754)
47 PRK15370 E3 ubiquitin-protein 89.7 0.15 3.2E-06 54.1 1.3 53 164-222 241-293 (754)
48 PRK15386 type III secretion pr 89.4 0.55 1.2E-05 45.7 4.8 113 185-312 48-165 (426)
49 PF13013 F-box-like_2: F-box-l 87.7 0.65 1.4E-05 36.2 3.3 30 22-51 21-50 (109)
50 KOG2123 Uncharacterized conser 87.6 0.048 1.1E-06 49.3 -3.4 58 232-291 40-99 (388)
51 KOG0618 Serine/threonine phosp 86.0 0.19 4.1E-06 52.9 -0.6 166 156-340 106-273 (1081)
52 KOG2123 Uncharacterized conser 85.3 0.017 3.7E-07 52.1 -7.4 105 163-287 18-124 (388)
53 KOG2739 Leucine-rich acidic nu 84.8 0.2 4.3E-06 45.0 -1.0 65 181-246 35-104 (260)
54 KOG4658 Apoptotic ATPase [Sign 84.3 0.28 6E-06 53.0 -0.4 63 161-223 542-606 (889)
55 KOG0617 Ras suppressor protein 83.9 0.026 5.7E-07 47.3 -6.4 42 298-341 142-183 (264)
56 KOG0274 Cdc4 and related F-box 83.9 0.5 1.1E-05 48.1 1.3 39 18-56 103-141 (537)
57 KOG0618 Serine/threonine phosp 83.3 0.2 4.2E-06 52.8 -1.9 176 155-341 301-510 (1081)
58 KOG0444 Cytoskeletal regulator 82.7 0.22 4.7E-06 50.3 -1.8 59 277-341 194-255 (1255)
59 KOG3864 Uncharacterized conser 80.1 0.56 1.2E-05 40.6 0.1 43 185-227 121-166 (221)
60 COG5238 RNA1 Ran GTPase-activa 79.9 6.8 0.00015 35.8 6.7 68 329-399 155-225 (388)
61 KOG0472 Leucine-rich repeat pr 79.7 0.29 6.3E-06 46.8 -1.9 37 302-343 504-540 (565)
62 COG4886 Leucine-rich repeat (L 79.4 0.76 1.6E-05 45.0 0.7 140 165-312 141-286 (394)
63 KOG2739 Leucine-rich acidic nu 77.8 0.8 1.7E-05 41.2 0.3 82 161-242 62-152 (260)
64 KOG0617 Ras suppressor protein 77.7 0.082 1.8E-06 44.4 -5.5 34 276-312 146-182 (264)
65 PF12799 LRR_4: Leucine Rich r 77.6 1.7 3.6E-05 27.7 1.7 34 189-223 1-35 (44)
66 PF08387 FBD: FBD; InterPro: 77.6 3.9 8.5E-05 26.9 3.5 38 302-339 13-50 (51)
67 PLN03150 hypothetical protein; 77.0 1.5 3.3E-05 45.8 2.1 78 166-244 420-501 (623)
68 KOG1644 U2-associated snRNP A' 76.1 3.5 7.5E-05 36.0 3.7 93 276-376 60-156 (233)
69 PF13516 LRR_6: Leucine Rich r 76.0 1.1 2.5E-05 24.1 0.5 20 164-183 2-21 (24)
70 KOG1259 Nischarin, modulator o 73.5 2.2 4.7E-05 39.5 1.9 58 277-340 304-361 (490)
71 KOG4237 Extracellular matrix p 72.3 5 0.00011 38.6 4.0 94 232-330 273-374 (498)
72 KOG1259 Nischarin, modulator o 72.0 7 0.00015 36.2 4.8 97 233-341 284-384 (490)
73 smart00579 FBD domain in FBox 64.6 11 0.00024 26.7 3.7 41 302-342 4-44 (72)
74 PF13504 LRR_7: Leucine rich r 64.1 2.9 6.3E-05 20.5 0.4 12 189-200 1-12 (17)
75 PF09372 PRANC: PRANC domain; 62.6 6.6 0.00014 29.9 2.4 25 21-45 70-94 (97)
76 COG4886 Leucine-rich repeat (L 48.8 4.7 0.0001 39.4 -0.6 165 161-340 113-286 (394)
77 KOG1859 Leucine-rich repeat pr 42.6 3.3 7.3E-05 43.0 -2.7 117 157-285 102-275 (1096)
78 PF00560 LRR_1: Leucine Rich R 37.2 29 0.00062 18.1 1.6 11 281-291 1-11 (22)
79 PLN03150 hypothetical protein; 35.1 20 0.00043 37.6 1.4 68 155-223 433-501 (623)
80 KOG3926 F-box proteins [Amino 31.2 39 0.00084 30.8 2.4 49 20-68 199-254 (332)
81 KOG0531 Protein phosphatase 1, 30.2 18 0.00039 35.7 0.2 36 162-199 93-128 (414)
82 KOG4408 Putative Mg2+ and Co2+ 25.7 14 0.00031 34.5 -1.3 37 23-59 8-44 (386)
83 smart00368 LRR_RI Leucine rich 24.1 39 0.00085 18.8 0.8 20 164-183 2-21 (28)
84 KOG2502 Tub family proteins [G 23.3 60 0.0013 30.8 2.2 38 21-58 43-88 (355)
85 KOG3007 Mu-crystallin [Amino a 22.4 2.9E+02 0.0062 25.5 6.1 48 378-429 152-199 (333)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.63 E-value=2.2e-17 Score=152.50 Aligned_cols=344 Identities=17% Similarity=0.228 Sum_probs=211.1
Q ss_pred CCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhh------cccCceeeecCCccccCCCCchhHhHHHHHHHHHHhhcCCC
Q 014141 24 SRFPDDILIHIISGLTLKEAARTSVLSSRWKYL------WTFTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRGS 97 (430)
Q Consensus 24 s~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~ 97 (430)
-.||.|++.+|||+|.++...|++++|+-|..+ |..+...+|..++ + .-|-..+.++.|.
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv---------~-----g~VV~~~~~Rcgg 138 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDV---------D-----GGVVENMISRCGG 138 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcC---------C-----CcceehHhhhhcc
Confidence 359999999999999999999999999999864 7777766664441 1 1222233344456
Q ss_pred ceeEEEEEEecCCCCCccHhHHHHHH--hhcCcEEEEEEcCCCCCCCc-eeeccccccccCCCCCCCCCCCCceEEEeeE
Q 014141 98 RINQFRICFRLDAKHKCNITNWVNTA--IAKNVRNFELDLSPGTYDNY-YEIPQECYKNLQSGCGLSGIKSLRSLTLCAV 174 (430)
Q Consensus 98 ~l~~l~l~~~~~~~~~~~v~~wl~~~--~~~~v~~L~l~~~~~~~~~~-~~lp~~~~~~l~~p~~~~~~~~L~~L~L~~~ 174 (430)
++++++++......+. . +..+ ..+++++|.+..+...++.. +.+. ..|+.|++|.|..|
T Consensus 139 ~lk~LSlrG~r~v~~s----s-lrt~~~~CpnIehL~l~gc~~iTd~s~~sla-------------~~C~~l~~l~L~~c 200 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDS----S-LRTFASNCPNIEHLALYGCKKITDSSLLSLA-------------RYCRKLRHLNLHSC 200 (483)
T ss_pred ccccccccccccCCcc----h-hhHHhhhCCchhhhhhhcceeccHHHHHHHH-------------Hhcchhhhhhhccc
Confidence 6899998775332111 1 2222 23477777665554332211 2221 46688888888885
Q ss_pred -EEcchhHHHHhhcCCcccceeeccCCCCceeeEe---cCCCCcceEEEeecCCcc-----EEEEeCCceeEEEEeccee
Q 014141 175 -NVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV---GSSIPLKCLDIQFCYSIK-----EIEISAPNLLSFKYIGQDI 245 (430)
Q Consensus 175 -~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~---~~~~~L~~L~l~~c~~l~-----~i~i~~P~L~~L~~~~~~~ 245 (430)
.+++..+..+..+||+|+.|.+..|+.+..=.+. ..+..++.+...+|...+ .+.-..+.+.++++..+..
T Consensus 201 ~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~ 280 (483)
T KOG4341|consen 201 SSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ 280 (483)
T ss_pred chhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc
Confidence 5666777778888888888888888766541111 234556677666775321 2233344555555322210
Q ss_pred --e----eecCCCCCceEEEEEeecCcchhhHHH-HhhccCCCceEEEEecceeeecccc---cCCCCccceEEEEEeec
Q 014141 246 --N----LHVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYLPQLKTLELDGCNEVFAQFS---QREFPKLMNLNISFTAA 315 (430)
Q Consensus 246 --~----~~~~~~~~L~~~~i~~~~~~~~~~~~~-~l~~~~~~l~~L~l~~~~~~~~~~l---~~~~~~L~~L~l~~~~~ 315 (430)
. ..--.+..|+.+....... ..+... .+..++++|+.|.+..+.+.....+ -...+.|..|+++-+..
T Consensus 281 lTD~~~~~i~~~c~~lq~l~~s~~t~--~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 281 LTDEDLWLIACGCHALQVLCYSSCTD--ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL 358 (483)
T ss_pred ccchHHHHHhhhhhHhhhhcccCCCC--CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence 0 0001233333333322111 112222 7888999999999988875443332 33378888888866543
Q ss_pred CccchhhHHHHHhhCCCceEEEEEEeccccccccCcccc---ccCcCCCccEEEEeeeecChh-hHHHHHHHHhcccccc
Q 014141 316 NQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQI---SKHSHQHLKLVELQGFNGREI-DFELAFYVFENATMLE 391 (430)
Q Consensus 316 ~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~---~~~~~~~L~~v~i~~~~g~~~-e~~l~~~ll~~a~~Le 391 (430)
. ....+..+-.+||.|++|++.-+ ....++|... ..|.+.+|+.+++.+.....+ .++ .+.+++.||
T Consensus 359 ~--~d~tL~sls~~C~~lr~lslshc---e~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le----~l~~c~~Le 429 (483)
T KOG4341|consen 359 I--TDGTLASLSRNCPRLRVLSLSHC---ELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE----HLSICRNLE 429 (483)
T ss_pred e--hhhhHhhhccCCchhccCChhhh---hhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH----HHhhCcccc
Confidence 2 33368899999999999999632 1223343322 268899999999999987743 333 345889999
Q ss_pred cEEEecCCCchhhHHHHHH
Q 014141 392 KMIIKPSGSRKRTTLKNST 410 (430)
Q Consensus 392 ~m~i~~~~~~~~~~~~~~~ 410 (430)
++.++...+...+.+...+
T Consensus 430 ri~l~~~q~vtk~~i~~~~ 448 (483)
T KOG4341|consen 430 RIELIDCQDVTKEAISRFA 448 (483)
T ss_pred eeeeechhhhhhhhhHHHH
Confidence 9887766655554444333
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.7e-16 Score=139.38 Aligned_cols=275 Identities=19% Similarity=0.260 Sum_probs=153.3
Q ss_pred cccCCCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhh------cccCceeeecCCccccCCCCchhHhHHHHHHHHHHhh
Q 014141 20 EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYL------WTFTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLEL 93 (430)
Q Consensus 20 ~d~is~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 93 (430)
+-.|+.|||||+..|||.|+.+|+.+.+.|||||+++ |.. +++... .+. .+....++.
T Consensus 95 gv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r-~i~-------p~~l~~l~~----- 158 (419)
T KOG2120|consen 95 GVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGR-NIH-------PDVLGRLLS----- 158 (419)
T ss_pred CCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCC-ccC-------hhHHHHHHh-----
Confidence 3448999999999999999999999999999999975 554 444444 222 122222221
Q ss_pred cCCCceeEEEEEEecCCCCCccHhHHHHHHhhcCcEEEEEEcCCCCCCCceeeccccccccCCCCCCCCCCCCceEEEee
Q 014141 94 HRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCA 173 (430)
Q Consensus 94 ~~~~~l~~l~l~~~~~~~~~~~v~~wl~~~~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~~p~~~~~~~~L~~L~L~~ 173 (430)
+| |.-|++.=.+. +...+..-. ...+.+++.+++....-..+.-. .-+.+|..||.|+|.+
T Consensus 159 -rg--V~v~Rlar~~~--~~prlae~~-~~frsRlq~lDLS~s~it~stl~-------------~iLs~C~kLk~lSlEg 219 (419)
T KOG2120|consen 159 -RG--VIVFRLARSFM--DQPRLAEHF-SPFRSRLQHLDLSNSVITVSTLH-------------GILSQCSKLKNLSLEG 219 (419)
T ss_pred -CC--eEEEEcchhhh--cCchhhhhh-hhhhhhhHHhhcchhheeHHHHH-------------HHHHHHHhhhhccccc
Confidence 12 55555421111 111121111 11223567676654421111000 0113678899999999
Q ss_pred EEEcchhHHHHhhcCCcccceeeccCCCCceeeE---ecCCCCcceEEEeecCCccEE-----EEeCCceeEEEEeccee
Q 014141 174 VNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV---VGSSIPLKCLDIQFCYSIKEI-----EISAPNLLSFKYIGQDI 245 (430)
Q Consensus 174 ~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i---~~~~~~L~~L~l~~c~~l~~i-----~i~~P~L~~L~~~~~~~ 245 (430)
.+++|+... -++.-.+|++|+|..|.|++.-.+ -.+|.+|..|.+.+|....+. .-..|.|..|++.|+.-
T Consensus 220 ~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rr 298 (419)
T KOG2120|consen 220 LRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRR 298 (419)
T ss_pred cccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHh
Confidence 888766433 356677899999999988865322 247788999999988743331 22357888888887633
Q ss_pred ee-------ecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccc--cCCCCccceEEEEEeecC
Q 014141 246 NL-------HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFS--QREFPKLMNLNISFTAAN 316 (430)
Q Consensus 246 ~~-------~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l--~~~~~~L~~L~l~~~~~~ 316 (430)
.+ ....+|++.++.++.+.... ...+..+..++-|++|.++.|..+....+ ....|.|++|++..+.
T Consensus 299 nl~~sh~~tL~~rcp~l~~LDLSD~v~l~--~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v-- 374 (419)
T KOG2120|consen 299 NLQKSHLSTLVRRCPNLVHLDLSDSVMLK--NDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV-- 374 (419)
T ss_pred hhhhhHHHHHHHhCCceeeeccccccccC--chHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc--
Confidence 21 12346666666655332221 12224445566666666655541111111 1115566666654431
Q ss_pred ccchhhHHHHHhhCCCceEE
Q 014141 317 QETLLGLSFIMKACPFLEKL 336 (430)
Q Consensus 317 ~~~~~~l~~lL~~~p~L~~L 336 (430)
....+.-+.+.||+|+.-
T Consensus 375 --sdt~mel~~e~~~~lkin 392 (419)
T KOG2120|consen 375 --SDTTMELLKEMLSHLKIN 392 (419)
T ss_pred --CchHHHHHHHhCcccccc
Confidence 112244455666665443
No 3
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=99.16 E-value=1e-10 Score=85.05 Aligned_cols=69 Identities=23% Similarity=0.354 Sum_probs=59.2
Q ss_pred cCcCCCccEEEEeeeecChhhHHHHHHHHhcccccccEEEecCCCchh--hHHHHHHhhccccCCCccEEEE
Q 014141 356 KHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSGSRKR--TTLKNSTNMLKAKLPRGVKLTV 425 (430)
Q Consensus 356 ~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~~~~~~~~--~~~~~~~~~~~~~~s~~~~i~~ 425 (430)
.|..++|+.|+|.||.|..+|+++++|+++||+.||+|+|.......+ ..+...+..+ +|+|+.|+|.|
T Consensus 1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~~i~~~L~~~-~~aS~~c~i~~ 71 (72)
T smart00579 1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDEKLEILKELLSL-PRASSSCQVQF 71 (72)
T ss_pred CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccHHHHHHHHHHhC-cCCCCceEEEe
Confidence 367789999999999999999999999999999999999998764432 3344666678 99999999987
No 4
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=98.85 E-value=2.7e-09 Score=71.25 Aligned_cols=43 Identities=44% Similarity=0.705 Sum_probs=40.8
Q ss_pred ccCcCCCccEEEEeeeecChhhHHHHHHHHhcccccccEEEec
Q 014141 355 SKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKP 397 (430)
Q Consensus 355 ~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~~ 397 (430)
+.|..+||+.|+|.||.|..+|+++++|+++||++||+|+|..
T Consensus 9 p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~~ 51 (51)
T PF08387_consen 9 PECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTISF 51 (51)
T ss_pred ccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEEC
Confidence 4899999999999999999999999999999999999999963
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.77 E-value=5.2e-09 Score=68.96 Aligned_cols=35 Identities=34% Similarity=0.640 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhhc
Q 014141 23 FSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLW 57 (430)
Q Consensus 23 is~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~lw 57 (430)
|+.||+||+.+||++|+.+|.++++.|||+|+.+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999864
No 6
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.34 E-value=1.6e-08 Score=94.41 Aligned_cols=245 Identities=15% Similarity=0.153 Sum_probs=124.9
Q ss_pred CccHhHHHHHHhhcCcEEEEEEcCCCCCCCceeeccccccccCCCCCCCCCCCCceEEEeeE-EEcchhHHHHhhcCCcc
Q 014141 113 KCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAV-NVTGEVVEFFIHNCPLL 191 (430)
Q Consensus 113 ~~~v~~wl~~~~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~~p~~~~~~~~L~~L~L~~~-~~~~~~l~~ll~~cp~L 191 (430)
.+.|...++.+. ..+++|.+..+........ - ....++|++++|.+.+| .+++..+..+-..|+.|
T Consensus 126 g~VV~~~~~Rcg-g~lk~LSlrG~r~v~~ssl--r----------t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l 192 (483)
T KOG4341|consen 126 GGVVENMISRCG-GFLKELSLRGCRAVGDSSL--R----------TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKL 192 (483)
T ss_pred CcceehHhhhhc-cccccccccccccCCcchh--h----------HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchh
Confidence 444555554444 3577777766644432110 0 01246788888888888 56677788877888888
Q ss_pred cceeeccCCCCceee---EecCCCCcceEEEeecCCccE-----EEEeCCceeEEEEecceeeeecCCCCCceEEEEEee
Q 014141 192 ENLRITQSPDLLSLK---VVGSSIPLKCLDIQFCYSIKE-----IEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVT 263 (430)
Q Consensus 192 e~L~L~~~~~~~~~~---i~~~~~~L~~L~l~~c~~l~~-----i~i~~P~L~~L~~~~~~~~~~~~~~~~L~~~~i~~~ 263 (430)
+.|.+..|..+++.. +...|++|+.|.+++|+.... +.-.+-+++.+..+|+.-.
T Consensus 193 ~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~----------------- 255 (483)
T KOG4341|consen 193 RHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL----------------- 255 (483)
T ss_pred hhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc-----------------
Confidence 888888888776532 334678888888888874333 1111222333333332110
Q ss_pred cCcchhhHHHHhhccCCCceEEEEecceeeeccc---ccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141 264 PMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF---SQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI 340 (430)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~---l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~ 340 (430)
..+-+......+.-+..+++..+.++.+.. +...+..|..|..+. +.......+..+-++|++|+.|.++.
T Consensus 256 ----~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~--~t~~~d~~l~aLg~~~~~L~~l~l~~ 329 (483)
T KOG4341|consen 256 ----ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSS--CTDITDEVLWALGQHCHNLQVLELSG 329 (483)
T ss_pred ----cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccC--CCCCchHHHHHHhcCCCceEEEeccc
Confidence 000011122222333333332332222111 111122233333322 33334445666777778888877766
Q ss_pred eccccccccCccccccCcCCCccEEEEeeee-cChhhHHHHHHHHhcccccccEEEecCC
Q 014141 341 WNNGRRIGKKRHQISKHSHQHLKLVELQGFN-GREIDFELAFYVFENATMLEKMIIKPSG 399 (430)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~-g~~~e~~l~~~ll~~a~~Le~m~i~~~~ 399 (430)
+.. ..+.+.....-.+.+|+.+.+.+.. |.+. . +..+..||+.|+++.++...
T Consensus 330 c~~---fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--t-L~sls~~C~~lr~lslshce 383 (483)
T KOG4341|consen 330 CQQ---FSDRGFTMLGRNCPHLERLDLEECGLITDG--T-LASLSRNCPRLRVLSLSHCE 383 (483)
T ss_pred cch---hhhhhhhhhhcCChhhhhhcccccceehhh--h-HhhhccCCchhccCChhhhh
Confidence 532 2333332223445567766666543 4443 2 22355677777777776443
No 7
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.33 E-value=1.7e-07 Score=62.01 Aligned_cols=38 Identities=39% Similarity=0.593 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhhcccC
Q 014141 23 FSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFT 60 (430)
Q Consensus 23 is~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~lw~~~ 60 (430)
|++||+|++.+|+++|+.+|.++++.|||+|+.+....
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence 67899999999999999999999999999999976543
No 8
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.28 E-value=1.1e-06 Score=55.91 Aligned_cols=33 Identities=39% Similarity=0.638 Sum_probs=31.3
Q ss_pred CCHHHHHHHHhcCChHHHHHHHHhhhhhhhhcc
Q 014141 26 FPDDILIHIISGLTLKEAARTSVLSSRWKYLWT 58 (430)
Q Consensus 26 LPdeiL~~Ils~L~~~d~~rts~vSrrWr~lw~ 58 (430)
||+|++.+|+++|+.+|..+++.|||+|+.+..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999754
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.17 E-value=3.2e-06 Score=93.88 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=31.6
Q ss_pred hccCCCceEEEEecceeeecccccCC--CCccceEEEEEeecC----------------ccchhhHHHHHhhCCCceEEE
Q 014141 276 VSYLPQLKTLELDGCNEVFAQFSQRE--FPKLMNLNISFTAAN----------------QETLLGLSFIMKACPFLEKLV 337 (430)
Q Consensus 276 ~~~~~~l~~L~l~~~~~~~~~~l~~~--~~~L~~L~l~~~~~~----------------~~~~~~l~~lL~~~p~L~~L~ 337 (430)
+.++++|+.|.+..+..+. .+|.. +++|++|+++.+... ...+..++.-+..+++|+.|.
T Consensus 798 i~~L~~L~~L~Ls~C~~L~--~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~ 875 (1153)
T PLN03210 798 IQNLHKLEHLEIENCINLE--TLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLD 875 (1153)
T ss_pred hhCCCCCCEEECCCCCCcC--eeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEE
Confidence 4567778888887654221 12221 444444444322100 012223444556677777777
Q ss_pred EEEe
Q 014141 338 LQIW 341 (430)
Q Consensus 338 l~~~ 341 (430)
+..+
T Consensus 876 L~~C 879 (1153)
T PLN03210 876 MNGC 879 (1153)
T ss_pred CCCC
Confidence 7553
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.02 E-value=5.9e-06 Score=90.83 Aligned_cols=215 Identities=18% Similarity=0.088 Sum_probs=110.1
Q ss_pred CCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee-EecCCCCcceEEEeecCCccEE---EEeCCceeE
Q 014141 162 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFCYSIKEI---EISAPNLLS 237 (430)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~-i~~~~~~L~~L~l~~c~~l~~i---~i~~P~L~~ 237 (430)
++++|++|+|++..+.+.. . ....++|+.|.|.++.....+. .-..+++|+.|++.++.-...+ --..++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~-p--~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSI-P--RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred cCCCCCEEECcCCcccccc-C--ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 5667777777666554321 0 1235667777776664321111 1123466777777665421111 123466777
Q ss_pred EEEeccee----eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCC---CCccceEEE
Q 014141 238 FKYIGQDI----NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLMNLNI 310 (430)
Q Consensus 238 L~~~~~~~----~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~---~~~L~~L~l 310 (430)
|++.++.. +-.++.+++|+.+.+..+..... +..-+..+++|+.|++..+. +. ..+|.. +++|++|++
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~L~~n~-l~-~~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE---IPYEIGGLTSLNHLDLVYNN-LT-GPIPSSLGNLKNLQYLFL 267 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCc---CChhHhcCCCCCEEECcCce-ec-cccChhHhCCCCCCEEEC
Confidence 77765532 22345566677776664433211 11334567777777776665 22 122322 556666666
Q ss_pred EEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCccccc-cCcCCCccEEEEeeeecChhhHHHHHHHHhcccc
Q 014141 311 SFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KHSHQHLKLVELQGFNGREIDFELAFYVFENATM 389 (430)
Q Consensus 311 ~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~ 389 (430)
....-. ..+..-+...++|++|++....- .+..+. -..+.+|+.+.+.+-.-.. .....+.+.+.
T Consensus 268 ~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l------~~~~p~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~ 333 (968)
T PLN00113 268 YQNKLS----GPIPPSIFSLQKLISLDLSDNSL------SGEIPELVIQLQNLEILHLFSNNFTG----KIPVALTSLPR 333 (968)
T ss_pred cCCeee----ccCchhHhhccCcCEEECcCCee------ccCCChhHcCCCCCcEEECCCCccCC----cCChhHhcCCC
Confidence 432111 11233455677788887753211 111122 2345778888886532111 11123457788
Q ss_pred cccEEEecC
Q 014141 390 LEKMIIKPS 398 (430)
Q Consensus 390 Le~m~i~~~ 398 (430)
|+.+.+...
T Consensus 334 L~~L~L~~n 342 (968)
T PLN00113 334 LQVLQLWSN 342 (968)
T ss_pred CCEEECcCC
Confidence 999888654
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.95 E-value=1e-05 Score=76.96 Aligned_cols=218 Identities=15% Similarity=0.030 Sum_probs=101.0
Q ss_pred CCCCCceEEEeeEEEc--chh---HHHHhhcCCcccceeeccCCCCcee-----eEecCCCCcceEEEeecCCccEEEEe
Q 014141 162 GIKSLRSLTLCAVNVT--GEV---VEFFIHNCPLLENLRITQSPDLLSL-----KVVGSSIPLKCLDIQFCYSIKEIEIS 231 (430)
Q Consensus 162 ~~~~L~~L~L~~~~~~--~~~---l~~ll~~cp~Le~L~L~~~~~~~~~-----~i~~~~~~L~~L~l~~c~~l~~i~i~ 231 (430)
.+++|++|.+.+..+. ... +...+..++.|+.|.|.+|...... .+... ++|++|.+.+|.. ..-...
T Consensus 49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~-~~~~~~ 126 (319)
T cd00116 49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGL-GDRGLR 126 (319)
T ss_pred hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCcc-chHHHH
Confidence 5567777777777655 222 2334455777777777776532110 01111 3366666655541 100000
Q ss_pred CCceeEEEEecceeeeecCCC-CCceEEEEEeecCcc-hhhHHHHhhccCCCceEEEEecceeeeccc---ccC---CCC
Q 014141 232 APNLLSFKYIGQDINLHVGSL-PQLVDVVFHVTPMVQ-KMHCIGSIVSYLPQLKTLELDGCNEVFAQF---SQR---EFP 303 (430)
Q Consensus 232 ~P~L~~L~~~~~~~~~~~~~~-~~L~~~~i~~~~~~~-~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~---l~~---~~~ 303 (430)
...-.+... ++|+++.+..+.... ....+...+..+++|+.|++..+. +.... ++. .++
T Consensus 127 ------------~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~ 193 (319)
T cd00116 127 ------------LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANC 193 (319)
T ss_pred ------------HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCC
Confidence 000011223 455555555433221 111222445556667777776654 32111 111 145
Q ss_pred ccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCcccc--ccC--cCCCccEEEEeeeecC-hhhHH
Q 014141 304 KLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQI--SKH--SHQHLKLVELQGFNGR-EIDFE 378 (430)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~--~~~--~~~~L~~v~i~~~~g~-~~e~~ 378 (430)
+|++|++..+.........+...+..+|+|+.|++....- .+.+... ..+ ....|+.+.+.+..-+ .....
T Consensus 194 ~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l----~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 269 (319)
T cd00116 194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL----TDAGAAALASALLSPNISLLTLSLSCNDITDDGAKD 269 (319)
T ss_pred CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC----chHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHH
Confidence 7777777554322233334555666777777777754311 1111100 011 2356777777665422 22233
Q ss_pred HHHHHHhcccccccEEEecCC
Q 014141 379 LAFYVFENATMLEKMIIKPSG 399 (430)
Q Consensus 379 l~~~ll~~a~~Le~m~i~~~~ 399 (430)
+++. +.+.+.|+.+.+....
T Consensus 270 l~~~-~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 270 LAEV-LAEKESLLELDLRGNK 289 (319)
T ss_pred HHHH-HhcCCCccEEECCCCC
Confidence 4443 3333677776665543
No 12
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=4.4e-07 Score=81.50 Aligned_cols=184 Identities=16% Similarity=0.193 Sum_probs=104.6
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe-cCCCCcceEEEeecCCccEEEEeCCceeEEEEec
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV-GSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIG 242 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~-~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~ 242 (430)
.+|++|+|+...++...+..+++.|..|+.|.|.+..--+.+.+. +....|+.|.+..|.++.+...
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~------------ 252 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENAL------------ 252 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHH------------
Confidence 579999999999999999999999999999999998654443222 2337889999988875443221
Q ss_pred ceeeeecCCCCCceEEEEEeecCcchhhHHH-HhhccCCCceEEEEeccee-ee---cccccCCCCccceEEEEEeecCc
Q 014141 243 QDINLHVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYLPQLKTLELDGCNE-VF---AQFSQREFPKLMNLNISFTAANQ 317 (430)
Q Consensus 243 ~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~-~l~~~~~~l~~L~l~~~~~-~~---~~~l~~~~~~L~~L~l~~~~~~~ 317 (430)
...+.++..|.++++..+...... +. -+.+.-+++..|.+.++.. +. ...+...+|||.+|+|+-+..-.
T Consensus 253 ---~ll~~scs~L~~LNlsWc~l~~~~--Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 253 ---QLLLSSCSRLDELNLSWCFLFTEK--VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred ---HHHHHhhhhHhhcCchHhhccchh--hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence 122334444555554432211100 11 1122333556666655431 11 11223337777777775543221
Q ss_pred cchhhHHHHHhhCCCceEEEEEEeccccccccCccccccCcCCCccEEEEeeee
Q 014141 318 ETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFN 371 (430)
Q Consensus 318 ~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~ 371 (430)
. ++...+..+|.|++|.+.-+.. -.......-...++|..+.+.|+-
T Consensus 328 ~---~~~~~~~kf~~L~~lSlsRCY~----i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 328 N---DCFQEFFKFNYLQHLSLSRCYD----IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred c---hHHHHHHhcchheeeehhhhcC----CChHHeeeeccCcceEEEEecccc
Confidence 1 4556677778888887754321 111111112344667777776653
No 13
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.81 E-value=5.7e-05 Score=69.64 Aligned_cols=197 Identities=19% Similarity=0.218 Sum_probs=121.3
Q ss_pred CCCCCCCceEEEeeEEEcc---hhHHHHhhcCCcccceeeccCCCCcee---eEecCCCCcceEEEeecCCccEEEEeCC
Q 014141 160 LSGIKSLRSLTLCAVNVTG---EVVEFFIHNCPLLENLRITQSPDLLSL---KVVGSSIPLKCLDIQFCYSIKEIEISAP 233 (430)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~---~~l~~ll~~cp~Le~L~L~~~~~~~~~---~i~~~~~~L~~L~l~~c~~l~~i~i~~P 233 (430)
+.++|+|++|+|+...|.. ..++.++++|..|++|.|.+| |+... .+. .-|.+|.. .+-.-+.|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~---~al~~l~~------~kk~~~~~ 157 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLG---RALFELAV------NKKAASKP 157 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHH---HHHHHHHH------HhccCCCc
Confidence 3467899999999998865 458899999999999999999 33211 111 11222221 11123567
Q ss_pred ceeEEEEeccee--------eeecCCCCCceEEEEEeecCcch-hhHHHHhhccCCCceEEEEecceeee------cccc
Q 014141 234 NLLSFKYIGQDI--------NLHVGSLPQLVDVVFHVTPMVQK-MHCIGSIVSYLPQLKTLELDGCNEVF------AQFS 298 (430)
Q Consensus 234 ~L~~L~~~~~~~--------~~~~~~~~~L~~~~i~~~~~~~~-~~~~~~l~~~~~~l~~L~l~~~~~~~------~~~l 298 (430)
.|+.+.+..... .-.+...|.|.++++..+..... ..-+..-+..|++|+.|+|+.+. .. ....
T Consensus 158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~Laka 236 (382)
T KOG1909|consen 158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKA 236 (382)
T ss_pred ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHH
Confidence 777777654422 11234567888888886654321 11122556889999999998876 22 1122
Q ss_pred cCCCCccceEEEEEeecCccchhhHH-HHHhhCCCceEEEEEEeccccccccCccccc-cC--cCCCccEEEEeeee
Q 014141 299 QREFPKLMNLNISFTAANQETLLGLS-FIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KH--SHQHLKLVELQGFN 371 (430)
Q Consensus 299 ~~~~~~L~~L~l~~~~~~~~~~~~l~-~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~-~~--~~~~L~~v~i~~~~ 371 (430)
.+.+++|+.|.++.+.-.......+. .+-+..|+|+.|.+.+..- ..++-... .| ..++|+.+.+.|-+
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI----t~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI----TRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh----HHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 23378899999988765544444444 4556789999999976421 11111110 11 25678888888754
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.77 E-value=5.2e-05 Score=84.39 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=18.5
Q ss_pred CccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEe
Q 014141 303 PKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW 341 (430)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~ 341 (430)
++|+.|+|..+. ....++.-+.++++|+.|+|..+
T Consensus 778 ~sL~~L~Ls~n~----~l~~lP~si~~L~~L~~L~Ls~C 812 (1153)
T PLN03210 778 PSLTRLFLSDIP----SLVELPSSIQNLHKLEHLEIENC 812 (1153)
T ss_pred ccchheeCCCCC----CccccChhhhCCCCCCEEECCCC
Confidence 456666553321 11123344667777777777543
No 15
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.65 E-value=5.3e-05 Score=83.33 Aligned_cols=174 Identities=17% Similarity=0.162 Sum_probs=73.4
Q ss_pred CCCCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee-EecCCCCcceEEEeecCCccEEE---EeC
Q 014141 157 GCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFCYSIKEIE---ISA 232 (430)
Q Consensus 157 p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~-i~~~~~~L~~L~l~~c~~l~~i~---i~~ 232 (430)
|..+.++++|++|+|.++.+... +..-+..+++|+.|.|.+|.....+. .-..+++|+.|.+.++.-...+. -..
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 235 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235 (968)
T ss_pred ChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC
Confidence 33444555566666655544321 11223455556666665554221110 00123555555555543111110 123
Q ss_pred CceeEEEEeccee----eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccC---CCCcc
Q 014141 233 PNLLSFKYIGQDI----NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR---EFPKL 305 (430)
Q Consensus 233 P~L~~L~~~~~~~----~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~---~~~~L 305 (430)
++|++|++.++.. +..++++++|+.+.+..+..... +..-+..+++|+.|++..+. +. ..+|. .+++|
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~Ls~n~-l~-~~~p~~~~~l~~L 310 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP---IPPSIFSLQKLISLDLSDNS-LS-GEIPELVIQLQNL 310 (968)
T ss_pred CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc---CchhHhhccCcCEEECcCCe-ec-cCCChhHcCCCCC
Confidence 5566666554422 22344555666665553322111 11222345556666665443 21 11221 14455
Q ss_pred ceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141 306 MNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI 340 (430)
Q Consensus 306 ~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~ 340 (430)
+.|++...... ..+...+..+|+|+.|.+..
T Consensus 311 ~~L~l~~n~~~----~~~~~~~~~l~~L~~L~L~~ 341 (968)
T PLN00113 311 EILHLFSNNFT----GKIPVALTSLPRLQVLQLWS 341 (968)
T ss_pred cEEECCCCccC----CcCChhHhcCCCCCEEECcC
Confidence 55554322110 01223345556666666643
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.64 E-value=7.4e-05 Score=70.98 Aligned_cols=218 Identities=17% Similarity=0.116 Sum_probs=118.2
Q ss_pred CCCCCceEEEeeEEEcchh---HHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEEeCCceeEE
Q 014141 162 GIKSLRSLTLCAVNVTGEV---VEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSF 238 (430)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L 238 (430)
.+++|+.|.+.++.+++.. +...+...|.|+.|.+.++..-. +. ..+..+ ...+ ...++|+.|
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~---~~---~~~~~~-------~~~l-~~~~~L~~L 86 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR---IP---RGLQSL-------LQGL-TKGCGLQEL 86 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC---cc---hHHHHH-------HHHH-HhcCceeEE
Confidence 3455777777777665432 34445556666666666543210 00 000000 0000 125688888
Q ss_pred EEecceee----eecCCC---CCceEEEEEeecCcc-hhhHHHHhhccC-CCceEEEEecceeeeccc---cc---CCCC
Q 014141 239 KYIGQDIN----LHVGSL---PQLVDVVFHVTPMVQ-KMHCIGSIVSYL-PQLKTLELDGCNEVFAQF---SQ---REFP 303 (430)
Q Consensus 239 ~~~~~~~~----~~~~~~---~~L~~~~i~~~~~~~-~~~~~~~l~~~~-~~l~~L~l~~~~~~~~~~---l~---~~~~ 303 (430)
.+.+.... ..+... ++|+.+.+..+.... ....+...+..+ ++|+.|.+..+. +.... +. ..+.
T Consensus 87 ~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~ 165 (319)
T cd00116 87 DLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANR 165 (319)
T ss_pred EccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCC
Confidence 88776432 111122 559999988655432 222333445566 899999998876 43211 11 1256
Q ss_pred ccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCc--cccc-cCcCCCccEEEEeeeecCh-hhHHH
Q 014141 304 KLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKR--HQIS-KHSHQHLKLVELQGFNGRE-IDFEL 379 (430)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~--~~~~-~~~~~~L~~v~i~~~~g~~-~e~~l 379 (430)
+|++|++..+.-.......+...+..+++|+.|++....- .+.+ .... ...+++|+.+.+.+..-.+ .-..+
T Consensus 166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i----~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL----TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc----ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 7888888654322222223445566678999999965421 1111 1111 2345789999998854332 22344
Q ss_pred HHHHHhcccccccEEEecC
Q 014141 380 AFYVFENATMLEKMIIKPS 398 (430)
Q Consensus 380 ~~~ll~~a~~Le~m~i~~~ 398 (430)
+..+..+.+.|+++.+...
T Consensus 242 ~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 242 ASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHhccCCCceEEEccCC
Confidence 4444445689999998765
No 17
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=97.32 E-value=0.00032 Score=39.27 Aligned_cols=25 Identities=36% Similarity=0.638 Sum_probs=22.8
Q ss_pred CCceEEEeeEEEcch-hHHHHhhcCC
Q 014141 165 SLRSLTLCAVNVTGE-VVEFFIHNCP 189 (430)
Q Consensus 165 ~L~~L~L~~~~~~~~-~l~~ll~~cp 189 (430)
+||+|+|.++.+.++ .++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999999876 6999999998
No 18
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.29 E-value=0.00012 Score=76.04 Aligned_cols=131 Identities=19% Similarity=0.191 Sum_probs=80.3
Q ss_pred CCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEEeCCceeEEEE
Q 014141 161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKY 240 (430)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~ 240 (430)
.-||+|++|.+.+..+..+++..+..++|+|..|++.++. ++.+.--+.+++|+.|.+.+...
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L~mrnLe~---------------- 207 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVLSMRNLEF---------------- 207 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHHhccCCCC----------------
Confidence 3689999999999999988899999999999999999883 33332222335555555443320
Q ss_pred ecceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeee-----cccccC--CCCccceEEEEEe
Q 014141 241 IGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVF-----AQFSQR--EFPKLMNLNISFT 313 (430)
Q Consensus 241 ~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~-----~~~l~~--~~~~L~~L~l~~~ 313 (430)
.+. ..+.. +-++.+|+.|+++...... ...+.+ .+|+|+.|+.+.+
T Consensus 208 ---------e~~-----------------~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 208 ---------ESY-----------------QDLID-LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred ---------Cch-----------------hhHHH-HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 000 00101 2235556666655443100 011111 1778888887643
Q ss_pred ecCccchhhHHHHHhhCCCceEEEE
Q 014141 314 AANQETLLGLSFIMKACPFLEKLVL 338 (430)
Q Consensus 314 ~~~~~~~~~l~~lL~~~p~L~~L~l 338 (430)
. .+...+..+++.-|+|+.+.+
T Consensus 261 d---i~~~~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 261 D---INEEILEELLNSHPNLQQIAA 282 (699)
T ss_pred c---hhHHHHHHHHHhCccHhhhhh
Confidence 2 344557788999999988765
No 19
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.12 E-value=5.8e-05 Score=76.01 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=33.7
Q ss_pred cccCCCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhhcccC
Q 014141 20 EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFT 60 (430)
Q Consensus 20 ~d~is~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~lw~~~ 60 (430)
.+.....|++....+....+..+...+..++++|.......
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (482)
T KOG1947|consen 42 LRFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGSL 82 (482)
T ss_pred eeeeeccccchhhhcccccccccccccchhhhhhhhhhhhh
Confidence 35567789999999999999999888999999998865543
No 20
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=5.8e-05 Score=71.59 Aligned_cols=174 Identities=21% Similarity=0.178 Sum_probs=111.5
Q ss_pred CCCCCCceEEEeeEEEcc-hhHHHHhhcCCcccceeeccCCCCc--eeeEecCCCCcceEEEeecCC----ccEEEEeCC
Q 014141 161 SGIKSLRSLTLCAVNVTG-EVVEFFIHNCPLLENLRITQSPDLL--SLKVVGSSIPLKCLDIQFCYS----IKEIEISAP 233 (430)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~L~~~~~~~--~~~i~~~~~~L~~L~l~~c~~----l~~i~i~~P 233 (430)
..||+++.|+|++.-++. ..+..++...|+||.|+|......- .=......+.||.|.+..|+- ...+....|
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 478999999999987765 5678888999999999998753211 101112448899999999982 234566789
Q ss_pred ceeEEEEecce-ee---eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccC--------C
Q 014141 234 NLLSFKYIGQD-IN---LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR--------E 301 (430)
Q Consensus 234 ~L~~L~~~~~~-~~---~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~--------~ 301 (430)
+|+.|.+.+.. .- ........|+++.++.++..... .......+++|+.|.+..+. +.....|+ .
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~--~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD--QGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHT 299 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc--cccccccccchhhhhccccC-cchhcCCCccchhhhcc
Confidence 99999987763 11 12223456777877754432111 11445788888888887766 43322222 2
Q ss_pred CCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141 302 FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI 340 (430)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~ 340 (430)
|++|+.|.+.......+. + ..=++..++|+.|.+..
T Consensus 300 f~kL~~L~i~~N~I~~w~--s-l~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRDWR--S-LNHLRTLENLKHLRITL 335 (505)
T ss_pred cccceeeecccCcccccc--c-cchhhccchhhhhhccc
Confidence 889999988554322222 1 23345567777776644
No 21
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.06 E-value=0.00018 Score=70.73 Aligned_cols=209 Identities=18% Similarity=0.181 Sum_probs=100.1
Q ss_pred CCCCCCCCceEEEeeEEEcch-hHHHHhhcCCcccceeeccCC-------------CCceeeEec------------CCC
Q 014141 159 GLSGIKSLRSLTLCAVNVTGE-VVEFFIHNCPLLENLRITQSP-------------DLLSLKVVG------------SSI 212 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~~~-------------~~~~~~i~~------------~~~ 212 (430)
.|..+|+|+.|.|...++..- .+ -+.+.|.|+.|.|.... +++.+++.. .+.
T Consensus 216 ~Fk~L~~L~~LdLnrN~irive~l--tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt 293 (873)
T KOG4194|consen 216 SFKRLPKLESLDLNRNRIRIVEGL--TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT 293 (873)
T ss_pred Hhhhcchhhhhhccccceeeehhh--hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc
Confidence 444577777777776655431 11 14566677777665431 112111111 112
Q ss_pred CcceEEEeecCCccEEEEe----CCceeEEEEecceee----eecCCCCCceEEEEEeecCcchhhHHH-HhhccCCCce
Q 014141 213 PLKCLDIQFCYSIKEIEIS----APNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYLPQLK 283 (430)
Q Consensus 213 ~L~~L~l~~c~~l~~i~i~----~P~L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~-~l~~~~~~l~ 283 (430)
.|+.|.++... +..|.++ +|+|+.|.+....+. -++.....|+++++.-+ .++++- .-+.++++|+
T Consensus 294 ~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N----si~~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 294 SLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN----SIDHLAEGAFVGLSSLH 368 (873)
T ss_pred hhhhhccchhh-hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc----chHHHHhhHHHHhhhhh
Confidence 23333333221 3334433 456666665544321 12223344555555422 223333 4456777888
Q ss_pred EEEEecce-e--eeccc-ccCCCCccceEEEEEeecCccchhh-HHHHHhhCCCceEEEEEEeccccccccCccccccCc
Q 014141 284 TLELDGCN-E--VFAQF-SQREFPKLMNLNISFTAANQETLLG-LSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHS 358 (430)
Q Consensus 284 ~L~l~~~~-~--~~~~~-l~~~~~~L~~L~l~~~~~~~~~~~~-l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~ 358 (430)
.|+|+.+. . +++.. ....++.|+.|.+... ...+ -..-+...++||+|++.... + ....+.++.
T Consensus 369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-----qlk~I~krAfsgl~~LE~LdL~~Na---i---aSIq~nAFe 437 (873)
T KOG4194|consen 369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-----QLKSIPKRAFSGLEALEHLDLGDNA---I---ASIQPNAFE 437 (873)
T ss_pred hhcCcCCeEEEEEecchhhhccchhhhheeecCc-----eeeecchhhhccCcccceecCCCCc---c---eeecccccc
Confidence 88887665 0 12211 1122667777776432 1111 12455677888888874321 0 111122444
Q ss_pred CCCccEEEEee--eecChhhHHHHHHHHh
Q 014141 359 HQHLKLVELQG--FNGREIDFELAFYVFE 385 (430)
Q Consensus 359 ~~~L~~v~i~~--~~g~~~e~~l~~~ll~ 385 (430)
.-+|+++.|.. |-.+++-..++..+.+
T Consensus 438 ~m~Lk~Lv~nSssflCDCql~Wl~qWl~~ 466 (873)
T KOG4194|consen 438 PMELKELVMNSSSFLCDCQLKWLAQWLYR 466 (873)
T ss_pred cchhhhhhhcccceEEeccHHHHHHHHHh
Confidence 44777777754 4455555556665554
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.03 E-value=0.00017 Score=61.62 Aligned_cols=122 Identities=25% Similarity=0.272 Sum_probs=35.6
Q ss_pred CCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE--E--eCCceeE
Q 014141 162 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--I--SAPNLLS 237 (430)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~--i--~~P~L~~ 237 (430)
+.-+++.|+|.+..|+. ++.+-..+..|+.|.+.++.- +.+.--..+++|+.|.+++-. +..+. + ..|+|+.
T Consensus 17 n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I-~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQI-TKLEGLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccc--ccchhhhhcCCCEEECCCCCC-ccccCccChhhhhhcccCCCC-CCccccchHHhCCcCCE
Confidence 44567888888887743 333333567888888887742 222211234667777776544 33331 1 2477777
Q ss_pred EEEecceee-----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEE
Q 014141 238 FKYIGQDIN-----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLEL 287 (430)
Q Consensus 238 L~~~~~~~~-----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l 287 (430)
|.+.+..+. ..+..+|+|+.+.+..++......|-..++..+|+|+.|+-
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 776655332 12334555666655555544433443344555555555553
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=9.9e-05 Score=70.04 Aligned_cols=177 Identities=18% Similarity=0.188 Sum_probs=116.4
Q ss_pred CCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCC--CC-ceeeEecCCCCcceEEEeec----CCccEEEEeCC
Q 014141 161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP--DL-LSLKVVGSSIPLKCLDIQFC----YSIKEIEISAP 233 (430)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~--~~-~~~~i~~~~~~L~~L~l~~c----~~l~~i~i~~P 233 (430)
.++..|+...|.++.+.+...+...-.||++++|+|+..- .+ .-..|...+|+|+.|.++.- +.-...+...+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 3678899999999988766555777889999999998652 22 23456667799999999753 22233455778
Q ss_pred ceeEEEEecceee-----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccC--CCCccc
Q 014141 234 NLLSFKYIGQDIN-----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR--EFPKLM 306 (430)
Q Consensus 234 ~L~~L~~~~~~~~-----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~--~~~~L~ 306 (430)
+|+.|.+.++.+. .....+|++..+.+..+... .... .-...+..|+.|+|+.+.-+.-..++. .|++|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~--~~~~-~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII--LIKA-TSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc--ceec-chhhhhhHHhhccccCCcccccccccccccccchh
Confidence 9999999888654 35567899998888755311 0000 001234468888888776211121222 288999
Q ss_pred eEEEEEeecCccchh--hHHHHHhhCCCceEEEEEE
Q 014141 307 NLNISFTAANQETLL--GLSFIMKACPFLEKLVLQI 340 (430)
Q Consensus 307 ~L~l~~~~~~~~~~~--~l~~lL~~~p~L~~L~l~~ 340 (430)
.|.+..+.-...... ...+.....|+|+.|.+.-
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE 310 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeeccc
Confidence 998866543332222 1345677889999999854
No 24
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.73 E-value=0.00068 Score=70.60 Aligned_cols=201 Identities=17% Similarity=0.193 Sum_probs=103.0
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCcee-------eEec---------CCCCcceEEEeecCC---
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-------KVVG---------SSIPLKCLDIQFCYS--- 224 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~-------~i~~---------~~~~L~~L~l~~c~~--- 224 (430)
=+|++.+|.+.......++.+...+ |++|.|.++...... .|.. +-.+|++|++.+-..
T Consensus 60 f~ltki~l~~~~~~~~~~~~l~~~~--L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~ 137 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEMLRKQD--LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSN 137 (699)
T ss_pred heeEEeeccceecchhHHHHHhhcc--ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhc
Confidence 4566666666666555555433333 999999987544321 1100 124555665554221
Q ss_pred --ccEEEEeCCceeEEEEecceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCC
Q 014141 225 --IKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREF 302 (430)
Q Consensus 225 --l~~i~i~~P~L~~L~~~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~ 302 (430)
...+.--.|+|++|.+.|... . .+.+..+..++|+|..|+++++. +..-.--..+
T Consensus 138 ~W~~kig~~LPsL~sL~i~~~~~--------------------~--~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~L 194 (699)
T KOG3665|consen 138 GWPKKIGTMLPSLRSLVISGRQF--------------------D--NDDFSQLCASFPNLRSLDISGTN-ISNLSGISRL 194 (699)
T ss_pred cHHHHHhhhCcccceEEecCcee--------------------c--chhHHHHhhccCccceeecCCCC-ccCcHHHhcc
Confidence 122333345555555444322 1 12244777888889999888877 3322111124
Q ss_pred CccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCccccc--cCcCCCccEEEEeeeecChhhHHHH
Q 014141 303 PKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS--KHSHQHLKLVELQGFNGREIDFELA 380 (430)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~--~~~~~~L~~v~i~~~~g~~~e~~l~ 380 (430)
.||+.|.+..-.. .....+..++ +..+|+.|+|+....... ...... +|..- |.++++.+++|++-.-+++
T Consensus 195 knLq~L~mrnLe~--e~~~~l~~LF-~L~~L~vLDIS~~~~~~~---~~ii~qYlec~~~-LpeLrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 195 KNLQVLSMRNLEF--ESYQDLIDLF-NLKKLRVLDISRDKNNDD---TKIIEQYLECGMV-LPELRFLDCSGTDINEEIL 267 (699)
T ss_pred ccHHHHhccCCCC--CchhhHHHHh-cccCCCeeeccccccccc---hHHHHHHHHhccc-CccccEEecCCcchhHHHH
Confidence 4454444321110 1122233333 367888888876543211 101111 34322 3344444555787777788
Q ss_pred HHHHhcccccccEEEe
Q 014141 381 FYVFENATMLEKMIIK 396 (430)
Q Consensus 381 ~~ll~~a~~Le~m~i~ 396 (430)
+.++..=+.|+.+.+.
T Consensus 268 e~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 268 EELLNSHPNLQQIAAL 283 (699)
T ss_pred HHHHHhCccHhhhhhh
Confidence 8888777777777644
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.66 E-value=0.00059 Score=63.14 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=23.8
Q ss_pred CCCCCceEEEeeEEEcch---hHHHHhhcCCcccceeeccC
Q 014141 162 GIKSLRSLTLCAVNVTGE---VVEFFIHNCPLLENLRITQS 199 (430)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~~ 199 (430)
.+.+++.++|++-.|..+ .+...+++-++|++-++...
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ 68 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM 68 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh
Confidence 346677777777777543 35566666666666666543
No 26
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.61 E-value=0.0012 Score=65.15 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=25.1
Q ss_pred CCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccC
Q 014141 161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQS 199 (430)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~ 199 (430)
.-..+|++|.|.+..|+.-.-+ =++..|.||.|+|...
T Consensus 122 ~~sghl~~L~L~~N~I~sv~se-~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 122 HESGHLEKLDLRHNLISSVTSE-ELSALPALRSLDLSRN 159 (873)
T ss_pred ccccceeEEeeeccccccccHH-HHHhHhhhhhhhhhhc
Confidence 3446699999998876542111 2456788888888754
No 27
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.31 E-value=0.00034 Score=70.39 Aligned_cols=63 Identities=25% Similarity=0.384 Sum_probs=38.0
Q ss_pred CCCCCceEEEeeEE-EcchhHHHHhhcCCcccceeeccCCCCcee---eEecCCCCcceEEEeecCC
Q 014141 162 GIKSLRSLTLCAVN-VTGEVVEFFIHNCPLLENLRITQSPDLLSL---KVVGSSIPLKCLDIQFCYS 224 (430)
Q Consensus 162 ~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~---~i~~~~~~L~~L~l~~c~~ 224 (430)
.+++|+.|.|.++. ++|..+..+...||+||.|.+.+|..+++. .+...|+.|++|.+..|..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 44666777777665 666666666666777777776666654332 2233456666666666653
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=95.95 E-value=0.0046 Score=52.93 Aligned_cols=129 Identities=20% Similarity=0.185 Sum_probs=36.1
Q ss_pred cCCcccceeeccCCCCcee-eEecCCCCcceEEEeecCCccEEEEeCCceeEEEEecceeeeecCCCCCceEEEEEeecC
Q 014141 187 NCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPM 265 (430)
Q Consensus 187 ~cp~Le~L~L~~~~~~~~~-~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~~~~~~~~~~~~~L~~~~i~~~~~ 265 (430)
++-.+++|.|.++.- +.+ .+...+.+|+.|.++++. +..++ .+..+++|+.+.++.+..
T Consensus 17 n~~~~~~L~L~~n~I-~~Ie~L~~~l~~L~~L~Ls~N~-I~~l~------------------~l~~L~~L~~L~L~~N~I 76 (175)
T PF14580_consen 17 NPVKLRELNLRGNQI-STIENLGATLDKLEVLDLSNNQ-ITKLE------------------GLPGLPRLKTLDLSNNRI 76 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S--T------------------T----TT--EEE--SS--
T ss_pred ccccccccccccccc-ccccchhhhhcCCCEEECCCCC-Ccccc------------------CccChhhhhhcccCCCCC
Confidence 455678888887742 222 222233566666666554 22211 112344555555553322
Q ss_pred cchhhHHH-HhhccCCCceEEEEecceeeec---ccccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEe
Q 014141 266 VQKMHCIG-SIVSYLPQLKTLELDGCNEVFA---QFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW 341 (430)
Q Consensus 266 ~~~~~~~~-~l~~~~~~l~~L~l~~~~~~~~---~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~ 341 (430)
.. +. .+...+++|+.|.+..+. +.. ...-..+++|+.|++....... ....=..++..+|+|+.|+-+..
T Consensus 77 ~~----i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 77 SS----ISEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -S-----CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEET
T ss_pred Cc----cccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEEc
Confidence 21 11 233456777777776655 322 1111226777777764332111 11123457788899988866543
No 29
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=0.016 Score=52.92 Aligned_cols=216 Identities=11% Similarity=0.071 Sum_probs=120.6
Q ss_pred CCCCCceEEEeeEEEcc-hhHHHHhhcCCcccceeeccCCCCceee-EecCCCCcceEEEeecC----CccEEEEeCCce
Q 014141 162 GIKSLRSLTLCAVNVTG-EVVEFFIHNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFCY----SIKEIEISAPNL 235 (430)
Q Consensus 162 ~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~L~~~~~~~~~~-i~~~~~~L~~L~l~~c~----~l~~i~i~~P~L 235 (430)
.+.+++.|+|.+..+++ +.+..++.+.|.|+.|+|....--..+. .+.+..+|+.|.+.+.. .....--+.|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45888999999998887 6789999999999999998765433332 22455788999887754 112222345666
Q ss_pred eEEEEecceee-eec-----C-CCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccc---cCCCCcc
Q 014141 236 LSFKYIGQDIN-LHV-----G-SLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFS---QREFPKL 305 (430)
Q Consensus 236 ~~L~~~~~~~~-~~~-----~-~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l---~~~~~~L 305 (430)
+.|++++.... +.. + -.+.+..++..-+... -+....++...+|++..+-+..++ ++...- .+.||.+
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~-~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~ 226 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ-LWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSL 226 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHH-HHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcc
Confidence 66665544221 000 0 1122333332211111 112233677788899888887776 433222 2226666
Q ss_pred ceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEecccccccc-CccccccCcCCCccEEEEeeee------cChhhHH
Q 014141 306 MNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGK-KRHQISKHSHQHLKLVELQGFN------GREIDFE 378 (430)
Q Consensus 306 ~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~L~~v~i~~~~------g~~~e~~ 378 (430)
.-|.|+-..-..+ +-.+-|+.+|.|..|.+.-++ .++. .+..+--...-.|..|++-|-+ -.++|..
T Consensus 227 ~~LnL~~~~idsw---asvD~Ln~f~~l~dlRv~~~P---l~d~l~~~err~llIaRL~~v~vLNGskIss~er~dSEr~ 300 (418)
T KOG2982|consen 227 SCLNLGANNIDSW---ASVDALNGFPQLVDLRVSENP---LSDPLRGGERRFLLIARLTKVQVLNGSKISSRERKDSERR 300 (418)
T ss_pred hhhhhcccccccH---HHHHHHcCCchhheeeccCCc---ccccccCCcceEEEEeeccceEEecCcccchhhhhhhHHH
Confidence 6666644322211 234678889999999885442 2211 1111111223456666665522 1247788
Q ss_pred HHHHHHh
Q 014141 379 LAFYVFE 385 (430)
Q Consensus 379 l~~~ll~ 385 (430)
|++|.+.
T Consensus 301 fVRyym~ 307 (418)
T KOG2982|consen 301 FVRYYMS 307 (418)
T ss_pred HHHHHhh
Confidence 8888774
No 30
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.61 E-value=0.018 Score=60.63 Aligned_cols=29 Identities=14% Similarity=0.023 Sum_probs=16.4
Q ss_pred CCceEEEEecceeeecccccCCCCccceEEEE
Q 014141 280 PQLKTLELDGCNEVFAQFSQREFPKLMNLNIS 311 (430)
Q Consensus 280 ~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~ 311 (430)
.+|+.|+++.+. +. .+|...++|+.|.+.
T Consensus 342 ~~Lq~LdLS~N~-Ls--~LP~lp~~L~~L~Ls 370 (788)
T PRK15387 342 SGLQELSVSDNQ-LA--SLPTLPSELYKLWAY 370 (788)
T ss_pred cccceEecCCCc-cC--CCCCCCcccceehhh
Confidence 367777776655 32 234445566666553
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.49 E-value=0.015 Score=61.39 Aligned_cols=30 Identities=23% Similarity=0.092 Sum_probs=14.4
Q ss_pred CCceEEEEecceeeecccccCCCCccceEEEEE
Q 014141 280 PQLKTLELDGCNEVFAQFSQREFPKLMNLNISF 312 (430)
Q Consensus 280 ~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~ 312 (430)
++|+.|++..+. +. .+|...++|+.|+++.
T Consensus 382 ~~L~~LdLs~N~-Lt--~LP~l~s~L~~LdLS~ 411 (788)
T PRK15387 382 SGLKELIVSGNR-LT--SLPVLPSELKELMVSG 411 (788)
T ss_pred cccceEEecCCc-cc--CCCCcccCCCEEEccC
Confidence 356666665544 22 2333344555555533
No 32
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=95.17 E-value=0.017 Score=55.17 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=34.5
Q ss_pred cCCCCCHHHHHHHHhcCC-hHHHHHHHHhhhhhhhhccc
Q 014141 22 WFSRFPDDILIHIISGLT-LKEAARTSVLSSRWKYLWTF 59 (430)
Q Consensus 22 ~is~LPdeiL~~Ils~L~-~~d~~rts~vSrrWr~lw~~ 59 (430)
.+++||+|+|..|..+|+ .-|.+|.+.|||.||.....
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 388999999999999997 78999999999999997554
No 33
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.15 E-value=0.033 Score=51.44 Aligned_cols=36 Identities=25% Similarity=0.470 Sum_probs=34.1
Q ss_pred cccCCCCC----HHHHHHHHhcCChHHHHHHHHhhhhhhh
Q 014141 20 EDWFSRFP----DDILIHIISGLTLKEAARTSVLSSRWKY 55 (430)
Q Consensus 20 ~d~is~LP----deiL~~Ils~L~~~d~~rts~vSrrWr~ 55 (430)
.|-|..|| |+|-..|||+|+..++..|-.|||+|++
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r 111 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR 111 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence 47789999 9999999999999999999999999986
No 34
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=93.69 E-value=0.041 Score=50.43 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=31.0
Q ss_pred ccCCCCCHHHHHHHHhc-----CChHHHHHHHHhhhhhhhh
Q 014141 21 DWFSRFPDDILIHIISG-----LTLKEAARTSVLSSRWKYL 56 (430)
Q Consensus 21 d~is~LPdeiL~~Ils~-----L~~~d~~rts~vSrrWr~l 56 (430)
+.|+.||||||..||.. |+.++..++|+|||.|+..
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~ 145 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC 145 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence 55789999999999865 4579999999999999863
No 35
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.60 E-value=0.0037 Score=53.72 Aligned_cols=64 Identities=17% Similarity=0.164 Sum_probs=40.6
Q ss_pred CCCCCCceEEEeeE-EEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCC
Q 014141 161 SGIKSLRSLTLCAV-NVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYS 224 (430)
Q Consensus 161 ~~~~~L~~L~L~~~-~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~ 224 (430)
.+++.+++|.+.+| .++|.-++.+-...|+||+|+|.+|..+++-.+. ..+++|+.|.+.+.+.
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 45677777777777 4555556666666788888888888766542222 1346677776666553
No 36
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.54 E-value=0.11 Score=50.38 Aligned_cols=29 Identities=28% Similarity=0.495 Sum_probs=13.7
Q ss_pred CceEEEEecceeeecccccCC-CCccceEEEEE
Q 014141 281 QLKTLELDGCNEVFAQFSQRE-FPKLMNLNISF 312 (430)
Q Consensus 281 ~l~~L~l~~~~~~~~~~l~~~-~~~L~~L~l~~ 312 (430)
+|+.|.+..+.. ..+|.. -.+|++|.++.
T Consensus 157 SLk~L~Is~c~~---i~LP~~LP~SLk~L~ls~ 186 (426)
T PRK15386 157 SLKTLSLTGCSN---IILPEKLPESLQSITLHI 186 (426)
T ss_pred cccEEEecCCCc---ccCcccccccCcEEEecc
Confidence 566666655441 112221 23566666543
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=93.23 E-value=0.026 Score=38.97 Aligned_cols=14 Identities=36% Similarity=0.581 Sum_probs=6.5
Q ss_pred hcCCcccceeeccC
Q 014141 186 HNCPLLENLRITQS 199 (430)
Q Consensus 186 ~~cp~Le~L~L~~~ 199 (430)
.++|+|+.|.|.++
T Consensus 22 ~~l~~L~~L~l~~N 35 (61)
T PF13855_consen 22 SNLPNLETLDLSNN 35 (61)
T ss_dssp TTGTTESEEEETSS
T ss_pred cCCCCCCEeEccCC
Confidence 34455555555433
No 38
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=92.71 E-value=0.061 Score=34.40 Aligned_cols=35 Identities=31% Similarity=0.474 Sum_probs=26.8
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCC
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP 200 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~ 200 (430)
++|++|.|.+..+++ +...++.||+|+.|.+.++.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 578999999888764 55557899999999999884
No 39
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=92.34 E-value=0.0057 Score=61.12 Aligned_cols=35 Identities=26% Similarity=0.247 Sum_probs=21.7
Q ss_pred CCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEe
Q 014141 302 FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW 341 (430)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~ 341 (430)
|+.|+.|.|.- +....++.-+.-.|.|+.|+++..
T Consensus 338 C~kL~kL~L~~-----NrLiTLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 338 CVKLQKLKLDH-----NRLITLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred hHHHHHhcccc-----cceeechhhhhhcCCcceeeccCC
Confidence 66777777633 233345566666777888877543
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=92.11 E-value=0.1 Score=56.31 Aligned_cols=17 Identities=12% Similarity=-0.003 Sum_probs=10.7
Q ss_pred CcCCCccEEEEeeeecC
Q 014141 357 HSHQHLKLVELQGFNGR 373 (430)
Q Consensus 357 ~~~~~L~~v~i~~~~g~ 373 (430)
..+.+|+.+.|.++.+.
T Consensus 714 ~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 714 GSLGNLEELSILDCGIS 730 (889)
T ss_pred ccccCcceEEEEcCCCc
Confidence 35566777777766554
No 41
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.68 E-value=0.17 Score=46.45 Aligned_cols=86 Identities=17% Similarity=0.175 Sum_probs=60.2
Q ss_pred CCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeec--ccccCCCCccceEEEEEeecCccchhhHHHHHh
Q 014141 251 SLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFA--QFSQREFPKLMNLNISFTAANQETLLGLSFIMK 328 (430)
Q Consensus 251 ~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~--~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~ 328 (430)
.+..++++.+.-+ ..+.+..+..++.++|+++.|.++++. +.. ..+|-...||+.|-|.... ..+..+-.++.
T Consensus 69 ~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp~p~~nl~~lVLNgT~---L~w~~~~s~l~ 143 (418)
T KOG2982|consen 69 SVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLPLPLKNLRVLVLNGTG---LSWTQSTSSLD 143 (418)
T ss_pred Hhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCc-CCCccccCcccccceEEEEEcCCC---CChhhhhhhhh
Confidence 3555666666532 333455666899999999999999887 443 2344336788888885542 45556778999
Q ss_pred hCCCceEEEEEEe
Q 014141 329 ACPFLEKLVLQIW 341 (430)
Q Consensus 329 ~~p~L~~L~l~~~ 341 (430)
..|.++.|++...
T Consensus 144 ~lP~vtelHmS~N 156 (418)
T KOG2982|consen 144 DLPKVTELHMSDN 156 (418)
T ss_pred cchhhhhhhhccc
Confidence 9999999988664
No 42
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.20 E-value=0.14 Score=46.25 Aligned_cols=224 Identities=16% Similarity=0.092 Sum_probs=117.7
Q ss_pred eeEEEEEEecCCCCCccHhHHHHHHhhcCcEEEEEEcCCCCCCCc--eeeccccccccCC-CCCCCCCCCCceEEEeeEE
Q 014141 99 INQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNY--YEIPQECYKNLQS-GCGLSGIKSLRSLTLCAVN 175 (430)
Q Consensus 99 l~~l~l~~~~~~~~~~~v~~wl~~~~~~~v~~L~l~~~~~~~~~~--~~lp~~~~~~l~~-p~~~~~~~~L~~L~L~~~~ 175 (430)
+..+.+.+. ..+.....|+....+ +++.|.+.......... -++|.. +.+ -+.+.+||+|++.+|+...
T Consensus 32 ~~evdLSGN---tigtEA~e~l~~~ia-~~~~L~vvnfsd~ftgr~kde~~~~----L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 32 LVEVDLSGN---TIGTEAMEELCNVIA-NVRNLRVVNFSDAFTGRDKDELYSN----LVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred eeEEeccCC---cccHHHHHHHHHHHh-hhcceeEeehhhhhhcccHHHHHHH----HHHHHHHHhcCCcceeeeccccc
Confidence 455555332 123456778887766 35555553322210000 001100 110 1133577888888888777
Q ss_pred Ecc---hhHHHHhhcCCcccceeeccCCCCcee---eEecCCCCcceEEEeecCCccEEEEeCCceeEEEEeccee-e--
Q 014141 176 VTG---EVVEFFIHNCPLLENLRITQSPDLLSL---KVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDI-N-- 246 (430)
Q Consensus 176 ~~~---~~l~~ll~~cp~Le~L~L~~~~~~~~~---~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~~~~-~-- 246 (430)
|.. +.+..++++...|+.|.|.+| |+..+ +|. .-|.+|... .=.-++|.|+.+.+..... .
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rig---kal~~la~n------KKaa~kp~Le~vicgrNRlengs 173 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIG---KALFHLAYN------KKAADKPKLEVVICGRNRLENGS 173 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHH---HHHHHHHHH------hhhccCCCceEEEeccchhccCc
Confidence 654 347777888888888888877 32211 221 112222211 1123678888887654322 1
Q ss_pred -----eecCCCCCceEEEEEeecCcch-hhHH-HHhhccCCCceEEEEecceeeec------ccccCCCCccceEEEEEe
Q 014141 247 -----LHVGSLPQLVDVVFHVTPMVQK-MHCI-GSIVSYLPQLKTLELDGCNEVFA------QFSQREFPKLMNLNISFT 313 (430)
Q Consensus 247 -----~~~~~~~~L~~~~i~~~~~~~~-~~~~-~~l~~~~~~l~~L~l~~~~~~~~------~~l~~~~~~L~~L~l~~~ 313 (430)
..+.+-..|+.+.+..+..... ..-+ ..-+..+.+|+.|++..+. ... ....+..++|+.|.+.-|
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccchhhhccccch
Confidence 1112224688888876544321 1111 1234567889999997766 221 122334778999998776
Q ss_pred ecCccchhhHHHHHh--hCCCceEEEEEEe
Q 014141 314 AANQETLLGLSFIMK--ACPFLEKLVLQIW 341 (430)
Q Consensus 314 ~~~~~~~~~l~~lL~--~~p~L~~L~l~~~ 341 (430)
.-+.....++.+-+. ..|+|..|-.++.
T Consensus 253 lls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 253 LLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred hhccccHHHHHHHhhhhcCCCccccccchh
Confidence 554444433333332 3688888877654
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=91.19 E-value=0.22 Score=34.23 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=18.8
Q ss_pred CcccceeeccCCCCceeeEe--cCCCCcceEEEeecC
Q 014141 189 PLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCY 223 (430)
Q Consensus 189 p~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~ 223 (430)
|+|+.|.+.+| .++.+.-. ..+++|+.|.+.++.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~ 36 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNN 36 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCc
Confidence 57777888777 34433221 234566666665444
No 44
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=90.80 E-value=0.56 Score=40.67 Aligned_cols=82 Identities=21% Similarity=0.232 Sum_probs=52.2
Q ss_pred CCCCCCCCceEEEeeEEEcc--hhHHHHhhcCCcccceeeccCCC--CceeeEecCCCCcceEEEeecC-----CccEEE
Q 014141 159 GLSGIKSLRSLTLCAVNVTG--EVVEFFIHNCPLLENLRITQSPD--LLSLKVVGSSIPLKCLDIQFCY-----SIKEIE 229 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~--~~l~~ll~~cp~Le~L~L~~~~~--~~~~~i~~~~~~L~~L~l~~c~-----~l~~i~ 229 (430)
.+.++++|.+|.|.+.+|+. ..+..+ .|+|..|.|.+... +.++.-.++||+|+.|++-+-+ +.....
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~---~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yv 135 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRIDPDLDTF---LPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYV 135 (233)
T ss_pred cCCCccccceEEecCCcceeeccchhhh---ccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEE
Confidence 33477999999999887763 344443 58888998887542 3445445567788888776543 123333
Q ss_pred E-eCCceeEEEEecc
Q 014141 230 I-SAPNLLSFKYIGQ 243 (430)
Q Consensus 230 i-~~P~L~~L~~~~~ 243 (430)
+ -.|+|+.|++.+.
T Consensus 136 l~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 136 LYKLPSLRTLDFQKV 150 (233)
T ss_pred EEecCcceEeehhhh
Confidence 3 3477777766543
No 45
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=90.44 E-value=0.14 Score=28.49 Aligned_cols=17 Identities=24% Similarity=0.643 Sum_probs=14.6
Q ss_pred CCcccceeeccCCCCce
Q 014141 188 CPLLENLRITQSPDLLS 204 (430)
Q Consensus 188 cp~Le~L~L~~~~~~~~ 204 (430)
||+|++|.|.+|..+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 78999999999987765
No 46
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=89.97 E-value=0.16 Score=53.86 Aligned_cols=30 Identities=33% Similarity=0.313 Sum_probs=14.7
Q ss_pred CCceEEEEecceeeecccccCC-CCccceEEEEE
Q 014141 280 PQLKTLELDGCNEVFAQFSQRE-FPKLMNLNISF 312 (430)
Q Consensus 280 ~~l~~L~l~~~~~~~~~~l~~~-~~~L~~L~l~~ 312 (430)
++|+.|.+..+. +. .+|.. .++|+.|+++.
T Consensus 325 ~sL~~L~Ls~N~-Lt--~LP~~l~~sL~~L~Ls~ 355 (754)
T PRK15370 325 PGLKTLEAGENA-LT--SLPASLPPELQVLDVSK 355 (754)
T ss_pred ccceeccccCCc-cc--cCChhhcCcccEEECCC
Confidence 356666665554 22 12222 34666666644
No 47
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=89.73 E-value=0.15 Score=54.06 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=25.4
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeec
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFC 222 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c 222 (430)
++|+.|.|+++.+.. +..-+ ..+|+.|.+.++ .++.+.-. -.++|+.|.++++
T Consensus 241 ~~L~~L~Ls~N~L~~--LP~~l--~s~L~~L~Ls~N-~L~~LP~~-l~~sL~~L~Ls~N 293 (754)
T PRK15370 241 DTIQEMELSINRITE--LPERL--PSALQSLDLFHN-KISCLPEN-LPEELRYLSVYDN 293 (754)
T ss_pred ccccEEECcCCccCc--CChhH--hCCCCEEECcCC-ccCccccc-cCCCCcEEECCCC
Confidence 467777777765542 11111 135666666544 22222111 1135666666655
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=89.40 E-value=0.55 Score=45.72 Aligned_cols=113 Identities=18% Similarity=0.208 Sum_probs=58.5
Q ss_pred hhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE-EeCCceeEEEEecc-eeeeecCCC-CCceEEEEE
Q 014141 185 IHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-ISAPNLLSFKYIGQ-DINLHVGSL-PQLVDVVFH 261 (430)
Q Consensus 185 l~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~-i~~P~L~~L~~~~~-~~~~~~~~~-~~L~~~~i~ 261 (430)
+..|++++.|.+.+| .++.+. ..+ ++|++|.+.+|..+..+. .-.++|++|.+.++ ... .. +.|+.+.+.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP-~LP-~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~----sLP~sLe~L~L~ 120 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLP-VLP-NELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS----GLPESVRSLEIK 120 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccC-CCC-CCCcEEEccCCCCcccCCchhhhhhhheEccCccccc----ccccccceEEeC
Confidence 445777888888877 444432 111 457888887777655443 12357777777765 221 22 346666654
Q ss_pred eecCcchhhHHHHhhccC-CCceEEEEecceeeecccccCCC-CccceEEEEE
Q 014141 262 VTPMVQKMHCIGSIVSYL-PQLKTLELDGCNEVFAQFSQREF-PKLMNLNISF 312 (430)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~-~~l~~L~l~~~~~~~~~~l~~~~-~~L~~L~l~~ 312 (430)
... .. . +..+ ++|+.|.+...........+..+ ++|++|.+..
T Consensus 121 ~n~-~~------~-L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~ 165 (426)
T PRK15386 121 GSA-TD------S-IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTG 165 (426)
T ss_pred CCC-Cc------c-cccCcchHhheeccccccccccccccccCCcccEEEecC
Confidence 211 10 1 1223 25677776432201111122222 5799999865
No 49
>PF13013 F-box-like_2: F-box-like domain
Probab=87.68 E-value=0.65 Score=36.15 Aligned_cols=30 Identities=13% Similarity=-0.065 Sum_probs=27.0
Q ss_pred cCCCCCHHHHHHHHhcCChHHHHHHHHhhh
Q 014141 22 WFSRFPDDILIHIISGLTLKEAARTSVLSS 51 (430)
Q Consensus 22 ~is~LPdeiL~~Ils~L~~~d~~rts~vSr 51 (430)
.+.+||+||+..|+.+-...+...++..++
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 588899999999999999999988887776
No 50
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.56 E-value=0.048 Score=49.35 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=27.7
Q ss_pred CCceeEEEEecceee--eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141 232 APNLLSFKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 291 (430)
Q Consensus 232 ~P~L~~L~~~~~~~~--~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~ 291 (430)
.|.|+.|.++-..+. -.+..+.+|+++++.-+...+ ++.+ ..+.++++|+.|-|..++
T Consensus 40 Mp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~s-ldEL-~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIES-LDEL-EYLKNLPSLRTLWLDENP 99 (388)
T ss_pred cccceeEEeeccccccchhHHHHHHHHHHHHHhccccc-HHHH-HHHhcCchhhhHhhccCC
Confidence 455555554433221 123456666666655322111 1111 335677777777765444
No 51
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=86.00 E-value=0.19 Score=52.93 Aligned_cols=166 Identities=20% Similarity=0.168 Sum_probs=74.6
Q ss_pred CCCCCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEEeCCce
Q 014141 156 SGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNL 235 (430)
Q Consensus 156 ~p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L 235 (430)
+|.++..+.+|+.|+++.-.|.. +...+..|..++.+...+...+..+.. .+.|.+.+....-...+.++--.+
T Consensus 106 lP~~~~~lknl~~LdlS~N~f~~--~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~~ik~~~l~~n~l~~~~~~~i~~l 179 (1081)
T KOG0618|consen 106 LPASISELKNLQYLDLSFNHFGP--IPLVIEVLTAEEELAASNNEKIQRLGQ----TSIKKLDLRLNVLGGSFLIDIYNL 179 (1081)
T ss_pred CchhHHhhhcccccccchhccCC--CchhHHhhhHHHHHhhhcchhhhhhcc----ccchhhhhhhhhcccchhcchhhh
Confidence 45555667777777777776643 233344555566665554422111111 113333333222112222222233
Q ss_pred eE-EEEecceee-eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEe
Q 014141 236 LS-FKYIGQDIN-LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFT 313 (430)
Q Consensus 236 ~~-L~~~~~~~~-~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~ 313 (430)
+. +++.+.... ..+..++.|+.++...+... .+-...++++.|....+. +........-.||+.++++.
T Consensus 180 ~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls-------~l~~~g~~l~~L~a~~n~-l~~~~~~p~p~nl~~~dis~- 250 (1081)
T KOG0618|consen 180 THQLDLRYNEMEVLDLSNLANLEVLHCERNQLS-------ELEISGPSLTALYADHNP-LTTLDVHPVPLNLQYLDISH- 250 (1081)
T ss_pred heeeecccchhhhhhhhhccchhhhhhhhcccc-------eEEecCcchheeeeccCc-ceeeccccccccceeeecch-
Confidence 33 343333221 23334444444433321111 222344455555555444 22111111134666666644
Q ss_pred ecCccchhhHHHHHhhCCCceEEEEEE
Q 014141 314 AANQETLLGLSFIMKACPFLEKLVLQI 340 (430)
Q Consensus 314 ~~~~~~~~~l~~lL~~~p~L~~L~l~~ 340 (430)
..+..++..+..|++|+.|.+..
T Consensus 251 ----n~l~~lp~wi~~~~nle~l~~n~ 273 (1081)
T KOG0618|consen 251 ----NNLSNLPEWIGACANLEALNANH 273 (1081)
T ss_pred ----hhhhcchHHHHhcccceEecccc
Confidence 33444567777777777776643
No 52
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.28 E-value=0.017 Score=52.14 Aligned_cols=105 Identities=21% Similarity=0.300 Sum_probs=58.1
Q ss_pred CCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEEeCCceeEEEEec
Q 014141 163 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIG 242 (430)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~ 242 (430)
+.+.++|++++|.++|-.+ ....|.||.|.|.-.. ++.+.--.-|.+|++|-+.... | ++|..|.
T Consensus 18 l~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN~------I--~sldEL~--- 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKNC------I--ESLDELE--- 82 (388)
T ss_pred HHHhhhhcccCCCccHHHH---HHhcccceeEEeeccc-cccchhHHHHHHHHHHHHHhcc------c--ccHHHHH---
Confidence 4667888888888766332 3356888888886442 2222222223445444433211 0 1111111
Q ss_pred ceeeeecCCCCCceEEEEEeecCcchhh--HHHHhhccCCCceEEEE
Q 014141 243 QDINLHVGSLPQLVDVVFHVTPMVQKMH--CIGSIVSYLPQLKTLEL 287 (430)
Q Consensus 243 ~~~~~~~~~~~~L~~~~i~~~~~~~~~~--~~~~l~~~~~~l~~L~l 287 (430)
-+.++|+|+.+++.-++-+...+ |-...+..+|+|+.|+=
T Consensus 83 -----YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 83 -----YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred -----HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 13467888888887665544332 33367788889988874
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.82 E-value=0.2 Score=45.01 Aligned_cols=65 Identities=20% Similarity=0.169 Sum_probs=33.9
Q ss_pred HHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecC-----CccEEEEeCCceeEEEEecceee
Q 014141 181 VEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCY-----SIKEIEISAPNLLSFKYIGQDIN 246 (430)
Q Consensus 181 l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~-----~l~~i~i~~P~L~~L~~~~~~~~ 246 (430)
+..+....-.|+.|.+.+|...+....+ .+++||.|.++.-. .+..+...+|+|+++++.+..+.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~~~P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLTNFP-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceeecccCC-CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3333334445555555555322222222 23566777665431 23334455688888888887654
No 54
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=84.28 E-value=0.28 Score=53.01 Aligned_cols=63 Identities=27% Similarity=0.280 Sum_probs=33.7
Q ss_pred CCCCCCceEEEeeEEE-cchhHHHHhhcCCcccceeeccCCCCceeeEe-cCCCCcceEEEeecC
Q 014141 161 SGIKSLRSLTLCAVNV-TGEVVEFFIHNCPLLENLRITQSPDLLSLKVV-GSSIPLKCLDIQFCY 223 (430)
Q Consensus 161 ~~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~-~~~~~L~~L~l~~c~ 223 (430)
..++.|++|-+.+..- -...-..++...|.|..|+|++|.....+.-. +.+-+||.|++.++.
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~ 606 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG 606 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC
Confidence 3556777777776531 11112334566778888888776654433111 223455666555544
No 55
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=83.87 E-value=0.026 Score=47.30 Aligned_cols=42 Identities=26% Similarity=0.164 Sum_probs=22.5
Q ss_pred ccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEe
Q 014141 298 SQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW 341 (430)
Q Consensus 298 l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~ 341 (430)
+|....+|+.|++-.-. +.+..++..-+.....|++|.|++.
T Consensus 142 lp~dvg~lt~lqil~lr--dndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 142 LPPDVGKLTNLQILSLR--DNDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred CChhhhhhcceeEEeec--cCchhhCcHHHHHHHHHHHHhcccc
Confidence 44445556666642221 2445555566666666677766654
No 56
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=83.87 E-value=0.5 Score=48.12 Aligned_cols=39 Identities=23% Similarity=0.469 Sum_probs=36.1
Q ss_pred CccccCCCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhh
Q 014141 18 NLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYL 56 (430)
Q Consensus 18 ~~~d~is~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~l 56 (430)
...|.++.||-|+..+|+++|+.++.+.++++|+.|+.+
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 346899999999999999999999999999999999874
No 57
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=83.34 E-value=0.2 Score=52.82 Aligned_cols=176 Identities=20% Similarity=0.196 Sum_probs=85.5
Q ss_pred CCCCCCCCCCCCceEEEeeEEEcc--hhH--------HHHhhcCC--------------cccceeeccCCCCc-eeeEec
Q 014141 155 QSGCGLSGIKSLRSLTLCAVNVTG--EVV--------EFFIHNCP--------------LLENLRITQSPDLL-SLKVVG 209 (430)
Q Consensus 155 ~~p~~~~~~~~L~~L~L~~~~~~~--~~l--------~~ll~~cp--------------~Le~L~L~~~~~~~-~~~i~~ 209 (430)
.+|+..+++.+|++|.|....+.. +.+ +.+-.+|- .|+.|.+.+..--+ .+.+-.
T Consensus 301 yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~ 380 (1081)
T KOG0618|consen 301 YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV 380 (1081)
T ss_pred hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc
Confidence 356777789999999999886643 111 11111222 23333333322111 111112
Q ss_pred CCCCcceEEEeecCCccEEE----EeCCceeEEEEeccee---eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCc
Q 014141 210 SSIPLKCLDIQFCYSIKEIE----ISAPNLLSFKYIGQDI---NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQL 282 (430)
Q Consensus 210 ~~~~L~~L~l~~c~~l~~i~----i~~P~L~~L~~~~~~~---~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l 282 (430)
.++.||.|.+..-. +..+. -.-+.|+.|.++|... +..+..+++|+.+.-+-+... .+ .-+..++.|
T Consensus 381 ~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~----~f-Pe~~~l~qL 454 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL----SF-PELAQLPQL 454 (1081)
T ss_pred cccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee----ec-hhhhhcCcc
Confidence 33556666655432 11111 1224455555555532 122233444444433321111 11 224677888
Q ss_pred eEEEEecceeeecccccCC--CCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEe
Q 014141 283 KTLELDGCNEVFAQFSQRE--FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW 341 (430)
Q Consensus 283 ~~L~l~~~~~~~~~~l~~~--~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~ 341 (430)
+.++++++. +....++.. -++|++|+++.......+ ..-|..+.++..+.+...
T Consensus 455 ~~lDlS~N~-L~~~~l~~~~p~p~LkyLdlSGN~~l~~d----~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 455 KVLDLSCNN-LSEVTLPEALPSPNLKYLDLSGNTRLVFD----HKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred eEEecccch-hhhhhhhhhCCCcccceeeccCCcccccc----hhhhHHhhhhhheecccC
Confidence 889988887 655555554 368999998665321111 234444555555555544
No 58
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=82.69 E-value=0.22 Score=50.35 Aligned_cols=59 Identities=14% Similarity=0.066 Sum_probs=34.5
Q ss_pred ccCCCceEEEEecceeeecccccCC---CCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEe
Q 014141 277 SYLPQLKTLELDGCNEVFAQFSQRE---FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW 341 (430)
Q Consensus 277 ~~~~~l~~L~l~~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~ 341 (430)
..+++|+.|+++... -....+|.. +.||..++++- ++...++.-+-..++|+.|.++..
T Consensus 194 PsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~-----N~Lp~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 194 PSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSE-----NNLPIVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred ccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccc-----cCCCcchHHHhhhhhhheeccCcC
Confidence 344455555555554 222334443 66777777643 344456677778888888887654
No 59
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.14 E-value=0.56 Score=40.63 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=32.5
Q ss_pred hhcCCcccceeeccCCCCceee---EecCCCCcceEEEeecCCccE
Q 014141 185 IHNCPLLENLRITQSPDLLSLK---VVGSSIPLKCLDIQFCYSIKE 227 (430)
Q Consensus 185 l~~cp~Le~L~L~~~~~~~~~~---i~~~~~~L~~L~l~~c~~l~~ 227 (430)
+..++.++.|.+.+|..+.+.. +....++|+.|+|++|+.+.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 5689999999999998876542 333558888888888885444
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=79.92 E-value=6.8 Score=35.84 Aligned_cols=68 Identities=24% Similarity=0.179 Sum_probs=37.9
Q ss_pred hCCCceEEEEEEeccccccccCcccccc-CcCCCccEEEEeeeecChhh--HHHHHHHHhcccccccEEEecCC
Q 014141 329 ACPFLEKLVLQIWNNGRRIGKKRHQISK-HSHQHLKLVELQGFNGREID--FELAFYVFENATMLEKMIIKPSG 399 (430)
Q Consensus 329 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~~L~~v~i~~~~g~~~e--~~l~~~ll~~a~~Le~m~i~~~~ 399 (430)
+-|.|++....-.+..+...+. |-.. -++..|++|+|+ +.|...+ -.++-+=+.++..||.+.+.-..
T Consensus 155 ~kp~Le~vicgrNRlengs~~~--~a~~l~sh~~lk~vki~-qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKEL--SAALLESHENLKEVKIQ-QNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred cCCCceEEEeccchhccCcHHH--HHHHHHhhcCceeEEee-ecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence 4577777766433211111111 1111 234678888888 4455443 34555666788888888886544
No 61
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=79.72 E-value=0.29 Score=46.78 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=29.2
Q ss_pred CCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEecc
Q 014141 302 FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNN 343 (430)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~ 343 (430)
+.||+.|++.. .+...++.++.+|.+|++|++.+.++
T Consensus 504 m~nL~tLDL~n-----Ndlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 504 MRNLTTLDLQN-----NDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhhcceeccCC-----CchhhCChhhccccceeEEEecCCcc
Confidence 66777777743 56777889999999999999977654
No 62
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=79.39 E-value=0.76 Score=45.01 Aligned_cols=140 Identities=19% Similarity=0.196 Sum_probs=66.0
Q ss_pred CCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEE--eCCc-eeEEEEe
Q 014141 165 SLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI--SAPN-LLSFKYI 241 (430)
Q Consensus 165 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i--~~P~-L~~L~~~ 241 (430)
+|+.|++.+-.+.. +..-+..+|.|+.|.+.++....-....+..+.|+.|.+++.. +..+.- ..++ |+++.+.
T Consensus 141 nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhc
Confidence 77777777766533 2123567888888888877532221111123667777776654 333332 2333 6666555
Q ss_pred cce-e--eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEE
Q 014141 242 GQD-I--NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISF 312 (430)
Q Consensus 242 ~~~-~--~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~ 312 (430)
+.. . ...+.....+..+.+.... .......+..+++++.|.+.... +.....-....++++|++..
T Consensus 218 ~N~~~~~~~~~~~~~~l~~l~l~~n~----~~~~~~~~~~l~~l~~L~~s~n~-i~~i~~~~~~~~l~~L~~s~ 286 (394)
T COG4886 218 NNSIIELLSSLSNLKNLSGLELSNNK----LEDLPESIGNLSNLETLDLSNNQ-ISSISSLGSLTNLRELDLSG 286 (394)
T ss_pred CCcceecchhhhhcccccccccCCce----eeeccchhccccccceecccccc-ccccccccccCccCEEeccC
Confidence 441 1 1122223333322211111 01111344556666777666655 32222122255666666533
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=77.84 E-value=0.8 Score=41.23 Aligned_cols=82 Identities=20% Similarity=0.227 Sum_probs=52.1
Q ss_pred CCCCCCceEEEeeEEEcch-hHHHHhhcCCcccceeeccCCC--CceeeEecCCCCcceEEEeecCCcc------EEEEe
Q 014141 161 SGIKSLRSLTLCAVNVTGE-VVEFFIHNCPLLENLRITQSPD--LLSLKVVGSSIPLKCLDIQFCYSIK------EIEIS 231 (430)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~~~~--~~~~~i~~~~~~L~~L~l~~c~~l~------~i~i~ 231 (430)
..+|+||+|.++...+... .+.-++..||+|+.|.+.+... +..++-.....+|+.|.+.+|.... .+-.-
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 3678999999998855442 4666677889999999987742 3333333344667777877776322 11123
Q ss_pred CCceeEEEEec
Q 014141 232 APNLLSFKYIG 242 (430)
Q Consensus 232 ~P~L~~L~~~~ 242 (430)
.|+|.+|+..+
T Consensus 142 l~~L~~LD~~d 152 (260)
T KOG2739|consen 142 LPSLKYLDGCD 152 (260)
T ss_pred hhhhccccccc
Confidence 46666665443
No 64
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=77.66 E-value=0.082 Score=44.44 Aligned_cols=34 Identities=26% Similarity=0.300 Sum_probs=19.4
Q ss_pred hccCCCceEEEEecceeeecccccCC---CCccceEEEEE
Q 014141 276 VSYLPQLKTLELDGCNEVFAQFSQRE---FPKLMNLNISF 312 (430)
Q Consensus 276 ~~~~~~l~~L~l~~~~~~~~~~l~~~---~~~L~~L~l~~ 312 (430)
...+++|+.|.++... ...+|.. +..|++|.+..
T Consensus 146 vg~lt~lqil~lrdnd---ll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 146 VGKLTNLQILSLRDND---LLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhcceeEEeeccCc---hhhCcHHHHHHHHHHHHhccc
Confidence 4566777777776665 1234444 44566666533
No 65
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=77.60 E-value=1.7 Score=27.67 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=21.5
Q ss_pred CcccceeeccCCCCceeeE-ecCCCCcceEEEeecC
Q 014141 189 PLLENLRITQSPDLLSLKV-VGSSIPLKCLDIQFCY 223 (430)
Q Consensus 189 p~Le~L~L~~~~~~~~~~i-~~~~~~L~~L~l~~c~ 223 (430)
|+||+|.+.++. ++.+.- -..+++|+.|.++++.
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCC
Confidence 578899998874 333332 3456778888777765
No 66
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=77.55 E-value=3.9 Score=26.91 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=30.1
Q ss_pred CCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEE
Q 014141 302 FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQ 339 (430)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~ 339 (430)
..+|+.+.+....+...+..-+..++++++.|+++.|.
T Consensus 13 ~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 13 LSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred hheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 57889888865545556666678899999999999985
No 67
>PLN03150 hypothetical protein; Provisional
Probab=77.00 E-value=1.5 Score=45.81 Aligned_cols=78 Identities=17% Similarity=0.155 Sum_probs=39.9
Q ss_pred CceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee-EecCCCCcceEEEeecCCccEE---EEeCCceeEEEEe
Q 014141 166 LRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFCYSIKEI---EISAPNLLSFKYI 241 (430)
Q Consensus 166 L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~-i~~~~~~L~~L~l~~c~~l~~i---~i~~P~L~~L~~~ 241 (430)
++.|.|.+..+.+. +..-+..+++|+.|.|.++.....+. .-..+++|+.|++.++.-...+ --..++|+.|++.
T Consensus 420 v~~L~L~~n~L~g~-ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCcccc-CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 55566665544321 22235566777777777664322221 1123466777777665421111 1245677777776
Q ss_pred cce
Q 014141 242 GQD 244 (430)
Q Consensus 242 ~~~ 244 (430)
+..
T Consensus 499 ~N~ 501 (623)
T PLN03150 499 GNS 501 (623)
T ss_pred CCc
Confidence 653
No 68
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=76.13 E-value=3.5 Score=35.95 Aligned_cols=93 Identities=22% Similarity=0.193 Sum_probs=49.3
Q ss_pred hccCCCceEEEEecceeeec--ccccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCccc
Q 014141 276 VSYLPQLKTLELDGCNEVFA--QFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQ 353 (430)
Q Consensus 276 ~~~~~~l~~L~l~~~~~~~~--~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~ 353 (430)
+..++.|.+|.+..+. +.. ..+...+++|+.|.|....- .++. =..=|..||.|+.|++...+-. .. ...
T Consensus 60 lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi--~~l~-dl~pLa~~p~L~~Ltll~Npv~---~k-~~Y 131 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSI--QELG-DLDPLASCPKLEYLTLLGNPVE---HK-KNY 131 (233)
T ss_pred CCCccccceEEecCCc-ceeeccchhhhccccceEEecCcch--hhhh-hcchhccCCccceeeecCCchh---cc-cCc
Confidence 3445556666665554 221 22333378889888855321 1111 1234678999999999664311 11 111
Q ss_pred cc--cCcCCCccEEEEeeeecChhh
Q 014141 354 IS--KHSHQHLKLVELQGFNGREID 376 (430)
Q Consensus 354 ~~--~~~~~~L~~v~i~~~~g~~~e 376 (430)
.. -+..++|+.+.+.+..-.+.+
T Consensus 132 R~yvl~klp~l~~LDF~kVt~~ER~ 156 (233)
T KOG1644|consen 132 RLYVLYKLPSLRTLDFQKVTRKERE 156 (233)
T ss_pred eeEEEEecCcceEeehhhhhHHHHH
Confidence 11 455677777766665444433
No 69
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=76.00 E-value=1.1 Score=24.08 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=12.6
Q ss_pred CCCceEEEeeEEEcchhHHH
Q 014141 164 KSLRSLTLCAVNVTGEVVEF 183 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ 183 (430)
++|++|+|.++.++++.+..
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 67788888877777665544
No 70
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=73.46 E-value=2.2 Score=39.46 Aligned_cols=58 Identities=21% Similarity=0.138 Sum_probs=27.5
Q ss_pred ccCCCceEEEEecceeeecccccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141 277 SYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI 340 (430)
Q Consensus 277 ~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~ 340 (430)
.-.|.++.|.++.+. +....-...+++|++|+|+... ...+.-+=...-|+++|.+..
T Consensus 304 KL~Pkir~L~lS~N~-i~~v~nLa~L~~L~~LDLS~N~-----Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 304 KLAPKLRRLILSQNR-IRTVQNLAELPQLQLLDLSGNL-----LAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhccceeEEeccccc-eeeehhhhhcccceEeecccch-----hHhhhhhHhhhcCEeeeehhh
Confidence 445666666666555 2221112225667777765432 112222223445666666543
No 71
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=72.27 E-value=5 Score=38.61 Aligned_cols=94 Identities=19% Similarity=0.167 Sum_probs=58.6
Q ss_pred CCceeEEEEecceee----eecCCCCCceEEEEEeecCcchhhHHH-HhhccCCCceEEEEecceeeec--ccccCCCCc
Q 014141 232 APNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYLPQLKTLELDGCNEVFA--QFSQREFPK 304 (430)
Q Consensus 232 ~P~L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~-~l~~~~~~l~~L~l~~~~~~~~--~~l~~~~~~ 304 (430)
.|+|+++++++..+. -.+.++..++++.+.-+ .+.++. ..+.++.+|++|+|.++. +.. ++.......
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N----~l~~v~~~~f~~ls~L~tL~L~~N~-it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN----KLEFVSSGMFQGLSGLKTLSLYDNQ-ITTVAPGAFQTLFS 347 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcc----hHHHHHHHhhhccccceeeeecCCe-eEEEecccccccce
Confidence 367788887776443 24556677777776632 233333 677899999999998876 432 111122445
Q ss_pred cceEE-EEEeecCccchhhHHHHHhhC
Q 014141 305 LMNLN-ISFTAANQETLLGLSFIMKAC 330 (430)
Q Consensus 305 L~~L~-l~~~~~~~~~~~~l~~lL~~~ 330 (430)
|.+|. ++..++-.....++...+++-
T Consensus 348 l~~l~l~~Np~~CnC~l~wl~~Wlr~~ 374 (498)
T KOG4237|consen 348 LSTLNLLSNPFNCNCRLAWLGEWLRKK 374 (498)
T ss_pred eeeeehccCcccCccchHHHHHHHhhC
Confidence 66666 455555556777888888743
No 72
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=71.99 E-value=7 Score=36.22 Aligned_cols=97 Identities=18% Similarity=0.167 Sum_probs=55.6
Q ss_pred CceeEEEEecceeee---ecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeec-ccccCCCCccceE
Q 014141 233 PNLLSFKYIGQDINL---HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFA-QFSQREFPKLMNL 308 (430)
Q Consensus 233 P~L~~L~~~~~~~~~---~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~-~~l~~~~~~L~~L 308 (430)
..|+.+++++..+.. +..-.|.++.+.++.+... -+ +-+..+++|..|+++++. +.. .++-..+.|.+.|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~----~v-~nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR----TV-QNLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTL 357 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEecccccee----ee-hhhhhcccceEeecccch-hHhhhhhHhhhcCEeee
Confidence 356677777664432 2223566666666643321 11 225677888999988876 221 2333347888888
Q ss_pred EEEEeecCccchhhHHHHHhhCCCceEEEEEEe
Q 014141 309 NISFTAANQETLLGLSFIMKACPFLEKLVLQIW 341 (430)
Q Consensus 309 ~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~ 341 (430)
.|.... . .-...|+..=+|..|++...
T Consensus 358 ~La~N~-----i-E~LSGL~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 358 KLAQNK-----I-ETLSGLRKLYSLVNLDLSSN 384 (490)
T ss_pred ehhhhh-----H-hhhhhhHhhhhheecccccc
Confidence 884431 1 12244555667788877553
No 73
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=64.56 E-value=11 Score=26.68 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=30.3
Q ss_pred CCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEec
Q 014141 302 FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWN 342 (430)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~ 342 (430)
..+|+.+.+....+...+..-+..+++++|.||++.|....
T Consensus 4 ~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~ 44 (72)
T smart00579 4 LSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVET 44 (72)
T ss_pred hheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeec
Confidence 34577777765444445666688899999999999997753
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=64.08 E-value=2.9 Score=20.52 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=5.4
Q ss_pred CcccceeeccCC
Q 014141 189 PLLENLRITQSP 200 (430)
Q Consensus 189 p~Le~L~L~~~~ 200 (430)
|+|+.|.|.+|.
T Consensus 1 ~~L~~L~l~~n~ 12 (17)
T PF13504_consen 1 PNLRTLDLSNNR 12 (17)
T ss_dssp TT-SEEEETSS-
T ss_pred CccCEEECCCCC
Confidence 345555555553
No 75
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=62.58 E-value=6.6 Score=29.87 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=22.7
Q ss_pred ccCCCCCHHHHHHHHhcCChHHHHH
Q 014141 21 DWFSRFPDDILIHIISGLTLKEAAR 45 (430)
Q Consensus 21 d~is~LPdeiL~~Ils~L~~~d~~r 45 (430)
..|+.||.|+-..|+++|+..|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 6799999999999999999988754
No 76
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=48.80 E-value=4.7 Score=39.38 Aligned_cols=165 Identities=22% Similarity=0.208 Sum_probs=89.8
Q ss_pred CCCCCCceEEEeeEEEcchhHHHHhhcC-CcccceeeccCCCCcee-eEecCCCCcceEEEeecCCccEEEE---eCCce
Q 014141 161 SGIKSLRSLTLCAVNVTGEVVEFFIHNC-PLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEI---SAPNL 235 (430)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~c-p~Le~L~L~~~~~~~~~-~i~~~~~~L~~L~l~~c~~l~~i~i---~~P~L 235 (430)
..++.++.|.+.+..+++ +....... ++|+.|.+.+... ..+ .-...+++|+.|.+.++. +.++.- ..+.|
T Consensus 113 ~~~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L 188 (394)
T COG4886 113 LELTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNL 188 (394)
T ss_pred hcccceeEEecCCccccc--Cccccccchhhcccccccccch-hhhhhhhhccccccccccCCch-hhhhhhhhhhhhhh
Confidence 345778888888887654 22222233 4888888887642 222 122345889999988887 444432 77889
Q ss_pred eEEEEecceeee-ec--CCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeec-ccccCCCCccceEEEE
Q 014141 236 LSFKYIGQDINL-HV--GSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFA-QFSQREFPKLMNLNIS 311 (430)
Q Consensus 236 ~~L~~~~~~~~~-~~--~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~-~~l~~~~~~L~~L~l~ 311 (430)
+.|.+.+..+.. .- +....|..+.+........ ...+..+.++..+.+.... +.. .......++++.|++.
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~----~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL----LSSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDLS 263 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCCcceec----chhhhhcccccccccCCce-eeeccchhccccccceeccc
Confidence 999888875532 11 1233366666664421111 1223444555555543333 211 1122225567777664
Q ss_pred EeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141 312 FTAANQETLLGLSFIMKACPFLEKLVLQI 340 (430)
Q Consensus 312 ~~~~~~~~~~~l~~lL~~~p~L~~L~l~~ 340 (430)
-..- ..+.. +....+++.|++..
T Consensus 264 ~n~i-----~~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 264 NNQI-----SSISS-LGSLTNLRELDLSG 286 (394)
T ss_pred cccc-----ccccc-ccccCccCEEeccC
Confidence 4321 11222 56667888888765
No 77
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=42.57 E-value=3.3 Score=43.01 Aligned_cols=117 Identities=17% Similarity=0.301 Sum_probs=0.0
Q ss_pred CCCCCCCCCCceEEEeeEE--------------------EcchhHHHHhhcC----------------------------
Q 014141 157 GCGLSGIKSLRSLTLCAVN--------------------VTGEVVEFFIHNC---------------------------- 188 (430)
Q Consensus 157 p~~~~~~~~L~~L~L~~~~--------------------~~~~~l~~ll~~c---------------------------- 188 (430)
|-....|.+|+.|.|.+|. -.-+.+..++++|
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~ 181 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE 181 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH
Q ss_pred -----CcccceeeccCCCCceeeEecCCCCcceEEEeecC--CccEEEEeCCceeEEEEecceee--eecCCCCCceEEE
Q 014141 189 -----PLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCY--SIKEIEISAPNLLSFKYIGQDIN--LHVGSLPQLVDVV 259 (430)
Q Consensus 189 -----p~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~--~l~~i~i~~P~L~~L~~~~~~~~--~~~~~~~~L~~~~ 259 (430)
|.||.|+|... .++.+....-|+.||+|++.... -+..+...+-.|..|.+.++... .-+.+..+|..+.
T Consensus 182 SLqll~ale~LnLshN-k~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LD 260 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHN-KFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLD 260 (1096)
T ss_pred HHHHHHHhhhhccchh-hhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccc
Q ss_pred EEeecCcchhhHHHHhhccCCCceEE
Q 014141 260 FHVTPMVQKMHCIGSIVSYLPQLKTL 285 (430)
Q Consensus 260 i~~~~~~~~~~~~~~l~~~~~~l~~L 285 (430)
+.+ +++...+.|+-|
T Consensus 261 lsy-----------Nll~~hseL~pL 275 (1096)
T KOG1859|consen 261 LSY-----------NLLSEHSELEPL 275 (1096)
T ss_pred hhH-----------hhhhcchhhhHH
No 78
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=37.20 E-value=29 Score=18.06 Aligned_cols=11 Identities=45% Similarity=0.721 Sum_probs=7.1
Q ss_pred CceEEEEecce
Q 014141 281 QLKTLELDGCN 291 (430)
Q Consensus 281 ~l~~L~l~~~~ 291 (430)
+|+.|+++++.
T Consensus 1 ~L~~Ldls~n~ 11 (22)
T PF00560_consen 1 NLEYLDLSGNN 11 (22)
T ss_dssp TESEEEETSSE
T ss_pred CccEEECCCCc
Confidence 36677776664
No 79
>PLN03150 hypothetical protein; Provisional
Probab=35.11 E-value=20 Score=37.60 Aligned_cols=68 Identities=18% Similarity=0.191 Sum_probs=50.0
Q ss_pred CCCCCCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee-EecCCCCcceEEEeecC
Q 014141 155 QSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFCY 223 (430)
Q Consensus 155 ~~p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~-i~~~~~~L~~L~l~~c~ 223 (430)
.+|..+..+++|+.|+|.+..+.+. +...+..++.|+.|+|.++.....+. .-..+++|+.|.+.++.
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence 4566777899999999999877542 44447889999999999985433221 12356889999998765
No 80
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=31.19 E-value=39 Score=30.80 Aligned_cols=49 Identities=10% Similarity=0.268 Sum_probs=36.5
Q ss_pred cccCCCCCHHHHHHHHhcCC-hHHHHHHHHhhhhh------hhhcccCceeeecCC
Q 014141 20 EDWFSRFPDDILIHIISGLT-LKEAARTSVLSSRW------KYLWTFTTSLDFDKK 68 (430)
Q Consensus 20 ~d~is~LPdeiL~~Ils~L~-~~d~~rts~vSrrW------r~lw~~~~~l~~~~~ 68 (430)
+-.+.+||.|++..|+-+|+ -+|++.++.+-..- +.+|..+-...|..+
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~er 254 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNER 254 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45689999999999999998 78888888764443 345776655555554
No 81
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=30.20 E-value=18 Score=35.71 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=19.2
Q ss_pred CCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccC
Q 014141 162 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQS 199 (430)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~ 199 (430)
.|.+|+.|.|.+-.+.. +..++..|++|+.|.|.+.
T Consensus 93 ~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N 128 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFN 128 (414)
T ss_pred cccceeeeeccccchhh--cccchhhhhcchheecccc
Confidence 45556666665554422 2222455666666666654
No 82
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=25.72 E-value=14 Score=34.54 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhhccc
Q 014141 23 FSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTF 59 (430)
Q Consensus 23 is~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~lw~~ 59 (430)
+..+|+++++.|++++.-+++.+++.+|+|-..+=..
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~ 44 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSH 44 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhc
Confidence 4568999999999999999999999999999875333
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=24.14 E-value=39 Score=18.85 Aligned_cols=20 Identities=30% Similarity=0.272 Sum_probs=14.9
Q ss_pred CCCceEEEeeEEEcchhHHH
Q 014141 164 KSLRSLTLCAVNVTGEVVEF 183 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ 183 (430)
++|+.|+|.+..+.++....
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~ 21 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARA 21 (28)
T ss_pred CccCEEECCCCCCCHHHHHH
Confidence 67889999988887755433
No 84
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=23.35 E-value=60 Score=30.76 Aligned_cols=38 Identities=8% Similarity=0.342 Sum_probs=31.1
Q ss_pred ccCCCCCHHHHHHHHhcCCh--------HHHHHHHHhhhhhhhhcc
Q 014141 21 DWFSRFPDDILIHIISGLTL--------KEAARTSVLSSRWKYLWT 58 (430)
Q Consensus 21 d~is~LPdeiL~~Ils~L~~--------~d~~rts~vSrrWr~lw~ 58 (430)
..+.+||.+.|..|+.+..- +..+.++-+|+.|++.-.
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~ 88 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISK 88 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhcc
Confidence 47789999999999999862 356788899999998643
No 85
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=22.41 E-value=2.9e+02 Score=25.55 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=27.3
Q ss_pred HHHHHHHhcccccccEEEecCCCchhhHHHHHHhhccccCCCccEEEEeccC
Q 014141 378 ELAFYVFENATMLEKMIIKPSGSRKRTTLKNSTNMLKAKLPRGVKLTVGSCD 429 (430)
Q Consensus 378 ~l~~~ll~~a~~Le~m~i~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~ 429 (430)
.+++..++--+.|++++|+......-.+.++.+ .+..++.||++.+|+
T Consensus 152 ~hi~ih~~~~pslreVrIwnht~e~A~~la~~l----sk~~~~iqie~~~~q 199 (333)
T KOG3007|consen 152 WHIYIHIKLIPSLREVRIWNHTNEMALDLAKSL----SKLFSNIQIELNQYQ 199 (333)
T ss_pred HHHHHHHHhcccceEEEeecCChHHHHHHHHHh----hhcccceEEEEEehh
Confidence 444444444566777777766544433333333 333577777777764
Done!