Query 014141
Match_columns 430
No_of_seqs 148 out of 1654
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 06:12:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 99.8 2E-20 6.8E-25 191.9 18.0 152 20-200 3-167 (594)
2 3ogk_B Coronatine-insensitive 99.8 2.1E-19 7E-24 184.3 20.8 101 20-136 6-122 (592)
3 2ast_B S-phase kinase-associat 99.7 4.2E-18 1.4E-22 162.0 4.8 267 20-370 6-282 (336)
4 3ogk_B Coronatine-insensitive 98.9 1.6E-09 5.6E-14 110.5 5.9 34 166-199 140-174 (592)
5 1fs1_A SKP2 F-BOX, cyclin A/CD 98.9 1.4E-09 4.8E-14 72.8 3.6 38 20-57 6-43 (53)
6 2p1m_B Transport inhibitor res 98.8 1.7E-09 5.7E-14 110.5 4.3 82 162-243 103-194 (594)
7 4fcg_A Uncharacterized protein 98.8 1.6E-08 5.4E-13 95.5 9.8 168 160-340 100-286 (328)
8 2z80_A TOLL-like receptor 2, v 98.6 9.5E-07 3.3E-11 83.9 15.9 215 158-386 94-329 (353)
9 4fmz_A Internalin; leucine ric 98.6 7.9E-08 2.7E-12 91.2 7.4 213 160-399 106-322 (347)
10 2ca6_A RAN GTPase-activating p 98.5 1.4E-08 4.8E-13 98.0 1.1 206 160-371 56-314 (386)
11 1z7x_W Ribonuclease inhibitor; 98.4 6.5E-08 2.2E-12 95.4 3.2 232 161-398 53-323 (461)
12 4fcg_A Uncharacterized protein 98.4 3.6E-08 1.2E-12 93.0 0.8 219 88-339 72-309 (328)
13 4fmz_A Internalin; leucine ric 98.4 2.3E-07 7.7E-12 88.0 6.3 211 160-399 84-298 (347)
14 2z80_A TOLL-like receptor 2, v 98.4 2.1E-06 7.2E-11 81.5 12.3 167 164-341 52-232 (353)
15 1o6v_A Internalin A; bacterial 98.4 8.4E-07 2.9E-11 87.8 9.3 35 358-398 307-341 (466)
16 1z7x_W Ribonuclease inhibitor; 98.4 3E-07 1E-11 90.6 5.7 173 165-340 86-293 (461)
17 1o6v_A Internalin A; bacterial 98.3 9.5E-07 3.3E-11 87.4 9.1 209 160-398 86-297 (466)
18 1h6u_A Internalin H; cell adhe 98.3 4E-07 1.4E-11 85.0 5.0 166 160-342 59-228 (308)
19 2ast_B S-phase kinase-associat 98.3 5.5E-08 1.9E-12 91.8 -1.2 167 161-334 115-299 (336)
20 2z66_A Variable lymphocyte rec 98.3 9.6E-07 3.3E-11 82.1 6.8 210 160-383 48-273 (306)
21 3o53_A Protein LRIM1, AGAP0063 98.2 1.4E-06 4.7E-11 81.6 7.1 244 113-396 19-270 (317)
22 1h6u_A Internalin H; cell adhe 98.2 1.1E-06 3.7E-11 82.0 5.9 186 162-371 39-228 (308)
23 2z81_A CD282 antigen, TOLL-lik 98.2 5.7E-06 1.9E-10 83.4 11.4 221 164-397 26-260 (549)
24 2z81_A CD282 antigen, TOLL-lik 98.1 2.7E-05 9.3E-10 78.4 14.2 179 158-342 68-262 (549)
25 3rgz_A Protein brassinosteroid 98.1 1.7E-06 5.8E-11 91.1 5.4 222 157-398 93-353 (768)
26 3oja_A Leucine-rich immune mol 98.1 2.6E-06 8.8E-11 84.8 5.9 224 113-373 19-250 (487)
27 3rgz_A Protein brassinosteroid 98.1 2.6E-07 8.9E-12 97.3 -1.6 213 161-398 148-378 (768)
28 4ezg_A Putative uncharacterize 98.1 3.2E-06 1.1E-10 73.1 5.7 58 162-223 42-99 (197)
29 3o53_A Protein LRIM1, AGAP0063 98.1 4.8E-06 1.6E-10 77.8 7.2 212 162-399 32-248 (317)
30 3oja_A Leucine-rich immune mol 98.1 1.2E-06 4.1E-11 87.2 3.1 160 160-341 76-247 (487)
31 1ozn_A Reticulon 4 receptor; N 98.1 2.6E-06 8.9E-11 78.3 5.0 62 160-222 52-115 (285)
32 4ecn_A Leucine-rich repeat pro 98.1 3.4E-07 1.2E-11 97.0 -1.3 149 156-312 440-628 (876)
33 2z63_A TOLL-like receptor 4, v 98.0 8E-06 2.7E-10 82.6 8.1 128 155-291 296-432 (570)
34 3zyi_A Leucine-rich repeat-con 98.0 1.8E-06 6.2E-11 85.0 3.1 81 159-242 94-180 (452)
35 2ra8_A Uncharacterized protein 98.0 5.2E-06 1.8E-10 79.0 5.8 119 114-241 95-227 (362)
36 2ca6_A RAN GTPase-activating p 98.0 8.6E-07 2.9E-11 85.4 0.3 180 161-341 91-313 (386)
37 3vq2_A TLR4, TOLL-like recepto 98.0 4.1E-06 1.4E-10 85.6 5.1 97 159-261 302-407 (606)
38 3o6n_A APL1; leucine-rich repe 98.0 1.8E-06 6.3E-11 83.1 2.3 97 233-340 205-304 (390)
39 3t6q_A CD180 antigen; protein- 98.0 4.1E-06 1.4E-10 85.6 4.9 133 155-291 292-436 (606)
40 1ozn_A Reticulon 4 receptor; N 98.0 2.9E-06 1E-10 77.9 3.3 205 163-383 31-250 (285)
41 3zyj_A Leucine-rich repeat-con 98.0 6.5E-06 2.2E-10 80.7 6.0 206 159-384 83-305 (440)
42 3vq2_A TLR4, TOLL-like recepto 98.0 2E-06 7E-11 87.8 2.1 123 160-291 281-410 (606)
43 3zyi_A Leucine-rich repeat-con 97.9 7.1E-06 2.4E-10 80.7 5.6 123 164-291 75-207 (452)
44 3l2o_B F-box only protein 4; s 97.9 1.7E-06 6E-11 77.9 1.1 34 23-56 5-38 (312)
45 2e31_A FBS1, F-box only protei 97.9 4E-06 1.4E-10 76.4 3.1 36 21-56 49-85 (297)
46 1h6t_A Internalin B; cell adhe 97.9 3.4E-06 1.2E-10 77.9 2.7 148 159-341 63-210 (291)
47 2id5_A Lingo-1, leucine rich r 97.9 8.8E-06 3E-10 80.5 5.8 174 159-341 147-330 (477)
48 3e4g_A ATP synthase subunit S, 97.9 5.5E-06 1.9E-10 69.8 3.6 38 165-203 62-99 (176)
49 3v47_A TOLL-like receptor 5B a 97.9 5.5E-06 1.9E-10 81.4 4.3 62 274-340 293-356 (455)
50 3e4g_A ATP synthase subunit S, 97.9 1.8E-06 6.3E-11 72.7 0.7 66 161-226 82-153 (176)
51 3oja_B Anopheles plasmodium-re 97.9 2.4E-06 8.2E-11 87.3 1.4 81 276-370 274-355 (597)
52 3o6n_A APL1; leucine-rich repe 97.9 1.9E-05 6.5E-10 75.9 7.4 191 160-370 137-349 (390)
53 2id5_A Lingo-1, leucine rich r 97.9 2.9E-05 9.8E-10 76.8 8.8 39 160-199 76-114 (477)
54 3bz5_A Internalin-J, INLJ; leu 97.9 7.2E-06 2.5E-10 80.8 4.3 160 160-341 81-243 (457)
55 1h6t_A Internalin B; cell adhe 97.9 1E-05 3.6E-10 74.6 5.1 79 160-243 86-166 (291)
56 3zyj_A Leucine-rich repeat-con 97.9 2.6E-06 8.9E-11 83.5 1.1 61 161-222 133-195 (440)
57 4eco_A Uncharacterized protein 97.8 7.8E-07 2.7E-11 91.6 -3.6 173 156-340 198-411 (636)
58 4glp_A Monocyte differentiatio 97.8 2.2E-06 7.6E-11 79.8 -0.2 190 115-340 80-281 (310)
59 2z63_A TOLL-like receptor 4, v 97.8 1.5E-05 5E-10 80.7 5.8 126 157-291 275-407 (570)
60 1m9s_A Internalin B; cell inva 97.8 9.4E-06 3.2E-10 82.7 4.3 123 159-291 60-186 (605)
61 2ell_A Acidic leucine-rich nuc 97.8 3.5E-06 1.2E-10 70.8 0.9 126 163-290 23-157 (168)
62 1wwl_A Monocyte differentiatio 97.8 4.1E-06 1.4E-10 78.1 1.3 40 161-200 118-160 (312)
63 2z66_A Variable lymphocyte rec 97.8 6.9E-06 2.4E-10 76.2 2.7 216 163-398 27-258 (306)
64 3goz_A Leucine-rich repeat-con 97.8 4.7E-06 1.6E-10 79.5 1.5 36 165-200 52-91 (362)
65 1wwl_A Monocyte differentiatio 97.8 1.8E-06 6E-11 80.6 -1.5 192 162-369 93-305 (312)
66 1m9s_A Internalin B; cell inva 97.8 6.1E-06 2.1E-10 84.1 2.3 164 161-341 40-207 (605)
67 3oja_B Anopheles plasmodium-re 97.8 2.3E-05 8E-10 79.9 6.6 40 160-200 143-182 (597)
68 3rfs_A Internalin B, repeat mo 97.8 8E-06 2.7E-10 74.5 2.7 61 159-223 58-120 (272)
69 1ogq_A PGIP-2, polygalacturona 97.8 7.5E-06 2.6E-10 76.4 2.4 40 159-199 96-135 (313)
70 3g06_A SSPH2 (leucine-rich rep 97.8 4E-05 1.4E-09 78.3 7.8 193 162-398 79-271 (622)
71 3t6q_A CD180 antigen; protein- 97.8 1E-05 3.4E-10 82.7 3.3 172 159-340 273-458 (606)
72 3v47_A TOLL-like receptor 5B a 97.8 5.1E-06 1.7E-10 81.6 1.0 84 159-244 74-165 (455)
73 3goz_A Leucine-rich repeat-con 97.7 6.9E-06 2.4E-10 78.3 1.7 201 164-371 22-264 (362)
74 2xwt_C Thyrotropin receptor; s 97.7 9.1E-05 3.1E-09 65.9 8.7 187 164-369 31-235 (239)
75 4ecn_A Leucine-rich repeat pro 97.7 1.8E-06 6.2E-11 91.4 -3.1 37 162-200 546-584 (876)
76 1ogq_A PGIP-2, polygalacturona 97.7 6E-06 2.1E-10 77.1 0.8 195 157-369 69-277 (313)
77 2z7x_B TOLL-like receptor 1, v 97.7 5.3E-05 1.8E-09 75.7 7.6 215 160-398 216-478 (520)
78 1p9a_G Platelet glycoprotein I 97.7 1.4E-05 4.7E-10 73.7 2.9 58 164-223 31-88 (290)
79 4ezg_A Putative uncharacterize 97.7 5.6E-05 1.9E-09 65.2 6.4 62 159-223 61-123 (197)
80 2o6q_A Variable lymphocyte rec 97.7 1.9E-05 6.7E-10 71.8 3.5 58 164-223 37-96 (270)
81 4glp_A Monocyte differentiatio 97.7 7.8E-06 2.7E-10 76.1 0.8 217 163-398 63-304 (310)
82 3g06_A SSPH2 (leucine-rich rep 97.7 1.4E-05 4.8E-10 81.6 2.7 56 277-340 238-293 (622)
83 3bz5_A Internalin-J, INLJ; leu 97.7 3E-05 1E-09 76.3 5.0 135 161-309 124-260 (457)
84 1xku_A Decorin; proteoglycan, 97.7 5E-05 1.7E-09 71.2 6.1 99 159-261 71-179 (330)
85 2z62_A TOLL-like receptor 4, v 97.6 2E-05 6.7E-10 71.9 2.2 123 164-291 28-160 (276)
86 3rfs_A Internalin B, repeat mo 97.6 4.1E-05 1.4E-09 69.7 4.3 166 162-340 39-214 (272)
87 3v7d_B Cell division control p 97.6 1.8E-05 6.1E-10 77.6 1.9 38 20-57 12-49 (464)
88 2je0_A Acidic leucine-rich nuc 97.6 4.2E-06 1.4E-10 68.8 -2.3 61 162-223 15-75 (149)
89 2z7x_B TOLL-like receptor 1, v 97.6 0.001 3.4E-08 66.3 14.6 97 164-263 21-125 (520)
90 2z62_A TOLL-like receptor 4, v 97.6 2.5E-05 8.6E-10 71.2 2.4 172 159-340 47-233 (276)
91 1xeu_A Internalin C; cellular 97.5 9.2E-05 3.1E-09 67.1 5.1 36 161-199 60-95 (263)
92 3j0a_A TOLL-like receptor 5; m 97.5 5.7E-05 1.9E-09 80.3 4.3 101 158-261 284-389 (844)
93 3j0a_A TOLL-like receptor 5; m 97.5 0.00043 1.5E-08 73.5 10.9 40 160-199 119-158 (844)
94 1ziw_A TOLL-like receptor 3; i 97.4 4.7E-05 1.6E-09 78.8 2.6 123 164-291 381-515 (680)
95 2ft3_A Biglycan; proteoglycan, 97.4 3.3E-05 1.1E-09 72.5 1.3 81 159-243 73-157 (332)
96 2xwt_C Thyrotropin receptor; s 97.4 0.00011 3.7E-09 65.4 4.6 166 159-339 50-234 (239)
97 1xku_A Decorin; proteoglycan, 97.4 0.00011 3.6E-09 68.9 4.3 166 164-340 52-225 (330)
98 2o6q_A Variable lymphocyte rec 97.3 0.00011 3.6E-09 66.9 3.8 63 159-223 56-120 (270)
99 2ovr_B FBW7, F-BOX/WD repeat p 97.3 9.5E-05 3.2E-09 72.1 3.5 37 20-56 16-52 (445)
100 1p22_A F-BOX/WD-repeat protein 97.3 5.9E-05 2E-09 73.4 1.9 36 20-55 8-47 (435)
101 1a9n_A U2A', U2A'; complex (nu 97.3 4.3E-05 1.5E-09 64.6 0.7 60 161-223 16-75 (176)
102 4eco_A Uncharacterized protein 97.3 0.00014 4.9E-09 74.6 4.1 175 155-340 264-466 (636)
103 3a79_B TLR6, VLRB.59, TOLL-lik 97.2 0.00082 2.8E-08 67.8 9.2 82 159-244 71-157 (562)
104 1p9a_G Platelet glycoprotein I 97.2 0.00017 5.9E-09 66.3 3.2 162 159-331 50-224 (290)
105 1jl5_A Outer protein YOPM; leu 97.1 0.00024 8.2E-09 69.8 4.1 153 164-341 215-367 (454)
106 1ziw_A TOLL-like receptor 3; i 97.1 0.00023 7.7E-09 73.6 3.1 175 157-339 398-592 (680)
107 3un9_A NLR family member X1; l 97.0 3.6E-05 1.2E-09 73.5 -3.0 163 164-340 72-248 (372)
108 2ft3_A Biglycan; proteoglycan, 97.0 9.7E-05 3.3E-09 69.3 -0.2 100 163-265 53-159 (332)
109 3a79_B TLR6, VLRB.59, TOLL-lik 97.0 0.0017 5.7E-08 65.5 8.7 119 164-291 52-180 (562)
110 1jl5_A Outer protein YOPM; leu 97.0 0.00045 1.5E-08 67.8 4.2 158 159-341 190-347 (454)
111 1xeu_A Internalin C; cellular 96.9 0.00033 1.1E-08 63.4 2.6 143 161-314 38-183 (263)
112 3m19_A Variable lymphocyte rec 96.9 0.00048 1.6E-08 61.7 3.5 122 164-291 35-166 (251)
113 3cvr_A Invasion plasmid antige 96.9 0.00043 1.5E-08 69.8 3.3 72 163-243 99-170 (571)
114 2ell_A Acidic leucine-rich nuc 96.9 0.00059 2E-08 56.9 3.7 131 187-342 22-158 (168)
115 3m19_A Variable lymphocyte rec 96.7 0.0005 1.7E-08 61.6 1.9 127 159-291 54-190 (251)
116 1ds9_A Outer arm dynein; leuci 96.7 2.2E-05 7.5E-10 67.9 -6.9 36 161-199 45-80 (198)
117 2o6s_A Variable lymphocyte rec 96.7 0.00044 1.5E-08 59.9 1.3 144 163-340 27-174 (208)
118 3cvr_A Invasion plasmid antige 96.6 0.0011 3.8E-08 66.8 3.8 154 163-340 79-239 (571)
119 2je0_A Acidic leucine-rich nuc 96.5 0.00043 1.5E-08 56.4 0.3 127 187-338 15-147 (149)
120 4ay9_X Follicle-stimulating ho 96.5 0.0029 9.8E-08 59.6 5.8 58 275-340 197-255 (350)
121 4g8a_A TOLL-like receptor 4; l 96.5 0.012 4E-07 59.8 10.6 58 164-223 52-111 (635)
122 1a9n_A U2A', U2A'; complex (nu 96.3 0.0034 1.2E-07 52.7 4.5 131 186-341 16-150 (176)
123 2o6s_A Variable lymphocyte rec 96.2 0.00055 1.9E-08 59.3 -0.9 62 160-223 48-111 (208)
124 3e6j_A Variable lymphocyte rec 96.2 0.0013 4.6E-08 57.9 1.5 142 164-329 40-187 (229)
125 2v70_A SLIT-2, SLIT homolog 2 96.1 0.0016 5.5E-08 57.0 1.6 144 164-329 32-180 (220)
126 3sb4_A Hypothetical leucine ri 96.1 0.0088 3E-07 55.7 6.7 93 99-199 27-134 (329)
127 1ds9_A Outer arm dynein; leuci 96.0 0.00023 7.9E-09 61.3 -4.2 149 164-337 18-180 (198)
128 2v9t_B SLIT homolog 2 protein 95.9 0.0032 1.1E-07 55.1 2.4 145 164-331 32-181 (220)
129 4g8a_A TOLL-like receptor 4; l 95.8 0.017 5.7E-07 58.7 7.7 103 159-264 71-184 (635)
130 2xot_A Amphoterin-induced prot 95.7 0.0039 1.4E-07 59.0 2.3 125 164-291 39-174 (361)
131 4ay9_X Follicle-stimulating ho 95.6 0.0087 3E-07 56.3 4.6 80 164-245 30-116 (350)
132 1dce_A Protein (RAB geranylger 95.5 0.0023 7.7E-08 64.6 -0.0 102 165-291 442-544 (567)
133 1io0_A Tropomodulin; LRR prote 95.3 0.003 1E-07 53.7 -0.1 20 180-199 27-46 (185)
134 2ra8_A Uncharacterized protein 95.3 0.17 5.9E-06 47.6 12.1 11 232-242 138-148 (362)
135 3e6j_A Variable lymphocyte rec 95.1 0.023 8E-07 49.8 5.4 126 249-390 60-192 (229)
136 3un9_A NLR family member X1; l 95.0 0.0017 5.8E-08 61.8 -2.6 36 164-199 101-136 (372)
137 2v9t_B SLIT homolog 2 protein 94.8 0.05 1.7E-06 47.3 6.6 87 249-343 76-164 (220)
138 1w8a_A SLIT protein; signaling 94.5 0.018 6E-07 49.0 2.7 59 164-223 29-89 (192)
139 1dce_A Protein (RAB geranylger 94.3 0.018 6.1E-07 58.0 2.8 151 159-337 404-566 (567)
140 1io0_A Tropomodulin; LRR prote 93.8 0.027 9.2E-07 47.6 2.5 122 272-399 28-162 (185)
141 2v70_A SLIT-2, SLIT homolog 2 93.4 0.019 6.4E-07 50.0 0.7 81 160-243 53-139 (220)
142 2wfh_A SLIT homolog 2 protein 93.0 0.029 9.8E-07 47.8 1.4 106 163-291 30-137 (193)
143 2xot_A Amphoterin-induced prot 92.6 0.13 4.5E-06 48.3 5.5 143 188-340 38-198 (361)
144 2o6r_A Variable lymphocyte rec 92.6 0.032 1.1E-06 46.6 1.0 59 163-223 27-87 (177)
145 4b8c_D Glucose-repressible alc 91.8 0.027 9.3E-07 58.5 -0.5 104 159-266 219-329 (727)
146 2o6r_A Variable lymphocyte rec 91.7 0.043 1.5E-06 45.7 0.8 63 159-223 47-111 (177)
147 2wfh_A SLIT homolog 2 protein 91.1 0.044 1.5E-06 46.6 0.2 65 157-223 47-113 (193)
148 4b8c_D Glucose-repressible alc 89.6 0.056 1.9E-06 56.1 -0.4 104 182-291 217-327 (727)
149 1w8a_A SLIT protein; signaling 89.6 0.14 4.7E-06 43.4 2.0 62 160-223 50-113 (192)
150 4fdw_A Leucine rich hypothetic 88.3 0.9 3.1E-05 43.3 7.1 156 165-338 158-330 (401)
151 2r9u_A Variable lymphocyte rec 87.1 0.17 5.9E-06 42.0 1.0 57 164-222 33-91 (174)
152 3g39_A Variable lymphocyte rec 85.6 0.26 9E-06 40.6 1.4 78 164-244 30-113 (170)
153 2r9u_A Variable lymphocyte rec 84.2 0.35 1.2E-05 40.1 1.5 42 158-200 51-92 (174)
154 3sb4_A Hypothetical leucine ri 83.3 1.1 3.6E-05 41.3 4.6 104 164-291 202-308 (329)
155 2ifg_A High affinity nerve gro 82.7 0.38 1.3E-05 44.7 1.3 65 156-223 24-91 (347)
156 4fdw_A Leucine rich hypothetic 82.4 3.1 0.00011 39.5 7.6 167 159-341 175-355 (401)
157 1pgv_A TMD-1, tropomodulin TMD 81.2 1.2 4.2E-05 37.7 3.8 123 272-399 33-168 (197)
158 3rw6_A Nuclear RNA export fact 80.8 0.34 1.2E-05 43.4 0.2 38 162-199 168-206 (267)
159 3g39_A Variable lymphocyte rec 80.0 2 6.9E-05 35.1 4.7 81 249-333 50-134 (170)
160 3rw6_A Nuclear RNA export fact 72.4 1.3 4.6E-05 39.5 1.6 63 274-337 190-257 (267)
161 2ifg_A High affinity nerve gro 64.2 2 6.9E-05 39.6 1.1 63 159-223 51-114 (347)
162 4fs7_A Uncharacterized protein 51.0 8.1 0.00028 36.3 2.9 92 185-285 293-393 (394)
163 4gt6_A Cell surface protein; l 50.9 9.1 0.00031 35.9 3.2 72 233-310 311-385 (394)
164 4gt6_A Cell surface protein; l 36.0 18 0.00061 33.9 2.6 118 159-290 260-388 (394)
165 1pgv_A TMD-1, tropomodulin TMD 32.2 25 0.00086 29.5 2.6 135 250-387 38-183 (197)
166 4fs7_A Uncharacterized protein 26.0 28 0.00097 32.4 2.1 92 159-258 292-393 (394)
167 4h09_A Hypothetical leucine ri 24.6 16 0.00054 33.9 -0.0 39 248-289 281-319 (379)
168 2kwv_A RAD30 homolog B, DNA po 23.5 50 0.0017 20.2 2.1 22 17-38 15-36 (48)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=2e-20 Score=191.91 Aligned_cols=152 Identities=14% Similarity=0.206 Sum_probs=91.3
Q ss_pred cccCCCCCHHHHHHHHhcCC-hHHHHHHHHhhhhhhhhcc-cCceeeecCCccccCCCCchhHhHHHHHHHHHHhhcCCC
Q 014141 20 EDWFSRFPDDILIHIISGLT-LKEAARTSVLSSRWKYLWT-FTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRGS 97 (430)
Q Consensus 20 ~d~is~LPdeiL~~Ils~L~-~~d~~rts~vSrrWr~lw~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~ 97 (430)
.|+|++||||||.+||+||+ .+|++++++|||||+++.. ....+++... ... .. ...+... +
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~-~~~------~~-------~~~~~~~--~ 66 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNC-YAV------SP-------ATVIRRF--P 66 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESST-TSS------CH-------HHHHHHC--T
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccc-ccc------CH-------HHHHhhC--C
Confidence 58999999999999999999 9999999999999998721 2223444332 110 01 1222222 3
Q ss_pred ceeEEEEEEecC--------CCCCccHhHHHHHHhh--cCcEEEEEEcCCCCCCCceeeccccccccCCCCCCCCCCCCc
Q 014141 98 RINQFRICFRLD--------AKHKCNITNWVNTAIA--KNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLR 167 (430)
Q Consensus 98 ~l~~l~l~~~~~--------~~~~~~v~~wl~~~~~--~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~~p~~~~~~~~L~ 167 (430)
.++++.+..... ......+..|+..... .++++|++............+. .++++|+
T Consensus 67 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~-------------~~~~~L~ 133 (594)
T 2p1m_B 67 KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIA-------------KSFKNFK 133 (594)
T ss_dssp TCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHH-------------HHCTTCC
T ss_pred CceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHH-------------HhCCCCc
Confidence 488888866311 0122456778887654 4899999876532110001110 1457888
Q ss_pred eEEEeeE-EEcchhHHHHhhcCCcccceeeccCC
Q 014141 168 SLTLCAV-NVTGEVVEFFIHNCPLLENLRITQSP 200 (430)
Q Consensus 168 ~L~L~~~-~~~~~~l~~ll~~cp~Le~L~L~~~~ 200 (430)
+|+|.++ .+++..+..++.+||+|++|+|.+|.
T Consensus 134 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 134 VLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp EEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred EEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 8888877 56666677777778888888877764
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=2.1e-19 Score=184.34 Aligned_cols=101 Identities=11% Similarity=0.197 Sum_probs=60.8
Q ss_pred cccCC----CCCHHHHHHHHhcC-ChHHHHHHHHhhhhhhhhcccCc-eeeecCCccccCCCCchhHhHHHHHHHHHHhh
Q 014141 20 EDWFS----RFPDDILIHIISGL-TLKEAARTSVLSSRWKYLWTFTT-SLDFDKKVKYMSFPPDYQQSKYISWVNKVLEL 93 (430)
Q Consensus 20 ~d~is----~LPdeiL~~Ils~L-~~~d~~rts~vSrrWr~lw~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 93 (430)
.|+++ +||||+|.+||+|| +.+|++++++|||||++++...+ .+.+. . .+. ..+..++..
T Consensus 6 ~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~-~-~~~------------~~~~~~~~~ 71 (592)
T 3ogk_B 6 IKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMA-L-CYT------------ATPDRLSRR 71 (592)
T ss_dssp ------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEES-C-GGG------------SCHHHHHHH
T ss_pred hhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEe-e-ccc------------cChHHHHHh
Confidence 45555 89999999999999 79999999999999999854332 12221 1 111 112233333
Q ss_pred cCCCceeEEEEEEecC--------CCCCccHhHHHHHHhh--cCcEEEEEEcC
Q 014141 94 HRGSRINQFRICFRLD--------AKHKCNITNWVNTAIA--KNVRNFELDLS 136 (430)
Q Consensus 94 ~~~~~l~~l~l~~~~~--------~~~~~~v~~wl~~~~~--~~v~~L~l~~~ 136 (430)
.+. ++++.+..... ....+....|+..... +++++|++...
T Consensus 72 ~~~--L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 122 (592)
T 3ogk_B 72 FPN--LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM 122 (592)
T ss_dssp CTT--CSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC
T ss_pred CCC--CeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc
Confidence 333 88888865211 1223445567766553 47888887654
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=4.2e-18 Score=162.01 Aligned_cols=267 Identities=17% Similarity=0.194 Sum_probs=147.5
Q ss_pred cccCCCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhhcc---cCceeeecCCccccCCCCchhHhHHHHHHHHHHhhcCC
Q 014141 20 EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWT---FTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRG 96 (430)
Q Consensus 20 ~d~is~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~lw~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 96 (430)
...|++||||++.+||++|+.+|+++++.|||+|+++.. ....+++... .+.
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~-~~~------------------------ 60 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGK-NLH------------------------ 60 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTC-BCC------------------------
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccc-cCC------------------------
Confidence 355899999999999999999999999999999999842 1223444333 111
Q ss_pred CceeEEEEEEecCCCCCccHhHHHHHHhhcCcEEEEEEcCCCCCCCceeeccccccccCCCCCCCCCCCCceEEEeeEEE
Q 014141 97 SRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNV 176 (430)
Q Consensus 97 ~~l~~l~l~~~~~~~~~~~v~~wl~~~~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~~p~~~~~~~~L~~L~L~~~~~ 176 (430)
...+......+++.+++....-. ..++.+.++++|++|+|.++.+
T Consensus 61 --------------------~~~~~~~~~~~l~~L~l~~n~l~---------------~~~~~~~~~~~L~~L~L~~~~l 105 (336)
T 2ast_B 61 --------------------PDVTGRLLSQGVIAFRCPRSFMD---------------QPLAEHFSPFRVQHMDLSNSVI 105 (336)
T ss_dssp --------------------HHHHHHHHHTTCSEEECTTCEEC---------------SCCCSCCCCBCCCEEECTTCEE
T ss_pred --------------------HHHHHhhhhccceEEEcCCcccc---------------ccchhhccCCCCCEEEccCCCc
Confidence 11122222233444433211000 0111234679999999999988
Q ss_pred cchhHHHHhhcCCcccceeeccCCCCce-eeEecCCCCcceEEEeecCCccEEEEeCCceeEEEEecceeeeecCCCCCc
Q 014141 177 TGEVVEFFIHNCPLLENLRITQSPDLLS-LKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQL 255 (430)
Q Consensus 177 ~~~~l~~ll~~cp~Le~L~L~~~~~~~~-~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~~~~~~~~~~~~~L 255 (430)
++..+..++..||+|++|.|.+|..... ...-+.+++|+.|.+.+|..+... ..+..+.++++|
T Consensus 106 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~---------------~l~~~~~~~~~L 170 (336)
T 2ast_B 106 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF---------------ALQTLLSSCSRL 170 (336)
T ss_dssp CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH---------------HHHHHHHHCTTC
T ss_pred CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH---------------HHHHHHhcCCCC
Confidence 8777888889999999999998853211 111134678888888877422210 001112234444
Q ss_pred eEEEEEee-cCcchhhHHHHhhccCC-CceEEEEecce-eeecccccC---CCCccceEEEEEeecCccchhhHHHHHhh
Q 014141 256 VDVVFHVT-PMVQKMHCIGSIVSYLP-QLKTLELDGCN-EVFAQFSQR---EFPKLMNLNISFTAANQETLLGLSFIMKA 329 (430)
Q Consensus 256 ~~~~i~~~-~~~~~~~~~~~l~~~~~-~l~~L~l~~~~-~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~l~~lL~~ 329 (430)
+.+.+..+ .... ..+...+..++ +|+.|++.++. .+....++. .+++|++|+++.+.. .... ....+..
T Consensus 171 ~~L~l~~~~~l~~--~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~--l~~~-~~~~l~~ 245 (336)
T 2ast_B 171 DELNLSWCFDFTE--KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM--LKND-CFQEFFQ 245 (336)
T ss_dssp CEEECCCCTTCCH--HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT--CCGG-GGGGGGG
T ss_pred CEEcCCCCCCcCh--HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc--CCHH-HHHHHhC
Confidence 44444433 1110 11224456667 77777776663 122222222 266777777744321 0111 1223456
Q ss_pred CCCceEEEEEEeccccccccCccccccCcCCCccEEEEeee
Q 014141 330 CPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGF 370 (430)
Q Consensus 330 ~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~ 370 (430)
+|+|++|++..... ..+.+. ..-..+++|+.+.+.|.
T Consensus 246 l~~L~~L~l~~~~~---~~~~~~-~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 246 LNYLQHLSLSRCYD---IIPETL-LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCEEECTTCTT---CCGGGG-GGGGGCTTCCEEECTTS
T ss_pred CCCCCEeeCCCCCC---CCHHHH-HHHhcCCCCCEEeccCc
Confidence 68888887754321 011110 11123667888887766
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.86 E-value=1.6e-09 Score=110.55 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=18.5
Q ss_pred CceEEEeeEE-EcchhHHHHhhcCCcccceeeccC
Q 014141 166 LRSLTLCAVN-VTGEVVEFFIHNCPLLENLRITQS 199 (430)
Q Consensus 166 L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~~ 199 (430)
|++|+|.++. +++..+..++.+||+|++|+|.+|
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 174 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES 174 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc
Confidence 5555555553 334445555555666666666555
No 5
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.86 E-value=1.4e-09 Score=72.82 Aligned_cols=38 Identities=32% Similarity=0.478 Sum_probs=33.4
Q ss_pred cccCCCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhhc
Q 014141 20 EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLW 57 (430)
Q Consensus 20 ~d~is~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~lw 57 (430)
.+.++.||+|++.+||++|+.+|+++++.|||+|+.+.
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 46689999999999999999999999999999999853
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.82 E-value=1.7e-09 Score=110.50 Aligned_cols=82 Identities=15% Similarity=0.147 Sum_probs=58.6
Q ss_pred CCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCcee---eEecCCCCcceEEEeecC-------CccEEEEe
Q 014141 162 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL---KVVGSSIPLKCLDIQFCY-------SIKEIEIS 231 (430)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~---~i~~~~~~L~~L~l~~c~-------~l~~i~i~ 231 (430)
.+++|++|+|.++.+++..+..+..+||+|+.|.|.+|..++.. .+...+++|++|.+.+|. .+..+.-.
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 67999999999999988888887778999999999999655431 122256889999888765 01111223
Q ss_pred CCceeEEEEecc
Q 014141 232 APNLLSFKYIGQ 243 (430)
Q Consensus 232 ~P~L~~L~~~~~ 243 (430)
.|+|++|++.+.
T Consensus 183 ~~~L~~L~l~~~ 194 (594)
T 2p1m_B 183 YTSLVSLNISCL 194 (594)
T ss_dssp CCCCCEEECTTC
T ss_pred CCcCcEEEeccc
Confidence 456777766544
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.79 E-value=1.6e-08 Score=95.47 Aligned_cols=168 Identities=23% Similarity=0.305 Sum_probs=84.9
Q ss_pred CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee-EecCCCCcceEEEeecCCccEEE---------
Q 014141 160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFCYSIKEIE--------- 229 (430)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~-i~~~~~~L~~L~l~~c~~l~~i~--------- 229 (430)
+.++++|++|+|.+..+. .+...+..+++|+.|.|.++... .+. .-..+++|+.|.+.+|.....+.
T Consensus 100 l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~ 176 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176 (328)
T ss_dssp GGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred hhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence 345566666666655544 22223445566666666655321 111 01234556666666554322211
Q ss_pred ---EeCCceeEEEEeccee---eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCC--
Q 014141 230 ---ISAPNLLSFKYIGQDI---NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE-- 301 (430)
Q Consensus 230 ---i~~P~L~~L~~~~~~~---~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~-- 301 (430)
-..++|+.|++.+..+ +-.+..+++|+.+.+..+.... +..-+..+++|+.|++..+. +. ..+|..
T Consensus 177 ~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~----l~~~l~~l~~L~~L~Ls~n~-~~-~~~p~~~~ 250 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA----LGPAIHHLPKLEELDLRGCT-AL-RNYPPIFG 250 (328)
T ss_dssp CCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC----CCGGGGGCTTCCEEECTTCT-TC-CBCCCCTT
T ss_pred hhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc----CchhhccCCCCCEEECcCCc-ch-hhhHHHhc
Confidence 1256666666665533 2234556677777776544331 11224567778888877654 11 122322
Q ss_pred -CCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141 302 -FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI 340 (430)
Q Consensus 302 -~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~ 340 (430)
+++|++|++..+.. ...+..-+..+++|+.|+|..
T Consensus 251 ~l~~L~~L~L~~n~~----~~~~p~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 251 GRAPLKRLILKDCSN----LLTLPLDIHRLTQLEKLDLRG 286 (328)
T ss_dssp CCCCCCEEECTTCTT----CCBCCTTGGGCTTCCEEECTT
T ss_pred CCCCCCEEECCCCCc----hhhcchhhhcCCCCCEEeCCC
Confidence 56666666643211 111223356777888877744
No 8
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.60 E-value=9.5e-07 Score=83.95 Aligned_cols=215 Identities=12% Similarity=0.109 Sum_probs=141.0
Q ss_pred CCCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee---EecCCCCcceEEEeecCCccEEE---E-
Q 014141 158 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK---VVGSSIPLKCLDIQFCYSIKEIE---I- 230 (430)
Q Consensus 158 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~---i~~~~~~L~~L~l~~c~~l~~i~---i- 230 (430)
..+.++++|++|+|.+..++.- ....+.++++|+.|.+.++.. +.+. .-..+++|+.|.+.++..+..+. +
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 171 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171 (353)
T ss_dssp TTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred hhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCccccccCHHHcc
Confidence 3467889999999999877642 223467899999999998843 2222 22456899999999986455553 1
Q ss_pred eCCceeEEEEecceee----eecCCCCCceEEEEEeecCcchhhHHH-HhhccCCCceEEEEecceeeecccc---c--C
Q 014141 231 SAPNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYLPQLKTLELDGCNEVFAQFS---Q--R 300 (430)
Q Consensus 231 ~~P~L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~-~l~~~~~~l~~L~l~~~~~~~~~~l---~--~ 300 (430)
..++|+.|++.+.... ..+..+++|+.+.+..+... .+. .++..+++|+.|++..+. +..... + .
T Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~ 246 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI----LLLEIFVDVTSSVECLELRDTD-LDTFHFSELSTGE 246 (353)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST----THHHHHHHHTTTEEEEEEESCB-CTTCCCC------
T ss_pred CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc----cchhhhhhhcccccEEECCCCc-ccccccccccccc
Confidence 3578999999877442 24557788999988865432 222 445678999999998876 332111 1 1
Q ss_pred CCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCcccccc--CcCCCccEEEEee--eecChhh
Q 014141 301 EFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISK--HSHQHLKLVELQG--FNGREID 376 (430)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~L~~v~i~~--~~g~~~e 376 (430)
....++.+.+....-.......+...+..+++|+.|++....- . ..+.. ..+++|+.+.+.+ +.+....
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l----~---~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL----K---SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC----C---CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC----C---ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 2566788887655433344445677889999999999955321 1 11221 3468899999987 4455545
Q ss_pred HHHHHHHHhc
Q 014141 377 FELAFYVFEN 386 (430)
Q Consensus 377 ~~l~~~ll~~ 386 (430)
+..+...+.+
T Consensus 320 l~~l~~~~~~ 329 (353)
T 2z80_A 320 IDYLSRWLNK 329 (353)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHh
Confidence 5555444443
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.57 E-value=7.9e-08 Score=91.15 Aligned_cols=213 Identities=17% Similarity=0.166 Sum_probs=120.5
Q ss_pred CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE-E-eCCceeE
Q 014141 160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-I-SAPNLLS 237 (430)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~-i-~~P~L~~ 237 (430)
+.++++|++|+|.++.+.+-. . +..+++|+.|.+.+|.....+..-..+++|+.|.+.++. +..+. + ..++|+.
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~~--~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~ 181 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDIS--P-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTPIANLTDLYS 181 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCCG--G-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSE
T ss_pred HcCCCcCCEEECcCCcccCch--h-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchhhccCCCCCE
Confidence 456677777777777665421 1 567777777777777655444333455677777777665 22111 1 3467777
Q ss_pred EEEecceee--eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeec
Q 014141 238 FKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAA 315 (430)
Q Consensus 238 L~~~~~~~~--~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 315 (430)
|++.+.... ..+..+++|+.+.+..+..... ..+..+++|+.|.+..+. +........+++|++|+++...-
T Consensus 182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDI-----TPVANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQI 255 (347)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-----GGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCC
T ss_pred EEccCCcccccccccCCCccceeecccCCCCCC-----chhhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCCcc
Confidence 777665432 1144566677766664432211 115677788888887765 33222223367777777754322
Q ss_pred CccchhhHHHHHhhCCCceEEEEEEeccccccccCccccccCcCCCccEEEEeeeecChhhHHHHHHHHhcccccccEEE
Q 014141 316 NQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMII 395 (430)
Q Consensus 316 ~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i 395 (430)
. . + ..+..+|+|+.|.+....- .. .+.-..+++|+.+.+.+..-..... ..+.+.+.|+.+.+
T Consensus 256 ~--~---~-~~~~~l~~L~~L~l~~n~l----~~---~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 256 S--D---I-NAVKDLTKLKMLNVGSNQI----SD---ISVLNNLSQLNSLFLNNNQLGNEDM----EVIGGLTNLTTLFL 318 (347)
T ss_dssp C--C---C-GGGTTCTTCCEEECCSSCC----CC---CGGGGGCTTCSEEECCSSCCCGGGH----HHHHTCTTCSEEEC
T ss_pred C--C---C-hhHhcCCCcCEEEccCCcc----CC---ChhhcCCCCCCEEECcCCcCCCcCh----hHhhccccCCEEEc
Confidence 1 1 1 2356778888887754311 11 1112345778888887754332222 23446788888877
Q ss_pred ecCC
Q 014141 396 KPSG 399 (430)
Q Consensus 396 ~~~~ 399 (430)
....
T Consensus 319 ~~n~ 322 (347)
T 4fmz_A 319 SQNH 322 (347)
T ss_dssp CSSS
T ss_pred cCCc
Confidence 6553
No 10
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.53 E-value=1.4e-08 Score=97.99 Aligned_cols=206 Identities=17% Similarity=0.147 Sum_probs=103.6
Q ss_pred CCCCCCCceEEEeeEEEc---c---hh---HHHHhhcCCcccceeeccCCCCc----ee-eEecCCCCcceEEEeecCCc
Q 014141 160 LSGIKSLRSLTLCAVNVT---G---EV---VEFFIHNCPLLENLRITQSPDLL----SL-KVVGSSIPLKCLDIQFCYSI 225 (430)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~---~---~~---l~~ll~~cp~Le~L~L~~~~~~~----~~-~i~~~~~~L~~L~l~~c~~l 225 (430)
+..+++|++|+|.++.+. + .. +...+..+++|+.|.|.++..-. .+ ..-..+++|+.|.+.+|. +
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l 134 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-L 134 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-C
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-C
Confidence 346677888888776432 1 11 23335677888888887764322 01 011234777888777765 2
Q ss_pred cEE---EE-eC-------------CceeEEEEecceee--------eecCCCCCceEEEEEeecCcc-hhhHHHH-hhcc
Q 014141 226 KEI---EI-SA-------------PNLLSFKYIGQDIN--------LHVGSLPQLVDVVFHVTPMVQ-KMHCIGS-IVSY 278 (430)
Q Consensus 226 ~~i---~i-~~-------------P~L~~L~~~~~~~~--------~~~~~~~~L~~~~i~~~~~~~-~~~~~~~-l~~~ 278 (430)
... .+ .+ |+|++|.+.++.+. -.+..+++|+.+.+..+.... ....+.. .+..
T Consensus 135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~ 214 (386)
T 2ca6_A 135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc
Confidence 110 00 01 67777777655331 122345677777766443321 1111222 5566
Q ss_pred CCCceEEEEecceeeec---cccc---CCCCccceEEEEEeecCccchhhHHHHHhh--CCCceEEEEEEeccccccccC
Q 014141 279 LPQLKTLELDGCNEVFA---QFSQ---REFPKLMNLNISFTAANQETLLGLSFIMKA--CPFLEKLVLQIWNNGRRIGKK 350 (430)
Q Consensus 279 ~~~l~~L~l~~~~~~~~---~~l~---~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~--~p~L~~L~l~~~~~~~~~~~~ 350 (430)
+++|+.|.+..+. +.. ..++ ..+++|++|+|+.+.-.......+...+.. +|+|+.|.+....- ...
T Consensus 215 ~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i----~~~ 289 (386)
T 2ca6_A 215 CQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI----ELD 289 (386)
T ss_dssp CTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC----BHH
T ss_pred CCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC----CHH
Confidence 7777777776665 321 1112 125677777764432221222234455544 77777777744211 110
Q ss_pred cc--cccc--CcCCCccEEEEeeee
Q 014141 351 RH--QISK--HSHQHLKLVELQGFN 371 (430)
Q Consensus 351 ~~--~~~~--~~~~~L~~v~i~~~~ 371 (430)
+. .+.. ..+++|+.+.+.+-.
T Consensus 290 g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 290 AVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHHHHhcCCCceEEEccCCc
Confidence 10 1111 224677777777643
No 11
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.44 E-value=6.5e-08 Score=95.45 Aligned_cols=232 Identities=13% Similarity=0.092 Sum_probs=104.7
Q ss_pred CCCCCCceEEEeeEEEcchhHHHHhhcCC----cccceeeccCCCCc----e-eeEecCCCCcceEEEeecCCccEE---
Q 014141 161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCP----LLENLRITQSPDLL----S-LKVVGSSIPLKCLDIQFCYSIKEI--- 228 (430)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp----~Le~L~L~~~~~~~----~-~~i~~~~~~L~~L~l~~c~~l~~i--- 228 (430)
..+++|++|+|++..+.+..+..+...++ +|++|.|.+|..-. . ...-..+++|+.|.+.++. +...
T Consensus 53 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~ 131 (461)
T 1z7x_W 53 RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQ 131 (461)
T ss_dssp HTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHH
T ss_pred HhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHH
Confidence 35577777777777776655666555555 67777777774221 0 1111245677777777665 2210
Q ss_pred --E----EeCCceeEEEEecceeee--------ecCCCCCceEEEEEeecCcch-hhHHH-HhhccCCCceEEEEeccee
Q 014141 229 --E----ISAPNLLSFKYIGQDINL--------HVGSLPQLVDVVFHVTPMVQK-MHCIG-SIVSYLPQLKTLELDGCNE 292 (430)
Q Consensus 229 --~----i~~P~L~~L~~~~~~~~~--------~~~~~~~L~~~~i~~~~~~~~-~~~~~-~l~~~~~~l~~L~l~~~~~ 292 (430)
. -..++|++|.+.++.+.. .+..+++|+.+.+..+..... ...+. .+....++|+.|.+..+.
T Consensus 132 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~- 210 (461)
T 1z7x_W 132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG- 210 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-
T ss_pred HHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-
Confidence 0 012356777666553211 122345666666554332211 11111 222234566666665554
Q ss_pred eeccc---ccC---CCCccceEEEEEeecCccchhhHHH-HHhhCCCceEEEEEEeccccccccCcc--cccc-CcCCCc
Q 014141 293 VFAQF---SQR---EFPKLMNLNISFTAANQETLLGLSF-IMKACPFLEKLVLQIWNNGRRIGKKRH--QISK-HSHQHL 362 (430)
Q Consensus 293 ~~~~~---l~~---~~~~L~~L~l~~~~~~~~~~~~l~~-lL~~~p~L~~L~l~~~~~~~~~~~~~~--~~~~-~~~~~L 362 (430)
+.... ++. .+++|++|+++...-.......+.. +...+++|++|++.... ....+. .+.. ..+++|
T Consensus 211 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~----l~~~~~~~l~~~l~~~~~L 286 (461)
T 1z7x_W 211 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG----ITAKGCGDLCRVLRAKESL 286 (461)
T ss_dssp CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC----CCHHHHHHHHHHHHHCTTC
T ss_pred CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC----CCHHHHHHHHHHHhhCCCc
Confidence 22211 111 1456666665432111111111111 22245666666663321 011000 0111 124567
Q ss_pred cEEEEeeeecCh-hhHHHHHHHHhcccccccEEEecC
Q 014141 363 KLVELQGFNGRE-IDFELAFYVFENATMLEKMIIKPS 398 (430)
Q Consensus 363 ~~v~i~~~~g~~-~e~~l~~~ll~~a~~Le~m~i~~~ 398 (430)
+.+.+.+-.-.. .-..+...+..+.+.|+++.+...
T Consensus 287 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred ceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 776666532111 112333333344457777766544
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.42 E-value=3.6e-08 Score=93.00 Aligned_cols=219 Identities=16% Similarity=0.172 Sum_probs=140.5
Q ss_pred HHHHhhcCCCceeEEEEEEecCCCCCccHhHHHHHHhhcCcEEEEEEcCCCCCCCceeeccccccccCCCCCCCCCCCCc
Q 014141 88 NKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLR 167 (430)
Q Consensus 88 ~~~l~~~~~~~l~~l~l~~~~~~~~~~~v~~wl~~~~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~~p~~~~~~~~L~ 167 (430)
...+.......+..+.+....-. .+...+.. -.+++.|++....-. .+|..+.++++|+
T Consensus 72 ~~~l~~~~~~~l~~L~L~~n~l~----~lp~~l~~--l~~L~~L~L~~n~l~---------------~lp~~~~~l~~L~ 130 (328)
T 4fcg_A 72 ADLLEDATQPGRVALELRSVPLP----QFPDQAFR--LSHLQHMTIDAAGLM---------------ELPDTMQQFAGLE 130 (328)
T ss_dssp HHHHHHHTSTTCCEEEEESSCCS----SCCSCGGG--GTTCSEEEEESSCCC---------------CCCSCGGGGTTCS
T ss_pred HHHHhcccccceeEEEccCCCch----hcChhhhh--CCCCCEEECCCCCcc---------------chhHHHhccCCCC
Confidence 33443333455888888543111 11111111 237888888654221 2445567899999
Q ss_pred eEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe----------cCCCCcceEEEeecCCccEEE---EeCCc
Q 014141 168 SLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV----------GSSIPLKCLDIQFCYSIKEIE---ISAPN 234 (430)
Q Consensus 168 ~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~----------~~~~~L~~L~l~~c~~l~~i~---i~~P~ 234 (430)
+|+|.+..+. .+..-+..+++|+.|.|.+|...+.+... ..+++|+.|.+.++. +..+. -..++
T Consensus 131 ~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~ 207 (328)
T 4fcg_A 131 TLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQN 207 (328)
T ss_dssp EEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTT
T ss_pred EEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCC
Confidence 9999999876 34445788999999999998655433211 125899999999886 33331 14578
Q ss_pred eeEEEEecceee---eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCC---CCccceE
Q 014141 235 LLSFKYIGQDIN---LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLMNL 308 (430)
Q Consensus 235 L~~L~~~~~~~~---~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~---~~~L~~L 308 (430)
|++|++.+..+. -.+..+++|+.+.+..+..... +...+..+++|+.|.+..+. . ...+|.. +++|++|
T Consensus 208 L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~---~p~~~~~l~~L~~L~L~~n~-~-~~~~p~~~~~l~~L~~L 282 (328)
T 4fcg_A 208 LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN---YPPIFGGRAPLKRLILKDCS-N-LLTLPLDIHRLTQLEKL 282 (328)
T ss_dssp CCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCB---CCCCTTCCCCCCEEECTTCT-T-CCBCCTTGGGCTTCCEE
T ss_pred CCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhh---hHHHhcCCCCCCEEECCCCC-c-hhhcchhhhcCCCCCEE
Confidence 999999887442 2456788999999885443321 11345778999999998865 1 1223332 7788888
Q ss_pred EEEEeecCccchhhHHHHHhhCCCceEEEEE
Q 014141 309 NISFTAANQETLLGLSFIMKACPFLEKLVLQ 339 (430)
Q Consensus 309 ~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~ 339 (430)
+|+.+. ....+...+..+|+|+.+.+.
T Consensus 283 ~L~~n~----~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 283 DLRGCV----NLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp ECTTCT----TCCCCCGGGGGSCTTCEEECC
T ss_pred eCCCCC----chhhccHHHhhccCceEEeCC
Confidence 885432 122345667889999998874
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.42 E-value=2.3e-07 Score=87.96 Aligned_cols=211 Identities=13% Similarity=0.145 Sum_probs=125.8
Q ss_pred CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE--EeCCceeE
Q 014141 160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLLS 237 (430)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~--i~~P~L~~ 237 (430)
+.++++|++|+|.++.+++- . -+..+++|++|.+.++.. ..+.....+++|+.|.+.+|.....+. -..++|++
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~~L~l~~n~i-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~ 159 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDI--S-ALQNLTNLRELYLNEDNI-SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNY 159 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEECTTSCC-CCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCE
T ss_pred hhcCCcCCEEEccCCcccCc--h-HHcCCCcCCEEECcCCcc-cCchhhccCCceeEEECCCCCCcccccchhhCCCCcE
Confidence 45677788888777766542 2 256777888888877642 222213345777888877775433322 13567888
Q ss_pred EEEecceee--eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeec
Q 014141 238 FKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAA 315 (430)
Q Consensus 238 L~~~~~~~~--~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 315 (430)
|.+.+.... ..+..+++|+.+.+..+..... ..+..+++|+.|.+..+. +........+++|++|+++.+.-
T Consensus 160 L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 160 LTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI-----SPLASLTSLHYFTAYVNQ-ITDITPVANMTRLNSLKIGNNKI 233 (347)
T ss_dssp EECCSSCCCCCGGGGGCTTCSEEECTTSCCCCC-----GGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCC
T ss_pred EEecCCCcCCchhhccCCCCCEEEccCCccccc-----ccccCCCccceeecccCC-CCCCchhhcCCcCCEEEccCCcc
Confidence 877766432 1245677778777764433211 115677888888887765 33222223377888888855422
Q ss_pred CccchhhHHHHHhhCCCceEEEEEEeccccccccCccccccCcCCCccEEEEeeeecChhhHHHHHHHHhcccccccEEE
Q 014141 316 NQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMII 395 (430)
Q Consensus 316 ~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i 395 (430)
. .. .. +..+|+|++|++....- .. .+.-..+++|+.+.+.+..-..- -.+.+.+.|+.+.+
T Consensus 234 ~--~~---~~-~~~l~~L~~L~l~~n~l----~~---~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 234 T--DL---SP-LANLSQLTWLEIGTNQI----SD---INAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFL 294 (347)
T ss_dssp C--CC---GG-GTTCTTCCEEECCSSCC----CC---CGGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEEC
T ss_pred C--CC---cc-hhcCCCCCEEECCCCcc----CC---ChhHhcCCCcCEEEccCCccCCC------hhhcCCCCCCEEEC
Confidence 1 11 12 77889999998855321 11 11234567899998887532221 12567899999988
Q ss_pred ecCC
Q 014141 396 KPSG 399 (430)
Q Consensus 396 ~~~~ 399 (430)
....
T Consensus 295 ~~n~ 298 (347)
T 4fmz_A 295 NNNQ 298 (347)
T ss_dssp CSSC
T ss_pred cCCc
Confidence 7654
No 14
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.39 E-value=2.1e-06 Score=81.52 Aligned_cols=167 Identities=17% Similarity=0.211 Sum_probs=101.0
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEE---E-eCCceeE
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIE---I-SAPNLLS 237 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~---i-~~P~L~~ 237 (430)
++|++|+|.+..+++-. ...+..+++|+.|.+.++. ++.+.. -..+++|+.|++.++. +..+. + ..++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSE
T ss_pred ccCcEEECCCCcCcccC-HHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCE
Confidence 67888888877655311 1135678888888888773 333211 1245778888887765 33332 1 3578888
Q ss_pred EEEecceee-----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCC---CCccceEE
Q 014141 238 FKYIGQDIN-----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLMNLN 309 (430)
Q Consensus 238 L~~~~~~~~-----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~---~~~L~~L~ 309 (430)
|++.+..+. ..+..+++|+.+.+..+....... ...+..+++|+.|.+..+. +... .+.. +++|++|+
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~L~l~~n~-l~~~-~~~~l~~l~~L~~L~ 204 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ--RKDFAGLTFLEELEIDASD-LQSY-EPKSLKSIQNVSHLI 204 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC--TTTTTTCCEEEEEEEEETT-CCEE-CTTTTTTCSEEEEEE
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccC--HHHccCCCCCCEEECCCCC-cCcc-CHHHHhccccCCeec
Confidence 888766432 135678889988888653221110 1345678899999998776 3221 2222 56777777
Q ss_pred EEEeecCccchhhHHHHHhhCCCceEEEEEEe
Q 014141 310 ISFTAANQETLLGLSFIMKACPFLEKLVLQIW 341 (430)
Q Consensus 310 l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~ 341 (430)
++...- .. .-..++..+++|+.|++...
T Consensus 205 l~~n~l--~~--~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 205 LHMKQH--IL--LLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp EECSCS--TT--HHHHHHHHTTTEEEEEEESC
T ss_pred CCCCcc--cc--chhhhhhhcccccEEECCCC
Confidence 755321 11 12345677899999999764
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.37 E-value=8.4e-07 Score=87.77 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=18.0
Q ss_pred cCCCccEEEEeeeecChhhHHHHHHHHhcccccccEEEecC
Q 014141 358 SHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPS 398 (430)
Q Consensus 358 ~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~~~ 398 (430)
.+++|+.+.+.+-.-.... . +.+.+.|+++.+...
T Consensus 307 ~l~~L~~L~L~~n~l~~~~-~-----~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 307 NLKNLTYLTLYFNNISDIS-P-----VSSLTKLQRLFFYNN 341 (466)
T ss_dssp GCTTCSEEECCSSCCSCCG-G-----GGGCTTCCEEECCSS
T ss_pred CCCCCCEEECcCCcCCCch-h-----hccCccCCEeECCCC
Confidence 3456666666653211110 0 346677777766543
No 16
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.36 E-value=3e-07 Score=90.61 Aligned_cols=173 Identities=18% Similarity=0.200 Sum_probs=112.4
Q ss_pred CCceEEEeeEEEcch---hHHHHhhcCCcccceeeccCCCCceee-------EecCCCCcceEEEeecCCccEE------
Q 014141 165 SLRSLTLCAVNVTGE---VVEFFIHNCPLLENLRITQSPDLLSLK-------VVGSSIPLKCLDIQFCYSIKEI------ 228 (430)
Q Consensus 165 ~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~~~~~~~~~-------i~~~~~~L~~L~l~~c~~l~~i------ 228 (430)
+|++|+|.++.+++. .+...+..+|+|++|.|.++. ++... +....++|+.|.+.+|. +...
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~ 163 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLA 163 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHH
Confidence 799999999998874 466778899999999999986 32211 11123579999999885 2211
Q ss_pred --EEeCCceeEEEEecceeee----ec-----CCCCCceEEEEEeecCcch-hhHHHHhhccCCCceEEEEecceeeecc
Q 014141 229 --EISAPNLLSFKYIGQDINL----HV-----GSLPQLVDVVFHVTPMVQK-MHCIGSIVSYLPQLKTLELDGCNEVFAQ 296 (430)
Q Consensus 229 --~i~~P~L~~L~~~~~~~~~----~~-----~~~~~L~~~~i~~~~~~~~-~~~~~~l~~~~~~l~~L~l~~~~~~~~~ 296 (430)
--..|+|++|++.+..+.. .+ ...++|+.+.+..+..... ...+...+..+++|+.|++..+. +...
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~ 242 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDV 242 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChH
Confidence 0124899999988764321 11 1355888888875543321 12234566788999999998775 3321
Q ss_pred c-------ccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141 297 F-------SQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI 340 (430)
Q Consensus 297 ~-------l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~ 340 (430)
. +...+++|++|+++.+.-.......+...+..+++|++|++..
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC
Confidence 1 1123678888888554322223333677788899999998854
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.35 E-value=9.5e-07 Score=87.35 Aligned_cols=209 Identities=13% Similarity=0.119 Sum_probs=106.5
Q ss_pred CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE--EeCCceeE
Q 014141 160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLLS 237 (430)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~--i~~P~L~~ 237 (430)
+.++++|++|.|.++.+.+-. . +..+++|+.|.+.+|. ++.+..-..+++|+.|.+.++. +..+. -..++|+.
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~ 160 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADIT--P-LANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQ 160 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSE
T ss_pred hhccccCCEEECCCCccccCh--h-hcCCCCCCEEECCCCC-CCCChHHcCCCCCCEEECCCCc-cCCChhhccCCcccE
Confidence 445666666666666554321 1 5566666666666653 2222112344666666666553 11111 12356666
Q ss_pred EEEecceee-eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeecC
Q 014141 238 FKYIGQDIN-LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAAN 316 (430)
Q Consensus 238 L~~~~~~~~-~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 316 (430)
|.+.+.... ..+..+++|+.+.+..+..... ..+..+++|+.|.+..+. +........+++|++|++....-.
T Consensus 161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDI-----SVLAKLTNLESLIATNNQ-ISDITPLGILTNLDELSLNGNQLK 234 (466)
T ss_dssp EEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCC
T ss_pred eecCCcccCchhhccCCCCCEEECcCCcCCCC-----hhhccCCCCCEEEecCCc-ccccccccccCCCCEEECCCCCcc
Confidence 665432111 1244566666666654332211 224566777777776655 222111222667777776443211
Q ss_pred ccchhhHHHHHhhCCCceEEEEEEeccccccccCccccccCcCCCccEEEEeeeecChhhHHHHHHHHhcccccccEEEe
Q 014141 317 QETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIK 396 (430)
Q Consensus 317 ~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~ 396 (430)
.. ..+..+|+|+.|++....- .. ...-..+++|+.+.+.+-.-..-. . +.+.+.|+.+.+.
T Consensus 235 --~~----~~l~~l~~L~~L~l~~n~l----~~---~~~~~~l~~L~~L~l~~n~l~~~~-~-----~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 235 --DI----GTLASLTNLTDLDLANNQI----SN---LAPLSGLTKLTELKLGANQISNIS-P-----LAGLTALTNLELN 295 (466)
T ss_dssp --CC----GGGGGCTTCSEEECCSSCC----CC---CGGGTTCTTCSEEECCSSCCCCCG-G-----GTTCTTCSEEECC
T ss_pred --cc----hhhhcCCCCCEEECCCCcc----cc---chhhhcCCCCCEEECCCCccCccc-c-----ccCCCccCeEEcC
Confidence 11 2355677777777744211 00 111234577888888764322111 0 4577889988886
Q ss_pred cC
Q 014141 397 PS 398 (430)
Q Consensus 397 ~~ 398 (430)
..
T Consensus 296 ~n 297 (466)
T 1o6v_A 296 EN 297 (466)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 18
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.31 E-value=4e-07 Score=84.96 Aligned_cols=166 Identities=16% Similarity=0.199 Sum_probs=99.7
Q ss_pred CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE-E-eCCceeE
Q 014141 160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-I-SAPNLLS 237 (430)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~-i-~~P~L~~ 237 (430)
+..+++|++|+|.++.+.+-. . +..+++|+.|.|.++. ++.+..-..+++|+.|.+.++. +..+. + ..++|+.
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~--~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~ 133 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQV 133 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCE
T ss_pred hhccCCCCEEEccCCcCCCCh--h-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCCC-CCCchhhcCCCCCCE
Confidence 456788888888888765421 2 6778888888888775 3333222345778888887765 22221 1 3467777
Q ss_pred EEEecceee--eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeec
Q 014141 238 FKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAA 315 (430)
Q Consensus 238 L~~~~~~~~--~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 315 (430)
|.+.+.... ..+..+++|+.+.+..+..... .-+..+++|+.|.+..+. +........+++|++|+++...-
T Consensus 134 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-----TPLANLSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNNQI 207 (308)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-----GGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECTTSCC
T ss_pred EECCCCccCcCccccCCCCccEEEccCCcCCCC-----hhhcCCCCCCEEECCCCc-cCcChhhcCCCCCCEEEccCCcc
Confidence 777765432 1145667777777765433221 115677888888887765 33222122367788877744321
Q ss_pred CccchhhHHHHHhhCCCceEEEEEEec
Q 014141 316 NQETLLGLSFIMKACPFLEKLVLQIWN 342 (430)
Q Consensus 316 ~~~~~~~l~~lL~~~p~L~~L~l~~~~ 342 (430)
. .. .. +..+|+|+.|++....
T Consensus 208 ~--~~---~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 208 S--DV---SP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp C--BC---GG-GTTCTTCCEEEEEEEE
T ss_pred C--cc---cc-ccCCCCCCEEEccCCe
Confidence 1 11 11 5778888888887643
No 19
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.30 E-value=5.5e-08 Score=91.76 Aligned_cols=167 Identities=19% Similarity=0.277 Sum_probs=90.5
Q ss_pred CCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCcee---eEecCCCCcceEEEeecCCccEE-----EEeC
Q 014141 161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL---KVVGSSIPLKCLDIQFCYSIKEI-----EISA 232 (430)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~---~i~~~~~~L~~L~l~~c~~l~~i-----~i~~ 232 (430)
.++++|++|+|.++.+++.... .++.||+|+.|.|.+|..++.. .+...+++|+.|.+.+|..+... .-..
T Consensus 115 ~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp TTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred hhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 3567777777777766544333 3455777777777777544321 11224567777777776333321 1234
Q ss_pred C-ceeEEEEecce--e-----eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccc--cCCC
Q 014141 233 P-NLLSFKYIGQD--I-----NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFS--QREF 302 (430)
Q Consensus 233 P-~L~~L~~~~~~--~-----~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l--~~~~ 302 (430)
| +|++|++.++. . +..+..+++|+.+.+..+.... +.....+..+++|+.|++..+..+....+ ...+
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~ 271 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK--NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 271 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC--GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC--HHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence 5 67777766542 1 1223456677777766443111 11113345668888888876642222211 1227
Q ss_pred CccceEEEEEeecCccchhhHHHHHhhCCCce
Q 014141 303 PKLMNLNISFTAANQETLLGLSFIMKACPFLE 334 (430)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~ 334 (430)
++|++|++..+ .....+..+.+.+|.|+
T Consensus 272 ~~L~~L~l~~~----i~~~~~~~l~~~l~~L~ 299 (336)
T 2ast_B 272 PTLKTLQVFGI----VPDGTLQLLKEALPHLQ 299 (336)
T ss_dssp TTCCEEECTTS----SCTTCHHHHHHHSTTSE
T ss_pred CCCCEEeccCc----cCHHHHHHHHhhCcceE
Confidence 78888877543 22333455556677765
No 20
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.28 E-value=9.6e-07 Score=82.06 Aligned_cols=210 Identities=15% Similarity=0.131 Sum_probs=115.7
Q ss_pred CCCCCCCceEEEeeEEEcch-hHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE-----EeCC
Q 014141 160 LSGIKSLRSLTLCAVNVTGE-VVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-----ISAP 233 (430)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~-----i~~P 233 (430)
+.++++|++|+|.+..++.. ....-+.++++|+.|.|.++....-...-..+++|+.|.+.++. +..+. ...+
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~ 126 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLR 126 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCT
T ss_pred hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhcc
Confidence 46788888888887766532 11222446888888888887532211112345788888887653 11111 1346
Q ss_pred ceeEEEEecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecc--cccCCCCccce
Q 014141 234 NLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ--FSQREFPKLMN 307 (430)
Q Consensus 234 ~L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~--~l~~~~~~L~~ 307 (430)
+|++|.+.+.... ..+.++++|+.+.+..+..... .....+..+++|+.|++..+. +... .....+++|++
T Consensus 127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 203 (306)
T 2z66_A 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--FLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQV 203 (306)
T ss_dssp TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG--EECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc--cchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCE
Confidence 7888887766443 1244567788777764332210 011345677788888887765 3221 11112667777
Q ss_pred EEEEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCcccccc-CcC-CCccEEEEee--eecChhhHHHHHHH
Q 014141 308 LNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISK-HSH-QHLKLVELQG--FNGREIDFELAFYV 383 (430)
Q Consensus 308 L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~-~~~-~~L~~v~i~~--~~g~~~e~~l~~~l 383 (430)
|+++...-..... ..+..+++|+.|++....- . +..+.. ..+ ++|+.+.+.+ +.+......+.+.+
T Consensus 204 L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l----~--~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l 273 (306)
T 2z66_A 204 LNMSHNNFFSLDT----FPYKCLNSLQVLDYSLNHI----M--TSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 273 (306)
T ss_dssp EECTTSCCSBCCS----GGGTTCTTCCEEECTTSCC----C--BCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHH
T ss_pred EECCCCccCccCh----hhccCcccCCEeECCCCCC----c--ccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHH
Confidence 7774432111111 1256778888888844211 1 111111 122 4788888877 55665555565554
No 21
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.24 E-value=1.4e-06 Score=81.60 Aligned_cols=244 Identities=13% Similarity=0.106 Sum_probs=144.4
Q ss_pred CccHhHHHHHHhh--cCcEEEEEEcCCCCCCCceeeccccccccCCCCCCCCCCCCceEEEeeEEEcchhHHHHhhcCCc
Q 014141 113 KCNITNWVNTAIA--KNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPL 190 (430)
Q Consensus 113 ~~~v~~wl~~~~~--~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~~p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~ 190 (430)
...+...+..... .++++|++....-.. ++ |..+.++++|++|+|.+..+.+.. . +..+++
T Consensus 19 ~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~-----~~---------~~~~~~l~~L~~L~Ls~n~l~~~~-~--~~~l~~ 81 (317)
T 3o53_A 19 DSSLKQALASLRQSAWNVKELDLSGNPLSQ-----IS---------AADLAPFTKLELLNLSSNVLYETL-D--LESLST 81 (317)
T ss_dssp TTTHHHHHHHHHTTGGGCSEEECTTSCCCC-----CC---------HHHHTTCTTCCEEECTTSCCEEEE-E--ETTCTT
T ss_pred ccchhhhHHHHhccCCCCCEEECcCCccCc-----CC---------HHHhhCCCcCCEEECCCCcCCcch-h--hhhcCC
Confidence 3445555554433 367777775432211 11 113357789999999888665321 1 678899
Q ss_pred ccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEE-eCCceeEEEEecceee----eecCCCCCceEEEEEeecC
Q 014141 191 LENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI-SAPNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPM 265 (430)
Q Consensus 191 Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i-~~P~L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~ 265 (430)
|+.|.+.++. ++.+. ..++|+.|.+.++. +..+.. ..++|+.|.+.+..+. ..+..+++|+.+.+..+..
T Consensus 82 L~~L~Ls~n~-l~~l~---~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 82 LRTLDLNNNY-VQELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp CCEEECCSSE-EEEEE---ECTTCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred CCEEECcCCc-ccccc---CCCCcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence 9999998884 33322 23789999988876 444433 4588999998876442 2445678888888875443
Q ss_pred cchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEecccc
Q 014141 266 VQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGR 345 (430)
Q Consensus 266 ~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~ 345 (430)
.... ...+...+++|+.|.+..+. +........+++|++|+++...-. .+..-+..+++|+.|++....-
T Consensus 157 ~~~~--~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~N~l~-----~l~~~~~~l~~L~~L~L~~N~l-- 226 (317)
T 3o53_A 157 DTVN--FAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLA-----FMGPEFQSAAGVTWISLRNNKL-- 226 (317)
T ss_dssp CEEE--GGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSCCC-----EECGGGGGGTTCSEEECTTSCC--
T ss_pred Cccc--HHHHhhccCcCCEEECCCCc-CcccccccccccCCEEECCCCcCC-----cchhhhcccCcccEEECcCCcc--
Confidence 3211 11344578899999998876 432211112788999988554221 1222366789999999854321
Q ss_pred ccccCccccc-cCcCCCccEEEEeeeecChhhHHHHHHHHhcccccccEEEe
Q 014141 346 RIGKKRHQIS-KHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIK 396 (430)
Q Consensus 346 ~~~~~~~~~~-~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~ 396 (430)
. ..+. -..+++|+.+.+.+-.-... .+...+...+.|+.+.+.
T Consensus 227 --~---~l~~~~~~l~~L~~L~l~~N~~~~~---~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 227 --V---LIEKALRFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp --C---EECTTCCCCTTCCEEECTTCCCBHH---HHHHHHHTCHHHHHHHHH
T ss_pred --c---chhhHhhcCCCCCEEEccCCCccCc---CHHHHHhccccceEEECC
Confidence 1 1121 23457899988876433321 222344455666655443
No 22
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.23 E-value=1.1e-06 Score=81.96 Aligned_cols=186 Identities=15% Similarity=0.158 Sum_probs=123.0
Q ss_pred CCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE-E-eCCceeEEE
Q 014141 162 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-I-SAPNLLSFK 239 (430)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~-i-~~P~L~~L~ 239 (430)
.+++|++|++.++.+.. +. -+..+++|+.|.+.+|.. +.+..-..+++|+.|.+.++. +..+. + ..++|+.|.
T Consensus 39 ~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQI-TDLAPLKNLTKITELELSGNP-LKNVSAIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCC-CCCGGGTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcC-CCChhHccCCCCCEEEccCCc-CCCchhhcCCCCCCEEE
Confidence 57999999999887754 22 267899999999999853 322223456899999999876 33332 1 357899999
Q ss_pred Eecceee--eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeecCc
Q 014141 240 YIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQ 317 (430)
Q Consensus 240 ~~~~~~~--~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 317 (430)
+.+..+. -.+..+++|+.+.+..+..... ..+..+++|+.|.+..+. +........+++|++|+++...-.
T Consensus 114 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~- 186 (308)
T 1h6u_A 114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNI-----SPLAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKADDNKIS- 186 (308)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECCSSCCCCC-----GGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCC-
T ss_pred CCCCCCCCchhhcCCCCCCEEECCCCccCcC-----ccccCCCCccEEEccCCc-CCCChhhcCCCCCCEEECCCCccC-
Confidence 8877542 1356788899998886543321 125788899999998876 433222234788888888554221
Q ss_pred cchhhHHHHHhhCCCceEEEEEEeccccccccCccccccCcCCCccEEEEeeee
Q 014141 318 ETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFN 371 (430)
Q Consensus 318 ~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~ 371 (430)
... . +..+|+|+.|++....- .. .+.-..+++|+.+.+.+-.
T Consensus 187 -~~~---~-l~~l~~L~~L~L~~N~l----~~---~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 187 -DIS---P-LASLPNLIEVHLKNNQI----SD---VSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp -CCG---G-GGGCTTCCEEECTTSCC----CB---CGGGTTCTTCCEEEEEEEE
T ss_pred -cCh---h-hcCCCCCCEEEccCCcc----Cc---cccccCCCCCCEEEccCCe
Confidence 111 1 67899999998854321 11 1112356788888888743
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.22 E-value=5.7e-06 Score=83.40 Aligned_cols=221 Identities=14% Similarity=0.123 Sum_probs=121.0
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEE---E-eCCceeE
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIE---I-SAPNLLS 237 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~---i-~~P~L~~ 237 (430)
++|++|+|.+..+++-. ...+.++++|++|.+.++.. +.+.. -..+++|+.|++.++. +..+. + ..++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCE
T ss_pred CCccEEECcCCccCccC-hhhhhcCCcccEEECCCCCc-CccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcE
Confidence 67777777777554311 11246677777777777642 22211 1245677777777664 22221 1 3467777
Q ss_pred EEEecceee-----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCC---CCccceEE
Q 014141 238 FKYIGQDIN-----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLMNLN 309 (430)
Q Consensus 238 L~~~~~~~~-----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~---~~~L~~L~ 309 (430)
|++.+.... ..+.++++|+.+.+..+....... ...+..+++|+.|++..+. +.. ..+.. +++|++|+
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR--RIDFAGLTSLNELEIKALS-LRN-YQSQSLKSIRDIHHLT 178 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC--TTTTTTCCEEEEEEEEETT-CCE-ECTTTTTTCSEEEEEE
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccC--HhhhhcccccCeeeccCCc-ccc-cChhhhhccccCceEe
Confidence 777665331 235677888888887654221110 0235678899999998776 322 12332 56677777
Q ss_pred EEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCccccccCcCCCccEEEEeeeecChhhHHHHHHHHhcccc
Q 014141 310 ISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATM 389 (430)
Q Consensus 310 l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~ 389 (430)
+..... ... -..++..+++|+.|++....-... ........-...+|+.+.+.+-.-......-+...+.+.+.
T Consensus 179 l~~n~~--~~~--~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~ 252 (549)
T 2z81_A 179 LHLSES--AFL--LEIFADILSSVRYLELRDTNLARF--QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252 (549)
T ss_dssp EECSBS--TTH--HHHHHHSTTTBSEEEEESCBCTTC--CCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTT
T ss_pred cccCcc--ccc--chhhHhhcccccEEEccCCccccc--cccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcc
Confidence 654321 111 223456789999999976432110 00001112245678888887654333333333334456666
Q ss_pred cccEEEec
Q 014141 390 LEKMIIKP 397 (430)
Q Consensus 390 Le~m~i~~ 397 (430)
|+.+.+..
T Consensus 253 L~~l~l~~ 260 (549)
T 2z81_A 253 LSEVEFDD 260 (549)
T ss_dssp CCEEEEES
T ss_pred cccccccc
Confidence 66666653
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.12 E-value=2.7e-05 Score=78.36 Aligned_cols=179 Identities=13% Similarity=0.133 Sum_probs=121.0
Q ss_pred CCCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCc--eeeEecCCCCcceEEEeecCCccEEE---E-e
Q 014141 158 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLL--SLKVVGSSIPLKCLDIQFCYSIKEIE---I-S 231 (430)
Q Consensus 158 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~--~~~i~~~~~~L~~L~l~~c~~l~~i~---i-~ 231 (430)
..+.++++|++|+|++..+.+- ....+.++++|+.|.+.++.... ....-..+++|+.|.+.++..+..+. + .
T Consensus 68 ~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 146 (549)
T 2z81_A 68 DAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146 (549)
T ss_dssp TTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred hhccccccCCEEECCCCccCcc-CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc
Confidence 3567889999999999877643 23346789999999999885321 11223456899999999987555543 1 3
Q ss_pred CCceeEEEEecceee----eecCCCCCceEEEEEeecCcchhhHHH-HhhccCCCceEEEEecceeeeccc-----ccCC
Q 014141 232 APNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYLPQLKTLELDGCNEVFAQF-----SQRE 301 (430)
Q Consensus 232 ~P~L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~-~l~~~~~~l~~L~l~~~~~~~~~~-----l~~~ 301 (430)
.++|+.|++.+.... ..+..+++|+.+.+...... .+. .++..+++|+.|++..+. +.... ....
T Consensus 147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~ 221 (549)
T 2z81_A 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA----FLLEIFADILSSVRYLELRDTN-LARFQFSPLPVDEV 221 (549)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST----THHHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCC
T ss_pred ccccCeeeccCCcccccChhhhhccccCceEecccCccc----ccchhhHhhcccccEEEccCCc-cccccccccchhhh
Confidence 578999999876443 23556778888888754432 222 344678999999998876 33221 1223
Q ss_pred CCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEec
Q 014141 302 FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWN 342 (430)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~ 342 (430)
+++|++|++....-.......+...+..+++|+.|++....
T Consensus 222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred hhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 78899999866533223333455667888999999987543
No 25
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.12 E-value=1.7e-06 Score=91.12 Aligned_cols=222 Identities=17% Similarity=0.126 Sum_probs=106.4
Q ss_pred CCCCCCCCCCceEEEeeEEEcchhHH-HHhhcCCcccceeeccCCCCcee--eEecCCCCcceEEEeecCCccEEE----
Q 014141 157 GCGLSGIKSLRSLTLCAVNVTGEVVE-FFIHNCPLLENLRITQSPDLLSL--KVVGSSIPLKCLDIQFCYSIKEIE---- 229 (430)
Q Consensus 157 p~~~~~~~~L~~L~L~~~~~~~~~l~-~ll~~cp~Le~L~L~~~~~~~~~--~i~~~~~~L~~L~l~~c~~l~~i~---- 229 (430)
|..+.++++|++|+|+++.+.+.... .-+..|++|+.|+|.+|.....+ .+...+++|+.|++.++. +....
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 171 (768)
T 3rgz_A 93 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGW 171 (768)
T ss_dssp CCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHH
T ss_pred chhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc-cCCcCChhh
Confidence 44566778888888887777642211 13567788888888776321111 111234667777766554 11110
Q ss_pred ---EeCCceeEEEEecceee--ee-----------------------cCCCCCceEEEEEeecCcchhhHHHHhhccCCC
Q 014141 230 ---ISAPNLLSFKYIGQDIN--LH-----------------------VGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQ 281 (430)
Q Consensus 230 ---i~~P~L~~L~~~~~~~~--~~-----------------------~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~ 281 (430)
-..++|++|++.+.... .. ++.+++|+.+.+..+.... .....+..+++
T Consensus 172 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~---~~~~~l~~l~~ 248 (768)
T 3rgz_A 172 VLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG---DFSRAISTCTE 248 (768)
T ss_dssp HHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS---CHHHHTTTCSS
T ss_pred hhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC---cccHHHhcCCC
Confidence 12244444444433221 11 3344555555544332221 11233455566
Q ss_pred ceEEEEecceeeecccccCCCCccceEEEEEeecCccchhhHH-HHHhhCCCceEEEEEEeccccccccCccccc-cCcC
Q 014141 282 LKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLS-FIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KHSH 359 (430)
Q Consensus 282 l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~-~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~-~~~~ 359 (430)
|+.|.+..+. +........+++|++|++....-.. .+. .+...|++|++|++....- .+..+. -..+
T Consensus 249 L~~L~Ls~n~-l~~~~~~~~l~~L~~L~L~~n~l~~----~ip~~~~~~~~~L~~L~Ls~n~l------~~~~p~~~~~l 317 (768)
T 3rgz_A 249 LKLLNISSNQ-FVGPIPPLPLKSLQYLSLAENKFTG----EIPDFLSGACDTLTGLDLSGNHF------YGAVPPFFGSC 317 (768)
T ss_dssp CCEEECCSSC-CEESCCCCCCTTCCEEECCSSEEEE----SCCCCSCTTCTTCSEEECCSSEE------EECCCGGGGGC
T ss_pred CCEEECCCCc-ccCccCccccCCCCEEECcCCccCC----ccCHHHHhhcCcCCEEECcCCcC------CCccchHHhcC
Confidence 6666665554 2211111135566666653321100 011 1223356777776643211 011111 2345
Q ss_pred CCccEEEEeeee--cChhhHHHHHHHHhcccccccEEEecC
Q 014141 360 QHLKLVELQGFN--GREIDFELAFYVFENATMLEKMIIKPS 398 (430)
Q Consensus 360 ~~L~~v~i~~~~--g~~~e~~l~~~ll~~a~~Le~m~i~~~ 398 (430)
++|+.+.+.+-. |.-.. ..+.+.+.|+.+.+...
T Consensus 318 ~~L~~L~L~~n~l~~~ip~-----~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPM-----DTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp TTCCEEECCSSEEEEECCH-----HHHTTCTTCCEEECCSS
T ss_pred CCccEEECCCCcccCcCCH-----HHHhcCCCCCEEeCcCC
Confidence 788888887643 22111 23457888999888654
No 26
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.10 E-value=2.6e-06 Score=84.76 Aligned_cols=224 Identities=14% Similarity=0.129 Sum_probs=139.0
Q ss_pred CccHhHHHHHHhh--cCcEEEEEEcCCCCCCCceeeccccccccCCCCCCCCCCCCceEEEeeEEEcchhHHHHhhcCCc
Q 014141 113 KCNITNWVNTAIA--KNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPL 190 (430)
Q Consensus 113 ~~~v~~wl~~~~~--~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~~p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~ 190 (430)
...+...+..... .+++.|++....-.. + .|..+.++++|++|+|+++.+++.. . +..+++
T Consensus 19 ~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~-----~---------~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~ 81 (487)
T 3oja_A 19 DSSLKQALASLRQSAWNVKELDLSGNPLSQ-----I---------SAADLAPFTKLELLNLSSNVLYETL-D--LESLST 81 (487)
T ss_dssp TTTHHHHHHTTSTTGGGCCEEECCSSCCCC-----C---------CGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTT
T ss_pred hhhhHHHHHHhcccCCCccEEEeeCCcCCC-----C---------CHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCC
Confidence 3445444443332 267777775542211 1 1224568899999999988765421 1 778999
Q ss_pred ccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE-EeCCceeEEEEeccee----eeecCCCCCceEEEEEeecC
Q 014141 191 LENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-ISAPNLLSFKYIGQDI----NLHVGSLPQLVDVVFHVTPM 265 (430)
Q Consensus 191 Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~-i~~P~L~~L~~~~~~~----~~~~~~~~~L~~~~i~~~~~ 265 (430)
|+.|.|.++. ++.+. ..++|+.|.+.++. +..+. -..|+|+.|.+.+..+ +..++.+++|+.+.++.+..
T Consensus 82 L~~L~Ls~N~-l~~l~---~~~~L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (487)
T 3oja_A 82 LRTLDLNNNY-VQELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (487)
T ss_dssp CCEEECCSSE-EEEEE---ECTTCCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC
T ss_pred CCEEEecCCc-CCCCC---CCCCcCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC
Confidence 9999999883 33332 22789999999887 44433 3458899999987744 23456788899888875544
Q ss_pred cchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEecccc
Q 014141 266 VQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGR 345 (430)
Q Consensus 266 ~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~ 345 (430)
.... ...+...+++|+.|.++.+. +........+++|+.|+|+...-. ++..-+..+|+|+.|++....-.
T Consensus 157 ~~~~--~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~l~~L~~L~Ls~N~l~- 227 (487)
T 3oja_A 157 DTVN--FAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLA-----FMGPEFQSAAGVTWISLRNNKLV- 227 (487)
T ss_dssp CEEE--GGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSCCC-----EECGGGGGGTTCSEEECTTSCCC-
T ss_pred CCcC--hHHHhhhCCcccEEecCCCc-cccccccccCCCCCEEECCCCCCC-----CCCHhHcCCCCccEEEecCCcCc-
Confidence 3211 11344578999999998877 433211123789999998654322 22223668899999998553211
Q ss_pred ccccCccccc-cCcCCCccEEEEeeeecC
Q 014141 346 RIGKKRHQIS-KHSHQHLKLVELQGFNGR 373 (430)
Q Consensus 346 ~~~~~~~~~~-~~~~~~L~~v~i~~~~g~ 373 (430)
..+. -..+++|+.+.+.+-...
T Consensus 228 ------~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 228 ------LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ------EECTTCCCCTTCCEEECTTCCBC
T ss_pred ------ccchhhccCCCCCEEEcCCCCCc
Confidence 1122 234578999888774433
No 27
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.09 E-value=2.6e-07 Score=97.32 Aligned_cols=213 Identities=18% Similarity=0.184 Sum_probs=138.7
Q ss_pred CCCCCCceEEEeeEEEcchhHH--HHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE-E-eCCcee
Q 014141 161 SGIKSLRSLTLCAVNVTGEVVE--FFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-I-SAPNLL 236 (430)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~~l~--~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~-i-~~P~L~ 236 (430)
.++++|++|+|+++.+++.... ..+.+|++|+.|.+.++........ ..+++|+.|.+.++.-...+. + ..++|+
T Consensus 148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~ 226 (768)
T 3rgz_A 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQ 226 (768)
T ss_dssp CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC-TTCTTCCEEECCSSCCCSCCCBCTTCCSCC
T ss_pred ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc-ccCCcCCEEECcCCcCCCCCcccccCCCCC
Confidence 6889999999998887654332 2378899999999998853332222 567899999999886322121 2 458999
Q ss_pred EEEEecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCC----CCccceE
Q 014141 237 SFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE----FPKLMNL 308 (430)
Q Consensus 237 ~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~----~~~L~~L 308 (430)
+|++.+.... ..+..+++|+.+.+..+...... .. ..+++|+.|.+..+. +.. .+|.. +++|++|
T Consensus 227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----~~-~~l~~L~~L~L~~n~-l~~-~ip~~~~~~~~~L~~L 299 (768)
T 3rgz_A 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI----PP-LPLKSLQYLSLAENK-FTG-EIPDFLSGACDTLTGL 299 (768)
T ss_dssp EEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESC----CC-CCCTTCCEEECCSSE-EEE-SCCCCSCTTCTTCSEE
T ss_pred EEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCcc----Cc-cccCCCCEEECcCCc-cCC-ccCHHHHhhcCcCCEE
Confidence 9999887442 35678899999998865443211 11 278899999998876 332 22322 5899999
Q ss_pred EEEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCccccc--cCcCCCccEEEEeeee--cC-hhhHHHHHHH
Q 014141 309 NISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS--KHSHQHLKLVELQGFN--GR-EIDFELAFYV 383 (430)
Q Consensus 309 ~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~--~~~~~~L~~v~i~~~~--g~-~~e~~l~~~l 383 (430)
++....-.. .+...+..+++|++|++....- .+..+. -..+++|+.+.+.+.. |. ...
T Consensus 300 ~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l------~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~------- 362 (768)
T 3rgz_A 300 DLSGNHFYG----AVPPFFGSCSLLESLALSSNNF------SGELPMDTLLKMRGLKVLDLSFNEFSGELPES------- 362 (768)
T ss_dssp ECCSSEEEE----CCCGGGGGCTTCCEEECCSSEE------EEECCHHHHTTCTTCCEEECCSSEEEECCCTT-------
T ss_pred ECcCCcCCC----ccchHHhcCCCccEEECCCCcc------cCcCCHHHHhcCCCCCEEeCcCCccCccccHH-------
Confidence 985542111 2334577899999999954321 111121 2356789999998743 22 121
Q ss_pred Hhccc-ccccEEEecC
Q 014141 384 FENAT-MLEKMIIKPS 398 (430)
Q Consensus 384 l~~a~-~Le~m~i~~~ 398 (430)
+.+.+ .|+.+.+...
T Consensus 363 l~~l~~~L~~L~Ls~N 378 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSN 378 (768)
T ss_dssp HHHHTTTCSEEECCSS
T ss_pred HHhhhcCCcEEEccCC
Confidence 12334 8999888654
No 28
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.09 E-value=3.2e-06 Score=73.13 Aligned_cols=58 Identities=22% Similarity=0.197 Sum_probs=31.3
Q ss_pred CCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecC
Q 014141 162 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCY 223 (430)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~ 223 (430)
.+++|+.|++.+..+.+ +. -+..+++|+.|.+.+| .++.+..-..+++|+.|.+.++.
T Consensus 42 ~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~ 99 (197)
T 4ezg_A 42 QMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKD 99 (197)
T ss_dssp HHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTT
T ss_pred hcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCc
Confidence 45677777777665543 11 2556677777777766 33332222234555555555443
No 29
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.09 E-value=4.8e-06 Score=77.84 Aligned_cols=212 Identities=13% Similarity=0.086 Sum_probs=137.3
Q ss_pred CCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEEeCCceeEEEEe
Q 014141 162 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYI 241 (430)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~ 241 (430)
.+++|++|+|.+..+++- ....+..+++|+.|.|.++....... -..+++|+.|.+.++. +..+. ..|+|+.|.+.
T Consensus 32 ~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~-~~~~L~~L~l~ 107 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL-VGPSIETLHAA 107 (317)
T ss_dssp TGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE-ECTTCCEEECC
T ss_pred cCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc-CCCCcCEEECC
Confidence 568999999999987653 22446889999999999986433333 4556899999999886 55555 34899999998
Q ss_pred ccee-eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecc---cccCCCCccceEEEEEeecCc
Q 014141 242 GQDI-NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ---FSQREFPKLMNLNISFTAANQ 317 (430)
Q Consensus 242 ~~~~-~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~---~l~~~~~~L~~L~l~~~~~~~ 317 (430)
+..+ ......+++|+.+.+..+....... ..+..+++|+.|++..+. +... .+...+++|++|+++...-..
T Consensus 108 ~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 108 NNNISRVSCSRGQGKKNIYLANNKITMLRD---LDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp SSCCSEEEECCCSSCEEEECCSSCCCSGGG---BCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCccCCcCccccCCCCEEECCCCCCCCccc---hhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 8755 3445567889999887554332111 234677899999998876 3322 222236889999885432211
Q ss_pred cchhhHHHHHhhCCCceEEEEEEeccccccccCccccc-cCcCCCccEEEEeeeecChhhHHHHHHHHhcccccccEEEe
Q 014141 318 ETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIK 396 (430)
Q Consensus 318 ~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~ 396 (430)
.. . ...+++|+.|++....-. ..+. -..+++|+.+.+.+-.-.. +..-+.+.+.|+.+.+.
T Consensus 184 ~~--~----~~~l~~L~~L~Ls~N~l~-------~l~~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 184 VK--G----QVVFAKLKTLDLSSNKLA-------FMGPEFQSAAGVTWISLRNNKLVL-----IEKALRFSQNLEHFDLR 245 (317)
T ss_dssp EE--C----CCCCTTCCEEECCSSCCC-------EECGGGGGGTTCSEEECTTSCCCE-----ECTTCCCCTTCCEEECT
T ss_pred cc--c----ccccccCCEEECCCCcCC-------cchhhhcccCcccEEECcCCcccc-----hhhHhhcCCCCCEEEcc
Confidence 11 1 114789999998653211 1111 2245788888887632111 01123567899999887
Q ss_pred cCC
Q 014141 397 PSG 399 (430)
Q Consensus 397 ~~~ 399 (430)
...
T Consensus 246 ~N~ 248 (317)
T 3o53_A 246 GNG 248 (317)
T ss_dssp TCC
T ss_pred CCC
Confidence 654
No 30
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.08 E-value=1.2e-06 Score=87.17 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=100.7
Q ss_pred CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEE---EE-eCCce
Q 014141 160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEI---EI-SAPNL 235 (430)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i---~i-~~P~L 235 (430)
+..+++|++|+|+++.+++ +...|.|+.|.+.+|... .+.. ..+++|+.|.+.++. +..+ .+ ..++|
T Consensus 76 l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L~~N~l~-~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L 146 (487)
T 3oja_A 76 LESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNIS-RVSC-SRGQGKKNIYLANNK-ITMLRDLDEGCRSRV 146 (487)
T ss_dssp CTTCTTCCEEECCSSEEEE------EEECTTCCEEECCSSCCC-CEEE-CCCSSCEEEECCSSC-CCSGGGBCGGGGSSE
T ss_pred cccCCCCCEEEecCCcCCC------CCCCCCcCEEECcCCcCC-CCCc-cccCCCCEEECCCCC-CCCCCchhhcCCCCC
Confidence 4678899999999887764 223488999999888533 2222 345788999888775 2221 22 35788
Q ss_pred eEEEEecceeee----ec-CCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccC---CCCccce
Q 014141 236 LSFKYIGQDINL----HV-GSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR---EFPKLMN 307 (430)
Q Consensus 236 ~~L~~~~~~~~~----~~-~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~---~~~~L~~ 307 (430)
+.|++.+..+.. .+ ..+++|+.+.++.+..... .-...+++|+.|+++.+. +.. +++ .+++|+.
T Consensus 147 ~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-----~~~~~l~~L~~L~Ls~N~-l~~--~~~~~~~l~~L~~ 218 (487)
T 3oja_A 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-----KGQVVFAKLKTLDLSSNK-LAF--MGPEFQSAAGVTW 218 (487)
T ss_dssp EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-----ECCCCCTTCCEEECCSSC-CCE--ECGGGGGGTTCSE
T ss_pred CEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-----cccccCCCCCEEECCCCC-CCC--CCHhHcCCCCccE
Confidence 888887764421 22 2567888888875543321 112357888999988776 332 222 2677888
Q ss_pred EEEEEeecCccchhhHHHHHhhCCCceEEEEEEe
Q 014141 308 LNISFTAANQETLLGLSFIMKACPFLEKLVLQIW 341 (430)
Q Consensus 308 L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~ 341 (430)
|+++... ...+...+..+|+|+.|++...
T Consensus 219 L~Ls~N~-----l~~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 219 ISLRNNK-----LVLIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp EECTTSC-----CCEECTTCCCCTTCCEEECTTC
T ss_pred EEecCCc-----CcccchhhccCCCCCEEEcCCC
Confidence 8774432 1223344667788988888654
No 31
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.07 E-value=2.6e-06 Score=78.27 Aligned_cols=62 Identities=19% Similarity=0.205 Sum_probs=27.1
Q ss_pred CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeec
Q 014141 160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFC 222 (430)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c 222 (430)
+..+++|++|+|.+..+++-. ...+.++++|+.|.+.++..++.+.. -..+++|+.|.+.++
T Consensus 52 ~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n 115 (285)
T 1ozn_A 52 FRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred cccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC
Confidence 345555566655555433210 11234455556665555542322211 112345555555444
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.07 E-value=3.4e-07 Score=96.99 Aligned_cols=149 Identities=13% Similarity=0.124 Sum_probs=89.8
Q ss_pred CCCCCCCCCCCceEEEeeEEEcch----------------hHHHHhh--cCCcccceeeccCCCCceeeE-ecCCCCcce
Q 014141 156 SGCGLSGIKSLRSLTLCAVNVTGE----------------VVEFFIH--NCPLLENLRITQSPDLLSLKV-VGSSIPLKC 216 (430)
Q Consensus 156 ~p~~~~~~~~L~~L~L~~~~~~~~----------------~l~~ll~--~cp~Le~L~L~~~~~~~~~~i-~~~~~~L~~ 216 (430)
+|..+.++++|+.|+|.+..++++ .+..-+. .+++|+.|.|.+|.....+.- -..+++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 666777888889999888887762 1333344 788888888888864433221 134578888
Q ss_pred EEEeecCCccE--EE----------EeCCceeEEEEeccee---ee--ecCCCCCceEEEEEeecCcchhhHHHHhhccC
Q 014141 217 LDIQFCYSIKE--IE----------ISAPNLLSFKYIGQDI---NL--HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYL 279 (430)
Q Consensus 217 L~l~~c~~l~~--i~----------i~~P~L~~L~~~~~~~---~~--~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~ 279 (430)
|.+.++..+.. +. ...|+|+.|.+.+..+ +. .+..+++|+.+.+..+... .+ ..+..+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~l----p~~~~L 594 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HL----EAFGTN 594 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BC----CCCCTT
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cc----hhhcCC
Confidence 88877652221 10 1235788888776643 22 3556777777777644332 11 134566
Q ss_pred CCceEEEEecceeeecccccCC---CCc-cceEEEEE
Q 014141 280 PQLKTLELDGCNEVFAQFSQRE---FPK-LMNLNISF 312 (430)
Q Consensus 280 ~~l~~L~l~~~~~~~~~~l~~~---~~~-L~~L~l~~ 312 (430)
++|+.|.+..+. +. .+|.. +++ |++|+|+.
T Consensus 595 ~~L~~L~Ls~N~-l~--~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 595 VKLTDLKLDYNQ-IE--EIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp SEESEEECCSSC-CS--CCCTTSCEECTTCCEEECCS
T ss_pred CcceEEECcCCc-cc--cchHHHhhccccCCEEECcC
Confidence 777777776665 33 33333 445 66666643
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.03 E-value=8e-06 Score=82.62 Aligned_cols=128 Identities=14% Similarity=0.041 Sum_probs=63.5
Q ss_pred CCCCCCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE-----
Q 014141 155 QSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE----- 229 (430)
Q Consensus 155 ~~p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~----- 229 (430)
.+|..+..+ +|++|.+.++.+.. +.. ..+|.|+.|.+.++........ ..+++|+.|.+.++. +..+.
T Consensus 296 ~l~~~~~~~-~L~~L~l~~n~~~~--l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~ 368 (570)
T 2z63_A 296 RVKDFSYNF-GWQHLELVNCKFGQ--FPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNG-LSFKGCCSQS 368 (570)
T ss_dssp SCCBCCSCC-CCSEEEEESCBCSS--CCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSC-CBEEEEEEHH
T ss_pred hhhhhhccC-CccEEeeccCcccc--cCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCc-cCcccccccc
Confidence 345555566 77777777776542 111 3566777777766643322221 344666666666554 22221
Q ss_pred -EeCCceeEEEEeccee---eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141 230 -ISAPNLLSFKYIGQDI---NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 291 (430)
Q Consensus 230 -i~~P~L~~L~~~~~~~---~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~ 291 (430)
...++|++|.+.+... +..+..+++|+.+.+..+....... ...+..+++|+.|++..+.
T Consensus 369 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~ 432 (570)
T 2z63_A 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHTH 432 (570)
T ss_dssp HHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTT--SCTTTTCTTCCEEECTTSC
T ss_pred ccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccc--hhhhhcCCCCCEEeCcCCc
Confidence 1245666666655422 1124455666666554322111000 0123455566666665544
No 34
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.02 E-value=1.8e-06 Score=84.99 Aligned_cols=81 Identities=14% Similarity=0.045 Sum_probs=35.6
Q ss_pred CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEEE----eC
Q 014141 159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEI----SA 232 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~i----~~ 232 (430)
.+.++++|++|+|.+..+++-. ...+.++++|+.|.|.++.. +.+.. -..+++|+.|.+.++. +..+.- ..
T Consensus 94 ~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l 170 (452)
T 3zyi_A 94 TFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRV 170 (452)
T ss_dssp TTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC-SBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTC
T ss_pred HcCCCCCCCEEECCCCccCCcC-hhhccCcccCCEEECCCCcC-CccChhhhcccCCCCEEECCCCC-cceeCHhHHhcC
Confidence 3445566666666655443211 11234555666666655531 11110 1123555555555543 232221 23
Q ss_pred CceeEEEEec
Q 014141 233 PNLLSFKYIG 242 (430)
Q Consensus 233 P~L~~L~~~~ 242 (430)
|+|+.|++.+
T Consensus 171 ~~L~~L~l~~ 180 (452)
T 3zyi_A 171 PSLMRLDLGE 180 (452)
T ss_dssp TTCCEEECCC
T ss_pred CcccEEeCCC
Confidence 4555555544
No 35
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.00 E-value=5.2e-06 Score=78.98 Aligned_cols=119 Identities=15% Similarity=0.078 Sum_probs=68.2
Q ss_pred ccHhHHHHHHhhcCcEEEEEEcCCCC-CCCceeeccccccccCCCCCCCCCCCCceEEEeeEEEc--------chhHHHH
Q 014141 114 CNITNWVNTAIAKNVRNFELDLSPGT-YDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVT--------GEVVEFF 184 (430)
Q Consensus 114 ~~v~~wl~~~~~~~v~~L~l~~~~~~-~~~~~~lp~~~~~~l~~p~~~~~~~~L~~L~L~~~~~~--------~~~l~~l 184 (430)
..+.+++.......+++|.+..+... ......++ .+......|++|+.|.+..+... ..++..+
T Consensus 95 ~~~~~fl~~~~~~~v~~L~lg~~~~~~~~~~~~~~-------~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~l 167 (362)
T 2ra8_A 95 NLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIAD-------GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPV 167 (362)
T ss_dssp CHHHHHHHCTTGGGCSEEEECCCCSSSCCSHHHHH-------HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHH
T ss_pred HHHHHHhcCCCchhcceEEEcccccCCCcHHHHHH-------HHHHhhhhcchhhheeecCcchhhcccccccccCHHHH
Confidence 34455555444456888888755311 00000000 01112346799999999765332 1247788
Q ss_pred hhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCC----ccEEE-EeCCceeEEEEe
Q 014141 185 IHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYS----IKEIE-ISAPNLLSFKYI 241 (430)
Q Consensus 185 l~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~----l~~i~-i~~P~L~~L~~~ 241 (430)
+..+|+|++|.|.++.++....+ .+++|++|.+..|.- +..+. ...|+|+.|++.
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGKK--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCSC--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCCCceeccc--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 99999999999998854332222 247888888876651 11111 145777777753
No 36
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.00 E-value=8.6e-07 Score=85.37 Aligned_cols=180 Identities=16% Similarity=0.130 Sum_probs=115.2
Q ss_pred CCCCCCceEEEeeEEEcch---hHHHHhhcCCcccceeeccCCCCce--eeEec---CC---------CCcceEEEeecC
Q 014141 161 SGIKSLRSLTLCAVNVTGE---VVEFFIHNCPLLENLRITQSPDLLS--LKVVG---SS---------IPLKCLDIQFCY 223 (430)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~~~~~~~--~~i~~---~~---------~~L~~L~l~~c~ 223 (430)
.++++|++|+|+++.+++. .+...+..|++|+.|.|.+|..-.. ..+.. .+ ++|+.|.+.++.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 4678899999998888764 3555677899999999988853110 01111 11 688889888776
Q ss_pred Cc-cEEE------EeCCceeEEEEecceee------e---ecCCCCCceEEEEEeecCcch-hhHHHHhhccCCCceEEE
Q 014141 224 SI-KEIE------ISAPNLLSFKYIGQDIN------L---HVGSLPQLVDVVFHVTPMVQK-MHCIGSIVSYLPQLKTLE 286 (430)
Q Consensus 224 ~l-~~i~------i~~P~L~~L~~~~~~~~------~---~~~~~~~L~~~~i~~~~~~~~-~~~~~~l~~~~~~l~~L~ 286 (430)
-- ..+. -..++|++|.+.++.+. + .+..+++|+.+.+..+..... ...+...+..+++|+.|.
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 21 1111 14578999988876443 1 345788899998886543211 123345678899999999
Q ss_pred Eecceeeecc---cccC-----CCCccceEEEEEeecCccchhhHHHHH-hhCCCceEEEEEEe
Q 014141 287 LDGCNEVFAQ---FSQR-----EFPKLMNLNISFTAANQETLLGLSFIM-KACPFLEKLVLQIW 341 (430)
Q Consensus 287 l~~~~~~~~~---~l~~-----~~~~L~~L~l~~~~~~~~~~~~l~~lL-~~~p~L~~L~l~~~ 341 (430)
+..+. +... .++. .+++|++|+|+.+.-.......+...+ .++|+|+.|++...
T Consensus 251 L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 251 LNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp CTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred CCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 98876 4322 1222 278899999865432222222355655 67899999998553
No 37
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.99 E-value=4.1e-06 Score=85.57 Aligned_cols=97 Identities=15% Similarity=0.158 Sum_probs=46.7
Q ss_pred CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE------EeC
Q 014141 159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE------ISA 232 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~------i~~ 232 (430)
.+..+++|++|++.++.+. .+..+ .+|.|+.|.+.++.....+.+ ..+++|+.|.+.++. +..+. ...
T Consensus 302 ~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~ 375 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKK-VALPSLSYLDLSRNA-LSFSGCCSYSDLGT 375 (606)
T ss_dssp CCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCC-CCCTTCCEEECCSSC-EEEEEECCHHHHCC
T ss_pred hccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhh-ccCCCCCEEECcCCc-cCCCcchhhhhccC
Confidence 4445566666666666552 22222 566666666666644433322 234556666665543 22221 123
Q ss_pred CceeEEEEecceee---eecCCCCCceEEEEE
Q 014141 233 PNLLSFKYIGQDIN---LHVGSLPQLVDVVFH 261 (430)
Q Consensus 233 P~L~~L~~~~~~~~---~~~~~~~~L~~~~i~ 261 (430)
++|++|.+.+.... ..+.++++|+.+.+.
T Consensus 376 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~ 407 (606)
T 3vq2_A 376 NSLRHLDLSFNGAIIMSANFMGLEELQHLDFQ 407 (606)
T ss_dssp SCCCEEECCSCSEEEECCCCTTCTTCCEEECT
T ss_pred CcccEeECCCCccccchhhccCCCCCCeeECC
Confidence 55666655544321 223345555555554
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.99 E-value=1.8e-06 Score=83.14 Aligned_cols=97 Identities=15% Similarity=0.099 Sum_probs=42.1
Q ss_pred CceeEEEEecceee-eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecc--cccCCCCccceEE
Q 014141 233 PNLLSFKYIGQDIN-LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ--FSQREFPKLMNLN 309 (430)
Q Consensus 233 P~L~~L~~~~~~~~-~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~--~l~~~~~~L~~L~ 309 (430)
++|+.|++.+.... +.....++|+.+.+..+..... ..+..+++|+.|++..+. +... .....+++|++|+
T Consensus 205 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-----AWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLY 278 (390)
T ss_dssp SSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEE
T ss_pred CcceEEECCCCeeeeccccccccccEEECCCCCCccc-----HHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEE
Confidence 34555555544331 1222234555555554332211 234556666666666554 2211 0111255566665
Q ss_pred EEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141 310 ISFTAANQETLLGLSFIMKACPFLEKLVLQI 340 (430)
Q Consensus 310 l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~ 340 (430)
++...-. .+......+|+|+.|++..
T Consensus 279 L~~n~l~-----~~~~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 279 ISNNRLV-----ALNLYGQPIPTLKVLDLSH 304 (390)
T ss_dssp CCSSCCC-----EEECSSSCCTTCCEEECCS
T ss_pred CCCCcCc-----ccCcccCCCCCCCEEECCC
Confidence 5332111 1111224456666666643
No 39
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.98 E-value=4.1e-06 Score=85.59 Aligned_cols=133 Identities=23% Similarity=0.221 Sum_probs=67.1
Q ss_pred CCCCCCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEE---
Q 014141 155 QSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIE--- 229 (430)
Q Consensus 155 ~~p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~--- 229 (430)
.+|..+.++++|++|+|.++.+.+. ....+..+|+|+.|.+.++.....+.. -..+++|+.|.+.++. +..+.
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~ 369 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCN 369 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEEST
T ss_pred CCChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcc
Confidence 3455666777777777777765432 112345677777777776643222111 1234667777766654 33332
Q ss_pred --E-eCCceeEEEEecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141 230 --I-SAPNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 291 (430)
Q Consensus 230 --i-~~P~L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~ 291 (430)
+ ..|+|++|++.+.... ..+..+++|+.+.+..+....... ...+..+++|+.|++..+.
T Consensus 370 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA--QSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT--CCTTTTCTTCCEEECTTCC
T ss_pred hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc--chhhhCcccCCEEECCCCc
Confidence 1 2356666666655331 123445666666655332211000 0123455556666655544
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.97 E-value=2.9e-06 Score=77.92 Aligned_cols=205 Identities=13% Similarity=0.059 Sum_probs=117.1
Q ss_pred CCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEE---E-eCCcee
Q 014141 163 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIE---I-SAPNLL 236 (430)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~---i-~~P~L~ 236 (430)
.++|++|+|.+..+++-. ...+..+++|+.|.|.++. ++.+.. -..+++|+.|.+.++..+..+. + ..++|+
T Consensus 31 ~~~l~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108 (285)
T ss_dssp CTTCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred CCCceEEEeeCCcCCccC-HHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence 479999999988765421 1235789999999999884 333321 1345889999998876444442 1 347888
Q ss_pred EEEEecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeeccc--ccCCCCccceEEE
Q 014141 237 SFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNLNI 310 (430)
Q Consensus 237 ~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~--l~~~~~~L~~L~l 310 (430)
+|++.+..+. ..+.++++|+.+.+..+...... ...+..+++|+.|++..+. +.... ....+++|++|++
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP---DDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC---HhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEEC
Confidence 8888776442 12456777887777654332110 0334667788888887665 32111 1112567777776
Q ss_pred EEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCccccc-cCcCCCccEEEEee--eecChhhHHHHHHH
Q 014141 311 SFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KHSHQHLKLVELQG--FNGREIDFELAFYV 383 (430)
Q Consensus 311 ~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~v~i~~--~~g~~~e~~l~~~l 383 (430)
....-... ....+..+++|+.|++....- .. ..+. -..+++|+.+.+.+ +.+......+.+.+
T Consensus 185 ~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l----~~--~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l 250 (285)
T 1ozn_A 185 HQNRVAHV----HPHAFRDLGRLMTLYLFANNL----SA--LPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL 250 (285)
T ss_dssp CSSCCCEE----CTTTTTTCTTCCEEECCSSCC----SC--CCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred CCCccccc----CHhHccCcccccEeeCCCCcC----Cc--CCHHHcccCcccCEEeccCCCccCCCCcHHHHHHH
Confidence 44321111 123455677888877744211 10 1001 12356777777766 33444444444443
No 41
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.97 E-value=6.5e-06 Score=80.68 Aligned_cols=206 Identities=16% Similarity=0.069 Sum_probs=113.4
Q ss_pred CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEEE----eC
Q 014141 159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEI----SA 232 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~i----~~ 232 (430)
.+.++++|++|+|.+..+..-. ...+.++++|+.|.|.++. ++.+.. -..+++|+.|.+.++. +..+.- ..
T Consensus 83 ~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l 159 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRI 159 (440)
T ss_dssp TTSSCSSCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTC
T ss_pred HhhCCCCCCEEECCCCcCCccC-hhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhC
Confidence 4567788888888877654321 1235678888888888773 222211 1244778888887765 343321 34
Q ss_pred CceeEEEEecc-eee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecc--cccCCCCcc
Q 014141 233 PNLLSFKYIGQ-DIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ--FSQREFPKL 305 (430)
Q Consensus 233 P~L~~L~~~~~-~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~--~l~~~~~~L 305 (430)
|+|+.|++.+. ... ..+.++++|+.+.+..+..... .-+..+++|+.|++..+. +... .....+++|
T Consensus 160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 233 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-----PNLTPLIKLDELDLSGNH-LSAIRPGSFQGLMHL 233 (440)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-----CCCTTCSSCCEEECTTSC-CCEECTTTTTTCTTC
T ss_pred cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-----cccCCCcccCEEECCCCc-cCccChhhhccCccC
Confidence 77888877653 111 1345677777777764432211 124566778888887765 3221 111125667
Q ss_pred ceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCccccc--cCcCCCccEEEEee--eecChhhHHHHH
Q 014141 306 MNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS--KHSHQHLKLVELQG--FNGREIDFELAF 381 (430)
Q Consensus 306 ~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~--~~~~~~L~~v~i~~--~~g~~~e~~l~~ 381 (430)
++|++....-... ....+..+++|+.|+|....- . ..+. -..+++|+.+.+.+ +..+..-..+..
T Consensus 234 ~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l----~---~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~ 302 (440)
T 3zyj_A 234 QKLWMIQSQIQVI----ERNAFDNLQSLVEINLAHNNL----T---LLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSW 302 (440)
T ss_dssp CEEECTTCCCCEE----CTTSSTTCTTCCEEECTTSCC----C---CCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHH
T ss_pred CEEECCCCceeEE----ChhhhcCCCCCCEEECCCCCC----C---ccChhHhccccCCCEEEcCCCCccCCCCchHHHH
Confidence 7776633211111 123456778888888744211 1 1111 12357888888877 445554444444
Q ss_pred HHH
Q 014141 382 YVF 384 (430)
Q Consensus 382 ~ll 384 (430)
++-
T Consensus 303 ~~~ 305 (440)
T 3zyj_A 303 WIK 305 (440)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 42
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.96 E-value=2e-06 Score=87.83 Aligned_cols=123 Identities=11% Similarity=0.099 Sum_probs=85.0
Q ss_pred CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEE-eCCceeEE
Q 014141 160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI-SAPNLLSF 238 (430)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i-~~P~L~~L 238 (430)
+..+++|+.|.+.++.+..- . .+..+++|++|.+.+|.. +.+.-. .+++|+.|.+.++.....+.+ ..|+|++|
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l--~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L 355 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYL--E-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYL 355 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCC--C-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEE
T ss_pred cccCCCCCEEEecCccchhh--h-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEE
Confidence 66789999999998877542 2 467889999999999865 333211 568999999998865554433 56899999
Q ss_pred EEecceee------eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141 239 KYIGQDIN------LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 291 (430)
Q Consensus 239 ~~~~~~~~------~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~ 291 (430)
++.+.... ..+..+++|+.+.+..+..... ...+..+++|+.|.+..+.
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM----SANFMGLEELQHLDFQHST 410 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE----CCCCTTCTTCCEEECTTSE
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCCccccc----hhhccCCCCCCeeECCCCc
Confidence 98877442 2345788899988875432210 0234556677777776655
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.94 E-value=7.1e-06 Score=80.72 Aligned_cols=123 Identities=18% Similarity=0.172 Sum_probs=57.8
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCCccEEEE----eCCceeE
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIEI----SAPNLLS 237 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~l~~i~i----~~P~L~~ 237 (430)
++|+.|+|.+..++.-. ...+..+++|+.|.|.++. ++.+... ..+++|+.|.+.++. +..+.- ..++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQ-ADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCE
T ss_pred CCccEEECcCCcCceEC-HHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCE
Confidence 56666666666543311 1124556666666666653 2222111 234566666666554 332211 2456666
Q ss_pred EEEecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141 238 FKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 291 (430)
Q Consensus 238 L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~ 291 (430)
|++.+..+. ..+..+++|+.+.+..+.....+.. ..+.++++|+.|.+..+.
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~--~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE--GAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT--TTTTTCTTCCEEECTTSC
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh--hhccCCCCCCEEECCCCc
Confidence 666655332 1234556666666553221111000 223455555666555444
No 44
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.94 E-value=1.7e-06 Score=77.87 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhh
Q 014141 23 FSRFPDDILIHIISGLTLKEAARTSVLSSRWKYL 56 (430)
Q Consensus 23 is~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~l 56 (430)
|+.||+||+.+|||||+.+|+++++.|||+||.+
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999999999973
No 45
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.92 E-value=4e-06 Score=76.39 Aligned_cols=36 Identities=22% Similarity=0.625 Sum_probs=34.2
Q ss_pred ccCCCCCHHHHHHHHhcCChHHHH-HHHHhhhhhhhh
Q 014141 21 DWFSRFPDDILIHIISGLTLKEAA-RTSVLSSRWKYL 56 (430)
Q Consensus 21 d~is~LPdeiL~~Ils~L~~~d~~-rts~vSrrWr~l 56 (430)
..+..||||+|..||++||.++++ |+++|||+|+.+
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 468899999999999999999999 999999999986
No 46
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.92 E-value=3.4e-06 Score=77.89 Aligned_cols=148 Identities=22% Similarity=0.207 Sum_probs=82.0
Q ss_pred CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEEeCCceeEE
Q 014141 159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSF 238 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L 238 (430)
.+..+++|++|+|.+..+++-. . +..+++|+.|.+.++.. +.+..-..+++|+.|.+.++. +..+.
T Consensus 63 ~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~n~-i~~~~--------- 128 (291)
T 1h6t_A 63 GIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKV-KDLSSLKDLKKLKSLSLEHNG-ISDIN--------- 128 (291)
T ss_dssp TGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCC-CCGGGGTTCTTCCEEECTTSC-CCCCG---------
T ss_pred hHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcC-CCChhhccCCCCCEEECCCCc-CCCCh---------
Confidence 3457788888888888776522 1 67888888888888742 222222345677777777664 22211
Q ss_pred EEecceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeecCcc
Q 014141 239 KYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQE 318 (430)
Q Consensus 239 ~~~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 318 (430)
.+..+++|+.+.+..+..... ..+..+++|+.|.+..+. +........+++|++|+++...-.
T Consensus 129 ---------~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~L~~N~i~-- 191 (291)
T 1h6t_A 129 ---------GLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKNHIS-- 191 (291)
T ss_dssp ---------GGGGCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCC--
T ss_pred ---------hhcCCCCCCEEEccCCcCCcc-----hhhccCCCCCEEEccCCc-cccchhhcCCCccCEEECCCCcCC--
Confidence 122344444444443222111 234566777777776665 332211223667777776443211
Q ss_pred chhhHHHHHhhCCCceEEEEEEe
Q 014141 319 TLLGLSFIMKACPFLEKLVLQIW 341 (430)
Q Consensus 319 ~~~~l~~lL~~~p~L~~L~l~~~ 341 (430)
.+.. +..+++|+.|++...
T Consensus 192 ---~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 192 ---DLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp ---BCGG-GTTCTTCSEEEEEEE
T ss_pred ---CChh-hccCCCCCEEECcCC
Confidence 1112 566777777777654
No 47
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.92 E-value=8.8e-06 Score=80.53 Aligned_cols=174 Identities=22% Similarity=0.174 Sum_probs=77.0
Q ss_pred CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee-EecCCCCcceEEEeecCCccEEEE---eCCc
Q 014141 159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFCYSIKEIEI---SAPN 234 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~-i~~~~~~L~~L~l~~c~~l~~i~i---~~P~ 234 (430)
.+.++++|++|+|.++.++.- ....+..+++|+.|.|.++....... .-..+++|+.|.+.++..+..+.- ..++
T Consensus 147 ~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 147 AFSGLNSLEQLTLEKCNLTSI-PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp SSTTCTTCCEEEEESCCCSSC-CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred hccCCCCCCEEECCCCcCccc-ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 344555555555555544321 12234455666666665553211100 011335566666665554333321 1235
Q ss_pred eeEEEEecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeeccc--ccCCCCccceE
Q 014141 235 LLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNL 308 (430)
Q Consensus 235 L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~--l~~~~~~L~~L 308 (430)
|++|++.+..+. ..+..+++|+.+.+..+...... ...+..+++|+.|.+..+. +.... ....+++|+.|
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 301 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE---GSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVL 301 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC---TTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEE
T ss_pred ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC---hhhccccccCCEEECCCCc-cceECHHHhcCcccCCEE
Confidence 666666555331 12345566666665543322100 0223455666666665554 22110 01124556666
Q ss_pred EEEEeecCccchhhHHHHHhhCCCceEEEEEEe
Q 014141 309 NISFTAANQETLLGLSFIMKACPFLEKLVLQIW 341 (430)
Q Consensus 309 ~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~ 341 (430)
+|+...-.... ...+..+++|+.|++...
T Consensus 302 ~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 302 NVSGNQLTTLE----ESVFHSVGNLETLILDSN 330 (477)
T ss_dssp ECCSSCCSCCC----GGGBSCGGGCCEEECCSS
T ss_pred ECCCCcCceeC----HhHcCCCcccCEEEccCC
Confidence 65432111111 123445566666666543
No 48
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.91 E-value=5.5e-06 Score=69.75 Aligned_cols=38 Identities=5% Similarity=0.156 Sum_probs=17.7
Q ss_pred CCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCc
Q 014141 165 SLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLL 203 (430)
Q Consensus 165 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~ 203 (430)
+|+.|+|+++.+++..+..+ ++|++|+.|.|.+|..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~It 99 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIE 99 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCC
T ss_pred eEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccC
Confidence 34445555444444444332 345555555555554443
No 49
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.91 E-value=5.5e-06 Score=81.37 Aligned_cols=62 Identities=23% Similarity=0.158 Sum_probs=32.9
Q ss_pred HhhccCCCceEEEEecceeeeccc--ccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141 274 SIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI 340 (430)
Q Consensus 274 ~l~~~~~~l~~L~l~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~ 340 (430)
..+..+++|+.|++..+. +.... ....+++|++|+++...-... ....+..+++|++|++..
T Consensus 293 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~ 356 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSI----DSRMFENLDKLEVLDLSY 356 (455)
T ss_dssp TTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEE----CGGGGTTCTTCCEEECCS
T ss_pred hhcccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCccCCc----ChhHhcCcccCCEEECCC
Confidence 335667778888776665 32111 111256677777644321111 123456677777777754
No 50
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.91 E-value=1.8e-06 Score=72.66 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=53.5
Q ss_pred CCCCCCceEEEeeE-EEcchhHHHHhhc---CCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCCcc
Q 014141 161 SGIKSLRSLTLCAV-NVTGEVVEFFIHN---CPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIK 226 (430)
Q Consensus 161 ~~~~~L~~L~L~~~-~~~~~~l~~ll~~---cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~l~ 226 (430)
.++++|++|+|.+| .++|..+..+-.. ||.|++|+|.+|..+++-.+. +.+++|++|.+.+|+.+.
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 47899999999999 5899989887763 899999999999988753222 356889999998887544
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.90 E-value=2.4e-06 Score=87.27 Aligned_cols=81 Identities=19% Similarity=0.130 Sum_probs=39.8
Q ss_pred hccCCCceEEEEecceeeecc-cccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCcccc
Q 014141 276 VSYLPQLKTLELDGCNEVFAQ-FSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQI 354 (430)
Q Consensus 276 ~~~~~~l~~L~l~~~~~~~~~-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~ 354 (430)
+..+++|+.|.+..+. +... .....+++|+.|+|+...-. .+..-+..+|+|+.|++....- ...
T Consensus 274 ~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l~-----~i~~~~~~l~~L~~L~L~~N~l----~~~---- 339 (597)
T 3oja_B 274 FVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-----HVERNQPQFDRLENLYLDHNSI----VTL---- 339 (597)
T ss_dssp GTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCCC-----CCGGGHHHHTTCSEEECCSSCC----CCC----
T ss_pred hcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCCC-----ccCcccccCCCCCEEECCCCCC----CCc----
Confidence 3455666666665554 2211 11112566777766443211 2222345667777777744221 000
Q ss_pred ccCcCCCccEEEEeee
Q 014141 355 SKHSHQHLKLVELQGF 370 (430)
Q Consensus 355 ~~~~~~~L~~v~i~~~ 370 (430)
....+++|+.+.+.+-
T Consensus 340 ~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 340 KLSTHHTLKNLTLSHN 355 (597)
T ss_dssp CCCTTCCCSEEECCSS
T ss_pred ChhhcCCCCEEEeeCC
Confidence 1234567888888763
No 52
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.88 E-value=1.9e-05 Score=75.95 Aligned_cols=191 Identities=17% Similarity=0.140 Sum_probs=111.9
Q ss_pred CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe------------------cCCCCcceEEEee
Q 014141 160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV------------------GSSIPLKCLDIQF 221 (430)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~------------------~~~~~L~~L~l~~ 221 (430)
+.++++|++|+|.+..+..- ....+..+++|+.|.+.++.. +.+.+. ...++|+.|.+.+
T Consensus 137 ~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~ 214 (390)
T 3o6n_A 137 FHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 214 (390)
T ss_dssp TTTCTTCCEEECCSSCCCBC-CTTTTSSCTTCCEEECCSSCC-SBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCS
T ss_pred hcCCCCCcEEECCCCccCcc-ChhhccCCCCCCEEECCCCcC-CccccccccccceeecccccccccCCCCcceEEECCC
Confidence 35667777777776655431 112245667777777766532 111110 0114566666655
Q ss_pred cCCccEEEE-eCCceeEEEEecceee--eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeeccc-
Q 014141 222 CYSIKEIEI-SAPNLLSFKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF- 297 (430)
Q Consensus 222 c~~l~~i~i-~~P~L~~L~~~~~~~~--~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~- 297 (430)
+. +..+.. ..++|+.|.+.+.... -.+..+++|+.+.+..+...... ...+..+++|+.|.+..+. +....
T Consensus 215 n~-l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n~-l~~~~~ 289 (390)
T 3o6n_A 215 NS-INVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM---YHPFVKMQRLERLYISNNR-LVALNL 289 (390)
T ss_dssp SC-CCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEE---SGGGTTCSSCCEEECCSSC-CCEEEC
T ss_pred Ce-eeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcC---hhHccccccCCEEECCCCc-CcccCc
Confidence 54 333322 2468999998877442 23567889999998865433211 1445778999999998876 43211
Q ss_pred ccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCccccccCcCCCccEEEEeee
Q 014141 298 SQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGF 370 (430)
Q Consensus 298 l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~ 370 (430)
....+++|++|+++...-. .+..-+..+|+|+.|++....- ... ....+++|+.+.+.+-
T Consensus 290 ~~~~l~~L~~L~L~~n~l~-----~~~~~~~~l~~L~~L~L~~N~i----~~~----~~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 290 YGQPIPTLKVLDLSHNHLL-----HVERNQPQFDRLENLYLDHNSI----VTL----KLSTHHTLKNLTLSHN 349 (390)
T ss_dssp SSSCCTTCCEEECCSSCCC-----CCGGGHHHHTTCSEEECCSSCC----CCC----CCCTTCCCSEEECCSS
T ss_pred ccCCCCCCCEEECCCCcce-----ecCccccccCcCCEEECCCCcc----cee----CchhhccCCEEEcCCC
Confidence 1123789999998654221 2233356789999999965321 111 1234578999988873
No 53
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.88 E-value=2.9e-05 Score=76.82 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=18.3
Q ss_pred CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccC
Q 014141 160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQS 199 (430)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~ 199 (430)
+.++++|++|+|.+..++.-. ...+.++++|+.|.|.++
T Consensus 76 ~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n 114 (477)
T 2id5_A 76 FNNLFNLRTLGLRSNRLKLIP-LGVFTGLSNLTKLDISEN 114 (477)
T ss_dssp TTTCTTCCEEECCSSCCCSCC-TTSSTTCTTCCEEECTTS
T ss_pred hhCCccCCEEECCCCcCCccC-cccccCCCCCCEEECCCC
Confidence 345555555555554443210 112344555555555554
No 54
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.87 E-value=7.2e-06 Score=80.81 Aligned_cols=160 Identities=19% Similarity=0.132 Sum_probs=94.1
Q ss_pred CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEE-eCCceeEE
Q 014141 160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI-SAPNLLSF 238 (430)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i-~~P~L~~L 238 (430)
+..+++|++|+|.+..+++-. +..+++|+.|.+.++. ++.+.+ ..+++|+.|.+.++. +..+.+ ..++|+.|
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L~~N~-l~~l~~-~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L 153 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNK-LTKLDV-SQNPLLTYLNCARNT-LTEIDVSHNTQLTEL 153 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECCSSC-CSCCCC-TTCTTCCEEECTTSC-CSCCCCTTCTTCCEE
T ss_pred cccCCCCCEEECcCCCCceee----cCCCCcCCEEECCCCc-CCeecC-CCCCcCCEEECCCCc-cceeccccCCcCCEE
Confidence 456677777777776665421 5567777777777663 232332 344667777776654 333333 34667777
Q ss_pred EEecce-e-eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeecC
Q 014141 239 KYIGQD-I-NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAAN 316 (430)
Q Consensus 239 ~~~~~~-~-~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 316 (430)
.+.+.. . .+.+..+++|+.+.+..+.... . . +..+++|+.|.+..+. +.... ...+++|++|+++...-.
T Consensus 154 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l----~-l~~l~~L~~L~l~~N~-l~~~~-l~~l~~L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 154 DCHLNKKITKLDVTPQTQLTTLDCSFNKITE-L----D-VSQNKLLNRLNCDTNN-ITKLD-LNQNIQLTFLDCSSNKLT 225 (457)
T ss_dssp ECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-C----C-CTTCTTCCEEECCSSC-CSCCC-CTTCTTCSEEECCSSCCS
T ss_pred ECCCCCcccccccccCCcCCEEECCCCccce-e----c-cccCCCCCEEECcCCc-CCeec-cccCCCCCEEECcCCccc
Confidence 766552 1 2345566777777776443322 1 1 4567788888887665 33221 123678888887553221
Q ss_pred ccchhhHHHHHhhCCCceEEEEEEe
Q 014141 317 QETLLGLSFIMKACPFLEKLVLQIW 341 (430)
Q Consensus 317 ~~~~~~l~~lL~~~p~L~~L~l~~~ 341 (430)
.+. +..+++|+.|++...
T Consensus 226 -----~ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 226 -----EID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp -----CCC--CTTCTTCSEEECCSS
T ss_pred -----ccC--ccccCCCCEEEeeCC
Confidence 122 668899999988653
No 55
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.87 E-value=1e-05 Score=74.59 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=53.1
Q ss_pred CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE--EeCCceeE
Q 014141 160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLLS 237 (430)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~--i~~P~L~~ 237 (430)
+.++++|+.|.|.+..+++ +.. +..+++|+.|.+.++. ++.+..-..+++|+.|.+.++. +..+. -..++|+.
T Consensus 86 l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n~-i~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~ 160 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDT 160 (291)
T ss_dssp GTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSE
T ss_pred cccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECCCCc-CCCChhhcCCCCCCEEEccCCc-CCcchhhccCCCCCE
Confidence 5689999999999998765 222 7889999999999985 3333222355788888888775 32221 02345555
Q ss_pred EEEecc
Q 014141 238 FKYIGQ 243 (430)
Q Consensus 238 L~~~~~ 243 (430)
|.+.+.
T Consensus 161 L~L~~N 166 (291)
T 1h6t_A 161 LSLEDN 166 (291)
T ss_dssp EECCSS
T ss_pred EEccCC
Confidence 555444
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.87 E-value=2.6e-06 Score=83.54 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=24.3
Q ss_pred CCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeec
Q 014141 161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFC 222 (430)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c 222 (430)
.++++|++|+|.+..+..- -...+..+++|+.|.|.++..+..+... ..+++|+.|.+.++
T Consensus 133 ~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp CSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred hccccCceeeCCCCccccc-CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence 3444555555544433210 0112334455555555444433332211 12344555554444
No 57
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.83 E-value=7.8e-07 Score=91.59 Aligned_cols=173 Identities=11% Similarity=0.121 Sum_probs=101.0
Q ss_pred CCCCCCCCCCCceEEEeeEEEcch----------------hHHHHhh--cCCcccceeeccCCCCceeeE-ecCCCCcce
Q 014141 156 SGCGLSGIKSLRSLTLCAVNVTGE----------------VVEFFIH--NCPLLENLRITQSPDLLSLKV-VGSSIPLKC 216 (430)
Q Consensus 156 ~p~~~~~~~~L~~L~L~~~~~~~~----------------~l~~ll~--~cp~Le~L~L~~~~~~~~~~i-~~~~~~L~~ 216 (430)
+|..+.++++|++|+|.+..+++. .+..-+. .+++|+.|.|.+|.....+.- -..+++|+.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 566777889999999998887662 1344455 788899999988864433221 124578888
Q ss_pred EEEeecCCccE--EE--Ee-------CCceeEEEEeccee---ee--ecCCCCCceEEEEEeecCcchhhHHHHhhccCC
Q 014141 217 LDIQFCYSIKE--IE--IS-------APNLLSFKYIGQDI---NL--HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLP 280 (430)
Q Consensus 217 L~l~~c~~l~~--i~--i~-------~P~L~~L~~~~~~~---~~--~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~ 280 (430)
|.+.++..+.. +. +. .++|+.|.+.+..+ +. .++.+++|+.+.+..+.....+. -+..++
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip----~~~~l~ 353 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP----AFGSEI 353 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC----CCEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh----hhCCCC
Confidence 88887752221 11 11 27888888876643 22 45677788888776544331111 234556
Q ss_pred CceEEEEecceeeecccccCC---CCc-cceEEEEEeecCccchhhHHHHHhh--CCCceEEEEEE
Q 014141 281 QLKTLELDGCNEVFAQFSQRE---FPK-LMNLNISFTAANQETLLGLSFIMKA--CPFLEKLVLQI 340 (430)
Q Consensus 281 ~l~~L~l~~~~~~~~~~l~~~---~~~-L~~L~l~~~~~~~~~~~~l~~lL~~--~p~L~~L~l~~ 340 (430)
+|+.|.+..+. +. .+|.. +++ |++|+++...-. .+...+.. +++|+.|++..
T Consensus 354 ~L~~L~L~~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~l~-----~lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 354 KLASLNLAYNQ-IT--EIPANFCGFTEQVENLSFAHNKLK-----YIPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp EESEEECCSSE-EE--ECCTTSEEECTTCCEEECCSSCCS-----SCCSCCCTTCSSCEEEEECCS
T ss_pred CCCEEECCCCc-cc--cccHhhhhhcccCcEEEccCCcCc-----ccchhhhhcccCccCEEECcC
Confidence 77777776665 33 33333 445 666666433211 12222222 23677776644
No 58
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.83 E-value=2.2e-06 Score=79.84 Aligned_cols=190 Identities=18% Similarity=0.075 Sum_probs=97.0
Q ss_pred cHhHHHHHHhhcCcEEEEEEcCCCCCCCceeeccccccccCCCCCC--CCCCCCceEEEeeEEEcch--hHH-HHhhcCC
Q 014141 115 NITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGL--SGIKSLRSLTLCAVNVTGE--VVE-FFIHNCP 189 (430)
Q Consensus 115 ~v~~wl~~~~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~~p~~~--~~~~~L~~L~L~~~~~~~~--~l~-~ll~~cp 189 (430)
.+..........++++|++....-.. ..|..+ ..+++|++|+|.+..+.+. .+. .-+..+|
T Consensus 80 ~~~~~~~~~~~~~L~~L~l~~n~l~~--------------~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~ 145 (310)
T 4glp_A 80 LLVGALRVLAYSRLKELTLEDLKITG--------------TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP 145 (310)
T ss_dssp HHHHHHHHHHHSCCCEEEEESCCCBS--------------CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred HHHHHHHhcccCceeEEEeeCCEecc--------------chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence 44555555555679999987653221 112223 5789999999999988752 122 2244899
Q ss_pred cccceeeccCCCCcee-eEecCCCCcceEEEeecCCccEEEEeCCceeEEEEecceeeeecCCCCCceEEEEEeecCcch
Q 014141 190 LLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQK 268 (430)
Q Consensus 190 ~Le~L~L~~~~~~~~~-~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~~~~~~~~~~~~~L~~~~i~~~~~~~~ 268 (430)
+|+.|.|.++...... ..-..+++|+.|+++++.-.....+ .....+..+++|+.+.+..+.....
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------------~~~~~~~~l~~L~~L~Ls~N~l~~l 212 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGL-------------MAALCPHKFPAIQNLALRNTGMETP 212 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHH-------------HTTSCTTSSCCCCSCBCCSSCCCCH
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhh-------------hHHHhhhcCCCCCEEECCCCCCCch
Confidence 9999999988542211 1112346777777776641110000 0001123445555555543332211
Q ss_pred hhHHHHhhccCCCceEEEEecceeeecccccC---CC---CccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141 269 MHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR---EF---PKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI 340 (430)
Q Consensus 269 ~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~---~~---~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~ 340 (430)
......++..+++|+.|+++.+. +.... |. .+ ++|++|+++...-.. +..-+ +++|+.|++..
T Consensus 213 ~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~-p~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~--~~~L~~L~Ls~ 281 (310)
T 4glp_A 213 TGVCAALAAAGVQPHSLDLSHNS-LRATV-NPSAPRCMWSSALNSLNLSFAGLEQ-----VPKGL--PAKLRVLDLSS 281 (310)
T ss_dssp HHHHHHHHHHTCCCSSEECTTSC-CCCCC-CSCCSSCCCCTTCCCEECCSSCCCS-----CCSCC--CSCCSCEECCS
T ss_pred HHHHHHHHhcCCCCCEEECCCCC-CCccc-hhhHHhccCcCcCCEEECCCCCCCc-----hhhhh--cCCCCEEECCC
Confidence 11111345666777777776665 32211 11 12 567777764432111 11111 26777777744
No 59
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.83 E-value=1.5e-05 Score=80.66 Aligned_cols=126 Identities=15% Similarity=0.078 Sum_probs=68.1
Q ss_pred CCCCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE-EeCCce
Q 014141 157 GCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-ISAPNL 235 (430)
Q Consensus 157 p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~-i~~P~L 235 (430)
|..+..+++|++|++.++.+.. +...+..+ .|+.|.+.+|... .+.. ..+++|+.|.+.++.....+. ...|+|
T Consensus 275 ~~~~~~l~~L~~L~l~~~~l~~--l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~L 349 (570)
T 2z63_A 275 IDLFNCLTNVSSFSLVSVTIER--VKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNAFSEVDLPSL 349 (570)
T ss_dssp TTTTGGGTTCSEEEEESCEECS--CCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCBCCCCBCTTC
T ss_pred hhhhcCcCcccEEEecCccchh--hhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCccccccccccCCCC
Confidence 3445566777777777776642 33334455 7777777766432 2211 234667777776655222211 345677
Q ss_pred eEEEEecceee------eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141 236 LSFKYIGQDIN------LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 291 (430)
Q Consensus 236 ~~L~~~~~~~~------~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~ 291 (430)
+.|++.+.... ..+.++++|+.+.+..+...... .-+..+++|+.|.+..+.
T Consensus 350 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~l~~L~~L~l~~n~ 407 (570)
T 2z63_A 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS----SNFLGLEQLEHLDFQHSN 407 (570)
T ss_dssp CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE----EEEETCTTCCEEECTTSE
T ss_pred CEEeCcCCccCccccccccccccCccCEEECCCCcccccc----ccccccCCCCEEEccCCc
Confidence 77776655332 12345667777666543322100 114566777777776654
No 60
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.82 E-value=9.4e-06 Score=82.73 Aligned_cols=123 Identities=19% Similarity=0.215 Sum_probs=67.0
Q ss_pred CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE--EeCCcee
Q 014141 159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLL 236 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~--i~~P~L~ 236 (430)
.+..+++|+.|+|.++.+.+-.- +..+++|+.|.|.+|. +..+..-..+++|+.|.+.++. +..+. ...|+|+
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~ 134 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLE 134 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEECTTSC-CCCCGGGGGCTTCS
T ss_pred HHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEecCCC-CCCCccccCCCccC
Confidence 34577888888888887654221 6788888888888874 2332222345778888877765 22221 1235666
Q ss_pred EEEEecceee--eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141 237 SFKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 291 (430)
Q Consensus 237 ~L~~~~~~~~--~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~ 291 (430)
.|.+.++.+. -.+..+++|+.+.+..+...... . +..+++|+.|.|..+.
T Consensus 135 ~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~----~-l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 135 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV----P-LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCG----G-GTTCTTCCEEECCSSC
T ss_pred EEECCCCccCCchhhcccCCCCEEECcCCcCCCch----h-hccCCCCCEEECcCCC
Confidence 6666554331 12334455555555433222111 1 3445555555554443
No 61
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.82 E-value=3.5e-06 Score=70.78 Aligned_cols=126 Identities=20% Similarity=0.176 Sum_probs=64.6
Q ss_pred CCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccE-EE--E-eCCceeEE
Q 014141 163 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKE-IE--I-SAPNLLSF 238 (430)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~-i~--i-~~P~L~~L 238 (430)
.++|++|+|.++.+++..+...+..+++|+.|.+.+|. ++.+..-..+++|+.|.+.++. +.. +. + ..|+|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEE
Confidence 36777777777777644455556677778888877775 3333222345667777777665 221 11 1 24566666
Q ss_pred EEecceee-----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecc
Q 014141 239 KYIGQDIN-----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGC 290 (430)
Q Consensus 239 ~~~~~~~~-----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~ 290 (430)
++.+..+. ..+..+++|+.+.+..+.......+....+..+++|+.|++..+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 66554321 12334455555555433322211111123444555555554443
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.82 E-value=4.1e-06 Score=78.15 Aligned_cols=40 Identities=23% Similarity=0.115 Sum_probs=20.5
Q ss_pred CCCCCCceEEEeeEEEcch--hHHHHhh-cCCcccceeeccCC
Q 014141 161 SGIKSLRSLTLCAVNVTGE--VVEFFIH-NCPLLENLRITQSP 200 (430)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~--~l~~ll~-~cp~Le~L~L~~~~ 200 (430)
..+++|++|+|.+..+++. .+..+.. ..++|+.|.|.++.
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~ 160 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC
Confidence 4556666666666655432 2222211 13666666666553
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.80 E-value=6.9e-06 Score=76.19 Aligned_cols=216 Identities=14% Similarity=0.081 Sum_probs=133.1
Q ss_pred CCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee----EecCCCCcceEEEeecCCccEEE---EeCCce
Q 014141 163 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK----VVGSSIPLKCLDIQFCYSIKEIE---ISAPNL 235 (430)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~----i~~~~~~L~~L~l~~c~~l~~i~---i~~P~L 235 (430)
.++|++|+|.+..++.- -...+..+++|+.|.|.++.. +.+. ....+++|+.|.+.++. +..+. ...++|
T Consensus 27 ~~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L 103 (306)
T 2z66_A 27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGL-SFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQL 103 (306)
T ss_dssp CTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCC-CEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTC
T ss_pred CCCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCcc-CcccCcccccccccccCEEECCCCc-cccChhhcCCCCCC
Confidence 37899999999877631 123467899999999998853 2221 11246899999999886 44432 256899
Q ss_pred eEEEEecceeee-----ecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCC---CCccce
Q 014141 236 LSFKYIGQDINL-----HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLMN 307 (430)
Q Consensus 236 ~~L~~~~~~~~~-----~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~---~~~L~~ 307 (430)
++|.+.+..... .+..+++|+.+.+..+..... ....+..+++|+.|.+..+. +.....+.. +++|++
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA---FNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTF 179 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC---STTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCE
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc---chhhcccCcCCCEEECCCCc-cccccchhHHhhCcCCCE
Confidence 999998775431 355778899988875433211 11446778999999998876 443233433 678888
Q ss_pred EEEEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCccccccCcCCCccEEEEeeeecChhhHHHHHHHHhcc
Q 014141 308 LNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENA 387 (430)
Q Consensus 308 L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a 387 (430)
|+++...-.. . ....+..+|+|++|++....- ..... ..-..+++|+.+.+.+-.-..... ..+.+.
T Consensus 180 L~Ls~n~l~~--~--~~~~~~~l~~L~~L~L~~N~l----~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~~ 246 (306)
T 2z66_A 180 LDLSQCQLEQ--L--SPTAFNSLSSLQVLNMSHNNF----FSLDT-FPYKCLNSLQVLDYSLNHIMTSKK----QELQHF 246 (306)
T ss_dssp EECTTSCCCE--E--CTTTTTTCTTCCEEECTTSCC----SBCCS-GGGTTCTTCCEEECTTSCCCBCSS----SSCCCC
T ss_pred EECCCCCcCC--c--CHHHhcCCCCCCEEECCCCcc----CccCh-hhccCcccCCEeECCCCCCcccCH----HHHHhh
Confidence 8885432111 1 124567889999999854321 11000 011245789999887633111000 012233
Q ss_pred -cccccEEEecC
Q 014141 388 -TMLEKMIIKPS 398 (430)
Q Consensus 388 -~~Le~m~i~~~ 398 (430)
+.|+.+.+...
T Consensus 247 ~~~L~~L~L~~N 258 (306)
T 2z66_A 247 PSSLAFLNLTQN 258 (306)
T ss_dssp CTTCCEEECTTC
T ss_pred hccCCEEEccCC
Confidence 47888888654
No 64
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.80 E-value=4.7e-06 Score=79.47 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=18.5
Q ss_pred CCceEEEeeEEEcch---hHHHHhhcC-CcccceeeccCC
Q 014141 165 SLRSLTLCAVNVTGE---VVEFFIHNC-PLLENLRITQSP 200 (430)
Q Consensus 165 ~L~~L~L~~~~~~~~---~l~~ll~~c-p~Le~L~L~~~~ 200 (430)
+|++|+|+++.+++. .+..++..+ +.|++|.|.+|.
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 566666665555442 233333333 566666665553
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.80 E-value=1.8e-06 Score=80.63 Aligned_cols=192 Identities=20% Similarity=0.144 Sum_probs=117.7
Q ss_pred CCCCCceEEEeeEEEcchhHHHH-hhcCCcccceeeccCCCCceeeEecC-----CCCcceEEEeecCCccEEE----Ee
Q 014141 162 GIKSLRSLTLCAVNVTGEVVEFF-IHNCPLLENLRITQSPDLLSLKVVGS-----SIPLKCLDIQFCYSIKEIE----IS 231 (430)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~l~~l-l~~cp~Le~L~L~~~~~~~~~~i~~~-----~~~L~~L~l~~c~~l~~i~----i~ 231 (430)
++++|++|+|.+..+++..-..+ +..+++|+.|.|.++........-.. .++|+.|.+.++. +..+. -.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhcc
Confidence 57999999999998875332222 37899999999998753221100011 2789999999876 33322 14
Q ss_pred CCceeEEEEeccee--------eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeeccc-ccC--
Q 014141 232 APNLLSFKYIGQDI--------NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF-SQR-- 300 (430)
Q Consensus 232 ~P~L~~L~~~~~~~--------~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~-l~~-- 300 (430)
.++|+.|++.+... .+.+..+++|+.+.+..+...........++..+++|+.|+++.+. +.... .+.
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 250 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCD 250 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhh
Confidence 68999999987742 1223788999999988654432112222566788999999998876 44322 111
Q ss_pred CCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCccccccCcCCCccEEEEee
Q 014141 301 EFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQG 369 (430)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~ 369 (430)
.+++|++|+++...-. .+..-+. ++|+.|++....- ... +.-..+++|+.+.+.+
T Consensus 251 ~l~~L~~L~Ls~N~l~-----~ip~~~~--~~L~~L~Ls~N~l----~~~---p~~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLK-----QVPKGLP--AKLSVLDLSYNRL----DRN---PSPDELPQVGNLSLKG 305 (312)
T ss_dssp CCTTCCEEECTTSCCS-----SCCSSCC--SEEEEEECCSSCC----CSC---CCTTTSCEEEEEECTT
T ss_pred hcCCCCEEECCCCccC-----hhhhhcc--CCceEEECCCCCC----CCC---hhHhhCCCCCEEeccC
Confidence 2578888888543221 1111111 7899998855321 111 1222446677666654
No 66
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.80 E-value=6.1e-06 Score=84.13 Aligned_cols=164 Identities=19% Similarity=0.185 Sum_probs=114.3
Q ss_pred CCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE-E-eCCceeEE
Q 014141 161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-I-SAPNLLSF 238 (430)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~-i-~~P~L~~L 238 (430)
..+++|+.|.|.++.+..- . -+..+++|+.|.|.+|.. ..+.....+++|+.|.+.++. +..+. + ..++|+.|
T Consensus 40 ~~L~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~Ls~N~l-~~~~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L 114 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGNKL-TDIKPLTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSL 114 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC--T-TGGGCTTCCEEECTTSCC-CCCGGGGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEE
T ss_pred hcCCCCCEEECcCCCCCCC--h-HHccCCCCCEEEeeCCCC-CCChhhccCCCCCEEECcCCC-CCCChhhccCCCCCEE
Confidence 3678999999998877542 2 267899999999999853 222223456899999999886 33322 1 35789999
Q ss_pred EEecceee--eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeecC
Q 014141 239 KYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAAN 316 (430)
Q Consensus 239 ~~~~~~~~--~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 316 (430)
.+.+..+. -.+..+++|+.+.+..+..... ..+..+++|+.|.|..+. +........+++|++|+|+.+.-.
T Consensus 115 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-----~~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 115 SLEHNGISDINGLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp ECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-----GGGGSCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCC
T ss_pred EecCCCCCCCccccCCCccCEEECCCCccCCc-----hhhcccCCCCEEECcCCc-CCCchhhccCCCCCEEECcCCCCC
Confidence 99877542 2356788999999986554321 456789999999998876 443222334889999998654222
Q ss_pred ccchhhHHHHHhhCCCceEEEEEEe
Q 014141 317 QETLLGLSFIMKACPFLEKLVLQIW 341 (430)
Q Consensus 317 ~~~~~~l~~lL~~~p~L~~L~l~~~ 341 (430)
.+ .-+..+++|+.|+|...
T Consensus 189 -----~l-~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 189 -----DL-RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp -----BC-GGGTTCTTCSEEECCSE
T ss_pred -----CC-hHHccCCCCCEEEccCC
Confidence 12 23678999999998654
No 67
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.79 E-value=2.3e-05 Score=79.90 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=25.5
Q ss_pred CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCC
Q 014141 160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP 200 (430)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~ 200 (430)
+.++++|++|+|.++.+.+- ....+.++++|+.|.|.++.
T Consensus 143 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 143 FHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp TTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECTTSC
T ss_pred hccCCCCCEEEeeCCcCCCC-ChhhhhcCCcCcEEECcCCC
Confidence 46777788888777765431 11234567777777777663
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.78 E-value=8e-06 Score=74.50 Aligned_cols=61 Identities=20% Similarity=0.103 Sum_probs=35.4
Q ss_pred CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecC
Q 014141 159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY 223 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~ 223 (430)
.+..+++|+.|+|.+..+.+- . -+..+++|+.|.+.++.. +.+.. -..+++|+.|.+.++.
T Consensus 58 ~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~ 120 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQ 120 (272)
T ss_dssp TGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSC
T ss_pred ccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCcc-CccChhHhcCCcCCCEEECCCCc
Confidence 345677777777777766542 1 355677777777777632 22111 1234566666666554
No 69
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.77 E-value=7.5e-06 Score=76.40 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=19.2
Q ss_pred CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccC
Q 014141 159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQS 199 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~ 199 (430)
.+.++++|++|+|.+..+.+. +...+..+++|+.|.|.++
T Consensus 96 ~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N 135 (313)
T 1ogq_A 96 AIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYN 135 (313)
T ss_dssp GGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSS
T ss_pred hHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCC
Confidence 334555555555555544321 1112344555555555554
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.76 E-value=4e-05 Score=78.29 Aligned_cols=193 Identities=15% Similarity=0.042 Sum_probs=107.4
Q ss_pred CCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEEeCCceeEEEEe
Q 014141 162 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYI 241 (430)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~ 241 (430)
.+++|++|+|+++.++. +. ...++|+.|.|.++. ++.+ ....++|+.|.+.++. +..+....|+|++|.+.
T Consensus 79 ~l~~L~~L~Ls~N~l~~--lp---~~l~~L~~L~Ls~N~-l~~l--~~~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls 149 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTS--LP---VLPPGLLELSIFSNP-LTHL--PALPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVS 149 (622)
T ss_dssp CCTTCCEEEECSCCCSC--CC---CCCTTCCEEEECSCC-CCCC--CCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECC
T ss_pred cCCCCCEEEcCCCcCCc--CC---CCCCCCCEEECcCCc-CCCC--CCCCCCcCEEECCCCC-CCcCCCCCCCCCEEECc
Confidence 45777777777766542 11 156777777777663 2222 1133667777776664 44443344777777777
Q ss_pred cceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeecCccchh
Q 014141 242 GQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLL 321 (430)
Q Consensus 242 ~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 321 (430)
++.+...-...++|+.+.+..+... .+...+++|+.|++..+. +. .++..+++|+.|.+..+.-. .
T Consensus 150 ~N~l~~l~~~~~~L~~L~L~~N~l~-------~l~~~~~~L~~L~Ls~N~-l~--~l~~~~~~L~~L~L~~N~l~--~-- 215 (622)
T 3g06_A 150 DNQLASLPALPSELCKLWAYNNQLT-------SLPMLPSGLQELSVSDNQ-LA--SLPTLPSELYKLWAYNNRLT--S-- 215 (622)
T ss_dssp SSCCSCCCCCCTTCCEEECCSSCCS-------CCCCCCTTCCEEECCSSC-CS--CCCCCCTTCCEEECCSSCCS--S--
T ss_pred CCcCCCcCCccCCCCEEECCCCCCC-------CCcccCCCCcEEECCCCC-CC--CCCCccchhhEEECcCCccc--c--
Confidence 6644322223456777766643322 233556788888887766 32 34445678888877543221 1
Q ss_pred hHHHHHhhCCCceEEEEEEeccccccccCccccccCcCCCccEEEEeeeecChhhHHHHHHHHhcccccccEEEecC
Q 014141 322 GLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPS 398 (430)
Q Consensus 322 ~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~~~ 398 (430)
+. ...++|+.|++....- .. . +..+++|+.+.+.+-.-.. +. ...+.|+.+.+...
T Consensus 216 -l~---~~~~~L~~L~Ls~N~L----~~---l--p~~l~~L~~L~Ls~N~L~~--lp------~~~~~L~~L~Ls~N 271 (622)
T 3g06_A 216 -LP---ALPSGLKELIVSGNRL----TS---L--PVLPSELKELMVSGNRLTS--LP------MLPSGLLSLSVYRN 271 (622)
T ss_dssp -CC---CCCTTCCEEECCSSCC----SC---C--CCCCTTCCEEECCSSCCSC--CC------CCCTTCCEEECCSS
T ss_pred -cC---CCCCCCCEEEccCCcc----Cc---C--CCCCCcCcEEECCCCCCCc--CC------cccccCcEEeCCCC
Confidence 11 2347888888854311 10 1 1334678888777632111 00 04577888777654
No 71
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.76 E-value=1e-05 Score=82.66 Aligned_cols=172 Identities=19% Similarity=0.145 Sum_probs=107.2
Q ss_pred CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCcee-eEecCCCCcceEEEeecCCccEEE----EeCC
Q 014141 159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIE----ISAP 233 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~-~i~~~~~~L~~L~l~~c~~l~~i~----i~~P 233 (430)
.+.++++|+.|+|.+..++. +..-+..+++|+.|.+.++...... ..-..+++|+.|.+.++.....+. -..+
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HhccccCCCEEeccCCccCC--CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 46788999999999887652 3333678999999999988533211 112356899999998876322222 1358
Q ss_pred ceeEEEEecceee------eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeeccccc---CCCCc
Q 014141 234 NLLSFKYIGQDIN------LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQ---REFPK 304 (430)
Q Consensus 234 ~L~~L~~~~~~~~------~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~---~~~~~ 304 (430)
+|++|++.+.... ..+..+++|+.+.+..+..... ....+..+++|+.|++..+. +.....+ ..+++
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL---KTEAFKECPQLELLDLAFTR-LKVKDAQSPFQNLHL 426 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE---CTTTTTTCTTCSEEECTTCC-EECCTTCCTTTTCTT
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC---CHHHhcCCccCCeEECCCCc-CCCcccchhhhCccc
Confidence 8999998876442 2356788999999875543211 11345678999999998776 3322211 12566
Q ss_pred cceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141 305 LMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI 340 (430)
Q Consensus 305 L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~ 340 (430)
|++|+++...-.. .....+..+|+|++|++..
T Consensus 427 L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~ 458 (606)
T 3t6q_A 427 LKVLNLSHSLLDI----SSEQLFDGLPALQHLNLQG 458 (606)
T ss_dssp CCEEECTTCCCBT----TCTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCccCC----cCHHHHhCCCCCCEEECCC
Confidence 6666664321110 1123345566666666643
No 72
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.76 E-value=5.1e-06 Score=81.63 Aligned_cols=84 Identities=19% Similarity=0.078 Sum_probs=48.9
Q ss_pred CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCce-ee--EecCCCCcceEEEeecCCccEEE-----E
Q 014141 159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLS-LK--VVGSSIPLKCLDIQFCYSIKEIE-----I 230 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~-~~--i~~~~~~L~~L~l~~c~~l~~i~-----i 230 (430)
.+.++++|++|+|.+..+.+. ....+.++++|+.|.|.+|..... +. .-..+++|+.|.+.++. +..+. -
T Consensus 74 ~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 151 (455)
T 3v47_A 74 TFRGLSSLIILKLDYNQFLQL-ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFL 151 (455)
T ss_dssp TTTTCTTCCEEECTTCTTCEE-CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGG
T ss_pred cccccccCCEEeCCCCccCcc-ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccC
Confidence 456777788888777654321 122355677888888877753221 11 12245778888887765 22221 1
Q ss_pred eCCceeEEEEecce
Q 014141 231 SAPNLLSFKYIGQD 244 (430)
Q Consensus 231 ~~P~L~~L~~~~~~ 244 (430)
..++|++|++.+..
T Consensus 152 ~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 152 NMRRFHVLDLTFNK 165 (455)
T ss_dssp GCTTCCEEECTTCC
T ss_pred CCCcccEEeCCCCc
Confidence 35778888776653
No 73
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.74 E-value=6.9e-06 Score=78.29 Aligned_cols=201 Identities=14% Similarity=0.140 Sum_probs=125.1
Q ss_pred CCCceEEEeeEEEcchh---HHHHhhcCC-cccceeeccCCCCceeeE---e----cCCCCcceEEEeecCCccEEE---
Q 014141 164 KSLRSLTLCAVNVTGEV---VEFFIHNCP-LLENLRITQSPDLLSLKV---V----GSSIPLKCLDIQFCYSIKEIE--- 229 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~---l~~ll~~cp-~Le~L~L~~~~~~~~~~i---~----~~~~~L~~L~l~~c~~l~~i~--- 229 (430)
++|++|+|+++.+++.. +...+..+| .|++|.|.+|. ++.... . ..+++|+.|.+.++. +....
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~ 99 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDE 99 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHH
Confidence 55999999999887643 446677888 99999999984 322111 1 113789999999887 33221
Q ss_pred ----E-eC-CceeEEEEecceeee--------ecCC-CCCceEEEEEeecCcc-hhhHHHHhhccCC-CceEEEEeccee
Q 014141 230 ----I-SA-PNLLSFKYIGQDINL--------HVGS-LPQLVDVVFHVTPMVQ-KMHCIGSIVSYLP-QLKTLELDGCNE 292 (430)
Q Consensus 230 ----i-~~-P~L~~L~~~~~~~~~--------~~~~-~~~L~~~~i~~~~~~~-~~~~~~~l~~~~~-~l~~L~l~~~~~ 292 (430)
+ .. ++|++|++.+..+.. .+.. ..+|+.+.+..+.... ....+...+..++ +|+.|.+..+.
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~- 178 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN- 178 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-
Confidence 1 11 799999998774421 1223 3589999888654332 1223334455555 99999998876
Q ss_pred eecccc------cCCC-CccceEEEEEeecCccchhhHHHHHhh-CCCceEEEEEEeccccccccCccc--cc-cCcCCC
Q 014141 293 VFAQFS------QREF-PKLMNLNISFTAANQETLLGLSFIMKA-CPFLEKLVLQIWNNGRRIGKKRHQ--IS-KHSHQH 361 (430)
Q Consensus 293 ~~~~~l------~~~~-~~L~~L~l~~~~~~~~~~~~l~~lL~~-~p~L~~L~l~~~~~~~~~~~~~~~--~~-~~~~~~ 361 (430)
+..... ...+ ++|++|+|+...-.......+...+.. +++|++|++.... ..+.+.. .. -..+++
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~----l~~~~~~~l~~~~~~l~~ 254 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC----LHGPSLENLKLLKDSLKH 254 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC----CCCCCHHHHHHTTTTTTT
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC----CCcHHHHHHHHHHhcCCC
Confidence 432211 1124 589999996654333334446777776 5699999996532 1221110 11 234577
Q ss_pred ccEEEEeeee
Q 014141 362 LKLVELQGFN 371 (430)
Q Consensus 362 L~~v~i~~~~ 371 (430)
|+.+.+.+..
T Consensus 255 L~~L~L~~n~ 264 (362)
T 3goz_A 255 LQTVYLDYDI 264 (362)
T ss_dssp CSEEEEEHHH
T ss_pred ccEEEeccCC
Confidence 9999998754
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.73 E-value=9.1e-05 Score=65.91 Aligned_cols=187 Identities=13% Similarity=0.029 Sum_probs=104.3
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEE----EeCCceeE
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIE----ISAPNLLS 237 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~----i~~P~L~~ 237 (430)
++|++|+|.+..++.-. ...+.++++|+.|.+.++..++.+.. -..+++|+.|.+.+|..+..+. -..|+|++
T Consensus 31 ~~l~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEEC-HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 47888888887665311 12356788888888888864444331 1345788888888755566554 14578888
Q ss_pred EEEecceeee--ecCCCCCce---EEEEEee-cCcchhhHHHHhhccCCCce-EEEEecceeeecccccCC---CCccce
Q 014141 238 FKYIGQDINL--HVGSLPQLV---DVVFHVT-PMVQKMHCIGSIVSYLPQLK-TLELDGCNEVFAQFSQRE---FPKLMN 307 (430)
Q Consensus 238 L~~~~~~~~~--~~~~~~~L~---~~~i~~~-~~~~~~~~~~~l~~~~~~l~-~L~l~~~~~~~~~~l~~~---~~~L~~ 307 (430)
|.+.+..... .+...++|+ .+.+..+ .... .. ...+..+++|+ .|++..+. +. .++.. .++|++
T Consensus 110 L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~-i~--~~~~~~l~~L~~~L~l~~n~-l~--~i~~~~~~~~~L~~ 183 (239)
T 2xwt_C 110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS-IP--VNAFQGLCNETLTLKLYNNG-FT--SVQGYAFNGTKLDA 183 (239)
T ss_dssp EEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCE-EC--TTTTTTTBSSEEEEECCSCC-CC--EECTTTTTTCEEEE
T ss_pred EeCCCCCCccccccccccccccccEEECCCCcchhh-cC--cccccchhcceeEEEcCCCC-Cc--ccCHhhcCCCCCCE
Confidence 8887764321 144555665 6666644 2211 00 03356778888 88887665 32 22222 245666
Q ss_pred EEEEEeecCccchhhH-HHHHhhC-CCceEEEEEEeccccccccCccccccCcCCCccEEEEee
Q 014141 308 LNISFTAANQETLLGL-SFIMKAC-PFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQG 369 (430)
Q Consensus 308 L~l~~~~~~~~~~~~l-~~lL~~~-p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~ 369 (430)
|++.... ....+ ...+..+ ++|+.|++....- . ..+ ...+.+|+.+.+.+
T Consensus 184 L~L~~n~----~l~~i~~~~~~~l~~~L~~L~l~~N~l----~---~l~-~~~~~~L~~L~l~~ 235 (239)
T 2xwt_C 184 VYLNKNK----YLTVIDKDAFGGVYSGPSLLDVSQTSV----T---ALP-SKGLEHLKELIARN 235 (239)
T ss_dssp EECTTCT----TCCEECTTTTTTCSBCCSEEECTTCCC----C---CCC-CTTCTTCSEEECTT
T ss_pred EEcCCCC----CcccCCHHHhhccccCCcEEECCCCcc----c---cCC-hhHhccCceeeccC
Confidence 6663320 01111 2345566 8888888843210 1 111 12456777776654
No 75
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.72 E-value=1.8e-06 Score=91.43 Aligned_cols=37 Identities=8% Similarity=-0.040 Sum_probs=19.8
Q ss_pred CCCCCceEEEeeEEEcchhHHH--HhhcCCcccceeeccCC
Q 014141 162 GIKSLRSLTLCAVNVTGEVVEF--FIHNCPLLENLRITQSP 200 (430)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~l~~--ll~~cp~Le~L~L~~~~ 200 (430)
.+++|+.|+|.+..+. .+.. .+..+++|+.|.|.++.
T Consensus 546 ~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 546 TGPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp TTTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSC
T ss_pred ccCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCC
Confidence 3446666666665554 2322 44555666666665553
No 76
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.72 E-value=6e-06 Score=77.05 Aligned_cols=195 Identities=15% Similarity=0.110 Sum_probs=102.9
Q ss_pred CCCCCCCCCCceEEEee-EEEcchhHHHHhhcCCcccceeeccCCCCceee-EecCCCCcceEEEeecCCcc-EEE---E
Q 014141 157 GCGLSGIKSLRSLTLCA-VNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFCYSIK-EIE---I 230 (430)
Q Consensus 157 p~~~~~~~~L~~L~L~~-~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~-i~~~~~~L~~L~l~~c~~l~-~i~---i 230 (430)
|..+.++++|++|+|.+ ..+.+. +..-+..+++|+.|.|.++.....+. .-..+++|+.|.+.++. +. .+. -
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~ 146 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-LSGTLPPSIS 146 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE-EESCCCGGGG
T ss_pred ChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc-cCCcCChHHh
Confidence 33456778888888885 333321 22235678888888888775322211 11245778888887664 11 111 1
Q ss_pred eCCceeEEEEecceee----eecCCCC-CceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecc--cccCCCC
Q 014141 231 SAPNLLSFKYIGQDIN----LHVGSLP-QLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ--FSQREFP 303 (430)
Q Consensus 231 ~~P~L~~L~~~~~~~~----~~~~~~~-~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~--~l~~~~~ 303 (430)
..|+|++|.+.+..+. ..+..++ .|+.+.+..+....... ..+..++ |+.|++..+. +... .....++
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~---~~~~~l~-L~~L~Ls~N~-l~~~~~~~~~~l~ 221 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP---PTFANLN-LAFVDLSRNM-LEGDASVLFGSDK 221 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC---GGGGGCC-CSEEECCSSE-EEECCGGGCCTTS
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC---hHHhCCc-ccEEECcCCc-ccCcCCHHHhcCC
Confidence 3477888887766442 2344555 77777776443321111 2233444 7888877665 3221 1112266
Q ss_pred ccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCccccc-cCcCCCccEEEEee
Q 014141 304 KLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KHSHQHLKLVELQG 369 (430)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~v~i~~ 369 (430)
+|+.|+++...-.. . ...+..+++|++|++....- .+..+. -..+++|+.+.+.+
T Consensus 222 ~L~~L~L~~N~l~~-~----~~~~~~l~~L~~L~Ls~N~l------~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 222 NTQKIHLAKNSLAF-D----LGKVGLSKNLNGLDLRNNRI------YGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp CCSEEECCSSEECC-B----GGGCCCCTTCCEEECCSSCC------EECCCGGGGGCTTCCEEECCS
T ss_pred CCCEEECCCCceee-e----cCcccccCCCCEEECcCCcc------cCcCChHHhcCcCCCEEECcC
Confidence 77777764432110 1 11145667888887744211 111111 12346677777765
No 77
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.71 E-value=5.3e-05 Score=75.75 Aligned_cols=215 Identities=14% Similarity=0.155 Sum_probs=112.5
Q ss_pred CCCCCCCceEEEeeEEEcchhHHHHhh--cCCcccceeeccCCCCceeeEe------cCCCC------------------
Q 014141 160 LSGIKSLRSLTLCAVNVTGEVVEFFIH--NCPLLENLRITQSPDLLSLKVV------GSSIP------------------ 213 (430)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~--~cp~Le~L~L~~~~~~~~~~i~------~~~~~------------------ 213 (430)
+..+++|+.|.|.++.+.+..+..+.. .++.|+.|.+.+|...+.+... ..+++
T Consensus 216 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~ 295 (520)
T 2z7x_B 216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295 (520)
T ss_dssp GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHH
T ss_pred hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhh
Confidence 456788888888888888766555543 3678999998877421111000 12233
Q ss_pred --------cceEEEeecCCccEEE--EeCCceeEEEEecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccC
Q 014141 214 --------LKCLDIQFCYSIKEIE--ISAPNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYL 279 (430)
Q Consensus 214 --------L~~L~l~~c~~l~~i~--i~~P~L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~ 279 (430)
|+.|.+.++. +..+. -..++|++|++.+.... ..+..+++|+.+.+..+.... ...+...+..+
T Consensus 296 ~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~l 373 (520)
T 2z7x_B 296 YEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE-LSKIAEMTTQM 373 (520)
T ss_dssp HHHHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB-HHHHHHHHTTC
T ss_pred hcccccCceeEEEcCCCc-cccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCc-cccchHHHhhC
Confidence 4444444433 11111 24567777777765432 234567778877777544331 12233445677
Q ss_pred CCceEEEEecceeeeccccc----CCCCccceEEEEEeecCccchhhHHHHHhhC-CCceEEEEEEeccccccccCcccc
Q 014141 280 PQLKTLELDGCNEVFAQFSQ----REFPKLMNLNISFTAANQETLLGLSFIMKAC-PFLEKLVLQIWNNGRRIGKKRHQI 354 (430)
Q Consensus 280 ~~l~~L~l~~~~~~~~~~l~----~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~-p~L~~L~l~~~~~~~~~~~~~~~~ 354 (430)
++|+.|+++.+. +... +| ..+++|++|+++...-.. .+.... ++|+.|++....- . ..+
T Consensus 374 ~~L~~L~Ls~N~-l~~~-l~~~~~~~l~~L~~L~Ls~N~l~~-------~~~~~l~~~L~~L~Ls~N~l----~---~ip 437 (520)
T 2z7x_B 374 KSLQQLDISQNS-VSYD-EKKGDCSWTKSLLSLNMSSNILTD-------TIFRCLPPRIKVLDLHSNKI----K---SIP 437 (520)
T ss_dssp TTCCEEECCSSC-CBCC-GGGCSCCCCTTCCEEECCSSCCCG-------GGGGSCCTTCCEEECCSSCC----C---CCC
T ss_pred CCCCEEECCCCc-CCcc-cccchhccCccCCEEECcCCCCCc-------chhhhhcccCCEEECCCCcc----c---ccc
Confidence 888888887766 3221 22 125677777764432111 011122 5777777744311 1 111
Q ss_pred c-cCcCCCccEEEEeeee--cChhhHHHHHHHHhcccccccEEEecC
Q 014141 355 S-KHSHQHLKLVELQGFN--GREIDFELAFYVFENATMLEKMIIKPS 398 (430)
Q Consensus 355 ~-~~~~~~L~~v~i~~~~--g~~~e~~l~~~ll~~a~~Le~m~i~~~ 398 (430)
. ...+++|+.+.+.+-. +...+ .+.+.+.|+.+.+...
T Consensus 438 ~~~~~l~~L~~L~L~~N~l~~l~~~------~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 438 KQVVKLEALQELNVASNQLKSVPDG------IFDRLTSLQKIWLHTN 478 (520)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCCTT------TTTTCTTCCEEECCSS
T ss_pred hhhhcCCCCCEEECCCCcCCccCHH------HhccCCcccEEECcCC
Confidence 1 2245666666666532 11111 2345666776666543
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.70 E-value=1.4e-05 Score=73.72 Aligned_cols=58 Identities=21% Similarity=0.130 Sum_probs=37.4
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecC
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCY 223 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~ 223 (430)
++|+.|+|.+..++.-. ...+..++.|+.|.|.++. ++.+.....+++|+.|.+.++.
T Consensus 31 ~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~ 88 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ 88 (290)
T ss_dssp TTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSC
T ss_pred CCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEECCCCc
Confidence 67888888877664321 1235678888888888774 3433333455677777776654
No 79
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.68 E-value=5.6e-05 Score=65.22 Aligned_cols=62 Identities=23% Similarity=0.255 Sum_probs=40.7
Q ss_pred CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCc-eeeEecCCCCcceEEEeecC
Q 014141 159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLL-SLKVVGSSIPLKCLDIQFCY 223 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~-~~~i~~~~~~L~~L~l~~c~ 223 (430)
.+..+++|++|++.++.+.+- . .+..+|+|+.|.+.++..-. ....-..+++|+.|.+.++.
T Consensus 61 ~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 123 (197)
T 4ezg_A 61 GIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123 (197)
T ss_dssp TGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB
T ss_pred HHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc
Confidence 346889999999999966442 2 46789999999999985322 12122234555555555543
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.68 E-value=1.9e-05 Score=71.79 Aligned_cols=58 Identities=14% Similarity=0.007 Sum_probs=31.5
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecC
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCY 223 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~ 223 (430)
++|++|+|.+..++.-. ...+..+++|+.|.|.++.. +.+... ..+++|+.|.+.++.
T Consensus 37 ~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEECCCCc
Confidence 56777777777654311 11345677777777776632 221111 224566666665543
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.67 E-value=7.8e-06 Score=76.11 Aligned_cols=217 Identities=12% Similarity=0.124 Sum_probs=131.1
Q ss_pred CCCCceEEEeeEEEcchhHHHHhh--cCCcccceeeccCCCCceeeEe---cCCCCcceEEEeecCCcc------EEE-E
Q 014141 163 IKSLRSLTLCAVNVTGEVVEFFIH--NCPLLENLRITQSPDLLSLKVV---GSSIPLKCLDIQFCYSIK------EIE-I 230 (430)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~--~cp~Le~L~L~~~~~~~~~~i~---~~~~~L~~L~l~~c~~l~------~i~-i 230 (430)
...++.|.+.++.+++..+..+.. .++.|++|.+.++......... ..+++|+.|.+.++.--. ... .
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 355788999998888766655543 4678999999998643222111 456889999999876211 011 1
Q ss_pred eCCceeEEEEecceee----eecCCCCCceEEEEEeecCcchhhHHH-HhhccCCCceEEEEecceeeecc-c----ccC
Q 014141 231 SAPNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYLPQLKTLELDGCNEVFAQ-F----SQR 300 (430)
Q Consensus 231 ~~P~L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~-~l~~~~~~l~~L~l~~~~~~~~~-~----l~~ 300 (430)
..|+|++|++.+..+. -.+..+++|+.+.+..+.......... ..+..+++|+.|.+..+. +... . +..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHh
Confidence 4789999999887542 244578899999988654332111111 234688999999998887 4321 1 112
Q ss_pred CCCccceEEEEEeecCccchhhHHHHHhhC---CCceEEEEEEeccccccccCccccccCcCCCccEEEEeeeecChhhH
Q 014141 301 EFPKLMNLNISFTAANQETLLGLSFIMKAC---PFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDF 377 (430)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~---p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~ 377 (430)
.+++|++|+|+...-.... ..-+..+ |+|++|.+....- . ..+. ...++|+.+.+.+-.-..-.
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~----p~~~~~~~~~~~L~~L~Ls~N~l----~---~lp~-~~~~~L~~L~Ls~N~l~~~~- 288 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATV----NPSAPRCMWSSALNSLNLSFAGL----E---QVPK-GLPAKLRVLDLSSNRLNRAP- 288 (310)
T ss_dssp HTCCCSSEECTTSCCCCCC----CSCCSSCCCCTTCCCEECCSSCC----C---SCCS-CCCSCCSCEECCSCCCCSCC-
T ss_pred cCCCCCEEECCCCCCCccc----hhhHHhccCcCcCCEEECCCCCC----C---chhh-hhcCCCCEEECCCCcCCCCc-
Confidence 3689999998554322110 1112233 7999999955321 1 1111 12368888888763211100
Q ss_pred HHHHHHHhcccccccEEEecC
Q 014141 378 ELAFYVFENATMLEKMIIKPS 398 (430)
Q Consensus 378 ~l~~~ll~~a~~Le~m~i~~~ 398 (430)
.....+.|+.+.+...
T Consensus 289 -----~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 289 -----QPDELPEVDNLTLDGN 304 (310)
T ss_dssp -----CTTSCCCCSCEECSST
T ss_pred -----hhhhCCCccEEECcCC
Confidence 1246688888877543
No 82
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.67 E-value=1.4e-05 Score=81.63 Aligned_cols=56 Identities=16% Similarity=0.039 Sum_probs=26.3
Q ss_pred ccCCCceEEEEecceeeecccccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141 277 SYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI 340 (430)
Q Consensus 277 ~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~ 340 (430)
..+++|+.|.++.+. +. .+|..+++|+.|+|+.+. +..+..-+..+|+|+.|++..
T Consensus 238 ~~l~~L~~L~Ls~N~-L~--~lp~~~~~L~~L~Ls~N~-----L~~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 238 VLPSELKELMVSGNR-LT--SLPMLPSGLLSLSVYRNQ-----LTRLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp CCCTTCCEEECCSSC-CS--CCCCCCTTCCEEECCSSC-----CCSCCGGGGGSCTTCEEECCS
T ss_pred CCCCcCcEEECCCCC-CC--cCCcccccCcEEeCCCCC-----CCcCCHHHhhccccCEEEecC
Confidence 344555555555544 22 223345556665553321 112223355566666666644
No 83
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.66 E-value=3e-05 Score=76.29 Aligned_cols=135 Identities=19% Similarity=0.183 Sum_probs=58.9
Q ss_pred CCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEE-eCCceeEEE
Q 014141 161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI-SAPNLLSFK 239 (430)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i-~~P~L~~L~ 239 (430)
..+++|++|+|.+..+++- . ++.++.|+.|.+.++..++.+.+ ..+++|+.|.+.++. +..+.+ ..++|+.|.
T Consensus 124 ~~l~~L~~L~l~~N~l~~l--~--l~~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L~ 197 (457)
T 3bz5_A 124 SQNPLLTYLNCARNTLTEI--D--VSHNTQLTELDCHLNKKITKLDV-TPQTQLTTLDCSFNK-ITELDVSQNKLLNRLN 197 (457)
T ss_dssp TTCTTCCEEECTTSCCSCC--C--CTTCTTCCEEECTTCSCCCCCCC-TTCTTCCEEECCSSC-CCCCCCTTCTTCCEEE
T ss_pred CCCCcCCEEECCCCcccee--c--cccCCcCCEEECCCCCccccccc-ccCCcCCEEECCCCc-cceeccccCCCCCEEE
Confidence 3444444444444433321 1 33444455555544433333221 123455555555443 222222 235555555
Q ss_pred Eeccee-eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEE
Q 014141 240 YIGQDI-NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLN 309 (430)
Q Consensus 240 ~~~~~~-~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~ 309 (430)
+.+..+ .+.+..+++|+.+.+..+.... + . +..+++|+.|.+..+. +.... +..+++|+.|.
T Consensus 198 l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-i----p-~~~l~~L~~L~l~~N~-l~~~~-~~~l~~L~~L~ 260 (457)
T 3bz5_A 198 CDTNNITKLDLNQNIQLTFLDCSSNKLTE-I----D-VTPLTQLTYFDCSVNP-LTELD-VSTLSKLTTLH 260 (457)
T ss_dssp CCSSCCSCCCCTTCTTCSEEECCSSCCSC-C----C-CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCEEE
T ss_pred CcCCcCCeeccccCCCCCEEECcCCcccc-c----C-ccccCCCCEEEeeCCc-CCCcC-HHHCCCCCEEe
Confidence 554433 1234455556665555433221 1 1 3455666666665554 22211 22255555554
No 84
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.65 E-value=5e-05 Score=71.16 Aligned_cols=99 Identities=12% Similarity=0.083 Sum_probs=50.0
Q ss_pred CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE----EeCCc
Q 014141 159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE----ISAPN 234 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~----i~~P~ 234 (430)
.+.++++|++|+|.+..+++- ....+..+++|+.|.+.++.- +.+... ..++|+.|.+.++. +..+. -..++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l-~~l~~~-~~~~L~~L~l~~n~-l~~~~~~~~~~l~~ 146 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQL-KELPEK-MPKTLQELRVHENE-ITKVRKSVFNGLNQ 146 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCC-SBCCSS-CCTTCCEEECCSSC-CCBBCHHHHTTCTT
T ss_pred hhccCCCCCEEECCCCcCCee-CHHHhcCCCCCCEEECCCCcC-CccChh-hcccccEEECCCCc-ccccCHhHhcCCcc
Confidence 345677777777777655431 122345677777777776642 222111 11566666666554 22221 12355
Q ss_pred eeEEEEecceee------eecCCCCCceEEEEE
Q 014141 235 LLSFKYIGQDIN------LHVGSLPQLVDVVFH 261 (430)
Q Consensus 235 L~~L~~~~~~~~------~~~~~~~~L~~~~i~ 261 (430)
|+.|++.+.... ..+.++++|+.+.+.
T Consensus 147 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred ccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 666655544221 123344555555554
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.59 E-value=2e-05 Score=71.95 Aligned_cols=123 Identities=15% Similarity=0.177 Sum_probs=60.5
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEEE----eCCceeE
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEI----SAPNLLS 237 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~i----~~P~L~~ 237 (430)
++|++|+|.+..+++-. ...+.++++|+.|.+.++. ++.+.. -..+++|+.|.+.++. +..+.. ..++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCCEEC-TTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCE
T ss_pred CCccEEECCCCcccccC-HhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccE
Confidence 34666666655443211 0123455666666666553 222211 1233556666665544 232221 2356666
Q ss_pred EEEecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141 238 FKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 291 (430)
Q Consensus 238 L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~ 291 (430)
|.+.+.... ..+..+++|+.+.+..+..... .+...+..+++|+.|++..+.
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC--CCCGGGGGCTTCCEEECCSSC
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCcccee--cCchhhccCCCCCEEECCCCC
Confidence 666554321 2345666777777664432210 011345667788888887665
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.58 E-value=4.1e-05 Score=69.72 Aligned_cols=166 Identities=11% Similarity=0.091 Sum_probs=82.5
Q ss_pred CCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEE----eCCceeE
Q 014141 162 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI----SAPNLLS 237 (430)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i----~~P~L~~ 237 (430)
.+++|+.|.+.+..+.+- .. +..+|+|+.|.+.++.. +.+..-..+++|+.|.+.++. +..+.- ..++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~-l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QG-IQYLPNVRYLALGGNKL-HDISALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TT-GGGCTTCCEEECTTSCC-CCCGGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred cccceeeeeeCCCCcccc--cc-cccCCCCcEEECCCCCC-CCchhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCE
Confidence 446666666666554431 11 44567777777766642 222222344667777766654 332221 2366666
Q ss_pred EEEecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccc--cCCCCccceEEEE
Q 014141 238 FKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFS--QREFPKLMNLNIS 311 (430)
Q Consensus 238 L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l--~~~~~~L~~L~l~ 311 (430)
|.+.+..+. ..+..+++|+.+.+..+...... ...+..+++|+.|.+..+. +..... ...+++|++|++.
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP---KGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccC---HHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECC
Confidence 666655332 11345566666666544322100 0234566677777776665 321110 1125566666664
Q ss_pred EeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141 312 FTAANQETLLGLSFIMKACPFLEKLVLQI 340 (430)
Q Consensus 312 ~~~~~~~~~~~l~~lL~~~p~L~~L~l~~ 340 (430)
...-.. . ....+..+++|+.|++..
T Consensus 190 ~N~l~~--~--~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 190 QNQLKS--V--PDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp SSCCSC--C--CTTTTTTCTTCCEEECCS
T ss_pred CCcCCc--c--CHHHHhCCcCCCEEEccC
Confidence 332111 1 113455667777777744
No 87
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.58 E-value=1.8e-05 Score=77.57 Aligned_cols=38 Identities=18% Similarity=0.394 Sum_probs=35.7
Q ss_pred cccCCCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhhc
Q 014141 20 EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLW 57 (430)
Q Consensus 20 ~d~is~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~lw 57 (430)
.|.|+.||+|++.+||++|+.+|+++++.|||+|+++-
T Consensus 12 ~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~ 49 (464)
T 3v7d_B 12 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII 49 (464)
T ss_dssp CCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHH
T ss_pred cCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999998753
No 88
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.57 E-value=4.2e-06 Score=68.76 Aligned_cols=61 Identities=18% Similarity=0.065 Sum_probs=37.3
Q ss_pred CCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecC
Q 014141 162 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCY 223 (430)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~ 223 (430)
.+++|+.|++.++.+++..+...+..+++|+.|.+.+|. ++.+..-..+++|+.|.+.++.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~ 75 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNR 75 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCc
Confidence 347777888877777644444556677888888887773 3322222334566666666554
No 89
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.56 E-value=0.001 Score=66.34 Aligned_cols=97 Identities=18% Similarity=0.098 Sum_probs=45.3
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee--EecCCCCcceEEEeecCCccEEEE-eCCceeEEEE
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIEI-SAPNLLSFKY 240 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~--i~~~~~~L~~L~l~~c~~l~~i~i-~~P~L~~L~~ 240 (430)
++|++|+|++..+.+-. ...+.++++|+.|.|.++.. +.+. .-..+++|+.|++.++. +..+.. ..++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELW-TSDILSLSKLRILIISHNRI-QYLDISVFKFNQELEYLDLSHNK-LVKISCHPTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCC-HHHHTTCTTCCEEECCSSCC-CEEEGGGGTTCTTCCEEECCSSC-CCEEECCCCCCCSEEEC
T ss_pred ccccEEECCCCcccccC-hhhccccccccEEecCCCcc-CCcChHHhhcccCCCEEecCCCc-eeecCccccCCccEEec
Confidence 55666666655543311 12244556666666655532 2211 11234556666665543 333221 3455566655
Q ss_pred eccee-----eeecCCCCCceEEEEEee
Q 014141 241 IGQDI-----NLHVGSLPQLVDVVFHVT 263 (430)
Q Consensus 241 ~~~~~-----~~~~~~~~~L~~~~i~~~ 263 (430)
.+..+ +..++.+++|+.+.+..+
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTT 125 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred cCCccccccchhhhccCCcceEEEecCc
Confidence 54422 123445555666655543
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.55 E-value=2.5e-05 Score=71.23 Aligned_cols=172 Identities=16% Similarity=0.102 Sum_probs=97.8
Q ss_pred CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEE---EE-eC
Q 014141 159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEI---EI-SA 232 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i---~i-~~ 232 (430)
.+.++++|++|+|.+..+..-. ...+..+++|+.|.|.++.. +.+.. -..+++|+.|.+.++. +..+ .+ ..
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 123 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHL 123 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTC
T ss_pred HhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCcc-CccChhhhcCCccccEEECCCCC-ccccCchhcccC
Confidence 5678899999999988665311 12356789999999998853 22221 1345789999988765 2221 12 45
Q ss_pred CceeEEEEeccee-----eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCce-EEEEecceeeecccccCC---CC
Q 014141 233 PNLLSFKYIGQDI-----NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLK-TLELDGCNEVFAQFSQRE---FP 303 (430)
Q Consensus 233 P~L~~L~~~~~~~-----~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~-~L~l~~~~~~~~~~l~~~---~~ 303 (430)
++|++|.+.+... +..+..+++|+.+.+..+...........-+..++.+. .|.+..+. +.. ++.. ..
T Consensus 124 ~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~-l~~--~~~~~~~~~ 200 (276)
T 2z62_A 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNF--IQPGAFKEI 200 (276)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC-CCE--ECTTSSCSC
T ss_pred CCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc-ccc--cCccccCCC
Confidence 7899999887643 22456778899988876543321111112223333333 66666554 221 1111 23
Q ss_pred ccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141 304 KLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI 340 (430)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~ 340 (430)
+|++|+++...-.. . ...++..+++|+.|++..
T Consensus 201 ~L~~L~L~~n~l~~--~--~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 201 RLKELALDTNQLKS--V--PDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp CEEEEECCSSCCSC--C--CTTTTTTCCSCCEEECCS
T ss_pred cccEEECCCCceee--c--CHhHhcccccccEEEccC
Confidence 56666664332111 1 113445667777776643
No 91
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.48 E-value=9.2e-05 Score=67.09 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=19.4
Q ss_pred CCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccC
Q 014141 161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQS 199 (430)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~ 199 (430)
..+++|++|+|.+..+++-. . +..+++|+.|.|.++
T Consensus 60 ~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 60 QFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRN 95 (263)
T ss_dssp GGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSS
T ss_pred hhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCC
Confidence 45566666666655554311 1 455566666666555
No 92
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.48 E-value=5.7e-05 Score=80.34 Aligned_cols=101 Identities=13% Similarity=0.080 Sum_probs=49.1
Q ss_pred CCCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCcee-eEecCCCCcceEEEeecCCccEEE----EeC
Q 014141 158 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIE----ISA 232 (430)
Q Consensus 158 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~-~i~~~~~~L~~L~l~~c~~l~~i~----i~~ 232 (430)
..+..+++|+.|+|.+..+.... ...+.++++|+.|.|.++...... ..-..+++|+.|.+.++. +..+. -..
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l 361 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFL 361 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCEEC-TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSC
T ss_pred hhhhcCCCCCEEECCCCcCCCCC-hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhcCC
Confidence 34556677777777766554311 122456677777777666421110 011234566666666553 22221 124
Q ss_pred CceeEEEEecceeeeecCCCCCceEEEEE
Q 014141 233 PNLLSFKYIGQDINLHVGSLPQLVDVVFH 261 (430)
Q Consensus 233 P~L~~L~~~~~~~~~~~~~~~~L~~~~i~ 261 (430)
|+|+.|.+.+.... .+..+++|+.+.+.
T Consensus 362 ~~L~~L~Ls~N~l~-~i~~~~~L~~L~l~ 389 (844)
T 3j0a_A 362 EKLQTLDLRDNALT-TIHFIPSIPDIFLS 389 (844)
T ss_dssp CCCCEEEEETCCSC-CCSSCCSCSEEEEE
T ss_pred CCCCEEECCCCCCC-cccCCCCcchhccC
Confidence 56666666555332 12234455555554
No 93
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.46 E-value=0.00043 Score=73.50 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=23.9
Q ss_pred CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccC
Q 014141 160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQS 199 (430)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~ 199 (430)
+.++++|++|+|++..+.+......++.+++|+.|.|.++
T Consensus 119 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred ccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 4566667777776665544333334556666666666655
No 94
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.42 E-value=4.7e-05 Score=78.84 Aligned_cols=123 Identities=13% Similarity=0.044 Sum_probs=54.9
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee--EecCCCCcceEEEeecCCccEEE----EeCCceeE
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIE----ISAPNLLS 237 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~--i~~~~~~L~~L~l~~c~~l~~i~----i~~P~L~~ 237 (430)
++|+.|+|.++.+.+-. ...+..+++|+.|.|.++.....+. .-..+++|+.|.+.++. +..+. ...|+|+.
T Consensus 381 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~ 458 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIE-SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQR 458 (680)
T ss_dssp SCCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCE
T ss_pred CcCceEECCCCCCCeEC-hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCccccc
Confidence 45666666665443211 1224456666666666654322111 11234556666665554 11110 02355666
Q ss_pred EEEeccee------eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141 238 FKYIGQDI------NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 291 (430)
Q Consensus 238 L~~~~~~~------~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~ 291 (430)
|.+.+... +..+.++++|+.+.+..+....... ..+.++++|+.|++..+.
T Consensus 459 L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~---~~~~~l~~L~~L~Ls~N~ 515 (680)
T 1ziw_A 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND---DMLEGLEKLEILDLQHNN 515 (680)
T ss_dssp EECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSC
T ss_pred chhccccccccccCCcccccCCCCCEEECCCCCCCcCCh---hhhccccccCEEeCCCCC
Confidence 65554322 1223445555555555332211000 223455556666655543
No 95
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.41 E-value=3.3e-05 Score=72.47 Aligned_cols=81 Identities=17% Similarity=0.153 Sum_probs=46.0
Q ss_pred CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE----EeCCc
Q 014141 159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE----ISAPN 234 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~----i~~P~ 234 (430)
.+.++++|++|+|.+..++.- ....+.++++|+.|.+.++.- +.+.... .++|+.|.+.++. +..+. -..++
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l-~~l~~~~-~~~L~~L~l~~n~-i~~~~~~~~~~l~~ 148 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYISKNHL-VEIPPNL-PSSLVELRIHDNR-IRKVPKGVFSGLRN 148 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEECCSSCC-CSCCSSC-CTTCCEEECCSSC-CCCCCSGGGSSCSS
T ss_pred HhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEECCCCcC-CccCccc-cccCCEEECCCCc-cCccCHhHhCCCcc
Confidence 456778888888877765431 122356778888888877642 2221111 1567777776654 22221 12466
Q ss_pred eeEEEEecc
Q 014141 235 LLSFKYIGQ 243 (430)
Q Consensus 235 L~~L~~~~~ 243 (430)
|+.|.+.+.
T Consensus 149 L~~L~l~~n 157 (332)
T 2ft3_A 149 MNCIEMGGN 157 (332)
T ss_dssp CCEEECCSC
T ss_pred CCEEECCCC
Confidence 666666654
No 96
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.41 E-value=0.00011 Score=65.39 Aligned_cols=166 Identities=11% Similarity=0.067 Sum_probs=99.1
Q ss_pred CCCCCCCCceEEEeeEE-EcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCCccEEE--EeCC
Q 014141 159 GLSGIKSLRSLTLCAVN-VTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIE--ISAP 233 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~l~~i~--i~~P 233 (430)
.+.++++|++|+|.+.. ++.-. ...+.++++|+.|.+.+|..++.+... ..+++|+.|.+.++. +..+. -..+
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~ 127 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVY 127 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCCCTTCC
T ss_pred HccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Ccccccccccc
Confidence 45688999999999875 53210 113578999999999986666654321 256889999998875 22221 1335
Q ss_pred cee---EEEEecc-eee-e---ecCCCCCce-EEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccC----
Q 014141 234 NLL---SFKYIGQ-DIN-L---HVGSLPQLV-DVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR---- 300 (430)
Q Consensus 234 ~L~---~L~~~~~-~~~-~---~~~~~~~L~-~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~---- 300 (430)
+|+ +|++.+. ... + .+.++++|+ .+.+..+.... +.. ..+.. ++|+.|.+..+..+. .++.
T Consensus 128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~--~~~~~-~~L~~L~L~~n~~l~--~i~~~~~~ 201 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQG--YAFNG-TKLDAVYLNKNKYLT--VIDKDAFG 201 (239)
T ss_dssp BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECT--TTTTT-CEEEEEECTTCTTCC--EECTTTTT
T ss_pred ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCH--hhcCC-CCCCEEEcCCCCCcc--cCCHHHhh
Confidence 565 8888876 442 1 245677888 88776443321 110 22233 689999997773122 2222
Q ss_pred CC-CccceEEEEEeecCccchhhHHHHHhhCCCceEEEEE
Q 014141 301 EF-PKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQ 339 (430)
Q Consensus 301 ~~-~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~ 339 (430)
.+ ++|+.|+++...-. .+.. ..+++|+.|.+.
T Consensus 202 ~l~~~L~~L~l~~N~l~-----~l~~--~~~~~L~~L~l~ 234 (239)
T 2xwt_C 202 GVYSGPSLLDVSQTSVT-----ALPS--KGLEHLKELIAR 234 (239)
T ss_dssp TCSBCCSEEECTTCCCC-----CCCC--TTCTTCSEEECT
T ss_pred ccccCCcEEECCCCccc-----cCCh--hHhccCceeecc
Confidence 24 67888887443211 1111 157788888773
No 97
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.38 E-value=0.00011 Score=68.91 Aligned_cols=166 Identities=16% Similarity=0.120 Sum_probs=104.8
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee--EecCCCCcceEEEeecCCccEEEE-eCCceeEEEE
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIEI-SAPNLLSFKY 240 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~--i~~~~~~L~~L~l~~c~~l~~i~i-~~P~L~~L~~ 240 (430)
++|+.|+|.+..+++-. ...+..+++|+.|.|.++.. +.+. .-..+++|+.|.+.++. +..+.. ..++|++|.+
T Consensus 52 ~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCCTTCCEEEC
T ss_pred CCCeEEECCCCcCCEeC-hhhhccCCCCCEEECCCCcC-CeeCHHHhcCCCCCCEEECCCCc-CCccChhhcccccEEEC
Confidence 78999999998776421 12367899999999998853 2221 12356899999998876 443322 2378999999
Q ss_pred ecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCC-CCccceEEEEEeec
Q 014141 241 IGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE-FPKLMNLNISFTAA 315 (430)
Q Consensus 241 ~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~-~~~L~~L~l~~~~~ 315 (430)
.+..+. ..+.++++|+.+.+..+.... .+.....+..+++|+.|.+..+. +. .+|.. +++|++|+++...-
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~-l~--~l~~~~~~~L~~L~l~~n~l 204 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKS-SGIENGAFQGMKKLSYIRIADTN-IT--TIPQGLPPSLTELHLDGNKI 204 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCG-GGBCTTGGGGCTTCCEEECCSSC-CC--SCCSSCCTTCSEEECTTSCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCc-cCcChhhccCCCCcCEEECCCCc-cc--cCCccccccCCEEECCCCcC
Confidence 877442 235678999999988554321 01111445778899999987765 32 12222 46777777643221
Q ss_pred CccchhhHHHHHhhCCCceEEEEEE
Q 014141 316 NQETLLGLSFIMKACPFLEKLVLQI 340 (430)
Q Consensus 316 ~~~~~~~l~~lL~~~p~L~~L~l~~ 340 (430)
... ....+..+++|+.|++..
T Consensus 205 ~~~----~~~~~~~l~~L~~L~Ls~ 225 (330)
T 1xku_A 205 TKV----DAASLKGLNNLAKLGLSF 225 (330)
T ss_dssp CEE----CTGGGTTCTTCCEEECCS
T ss_pred Ccc----CHHHhcCCCCCCEEECCC
Confidence 111 123455677777777744
No 98
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.35 E-value=0.00011 Score=66.87 Aligned_cols=63 Identities=19% Similarity=0.130 Sum_probs=42.0
Q ss_pred CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee--EecCCCCcceEEEeecC
Q 014141 159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCY 223 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~--i~~~~~~L~~L~l~~c~ 223 (430)
.+.++++|++|+|.+..++.- -..++..+++|+.|.|.++.. +.+. .-..+++|+.|.+.++.
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~ 120 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQ 120 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCC-CCCCTTTTTTCSSCCEEECCSSC
T ss_pred HhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcC-CcCCHhHcccccCCCEEECCCCc
Confidence 456889999999998876531 123456789999999988753 2221 11244677777777654
No 99
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.33 E-value=9.5e-05 Score=72.07 Aligned_cols=37 Identities=22% Similarity=0.464 Sum_probs=35.2
Q ss_pred cccCCCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhh
Q 014141 20 EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYL 56 (430)
Q Consensus 20 ~d~is~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~l 56 (430)
.|.++.||+|++.+||+||+.+|+++++.|||+|+.+
T Consensus 16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 5889999999999999999999999999999999873
No 100
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.32 E-value=5.9e-05 Score=73.38 Aligned_cols=36 Identities=22% Similarity=0.428 Sum_probs=34.5
Q ss_pred cccCCCCCHH----HHHHHHhcCChHHHHHHHHhhhhhhh
Q 014141 20 EDWFSRFPDD----ILIHIISGLTLKEAARTSVLSSRWKY 55 (430)
Q Consensus 20 ~d~is~LPde----iL~~Ils~L~~~d~~rts~vSrrWr~ 55 (430)
.|.|+.||+| |+.+||++|+.++++++++|||+|++
T Consensus 8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~ 47 (435)
T 1p22_A 8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR 47 (435)
T ss_dssp CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 5889999999 99999999999999999999999995
No 101
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.31 E-value=4.3e-05 Score=64.65 Aligned_cols=60 Identities=13% Similarity=0.060 Sum_probs=36.6
Q ss_pred CCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecC
Q 014141 161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCY 223 (430)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~ 223 (430)
..+++|+.|.|.++.++. +..+...+|+|+.|.+.++. ++.+..-..+++|+.|.+.++.
T Consensus 16 ~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~ 75 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR 75 (176)
T ss_dssp ECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC
T ss_pred CCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCc
Confidence 355778888888776653 23334445688888888774 3333222345667777776654
No 102
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.26 E-value=0.00014 Score=74.65 Aligned_cols=175 Identities=10% Similarity=0.098 Sum_probs=98.3
Q ss_pred CCCCCCCCCCCCceEEEeeEE-EcchhH----HHH--hhcCCcccceeeccCCCCceeeE---ecCCCCcceEEEeecCC
Q 014141 155 QSGCGLSGIKSLRSLTLCAVN-VTGEVV----EFF--IHNCPLLENLRITQSPDLLSLKV---VGSSIPLKCLDIQFCYS 224 (430)
Q Consensus 155 ~~p~~~~~~~~L~~L~L~~~~-~~~~~l----~~l--l~~cp~Le~L~L~~~~~~~~~~i---~~~~~~L~~L~l~~c~~ 224 (430)
.+|..+.++++|++|+|.+.. +++..+ ..+ +..+++|+.|.+.++... .+.- -..+++|+.|.+.++.-
T Consensus 264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCC
T ss_pred cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcC
Confidence 456777889999999999887 765223 322 234689999999888543 3321 23567899999887762
Q ss_pred ccEEE--EeCCceeEEEEecceee---eecCCCCC-ceEEEEEeecCcchhhHHHHhhcc--CCCceEEEEecceeeecc
Q 014141 225 IKEIE--ISAPNLLSFKYIGQDIN---LHVGSLPQ-LVDVVFHVTPMVQKMHCIGSIVSY--LPQLKTLELDGCNEVFAQ 296 (430)
Q Consensus 225 l~~i~--i~~P~L~~L~~~~~~~~---~~~~~~~~-L~~~~i~~~~~~~~~~~~~~l~~~--~~~l~~L~l~~~~~~~~~ 296 (430)
...+. -..++|+.|.+.+.... -.+..+++ |+.+.+..+... . +...+.. +++|+.|++..+. +..
T Consensus 343 ~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~---lp~~~~~~~l~~L~~L~Ls~N~-l~~- 416 (636)
T 4eco_A 343 EGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-Y---IPNIFDAKSVSVMSAIDFSYNE-IGS- 416 (636)
T ss_dssp EEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-S---CCSCCCTTCSSCEEEEECCSSC-TTT-
T ss_pred ccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-c---cchhhhhcccCccCEEECcCCc-CCC-
Confidence 11332 13467788877766443 12344566 777777654432 1 1111222 2367777776655 221
Q ss_pred cccCC----------CCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141 297 FSQRE----------FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI 340 (430)
Q Consensus 297 ~l~~~----------~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~ 340 (430)
..|.. .++|++|+++...-. .. -..+++.+++|+.|++..
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~--~l--p~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNNQIS--KF--PKELFSTGSPLSSINLMG 466 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSSCCC--SC--CTHHHHTTCCCSEEECCS
T ss_pred cchhhhcccccccccCCCCCEEECcCCccC--cC--CHHHHccCCCCCEEECCC
Confidence 11111 335666666433211 11 123555677777777654
No 103
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.22 E-value=0.00082 Score=67.78 Aligned_cols=82 Identities=17% Similarity=0.185 Sum_probs=42.9
Q ss_pred CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEE-----eCC
Q 014141 159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI-----SAP 233 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i-----~~P 233 (430)
.+.++++|++|+|.+..+++-. ...+.++++|+.|+|.++. ++.+... .+++|+.|.++++. +..+.+ ..+
T Consensus 71 ~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~ 146 (562)
T 3a79_B 71 DISFLSELRVLRLSHNRIRSLD-FHVFLFNQDLEYLDVSHNR-LQNISCC-PMASLRHLDLSFND-FDVLPVCKEFGNLT 146 (562)
T ss_dssp GTTTCTTCCEEECCSCCCCEEC-TTTTTTCTTCCEEECTTSC-CCEECSC-CCTTCSEEECCSSC-CSBCCCCGGGGGCT
T ss_pred hhccCCCccEEECCCCCCCcCC-HHHhCCCCCCCEEECCCCc-CCccCcc-ccccCCEEECCCCC-ccccCchHhhcccC
Confidence 3456667777777666554311 1224556677777776664 2222222 44666666666654 332221 235
Q ss_pred ceeEEEEecce
Q 014141 234 NLLSFKYIGQD 244 (430)
Q Consensus 234 ~L~~L~~~~~~ 244 (430)
+|++|++.+..
T Consensus 147 ~L~~L~L~~n~ 157 (562)
T 3a79_B 147 KLTFLGLSAAK 157 (562)
T ss_dssp TCCEEEEECSB
T ss_pred cccEEecCCCc
Confidence 66666665543
No 104
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.17 E-value=0.00017 Score=66.26 Aligned_cols=162 Identities=15% Similarity=0.134 Sum_probs=93.2
Q ss_pred CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE---E-eCCc
Q 014141 159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE---I-SAPN 234 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~---i-~~P~ 234 (430)
.+.++++|+.|.|.+..++.-.. ...+|+|+.|.|.++..-.-......+++|+.|.+.++. +..+. + ..++
T Consensus 50 ~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~ 125 (290)
T 1p9a_G 50 TLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGE 125 (290)
T ss_dssp GGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTT
T ss_pred HhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCC
Confidence 34678999999998886654211 157899999999887432111112345788888887765 33332 1 2467
Q ss_pred eeEEEEecceee----eecCCCCCceEEEEEeecCcchhhHHH-HhhccCCCceEEEEecceeeecccccCC---CCccc
Q 014141 235 LLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLM 306 (430)
Q Consensus 235 L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~-~l~~~~~~l~~L~l~~~~~~~~~~l~~~---~~~L~ 306 (430)
|++|.+.+..+. ..+..+++|+.+.+..+.... +. ..+..+++|+.|.+..+. +. .+|.. ..+|+
T Consensus 126 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----l~~~~~~~l~~L~~L~L~~N~-l~--~ip~~~~~~~~L~ 198 (290)
T 1p9a_G 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE----LPAGLLNGLENLDTLLLQENS-LY--TIPKGFFGSHLLP 198 (290)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC----CCTTTTTTCTTCCEEECCSSC-CC--CCCTTTTTTCCCS
T ss_pred CCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc----cCHHHhcCcCCCCEEECCCCc-CC--ccChhhcccccCC
Confidence 888877766442 123456677777766443221 11 344667788888877665 32 23332 44677
Q ss_pred eEEEEEee-cCccchhhHHHHHhhCC
Q 014141 307 NLNISFTA-ANQETLLGLSFIMKACP 331 (430)
Q Consensus 307 ~L~l~~~~-~~~~~~~~l~~lL~~~p 331 (430)
+|.|.... ....+...+...++.-+
T Consensus 199 ~l~L~~Np~~C~c~~~~l~~wl~~~~ 224 (290)
T 1p9a_G 199 FAFLHGNPWLCNCEILYFRRWLQDNA 224 (290)
T ss_dssp EEECCSCCBCCSGGGHHHHHHHHHTG
T ss_pred eEEeCCCCccCcCccHHHHHHHHhCc
Confidence 77764321 11234445555665544
No 105
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.14 E-value=0.00024 Score=69.78 Aligned_cols=153 Identities=15% Similarity=0.119 Sum_probs=99.6
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEEeCCceeEEEEecc
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQ 243 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~~ 243 (430)
++|++|++.++.+.. +.. +..+++|+.|.+.++.- +. +....++|+.|.+.++. +..+.-..++|+.|++.+.
T Consensus 215 ~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~l-~~--l~~~~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 215 LSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNLL-KT--LPDLPPSLEALNVRDNY-LTDLPELPQSLTFLDVSEN 287 (454)
T ss_dssp TTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCC-SS--CCSCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred CcccEEECcCCcCCc--ccc-cCCCCCCCEEECCCCcC-Cc--ccccccccCEEECCCCc-ccccCcccCcCCEEECcCC
Confidence 689999999887752 332 67899999999998753 22 22233789999998876 4444334578999998877
Q ss_pred eeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeecCccchhhH
Q 014141 244 DINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGL 323 (430)
Q Consensus 244 ~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l 323 (430)
.....-.-.++|+.+.+..+... .+....++|+.|++..+. +. .+|..+++|+.|+++...-. . +
T Consensus 288 ~l~~l~~~~~~L~~L~l~~N~l~-------~i~~~~~~L~~L~Ls~N~-l~--~lp~~~~~L~~L~L~~N~l~--~---l 352 (454)
T 1jl5_A 288 IFSGLSELPPNLYYLNASSNEIR-------SLCDLPPSLEELNVSNNK-LI--ELPALPPRLERLIASFNHLA--E---V 352 (454)
T ss_dssp CCSEESCCCTTCCEEECCSSCCS-------EECCCCTTCCEEECCSSC-CS--CCCCCCTTCCEEECCSSCCS--C---C
T ss_pred ccCcccCcCCcCCEEECcCCcCC-------cccCCcCcCCEEECCCCc-cc--cccccCCcCCEEECCCCccc--c---c
Confidence 54321122367888887754332 222222589999988766 43 35555789999988554221 1 2
Q ss_pred HHHHhhCCCceEEEEEEe
Q 014141 324 SFIMKACPFLEKLVLQIW 341 (430)
Q Consensus 324 ~~lL~~~p~L~~L~l~~~ 341 (430)
.. .+++|+.|++...
T Consensus 353 p~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 353 PE---LPQNLKQLHVEYN 367 (454)
T ss_dssp CC---CCTTCCEEECCSS
T ss_pred cc---hhhhccEEECCCC
Confidence 22 3689999988653
No 106
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.05 E-value=0.00023 Score=73.64 Aligned_cols=175 Identities=15% Similarity=0.085 Sum_probs=91.0
Q ss_pred CCCCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCC--ccEE---E
Q 014141 157 GCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYS--IKEI---E 229 (430)
Q Consensus 157 p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~--l~~i---~ 229 (430)
|..+.++++|+.|+|.+..+.+..-...+.++++|+.|.+.++.. ..+.. -..+++|+.|.+.++.- +..+ -
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~ 476 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY-LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSE-EECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCc-ceeChhhhhcCcccccchhccccccccccCCccc
Confidence 456678899999999988665432223467889999999988752 11110 11346777777766541 0000 0
Q ss_pred EeCCceeEEEEecceee----eecCCCCCceEEEEEeecCcchhhHHH-----HhhccCCCceEEEEecceeeecccccC
Q 014141 230 ISAPNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIG-----SIVSYLPQLKTLELDGCNEVFAQFSQR 300 (430)
Q Consensus 230 i~~P~L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~-----~l~~~~~~l~~L~l~~~~~~~~~~l~~ 300 (430)
-..++|+.|++.+..+. ..+.++++|+.+.+..+.......... ..+.++++|+.|++..+. +. .+|.
T Consensus 477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~--~i~~ 553 (680)
T 1ziw_A 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FD--EIPV 553 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CC--CCCT
T ss_pred ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CC--CCCH
Confidence 12456777777665332 124456667777666443221100000 124566677777776654 32 2222
Q ss_pred ----CCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEE
Q 014141 301 ----EFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQ 339 (430)
Q Consensus 301 ----~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~ 339 (430)
.+++|+.|+++...-. .. -...+..+++|+.|++.
T Consensus 554 ~~~~~l~~L~~L~Ls~N~l~--~l--~~~~~~~l~~L~~L~L~ 592 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNNLN--TL--PASVFNNQVSLKSLNLQ 592 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCC--CC--CTTTTTTCTTCCEEECT
T ss_pred HHcccccCcceeECCCCCCC--cC--CHhHhCCCCCCCEEECC
Confidence 1445555555322111 00 01234555666666663
No 107
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.02 E-value=3.6e-05 Score=73.54 Aligned_cols=163 Identities=18% Similarity=0.182 Sum_probs=86.9
Q ss_pred CCCceEEEeeEEEcchh---HHHHhh-cCCcccceeeccCCCCce-e-eEecCCCCcceEEEeecCCccEEEEeCCceeE
Q 014141 164 KSLRSLTLCAVNVTGEV---VEFFIH-NCPLLENLRITQSPDLLS-L-KVVGSSIPLKCLDIQFCYSIKEIEISAPNLLS 237 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~---l~~ll~-~cp~Le~L~L~~~~~~~~-~-~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~ 237 (430)
++|++|+|.++.+++.. +...+. .++.|++|+|.+|..-.. + .+...+++|+.|++.+|. +......
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~------ 144 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACK------ 144 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHH------
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHH------
Confidence 67888888888777643 444444 346888888888742110 0 111122456666666554 1100000
Q ss_pred EEEeccee-eeecCCCCCceEEEEEeecCcc-hhhHHHHhhccCCCceEEEEecceeeeccc---cc---CCCCccceEE
Q 014141 238 FKYIGQDI-NLHVGSLPQLVDVVFHVTPMVQ-KMHCIGSIVSYLPQLKTLELDGCNEVFAQF---SQ---REFPKLMNLN 309 (430)
Q Consensus 238 L~~~~~~~-~~~~~~~~~L~~~~i~~~~~~~-~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~---l~---~~~~~L~~L~ 309 (430)
.+ .......+.|+.+.+..+.... ....+...+..+++|++|+|..+. +.... +. ...++|++|+
T Consensus 145 ------~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~ 217 (372)
T 3un9_A 145 ------DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELN 217 (372)
T ss_dssp ------HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEE
T ss_pred ------HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEE
Confidence 00 0000123455555555433221 112233455677788888887766 43211 11 1256788888
Q ss_pred EEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141 310 ISFTAANQETLLGLSFIMKACPFLEKLVLQI 340 (430)
Q Consensus 310 l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~ 340 (430)
|+.+.-.......+...+..+|+|++|++..
T Consensus 218 Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~ 248 (372)
T 3un9_A 218 VAYNGAGDTAALALARAAREHPSLELLHLYF 248 (372)
T ss_dssp CCSSCCCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCEEeccC
Confidence 8665333333445777888999999999854
No 108
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.00 E-value=9.7e-05 Score=69.26 Aligned_cols=100 Identities=13% Similarity=0.067 Sum_probs=69.1
Q ss_pred CCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee--EecCCCCcceEEEeecCCccEEEE-eCCceeEEE
Q 014141 163 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIEI-SAPNLLSFK 239 (430)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~--i~~~~~~L~~L~l~~c~~l~~i~i-~~P~L~~L~ 239 (430)
+++|+.|+|.+..+..-. ...+..+++|+.|.|.++. ++.+. .-..+++|+.|.+.++. +..+.. ..++|++|.
T Consensus 53 ~~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~L~~L~ 129 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLPSSLVELR 129 (332)
T ss_dssp CTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCCTTCCEEE
T ss_pred CCCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCCc-CCccCccccccCCEEE
Confidence 479999999988765321 1236789999999999885 33331 12356899999998875 333321 127899999
Q ss_pred Eecceee----eecCCCCCceEEEEEeecC
Q 014141 240 YIGQDIN----LHVGSLPQLVDVVFHVTPM 265 (430)
Q Consensus 240 ~~~~~~~----~~~~~~~~L~~~~i~~~~~ 265 (430)
+.+..+. ..+.++++|+.+.+..+..
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence 9877442 2356788999998875543
No 109
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=96.98 E-value=0.0017 Score=65.50 Aligned_cols=119 Identities=18% Similarity=0.149 Sum_probs=82.6
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCCccEEEE-eCCceeEEEE
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIEI-SAPNLLSFKY 240 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~l~~i~i-~~P~L~~L~~ 240 (430)
++|++|+|.+..+++-. ..-+.++++|+.|.|.++. ++.+... ..+++|+.|++.++. +..+.- ..++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELR-MPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNR-LQNISCCPMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTSC-CCEECSCCCTTCSEEEC
T ss_pred CCcCEEECCCCCccccC-hhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCCc-CCccCccccccCCEEEC
Confidence 89999999999876421 2346789999999999984 3333221 356899999999876 444321 5689999999
Q ss_pred ecceee-----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCc--eEEEEecce
Q 014141 241 IGQDIN-----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQL--KTLELDGCN 291 (430)
Q Consensus 241 ~~~~~~-----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l--~~L~l~~~~ 291 (430)
.+..+. -.+.++++|+.+.+..+.... .-+..++++ +.|.+..+.
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~------~~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ------LDLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT------TTTGGGTTSCEEEEEEEESS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCcccc------CchhhhhhceeeEEEeeccc
Confidence 887442 246678999999998654432 112344444 888887654
No 110
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.97 E-value=0.00045 Score=67.81 Aligned_cols=158 Identities=15% Similarity=0.040 Sum_probs=101.9
Q ss_pred CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEEeCCceeEE
Q 014141 159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSF 238 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L 238 (430)
.+.++++|+.|++.+..+++ + -...++|+.|.+.++.. +.+.--..+++|+.|.+.++. +..+.-..++|++|
T Consensus 190 ~~~~l~~L~~L~l~~N~l~~--l---~~~~~~L~~L~l~~n~l-~~lp~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L 262 (454)
T 1jl5_A 190 ELQNLPFLTAIYADNNSLKK--L---PDLPLSLESIVAGNNIL-EELPELQNLPFLTTIYADNNL-LKTLPDLPPSLEAL 262 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSS--C---CCCCTTCCEEECCSSCC-SSCCCCTTCTTCCEEECCSSC-CSSCCSCCTTCCEE
T ss_pred cccCCCCCCEEECCCCcCCc--C---CCCcCcccEEECcCCcC-CcccccCCCCCCCEEECCCCc-CCcccccccccCEE
Confidence 67899999999999887754 1 12346999999999853 333222456889999998875 33333234799999
Q ss_pred EEecceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeecCcc
Q 014141 239 KYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQE 318 (430)
Q Consensus 239 ~~~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 318 (430)
++.+......-...++|+.+.++.+... .+....++|+.|++..+. +.. ++...++|++|+++...-.
T Consensus 263 ~l~~N~l~~l~~~~~~L~~L~ls~N~l~-------~l~~~~~~L~~L~l~~N~-l~~--i~~~~~~L~~L~Ls~N~l~-- 330 (454)
T 1jl5_A 263 NVRDNYLTDLPELPQSLTFLDVSENIFS-------GLSELPPNLYYLNASSNE-IRS--LCDLPPSLEELNVSNNKLI-- 330 (454)
T ss_dssp ECCSSCCSCCCCCCTTCCEEECCSSCCS-------EESCCCTTCCEEECCSSC-CSE--ECCCCTTCCEEECCSSCCS--
T ss_pred ECCCCcccccCcccCcCCEEECcCCccC-------cccCcCCcCCEEECcCCc-CCc--ccCCcCcCCEEECCCCccc--
Confidence 9987754322223467888888754433 222233689999998776 322 2222358999998553221
Q ss_pred chhhHHHHHhhCCCceEEEEEEe
Q 014141 319 TLLGLSFIMKACPFLEKLVLQIW 341 (430)
Q Consensus 319 ~~~~l~~lL~~~p~L~~L~l~~~ 341 (430)
.+. ..+++|+.|++...
T Consensus 331 ---~lp---~~~~~L~~L~L~~N 347 (454)
T 1jl5_A 331 ---ELP---ALPPRLERLIASFN 347 (454)
T ss_dssp ---CCC---CCCTTCCEEECCSS
T ss_pred ---ccc---ccCCcCCEEECCCC
Confidence 111 12589999999653
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=96.92 E-value=0.00033 Score=63.36 Aligned_cols=143 Identities=12% Similarity=0.142 Sum_probs=98.4
Q ss_pred CCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE-EeCCceeEEE
Q 014141 161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-ISAPNLLSFK 239 (430)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~-i~~P~L~~L~ 239 (430)
..+++|+.|++.++.+++- . -+..+++|+.|.|.++.- +.+..-..+++|+.|.+.++. +..+. +..++|+.|.
T Consensus 38 ~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~N~i-~~~~~l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~ 112 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSHNQI-SDLSPLKDLTKLEELSVNRNR-LKNLNGIPSACLSRLF 112 (263)
T ss_dssp HHHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCC-CCCGGGTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEE
T ss_pred hhcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCCCcc-CCChhhccCCCCCEEECCCCc-cCCcCccccCcccEEE
Confidence 4678999999998877542 2 367899999999998853 322223456889999998875 32221 1128899999
Q ss_pred Eecceee--eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEee
Q 014141 240 YIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTA 314 (430)
Q Consensus 240 ~~~~~~~--~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~ 314 (430)
+.+..+. -.+..+++|+.+.+..+..... ..+..+++|+.|.+..+. +........+++|+.|++....
T Consensus 113 L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-----~~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 113 LDNNELRDTDSLIHLKNLEILSIRNNKLKSI-----VMLGFLSKLEVLDLHGNE-ITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CCSSCCSBSGGGTTCTTCCEEECTTSCCCBC-----GGGGGCTTCCEEECTTSC-CCBCTTSTTCCCCCEEEEEEEE
T ss_pred ccCCccCCChhhcCcccccEEECCCCcCCCC-----hHHccCCCCCEEECCCCc-CcchHHhccCCCCCEEeCCCCc
Confidence 9877542 1356788899998875544321 245778999999998877 4443222348889999987654
No 112
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=96.91 E-value=0.00048 Score=61.69 Aligned_cols=122 Identities=13% Similarity=0.107 Sum_probs=56.9
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEE----EeCCceeE
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIE----ISAPNLLS 237 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~----i~~P~L~~ 237 (430)
++|+.|+|.+..+.+-. ...+.++++|+.|.|.++.. +.+.. -..+++|+.|.+.++. +..+. -..++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDK 111 (251)
T ss_dssp TTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCcC-CccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCE
Confidence 56777777766554311 12245667777777776632 22111 1233566666665544 22221 12355555
Q ss_pred EEEecceeee----ecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141 238 FKYIGQDINL----HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 291 (430)
Q Consensus 238 L~~~~~~~~~----~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~ 291 (430)
|.+.+..+.. .+..+++|+.+.+..+....... ..+..+++|+.|++..+.
T Consensus 112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA---GAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSC
T ss_pred EEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH---HHcCcCcCCCEEECCCCc
Confidence 5555543321 12344555555554332211000 223455566666665554
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.88 E-value=0.00043 Score=69.82 Aligned_cols=72 Identities=13% Similarity=0.095 Sum_probs=29.5
Q ss_pred CCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEEeCCceeEEEEec
Q 014141 163 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIG 242 (430)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~ 242 (430)
+++|++|+|.+..++. +.. +.. +|+.|.|.++.. +.+.- .+++|+.|.+.++. +..+.-..++|+.|.+.+
T Consensus 99 l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~Ls~N~l-~~lp~--~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 99 PASLEYLDACDNRLST--LPE-LPA--SLKHLDVDNNQL-TMLPE--LPALLEYINADNNQ-LTMLPELPTSLEVLSVRN 169 (571)
T ss_dssp CTTCCEEECCSSCCSC--CCC-CCT--TCCEEECCSSCC-SCCCC--CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred cCCCCEEEccCCCCCC--cch-hhc--CCCEEECCCCcC-CCCCC--cCccccEEeCCCCc-cCcCCCcCCCcCEEECCC
Confidence 4555555555544432 111 111 555555554421 11111 23455555555443 222222334555555544
Q ss_pred c
Q 014141 243 Q 243 (430)
Q Consensus 243 ~ 243 (430)
+
T Consensus 170 N 170 (571)
T 3cvr_A 170 N 170 (571)
T ss_dssp S
T ss_pred C
Confidence 4
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=96.88 E-value=0.00059 Score=56.87 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=76.1
Q ss_pred cCCcccceeeccCCCC-ceeeE-ecCCCCcceEEEeecCCccEEEEeCCceeEEEEecceeeeecCCCCCceEEEEEeec
Q 014141 187 NCPLLENLRITQSPDL-LSLKV-VGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTP 264 (430)
Q Consensus 187 ~cp~Le~L~L~~~~~~-~~~~i-~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~~~~~~~~~~~~~L~~~~i~~~~ 264 (430)
..+.|+.|.+.+|..- ..+.- ...+++|+.|.+.++. +..+ -.+..+++|+.+.+..+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~------------------~~~~~l~~L~~L~Ls~N~ 82 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV------------------SNLPKLPKLKKLELSENR 82 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC------------------SSCCCCSSCCEEEEESCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh------------------hhhccCCCCCEEECcCCc
Confidence 3578999999888532 12211 1234566666666654 2221 123455666666666444
Q ss_pred CcchhhHHHHhhccCCCceEEEEecceeeeccc---ccCCCCccceEEEEEeecCccchhh-HHHHHhhCCCceEEEEEE
Q 014141 265 MVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF---SQREFPKLMNLNISFTAANQETLLG-LSFIMKACPFLEKLVLQI 340 (430)
Q Consensus 265 ~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~---l~~~~~~L~~L~l~~~~~~~~~~~~-l~~lL~~~p~L~~L~l~~ 340 (430)
.... +..++..+++|+.|.+..+. +.... ....+++|++|++....-. .... ....+..+|+|+.|++..
T Consensus 83 l~~~---~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~--~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 83 IFGG---LDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVT--NLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp CCSC---CCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGG--TSTTHHHHHHTTCSSCCEETTEE
T ss_pred CchH---HHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCc--chHHHHHHHHHhCccCcEecCCC
Confidence 3321 11445668899999998876 44321 1223778888888553211 1111 124788999999999877
Q ss_pred ec
Q 014141 341 WN 342 (430)
Q Consensus 341 ~~ 342 (430)
..
T Consensus 157 n~ 158 (168)
T 2ell_A 157 RE 158 (168)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 115
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=96.70 E-value=0.0005 Score=61.58 Aligned_cols=127 Identities=17% Similarity=0.141 Sum_probs=80.5
Q ss_pred CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee--EecCCCCcceEEEeecCCccEEEE----eC
Q 014141 159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIEI----SA 232 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~--i~~~~~~L~~L~l~~c~~l~~i~i----~~ 232 (430)
.+.++++|++|+|.+..+.+- ....+..+++|+.|.|.++.. +.+. .-..+++|+.|.+.++. +..+.- ..
T Consensus 54 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l 130 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRL 130 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred HhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcc-cccChhHhcccCCCCEEEcCCCc-CCCcChhHhccC
Confidence 456788999999988876542 123356788899999888743 2221 11345788888888765 443321 35
Q ss_pred CceeEEEEecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141 233 PNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 291 (430)
Q Consensus 233 P~L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~ 291 (430)
++|+.|.+.+..+. ..+..+++|+.+.+..+....... ..+..+++|+.|.+.++.
T Consensus 131 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH---GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSCC
T ss_pred CcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH---HHHhCCCCCCEEEeeCCc
Confidence 78889988877442 135567889998887554331110 234566677777776665
No 116
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.69 E-value=2.2e-05 Score=67.85 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=22.0
Q ss_pred CCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccC
Q 014141 161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQS 199 (430)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~ 199 (430)
..+++|++|+|.+..+++ +. .+..+++|+.|.+.++
T Consensus 45 ~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n 80 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRN 80 (198)
T ss_dssp HHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEE
T ss_pred hcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCC
Confidence 455667777777666654 22 3455666666666665
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.67 E-value=0.00044 Score=59.91 Aligned_cols=144 Identities=15% Similarity=0.084 Sum_probs=72.7
Q ss_pred CCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEEEeCCceeEEEE
Q 014141 163 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKY 240 (430)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~ 240 (430)
.++|+.|+|.+..++.- ....+..+++|++|.+.++.. +.+.. -..+++|+.|.+.++. +..+.-
T Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~---------- 93 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQ-LQSLPN---------- 93 (208)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCT----------
T ss_pred CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCcc-CccChhhcCCCCCcCEEECCCCc-CCccCH----------
Confidence 46788888888766531 123456788888888887642 22211 1234566666666554 221110
Q ss_pred ecceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeeccc--ccCCCCccceEEEEEeecCcc
Q 014141 241 IGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNLNISFTAANQE 318 (430)
Q Consensus 241 ~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~ 318 (430)
..+..+++|+.+.+..+...... ...+..+++|+.|.+..+. +.... ....+++|++|++....
T Consensus 94 ------~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~---- 159 (208)
T 2o6s_A 94 ------GVFDKLTQLKELALNTNQLQSLP---DGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP---- 159 (208)
T ss_dssp ------TTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC----
T ss_pred ------hHhcCccCCCEEEcCCCcCcccC---HhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC----
Confidence 11234444555544432221100 0234566778888877665 32111 01125677777764321
Q ss_pred chhhHHHHHhhCCCceEEEEEE
Q 014141 319 TLLGLSFIMKACPFLEKLVLQI 340 (430)
Q Consensus 319 ~~~~l~~lL~~~p~L~~L~l~~ 340 (430)
+...||+|+.|.+..
T Consensus 160 -------~~~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 160 -------WDCTCPGIRYLSEWI 174 (208)
T ss_dssp -------BCCCTTTTHHHHHHH
T ss_pred -------eecCCCCHHHHHHHH
Confidence 112456666665543
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.60 E-value=0.0011 Score=66.82 Aligned_cols=154 Identities=10% Similarity=0.004 Sum_probs=88.1
Q ss_pred CCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEEeCCceeEEEEec
Q 014141 163 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIG 242 (430)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~ 242 (430)
+++|++|+|++..++. +. ..+++|+.|.|.++. ++.+.. -..+|+.|.++++. +..+.-..++|+.|++.+
T Consensus 79 ~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~-l~~ip~--l~~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 79 PPQITVLEITQNALIS--LP---ELPASLEYLDACDNR-LSTLPE--LPASLKHLDVDNNQ-LTMLPELPALLEYINADN 149 (571)
T ss_dssp CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCC-CCCcch--hhcCCCEEECCCCc-CCCCCCcCccccEEeCCC
Confidence 4889999999987763 33 457999999999884 333322 11389999998775 333222567888888887
Q ss_pred ceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCcc-------ceEEEEEeec
Q 014141 243 QDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKL-------MNLNISFTAA 315 (430)
Q Consensus 243 ~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L-------~~L~l~~~~~ 315 (430)
+.+...-...++|+.+.+..+.... +. . +. ++|+.|+++.+. +. .+|....+| +.|+|+.+.
T Consensus 150 N~l~~lp~~l~~L~~L~Ls~N~L~~-lp---~-l~--~~L~~L~Ls~N~-L~--~lp~~~~~L~~~~~~L~~L~Ls~N~- 218 (571)
T 3cvr_A 150 NQLTMLPELPTSLEVLSVRNNQLTF-LP---E-LP--ESLEALDVSTNL-LE--SLPAVPVRNHHSEETEIFFRCRENR- 218 (571)
T ss_dssp SCCSCCCCCCTTCCEEECCSSCCSC-CC---C-CC--TTCCEEECCSSC-CS--SCCCCC--------CCEEEECCSSC-
T ss_pred CccCcCCCcCCCcCEEECCCCCCCC-cc---h-hh--CCCCEEECcCCC-CC--chhhHHHhhhcccccceEEecCCCc-
Confidence 7543212245667777776544321 11 1 11 677777777665 33 222211244 555553321
Q ss_pred CccchhhHHHHHhhCCCceEEEEEE
Q 014141 316 NQETLLGLSFIMKACPFLEKLVLQI 340 (430)
Q Consensus 316 ~~~~~~~l~~lL~~~p~L~~L~l~~ 340 (430)
+..+..-+..+++|+.|++..
T Consensus 219 ----l~~lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 219 ----ITHIPENILSLDPTCTIILED 239 (571)
T ss_dssp ----CCCCCGGGGGSCTTEEEECCS
T ss_pred ----ceecCHHHhcCCCCCEEEeeC
Confidence 112233333467777776644
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=96.53 E-value=0.00043 Score=56.44 Aligned_cols=127 Identities=16% Similarity=0.129 Sum_probs=71.4
Q ss_pred cCCcccceeeccCCCC-ceee-EecCCCCcceEEEeecCCccEEEEeCCceeEEEEecceeeeecCCCCCceEEEEEeec
Q 014141 187 NCPLLENLRITQSPDL-LSLK-VVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTP 264 (430)
Q Consensus 187 ~cp~Le~L~L~~~~~~-~~~~-i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~~~~~~~~~~~~~L~~~~i~~~~ 264 (430)
..++|+.|.+.+|..- ..+. ....+++|+.|.+.++. +..+ -.+..+++|+.+.+..+.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~------------------~~~~~l~~L~~L~Ls~n~ 75 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI------------------ANLPKLNKLKKLELSDNR 75 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC------------------TTCCCCTTCCEEECCSSC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc------------------hhhhcCCCCCEEECCCCc
Confidence 4578999999998532 1221 12345677777776664 2222 113345566666665443
Q ss_pred CcchhhHHHHhhccCCCceEEEEecceeeecc---cccCCCCccceEEEEEeecCccchhh-HHHHHhhCCCceEEEE
Q 014141 265 MVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ---FSQREFPKLMNLNISFTAANQETLLG-LSFIMKACPFLEKLVL 338 (430)
Q Consensus 265 ~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~---~l~~~~~~L~~L~l~~~~~~~~~~~~-l~~lL~~~p~L~~L~l 338 (430)
.... +...+..+++|+.|.+..+. +... .....+++|++|+++...-. .... ....+..+|+|+.|++
T Consensus 76 i~~~---~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 76 VSGG---LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVT--NLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CCSC---THHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGG--GSTTHHHHHHHHCTTCCEETT
T ss_pred ccch---HHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCccc--chHHHHHHHHHHCCCcccccC
Confidence 3221 22445568888888887776 4332 11223777888877443211 1111 1257888899988865
No 120
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.49 E-value=0.0029 Score=59.64 Aligned_cols=58 Identities=14% Similarity=0.049 Sum_probs=31.9
Q ss_pred hhccCCCceEEEEecceeeecccccCC-CCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141 275 IVSYLPQLKTLELDGCNEVFAQFSQRE-FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI 340 (430)
Q Consensus 275 l~~~~~~l~~L~l~~~~~~~~~~l~~~-~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~ 340 (430)
.+.++++|+.|+++.+. +. .+|.. |.+|++|.+... .....+.. +...++|+.+++..
T Consensus 197 ~f~~l~~L~~LdLs~N~-l~--~lp~~~~~~L~~L~~l~~----~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 197 VFHGASGPVILDISRTR-IH--SLPSYGLENLKKLRARST----YNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TTTTEECCSEEECTTSC-CC--CCCSSSCTTCCEEECTTC----TTCCCCCC-TTTCCSCCEEECSC
T ss_pred HhccCcccchhhcCCCC-cC--ccChhhhccchHhhhccC----CCcCcCCC-chhCcChhhCcCCC
Confidence 44666777788877665 32 23333 777777774221 11111221 45677777777743
No 121
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=96.46 E-value=0.012 Score=59.83 Aligned_cols=58 Identities=16% Similarity=0.072 Sum_probs=36.7
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecC
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCY 223 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~ 223 (430)
+++++|+|++..++.- -..-+.++++|+.|+|.+|. ++.+... ..+++|+.|.+.++.
T Consensus 52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC
T ss_pred cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCc
Confidence 4789999988765431 01235678999999998884 3333221 245677777776654
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=96.30 E-value=0.0034 Score=52.68 Aligned_cols=131 Identities=13% Similarity=0.088 Sum_probs=68.6
Q ss_pred hcCCcccceeeccCCCCceee-EecCCCCcceEEEeecCCccEEEEeCCceeEEEEecceeeeecCCCCCceEEEEEeec
Q 014141 186 HNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTP 264 (430)
Q Consensus 186 ~~cp~Le~L~L~~~~~~~~~~-i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~~~~~~~~~~~~~L~~~~i~~~~ 264 (430)
..|+.|+.|.+.++.. +.+. +....++|+.|.+.++. +..+. .+..+++|+.+.+..+.
T Consensus 16 ~~~~~L~~L~l~~n~l-~~i~~~~~~~~~L~~L~Ls~N~-l~~~~------------------~l~~l~~L~~L~Ls~N~ 75 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNE-IRKLD------------------GFPLLRRLKTLLVNNNR 75 (176)
T ss_dssp ECTTSCEEEECTTSCC-CSCCCGGGGTTCCSEEECCSSC-CCEEC------------------CCCCCSSCCEEECCSSC
T ss_pred CCcCCceEEEeeCCCC-chhHHhhhcCCCCCEEECCCCC-CCccc------------------ccccCCCCCEEECCCCc
Confidence 3588999999998843 3221 12222477777777765 33321 12334455555544332
Q ss_pred CcchhhHHHHhhccCCCceEEEEecceeeeccc---ccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEe
Q 014141 265 MVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF---SQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW 341 (430)
Q Consensus 265 ~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~---l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~ 341 (430)
...... .++..+++|+.|.+..+. +.... ....+++|++|++....-... ...-..++..+|+|+.|++...
T Consensus 76 l~~~~~---~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 76 ICRIGE---GLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCEECS---CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEEC
T ss_pred ccccCc---chhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcC
Confidence 211000 234567778888877665 32211 111266777777744321111 0111235778888888887654
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.22 E-value=0.00055 Score=59.31 Aligned_cols=62 Identities=18% Similarity=0.108 Sum_probs=41.3
Q ss_pred CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecC
Q 014141 160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY 223 (430)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~ 223 (430)
+.++++|++|+|.+..++.- ....+..+++|+.|.|.++.. +.+.. -..+++|+.|.+.++.
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~N~ 111 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQ 111 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcC-CccCHhHhcCccCCCEEEcCCCc
Confidence 46789999999998876531 223457889999999988742 22211 1244677777776654
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=96.20 E-value=0.0013 Score=57.92 Aligned_cols=142 Identities=14% Similarity=0.067 Sum_probs=75.7
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEEEeCCceeEEEEe
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYI 241 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~ 241 (430)
++|+.|.|.+..+..- ....+..+++|+.|.|.++.. +.+.. -..+++|+.|.+.++. +..+.-
T Consensus 40 ~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~----------- 105 (229)
T 3e6j_A 40 TNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ-LTVLPS----------- 105 (229)
T ss_dssp TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCT-----------
T ss_pred CCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCc-CCccCh-----------
Confidence 8899999998877542 123356789999999988753 33221 1234667777766654 222110
Q ss_pred cceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeeccc--ccCCCCccceEEEEEee-cCcc
Q 014141 242 GQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNLNISFTA-ANQE 318 (430)
Q Consensus 242 ~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~--l~~~~~~L~~L~l~~~~-~~~~ 318 (430)
..+..+++|+.+.+..+... .+..-+..+++|+.|.+..+. +.... ....+++|++|++.... ....
T Consensus 106 -----~~~~~l~~L~~L~Ls~N~l~----~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 106 -----AVFDRLVHLKELFMCCNKLT----ELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp -----TTTTTCTTCCEEECCSSCCC----SCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred -----hHhCcchhhCeEeccCCccc----ccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 11234455555555433222 111223677888888887765 33211 11226677777774331 1111
Q ss_pred -chhhHHHHHhh
Q 014141 319 -TLLGLSFIMKA 329 (430)
Q Consensus 319 -~~~~l~~lL~~ 329 (430)
+...+..++..
T Consensus 176 ~~~~~l~~~~~~ 187 (229)
T 3e6j_A 176 RDIMYLRNWVAD 187 (229)
T ss_dssp GGGHHHHHHHHH
T ss_pred chhHHHHHHHHh
Confidence 24445555544
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=96.12 E-value=0.0016 Score=57.00 Aligned_cols=144 Identities=10% Similarity=0.062 Sum_probs=70.3
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEEEeCCceeEEEEe
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYI 241 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~ 241 (430)
+.++.|.|.+..++.-.-...+..+++|+.|.|.++. ++.+.. -..+++|+.|.+.++. +..+.
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~------------ 97 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNR-LENVQ------------ 97 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCC------------
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCc-cCccC------------
Confidence 5577888887765442212335677888888887764 222211 1233556666655543 11111
Q ss_pred cceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecc--cccCCCCccceEEEEEee-cCcc
Q 014141 242 GQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ--FSQREFPKLMNLNISFTA-ANQE 318 (430)
Q Consensus 242 ~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~--~l~~~~~~L~~L~l~~~~-~~~~ 318 (430)
+-.+.++++|+.+.+..+...... ...+..+++|+.|.+..+. +... .....+++|++|++.... ....
T Consensus 98 ----~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 98 ----HKMFKGLESLKTLMLRSNRITCVG---NDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp ----GGGGTTCSSCCEEECTTSCCCCBC---TTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred ----HhHhcCCcCCCEEECCCCcCCeEC---HhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 011334455555554433221100 0224566777888776665 3221 111126677777764331 1223
Q ss_pred chhhHHHHHhh
Q 014141 319 TLLGLSFIMKA 329 (430)
Q Consensus 319 ~~~~l~~lL~~ 329 (430)
...++...++.
T Consensus 170 ~l~~l~~~~~~ 180 (220)
T 2v70_A 170 YLAWLGEWLRK 180 (220)
T ss_dssp GGHHHHHHHHH
T ss_pred chHHHHHHHHh
Confidence 44455555553
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.10 E-value=0.0088 Score=55.70 Aligned_cols=93 Identities=12% Similarity=0.193 Sum_probs=47.3
Q ss_pred eeEEEEEEecCCCCCccHhHHHHHHhhcCcEEEEEEcCCCC--CCCceeecccc---ccccCCCC-CCCC--------CC
Q 014141 99 INQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGT--YDNYYEIPQEC---YKNLQSGC-GLSG--------IK 164 (430)
Q Consensus 99 l~~l~l~~~~~~~~~~~v~~wl~~~~~~~v~~L~l~~~~~~--~~~~~~lp~~~---~~~l~~p~-~~~~--------~~ 164 (430)
+..+.+...+.. ..+ .++... ..+++.|++....-. ......+|... +....+|. .|.+ ++
T Consensus 27 l~~L~l~g~i~~---~~~-~~l~~~-l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 27 ITHLTLTGKLNA---EDF-RHLRDE-FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp CSEEEEEEEECH---HHH-HHHHHS-CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred eeEEEEeccccH---HHH-HHHHHh-hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccC
Confidence 788888765432 112 233222 347898888665322 00001122100 01123443 3446 78
Q ss_pred CCceEEEeeEEEcchhH-HHHhhcCCcccceeeccC
Q 014141 165 SLRSLTLCAVNVTGEVV-EFFIHNCPLLENLRITQS 199 (430)
Q Consensus 165 ~L~~L~L~~~~~~~~~l-~~ll~~cp~Le~L~L~~~ 199 (430)
+|++|.|.+ .++. + ...+.+|++|+.|.+.+.
T Consensus 102 ~L~~l~L~~-~i~~--I~~~aF~~~~~L~~l~l~~n 134 (329)
T 3sb4_A 102 TLEKVILSE-KIKN--IEDAAFKGCDNLKICQIRKK 134 (329)
T ss_dssp TCCC-CBCT-TCCE--ECTTTTTTCTTCCEEEBCCS
T ss_pred CCcEEECCc-cccc--hhHHHhhcCcccceEEcCCC
Confidence 888888876 3321 1 123568899998888755
No 127
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.03 E-value=0.00023 Score=61.28 Aligned_cols=149 Identities=15% Similarity=0.111 Sum_probs=74.1
Q ss_pred CCCceEEEeeEEEcch-----hHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEEeCCceeEE
Q 014141 164 KSLRSLTLCAVNVTGE-----VVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSF 238 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~-----~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L 238 (430)
++++.+.+..+.+++. .+...+..++.|+.|.+.++. ++.+..-..+++|+.|.+.++. +..+ |
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~~~~~l~~L~~L~l~~n~-l~~l----~----- 86 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNL-IKKI----E----- 86 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCCCHHHHTTCCEEEEEEEE-ECSC----S-----
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-CccccccccCCCCCEEECCCCC-cccc----c-----
Confidence 4555555555555432 244467789999999998873 2222211233566666666553 1111 0
Q ss_pred EEecceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeeccc---ccCCCCccceEEEEEeec
Q 014141 239 KYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF---SQREFPKLMNLNISFTAA 315 (430)
Q Consensus 239 ~~~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~---l~~~~~~L~~L~l~~~~~ 315 (430)
-.+..+++|+.+.+..+.... .. -+..+++|+.|.+..+. +.... ....+++|++|++....-
T Consensus 87 --------~~~~~~~~L~~L~L~~N~l~~-l~----~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 87 --------NLDAVADTLEELWISYNQIAS-LS----GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp --------SHHHHHHHCSEEEEEEEECCC-HH----HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred --------chhhcCCcCCEEECcCCcCCc-CC----ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 011123445555555433221 11 13445667777776655 32211 112366777777643311
Q ss_pred Ccc-c-----hhhHHHHHhhCCCceEEE
Q 014141 316 NQE-T-----LLGLSFIMKACPFLEKLV 337 (430)
Q Consensus 316 ~~~-~-----~~~l~~lL~~~p~L~~L~ 337 (430)
... . ......++..+|+|+.|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 153 YNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccccccccchHHHHHHHHHhCCCcEEEC
Confidence 000 0 112244577888888775
No 128
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=95.87 E-value=0.0032 Score=55.06 Aligned_cols=145 Identities=11% Similarity=0.021 Sum_probs=73.0
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEEEeCCceeEEEEe
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYI 241 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~ 241 (430)
++|+.|+|.+..++.-. ...+..+++|+.|.|.++.. +.+.. -..+++|+.|.+.++. +..+.-
T Consensus 32 ~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i-~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~----------- 97 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNK-ITELPK----------- 97 (220)
T ss_dssp TTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCC-CEECTTTTTTCSSCCEEECCSSC-CCCCCT-----------
T ss_pred cCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcC-CCcCHHHhhCCcCCCEEECCCCc-CCccCH-----------
Confidence 67888888877654311 12356678888888887742 22211 1233556666655543 221110
Q ss_pred cceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeeccc--ccCCCCccceEEEEEee-cCcc
Q 014141 242 GQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNLNISFTA-ANQE 318 (430)
Q Consensus 242 ~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~--l~~~~~~L~~L~l~~~~-~~~~ 318 (430)
..+.++++|+.+.+..+...... ...+..+++|+.|++..+. +.... ....+++|++|+|.... ....
T Consensus 98 -----~~f~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 98 -----SLFEGLFSLQLLLLNANKINCLR---VDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp -----TTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred -----hHccCCCCCCEEECCCCCCCEeC---HHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence 11234455555555433222110 0234567778888877665 32211 11125677777764331 1124
Q ss_pred chhhHHHHHhhCC
Q 014141 319 TLLGLSFIMKACP 331 (430)
Q Consensus 319 ~~~~l~~lL~~~p 331 (430)
...++...++..+
T Consensus 169 ~l~~l~~~l~~~~ 181 (220)
T 2v9t_B 169 HLKWLADYLHTNP 181 (220)
T ss_dssp GGHHHHHHHHHCC
T ss_pred ccHHHHHHHHhCC
Confidence 5556666666544
No 129
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=95.79 E-value=0.017 Score=58.67 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=67.1
Q ss_pred CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCCccEEE---E-eC
Q 014141 159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIE---I-SA 232 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~l~~i~---i-~~ 232 (430)
.+.++++|++|+|+++.++.- -...+.++++|+.|.|.++. ++.+... ..+++|+.|.+.++. +..+. + ..
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L 147 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHL 147 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTC
T ss_pred HHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcC
Confidence 567889999999998866431 01235688999999999885 4443221 356889999988775 33321 2 34
Q ss_pred CceeEEEEecceee-----eecCCCCCceEEEEEeec
Q 014141 233 PNLLSFKYIGQDIN-----LHVGSLPQLVDVVFHVTP 264 (430)
Q Consensus 233 P~L~~L~~~~~~~~-----~~~~~~~~L~~~~i~~~~ 264 (430)
++|++|++.+..+. ..+..+++|+.+.+..+.
T Consensus 148 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 148 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred cccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 77888887765431 233456777777776543
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=95.67 E-value=0.0039 Score=58.97 Aligned_cols=125 Identities=14% Similarity=0.088 Sum_probs=57.7
Q ss_pred CCCceEEEeeEEEcchhHHHHhh-cCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEEE----eCCcee
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIH-NCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEI----SAPNLL 236 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~-~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~i----~~P~L~ 236 (430)
+.|+.|+|++..++.-.- ..+. ++++|+.|.|.++. ++.+.. -..+++|+.|.+.++. +..+.- ..++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALE 115 (361)
T ss_dssp TTCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCC
Confidence 345666666554433111 1122 55666666666553 222211 1233556666665544 333321 235666
Q ss_pred EEEEecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141 237 SFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 291 (430)
Q Consensus 237 ~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~ 291 (430)
.|.+.+..+. ..+.++++|+.+.+..+........+..-+..+++|+.|++..+.
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 6666655332 124456667766666443321111111111456777777776665
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=95.65 E-value=0.0087 Score=56.29 Aligned_cols=80 Identities=16% Similarity=0.133 Sum_probs=48.7
Q ss_pred CCCceEEEeeEEEcchhHH-HHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCCccEEE----EeCCcee
Q 014141 164 KSLRSLTLCAVNVTGEVVE-FFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIE----ISAPNLL 236 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~-~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~l~~i~----i~~P~L~ 236 (430)
++|++|+|.+..++. +. ..++++++|+.|.|.++...+.+... ..++++..+.+..+..+..+. -..++|+
T Consensus 30 ~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 30 RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp TTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 678888888776542 21 23567788888888887654443221 234566666655555555553 1347788
Q ss_pred EEEEeccee
Q 014141 237 SFKYIGQDI 245 (430)
Q Consensus 237 ~L~~~~~~~ 245 (430)
+|.+.+..+
T Consensus 108 ~L~l~~n~l 116 (350)
T 4ay9_X 108 YLLISNTGI 116 (350)
T ss_dssp EEEEEEECC
T ss_pred ccccccccc
Confidence 888776643
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.51 E-value=0.0023 Score=64.63 Aligned_cols=102 Identities=19% Similarity=0.254 Sum_probs=52.4
Q ss_pred CCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCcee-eEecCCCCcceEEEeecCCccEEEEeCCceeEEEEecc
Q 014141 165 SLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQ 243 (430)
Q Consensus 165 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~-~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~~ 243 (430)
.|+.|+|++..++. +.. +..+++|+.|.|.++.- +.+ ..-..+++|+.|.++++. +..+
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~-l~~l--------------- 501 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNA-LENV--------------- 501 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSC-CCCC---------------
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCcccc-cccchhhhcCCCCCEEECCCCC-CCCC---------------
Confidence 47777777766643 233 56677777777777642 221 111234555666555543 1111
Q ss_pred eeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141 244 DINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 291 (430)
Q Consensus 244 ~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~ 291 (430)
+ .++.+++|+.+.++.+...... ....+..+++|+.|.+.++.
T Consensus 502 --p-~l~~l~~L~~L~Ls~N~l~~~~--~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 502 --D-GVANLPRLQELLLCNNRLQQSA--AIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp --G-GGTTCSSCCEEECCSSCCCSSS--TTGGGGGCTTCCEEECTTSG
T ss_pred --c-ccCCCCCCcEEECCCCCCCCCC--CcHHHhcCCCCCEEEecCCc
Confidence 1 2344555555555533322110 01334567777777777665
No 133
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.27 E-value=0.003 Score=53.69 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=14.2
Q ss_pred hHHHHhhcCCcccceeeccC
Q 014141 180 VVEFFIHNCPLLENLRITQS 199 (430)
Q Consensus 180 ~l~~ll~~cp~Le~L~L~~~ 199 (430)
.+..++..++.|++|.|.+|
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n 46 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNI 46 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTC
T ss_pred HHHHHHhcCCCCCEEEecCC
Confidence 45666677777777777776
No 134
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.27 E-value=0.17 Score=47.61 Aligned_cols=11 Identities=0% Similarity=-0.082 Sum_probs=6.7
Q ss_pred CCceeEEEEec
Q 014141 232 APNLLSFKYIG 242 (430)
Q Consensus 232 ~P~L~~L~~~~ 242 (430)
.|+|+.|.+.+
T Consensus 138 l~~L~~L~l~~ 148 (362)
T 2ra8_A 138 FAHFEGLFWGD 148 (362)
T ss_dssp HTTCSEEEECC
T ss_pred cchhhheeecC
Confidence 35677776643
No 135
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=95.14 E-value=0.023 Score=49.75 Aligned_cols=126 Identities=17% Similarity=0.107 Sum_probs=67.9
Q ss_pred cCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeeccc--ccCCCCccceEEEEEeecCccchhhHHHH
Q 014141 249 VGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNLNISFTAANQETLLGLSFI 326 (430)
Q Consensus 249 ~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~l~~l 326 (430)
+.++++|+.+.+..+...... ...+..+++|+.|++..+. +.... ....+++|++|+|.... +..+..-
T Consensus 60 ~~~l~~L~~L~L~~N~l~~i~---~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-----l~~lp~~ 130 (229)
T 3e6j_A 60 FDSLINLKELYLGSNQLGALP---VGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK-----LTELPRG 130 (229)
T ss_dssp TTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-----CCSCCTT
T ss_pred hhCccCCcEEECCCCCCCCcC---hhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCc-----ccccCcc
Confidence 345566666666543321100 0345677888888887776 43211 11226777887774432 2233344
Q ss_pred HhhCCCceEEEEEEeccccccccCcccc-c-cCcCCCccEEEEee--eecChhhHH-HHHHHHhccccc
Q 014141 327 MKACPFLEKLVLQIWNNGRRIGKKRHQI-S-KHSHQHLKLVELQG--FNGREIDFE-LAFYVFENATML 390 (430)
Q Consensus 327 L~~~p~L~~L~l~~~~~~~~~~~~~~~~-~-~~~~~~L~~v~i~~--~~g~~~e~~-l~~~ll~~a~~L 390 (430)
+..+++|+.|++....- . ..+ . -..+++|+.+.+.+ +.+...++. +..++..+...+
T Consensus 131 ~~~l~~L~~L~L~~N~l----~---~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~ 192 (229)
T 3e6j_A 131 IERLTHLTHLALDQNQL----K---SIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIA 192 (229)
T ss_dssp GGGCTTCSEEECCSSCC----C---CCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGE
T ss_pred cccCCCCCEEECCCCcC----C---ccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCcccc
Confidence 57889999998854321 1 111 1 12457888888876 444443344 444555555444
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=95.01 E-value=0.0017 Score=61.85 Aligned_cols=36 Identities=8% Similarity=0.117 Sum_probs=22.2
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccC
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQS 199 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~ 199 (430)
++|++|+|+++.+++..+..+...+++|+.|+|.+|
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence 466666666666655555555555566666666666
No 137
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=94.81 E-value=0.05 Score=47.27 Aligned_cols=87 Identities=13% Similarity=0.030 Sum_probs=52.5
Q ss_pred cCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeeccc--ccCCCCccceEEEEEeecCccchhhHHHH
Q 014141 249 VGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNLNISFTAANQETLLGLSFI 326 (430)
Q Consensus 249 ~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~l~~l 326 (430)
+.++++|+.+.+..+...... ...+.++++|+.|.+..+. +.... ....+++|++|+|....-.... ...
T Consensus 76 ~~~l~~L~~L~Ls~N~l~~l~---~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~ 147 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGNKITELP---KSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIA----KGT 147 (220)
T ss_dssp TTTCSSCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCC----TTT
T ss_pred hhCCcCCCEEECCCCcCCccC---HhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEEC----HHH
Confidence 445667777776644332110 0446788999999998876 43221 1112678888888554222111 134
Q ss_pred HhhCCCceEEEEEEecc
Q 014141 327 MKACPFLEKLVLQIWNN 343 (430)
Q Consensus 327 L~~~p~L~~L~l~~~~~ 343 (430)
+..+++|+.|++...+.
T Consensus 148 ~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTTCTTCCEEECCSSCE
T ss_pred HhCCCCCCEEEeCCCCc
Confidence 66789999999976543
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=94.47 E-value=0.018 Score=49.01 Aligned_cols=59 Identities=10% Similarity=0.037 Sum_probs=35.1
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecC
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY 223 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~ 223 (430)
++|+.|.|.+..++.-.-..++...++|+.|.|.++.. +.+.. -..+++|+.|.+.+..
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCC-CCcCHhHcCCcccCCEEECCCCc
Confidence 47888888887665422222456778888888887742 22211 1234667777766654
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=94.34 E-value=0.018 Score=58.02 Aligned_cols=151 Identities=15% Similarity=0.138 Sum_probs=85.6
Q ss_pred CCCCCCCCceEE-EeeEEEcc--------hhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE
Q 014141 159 GLSGIKSLRSLT-LCAVNVTG--------EVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE 229 (430)
Q Consensus 159 ~~~~~~~L~~L~-L~~~~~~~--------~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~ 229 (430)
.+.++++|+.|+ +....+.+ ..+..+- ...|+.|.|.++. ++.+.--..+++|+.|.++++. +..
T Consensus 404 ~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~--~~~L~~L~Ls~n~-l~~lp~~~~l~~L~~L~Ls~N~-l~~-- 477 (567)
T 1dce_A 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME--YADVRVLHLAHKD-LTVLCHLEQLLLVTHLDLSHNR-LRA-- 477 (567)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH--HTTCSEEECTTSC-CSSCCCGGGGTTCCEEECCSSC-CCC--
T ss_pred HHHHHHhcccCcchhhcccchhhhhhhhcccccccC--ccCceEEEecCCC-CCCCcCccccccCcEeecCccc-ccc--
Confidence 345678888887 44332211 1122221 2468999999884 3322112334566666666554 111
Q ss_pred EeCCceeEEEEecceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCC---CCccc
Q 014141 230 ISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLM 306 (430)
Q Consensus 230 i~~P~L~~L~~~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~---~~~L~ 306 (430)
++-.++++++|+.+.++.+.... + .-+..+++|+.|.++.+. +.....|.. +++|+
T Consensus 478 ---------------lp~~~~~l~~L~~L~Ls~N~l~~-l----p~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 478 ---------------LPPALAALRCLEVLQASDNALEN-V----DGVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp ---------------CCGGGGGCTTCCEEECCSSCCCC-C----GGGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCC
T ss_pred ---------------cchhhhcCCCCCEEECCCCCCCC-C----cccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCC
Confidence 11234566777777776544332 1 235788999999998886 443321332 78888
Q ss_pred eEEEEEeecCccchhhHHHHHhhCCCceEEE
Q 014141 307 NLNISFTAANQETLLGLSFIMKACPFLEKLV 337 (430)
Q Consensus 307 ~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~ 337 (430)
.|+|+...-.. .......++..+|+|+.|.
T Consensus 537 ~L~L~~N~l~~-~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 537 LLNLQGNSLCQ-EEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp EEECTTSGGGG-SSSCTTHHHHHCTTCSEEE
T ss_pred EEEecCCcCCC-CccHHHHHHHHCcccCccC
Confidence 88885432111 1112456778899999985
No 140
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.85 E-value=0.027 Score=47.62 Aligned_cols=122 Identities=19% Similarity=0.188 Sum_probs=75.1
Q ss_pred HHHhhccCCCceEEEEecc-eeeeccc---c---cCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEeccc
Q 014141 272 IGSIVSYLPQLKTLELDGC-NEVFAQF---S---QREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNG 344 (430)
Q Consensus 272 ~~~l~~~~~~l~~L~l~~~-~~~~~~~---l---~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~ 344 (430)
+...+...++|+.|.+..+ . +.... + ....++|++|+|+...-+......+...+...++|++|+|....
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~-i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-- 104 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMN-IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-- 104 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTT-CCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC--
T ss_pred HHHHHhcCCCCCEEEecCCCC-CCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc--
Confidence 3467788888999998776 4 33211 1 11256888888866544434455678888999999999985432
Q ss_pred cccccCcccc--c-cCcCCCccEEEE--eeee-cChhhHHHHHHHHhcccccccEEEecCC
Q 014141 345 RRIGKKRHQI--S-KHSHQHLKLVEL--QGFN-GREIDFELAFYVFENATMLEKMIIKPSG 399 (430)
Q Consensus 345 ~~~~~~~~~~--~-~~~~~~L~~v~i--~~~~-g~~~e~~l~~~ll~~a~~Le~m~i~~~~ 399 (430)
..+.+... . -....+|+.+.+ .+-. |.+.-..+++ .++..+.|+++.+....
T Consensus 105 --i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 105 --ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp --CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSS
T ss_pred --CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCC
Confidence 22222111 1 123567999999 4433 3333344554 55566889999986553
No 141
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=93.35 E-value=0.019 Score=50.05 Aligned_cols=81 Identities=12% Similarity=0.104 Sum_probs=48.5
Q ss_pred CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEE----EeCC
Q 014141 160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIE----ISAP 233 (430)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~----i~~P 233 (430)
+.++++|++|+|.+..++.-. ...+.++++|+.|.|.++.. +.+.. -..+++|+.|.+.++. +..+. ...+
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~ 129 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRL-ENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLS 129 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC-CCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCT
T ss_pred hccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCcc-CccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCc
Confidence 467899999999888665311 12356789999999988753 22111 1245677777777654 22221 1235
Q ss_pred ceeEEEEecc
Q 014141 234 NLLSFKYIGQ 243 (430)
Q Consensus 234 ~L~~L~~~~~ 243 (430)
+|+.|++.+.
T Consensus 130 ~L~~L~L~~N 139 (220)
T 2v70_A 130 SVRLLSLYDN 139 (220)
T ss_dssp TCSEEECTTS
T ss_pred cCCEEECCCC
Confidence 5666655554
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=93.04 E-value=0.029 Score=47.77 Aligned_cols=106 Identities=15% Similarity=0.090 Sum_probs=59.6
Q ss_pred CCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEEEeCCceeEEEE
Q 014141 163 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKY 240 (430)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~ 240 (430)
+++|+.|.|.+..++. +...+.++++|+.|.|.++.. +.+.. -..+++|+.|.+.+.. +..+.-
T Consensus 30 ~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~---------- 95 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNR-LRCIPP---------- 95 (193)
T ss_dssp CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCBCCT----------
T ss_pred CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcC-CEeCHhHccCCCCCCEEECCCCc-cCEeCH----------
Confidence 3689999999887753 334567889999999988743 22211 1234566666666543 222110
Q ss_pred ecceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141 241 IGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 291 (430)
Q Consensus 241 ~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~ 291 (430)
..+.++++|+.+.+..+....... ..+..+++|+.|.+..++
T Consensus 96 ------~~f~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 96 ------RTFDGLKSLRLLSLHGNDISVVPE---GAFNDLSALSHLAIGANP 137 (193)
T ss_dssp ------TTTTTCTTCCEEECCSSCCCBCCT---TTTTTCTTCCEEECCSSC
T ss_pred ------HHhCCCCCCCEEECCCCCCCeeCh---hhhhcCccccEEEeCCCC
Confidence 123345555555555333221000 334567788888887766
No 143
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=92.60 E-value=0.13 Score=48.31 Aligned_cols=143 Identities=17% Similarity=0.159 Sum_probs=82.2
Q ss_pred CCcccceeeccCCCCceeeEe--c-CCCCcceEEEeecCCccEEEE----eCCceeEEEEecceeee----ecCCCCCce
Q 014141 188 CPLLENLRITQSPDLLSLKVV--G-SSIPLKCLDIQFCYSIKEIEI----SAPNLLSFKYIGQDINL----HVGSLPQLV 256 (430)
Q Consensus 188 cp~Le~L~L~~~~~~~~~~i~--~-~~~~L~~L~l~~c~~l~~i~i----~~P~L~~L~~~~~~~~~----~~~~~~~L~ 256 (430)
.+.++.|.|.++. ++.+... . .+++|+.|.+.++. +..+.- ..++|+.|++.+..+.. .+.++++|+
T Consensus 38 ~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 38 PSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115 (361)
T ss_dssp CTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence 3558899998874 3333221 1 45889999998775 555431 34788888888775432 345677888
Q ss_pred EEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecc---ccc--CCCCccceEEEEEeecCccchhhHHHHHhhCC
Q 014141 257 DVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ---FSQ--REFPKLMNLNISFTAANQETLLGLSFIMKACP 331 (430)
Q Consensus 257 ~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~---~l~--~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p 331 (430)
.+.+..+...... ...+..+++|+.|.+..+. +... .+. ..+++|++|+|+...-.... ...+...|
T Consensus 116 ~L~L~~N~i~~~~---~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~l~ 187 (361)
T 2xot_A 116 VLLLYNNHIVVVD---RNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP----LTDLQKLP 187 (361)
T ss_dssp EEECCSSCCCEEC---TTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCC----HHHHHHSC
T ss_pred EEECCCCcccEEC---HHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccC----HHHhhhcc
Confidence 8887754433111 1345677888888887766 3321 111 12667777777543221111 13444555
Q ss_pred C--ceEEEEEE
Q 014141 332 F--LEKLVLQI 340 (430)
Q Consensus 332 ~--L~~L~l~~ 340 (430)
. |+.|.++.
T Consensus 188 ~~~l~~l~l~~ 198 (361)
T 2xot_A 188 AWVKNGLYLHN 198 (361)
T ss_dssp HHHHTTEECCS
T ss_pred HhhcceEEecC
Confidence 4 35666654
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=92.58 E-value=0.032 Score=46.56 Aligned_cols=59 Identities=17% Similarity=0.035 Sum_probs=34.7
Q ss_pred CCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecC
Q 014141 163 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY 223 (430)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~ 223 (430)
+++|+.|+|.+..+..- ....+..+++|+.|.+.++.- +.+.. -..+++|+.|.+.++.
T Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcc-eEeChhHccCCCccCEEECCCCC
Confidence 37788888887766531 122356778888888887742 22211 1234566666666543
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=91.77 E-value=0.027 Score=58.54 Aligned_cols=104 Identities=15% Similarity=0.170 Sum_probs=64.8
Q ss_pred CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE-ecCCCCcceEEEeecCCccEEE---EeCCc
Q 014141 159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV-VGSSIPLKCLDIQFCYSIKEIE---ISAPN 234 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i-~~~~~~L~~L~l~~c~~l~~i~---i~~P~ 234 (430)
.+..+++|+.|+|.+..+.. +..-+..++.|+.|.|.++..- .+.- -..+++|+.|.++++. +..+. -..++
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQ 294 (727)
T ss_dssp ---CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTT
T ss_pred hhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCC
Confidence 45577888888888876652 2222337888888888877432 2211 1245778888887765 33331 13467
Q ss_pred eeEEEEeccee---eeecCCCCCceEEEEEeecCc
Q 014141 235 LLSFKYIGQDI---NLHVGSLPQLVDVVFHVTPMV 266 (430)
Q Consensus 235 L~~L~~~~~~~---~~~~~~~~~L~~~~i~~~~~~ 266 (430)
|++|.+.+..+ +..++.+++|+.+.+..+...
T Consensus 295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 88888877643 334667888888888766554
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=91.74 E-value=0.043 Score=45.70 Aligned_cols=63 Identities=16% Similarity=0.093 Sum_probs=41.4
Q ss_pred CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecC
Q 014141 159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY 223 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~ 223 (430)
.+.++++|++|+|.+..++.- ....+..+++|+.|.|.++.. +.+.. -..+++|+.|.+.++.
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~ 111 (177)
T 2o6r_A 47 VFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKL-QSLPNGVFDKLTQLKELALDTNQ 111 (177)
T ss_dssp TTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred HhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCc-cccCHHHhhCCcccCEEECcCCc
Confidence 346789999999998877531 123457899999999998743 22211 1234667777766554
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=91.05 E-value=0.044 Score=46.61 Aligned_cols=65 Identities=15% Similarity=0.045 Sum_probs=42.1
Q ss_pred CCCCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecC
Q 014141 157 GCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY 223 (430)
Q Consensus 157 p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~ 223 (430)
|..+.++++|+.|+|++..++.- ....+.++++|+.|.|.++.. +.+.. -..+++|+.|.+.+..
T Consensus 47 p~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~l-~~i~~~~f~~l~~L~~L~L~~N~ 113 (193)
T 2wfh_A 47 PKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRL-RCIPPRTFDGLKSLRLLSLHGND 113 (193)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECCSSC
T ss_pred HHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCcc-CEeCHHHhCCCCCCCEEECCCCC
Confidence 34556889999999998877642 122356889999999998752 22211 1234667777766554
No 148
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=89.65 E-value=0.056 Score=56.13 Aligned_cols=104 Identities=15% Similarity=0.056 Sum_probs=67.5
Q ss_pred HHHhhcCCcccceeeccCCCCceee-EecCCCCcceEEEeecCCccEEE---EeCCceeEEEEeccee---eeecCCCCC
Q 014141 182 EFFIHNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFCYSIKEIE---ISAPNLLSFKYIGQDI---NLHVGSLPQ 254 (430)
Q Consensus 182 ~~ll~~cp~Le~L~L~~~~~~~~~~-i~~~~~~L~~L~l~~c~~l~~i~---i~~P~L~~L~~~~~~~---~~~~~~~~~ 254 (430)
...+..++.|+.|.|.++... .+. -...+++|+.|.+.++. +..+. -..++|+.|++.+..+ +-.++++++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 345678899999999998643 221 11245889999998875 44332 1457899999987754 334567788
Q ss_pred ceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141 255 LVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 291 (430)
Q Consensus 255 L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~ 291 (430)
|+.+.+..+... .+..-+..+++|+.|.|..+.
T Consensus 295 L~~L~L~~N~l~----~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 295 LKYFYFFDNMVT----TLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CSEEECCSSCCC----CCCSSTTSCTTCCCEECTTSC
T ss_pred CCEEECCCCCCC----ccChhhhcCCCccEEeCCCCc
Confidence 998888755432 112235778899999987765
No 149
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=89.58 E-value=0.14 Score=43.35 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=42.2
Q ss_pred CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecC
Q 014141 160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY 223 (430)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~ 223 (430)
+..+++|++|+|.+..++.- ....+.+.+.|+.|.|.++.. +.+.. -..+++|+.|.+.+..
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKI-KEISNKMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCC-CEECSSSSTTCTTCCEEECCSSC
T ss_pred cccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCcC-CccCHHHhcCCCCCCEEECCCCc
Confidence 56889999999999877642 123467889999999998853 32221 1234667777776654
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=88.34 E-value=0.9 Score=43.31 Aligned_cols=156 Identities=12% Similarity=0.149 Sum_probs=69.2
Q ss_pred CCceEEEeeE--EEcchhHHHHhhcCCcccceeeccCCCCceeeEec-CCCCcceEEEeecCCccEEEE----eCCceeE
Q 014141 165 SLRSLTLCAV--NVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVG-SSIPLKCLDIQFCYSIKEIEI----SAPNLLS 237 (430)
Q Consensus 165 ~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~-~~~~L~~L~l~~c~~l~~i~i----~~P~L~~ 237 (430)
+|+.+.|..- .+.+ ..+.+|++|+.+.+.+.. ++.+.-.+ .+.+|+.+.+.+ .+..|.- .+++|+.
T Consensus 158 ~L~~i~lp~~l~~I~~----~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~ 230 (401)
T 4fdw_A 158 TVQEIVFPSTLEQLKE----DIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKT 230 (401)
T ss_dssp CCCEEECCTTCCEECS----STTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCC
T ss_pred CceEEEeCCCccEehH----HHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCE
Confidence 5666666531 2222 235678888888876431 11111110 124555555431 1222221 2345555
Q ss_pred EEEecceee---eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeee---cccccC----CCCccce
Q 014141 238 FKYIGQDIN---LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVF---AQFSQR----EFPKLMN 307 (430)
Q Consensus 238 L~~~~~~~~---~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~---~~~l~~----~~~~L~~ 307 (430)
+.+.+.... ..+.+ ..|+.+.+.- ....++. .-+.+|++|+.+.+.... .. ...++. .+++|+.
T Consensus 231 l~l~~~l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~--~aF~~c~~L~~l~l~~~~-~~~~~~~~I~~~aF~~c~~L~~ 304 (401)
T 4fdw_A 231 IEIPENVSTIGQEAFRE-SGITTVKLPN--GVTNIAS--RAFYYCPELAEVTTYGST-FNDDPEAMIHPYCLEGCPKLAR 304 (401)
T ss_dssp EECCTTCCEECTTTTTT-CCCSEEEEET--TCCEECT--TTTTTCTTCCEEEEESSC-CCCCTTCEECTTTTTTCTTCCE
T ss_pred EecCCCccCcccccccc-CCccEEEeCC--CccEECh--hHhhCCCCCCEEEeCCcc-ccCCcccEECHHHhhCCccCCe
Confidence 555432111 11222 4566666531 1111100 345677788888776543 11 001222 1556666
Q ss_pred EEEEEeecCccchhhHHHHHhhCCCceEEEE
Q 014141 308 LNISFTAANQETLLGLSFIMKACPFLEKLVL 338 (430)
Q Consensus 308 L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l 338 (430)
+.|.-. - .... ...+..|++|+.+.|
T Consensus 305 l~l~~~--i-~~I~--~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 305 FEIPES--I-RILG--QGLLGGNRKVTQLTI 330 (401)
T ss_dssp ECCCTT--C-CEEC--TTTTTTCCSCCEEEE
T ss_pred EEeCCc--e-EEEh--hhhhcCCCCccEEEE
Confidence 665210 0 0110 134567888888877
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=87.07 E-value=0.17 Score=42.00 Aligned_cols=57 Identities=16% Similarity=0.057 Sum_probs=35.0
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeec
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFC 222 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c 222 (430)
++|+.|+|.+..+..- ....+.++++|+.|.|.++. ++.+... ..+++|+.|.+.+.
T Consensus 33 ~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC
Confidence 7888888888876531 12345678888888888774 3322111 23456666666554
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=85.59 E-value=0.26 Score=40.64 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=35.3
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCCccEEE---E-eCCceeE
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIE---I-SAPNLLS 237 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~l~~i~---i-~~P~L~~ 237 (430)
++|+.|+|.+..++.-. ...+.++++|+.|.|.++. ++.+... ..+++|+.|.+.+.. +..+. + ..++|+.
T Consensus 30 ~~l~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~ 106 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLE-PGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTH 106 (170)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCcCCccC-hhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCE
Confidence 55555555555443210 1123445556666655553 2221111 133555555555443 22221 1 2356777
Q ss_pred EEEecce
Q 014141 238 FKYIGQD 244 (430)
Q Consensus 238 L~~~~~~ 244 (430)
|.+.+..
T Consensus 107 L~L~~N~ 113 (170)
T 3g39_A 107 IWLLNNP 113 (170)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 7766653
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=84.18 E-value=0.35 Score=40.09 Aligned_cols=42 Identities=12% Similarity=0.098 Sum_probs=32.3
Q ss_pred CCCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCC
Q 014141 158 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP 200 (430)
Q Consensus 158 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~ 200 (430)
..+.++++|+.|+|.+..++.- -..++..+++|+.|.|.++.
T Consensus 51 ~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 51 GVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred HHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCc
Confidence 3567899999999999877641 12245788999999999874
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=83.28 E-value=1.1 Score=41.29 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=50.3
Q ss_pred CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCCccEEEEeCCceeEEEEe
Q 014141 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYI 241 (430)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~ 241 (430)
.+++.+.+.+. +...++..+...|++|+.|.|.++. ++.+.-. ..|.+|+.+.+.+- +..|.
T Consensus 202 ~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~------------ 265 (329)
T 3sb4_A 202 RDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIG------------ 265 (329)
T ss_dssp GGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEEC------------
T ss_pred cccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceeh------------
Confidence 34444545443 2233455555568999999988753 3322211 13445555554321 22211
Q ss_pred cceeeeecCCCCCce-EEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141 242 GQDINLHVGSLPQLV-DVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 291 (430)
Q Consensus 242 ~~~~~~~~~~~~~L~-~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~ 291 (430)
...+.++++|+ .+.+.. ....++. .-+.+|++|+.+.+....
T Consensus 266 ----~~aF~~~~~L~~~l~l~~--~l~~I~~--~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 266 ----QRVFSNCGRLAGTLELPA--SVTAIEF--GAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp ----TTTTTTCTTCCEEEEECT--TCCEECT--TTTTTCTTEEEEEECSSC
T ss_pred ----HHHhhCChhccEEEEEcc--cceEEch--hhhhCCccCCEEEeCCCc
Confidence 11244555565 555542 1100110 445677788888775443
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=82.68 E-value=0.38 Score=44.67 Aligned_cols=65 Identities=20% Similarity=0.092 Sum_probs=37.9
Q ss_pred CCCCCCCCCCCceEEEee-EEEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecC
Q 014141 156 SGCGLSGIKSLRSLTLCA-VNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCY 223 (430)
Q Consensus 156 ~p~~~~~~~~L~~L~L~~-~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~ 223 (430)
+|. +..+++|+.|+|.+ ..+..- ....+.++++|+.|.|.++. ++.+... ..+++|+.|.+.+..
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCc
Confidence 455 56777788888875 544321 11235677888888887774 3332211 245677777776654
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=82.43 E-value=3.1 Score=39.50 Aligned_cols=167 Identities=11% Similarity=0.032 Sum_probs=89.5
Q ss_pred CCCCCCCCceEEEeeE---EEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCCccEEEE---
Q 014141 159 GLSGIKSLRSLTLCAV---NVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIEI--- 230 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~---~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~l~~i~i--- 230 (430)
.|.+|++|+.+.|.+. .+.+..+. |..|+.+.|... ++.+.-. ..|++|+.+.+.. ++..+.-
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~-----~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF 245 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFV-----YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAF 245 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTT-----TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT--TCCEECTTTT
T ss_pred HhhCcccCCeeecCCCcceEechhhEe-----ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC--CccCcccccc
Confidence 5668899999999753 33333332 678888888632 3332222 1456677777643 1222221
Q ss_pred eCCceeEEEEeccee---eeecCCCCCceEEEEEeecCc-chhhHHH-HhhccCCCceEEEEeccee-eecccccCCCCc
Q 014141 231 SAPNLLSFKYIGQDI---NLHVGSLPQLVDVVFHVTPMV-QKMHCIG-SIVSYLPQLKTLELDGCNE-VFAQFSQREFPK 304 (430)
Q Consensus 231 ~~P~L~~L~~~~~~~---~~~~~~~~~L~~~~i~~~~~~-~~~~~~~-~l~~~~~~l~~L~l~~~~~-~~~~~l~~~~~~ 304 (430)
...+|+.+.+..... ...+.++++|+.+.+.-.... .....+. ..+.+|++|+.+.+...-. +.. ..-..+.+
T Consensus 246 ~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~-~aF~~c~~ 324 (401)
T 4fdw_A 246 RESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQ-GLLGGNRK 324 (401)
T ss_dssp TTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECT-TTTTTCCS
T ss_pred ccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhh-hhhcCCCC
Confidence 114677777754322 234567888888887632211 0000011 4567888999988864321 111 11112567
Q ss_pred cceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEe
Q 014141 305 LMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW 341 (430)
Q Consensus 305 L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~ 341 (430)
|+.+.|.-. . .... ...+..| +|++|.+...
T Consensus 325 L~~l~lp~~--l-~~I~--~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 325 VTQLTIPAN--V-TQIN--FSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CCEEEECTT--C-CEEC--TTSSSSS-CCCEEEECCS
T ss_pred ccEEEECcc--c-cEEc--HHhCCCC-CCCEEEEcCC
Confidence 777777221 0 1110 1345678 9999988553
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=81.23 E-value=1.2 Score=37.66 Aligned_cols=123 Identities=14% Similarity=0.131 Sum_probs=78.4
Q ss_pred HHHhhccCCCceEEEEecceeeeccc---cc---CCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEecccc
Q 014141 272 IGSIVSYLPQLKTLELDGCNEVFAQF---SQ---REFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGR 345 (430)
Q Consensus 272 ~~~l~~~~~~l~~L~l~~~~~~~~~~---l~---~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~ 345 (430)
+..++.+-+.|+.|.|.....+.... +. ..=..|++|+|..+.-++.....+...|+.-..|++|.|....
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~--- 109 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF--- 109 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB---
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc---
Confidence 33666777888888886541122111 10 1145688888866555555566789999999999999995431
Q ss_pred ccccCccccc---cCcCCCccEEEEee----eecChhhHHHHHHHHhcccccccEEEecCC
Q 014141 346 RIGKKRHQIS---KHSHQHLKLVELQG----FNGREIDFELAFYVFENATMLEKMIIKPSG 399 (430)
Q Consensus 346 ~~~~~~~~~~---~~~~~~L~~v~i~~----~~g~~~e~~l~~~ll~~a~~Le~m~i~~~~ 399 (430)
.++.|.... -.....|+.+.+.+ .-|......+++.+-.| +.|.++.+.+..
T Consensus 110 -Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N-~tL~~L~l~~~~ 168 (197)
T 1pgv_A 110 -LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISFAS 168 (197)
T ss_dssp -CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCCCC
T ss_pred -CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhC-CCcCeEeccCCC
Confidence 233332111 12345699999974 33667777888877666 678888887554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=80.77 E-value=0.34 Score=43.39 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=24.4
Q ss_pred CCCCCceEEEeeEEEcc-hhHHHHhhcCCcccceeeccC
Q 014141 162 GIKSLRSLTLCAVNVTG-EVVEFFIHNCPLLENLRITQS 199 (430)
Q Consensus 162 ~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~L~~~ 199 (430)
++|+|++|+|++..+++ ..+..++..+|+|+.|.|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC
Confidence 45677777777776654 334455566777777777655
No 159
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=80.00 E-value=2 Score=35.12 Aligned_cols=81 Identities=17% Similarity=0.117 Sum_probs=41.4
Q ss_pred cCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeeccc--ccCCCCccceEEEEEeec-Ccc-chhhHH
Q 014141 249 VGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNLNISFTAA-NQE-TLLGLS 324 (430)
Q Consensus 249 ~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~--l~~~~~~L~~L~l~~~~~-~~~-~~~~l~ 324 (430)
+.++++|+.+.+..+....... ..+..+++|+.|.+..+. +.... ....+++|++|+|....- ... +...+.
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~l~~---~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~ 125 (170)
T 3g39_A 50 FDRLTQLTRLDLDNNQLTVLPA---GVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLS 125 (170)
T ss_dssp TTTCTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHH
T ss_pred hcCcccCCEEECCCCCcCccCh---hhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHH
Confidence 4456666666666443221100 334677788888887765 33211 111256777777644311 111 344566
Q ss_pred HHHhhCCCc
Q 014141 325 FIMKACPFL 333 (430)
Q Consensus 325 ~lL~~~p~L 333 (430)
..++..+.+
T Consensus 126 ~~l~~~~~~ 134 (170)
T 3g39_A 126 RWISQHPGL 134 (170)
T ss_dssp HHHHHCGGG
T ss_pred HHHHhCcce
Confidence 666666654
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=72.45 E-value=1.3 Score=39.49 Aligned_cols=63 Identities=27% Similarity=0.221 Sum_probs=33.8
Q ss_pred HhhccCCCceEEEEecceeeecccccCCCC--ccceEEEEEeecCc-c--chhhHHHHHhhCCCceEEE
Q 014141 274 SIVSYLPQLKTLELDGCNEVFAQFSQREFP--KLMNLNISFTAANQ-E--TLLGLSFIMKACPFLEKLV 337 (430)
Q Consensus 274 ~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~--~L~~L~l~~~~~~~-~--~~~~l~~lL~~~p~L~~L~ 337 (430)
.++..+++|+.|.|+.+. +....-...+. +|++|.|....... . .......++..+|+|+.|+
T Consensus 190 ~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 190 SIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp THHHHSTTCCEEECTTSC-CCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hHHhhCCCCCEEECCCCc-cCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 344567778888876665 33221111122 67777764322110 0 1122346888999998884
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=64.16 E-value=2 Score=39.61 Aligned_cols=63 Identities=22% Similarity=0.174 Sum_probs=40.7
Q ss_pred CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEec-CCCCcceEEEeecC
Q 014141 159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVG-SSIPLKCLDIQFCY 223 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~-~~~~L~~L~l~~c~ 223 (430)
.+.++++|+.|+|++..++.- ....+.++++|+.|.|.+..- +.+.... ...+|+.|.+.+..
T Consensus 51 ~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 51 DLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp GSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSCC-SCCCSTTTCSCCCCEEECCSSC
T ss_pred HhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCcc-ceeCHHHcccCCceEEEeeCCC
Confidence 356889999999998876541 123467899999999998742 2221110 11238888886543
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=51.05 E-value=8.1 Score=36.27 Aligned_cols=92 Identities=13% Similarity=0.143 Sum_probs=43.7
Q ss_pred hhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCCccEEEE----eCCceeEEEEecceee---eecCCCCCc
Q 014141 185 IHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIEI----SAPNLLSFKYIGQDIN---LHVGSLPQL 255 (430)
Q Consensus 185 l~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~l~~i~i----~~P~L~~L~~~~~~~~---~~~~~~~~L 255 (430)
+.+|..|+.+.+... ++.+.-. ..|.+|+.+.+.+ .+..|.- .+.+|+++.+...... ..+.++++|
T Consensus 293 F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINL 368 (394)
T ss_dssp TTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTC
T ss_pred ccccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCC
Confidence 446677776666421 1211111 1345555555421 1222221 2355666655433211 246688899
Q ss_pred eEEEEEeecCcchhhHHHHhhccCCCceEE
Q 014141 256 VDVVFHVTPMVQKMHCIGSIVSYLPQLKTL 285 (430)
Q Consensus 256 ~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L 285 (430)
+++.+.- .....+ .-+.+|++|+.+
T Consensus 369 ~~i~lp~--~~~~~~---~~F~~c~~L~~I 393 (394)
T 4fs7_A 369 KKVELPK--RLEQYR---YDFEDTTKFKWI 393 (394)
T ss_dssp CEEEEEG--GGGGGG---GGBCTTCEEEEE
T ss_pred CEEEECC--CCEEhh---heecCCCCCcEE
Confidence 9888752 111112 225677777654
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=50.95 E-value=9.1 Score=35.91 Aligned_cols=72 Identities=19% Similarity=0.088 Sum_probs=34.9
Q ss_pred CceeEEEEeccee---eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEE
Q 014141 233 PNLLSFKYIGQDI---NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLN 309 (430)
Q Consensus 233 P~L~~L~~~~~~~---~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~ 309 (430)
.+|+++.+..... ...+.++.+|+++.+.- ....++. .-+.+|++|+.+++..... .. .-...+.+|+.+.
T Consensus 311 ~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~--~aF~~C~~L~~i~~~~~~~-~~-~~~~~~~~L~~i~ 384 (394)
T 4gt6_A 311 ISLKSIDIPEGITQILDDAFAGCEQLERIAIPS--SVTKIPE--SAFSNCTALNNIEYSGSRS-QW-NAISTDSGLQNLP 384 (394)
T ss_dssp TTCCEEECCTTCCEECTTTTTTCTTCCEEEECT--TCCBCCG--GGGTTCTTCCEEEESSCHH-HH-HTCBCCCCC----
T ss_pred CCcCEEEeCCcccEehHhHhhCCCCCCEEEECc--ccCEEhH--hHhhCCCCCCEEEECCcee-eh-hhhhccCCCCEEE
Confidence 4555555543211 13456788888887741 1111111 4467889999998876541 11 1111256677766
Q ss_pred E
Q 014141 310 I 310 (430)
Q Consensus 310 l 310 (430)
+
T Consensus 385 i 385 (394)
T 4gt6_A 385 V 385 (394)
T ss_dssp -
T ss_pred e
Confidence 5
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=36.04 E-value=18 Score=33.85 Aligned_cols=118 Identities=16% Similarity=0.184 Sum_probs=60.6
Q ss_pred CCCCCCCCceEEEeeE--EEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCCccEEEE----
Q 014141 159 GLSGIKSLRSLTLCAV--NVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIEI---- 230 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~l~~i~i---- 230 (430)
.|.++..|+.+.+-.. .+.. ..+.+|+.|+.+.+.. .++.+.-. ..|.+|+.+.+-. ++..|.-
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~----~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~ 331 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGT----GAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFA 331 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECT----TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT
T ss_pred eeeecccccEEecccccceecC----cccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhh
Confidence 4557788888877532 2222 2356788898888753 22222111 1346666666532 1333321
Q ss_pred eCCceeEEEEeccee---eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecc
Q 014141 231 SAPNLLSFKYIGQDI---NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGC 290 (430)
Q Consensus 231 ~~P~L~~L~~~~~~~---~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~ 290 (430)
.+.+|+++.+..... ...+.++.+|+++.+.-.. ... .-+..+.+|+.+.+...
T Consensus 332 ~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~-----~~~-~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 332 GCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSR-----SQW-NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCH-----HHH-HTCBCCCCC--------
T ss_pred CCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCce-----eeh-hhhhccCCCCEEEeCCC
Confidence 245677777654322 2356789999998876221 111 33467788888877543
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=32.25 E-value=25 Score=29.49 Aligned_cols=135 Identities=12% Similarity=0.073 Sum_probs=74.0
Q ss_pred CCCCCceEEEEEee-cCc-chhhHHHHhhccCCCceEEEEecceeeecccccC------CCCccceEEEEEeecCccchh
Q 014141 250 GSLPQLVDVVFHVT-PMV-QKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR------EFPKLMNLNISFTAANQETLL 321 (430)
Q Consensus 250 ~~~~~L~~~~i~~~-~~~-~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~------~~~~L~~L~l~~~~~~~~~~~ 321 (430)
.+.+.|+++.+... ... .....+.+-+..-+.|+.|.|..+. +....-.. .=..|++|+|+...-+.....
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 35566777776532 211 1122333556677889999987776 43221111 135788999877665555566
Q ss_pred hHHHHHhhCCCceEEEEEEeccccccccCcccc--c-cCcCCCccEEEEeeeecChhhHHHHHHHHhcc
Q 014141 322 GLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQI--S-KHSHQHLKLVELQGFNGREIDFELAFYVFENA 387 (430)
Q Consensus 322 ~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~--~-~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a 387 (430)
.+...|+.-..|++|.|...... ..++.+... . -...++|+.+.+. |........++..+..|.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~-~ig~~g~~~ia~aL~~N~tL~~L~l~-~~~~g~~~~ia~aL~~N~ 183 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQS-VLGNQVEMDMMMAIEENESLLRVGIS-FASMEARHRVSEALERNY 183 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSC-CCCHHHHHHHHHHHHHCSSCCEEECC-CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCceeEEECCCCcCc-CcCHHHHHHHHHHHHhCCCcCeEecc-CCCccHHHHHHHHHHhcc
Confidence 67788888888999998532110 112211111 1 1234678877765 322222345666666553
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=25.95 E-value=28 Score=32.41 Aligned_cols=92 Identities=13% Similarity=0.156 Sum_probs=51.1
Q ss_pred CCCCCCCCceEEEeeE--EEcchhHHHHhhcCCcccceeeccCCCCceeeEec--CCCCcceEEEeecCCccEEEE----
Q 014141 159 GLSGIKSLRSLTLCAV--NVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVG--SSIPLKCLDIQFCYSIKEIEI---- 230 (430)
Q Consensus 159 ~~~~~~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~--~~~~L~~L~l~~c~~l~~i~i---- 230 (430)
.+..+.+|+.+.+..- .+.+. -+.+|.+|+.+.|.. .++.+.-.+ .|.+|+.+.+.. ++..|.-
T Consensus 292 ~F~~~~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~ 363 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDSVKFIGEE----AFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQ 363 (394)
T ss_dssp TTTTCTTCCEEEECTTCCEECTT----TTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBT
T ss_pred cccccccccccccccccceechh----hhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhh
Confidence 4456778887777532 22222 256899999998853 233322111 456677666532 2333321
Q ss_pred eCCceeEEEEeccee--eeecCCCCCceEE
Q 014141 231 SAPNLLSFKYIGQDI--NLHVGSLPQLVDV 258 (430)
Q Consensus 231 ~~P~L~~L~~~~~~~--~~~~~~~~~L~~~ 258 (430)
.+++|+++.+..... ...+.++++|+.+
T Consensus 364 ~C~~L~~i~lp~~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 364 GCINLKKVELPKRLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCTTCCEEEEEGGGGGGGGGBCTTCEEEEE
T ss_pred CCCCCCEEEECCCCEEhhheecCCCCCcEE
Confidence 357788887765421 2445677777654
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=24.59 E-value=16 Score=33.91 Aligned_cols=39 Identities=13% Similarity=0.162 Sum_probs=21.9
Q ss_pred ecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEec
Q 014141 248 HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDG 289 (430)
Q Consensus 248 ~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~ 289 (430)
.+.++++|+++.+...... .++. .-+.+|.+|+.++|..
T Consensus 281 aF~~c~~L~~i~l~~~~i~-~I~~--~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIE-TLEP--RVFMDCVKLSSVTLPT 319 (379)
T ss_dssp TTTTCTTCCEEEECCTTCC-EECT--TTTTTCTTCCEEECCT
T ss_pred ccccccccccccccccccc-eehh--hhhcCCCCCCEEEcCc
Confidence 3456777887776421111 1110 3457788888888743
No 168
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=23.54 E-value=50 Score=20.21 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=16.9
Q ss_pred CCccccCCCCCHHHHHHHHhcC
Q 014141 17 ENLEDWFSRFPDDILIHIISGL 38 (430)
Q Consensus 17 ~~~~d~is~LPdeiL~~Ils~L 38 (430)
+.+.+-|+.||.||-..|+|--
T Consensus 15 ~VD~eVF~~LP~dIQ~Ells~~ 36 (48)
T 2kwv_A 15 GVDQEVFKQLPADIQEEILSGK 36 (48)
T ss_dssp TCCGGGTTTSCHHHHHHHTTCC
T ss_pred CCCHHHHHHCcHHHHHHHHhcc
Confidence 3445678999999999988754
Done!