BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014142
         (430 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4G7W|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Minor
           Coat Protein Piii From Ctxphi
 pdb|4G7W|B Chain B, Crystal Structure Of The N-Terminal Domain Of The Minor
           Coat Protein Piii From Ctxphi
 pdb|4G7W|C Chain C, Crystal Structure Of The N-Terminal Domain Of The Minor
           Coat Protein Piii From Ctxphi
          Length = 160

 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 348 KHWVSMGFGLLIIAIILHFTNAIPINKQLYSFSYVCFTAGAADGCLGITNSIFIPEM--D 405
            H +  GFG  I+  +L     + I K  Y F + C +    D C G+    F   +  +
Sbjct: 38  SHQLLFGFGSPIVQSVLFDGCXLDIEKDDYGFVWSCLSNENGDYCKGLYKPRFTQGVSPN 97

Query: 406 WDECD 410
           W  CD
Sbjct: 98  WPXCD 102


>pdb|4G7X|A Chain A, Crystal Structure Of A Complex Between The Ctxphi Piii
           N-Terminal Domain And The Vibrio Cholerae Tola
           C-Terminal Domain
          Length = 105

 Score = 29.6 bits (65), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 349 HWVSMGFGLLIIAIILHFTNAIPINKQLYSFSYVCFTAGAADGCLGITNSIFIPEM--DW 406
           H +  GFG  I+  +L     + I K  Y F + C +    D C G+    F   +  +W
Sbjct: 22  HQLLFGFGSPIVQSVLFDGCMLDIEKDDYGFVWSCLSNENGDYCKGLYKPRFTQGVSPNW 81

Query: 407 DECD 410
             CD
Sbjct: 82  PMCD 85


>pdb|1XR4|A Chain A, X-ray Crystal Structure Of Putative Citrate Lyase Alpha
           Chain/citrate- Acp Transferase [salmonella Typhimurium]
 pdb|1XR4|B Chain B, X-ray Crystal Structure Of Putative Citrate Lyase Alpha
           Chain/citrate- Acp Transferase [salmonella Typhimurium]
          Length = 509

 Score = 29.6 bits (65), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 220 FVIYIITTYSLYVPNWSFSEHSDHGVKKYIVKCGMRGHLGPACNA 264
           F    + + SL   +W   EH  +GV + I   G+RG LG   +A
Sbjct: 89  FRDLTLASSSLIDAHWPLIEHIKNGVVRQIYTSGLRGKLGEEISA 133


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.141    0.455 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,155,157
Number of Sequences: 62578
Number of extensions: 541022
Number of successful extensions: 1160
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1159
Number of HSP's gapped (non-prelim): 3
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)