Query 014142
Match_columns 430
No_of_seqs 195 out of 684
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 02:14:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014142.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014142hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4683 Uncharacterized conser 100.0 3.7E-86 8E-91 658.6 15.5 356 51-430 132-491 (549)
2 COG4299 Uncharacterized protei 100.0 9.1E-66 2E-70 497.5 19.8 287 60-430 5-295 (371)
3 PF07786 DUF1624: Protein of u 99.9 4.3E-21 9.3E-26 181.7 18.0 190 62-347 1-195 (223)
4 COG3503 Predicted membrane pro 99.6 1.6E-14 3.4E-19 143.2 15.4 136 61-225 14-154 (323)
5 COG2311 Predicted membrane pro 99.3 2.6E-11 5.7E-16 125.1 12.1 119 58-196 8-142 (394)
6 PRK10835 hypothetical protein; 98.6 2.1E-07 4.5E-12 95.9 12.0 103 66-194 1-119 (373)
7 PF10129 OpgC_C: OpgC protein; 98.0 0.00016 3.5E-09 74.6 16.5 79 62-145 1-83 (358)
8 PF01757 Acyl_transf_3: Acyltr 97.6 0.0021 4.6E-08 60.4 15.6 83 64-146 2-90 (340)
9 PF06423 GWT1: GWT1; InterPro 97.4 0.00069 1.5E-08 60.9 8.3 86 314-405 3-97 (136)
10 PRK03854 opgC glucans biosynth 97.1 0.003 6.6E-08 64.5 9.8 90 57-147 3-101 (375)
11 COG4645 Uncharacterized protei 95.9 0.02 4.4E-07 58.9 7.1 83 60-147 21-110 (410)
12 COG3274 Predicted O-acyltransf 91.3 2 4.3E-05 44.3 10.8 56 60-115 2-64 (332)
13 COG1835 Predicted acyltransfer 86.1 0.43 9.3E-06 49.1 2.0 69 55-127 7-75 (386)
14 PF15345 TMEM51: Transmembrane 80.4 0.66 1.4E-05 45.6 0.7 52 350-405 9-82 (233)
15 COG3594 NolL Fucose 4-O-acetyl 72.8 5.8 0.00013 41.3 5.1 50 60-115 2-54 (343)
16 PF05857 TraX: TraX protein; 62.8 1.4E+02 0.0031 28.3 12.4 102 65-187 2-103 (219)
17 COG5062 Uncharacterized membra 62.6 19 0.00041 37.9 6.3 237 60-405 108-352 (429)
18 PF07760 DUF1616: Protein of u 45.6 3.3E+02 0.0071 27.3 12.6 76 103-191 29-108 (287)
19 PF07787 DUF1625: Protein of u 42.3 53 0.0011 32.2 5.6 39 352-390 188-232 (248)
20 COG3619 Predicted membrane pro 36.9 1.7E+02 0.0036 28.9 8.0 59 90-150 48-106 (226)
21 PF04235 DUF418: Protein of un 33.9 23 0.00049 32.0 1.4 77 340-429 10-91 (163)
22 PF13828 DUF4190: Domain of un 31.3 79 0.0017 24.9 3.9 49 316-364 9-58 (62)
23 PRK05771 V-type ATP synthase s 29.9 99 0.0022 34.5 5.9 70 312-400 344-413 (646)
24 KOG4683 Uncharacterized conser 27.5 48 0.001 35.3 2.6 44 214-257 296-341 (549)
25 TIGR02230 ATPase_gene1 F0F1-AT 24.4 2.2E+02 0.0048 24.7 5.8 25 315-339 42-68 (100)
26 PF11654 DUF2665: Protein of u 24.4 85 0.0018 23.8 2.8 32 104-135 7-40 (47)
27 KOG2532 Permease of the major 23.7 2.1E+02 0.0045 30.8 6.8 83 314-401 295-380 (466)
28 PF06570 DUF1129: Protein of u 23.5 3.5E+02 0.0077 25.6 7.7 22 369-390 169-190 (206)
29 PRK12567 putative monovalent c 23.3 7.1E+02 0.015 24.4 16.3 29 166-194 51-79 (218)
30 PF03547 Mem_trans: Membrane t 22.8 3.3E+02 0.0071 27.6 7.8 51 99-149 277-328 (385)
31 PF06779 DUF1228: Protein of u 22.7 1.5E+02 0.0032 24.9 4.2 36 327-362 36-71 (85)
32 cd08764 Cyt_b561_CG1275_like N 22.0 3.2E+02 0.0068 26.8 7.0 28 311-338 168-195 (214)
33 PF12811 BaxI_1: Bax inhibitor 20.8 1.1E+02 0.0023 31.2 3.6 64 344-416 173-240 (274)
No 1
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.7e-86 Score=658.56 Aligned_cols=356 Identities=40% Similarity=0.704 Sum_probs=311.8
Q ss_pred hhhhcccccCchhhHHHHHHHHHHHHHHHHhccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHhcccCCChhHHH
Q 014142 51 QLQQLLQQKSKRVATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAV 130 (430)
Q Consensus 51 ~~~~~~~~~~~Rl~SLD~lRGltI~lMIlVN~~g~~~~~l~Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~r~~~k~~~~ 130 (430)
.+.+..++.++|+.|||+|||+|+++||+||+.|+.||+++|++|||++++|+|||+|+||||+|+++|+++..+|.+..
T Consensus 132 ~~~rsla~~r~RL~SLD~FRGltValMIlVdd~GG~~p~I~HapWnG~~LADfVmPfFLfIvGVsials~K~~s~rf~a~ 211 (549)
T KOG4683|consen 132 GEARSLATQRKRLRSLDTFRGLTVALMILVDDGGGGYPWIEHAPWNGLHLADFVMPFFLFIVGVSIALSVKSQSSRFSAT 211 (549)
T ss_pred hhhhhcCCCchhhhhhhhhcCceEEEEEEEecCCCCchhhhcCCcCCccHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 34555666678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCccceehhhHHHHHHHHHHHHHHHHHhhcCCCCCCCccchhhhhhhH
Q 014142 131 KKIIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRRPNVLEPRHLSIFTAYQ 210 (430)
Q Consensus 131 ~kilrRsl~LfllGlll~~~f~~~~~~l~~~~~~~~~Ri~GVLqrIal~Ylv~all~l~~~~~~~~~~~~~~~~~~~~~~ 210 (430)
+|...|+.+|+++|++++++|.|.++++|++.|.+++|++|||||+|++|+++|++..+..+.-..+ .-
T Consensus 212 rKa~~R~cklllwgLflqGgf~h~~~nLTygidve~lR~mGILQr~~~ayLVvAi~~~~~~~~~~~~-----------~S 280 (549)
T KOG4683|consen 212 RKAKARICKLLLWGLFLQGGFLHSMSNLTYGIDVEQLRIMGILQRFGVAYLVVAILHTLCCRPISPQ-----------RS 280 (549)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCcccccCCccHHHHHHHHHHHHhhHHHHHHHHHhhhccCCCccc-----------cc
Confidence 9999999999999999999999999999999999999999999999999999999998776532111 01
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCc---cccCCCCcceeeeecCCCCCCC-CCCChhhhhhhhhcCCCCccCCccccc
Q 014142 211 WQWIGGFIAFVIYIITTYSLYVPNWSF---SEHSDHGVKKYIVKCGMRGHLG-PACNAVGYVDRELWGINHLYSDPVWSR 286 (430)
Q Consensus 211 ~q~~~~~~ll~~Y~~l~~~l~vP~~~~---~~~~~~~~~~~~~~cg~~g~l~-~~~N~a~~IDr~vLG~~HlY~~p~~~~ 286 (430)
||-++....++.|.+..++-+||+|.+ +.-.|+-++.|.++||.++... |.||++||.||++||.+||||+|+|||
T Consensus 281 ~~R~V~~~~L~~~~~~~~~~~V~~~~~~~~~~~~~~~~r~~~~~~G~~~~~~~P~CnAvGy~DrqvLGi~HiY~hP~~~r 360 (549)
T KOG4683|consen 281 WQRAVHDVCLFSGELAVLLALVATYLGLTFGLRVPGCPRGYLGPGGKHDYNAHPKCNAVGYADRQVLGIAHIYQHPTAKR 360 (549)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhhceecccccCCCCcccccCCcccccCCCCCccchhhhHHhhhhhHHHhcCchHHH
Confidence 333444444444444444444443322 1111222333444466667665 459999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhHHHhcccchhHHHHHHHHHHHHHHHHHHHHhh
Q 014142 287 LEACTLSSPNSGPLREDAPSWCRAPFEPEGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILHF 366 (430)
Q Consensus 287 ~~~~~~~~p~~g~~~~~~~~~~~~~fDPEGlLstlpai~~~llG~~aG~iL~~~~~~~~rl~~~l~~G~~ll~lG~ll~~ 366 (430)
+|+||.++|++||++.|+|+||++|||||||||+|.|++++++|+++|+++.+.+.+..|+++|...++++.++|..+++
T Consensus 361 ~k~cs~n~P~nG~l~~DAPSWCqapFdPEGilssi~avv~~llG~h~Ghiilh~k~~~sRir~wis~~~~l~llg~tL~~ 440 (549)
T KOG4683|consen 361 VKDCSINYPNNGPLPPDAPSWCQAPFDPEGILSSILAVVQVLLGAHAGHIILHHKNFQSRIRRWISLAILLGLLGGTLCG 440 (549)
T ss_pred hhhcccCCCCCCCCCCCCchhhcCCCChHHHHHHHHHHHHHHHHhhcCeEEEEccchHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCccccccCCchhHHHHhhhhhhhhHhHHHHhhhhhccCccccccccccccCCCcceEEEecC
Q 014142 367 TNAIPINKQLYSFSYVCFTAGAADGCLGITNSIFIPEMDWDECDACFRAWSTRYPSRICKWMVL 430 (430)
Q Consensus 367 ~~~~PiNK~LWS~SfVL~TsG~a~~~~~llLa~~y~liD~~~~~~~~~v~~~~~~~~~f~v~G~ 430 (430)
.+.+|+||||||.||+|+|+|.|+ ++|+.+|++|| |+.|+..+.||+|.||
T Consensus 441 ~s~~Plnk~L~slsfvCVT~~~A~----Li~S~mY~~iD---------v~EW~~~~~P~~~~GM 491 (549)
T KOG4683|consen 441 FSAIPLNKNLWSLSFVCVTVSLAL----LILSLMYYFID---------VREWSWSGYPFTECGM 491 (549)
T ss_pred ccccchhHhHHHhhhhHHHHHHHH----HHHHHHHHHhh---------HHHhhhccCChhhhcc
Confidence 879999999999999999999999 99999999999 9999999999999998
No 2
>COG4299 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=9.1e-66 Score=497.55 Aligned_cols=287 Identities=29% Similarity=0.396 Sum_probs=257.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHhccc---cccccccccCCCCchhhHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHH
Q 014142 60 SKRVATLDAFRGLTVVLMILVDDAG---GAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIFR 136 (430)
Q Consensus 60 ~~Rl~SLD~lRGltI~lMIlVN~~g---~~~~~l~Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~r~~~k~~~~~kilrR 136 (430)
..|+.|+|++||+|+++||+||+.| +.|+|+.|++|+|+|++|+|||+|+|++|+||+||.+|..+.+....++.||
T Consensus 5 a~RltsLDvfRGlTv~lMilVN~ag~gd~~y~qL~HA~w~G~T~tDlVFP~FLF~vG~am~Fs~sk~~~~n~~tw~~~RR 84 (371)
T COG4299 5 AFRLTSLDVFRGLTVLLMILVNNAGLGDSTYRQLSHAHWGGLTLTDLVFPWFLFCVGAAMPFSASKMNKANVTTWPLYRR 84 (371)
T ss_pred hhhhhhHHHHhhhHHHHHHhhcccccccccccccccccccCCCHHHHHHHHHHHHHhhhccccccccCccCCcchHHHHH
Confidence 4799999999999999999999986 3799999999999999999999999999999999999988888888999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCccccccC-CccceehhhHHHHHHHHHHHHHHHHHhhcCCCCCCCccchhhhhhhHHHHHH
Q 014142 137 TLKLLFWGIILQGGYSHAPDALSYGVD-MKHIRWCGILQRIALVYVVVALIETLTTKRRPNVLEPRHLSIFTAYQWQWIG 215 (430)
Q Consensus 137 sl~LfllGlll~~~f~~~~~~l~~~~~-~~~~Ri~GVLqrIal~Ylv~all~l~~~~~~~~~~~~~~~~~~~~~~~q~~~ 215 (430)
...+|++|.+++. |.... .+.++ .+.+|.+||||||++||+++|+....+++ |+||+.
T Consensus 85 aa~~f~Lg~Lm~~-F~~~~---~ws~~~~s~tr~mGVLQrIaL~ylfAal~v~~L~~-----------------r~q~~l 143 (371)
T COG4299 85 AAERFALGYLMGA-FVTVR---DWSVTSHSLTRGMGVLQRIALAYLFAALLVRQLRG-----------------RWQALL 143 (371)
T ss_pred HHHHHHHHHHhhh-ccccc---eeeeeechhhHHHHHHHHHHHHHHHHHHHHHhcCh-----------------HHHHHH
Confidence 9999999999986 33211 12333 57799999999999999999999877654 589999
Q ss_pred HHHHHHHHHHHHHhcccCCCCccccCCCCcceeeeecCCCCCCCCCCChhhhhhhhhcCCCCccCCccccccccccCCCC
Q 014142 216 GFIAFVIYIITTYSLYVPNWSFSEHSDHGVKKYIVKCGMRGHLGPACNAVGYVDRELWGINHLYSDPVWSRLEACTLSSP 295 (430)
Q Consensus 216 ~~~ll~~Y~~l~~~l~vP~~~~~~~~~~~~~~~~~~cg~~g~l~~~~N~a~~IDr~vLG~~HlY~~p~~~~~~~~~~~~p 295 (430)
+++++++||+++...|+|+.+ ++..+|...++|+...+.||+|..
T Consensus 144 aavLL~gYwl~lm~~p~P~~~---------------------l~~~Gn~g~~~d~l~i~~~hLy~~-------------- 188 (371)
T COG4299 144 AAVLLAGYWLFLMFTPHPAAP---------------------LGGIGNVGESADPLQILNDHLYSA-------------- 188 (371)
T ss_pred HHHHHHHHHHHHhhcCCCccc---------------------cccccccccccchhhhhhhhhhcc--------------
Confidence 999999999988888888643 345679999999999999999974
Q ss_pred CCCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhCCCcccccc
Q 014142 296 NSGPLREDAPSWCRAPFEPEGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILHFTNAIPINKQ 375 (430)
Q Consensus 296 ~~g~~~~~~~~~~~~~fDPEGlLstlpai~~~llG~~aG~iL~~~~~~~~rl~~~l~~G~~ll~lG~ll~~~~~~PiNK~ 375 (430)
+ ..|||||++||+|++++++.|+++++.+++++.+.+...++.+.|++++++|+.|.. .+||||+
T Consensus 189 -d------------G~~dpeGLlstvPttv~VLaGylaar~l~~~p~~~ra~l~la~~Gvvl~~~G~gW~~--~fPi~Kk 253 (371)
T COG4299 189 -D------------GGFDPEGLLSTVPTTVLVLAGYLAARPLQQKPGNPRAPLLLAGLGVVLTALGYGWAG--RFPISKK 253 (371)
T ss_pred -c------------CCCCchhhhhcchHHHHHHHHHHhhhHHhhCCCCCcchHHHHHHHHHHHHhcccccc--ccccchh
Confidence 1 358999999999999999999999999998877777788899999999999999985 6999999
Q ss_pred CCchhHHHHhhhhhhhhHhHHHHhhhhhccCccccccccccccCCCcceEEEecC
Q 014142 376 LYSFSYVCFTAGAADGCLGITNSIFIPEMDWDECDACFRAWSTRYPSRICKWMVL 430 (430)
Q Consensus 376 LWS~SfVL~TsG~a~~~~~llLa~~y~liD~~~~~~~~~v~~~~~~~~~f~v~G~ 430 (430)
|||||||++|+|++. ++++.||.++| .++.|++..||+++|.
T Consensus 254 LWTssyvl~t~G~~l----lllaac~~l~e---------~~~~kr~~~pf~i~Gl 295 (371)
T COG4299 254 LWTSSYVLYTAGLGL----LLLAACWVLAE---------SPGGKRLLAPFTIPGL 295 (371)
T ss_pred hcCCceeehhhhHHH----HHHHHHHHHHc---------CcccCcCcCceeecCc
Confidence 999999999999999 99999999999 9999999999999984
No 3
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=99.87 E-value=4.3e-21 Score=181.73 Aligned_cols=190 Identities=24% Similarity=0.316 Sum_probs=134.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhcccc-cccc-cc-cc--CCCCchhhHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHH
Q 014142 62 RVATLDAFRGLTVVLMILVDDAGG-AYAR-ID-HS--PWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIFR 136 (430)
Q Consensus 62 Rl~SLD~lRGltI~lMIlVN~~g~-~~~~-l~-Ha--~W~G~t~aDlVfP~FlFivGvSi~ls~~r~~~k~~~~~kilrR 136 (430)
|+.+||++||++|++|+++|.... .+.. .+ |. .+....+.|+++|.|+|++|+|++++.+|+.++ ++.+||
T Consensus 1 Ri~~lD~~RGlaii~Mi~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ap~F~fl~G~s~~l~~~~~~~~----~~~~~R 76 (223)
T PF07786_consen 1 RIPSLDALRGLAIIGMILVHFLFDLNYFGGWPQSWFGSFFWRFFRGLAAPLFLFLAGISLALSTGRRRRR----RKFLKR 76 (223)
T ss_pred CcHHHHHHHHHHHHhhhHhhCcChHhhcCccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccch----hHHHHH
Confidence 899999999999999999998754 2211 11 22 234456889999999999999999999887765 788999
Q ss_pred HHHHHHHHHHHhhcCCCCCCccccccCCccceehhhHHHHHHHHHHHHHHHHHhhcCCCCCCCccchhhhhhhHHHHHHH
Q 014142 137 TLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRRPNVLEPRHLSIFTAYQWQWIGG 216 (430)
Q Consensus 137 sl~LfllGlll~~~f~~~~~~l~~~~~~~~~Ri~GVLqrIal~Ylv~all~l~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 216 (430)
++.|+++|++++.. ++....+...++||||.||++|++++++. .+++ +..++++
T Consensus 77 ~~~l~~~g~~i~~~--------~~~~~~~~~i~~gIL~~ig~~~ll~~~~~-~~~~-----------------~~~~~~~ 130 (223)
T PF07786_consen 77 GLKLFLLGLLINLL--------TFFFFPEGFIYFGILQFIGLSMLLAALFL-RLPR-----------------RALLILA 130 (223)
T ss_pred HHHHHHHHHHHHHH--------HHHhcCCceeehhHHHHHHHHHHHHHHHH-hcch-----------------hHHHHHH
Confidence 99999999999864 11223455668899999999999888773 3322 2345556
Q ss_pred HHHHHHHHHHHHhcccCCCCccccCCCCcceeeeecCCCCCCCCCCChhhhhhhhhcCCCCccCCccccccccccCCCCC
Q 014142 217 FIAFVIYIITTYSLYVPNWSFSEHSDHGVKKYIVKCGMRGHLGPACNAVGYVDRELWGINHLYSDPVWSRLEACTLSSPN 296 (430)
Q Consensus 217 ~~ll~~Y~~l~~~l~vP~~~~~~~~~~~~~~~~~~cg~~g~l~~~~N~a~~IDr~vLG~~HlY~~p~~~~~~~~~~~~p~ 296 (430)
++++++++.+... +. +. + +...+| ++.
T Consensus 131 ~~~~~~~~~l~~~--~~-------------------------~~--~-----~~~~~~---~~~---------------- 157 (223)
T PF07786_consen 131 LLLLALSWLLSGP--VF-------------------------GP--P-----WLLWLG---LSS---------------- 157 (223)
T ss_pred HHHHHHHHHHhhh--hc-------------------------Cc--h-----HHHHhc---ccc----------------
Confidence 6666666654321 00 00 0 111222 111
Q ss_pred CCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhHHHhcccchhHHH
Q 014142 297 SGPLREDAPSWCRAPFEPEGLLSTISAILSGTIGIHYGHVLIHFKGHSARL 347 (430)
Q Consensus 297 ~g~~~~~~~~~~~~~fDPEGlLstlpai~~~llG~~aG~iL~~~~~~~~rl 347 (430)
..++++|..+.+|+++..++|+.+|++..+..+.+.+.
T Consensus 158 -------------~~~~~~~~~Pl~PW~~~~l~G~~~G~~~~~~~~~~~~~ 195 (223)
T PF07786_consen 158 -------------RNFFSNGYFPLFPWLGFFLLGMALGRLFLRKGRRRFRV 195 (223)
T ss_pred -------------cCCCcCCcCccHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 24688899999999999999999999987764444343
No 4
>COG3503 Predicted membrane protein [Function unknown]
Probab=99.60 E-value=1.6e-14 Score=143.24 Aligned_cols=136 Identities=21% Similarity=0.255 Sum_probs=103.5
Q ss_pred chhhHHHHHHHHHHHHHHHHhcccc--ccccccccCC-CC--chhhHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHH
Q 014142 61 KRVATLDAFRGLTVVLMILVDDAGG--AYARIDHSPW-NG--CTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIF 135 (430)
Q Consensus 61 ~Rl~SLD~lRGltI~lMIlVN~~g~--~~~~l~Ha~W-~G--~t~aDlVfP~FlFivGvSi~ls~~r~~~k~~~~~kilr 135 (430)
+|+.+||++||++|++|++.|..-+ .+.+.+-+.= .| ..++.++.|.|+|++|+|+.++-+|..++ +++.+|
T Consensus 14 ~R~~~ID~LRGla~l~MalyHf~~dl~ffg~~dl~~ta~g~~r~~ar~~A~~FlFLaG~Sl~L~~~r~~~r---~~~l~k 90 (323)
T COG3503 14 NRLGEIDILRGLALLAMALYHFFWDLEFFGYMDLATTALGLWRYFARLIASSFLFLAGVSLSLSHSRGLRR---WRFLVK 90 (323)
T ss_pred cchhhhHHHhHHHHHHHHHHHHHhhhhhcCccccchhhhhHHHHHHHHHHHHHHHHHhhHheeeccccccc---hHHHHH
Confidence 8999999999999999999885543 2233333222 23 24889999999999999999999887663 789999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccccccCCccceehhhHHHHHHHHHHHHHHHHHhhcCCCCCCCccchhhhhhhHHHHHH
Q 014142 136 RTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRRPNVLEPRHLSIFTAYQWQWIG 215 (430)
Q Consensus 136 Rsl~LfllGlll~~~f~~~~~~l~~~~~~~~~Ri~GVLqrIal~Ylv~all~l~~~~~~~~~~~~~~~~~~~~~~~q~~~ 215 (430)
|.++|..+++.++.. |+..-++++.++|||+.||++.++.+.+. .+++. ++..+
T Consensus 91 RgL~l~~l~l~It~~--------Twf~~P~sfI~fgILh~igLa~ll~~~fl-~lP~~-----------------~~l~~ 144 (323)
T COG3503 91 RGLKLAALALAITAV--------TWFAFPDSFIFFGILHAIGLASLLGAAFL-WLPRA-----------------VLLAL 144 (323)
T ss_pred HHHHHHHHHHHHHHe--------eeEecCCceehHHHHHHHHHHHHHHHHHH-hCchH-----------------HHHHH
Confidence 999999999999874 34333588999999999999998877654 44432 35566
Q ss_pred HHHHHHHHHH
Q 014142 216 GFIAFVIYII 225 (430)
Q Consensus 216 ~~~ll~~Y~~ 225 (430)
++++++++..
T Consensus 145 a~~~v~~~~l 154 (323)
T COG3503 145 AVAAVAAHIL 154 (323)
T ss_pred HHHHHHhHHh
Confidence 6666665553
No 5
>COG2311 Predicted membrane protein [Function unknown]
Probab=99.27 E-value=2.6e-11 Score=125.13 Aligned_cols=119 Identities=29% Similarity=0.485 Sum_probs=94.0
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHhcccccccc----ccccCC-CCc-----hhhHH-----HHHHHHHHHHHHHHHhccc
Q 014142 58 QKSKRVATLDAFRGLTVVLMILVDDAGGAYAR----IDHSPW-NGC-----TLADF-----VMPFFLFIVGVAIALALKK 122 (430)
Q Consensus 58 ~~~~Rl~SLD~lRGltI~lMIlVN~~g~~~~~----l~Ha~W-~G~-----t~aDl-----VfP~FlFivGvSi~ls~~r 122 (430)
..++|+.++|++||+++++++++|.....+|. .-|..| .+. -+.|+ +.|.|.|++|+++...++|
T Consensus 8 ~~~eRi~~LDilRG~AlLGILl~Ni~~F~~p~~~~~~~~~~~~s~~D~~a~~~v~~f~~~KF~~lFs~LFG~G~~~~~~r 87 (394)
T COG2311 8 AQRERILTLDILRGFALLGILLVNISAFGYPGAAYLNPWSGWLSPLDAWAWALVDLFAQGKFLTLFSFLFGVGLAMMLRR 87 (394)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHhCchHHHhCcCcccCChHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHH
Confidence 34689999999999999999999987654431 113332 221 13333 7899999999999999998
Q ss_pred CCChhH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCccceehhhHHHHHHHHHHHHHHHHHhhcCCCC
Q 014142 123 VPKING-AVKKIIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRRPN 196 (430)
Q Consensus 123 ~~~k~~-~~~kilrRsl~LfllGlll~~~f~~~~~~l~~~~~~~~~Ri~GVLqrIal~Ylv~all~l~~~~~~~~ 196 (430)
..+|++ .....+||...|+++|++|.. |.|. ++|-+.|.+++++.+.++++++|
T Consensus 88 ~~~~g~~~~~~~~RR~~~Lll~G~iH~~-fiW~-------------------GDIL~~Ya~~g~ill~~~~~~~k 142 (394)
T COG2311 88 AARKGRRWVALYARRLLLLLLLGLIHAL-FIWD-------------------GDILLAYALTGLILLLFRRRKPK 142 (394)
T ss_pred HHHccCccHHHHHHHHHHHHHHHHHHHH-HHhc-------------------chHHHHHHHHHHHHHHHHhcccc
Confidence 776664 567779999999999999975 4443 89999999999999999998765
No 6
>PRK10835 hypothetical protein; Provisional
Probab=98.65 E-value=2.1e-07 Score=95.94 Aligned_cols=103 Identities=22% Similarity=0.287 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHhcccccccc-------ccc--cCCCCc--hhhHH-----HHHHHHHHHHHHHHHhcccCCChhHH
Q 014142 66 LDAFRGLTVVLMILVDDAGGAYAR-------IDH--SPWNGC--TLADF-----VMPFFLFIVGVAIALALKKVPKINGA 129 (430)
Q Consensus 66 LD~lRGltI~lMIlVN~~g~~~~~-------l~H--a~W~G~--t~aDl-----VfP~FlFivGvSi~ls~~r~~~k~~~ 129 (430)
||++||+++++++++|......+. ..| +.+|.. .+.++ .+|+|.+++|+++.+-.+|..+
T Consensus 1 lD~lRGfALlGIllvNi~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~gKf~~LFs~LFG~G~~l~~~r~~~---- 76 (373)
T PRK10835 1 LDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAISPSDAWTWAILDLVAQVKFLTLFALLFGAGLQLLLPRGKR---- 76 (373)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCccccccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhH----
Confidence 699999999999999954332221 111 011111 12233 6899999999999999875221
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCccceehhhHHHHHHHHHHHHHHHHHhhcCC
Q 014142 130 VKKIIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRR 194 (430)
Q Consensus 130 ~~kilrRsl~LfllGlll~~~f~~~~~~l~~~~~~~~~Ri~GVLqrIal~Ylv~all~l~~~~~~ 194 (430)
...||.+.|+++|++|... .|. ++|-..|.+++++.+.+.+.+
T Consensus 77 --~~~rRl~~Ll~~GliH~~l-lw~-------------------GDIL~~YAv~Gl~l~~~~~~~ 119 (373)
T PRK10835 77 --WIQSRLTLLVLLGFIHGLL-FWD-------------------GDILLAYGLVGLICWRLIRDA 119 (373)
T ss_pred --HHHHHHHHHHHHHHHHHHH-Hcc-------------------chHHHHHHHHHHHHHHHHhcc
Confidence 3569999999999999752 232 789999999999998887763
No 7
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.05 E-value=0.00016 Score=74.58 Aligned_cols=79 Identities=24% Similarity=0.374 Sum_probs=52.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhccc-cccccccccCCCCchhhHHHHHHHHHHHHHHHHHhcccCCChh---HHHHHHHHHH
Q 014142 62 RVATLDAFRGLTVVLMILVDDAG-GAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKIN---GAVKKIIFRT 137 (430)
Q Consensus 62 Rl~SLD~lRGltI~lMIlVN~~g-~~~~~l~Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~r~~~k~---~~~~kilrRs 137 (430)
|...||.+||++++.| ++|+.. +.+..+.| +.+.+.| -.-.|+|++|++..+.+.|+..|+ ...+|+.||+
T Consensus 1 Rd~riD~~RGlaL~~I-fi~Hip~~~~~~~T~---~~~Gfsd-aAE~FVflSG~~~gl~Y~~~~~~~g~~~~~~r~~~Ra 75 (358)
T PF10129_consen 1 RDLRIDFFRGLALVMI-FIDHIPGNVLEWFTL---RNFGFSD-AAEGFVFLSGYAAGLAYGRRFRRRGLWAATRRLWRRA 75 (358)
T ss_pred CchHHHHHHHHHHHHH-HHHhcCCcHHHHhcc---ccccCCC-cchhHhhHHHHHHHHHHhHHHhhcCHHHHHHHHHHHH
Confidence 6678999999999555 666654 33322333 2233333 245699999999999998765332 4688899998
Q ss_pred HHHHHHHH
Q 014142 138 LKLLFWGI 145 (430)
Q Consensus 138 l~LfllGl 145 (430)
..|..--+
T Consensus 76 ~~lY~a~i 83 (358)
T PF10129_consen 76 WQLYVAHI 83 (358)
T ss_pred HHHHHHHH
Confidence 77654433
No 8
>PF01757 Acyl_transf_3: Acyltransferase family; InterPro: IPR002656 This entry contains a range of acyltransferase enzymes as well as yet uncharacterised proteins from Caenorhabditis elegans. It also includes the protein OatA. The pathogenic bacteria, Staphylococcus aureus, is able to cause persistent infections due to its ability to resist the immune defence system. Lysozyme, a cell wall-lytic enzyme, is one of the first defence compounds induced in serum and tissues after the onset of infection. S. aureus has complete resistance to lysozyme action by O-acetylating its peptidoglycan (PG) by O-acetyltransferase (OatA) [, ]. Staphylococcus bacteria are one of the only bacterial genera that are resistant to lysozyme and tend to colonise the skin and mucosa of humans and animals []. OatA is an integral membrane protein. This entry also includes NolL proteins. NolL-dependent acetylation is specific for the fucosyl penta-N-acetylglucosamine species. In addition, the NolL protein caused elevated production of lipo-chitin oligosaccharides (LCOs). The NolL protein obtained from Rhizobium loti (Mesorhizobium loti) functions as an acetyl transferase [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=97.65 E-value=0.0021 Score=60.43 Aligned_cols=83 Identities=20% Similarity=0.307 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHHHhcccccccc-ccccCCCC-----chhhHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHH
Q 014142 64 ATLDAFRGLTVVLMILVDDAGGAYAR-IDHSPWNG-----CTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIFRT 137 (430)
Q Consensus 64 ~SLD~lRGltI~lMIlVN~~g~~~~~-l~Ha~W~G-----~t~aDlVfP~FlFivGvSi~ls~~r~~~k~~~~~kilrRs 137 (430)
.++|.+||++++++++.|........ ........ .....+..|+|.++.|..+....+++.+..+..+|-++|.
T Consensus 2 ~~iD~lR~ia~l~Vv~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ff~iSG~~~~~~~~~~~~~~~~~~~R~~rl 81 (340)
T PF01757_consen 2 YWIDGLRGIAILLVVFGHSFIFYFPPPFQGWPIFDSFSIFLFIGRFAVPLFFFISGYLLARSSKSRKSWKKFLKKRFLRL 81 (340)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcccccccchhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHH
Confidence 58999999999999998865431110 01000000 0567889999999999999811112222223444445555
Q ss_pred HHHHHHHHH
Q 014142 138 LKLLFWGII 146 (430)
Q Consensus 138 l~LfllGll 146 (430)
....++..+
T Consensus 82 ~~~~~~~~~ 90 (340)
T PF01757_consen 82 LIPYLFWSL 90 (340)
T ss_pred hHHHHHHHH
Confidence 444444433
No 9
>PF06423 GWT1: GWT1; InterPro: IPR009447 Glycosylphosphatidylinositol (GPI) is a conserved post-translational modification to anchor cell surface proteins to plasma membrane in eukaryotes. GWT1 is involved in GPI anchor biosynthesis; it is required for inositol acylation in yeast [].; GO: 0016746 transferase activity, transferring acyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=97.40 E-value=0.00069 Score=60.91 Aligned_cols=86 Identities=16% Similarity=0.248 Sum_probs=67.7
Q ss_pred CCcchhhhHHHHHHHHHHHHhHHHhcccchh---------HHHHHHHHHHHHHHHHHHHHhhCCCccccccCCchhHHHH
Q 014142 314 PEGLLSTISAILSGTIGIHYGHVLIHFKGHS---------ARLKHWVSMGFGLLIIAIILHFTNAIPINKQLYSFSYVCF 384 (430)
Q Consensus 314 PEGlLstlpai~~~llG~~aG~iL~~~~~~~---------~rl~~~l~~G~~ll~lG~ll~~~~~~PiNK~LWS~SfVL~ 384 (430)
-|||+|.+.-++.=++|+..|+.+...+... +...+++.+++++.++-.+++. ...|+..++...+||++
T Consensus 3 rEGi~S~~GY~aIyl~g~~~G~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~vSRRlaNl~Yvlw 81 (136)
T PF06423_consen 3 REGIFSLPGYLAIYLIGVSLGRYILPPSSSSNSSSRRQWIKLLIKLLILSFIFWALYYLLNS-YIEPVSRRLANLPYVLW 81 (136)
T ss_pred cchhhhHHHHHHHHHHHHHHhhhhhCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-CCCchhHHhcchHHHHH
Confidence 5999999999999999999999986544333 3445666777777777777753 37999999999999999
Q ss_pred hhhhhhhhHhHHHHhhhhhcc
Q 014142 385 TAGAADGCLGITNSIFIPEMD 405 (430)
Q Consensus 385 TsG~a~~~~~llLa~~y~liD 405 (430)
+.+... ..++. |.++|
T Consensus 82 v~a~n~----~~l~~-~~~i~ 97 (136)
T PF06423_consen 82 VLAFNT----FFLAL-YLLIE 97 (136)
T ss_pred HHHHHH----HHHHH-HHHHH
Confidence 999998 66655 44445
No 10
>PRK03854 opgC glucans biosynthesis protein; Provisional
Probab=97.05 E-value=0.003 Score=64.55 Aligned_cols=90 Identities=19% Similarity=0.135 Sum_probs=59.9
Q ss_pred cccCchhhHHHHHHHHHHHHHHHHhcccc--cccc----ccccCCCCc-h-hhH-HHHHHHHHHHHHHHHHhcccCCChh
Q 014142 57 QQKSKRVATLDAFRGLTVVLMILVDDAGG--AYAR----IDHSPWNGC-T-LAD-FVMPFFLFIVGVAIALALKKVPKIN 127 (430)
Q Consensus 57 ~~~~~Rl~SLD~lRGltI~lMIlVN~~g~--~~~~----l~Ha~W~G~-t-~aD-lVfP~FlFivGvSi~ls~~r~~~k~ 127 (430)
+++++|...+|.+||+++++.++.|.... .... .+...|-.. . ..+ +-+|.|.|++|.....+.+|+ +.+
T Consensus 3 ~~~~~R~~~lD~lR~~a~l~VV~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~mplFf~iSG~~~~~~~~~~-~~~ 81 (375)
T PRK03854 3 PVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAEPSLWLTLLNDFIHAFRMQVFFVISGYFSYMLFLRY-PPK 81 (375)
T ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHH
Confidence 34467999999999999999988775321 1110 011112111 0 111 458999999999988887554 345
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014142 128 GAVKKIIFRTLKLLFWGIIL 147 (430)
Q Consensus 128 ~~~~kilrRsl~LfllGlll 147 (430)
+..++=++|.++-++++.++
T Consensus 82 ~f~~~R~~rl~iP~l~~~~~ 101 (375)
T PRK03854 82 RWLKVRLERVGIPMLTAIPL 101 (375)
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 67888888888888887654
No 11
>COG4645 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.92 E-value=0.02 Score=58.90 Aligned_cols=83 Identities=24% Similarity=0.442 Sum_probs=56.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHhcc-ccccccccccCCCCchhhHHHHHHHHHHHHHHHHHhcccCCChh-H--HHHHHHH
Q 014142 60 SKRVATLDAFRGLTVVLMILVDDA-GGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKIN-G--AVKKIIF 135 (430)
Q Consensus 60 ~~Rl~SLD~lRGltI~lMIlVN~~-g~~~~~l~Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~r~~~k~-~--~~~kilr 135 (430)
.+|...||++||++++.| ++|+. +..+..+.|.+. | +.|- .=-|+|++|+++...++|+--++ + -..|+-|
T Consensus 21 mkRdtriDv~Ral~Lv~I-fiNHvpgt~le~itHknf-g--fsda-AEaFVliSGllvgmaYsrKf~~ggrla~~lkiWr 95 (410)
T COG4645 21 MKRDTRIDVFRALALVTI-FINHVPGTILEEITHKNF-G--FSDA-AEAFVLISGLLVGMAYSRKFMKGGRLAGTLKIWR 95 (410)
T ss_pred cCchhHHHHHHHHHHHHH-HHhcccHHHHHHhhcccc-c--cccc-chhhhhHHHHHHHHHHhhhhccCcHHHHHHHHHH
Confidence 479999999999999777 55765 434444555542 1 2221 23599999999999998764332 2 3558888
Q ss_pred HHHHHHH---HHHHH
Q 014142 136 RTLKLLF---WGIIL 147 (430)
Q Consensus 136 Rsl~Lfl---lGlll 147 (430)
|+..|.. .|+++
T Consensus 96 RA~~LY~~himtl~i 110 (410)
T COG4645 96 RAMVLYVAHIMTLVI 110 (410)
T ss_pred HHHHHHHHHHHHHHH
Confidence 8888876 44444
No 12
>COG3274 Predicted O-acyltransferase [General function prediction only]
Probab=91.30 E-value=2 Score=44.31 Aligned_cols=56 Identities=16% Similarity=0.386 Sum_probs=41.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHhcccc-cccc-cccc-CC---CCc-hhhHHHHHHHHHHHHHH
Q 014142 60 SKRVATLDAFRGLTVVLMILVDDAGG-AYAR-IDHS-PW---NGC-TLADFVMPFFLFIVGVA 115 (430)
Q Consensus 60 ~~Rl~SLD~lRGltI~lMIlVN~~g~-~~~~-l~Ha-~W---~G~-t~aDlVfP~FlFivGvS 115 (430)
.+|+.++|.+|+++++..+.+|.... .+.+ ..|. .| |.+ +..-.+-|+|..+.|.-
T Consensus 2 ~~ri~wiD~~r~iA~f~VV~iH~~~~~~t~~~~vs~~~w~i~nvlns~sr~aVPLFfmISGyL 64 (332)
T COG3274 2 QPRIVWIDLLRSIACFMVVMIHSTLWSVTEAHFVSPTLWIIANVLNSASRVAVPLFFMISGYL 64 (332)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999988888887653 2222 2333 14 554 36677999999999964
No 13
>COG1835 Predicted acyltransferases [Lipid metabolism]
Probab=86.07 E-value=0.43 Score=49.08 Aligned_cols=69 Identities=16% Similarity=0.263 Sum_probs=42.8
Q ss_pred cccccCchhhHHHHHHHHHHHHHHHHhccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHhcccCCChh
Q 014142 55 LLQQKSKRVATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKIN 127 (430)
Q Consensus 55 ~~~~~~~Rl~SLD~lRGltI~lMIlVN~~g~~~~~l~Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~r~~~k~ 127 (430)
..++.++|+.+||.+||++.++.++.|......+. +..+.+ ...+.-.+|..++|.-+.-++.++..++
T Consensus 7 ~~~~~~~~~~~ldgLR~iAal~Vv~~H~~~~~~~~--~~g~~~--~g~~gVdiFFvlSGfli~~~~~~~~~~~ 75 (386)
T COG1835 7 AINSSGGRLPGLDGLRAIAALLVVLYHAGFQIGPG--PGGFVG--RGVLGVDLFFVLSGFLITRSLLRSAAAP 75 (386)
T ss_pred cccccccccCCcHHHHHHHHHHHHHHHccccccCC--CCcccc--ccccceeEeeeccHHHHHHHHHHHhhcC
Confidence 33444679999999999999888887754331110 111110 1123334577889999998876654443
No 14
>PF15345 TMEM51: Transmembrane protein 51
Probab=80.44 E-value=0.66 Score=45.55 Aligned_cols=52 Identities=29% Similarity=0.505 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCcc----------------------ccccCCchhHHHHhhhhhhhhHhHHHHhhhhhcc
Q 014142 350 WVSMGFGLLIIAIILHFTNAIP----------------------INKQLYSFSYVCFTAGAADGCLGITNSIFIPEMD 405 (430)
Q Consensus 350 ~l~~G~~ll~lG~ll~~~~~~P----------------------iNK~LWS~SfVL~TsG~a~~~~~llLa~~y~liD 405 (430)
+-.+|+.|+++|.++-.+.++| .+++=-|.-|||+-+|+++ |+|++|.-+=|
T Consensus 9 L~AiG~Gml~LGiiM~vW~~VPg~~~~~~~~~~~~n~~~~~~~~~ksKt~SVAyVLVG~Gv~L----LLLSICL~IR~ 82 (233)
T PF15345_consen 9 LTAIGVGMLALGIIMIVWNLVPGFSSGNKPTPQGSNSTEPSDGNLKSKTFSVAYVLVGSGVAL----LLLSICLSIRD 82 (233)
T ss_pred HHHHhHhHHHHhhHheeeeecccccCCCCCCCCCCCCcCCCCCcccceeEEEEEehhhHHHHH----HHHHHHHHHHH
Confidence 4467899999998876443333 2334567789999999999 99999987777
No 15
>COG3594 NolL Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]
Probab=72.77 E-value=5.8 Score=41.27 Aligned_cols=50 Identities=28% Similarity=0.484 Sum_probs=37.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHhccccccccccccCCCCc---hhhHHHHHHHHHHHHHH
Q 014142 60 SKRVATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGC---TLADFVMPFFLFIVGVA 115 (430)
Q Consensus 60 ~~Rl~SLD~lRGltI~lMIlVN~~g~~~~~l~Ha~W~G~---t~aDlVfP~FlFivGvS 115 (430)
++|-.++|+-||+-|++.++-|..+..++ |.-. -+.-+-+|+|.||.|.-
T Consensus 2 ~~R~~~~D~AKGigIlLVV~GH~~~p~~~------~~~~l~~~IysFHMPlFf~ISGyf 54 (343)
T COG3594 2 KKRDLWFDAAKGIGILLVVFGHILQPISP------WLSVLYKFIYSFHMPLFFFISGYF 54 (343)
T ss_pred chhHHHHhHhhccchhhhhhhhhcccccc------cchHHHHHHHHHHHHHHHhhhhhc
Confidence 57999999999999999988776543221 3321 24456899999999975
No 16
>PF05857 TraX: TraX protein; InterPro: IPR008875 This family consists of several bacterial TraX proteins. TraX is responsible for the N-terminal acetylation of F-pilin subunits [].
Probab=62.83 E-value=1.4e+02 Score=28.33 Aligned_cols=102 Identities=21% Similarity=0.368 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHH
Q 014142 65 TLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIFRTLKLLFWG 144 (430)
Q Consensus 65 SLD~lRGltI~lMIlVN~~g~~~~~l~Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~r~~~k~~~~~kilrRsl~LfllG 144 (430)
|-|.+.=++++.|++ |+.+..+ ....+| -..+.-+.||.|.|++.-...- .+..+|+++|.+ +++
T Consensus 2 s~~~LK~iA~i~M~i-DHi~~~~--~~~~~~-~~~iGR~afPlF~f~~~eG~~~--------T~n~~kY~~RL~---~~a 66 (219)
T PF05857_consen 2 SGFQLKIIAIIAMLI-DHIGFLF--FPDGPW-LRIIGRIAFPLFAFLLVEGFFH--------TRNRKKYLLRLL---IFA 66 (219)
T ss_pred chhHHHHHHHHHHHH-Hhhcccc--cCcchH-HHHhhHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHH---HHH
Confidence 568888899999977 5444221 222333 2237788999999998766433 123467777744 444
Q ss_pred HHHhhcCCCCCCccccccCCccceehhhHHHHHHHHHHHHHHH
Q 014142 145 IILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIE 187 (430)
Q Consensus 145 lll~~~f~~~~~~l~~~~~~~~~Ri~GVLqrIal~Ylv~all~ 187 (430)
++.+..+... .. ........+|+--++++..+..++.
T Consensus 67 lis~ip~~l~-----~~-~~~~~~~~NI~fTl~lg~~~l~~~~ 103 (219)
T PF05857_consen 67 LISQIPFDLA-----FG-KFFDWLSQNILFTLALGLLALYLLD 103 (219)
T ss_pred HHHHHHHHHH-----hh-cccccccccHHHHHHHHHHHHHHHH
Confidence 4443321110 00 1112334466666666665555544
No 17
>COG5062 Uncharacterized membrane protein [Function unknown]
Probab=62.57 E-value=19 Score=37.92 Aligned_cols=237 Identities=19% Similarity=0.240 Sum_probs=132.1
Q ss_pred CchhhHHHHHHHHHHHHHHH----Hhccccccc-cccccCCCCchhhHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHH
Q 014142 60 SKRVATLDAFRGLTVVLMIL----VDDAGGAYA-RIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKII 134 (430)
Q Consensus 60 ~~Rl~SLD~lRGltI~lMIl----VN~~g~~~~-~l~Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~r~~~k~~~~~kil 134 (430)
+.|..++|..|+..+..-+. |+.+ .|| -+..++--|..+-|+---.|+|-.|+--. |.++| +.+
T Consensus 108 ~~~~~~it~yR~~i~~~tviaIlAvDFp--~fprRlgKsetwGtsLMDiGVGSFvynsGivs~----RaksK-----~~l 176 (429)
T COG5062 108 PYTSMAITRYRFLIIGCTVIAILAVDFP--FFPRRLGKSETWGTSLMDIGVGSFVYNSGIVST----RAKSK-----RKL 176 (429)
T ss_pred ccchhhhHHHHHHHHHhhhhheeeeccc--cchHhhhhhhcccceeeecccceeEeccceeec----ccCcc-----HHH
Confidence 46788899999865533222 2221 122 13444445888999998999988886421 22222 378
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccccccCCccceehhhHHHHHHHHHHHHHHHHHhhcCCCCCCCccchhhhhhhHHHHH
Q 014142 135 FRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRRPNVLEPRHLSIFTAYQWQWI 214 (430)
Q Consensus 135 rRsl~LfllGlll~~~f~~~~~~l~~~~~~~~~Ri~GVLqrIal~Ylv~all~l~~~~~~~~~~~~~~~~~~~~~~~q~~ 214 (430)
|-++.|+.+|++=... .. +.--.+|.|=.||=.-.=+.-.+..+.+.+.+++ ....
T Consensus 177 kn~lillflGflR~f~-vk------~lnyqvhvrEyGvhwNFfftLgllnl~~~fir~r-----------------~nfl 232 (429)
T COG5062 177 KNALILLFLGFLRYFS-VK------LLNYQVHVREYGVHWNFFFTLGLLNLASLFIRTR-----------------ANFL 232 (429)
T ss_pred HhhhHHHHHHHHHHHH-HH------HhccccccHHheeehhHHHHHHHHHHHHHHhhhh-----------------HhHH
Confidence 8999999999964321 00 0111235555565555444445555555555432 1245
Q ss_pred HHHHHHHHHHHHHHhcccCCCCccccCCCCcceeeeecCCCCCCCCCCChhhhhhhhhcCCCCccCCccccccccccCCC
Q 014142 215 GGFIAFVIYIITTYSLYVPNWSFSEHSDHGVKKYIVKCGMRGHLGPACNAVGYVDRELWGINHLYSDPVWSRLEACTLSS 294 (430)
Q Consensus 215 ~~~~ll~~Y~~l~~~l~vP~~~~~~~~~~~~~~~~~~cg~~g~l~~~~N~a~~IDr~vLG~~HlY~~p~~~~~~~~~~~~ 294 (430)
++..+...|-+++-..+ ++ +. +|..
T Consensus 233 Lg~fi~l~he~lLkf~~--------------------------l~---kf-------------i~sa------------- 257 (429)
T COG5062 233 LGFFICLTHELLLKFFG--------------------------LE---KF-------------IYSA------------- 257 (429)
T ss_pred HHHHHHHHHHHHHHhcc--------------------------HH---Hh-------------hhcC-------------
Confidence 55556666665543210 10 11 1111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhHHHhcccchhHHHHHHHHHHHH---HHHHHHHHhhCCCcc
Q 014142 295 PNSGPLREDAPSWCRAPFEPEGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFG---LLIIAIILHFTNAIP 371 (430)
Q Consensus 295 p~~g~~~~~~~~~~~~~fDPEGlLstlpai~~~llG~~aG~iL~~~~~~~~rl~~~l~~G~~---ll~lG~ll~~~~~~P 371 (430)
|++--+ .=.-|||.|++|-+..-+.|.-.|++....+. .|.+.|=.++.. .+.+=.+.++.. --
T Consensus 258 ~R~~il----------~~NrEGI~sll~yisIfl~g~~tg~vvf~~kp--Tr~~~wk~~~~~~af~lciylVfnf~s-~s 324 (429)
T COG5062 258 ARSSIL----------TSNREGITSLLPYISIFLMGADTGKVVFKKKP--TRKKAWKIIILYNAFFLCVYLVFNFYS-TS 324 (429)
T ss_pred chhhHH----------HhchhhhhhcchhhhheeeecccceEEecCCC--chHHHHHHHHHHHHHHHHHHHHHhhcc-cc
Confidence 111101 11679999999999999999999999865544 333344444433 122222223321 11
Q ss_pred ccccCCchhHHHHhhhhhhhhHhHHHHhhhhhcc
Q 014142 372 INKQLYSFSYVCFTAGAADGCLGITNSIFIPEMD 405 (430)
Q Consensus 372 iNK~LWS~SfVL~TsG~a~~~~~llLa~~y~liD 405 (430)
..++=...||++..-+-. +....|.++|
T Consensus 325 -sRRlaNlpfv~wi~~lh~-----f~lt~y~lfd 352 (429)
T COG5062 325 -SRRLANLPFVMWIMLLHT-----FHLTVYELFD 352 (429)
T ss_pred -hhhhcCccHHHHHHHHHH-----HHhheeeeee
Confidence 677778888888766554 3444577777
No 18
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=45.61 E-value=3.3e+02 Score=27.32 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHhc--ccCC-Ch-hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCccceehhhHHHHHH
Q 014142 103 FVMPFFLFIVGVAIALAL--KKVP-KI-NGAVKKIIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIAL 178 (430)
Q Consensus 103 lVfP~FlFivGvSi~ls~--~r~~-~k-~~~~~kilrRsl~LfllGlll~~~f~~~~~~l~~~~~~~~~Ri~GVLqrIal 178 (430)
+.+|+.+|+=|.++.=++ ++.. +. ++....+---..+..++|+++|.. . -.+|..-++--+++
T Consensus 29 ~g~~~vlf~PGy~l~~~lfp~~~~l~~~er~~ls~glSi~~~~~~g~~l~~~-~------------~~i~~~~i~~~l~~ 95 (287)
T PF07760_consen 29 LGFPFVLFLPGYALVAALFPRKHDLDGIERLALSVGLSIAIVPLIGLLLNYT-P------------WGIRLIPILISLSI 95 (287)
T ss_pred HHHHHHHHhccHHHHHHHccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc-c------------CCcchhHHHHHHHH
Confidence 588999999999998887 4332 21 123333444555677788888753 1 13566666666666
Q ss_pred HHHHHHHHHHHhh
Q 014142 179 VYVVVALIETLTT 191 (430)
Q Consensus 179 ~Ylv~all~l~~~ 191 (430)
.-++++++...-+
T Consensus 96 ~t~~~~~~a~~rr 108 (287)
T PF07760_consen 96 FTLVLSIIAYIRR 108 (287)
T ss_pred HHHHHHHHHHHhc
Confidence 6666666664433
No 19
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=42.28 E-value=53 Score=32.19 Aligned_cols=39 Identities=23% Similarity=0.322 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhh------CCCccccccCCchhHHHHhhhhhh
Q 014142 352 SMGFGLLIIAIILHF------TNAIPINKQLYSFSYVCFTAGAAD 390 (430)
Q Consensus 352 ~~G~~ll~lG~ll~~------~~~~PiNK~LWS~SfVL~TsG~a~ 390 (430)
+.|.+++.+|+.+-+ ..++|+.-+|-+....+++.-+++
T Consensus 188 ~~G~llmf~G~~~~~~~l~~l~~~~P~lg~l~~~~~~~~~~~~s~ 232 (248)
T PF07787_consen 188 FIGWLLMFIGFFLLFSPLYTLVDWIPLLGNLVGFGLFLVAFIISF 232 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhceeechhhhHHHHHHHHHHH
Confidence 567777777765543 257999999888777777654444
No 20
>COG3619 Predicted membrane protein [Function unknown]
Probab=36.87 E-value=1.7e+02 Score=28.91 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=43.7
Q ss_pred ccccCCCCchhhHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 014142 90 IDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIFRTLKLLFWGIILQGG 150 (430)
Q Consensus 90 l~Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~r~~~k~~~~~kilrRsl~LfllGlll~~~ 150 (430)
.+-++++.....+...|.+.|++|+.+.-.++|+..+ ...-.+.+...++.+++.....
T Consensus 48 i~l~~~~~~~a~~~~~pii~Fv~Gv~~~~~~~r~~~~--~~~~~l~~~~~ll~~~v~~~~~ 106 (226)
T COG3619 48 IELAEGDAALAVLLLLPILAFVLGVAAAELISRRATR--SFIPVLLLVSLLLALIALLALG 106 (226)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHh
Confidence 4456677778889999999999999998888776554 2334556777777777776543
No 21
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=33.87 E-value=23 Score=32.02 Aligned_cols=77 Identities=14% Similarity=0.003 Sum_probs=40.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhh-----CCCccccccCCchhHHHHhhhhhhhhHhHHHHhhhhhccCcccccccc
Q 014142 340 FKGHSARLKHWVSMGFGLLIIAIILHF-----TNAIPINKQLYSFSYVCFTAGAADGCLGITNSIFIPEMDWDECDACFR 414 (430)
Q Consensus 340 ~~~~~~rl~~~l~~G~~ll~lG~ll~~-----~~~~PiNK~LWS~SfVL~TsG~a~~~~~llLa~~y~liD~~~~~~~~~ 414 (430)
.+++++..++.+.++++..+...++.. ....+.+....+....+.....++ ...+++..+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~----~y~~l~~ll~~--------- 76 (163)
T PF04235_consen 10 PEEHRKLLRRLLLIGLAVGLPLALLSAASWLSAWPSPPAAHLSSVLYMLGGPLLAL----GYVALLILLCQ--------- 76 (163)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH---------
Confidence 445555566666555555433332222 112344444455555555556666 66677777777
Q ss_pred ccccCCCcceEEEec
Q 014142 415 AWSTRYPSRICKWMV 429 (430)
Q Consensus 415 v~~~~~~~~~f~v~G 429 (430)
-.+.+++..||+-.|
T Consensus 77 ~~~~~~~~~~l~~~G 91 (163)
T PF04235_consen 77 KRPRQRLLRPLAAVG 91 (163)
T ss_pred HcCccHHHHHHHHHh
Confidence 444445555554443
No 22
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=31.35 E-value=79 Score=24.95 Aligned_cols=49 Identities=27% Similarity=0.398 Sum_probs=24.2
Q ss_pred cchhhhHHHHHHHHHHHHhHHHhc-ccchhHHHHHHHHHHHHHHHHHHHH
Q 014142 316 GLLSTISAILSGTIGIHYGHVLIH-FKGHSARLKHWVSMGFGLLIIAIIL 364 (430)
Q Consensus 316 GlLstlpai~~~llG~~aG~iL~~-~~~~~~rl~~~l~~G~~ll~lG~ll 364 (430)
|++|.+......+.|+..|++=++ -+...++=+.+...|+++..++.++
T Consensus 9 gi~~~~~~~~~~i~aiilG~ial~~i~r~~~~G~g~A~aGivlG~i~~~~ 58 (62)
T PF13828_consen 9 GILGLFLCGLLGIVAIILGHIALRQIRRSGQRGRGMAIAGIVLGYIGIVL 58 (62)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH
Confidence 344433323455555666655322 1111234445666777776666554
No 23
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=29.95 E-value=99 Score=34.51 Aligned_cols=70 Identities=20% Similarity=0.353 Sum_probs=39.9
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhCCCccccccCCchhHHHHhhhhhhh
Q 014142 312 FEPEGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILHFTNAIPINKQLYSFSYVCFTAGAADG 391 (430)
Q Consensus 312 fDPEGlLstlpai~~~llG~~aG~iL~~~~~~~~rl~~~l~~G~~ll~lG~ll~~~~~~PiNK~LWS~SfVL~TsG~a~~ 391 (430)
.||.-++.-. ...++|+..|- ++-|++++++|+++... ..-.++.+-...+++..+|++..
T Consensus 344 iDPT~~~ai~---f~lfFGmM~gD---------------~GyGLil~l~~~~l~~~-~~k~~~~~~~~~~il~~~gi~si 404 (646)
T PRK05771 344 IDPTPFLAIF---FPLFFGMMLGD---------------AGYGLLLLLIGLLLSFK-LKKKSEGLKRLLKILIYLGISTI 404 (646)
T ss_pred cCCccHHHHH---HHHHHHHHHHh---------------HHHHHHHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHHH
Confidence 5886665432 35566777663 34466666666655432 12234455666777777777775
Q ss_pred hHhHHHHhh
Q 014142 392 CLGITNSIF 400 (430)
Q Consensus 392 ~~~llLa~~ 400 (430)
..|++..=+
T Consensus 405 i~G~lyG~f 413 (646)
T PRK05771 405 IWGLLTGSF 413 (646)
T ss_pred HHHHHHHhH
Confidence 555544433
No 24
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.48 E-value=48 Score=35.32 Aligned_cols=44 Identities=23% Similarity=0.272 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCccccCCCCcceeee--ecCCCCC
Q 014142 214 IGGFIAFVIYIITTYSLYVPNWSFSEHSDHGVKKYIV--KCGMRGH 257 (430)
Q Consensus 214 ~~~~~ll~~Y~~l~~~l~vP~~~~~~~~~~~~~~~~~--~cg~~g~ 257 (430)
.+-..++.-|..++|++-+|+||.+|++|++..+++. .|-..|.
T Consensus 296 ~~~~~~V~~~~~~~~~~~~~~~~r~~~~~~G~~~~~~~P~CnAvGy 341 (549)
T KOG4683|consen 296 AVLLALVATYLGLTFGLRVPGCPRGYLGPGGKHDYNAHPKCNAVGY 341 (549)
T ss_pred HHHHHhhhhhhceecccccCCCCcccccCCcccccCCCCCccchhh
Confidence 3445567778889999999999999999998444442 3543343
No 25
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=24.44 E-value=2.2e+02 Score=24.67 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=16.6
Q ss_pred CcchhhhHH--HHHHHHHHHHhHHHhc
Q 014142 315 EGLLSTISA--ILSGTIGIHYGHVLIH 339 (430)
Q Consensus 315 EGlLstlpa--i~~~llG~~aG~iL~~ 339 (430)
=|++|+|.. ++.+++|+..|++|-+
T Consensus 42 l~~~g~IG~~~v~pil~G~~lG~WLD~ 68 (100)
T TIGR02230 42 LGMFGLIGWSVAIPTLLGVAVGIWLDR 68 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666654 4567888888888843
No 26
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=24.37 E-value=85 Score=23.77 Aligned_cols=32 Identities=9% Similarity=0.254 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHhcccCCCh--hHHHHHHHH
Q 014142 104 VMPFFLFIVGVAIALALKKVPKI--NGAVKKIIF 135 (430)
Q Consensus 104 VfP~FlFivGvSi~ls~~r~~~k--~~~~~kilr 135 (430)
.=|+|-.++|++.++.++++..+ +.....+++
T Consensus 7 lDP~~av~iG~~ayyl~e~R~~rp~g~~L~eLl~ 40 (47)
T PF11654_consen 7 LDPLFAVFIGTSAYYLYENREGRPEGHSLNELLR 40 (47)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCCCcHHHHHH
Confidence 34889999999999999876543 334444443
No 27
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=23.74 E-value=2.1e+02 Score=30.85 Aligned_cols=83 Identities=13% Similarity=0.081 Sum_probs=45.4
Q ss_pred CCcchhhhHHHHHHHHHHHHhHHHhccc--chhHHHHHHHHHHHHHHHHHHHHhhCCCccccccCCc-hhHHHHhhhhhh
Q 014142 314 PEGLLSTISAILSGTIGIHYGHVLIHFK--GHSARLKHWVSMGFGLLIIAIILHFTNAIPINKQLYS-FSYVCFTAGAAD 390 (430)
Q Consensus 314 PEGlLstlpai~~~llG~~aG~iL~~~~--~~~~rl~~~l~~G~~ll~lG~ll~~~~~~PiNK~LWS-~SfVL~TsG~a~ 390 (430)
--|++|.+|-++..+..+.+|.+--.-+ ...++.++-+.-.+.++..|..+-. ++..++-+. .+.+++|.+.++
T Consensus 295 ~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~---l~~~~~~~~~~a~~~l~~~~~~ 371 (466)
T KOG2532|consen 295 ETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLV---LAFTSDEHRLLAVILLTIAIGL 371 (466)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHe---eeecCCCcchHHHHHHHHHHHH
Confidence 4589999999999999999998652211 2333333333344444444443322 344443333 556666655444
Q ss_pred hhHhHHHHhhh
Q 014142 391 GCLGITNSIFI 401 (430)
Q Consensus 391 ~~~~llLa~~y 401 (430)
.|+..+-+|
T Consensus 372 --~g~~~~Gf~ 380 (466)
T KOG2532|consen 372 --SGFNISGFY 380 (466)
T ss_pred --cccchhhhH
Confidence 334444443
No 28
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=23.55 E-value=3.5e+02 Score=25.62 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=13.5
Q ss_pred CccccccCCchhHHHHhhhhhh
Q 014142 369 AIPINKQLYSFSYVCFTAGAAD 390 (430)
Q Consensus 369 ~~PiNK~LWS~SfVL~TsG~a~ 390 (430)
.+|-.-|..=+.++.+..|...
T Consensus 169 ~lp~~inp~l~~~~~iiig~i~ 190 (206)
T PF06570_consen 169 FLPPVINPVLPPWVYIIIGVIA 190 (206)
T ss_pred HccccCCcCCCHHHHHHHHHHH
Confidence 3676666665666666666444
No 29
>PRK12567 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=23.26 E-value=7.1e+02 Score=24.38 Aligned_cols=29 Identities=10% Similarity=0.241 Sum_probs=21.0
Q ss_pred cceehhhHHHHHHHHHHHHHHHHHhhcCC
Q 014142 166 HIRWCGILQRIALVYVVVALIETLTTKRR 194 (430)
Q Consensus 166 ~~Ri~GVLqrIal~Ylv~all~l~~~~~~ 194 (430)
++|-+..|.-+.+-+..+.-+...+++.+
T Consensus 51 d~R~~DTlgE~~Vl~~A~~gv~~ll~~~~ 79 (218)
T PRK12567 51 RNRLYDTLGEVTVFFIAALGVGLLLANEK 79 (218)
T ss_pred ehhchhhhHHHHHHHHHHHHHHHHHcccC
Confidence 47888999999988877666665555443
No 30
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=22.77 E-value=3.3e+02 Score=27.64 Aligned_cols=51 Identities=22% Similarity=0.312 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcccCCCh-hHHHHHHHHHHHHHHHHHHHHhh
Q 014142 99 TLADFVMPFFLFIVGVAIALALKKVPKI-NGAVKKIIFRTLKLLFWGIILQG 149 (430)
Q Consensus 99 t~aDlVfP~FlFivGvSi~ls~~r~~~k-~~~~~kilrRsl~LfllGlll~~ 149 (430)
.+++...|+=+|++|.++...-.+...+ ......++-|.+++=++++.+..
T Consensus 277 ~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~ 328 (385)
T PF03547_consen 277 YLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIGIGIVF 328 (385)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788899999999999987643322212 22333577888888888887654
No 31
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=22.66 E-value=1.5e+02 Score=24.88 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=19.0
Q ss_pred HHHHHHHhHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 014142 327 GTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAI 362 (430)
Q Consensus 327 ~llG~~aG~iL~~~~~~~~rl~~~l~~G~~ll~lG~ 362 (430)
-++|+++|-.+...-....+..+++..|++..++..
T Consensus 36 Ny~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~ 71 (85)
T PF06779_consen 36 NYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLST 71 (85)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 357999998775532222333344445555444433
No 32
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=22.00 E-value=3.2e+02 Score=26.77 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=21.2
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHhHHHh
Q 014142 311 PFEPEGLLSTISAILSGTIGIHYGHVLI 338 (430)
Q Consensus 311 ~fDPEGlLstlpai~~~llG~~aG~iL~ 338 (430)
.+.||+.+.....+..+++|....-...
T Consensus 168 ~~~~e~~l~N~~gl~~~~fg~~V~~~~~ 195 (214)
T cd08764 168 NLPAEGVLGNFIGIVLVIFGGLVVYLVT 195 (214)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3578888888888888888888776554
No 33
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=20.76 E-value=1.1e+02 Score=31.21 Aligned_cols=64 Identities=11% Similarity=0.149 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHH----HHHHHHhhCCCccccccCCchhHHHHhhhhhhhhHhHHHHhhhhhccCcccccccccc
Q 014142 344 SARLKHWVSMGFGLL----IIAIILHFTNAIPINKQLYSFSYVCFTAGAADGCLGITNSIFIPEMDWDECDACFRAW 416 (430)
Q Consensus 344 ~~rl~~~l~~G~~ll----~lG~ll~~~~~~PiNK~LWS~SfVL~TsG~a~~~~~llLa~~y~liD~~~~~~~~~v~ 416 (430)
.+|.++.+..+.... ++-+++++ + ... +...+-. |+.+..+.+.+|.+..+.|+|..|.-+|-.
T Consensus 173 T~kf~~iv~~a~~gi~~~~Lv~~vl~l---f-~~~-l~~~gpl----gI~~slv~v~iAa~sLllDFd~Ie~~v~~g 240 (274)
T PF12811_consen 173 TPKFRRIVMIATFGIALFYLVNLVLSL---F-VGS-LRDGGPL----GIGFSLVVVGIAALSLLLDFDFIEQGVRQG 240 (274)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH---H-Hhh-cccCChH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHcC
Confidence 345555554333332 33444443 2 111 7776643 333333558899999999999888766643
Done!