Query 014142
Match_columns 430
No_of_seqs 195 out of 684
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 06:13:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n2f_G Na+/K+ ATPase gamma sub 20.4 21 0.00071 23.8 -0.1 28 92-119 4-31 (31)
2 2jo1_A Phospholemman; FXYD1, N 15.0 99 0.0034 24.2 2.6 30 92-121 10-39 (72)
3 2jp3_A FXYD domain-containing 13.3 96 0.0033 24.0 2.1 30 92-121 11-40 (67)
4 1qle_C Cytochrome C oxidase po 11.9 6E+02 0.021 24.1 7.8 45 342-386 166-214 (273)
5 2zxe_G FXYD10, phospholemman-l 11.7 96 0.0033 24.5 1.7 30 92-121 13-42 (74)
6 1m56_C Cytochrome C oxidase; m 10.3 8.7E+02 0.03 22.8 8.3 45 342-386 159-207 (266)
7 2ks1_B Epidermal growth factor 9.3 3.8E+02 0.013 18.8 4.0 29 168-196 13-41 (44)
8 1jb0_J Photosystem 1 reaction 9.1 2.3E+02 0.008 19.9 2.7 22 317-338 7-28 (41)
9 1v54_C Cytochrome C oxidase po 9.0 7.4E+02 0.025 23.2 7.2 45 342-386 154-202 (261)
10 2l2t_A Receptor tyrosine-prote 8.8 4E+02 0.014 18.8 3.9 29 168-196 12-40 (44)
No 1
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=20.36 E-value=21 Score=23.76 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=22.5
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHh
Q 014142 92 HSPWNGCTLADFVMPFFLFIVGVAIALA 119 (430)
Q Consensus 92 Ha~W~G~t~aDlVfP~FlFivGvSi~ls 119 (430)
|-+|+++....+++-..+|++|+.+.+|
T Consensus 4 ~yDy~tLrigGLi~a~vLfi~gi~iils 31 (31)
T 3n2f_G 4 YYDYETVRNGGLIFAALAFIVGLIIILS 31 (31)
T ss_dssp CCCHHHHHHHHTTTHHHHHHHHHHHHTC
T ss_pred CCChHHHhhcchhHHHHHHHHHHHHhcC
Confidence 4567777888888889999999988765
No 2
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=14.99 E-value=99 Score=24.25 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=26.0
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 014142 92 HSPWNGCTLADFVMPFFLFIVGVAIALALK 121 (430)
Q Consensus 92 Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~ 121 (430)
|-+|+.+...-|+|-..+|++|+.+.+|-+
T Consensus 10 ~YDY~tLRiGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 10 TYDYQSLQIGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp GCSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHhhccchHHHHHHHHHHHHHHHcCc
Confidence 456777888899999999999999999975
No 3
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=13.29 E-value=96 Score=24.04 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=25.9
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 014142 92 HSPWNGCTLADFVMPFFLFIVGVAIALALK 121 (430)
Q Consensus 92 Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~ 121 (430)
|-+|+.+...-|+|-..+|++|+.+.+|-+
T Consensus 11 ~YDY~tLRigGLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 11 YYDWESLQLGGLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred ccchHHheecchhhHHHHHHHHHHHHHcCc
Confidence 456777888899999999999999999974
No 4
>1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.25.1.1
Probab=11.90 E-value=6e+02 Score=24.07 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=28.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHh---hC-CCccccccCCchhHHHHhh
Q 014142 342 GHSARLKHWVSMGFGLLIIAIILH---FT-NAIPINKQLYSFSYVCFTA 386 (430)
Q Consensus 342 ~~~~rl~~~l~~G~~ll~lG~ll~---~~-~~~PiNK~LWS~SfVL~Ts 386 (430)
+++++.+.++...+++.+....+. +. ..+-++.+.+.++|-+.|+
T Consensus 166 ~~~~~~~~~L~~Ti~LG~~F~~lQ~~Ey~~~~f~~~~~~ygS~ff~lTG 214 (273)
T 1qle_C 166 GDRKTTINGLIVAVILGVCFTGLQAYEYSHAAFGLADTVYAGAFYMATG 214 (273)
T ss_dssp CCHHHHHHHTHHHHTHHHHHHHHHHHHGGGCSCCSSSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 445566677777666655555543 21 2366788888888877664
No 5
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=11.71 E-value=96 Score=24.49 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=26.2
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 014142 92 HSPWNGCTLADFVMPFFLFIVGVAIALALK 121 (430)
Q Consensus 92 Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~ 121 (430)
|-+|+.+...-|+|-..+|++|+.+.+|-+
T Consensus 13 ~YDY~tLRigGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 13 TYDYYRLRVVGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccchHHheeccchhHHHHHHHHHHHHHcCc
Confidence 456777888999999999999999999975
No 6
>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.25.1.1 PDB: 1m57_C*
Probab=10.34 E-value=8.7e+02 Score=22.80 Aligned_cols=45 Identities=9% Similarity=0.190 Sum_probs=28.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhh---C-CCccccccCCchhHHHHhh
Q 014142 342 GHSARLKHWVSMGFGLLIIAIILHF---T-NAIPINKQLYSFSYVCFTA 386 (430)
Q Consensus 342 ~~~~rl~~~l~~G~~ll~lG~ll~~---~-~~~PiNK~LWS~SfVL~Ts 386 (430)
+++++.+.++...+++.+....+.. . ..+-++.+.+.++|-+.|+
T Consensus 159 ~~~~~~~~~L~~Ti~LG~~F~~lQ~~Ey~~~~f~~~~~~ygS~ff~lTG 207 (266)
T 1m56_C 159 NNRRDVAWGLALAIALGALFTVFQAYEYSHAAFGFAGNIYGANFFMATG 207 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCSSSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 4455666777776666555555432 1 2466788888888877764
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=9.30 E-value=3.8e+02 Score=18.85 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=19.6
Q ss_pred eehhhHHHHHHHHHHHHHHHHHhhcCCCC
Q 014142 168 RWCGILQRIALVYVVVALIETLTTKRRPN 196 (430)
Q Consensus 168 Ri~GVLqrIal~Ylv~all~l~~~~~~~~ 196 (430)
.--||..-+++.-+++.+++++.++++.+
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 45678877776666666667777776543
No 8
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=9.07 E-value=2.3e+02 Score=19.88 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=19.0
Q ss_pred chhhhHHHHHHHHHHHHhHHHh
Q 014142 317 LLSTISAILSGTIGIHYGHVLI 338 (430)
Q Consensus 317 lLstlpai~~~llG~~aG~iL~ 338 (430)
-|||-|-+++..+++.||-++.
T Consensus 7 yLstAPVla~~w~~~tAg~lIE 28 (41)
T 1jb0_J 7 YLSTAPVLAAIWMTITAGILIE 28 (41)
T ss_dssp HTTBHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHH
Confidence 3799999999999999997763
No 9
>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C* 2eil_C* 2eim_C* 2ein_C* 2y69_C* 2ybb_N* 2zxw_C* 3abk_C* 3abl_C* 3abm_C* 3ag1_C* 3ag2_C* 3ag3_C* 3ag4_C* 3asn_C* 3aso_C* 2occ_C* ...
Probab=8.97 E-value=7.4e+02 Score=23.18 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=28.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhh---C-CCccccccCCchhHHHHhh
Q 014142 342 GHSARLKHWVSMGFGLLIIAIILHF---T-NAIPINKQLYSFSYVCFTA 386 (430)
Q Consensus 342 ~~~~rl~~~l~~G~~ll~lG~ll~~---~-~~~PiNK~LWS~SfVL~Ts 386 (430)
+++++.+.++...+++.+....+.. . ..+-++.+.+.++|-+.|+
T Consensus 154 ~~~~~~~~~L~~T~~LG~~F~~~Q~~Ey~~~~f~~~~~~ygS~ff~lTG 202 (261)
T 1v54_C 154 GDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATG 202 (261)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH
Confidence 4455666777766666555554432 1 2356788888888877664
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=8.78 E-value=4e+02 Score=18.84 Aligned_cols=29 Identities=7% Similarity=0.162 Sum_probs=19.1
Q ss_pred eehhhHHHHHHHHHHHHHHHHHhhcCCCC
Q 014142 168 RWCGILQRIALVYVVVALIETLTTKRRPN 196 (430)
Q Consensus 168 Ri~GVLqrIal~Ylv~all~l~~~~~~~~ 196 (430)
.--||..-+++.-+++.+.+++.++++.+
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence 45577776666666666666777776543
Done!