Query 014142
Match_columns 430
No_of_seqs 195 out of 684
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 06:13:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014142.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014142hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54c_ f.25.1.1 (C:) Mitochon 17.1 1.6E+02 0.012 25.4 7.7 75 311-386 121-200 (259)
2 d1m56c_ f.25.1.1 (C:) Bacteria 14.8 2E+02 0.014 24.8 7.7 18 369-386 189-206 (265)
3 d1jb0j_ f.23.18.1 (J:) Subunit 13.6 64 0.0046 21.0 2.7 21 317-337 7-27 (41)
4 d1fftc_ f.25.1.1 (C:) Cytochro 7.3 2.3E+02 0.017 22.7 4.9 45 342-386 75-126 (185)
5 d2r6gf2 f.58.1.1 (F:261-504) M 6.6 2.3E+02 0.017 23.3 4.7 33 319-351 28-60 (244)
6 d2onkc1 f.58.1.1 (C:1-252) Mol 6.6 1.9E+02 0.014 23.7 4.1 31 318-348 57-87 (252)
7 d3d31c1 f.58.1.1 (C:13-260) Su 5.4 3E+02 0.022 22.3 4.6 34 317-350 54-87 (248)
8 d1pw4a_ f.38.1.1 (A:) Glycerol 5.1 5.1E+02 0.037 21.5 6.2 24 316-339 288-311 (447)
9 d1pw4a_ f.38.1.1 (A:) Glycerol 5.0 4.5E+02 0.033 21.9 5.7 25 315-339 61-85 (447)
10 d1axda1 a.45.1.1 (A:81-210) Cl 4.8 87 0.0063 23.1 0.5 23 90-112 69-95 (129)
No 1
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=17.07 E-value=1.6e+02 Score=25.44 Aligned_cols=75 Identities=12% Similarity=0.215 Sum_probs=43.7
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHhHHHhc-ccchhHHHHHHHHHHHHHHHHHHHHhh----CCCccccccCCchhHHHHh
Q 014142 311 PFEPEGLLSTISAILSGTIGIHYGHVLIH-FKGHSARLKHWVSMGFGLLIIAIILHF----TNAIPINKQLYSFSYVCFT 385 (430)
Q Consensus 311 ~fDPEGlLstlpai~~~llG~~aG~iL~~-~~~~~~rl~~~l~~G~~ll~lG~ll~~----~~~~PiNK~LWS~SfVL~T 385 (430)
+.||.+ +..+++++...-|+.+..-... .++.+++.++++...+++.++...... ...+.++.+.+.++|-+.|
T Consensus 121 ~~~~~~-lpllnT~vLl~Ss~t~~~A~~~~~~~~~~~~~~~l~~t~~lg~~Fl~~q~~Ey~~~~~~~~~~~~gS~ff~lT 199 (259)
T d1v54c_ 121 PLNPLE-VPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVAT 199 (259)
T ss_dssp CCCTTS-HHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHHH
T ss_pred ccchhh-hHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCcchHHHHHH
Confidence 345554 3455555666666654433322 234455666777766666655554431 1246778888988887777
Q ss_pred h
Q 014142 386 A 386 (430)
Q Consensus 386 s 386 (430)
+
T Consensus 200 G 200 (259)
T d1v54c_ 200 G 200 (259)
T ss_dssp H
T ss_pred H
Confidence 5
No 2
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=14.80 E-value=2e+02 Score=24.76 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=14.6
Q ss_pred CccccccCCchhHHHHhh
Q 014142 369 AIPINKQLYSFSYVCFTA 386 (430)
Q Consensus 369 ~~PiNK~LWS~SfVL~Ts 386 (430)
...++-+.+.++|-+.|+
T Consensus 189 ~~~~~~~~~gs~ff~lTG 206 (265)
T d1m56c_ 189 AFGFAGNIYGANFFMATG 206 (265)
T ss_dssp SSCSSSSHHHHHHHHHHH
T ss_pred CCCcccchhHHHHHHHHH
Confidence 577888999998888775
No 3
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=13.56 E-value=64 Score=21.02 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=18.8
Q ss_pred chhhhHHHHHHHHHHHHhHHH
Q 014142 317 LLSTISAILSGTIGIHYGHVL 337 (430)
Q Consensus 317 lLstlpai~~~llG~~aG~iL 337 (430)
-|||-|-+++..+++.||-++
T Consensus 7 ylstAPVla~~w~~~tAG~lI 27 (41)
T d1jb0j_ 7 YLSTAPVLAAIWMTITAGILI 27 (41)
T ss_dssp HTTBHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHH
Confidence 379999999999999999776
No 4
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=7.29 E-value=2.3e+02 Score=22.73 Aligned_cols=45 Identities=9% Similarity=0.256 Sum_probs=25.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH---hh----CCCccccccCCchhHHHHhh
Q 014142 342 GHSARLKHWVSMGFGLLIIAIIL---HF----TNAIPINKQLYSFSYVCFTA 386 (430)
Q Consensus 342 ~~~~rl~~~l~~G~~ll~lG~ll---~~----~~~~PiNK~LWS~SfVL~Ts 386 (430)
+.+++.+.++...+++.++-+.. .+ ...+..+-+.+.+.|-++|+
T Consensus 75 ~~~~~~~~~L~~t~~lG~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~fy~lTG 126 (185)
T d1fftc_ 75 NNKSQVISWLALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVG 126 (185)
T ss_dssp CCGGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSCCCCSTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHcccccccccchhhHHHHHH
Confidence 34455566665555443333222 11 12467788888888877664
No 5
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=6.61 E-value=2.3e+02 Score=23.28 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHhHHHhcccchhHHHHHHH
Q 014142 319 STISAILSGTIGIHYGHVLIHFKGHSARLKHWV 351 (430)
Q Consensus 319 stlpai~~~llG~~aG~iL~~~~~~~~rl~~~l 351 (430)
+.+..+.++.+|+..+..+.+.+.+.++..+.+
T Consensus 28 ~~~~~~~~~~~~~~lA~~l~~~~~~~~~~~~~~ 60 (244)
T d2r6gf2 28 SLITVFLTVAVGMVLACLVQWEALRGKAVYRVL 60 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHH
Confidence 444555667777777777755444444444433
No 6
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.56 E-value=1.9e+02 Score=23.70 Aligned_cols=31 Identities=13% Similarity=0.106 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHHHHHhHHHhcccchhHHHH
Q 014142 318 LSTISAILSGTIGIHYGHVLIHFKGHSARLK 348 (430)
Q Consensus 318 Lstlpai~~~llG~~aG~iL~~~~~~~~rl~ 348 (430)
.+.+.++.++++|+..+-.+.+.+...++..
T Consensus 57 ~~~~~~~i~~i~g~~la~~l~~~~~~~~~~~ 87 (252)
T d2onkc1 57 AALISTLIAVIFGTPLAYILARKSFPGKSVV 87 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 5677777888899999887765544444433
No 7
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=5.41 E-value=3e+02 Score=22.27 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=23.4
Q ss_pred chhhhHHHHHHHHHHHHhHHHhcccchhHHHHHH
Q 014142 317 LLSTISAILSGTIGIHYGHVLIHFKGHSARLKHW 350 (430)
Q Consensus 317 lLstlpai~~~llG~~aG~iL~~~~~~~~rl~~~ 350 (430)
..+.++++.++++|+..+..+.+.+...+|..+.
T Consensus 54 ~~a~~s~~i~~~lg~~~a~~~~~~~~~~~~~~~~ 87 (248)
T d3d31c1 54 YAGFLATLLALLLGAPTGYILARFDFPGKRLVES 87 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHH
Confidence 3577778888899999998876555444444443
No 8
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=5.05 E-value=5.1e+02 Score=21.52 Aligned_cols=24 Identities=4% Similarity=-0.187 Sum_probs=13.6
Q ss_pred cchhhhHHHHHHHHHHHHhHHHhc
Q 014142 316 GLLSTISAILSGTIGIHYGHVLIH 339 (430)
Q Consensus 316 GlLstlpai~~~llG~~aG~iL~~ 339 (430)
+.+.++..+..++..+..|.+..+
T Consensus 288 ~~~~~~~~~~~~~~~~~~g~~~~~ 311 (447)
T d1pw4a_ 288 SWAYFLYEYAGIPGTLLCGWMSDK 311 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcchhhhhhhhhhhhhhhhh
Confidence 455666666665555555655543
No 9
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.98 E-value=4.5e+02 Score=21.92 Aligned_cols=25 Identities=20% Similarity=0.060 Sum_probs=19.8
Q ss_pred CcchhhhHHHHHHHHHHHHhHHHhc
Q 014142 315 EGLLSTISAILSGTIGIHYGHVLIH 339 (430)
Q Consensus 315 EGlLstlpai~~~llG~~aG~iL~~ 339 (430)
-|++.++..++.++.....|.+.-+
T Consensus 61 ~g~~~s~~~~~~~~~~~~~G~l~Dr 85 (447)
T d1pw4a_ 61 LGFALSGISIAYGFSKFIMGSVSDR 85 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888888888888877643
No 10
>d1axda1 a.45.1.1 (A:81-210) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]}
Probab=4.84 E-value=87 Score=23.08 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=16.0
Q ss_pred ccccCC---CCchhhHH-HHHHHHHHH
Q 014142 90 IDHSPW---NGCTLADF-VMPFFLFIV 112 (430)
Q Consensus 90 l~Ha~W---~G~t~aDl-VfP~FlFiv 112 (430)
+.+.+| +.+|++|+ ++|.+..+.
T Consensus 69 L~~~~~l~Gd~~TlADi~~~~~~~~~~ 95 (129)
T d1axda1 69 LTKCKYLAGDFLSLADLNHVSVTLCLF 95 (129)
T ss_dssp HHHCSSSSSSSCCHHHHTTHHHHHHHT
T ss_pred HccccccccCccccccHHHHHHHHHHH
Confidence 445566 55899999 577776654
Done!