BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014143
(430 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W207|CSN2_ARATH COP9 signalosome complex subunit 2 OS=Arabidopsis thaliana GN=CSN2
PE=1 SV=1
Length = 439
Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/405 (87%), Positives = 381/405 (94%)
Query: 25 KGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84
KG+VET+PE AL+GFAEVV MEPEKA+WGFKALKQTVK+YYRLGKYKEMM+AY EMLTYI
Sbjct: 34 KGMVETEPEEALSGFAEVVQMEPEKADWGFKALKQTVKIYYRLGKYKEMMEAYTEMLTYI 93
Query: 85 KSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCK 144
KSAVTRNYSEKCINNIMDFVSGSASQN LL+EFYQTTLKALEEAKNERLWFKTNLKLC
Sbjct: 94 KSAVTRNYSEKCINNIMDFVSGSASQNTGLLQEFYQTTLKALEEAKNERLWFKTNLKLCN 153
Query: 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL 204
IWFD+GEY RM+KILKELHKSCQ+EDGTDDQKKGSQLLEVYAIEIQ+YTETK+NKKLKQL
Sbjct: 154 IWFDIGEYRRMTKILKELHKSCQKEDGTDDQKKGSQLLEVYAIEIQIYTETKDNKKLKQL 213
Query: 205 YQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL 264
Y KALAIKSAIPHPRIMGIIRECGGKMHMAERQW +AATDFFEAFKNYDEAGNQRRIQCL
Sbjct: 214 YHKALAIKSAIPHPRIMGIIRECGGKMHMAERQWEEAATDFFEAFKNYDEAGNQRRIQCL 273
Query: 265 KYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTI 324
KYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFE+ILKSNR+TI
Sbjct: 274 KYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFERILKSNRRTI 333
Query: 325 MDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNR 384
MDDPFIRNY+EDLLK VRTQVLLKLIKPYT+I IPFISKELNVPE DV +LLVSLILD+R
Sbjct: 334 MDDPFIRNYMEDLLKKVRTQVLLKLIKPYTKIGIPFISKELNVPETDVTELLVSLILDSR 393
Query: 385 IDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSLYQTVSNRV 429
IDGHID++NR L RGD G K + A+DKWNSQL+SL +++RV
Sbjct: 394 IDGHIDEMNRYLLRGDSGNGRKLHKAVDKWNSQLKSLSSNITSRV 438
>sp|Q6IR75|CSN2_XENLA COP9 signalosome complex subunit 2 (Fragment) OS=Xenopus laevis
GN=csn2 PE=2 SV=1
Length = 441
Score = 567 bits (1461), Expect = e-161, Method: Compositional matrix adjust.
Identities = 266/406 (65%), Positives = 333/406 (82%), Gaps = 2/406 (0%)
Query: 25 KGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84
K L E DP+ AL+ F +V+ +E EK EWGFKALKQ +K+ ++LG Y EMM+ Y+++LTYI
Sbjct: 38 KALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINFKLGNYPEMMNRYKQLLTYI 97
Query: 85 KSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCK 144
+SAVTRNYSEK IN+I+D++S S+ LL+EFY+TTL AL++AKN+RLWFKTN KL K
Sbjct: 98 RSAVTRNYSEKSINSILDYIS--TSKQMDLLQEFYETTLDALKDAKNDRLWFKTNTKLGK 155
Query: 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL 204
++ + EYG++ KIL++LH+SCQ +DG DD KKG+QLLE+YA+EIQMYT KNNKKLK L
Sbjct: 156 LYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKAL 215
Query: 205 YQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL 264
Y+++L IKSAIPHP IMG+IRECGGKMH+ E ++ A TDFFEAFKNYDE+G+ RR CL
Sbjct: 216 YEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCL 275
Query: 265 KYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTI 324
KYLVLANMLM+S +NPFD QEAKPYKNDPEILAMTNL++AYQ N+I EFEKILK+N I
Sbjct: 276 KYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNI 335
Query: 325 MDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNR 384
MDDPFIR +IE+LL+N+RTQVL+KLIKPYTRI IPFISKELN+ DVE LLV ILDN
Sbjct: 336 MDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNT 395
Query: 385 IDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSLYQTVSNRVS 430
I G IDQVN+LLE + +G +YTA+DKW +QL SL Q V ++++
Sbjct: 396 IHGRIDQVNQLLELDHQKRGGARYTALDKWTNQLNSLNQAVVSKLA 441
>sp|P61203|CSN2_RAT COP9 signalosome complex subunit 2 OS=Rattus norvegicus GN=Cops2
PE=2 SV=1
Length = 443
Score = 563 bits (1452), Expect = e-160, Method: Compositional matrix adjust.
Identities = 264/406 (65%), Positives = 333/406 (82%), Gaps = 2/406 (0%)
Query: 25 KGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84
K L E DP+ AL+ F +V+ +E EK EWGFKALKQ +K+ ++L + EMM+ Y+++LTYI
Sbjct: 40 KALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYI 99
Query: 85 KSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCK 144
+SAVTRNYSEK IN+I+D++S S+ LL+EFY+TTL+AL++AKN+RLWFKTN KL K
Sbjct: 100 RSAVTRNYSEKSINSILDYIS--TSKQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGK 157
Query: 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL 204
++ + EYG++ KIL++LH+SCQ +DG DD KKG+QLLE+YA+EIQMYT KNNKKLK L
Sbjct: 158 LYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKAL 217
Query: 205 YQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL 264
Y+++L IKSAIPHP IMG+IRECGGKMH+ E ++ A TDFFEAFKNYDE+G+ RR CL
Sbjct: 218 YEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCL 277
Query: 265 KYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTI 324
KYLVLANMLM+S +NPFD QEAKPYKNDPEILAMTNL++AYQ N+I EFEKILK+N I
Sbjct: 278 KYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNI 337
Query: 325 MDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNR 384
MDDPFIR +IE+LL+N+RTQVL+KLIKPYTRI IPFISKELN+ DVE LLV ILDN
Sbjct: 338 MDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNT 397
Query: 385 IDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSLYQTVSNRVS 430
I G IDQVN+LLE + +G +YTA+DKW +QL SL Q V ++++
Sbjct: 398 IHGRIDQVNQLLELDHQKRGGARYTALDKWTNQLNSLNQAVVSKLA 443
>sp|P61202|CSN2_MOUSE COP9 signalosome complex subunit 2 OS=Mus musculus GN=Cops2 PE=1
SV=1
Length = 443
Score = 563 bits (1452), Expect = e-160, Method: Compositional matrix adjust.
Identities = 264/406 (65%), Positives = 333/406 (82%), Gaps = 2/406 (0%)
Query: 25 KGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84
K L E DP+ AL+ F +V+ +E EK EWGFKALKQ +K+ ++L + EMM+ Y+++LTYI
Sbjct: 40 KALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYI 99
Query: 85 KSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCK 144
+SAVTRNYSEK IN+I+D++S S+ LL+EFY+TTL+AL++AKN+RLWFKTN KL K
Sbjct: 100 RSAVTRNYSEKSINSILDYIS--TSKQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGK 157
Query: 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL 204
++ + EYG++ KIL++LH+SCQ +DG DD KKG+QLLE+YA+EIQMYT KNNKKLK L
Sbjct: 158 LYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKAL 217
Query: 205 YQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL 264
Y+++L IKSAIPHP IMG+IRECGGKMH+ E ++ A TDFFEAFKNYDE+G+ RR CL
Sbjct: 218 YEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCL 277
Query: 265 KYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTI 324
KYLVLANMLM+S +NPFD QEAKPYKNDPEILAMTNL++AYQ N+I EFEKILK+N I
Sbjct: 278 KYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNI 337
Query: 325 MDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNR 384
MDDPFIR +IE+LL+N+RTQVL+KLIKPYTRI IPFISKELN+ DVE LLV ILDN
Sbjct: 338 MDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNT 397
Query: 385 IDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSLYQTVSNRVS 430
I G IDQVN+LLE + +G +YTA+DKW +QL SL Q V ++++
Sbjct: 398 IHGRIDQVNQLLELDHQKRGGARYTALDKWTNQLNSLNQAVVSKLA 443
>sp|P61201|CSN2_HUMAN COP9 signalosome complex subunit 2 OS=Homo sapiens GN=COPS2 PE=1
SV=1
Length = 443
Score = 563 bits (1452), Expect = e-160, Method: Compositional matrix adjust.
Identities = 264/406 (65%), Positives = 333/406 (82%), Gaps = 2/406 (0%)
Query: 25 KGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84
K L E DP+ AL+ F +V+ +E EK EWGFKALKQ +K+ ++L + EMM+ Y+++LTYI
Sbjct: 40 KALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYI 99
Query: 85 KSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCK 144
+SAVTRNYSEK IN+I+D++S S+ LL+EFY+TTL+AL++AKN+RLWFKTN KL K
Sbjct: 100 RSAVTRNYSEKSINSILDYIS--TSKQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGK 157
Query: 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL 204
++ + EYG++ KIL++LH+SCQ +DG DD KKG+QLLE+YA+EIQMYT KNNKKLK L
Sbjct: 158 LYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKAL 217
Query: 205 YQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL 264
Y+++L IKSAIPHP IMG+IRECGGKMH+ E ++ A TDFFEAFKNYDE+G+ RR CL
Sbjct: 218 YEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCL 277
Query: 265 KYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTI 324
KYLVLANMLM+S +NPFD QEAKPYKNDPEILAMTNL++AYQ N+I EFEKILK+N I
Sbjct: 278 KYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNI 337
Query: 325 MDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNR 384
MDDPFIR +IE+LL+N+RTQVL+KLIKPYTRI IPFISKELN+ DVE LLV ILDN
Sbjct: 338 MDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNT 397
Query: 385 IDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSLYQTVSNRVS 430
I G IDQVN+LLE + +G +YTA+DKW +QL SL Q V ++++
Sbjct: 398 IHGRIDQVNQLLELDHQKRGGARYTALDKWTNQLNSLNQAVVSKLA 443
>sp|Q6IQT4|CSN2_DANRE COP9 signalosome complex subunit 2 OS=Danio rerio GN=cops2 PE=2
SV=1
Length = 443
Score = 562 bits (1448), Expect = e-159, Method: Compositional matrix adjust.
Identities = 262/406 (64%), Positives = 334/406 (82%), Gaps = 2/406 (0%)
Query: 25 KGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84
K L E DP+ AL+ F +V+ +E EK EWGFKALKQ +K+ ++L + EMM+ Y+++LTYI
Sbjct: 40 KALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYI 99
Query: 85 KSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCK 144
+SAVTRNYSEK IN+I+D++S S+ LL+EFY+TTL+AL++AKN+RLWFKTN KL K
Sbjct: 100 RSAVTRNYSEKSINSILDYIS--TSKQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGK 157
Query: 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL 204
++ + E+G++ KIL++LH+SCQ +DG DD KKG+QLLE+YA+EIQMYT KNNKKLK L
Sbjct: 158 LYLEREEFGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKAL 217
Query: 205 YQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL 264
Y+++L IKSAIPHP IMG+IRECGGKMH+ E ++ A TDFFEAFKNYDE+G+ RR CL
Sbjct: 218 YEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCL 277
Query: 265 KYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTI 324
KYLVLANMLM+S +NPFD QEAKPYKNDPEILAMTNL++AYQ N+I EFEKILK+N I
Sbjct: 278 KYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNI 337
Query: 325 MDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNR 384
MDDPFIR +IE+LL+N+RTQVL+KLIKPYTRI IPFISKELN+ DVE LLV ILDN
Sbjct: 338 MDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNT 397
Query: 385 IDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSLYQTVSNRVS 430
I+G IDQVN+LLE + +G +YTA+DKW +QL SL Q + ++++
Sbjct: 398 INGRIDQVNQLLELDHQKRGGARYTALDKWTNQLNSLNQAIVSKLA 443
>sp|Q54HL6|CSN2_DICDI COP9 signalosome complex subunit 2 OS=Dictyostelium discoideum
GN=csn2 PE=1 SV=1
Length = 449
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 263/407 (64%), Positives = 328/407 (80%), Gaps = 2/407 (0%)
Query: 25 KGLVETDPEGALAGFAEVVAME-PEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83
KGL++ A+ + +VV +E EK EWGFKALK+ KLY+R+G + M++++++ L Y
Sbjct: 41 KGLIDESIPDAIKSYEKVVDLENGEKGEWGFKALKKITKLYFRIGDFDNMLESFKKFLPY 100
Query: 84 IKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLC 143
KS+ + NY EK IN+++D VS S + ++++ + TLK+L + KNER+WF+TNLKL
Sbjct: 101 TKSSASSNYIEKGINSVLDMVSSSNTIELDMIQKVFDLTLKSLLDTKNERVWFRTNLKLA 160
Query: 144 KIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQ 203
K+ F+ EYGR++KIL++LHKSC+ EDGTDDQKKGSQL+++YA+EIQMYTETKNNKKLK
Sbjct: 161 KLLFEKAEYGRLAKILRDLHKSCELEDGTDDQKKGSQLVDIYALEIQMYTETKNNKKLKD 220
Query: 204 LYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQC 263
LY+KAL IKSAIPHPRIMGIIRECGGKMHMAE++W A TDFFEAFKNYDEAGN RRIQC
Sbjct: 221 LYKKALEIKSAIPHPRIMGIIRECGGKMHMAEKEWEKAHTDFFEAFKNYDEAGNSRRIQC 280
Query: 264 LKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKT 323
LKYLVLA MLM S +NPFD EAKPYKNDP+ILAMTNL+ AY++N+I FEKILK NRKT
Sbjct: 281 LKYLVLACMLMLSTINPFDSTEAKPYKNDPDILAMTNLVMAYEKNDIYAFEKILKDNRKT 340
Query: 324 IMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDN 383
IMDDPFIR YIEDLL+N+RTQVLLKL+KPYTRIRI FISKELN+P DVE LLVSLILDN
Sbjct: 341 IMDDPFIRMYIEDLLRNIRTQVLLKLLKPYTRIRISFISKELNIPSSDVESLLVSLILDN 400
Query: 384 RIDGHIDQVNRLLERGD-RSKGMKKYTAIDKWNSQLRSLYQTVSNRV 429
+I G IDQVN+ LE +S KYT+I KW +Q+ L ++N++
Sbjct: 401 KIRGSIDQVNQQLELDTAKSSAYWKYTSIHKWANQIGQLNGGINNKL 447
>sp|Q94899|CSN2_DROME COP9 signalosome complex subunit 2 OS=Drosophila melanogaster
GN=alien PE=1 SV=2
Length = 444
Score = 519 bits (1336), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/407 (60%), Positives = 321/407 (78%), Gaps = 3/407 (0%)
Query: 25 KGLVETDPEGALAGFAEVVAME-PEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83
K L E +P+ ALA F +V+ +E EK EWGFKALKQ +K+ +RL Y EMM Y+++LTY
Sbjct: 40 KALKEEEPKAALASFQKVLDLENGEKGEWGFKALKQMIKINFRLCNYDEMMVRYKQLLTY 99
Query: 84 IKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLC 143
IKSAVTRN+SEK IN+I+D++S S+N +LL+ FY+TTL AL +AKN+RLWFKTN KL
Sbjct: 100 IKSAVTRNHSEKSINSILDYIS--TSKNMALLQNFYETTLDALRDAKNDRLWFKTNTKLG 157
Query: 144 KIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQ 203
K++FD ++ ++ KILK+LH+SCQ +DG DD KKG+QLLE+YA+EIQMYT KNNKKLK
Sbjct: 158 KLYFDRSDFTKLQKILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTVQKNNKKLKA 217
Query: 204 LYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQC 263
LY+++L IKSAIPHP IMG+IRECGGKMH+ E ++ A TDFFEAFKNYDE+G+ RR C
Sbjct: 218 LYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTC 277
Query: 264 LKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKT 323
LKYLVLANMLM+S +NPFD QEAKPYKNDPEILAMTNL+ +YQ N+I EFE IL+ +R
Sbjct: 278 LKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVNSYQNNDINEFETILRQHRSN 337
Query: 324 IMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDN 383
IM D FIR +IEDLL+N+RTQVL+KLI+PY I IPFI+ LN+ +VE LLVS ILD+
Sbjct: 338 IMADQFIREHIEDLLRNIRTQVLIKLIRPYKNIAIPFIANALNIEPAEVESLLVSCILDD 397
Query: 384 RIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSLYQTVSNRVS 430
I G IDQVN++L+ + +Y A++KW++Q++SL V +++
Sbjct: 398 TIKGRIDQVNQVLQLDKINSSASRYNALEKWSNQIQSLQFAVVQKMA 444
>sp|Q5B3U7|CSN2_EMENI COP9 signalosome complex subunit 2 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnB PE=1 SV=2
Length = 506
Score = 445 bits (1145), Expect = e-124, Method: Compositional matrix adjust.
Identities = 205/401 (51%), Positives = 295/401 (73%), Gaps = 12/401 (2%)
Query: 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR 90
+PE A+ F V A+E +K +WGFK LKQ +KL ++LG+Y + ++ YRE+LTY+KSAVTR
Sbjct: 47 NPEEAIDEFLGVPALEQDKGDWGFKGLKQAIKLEFKLGRYSDAVEHYRELLTYVKSAVTR 106
Query: 91 NYSEKCINNIMDFVS-GSASQN-FSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD 148
NYSEK INN++D++ GS + + + EFY TL + + NERLW KTN+KL ++W +
Sbjct: 107 NYSEKSINNMLDYIEKGSDDEKAYQCMEEFYSLTLNSFQNTNNERLWLKTNIKLARLWLE 166
Query: 149 MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208
EYG++SK ++ELH++CQREDG+DD KG+ LLE+YA+EIQMY ETKNNK+LK LYQ+A
Sbjct: 167 RREYGQLSKKVRELHRACQREDGSDDPSKGTYLLELYALEIQMYAETKNNKRLKALYQRA 226
Query: 209 LAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLV 268
L ++SA+PHP+IMGIIRECGGKMHM+E W +A +DFFE+F+NYDEAG+ +RIQ LKYLV
Sbjct: 227 LRVRSAVPHPKIMGIIRECGGKMHMSEENWEEAQSDFFESFRNYDEAGSMQRIQVLKYLV 286
Query: 269 LANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDP 328
L MLM+S++NPF QE KPYK DP I AMT+L+ A+QR++I +E++L N ++ DP
Sbjct: 287 LTTMLMKSDINPFHSQETKPYKTDPRISAMTDLVDAFQRDDIHAYEEVLSKN-PDVLADP 345
Query: 329 FIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388
FI I+++ +N+RT+ +LKLI PYTR + FISK + + + + +L LILD +++
Sbjct: 346 FIAENIDEVSRNMRTKAILKLIAPYTRFTLSFISKHIKISVTEAQDILSFLILDKKLNAK 405
Query: 389 IDQVNRLLERG----DRSKGMKKYTAIDKWNSQLRSLYQTV 425
IDQ E G + + +++ ++++WN LR+L+Q
Sbjct: 406 IDQ-----ESGTVVVESASDVERLRSVEEWNESLRTLWQVT 441
>sp|O01422|CSN2_CAEEL COP9 signalosome complex subunit 2 OS=Caenorhabditis elegans
GN=csn-2 PE=1 SV=2
Length = 495
Score = 444 bits (1143), Expect = e-124, Method: Compositional matrix adjust.
Identities = 208/374 (55%), Positives = 293/374 (78%), Gaps = 5/374 (1%)
Query: 35 ALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94
A+ F +V+ +E EK EWGFKALKQ +K+ + + ++M++ YR++LTYIKSAVT+NYSE
Sbjct: 47 AIKSFEKVLELEGEKGEWGFKALKQMIKITFGQNRLEKMLEYYRQLLTYIKSAVTKNYSE 106
Query: 95 KCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGR 154
K IN I+D++S S+ LL+ FY+TTL AL++AKNERLWFKTN KL K++FD+ E+ +
Sbjct: 107 KSINAILDYIS--TSRQMDLLQHFYETTLDALKDAKNERLWFKTNTKLGKLFFDLHEFTK 164
Query: 155 MSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQ---KALAI 211
+ KI+K+L SC+ E G +DQ+KG+QLLE+YA+EIQMYTE KNNK LK +Y+ +A+
Sbjct: 165 LEKIVKQLKVSCKNEQGEEDQRKGTQLLEIYALEIQMYTEQKNNKALKWVYELATQAIHT 224
Query: 212 KSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLAN 271
KSAIPHP I+G IRECGGKMH+ + ++ DA TDFFEAFKNYDE+G+ RR CLKYLVLAN
Sbjct: 225 KSAIPHPLILGTIRECGGKMHLRDGRFLDAHTDFFEAFKNYDESGSPRRTTCLKYLVLAN 284
Query: 272 MLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIR 331
ML++S++NPFD QEAKP+KN+PEI+AMT ++ AYQ N+I FE+I+ +++ +IM DPFIR
Sbjct: 285 MLIKSDINPFDSQEAKPFKNEPEIVAMTQMVQAYQDNDIQAFEQIMAAHQDSIMADPFIR 344
Query: 332 NYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391
+ E+L+ N+RTQVLL+LI+PYT +RI ++S++L V +K+V LLV ILD+ ++ I++
Sbjct: 345 EHTEELMNNIRTQVLLRLIRPYTNVRISYLSQKLKVSQKEVIHLLVDAILDDGLEAKINE 404
Query: 392 VNRLLERGDRSKGM 405
+ ++E K M
Sbjct: 405 ESGMIEMPKNKKKM 418
>sp|Q7SI58|CSN2_NEUCR COP9 signalosome complex subunit 2 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-2 PE=1 SV=1
Length = 490
Score = 417 bits (1071), Expect = e-115, Method: Compositional matrix adjust.
Identities = 189/370 (51%), Positives = 272/370 (73%), Gaps = 3/370 (0%)
Query: 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT 89
+DPE AL F + +E EK +WGFKALKQ +KL ++L +Y+E + Y E+LTY+KSAVT
Sbjct: 44 SDPEEALQEFLSIPPLEQEKGDWGFKALKQAIKLEFKLKRYQEATEHYEELLTYVKSAVT 103
Query: 90 RNYSEKCINNIMDFVSGS--ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWF 147
RNYSEK I+N+++++ + + +FY TL+ + NERLW KTN+KL ++
Sbjct: 104 RNYSEKSIDNMLNYIEKGYDDPKAVQCIEKFYSLTLQCFQSTNNERLWLKTNIKLARLLL 163
Query: 148 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 207
D +Y +++ L+ELH +C++ DGTDD KG+ LE+YA+EIQMY+ET+NN +LK LYQK
Sbjct: 164 DRKDYHAVARKLRELHNACRKSDGTDDPSKGTYSLEIYALEIQMYSETRNNNQLKVLYQK 223
Query: 208 ALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYL 267
AL ++SA+PHP+I G+IRECGGKMHM+E W +A +DFFEAF+NYDEAG+ RRIQ LKYL
Sbjct: 224 ALKVRSAVPHPKIQGVIRECGGKMHMSEENWKEAQSDFFEAFRNYDEAGDLRRIQVLKYL 283
Query: 268 VLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDD 327
+L MLM+S++NPFD QE KPY+NDP I AMT L+ AYQR++I +E +L+ N ++ D
Sbjct: 284 LLTTMLMKSDINPFDSQEMKPYRNDPRIFAMTELVDAYQRDDIYRYEDVLQKN-TDLLAD 342
Query: 328 PFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387
PFI I+++ +N+RT+ ++KLI PYTR+RI ++++ L + E +V +L LI+D R+ G
Sbjct: 343 PFIAENIDEVTRNMRTKGVVKLIAPYTRMRISWLAERLRITEPEVMDILSFLIVDGRVKG 402
Query: 388 HIDQVNRLLE 397
ID+ +LE
Sbjct: 403 RIDEHKGVLE 412
>sp|Q9HFR0|CSN2_SCHPO COP9 signalosome complex subunit 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn2 PE=1 SV=1
Length = 437
Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust.
Identities = 180/380 (47%), Positives = 265/380 (69%), Gaps = 5/380 (1%)
Query: 20 CSILEKGLVETDPEGALAGFAEVVA-MEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYR 78
C K L E +PE AL F +V E E+ EW FKALKQ K+ ++L KY +M+ +Y+
Sbjct: 34 CYYNSKSLKEENPESALTSFYSIVEKCEGEQNEWAFKALKQITKINFQLKKYDDMLQSYQ 93
Query: 79 EMLTYIK-SAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFK 137
+L Y ++T+NYSEK I NI+++ S+ +N L +FY T KAL+ NERL K
Sbjct: 94 RLLGYTNWLSITKNYSEKSIYNIVEY--ASSCENTEFLEKFYDVTTKALQNLNNERLMLK 151
Query: 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT-DDQKKGSQLLEVYAIEIQMYTETK 196
+ + + Y + +L+++H+ E+ + DQ +G+ LLE+Y++EIQMY++ +
Sbjct: 152 VLMHVARFLLTQKNYHKFKYLLRQMHELLSDENNSVADQNRGTHLLELYSLEIQMYSDIE 211
Query: 197 NNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256
+NK+LK+LYQ +L +K+AIPHPRIMGIIRECGGKMHM E QW++A T+FFE+FK+YDEAG
Sbjct: 212 DNKRLKELYQSSLRVKTAIPHPRIMGIIRECGGKMHMQENQWSEAQTNFFESFKSYDEAG 271
Query: 257 NQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKI 316
+ RI+ LKYLVLANML ESE+NPFD E +PYK++P I+AMT L+ AYQ +I E+I
Sbjct: 272 SSDRIRVLKYLVLANMLSESEINPFDSPETQPYKDNPHIIAMTKLVEAYQIRDITAVERI 331
Query: 317 LKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLL 376
L++ + I+DD FIR Y++ +L ++R+QVL++L+KPYT +++ ++K+L V +EQ L
Sbjct: 332 LQTYQHDILDDDFIRQYVDKILYSIRSQVLIELVKPYTSVKLSLLAKKLGVSISIIEQAL 391
Query: 377 VSLILDNRIDGHIDQVNRLL 396
V LI+D R++G ID VN +
Sbjct: 392 VGLIIDERVNGKIDMVNEVF 411
>sp|Q54UB5|PSD11_DICDI 26S proteasome non-ATPase regulatory subunit 11 OS=Dictyostelium
discoideum GN=psmD11 PE=2 SV=1
Length = 413
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/365 (22%), Positives = 176/365 (48%), Gaps = 12/365 (3%)
Query: 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR 90
D A+ + +++ ++ + +A+ + KL+ ++GK ++ R + + +++
Sbjct: 15 DSNKAIQDYNKILTIQESPDDIKEEAILRLAKLFVKIGKGDQLPTLLRSVRPFF-DKISK 73
Query: 91 NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMG 150
++K + N +D S + N + L EF + ++ ++ L + KL + F+
Sbjct: 74 PKTDKIVRNFIDIFS-TVPDNLTTLIEFVKENIQWCKDTNRIYLRQRLETKLFTLMFEAK 132
Query: 151 EYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210
+Y L L +R D L+E+ +E ++ KN K + A
Sbjct: 133 DYANALSGLTTLLTEIKRLDD------KPLLVEIQLVESRIQHALKNIPKARAALTSART 186
Query: 211 IKSAI-PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVL 269
+ I P++ I G +H E+ + A + FFE+++ YD + ++ LKY++L
Sbjct: 187 NANTIYCPPKLQAEIDMQSGILHSEEKDYKTAFSYFFESYETYDSLEDPFAMKALKYMLL 246
Query: 270 ANMLME--SEVNPF-DGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMD 326
++ +V+ +G+ Y N+ I A+T + ++ + + F+++ K + D
Sbjct: 247 CKIMTNQTDDVHALVNGKIGLKYHNNRSIEAITQISKSHAKRSLHMFQEVTKEFSDQLSD 306
Query: 327 DPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386
DP I +++ +L N+ Q L ++I+P++R+ I I+K +++P VE+ L +ILD + +
Sbjct: 307 DPIIHSHLTELYSNLLEQNLCRIIEPFSRVEISHIAKLIDLPVDVVERKLSLMILDKKYN 366
Query: 387 GHIDQ 391
G +DQ
Sbjct: 367 GILDQ 371
>sp|Q7KLV9|PSD11_DROME 26S proteasome non-ATPase regulatory subunit 11 OS=Drosophila
melanogaster GN=Rpn6 PE=1 SV=1
Length = 422
Score = 102 bits (253), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 173/346 (50%), Gaps = 30/346 (8%)
Query: 59 QTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD-FVSGSASQNFSLLRE 117
Q +LY + GK KE+ D + ++ S++++ + K + +++D F+ A +
Sbjct: 52 QQGELYKQEGKAKELADLIKVTRPFL-SSISKAKAAKLVRSLVDMFLDMDAGTGIEV--- 107
Query: 118 FYQTTLKALEEAKNE-RLWFKTNL--KLCKIWFDMGEYGRM----SKILKELHKSCQRED 170
Q +E AK E R + + +L +L ++FD Y +++L+EL K
Sbjct: 108 --QLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKK------ 159
Query: 171 GTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI-PHPRIMGIIRECGG 229
DD+ + L+EV +E + Y N K + A +AI P++ G + G
Sbjct: 160 -LDDK---NLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSG 215
Query: 230 KMHMA-ERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLM--ESEVNPF-DGQE 285
+H A ER + A + F+EAF+ +D + + + LKY++L +++ +VN G+
Sbjct: 216 ILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKL 275
Query: 286 AKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQV 345
A Y +I AM ++ A + + +F+ LK +K + +D ++ ++ L + Q
Sbjct: 276 AITYSG-RDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQN 334
Query: 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391
L ++I+PY+R+++ +++ + +P VE+ L +ILD + G +DQ
Sbjct: 335 LCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQ 380
>sp|F1LMZ8|PSD11_RAT 26S proteasome non-ATPase regulatory subunit 11 OS=Rattus
norvegicus GN=Psmd11 PE=2 SV=2
Length = 422
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/407 (24%), Positives = 190/407 (46%), Gaps = 41/407 (10%)
Query: 25 KGLVETDPEGALAGFAEVVAME-PEKAEWGFKALKQTV----KLYYRLGKYKEMMDAYRE 79
+ L+ TD E ++ +V + E E + +Q++ L + G+ E+ +
Sbjct: 13 QSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKY 72
Query: 80 MLTYIKSAVTRNYSEKCINNIMDF---VSGSASQNFSLLREFYQTTLKALEEAKNERLWF 136
+ ++ S +++ + + + +++D + + Q L L+ +E AK+E+ F
Sbjct: 73 VRPFLNS-ISKAKAARLVRSLLDLFLDMEAATGQEVEL-------CLECIEWAKSEKRTF 124
Query: 137 ---KTNLKLCKIWFDMGEYGRM----SKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189
+L ++FD Y S++L+EL K DD+ + L+EV +E
Sbjct: 125 LRQALEARLVSLYFDTKRYQEALHLGSQLLRELKK-------MDDK---ALLVEVQLLES 174
Query: 190 QMYTETKNNKKLKQLYQKALAIKSAI--PHPRIMGIIRECGGKMHMAE-RQWADAATDFF 246
+ Y N K + A +AI P P++ + G +H AE + W A + F+
Sbjct: 175 KTYHALSNLPKARAALTSARTTANAIYCP-PKLQATLDMQSGIIHAAEEKDWKTAYSYFY 233
Query: 247 EAFKNYDEAGNQRRIQCLKYLVLANMLMES--EVNPF-DGQEAKPYKNDPEILAMTNLIA 303
EAF+ YD + + I LKY++L +++ + +V G+ A Y + A+ +
Sbjct: 234 EAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGR-QTEALKCVAQ 292
Query: 304 AYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISK 363
A + + +FEK L R + DDP I ++ L N+ Q L+++I+P++R++I IS
Sbjct: 293 ASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISS 352
Query: 364 ELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTA 410
+ + + DVE+ L +ILD + G +DQ +L D K Y A
Sbjct: 353 LIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEA 399
>sp|O00231|PSD11_HUMAN 26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens
GN=PSMD11 PE=1 SV=3
Length = 422
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/407 (24%), Positives = 190/407 (46%), Gaps = 41/407 (10%)
Query: 25 KGLVETDPEGALAGFAEVVAME-PEKAEWGFKALKQTV----KLYYRLGKYKEMMDAYRE 79
+ L+ TD E ++ +V + E E + +Q++ L + G+ E+ +
Sbjct: 13 QSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKY 72
Query: 80 MLTYIKSAVTRNYSEKCINNIMDF---VSGSASQNFSLLREFYQTTLKALEEAKNERLWF 136
+ ++ S +++ + + + +++D + + Q L L+ +E AK+E+ F
Sbjct: 73 VRPFLNS-ISKAKAARLVRSLLDLFLDMEAATGQEVEL-------CLECIEWAKSEKRTF 124
Query: 137 ---KTNLKLCKIWFDMGEYGRM----SKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189
+L ++FD Y S++L+EL K DD+ + L+EV +E
Sbjct: 125 LRQALEARLVSLYFDTKRYQEALHLGSQLLRELKK-------MDDK---ALLVEVQLLES 174
Query: 190 QMYTETKNNKKLKQLYQKALAIKSAI--PHPRIMGIIRECGGKMHMAE-RQWADAATDFF 246
+ Y N K + A +AI P P++ + G +H AE + W A + F+
Sbjct: 175 KTYHALSNLPKARAALTSARTTANAIYCP-PKLQATLDMQSGIIHAAEEKDWKTAYSYFY 233
Query: 247 EAFKNYDEAGNQRRIQCLKYLVLANMLMES--EVNPF-DGQEAKPYKNDPEILAMTNLIA 303
EAF+ YD + + I LKY++L +++ + +V G+ A Y + A+ +
Sbjct: 234 EAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGR-QTEALKCVAQ 292
Query: 304 AYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISK 363
A + + +FEK L R + DDP I ++ L N+ Q L+++I+P++R++I IS
Sbjct: 293 ASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISS 352
Query: 364 ELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTA 410
+ + + DVE+ L +ILD + G +DQ +L D K Y A
Sbjct: 353 LIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEA 399
>sp|Q2KI42|PSD11_BOVIN 26S proteasome non-ATPase regulatory subunit 11 OS=Bos taurus
GN=PSMD11 PE=2 SV=3
Length = 422
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/407 (24%), Positives = 190/407 (46%), Gaps = 41/407 (10%)
Query: 25 KGLVETDPEGALAGFAEVVAME-PEKAEWGFKALKQTV----KLYYRLGKYKEMMDAYRE 79
+ L+ TD E ++ +V + E E + +Q++ L + G+ E+ +
Sbjct: 13 QSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKY 72
Query: 80 MLTYIKSAVTRNYSEKCINNIMDF---VSGSASQNFSLLREFYQTTLKALEEAKNERLWF 136
+ ++ S +++ + + + +++D + + Q L L+ +E AK+E+ F
Sbjct: 73 VRPFLNS-ISKAKAARLVRSLLDLFLDMEAATGQEVEL-------CLECIEWAKSEKRTF 124
Query: 137 ---KTNLKLCKIWFDMGEYGRM----SKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189
+L ++FD Y S++L+EL K DD+ + L+EV +E
Sbjct: 125 LRQALEARLVSLYFDTKRYQEALHLGSQLLRELKK-------MDDK---ALLVEVQLLES 174
Query: 190 QMYTETKNNKKLKQLYQKALAIKSAI--PHPRIMGIIRECGGKMHMAE-RQWADAATDFF 246
+ Y N K + A +AI P P++ + G +H AE + W A + F+
Sbjct: 175 KTYHALSNLPKARAALTSARTTANAIYCP-PKLQATLDMQSGIIHAAEEKDWKTAYSYFY 233
Query: 247 EAFKNYDEAGNQRRIQCLKYLVLANMLMES--EVNPF-DGQEAKPYKNDPEILAMTNLIA 303
EAF+ YD + + I LKY++L +++ + +V G+ A Y + A+ +
Sbjct: 234 EAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGR-QTEALKCVAQ 292
Query: 304 AYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISK 363
A + + +FEK L R + DDP I ++ L N+ Q L+++I+P++R++I IS
Sbjct: 293 ASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISS 352
Query: 364 ELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTA 410
+ + + DVE+ L +ILD + G +DQ +L D K Y A
Sbjct: 353 LIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEA 399
>sp|Q8BG32|PSD11_MOUSE 26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus
GN=Psmd11 PE=1 SV=3
Length = 422
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/407 (24%), Positives = 190/407 (46%), Gaps = 41/407 (10%)
Query: 25 KGLVETDPEGALAGFAEVVAME-PEKAEWGFKALKQTV----KLYYRLGKYKEMMDAYRE 79
+ L+ TD E ++ +V + E E + +Q++ L + G+ E+ +
Sbjct: 13 QSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKY 72
Query: 80 MLTYIKSAVTRNYSEKCINNIMDF---VSGSASQNFSLLREFYQTTLKALEEAKNERLWF 136
+ ++ S +++ + + + +++D + + Q L L+ +E AK+E+ F
Sbjct: 73 VRPFLNS-ISKAKAARLVRSLLDLFLDMEAATGQEVEL-------CLECIEWAKSEKRTF 124
Query: 137 ---KTNLKLCKIWFDMGEYGRM----SKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189
+L ++FD Y S++L+EL K DD+ + L+EV +E
Sbjct: 125 LRQALEARLVSLYFDTKRYQEALHLGSQLLRELKK-------MDDK---ALLVEVQLLES 174
Query: 190 QMYTETKNNKKLKQLYQKALAIKSAI--PHPRIMGIIRECGGKMHMAE-RQWADAATDFF 246
+ Y N K + A +AI P P++ + G +H AE + W A + F+
Sbjct: 175 KTYHALSNLPKARAALTSARTTANAIYCP-PKLQATLDMQSGIIHAAEEKDWKTAYSYFY 233
Query: 247 EAFKNYDEAGNQRRIQCLKYLVLANMLMES--EVNPF-DGQEAKPYKNDPEILAMTNLIA 303
EAF+ YD + + I LKY++L +++ + +V G+ A Y + A+ +
Sbjct: 234 EAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGR-QTEALKCVAQ 292
Query: 304 AYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISK 363
A + + +FEK L R + DDP I ++ L N+ Q L+++I+P++R++I IS
Sbjct: 293 ASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISS 352
Query: 364 ELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTA 410
+ + + DVE+ L +ILD + G +DQ +L D K Y A
Sbjct: 353 LIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEA 399
>sp|F6P3G4|PS11A_DANRE 26S proteasome non-ATPase regulatory subunit 11A OS=Danio rerio
GN=psmd11a PE=2 SV=1
Length = 421
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 169/347 (48%), Gaps = 32/347 (9%)
Query: 80 MLTYIK---SAVTRNYSEKCINNIMD-FVSGSASQNFSLLREFYQTTLKALEEAKNERLW 135
+L Y++ +++++ + + + +++D F+ A+ + + L+ +E AK+E+
Sbjct: 68 LLKYVRPFLNSISKAKAARLVRSLLDMFLDMEAATG-----QEVELCLECIEWAKSEKRT 122
Query: 136 F---KTNLKLCKIWFDMGEYGRM----SKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188
F +L ++FD Y S++L+EL K DD+ + L+E+ +E
Sbjct: 123 FLRQALEARLVSLYFDTKRYQEALQLGSQLLQELKK-------MDDK---ALLVELQLLE 172
Query: 189 IQMYTETKNNKKLKQLYQKALAIKSAI-PHPRIMGIIRECGGKMHMAE-RQWADAATDFF 246
+ Y N K + A +AI P++ + G +H AE + W A + F+
Sbjct: 173 SKTYHALSNLPKARAALTSARTTANAIYCPPKLQAALDMQSGIIHAAEEKDWKTAYSYFY 232
Query: 247 EAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNP---FDGQEAKPYKNDPEILAMTNLIA 303
EAF+ YD + R I LKY++L +++ S + G+ A Y + A+ +
Sbjct: 233 EAFEGYDSIDSPRAITALKYMLLCKIMLNSPEDVQSLISGKLALRYAGR-QTEALKCVAQ 291
Query: 304 AYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISK 363
A + + +FEK L + + DDP I ++ L N+ Q L+++I+P++R++I IS+
Sbjct: 292 ASKNRSLADFEKALTEYKAELRDDPIISTHLTKLYDNLLEQNLIRVIEPFSRVQIEHISE 351
Query: 364 ELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTA 410
+ + + DVE+ L +ILD + G +DQ +L D K Y A
Sbjct: 352 LIKLSKGDVERKLSQMILDQKFHGILDQGEGVLIVFDEPPVDKTYEA 398
>sp|F1QGH9|PS11B_DANRE 26S proteasome non-ATPase regulatory subunit 11B OS=Danio rerio
GN=psmd11b PE=2 SV=1
Length = 422
Score = 98.6 bits (244), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 93/386 (24%), Positives = 178/386 (46%), Gaps = 37/386 (9%)
Query: 25 KGLVETDPEGALAGFAEVVAME-PEKAEWGFKALKQTV----KLYYRLGKYKEMMDAYRE 79
+ L+ TD ++ F +V + E E + +Q++ L + G+ E+ +
Sbjct: 13 QSLISTDRNASIDIFHSIVRRDVQEDDEEAVRVKEQSILELGSLLAKTGQAAELGGLLKF 72
Query: 80 MLTYIKSAVTRNYSEKCINNIMDF---VSGSASQNFSLLREFYQTTLKALEEAKNERLWF 136
+ ++ S +++ + + + +++D + + Q L L+ +E AK E+ F
Sbjct: 73 VRPFLIS-ISKAKAARLVRSLLDLFLDMEAATGQEVEL-------CLECIEWAKAEKRTF 124
Query: 137 ---KTNLKLCKIWFDMGEYGRM----SKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189
+L ++FD Y S++L+EL K DD+ + L+EV +E
Sbjct: 125 LRQALEARLISLYFDTKRYQEALQLESQLLQELKK-------MDDK---ALLVEVQLLES 174
Query: 190 QMYTETKNNKKLKQLYQKALAIKSAI-PHPRIMGIIRECGGKMHMAE-RQWADAATDFFE 247
+ Y N K + A +AI P++ + G +H AE + W A + FFE
Sbjct: 175 KTYHALSNLPKARAALTSARTTANAIYCPPKLQAALDMQSGIIHAAEEKDWKTAYSYFFE 234
Query: 248 AFKNYDEAGNQRRIQCLKYLVLANMLME--SEVNPFDGQEAKPYKNDPEILAMTNLIAAY 305
AF+ YD + R + LKY++L +++ EV + + A+ + A
Sbjct: 235 AFEGYDSIDSPRAVTALKYMLLCKIMLSLPEEVQALISGKLGLRYAGRQTDALKCIAQAS 294
Query: 306 QRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKEL 365
+ + +FEK L K + DDP I ++ L N+ Q L+++I+P++R++I I+ +
Sbjct: 295 KNRSLADFEKALTEYTKELRDDPIINTHLAKLYDNLLEQNLIRVIEPFSRVQITHIAGLI 354
Query: 366 NVPEKDVEQLLVSLILDNRIDGHIDQ 391
+ + DVE+ L +ILD + G +DQ
Sbjct: 355 KLSKNDVERKLSQMILDKKFHGILDQ 380
>sp|F6XBL2|PSD11_XENTR 26S proteasome non-ATPase regulatory subunit 11 OS=Xenopus
tropicalis GN=psmd11 PE=3 SV=2
Length = 422
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 165/349 (47%), Gaps = 36/349 (10%)
Query: 80 MLTYIK---SAVTRNYSEKCINNIMDF---VSGSASQNFSLLREFYQTTLKALEEAKNER 133
+L Y++ +++++ + + + +++D + + Q L L+ +E AK E+
Sbjct: 69 LLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVEL-------CLECIEWAKAEK 121
Query: 134 LWF---KTNLKLCKIWFDMGEYGRM----SKILKELHKSCQREDGTDDQKKGSQLLEVYA 186
F +L ++FD Y S++L+EL K DD+ + L+EV
Sbjct: 122 RTFLRQALEARLVSLYFDTKRYQEALQLGSQLLRELKK-------MDDK---ALLVEVQL 171
Query: 187 IEIQMYTETKNNKKLKQLYQKALAIKSAI-PHPRIMGIIRECGGKMHMAE-RQWADAATD 244
+E + Y N K + A +AI P++ + G +H AE + W A +
Sbjct: 172 LESKTYHALSNLPKARAALTSARTTANAIYCPPKLQAALDMQSGIIHAAEEKDWKTAYSY 231
Query: 245 FFEAFKNYDEAGNQRRIQCLKYLVLANMLMES--EVNPF-DGQEAKPYKNDPEILAMTNL 301
F+EAF+ D + + I LKY++L +++ + +V G+ A Y + A+ +
Sbjct: 232 FYEAFEGNDSIDSPKAITALKYMLLCKIMLNTPEDVQALVSGKLALRYAGR-QTEALKCV 290
Query: 302 IAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFI 361
A + + FEK L + + DDP I ++ L N+ Q L+++I+P++R++I I
Sbjct: 291 AQASKNRSLANFEKALTDYKAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIDHI 350
Query: 362 SKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTA 410
S + +P+ +VE+ L +ILD + G +DQ +L D K Y A
Sbjct: 351 SSLIKLPKPEVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEA 399
>sp|Q9LP45|PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 OS=Arabidopsis
thaliana GN=RPN6A PE=1 SV=1
Length = 419
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 152/323 (47%), Gaps = 19/323 (5%)
Query: 78 REMLTYIK---SAVTRNYSEKCINNIMDFVS---GSASQNFSLLREFYQTTLKALEEAKN 131
R++LT ++ S + + + K + I+D V+ G+ +L +E + T K
Sbjct: 64 RKLLTKLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTTDLQITLCKEMVEWT----RAEKR 119
Query: 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM 191
L + +L + + EY +L L K +R DD+ L+++ +E ++
Sbjct: 120 TFLRQRVEARLAALLMENKEYVEALALLSTLVKEVRR---LDDKL---LLVDIDLLESKL 173
Query: 192 YTETKNNKKLKQLYQKALAIKSAI-PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250
+ +N K K A +AI P G I G +H E+ + + FFEAF+
Sbjct: 174 HFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTGYSYFFEAFE 233
Query: 251 NYDEAGNQRRIQCLKYLVLANMLME--SEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRN 308
+++ G+ R + LKY++L +++ +V +A P++ AM + A+ +
Sbjct: 234 SFNALGDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPDLDAMKAVADAHSKR 293
Query: 309 EIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVP 368
+ FE L+ + + DDP + ++ L + Q L +LI+P++R+ I I++ + +P
Sbjct: 294 SLKLFENALRDYKAQLEDDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIGLP 353
Query: 369 EKDVEQLLVSLILDNRIDGHIDQ 391
VE+ L +ILD + G +DQ
Sbjct: 354 LDHVEKKLSQMILDKKFAGTLDQ 376
>sp|A8X379|PS11B_CAEBR Probable 26S proteasome regulatory subunit rpn-6.2
OS=Caenorhabditis briggsae GN=rpn-6.2 PE=3 SV=1
Length = 411
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 153/303 (50%), Gaps = 17/303 (5%)
Query: 131 NERLWFKTNL--KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188
N+R + + +L +L +++ D+ E+ K+ +EL K ++ + + L+EV E
Sbjct: 107 NKREFLRRSLQARLVRLYNDVREFTEGQKLGQELSKELKKLEDRE------LLIEVSIEE 160
Query: 189 IQMYTETKNNKKLKQ-LYQKALAIKSAIPHPRIMGIIRECGGKMHMAE-RQWADAATDFF 246
+ N K K L + SA P++ + G ++ AE R + + + F+
Sbjct: 161 SKCAFNLNNLSKAKTALLTAKTSSNSAFASPQLQAAVDMQSGVLYSAEERDYKTSFSYFY 220
Query: 247 EAFKNYDEAGNQ-RRIQCLKYLVLAN-MLMESEVNP--FDGQEAKPYKNDPEILAMTNLI 302
EAF+ Y G++ LKY++L ML E+E P +E PY P I+A+ +
Sbjct: 221 EAFEGYGSIGDKVNATGALKYMILCKIMLNETEQIPAMLSTKEVLPYNTSPRIVAIRAMA 280
Query: 303 AAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFIS 362
A+++ + +F K L+ ++K +++D + + ++L + + + + ++I+PY+ I + +I+
Sbjct: 281 DAFRKRSLKDFMKALEEHKKELVEDKVVAVHSQNLERTMLEKEISRVIEPYSEIELSYIA 340
Query: 363 KELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSLY 422
+ + + E+ + +ILD ++ G IDQ + ++ K++T + + +R L
Sbjct: 341 RVIGMTVPPTEKAIARMILDKKLMGSIDQHGDTVVIYPKAGATKQFT---RALTTIRELT 397
Query: 423 QTV 425
+TV
Sbjct: 398 KTV 400
>sp|Q9P7S2|RPN6_SCHPO Probable 26S proteasome regulatory subunit rpn6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpn6 PE=3 SV=1
Length = 421
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 93/393 (23%), Positives = 184/393 (46%), Gaps = 26/393 (6%)
Query: 31 DPEGALAGFAEV----VAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKS 86
D E A+ + EV V+ + + A +AL LY R ++ ++ ++ + +
Sbjct: 18 DIEKAIDLYKEVLNKGVSKDEKVANEQEQALTNLSDLYVRENRHNDLAQLVQQSRPLMAN 77
Query: 87 AVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLK-ALEEAKNERLWFKTNL--KLC 143
++ S K + ++D SG ++ L E +K A++E +R + + L KL
Sbjct: 78 -FSKAKSAKIVRTLIDKFSGE-KKSLPLQIEVANDCIKWAIKE---KRTFLRQALETKLI 132
Query: 144 KIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQ 203
+++D Y ++ L +R D L EV+ +E ++Y +N K +
Sbjct: 133 SLYYDNSSYTDAINLINTLLSELKRMDDK------MLLTEVHLLESKVYHAIRNIPKARA 186
Query: 204 LYQKALAIKSAI--PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRR- 260
A +A+ P P + G + G +H + + A + F+EA++ + + ++
Sbjct: 187 SLTAAKTSANAVYCP-PMLQGNLDLQSGILHADDMDFKTAYSYFYEAYEGFTSLDDDKKA 245
Query: 261 IQCLKYLVLANMLMES--EVNPF-DGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKIL 317
+ LKY++L+ +++ S EV G+ A Y +I AM + A++ + +FEK L
Sbjct: 246 LSSLKYMLLSQIMLNSVSEVKSLLTGKHAIRYAG-RDIEAMRAIAQAHENRSLADFEKAL 304
Query: 318 KSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLV 377
+ + + DP IR+++ L N+ Q LL++++P++R+ + I++ + + VE L
Sbjct: 305 QDYKPELASDPIIRSHLSSLYDNLLEQNLLRVVEPFSRVEVSHIAELIGLSTVQVEGKLS 364
Query: 378 SLILDNRIDGHIDQVNRLLERGDRSKGMKKYTA 410
+ILD G +DQ + L D + K Y A
Sbjct: 365 QMILDKIFYGILDQGSGCLIVYDEPQQDKTYEA 397
>sp|P34481|PS11B_CAEEL Probable 26S proteasome regulatory subunit rpn-6.2
OS=Caenorhabditis elegans GN=rpn-6.2 PE=3 SV=3
Length = 416
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 154/306 (50%), Gaps = 34/306 (11%)
Query: 131 NERLWFKTNL--KLCKIWFDMGEYGRMSKILKELHKSCQR-EDGTDDQKKGSQLLEVYAI 187
N+R + + +L +L +++ D+ ++ K+ ++L K ++ ED +LL ++
Sbjct: 112 NKREFLRRSLQARLIRLYNDIRDFTNAQKLAQDLSKELKKLED--------RELLIEVSV 163
Query: 188 EIQMYTETKNNKKLKQLYQKALAI-------KSAIPHPRIMGIIRECGGKMHMAE-RQWA 239
E E+K++ L L + A+ SA P++ + G ++ AE R +
Sbjct: 164 E-----ESKSSFNLNNLAKAKTALLTAKTNTNSAFASPQLQASVDMQSGVLYSAEERDYK 218
Query: 240 DAATDFFEAFKNYDEAGNQ-RRIQCLKYLVLAN-MLMESE--VNPFDGQEAKPYKNDPEI 295
+ + F+EAF+ + G++ LKY++L ML E+E +E Y+ P I
Sbjct: 219 TSFSYFYEAFEGFASIGDKINATSALKYMILCKIMLNETEQLAGLLAAKEIVAYQKSPRI 278
Query: 296 LAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTR 355
+A+ ++ A+++ + +F K L ++ +++D + + ++L +N+ + + ++I+PY+
Sbjct: 279 IAIRSMADAFRKRSLKDFVKALAEHKIELVEDKVVAVHSQNLERNMLEKEISRVIEPYSE 338
Query: 356 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWN 415
I + +I++ + + VE+ + +ILD ++ G IDQ GD K A +++
Sbjct: 339 IELSYIARVIGMTVPPVERAIARMILDKKLMGSIDQ------HGDTVVVYPKADAANQFT 392
Query: 416 SQLRSL 421
L+++
Sbjct: 393 RSLKTI 398
>sp|Q12377|RPN6_YEAST 26S proteasome regulatory subunit RPN6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN6 PE=1 SV=3
Length = 434
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 132/281 (46%), Gaps = 17/281 (6%)
Query: 124 KALEEAKNE-RLWFKTNL--KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQ 180
K++E AK E R++ K +L KL + + +Y ++ +L + ++ D
Sbjct: 120 KSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD------KPS 173
Query: 181 LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP-RIMGIIRECGGKMHMAERQWA 239
L++V+ +E ++Y + +N K K A ++I P + + + G +H ++ +
Sbjct: 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYK 233
Query: 240 DAATDFFEAFKNYDEAGN----QRRIQCLKYLVLANM---LMESEVNPFDGQEAKPYKND 292
A + FFE+F++Y ++ Q LKY++L+ + L++ N + + K
Sbjct: 234 TAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQS 293
Query: 293 PEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKP 352
I AM + AY +++F LK K +M D R++ L + L K+I+P
Sbjct: 294 RGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEP 353
Query: 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN 393
+ + I ISK + + + VE L +ILD G +DQ N
Sbjct: 354 FECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGN 394
>sp|Q20938|PS11A_CAEEL Probable 26S proteasome regulatory subunit rpn-6.1
OS=Caenorhabditis elegans GN=rpn-6.1 PE=2 SV=2
Length = 438
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 132/271 (48%), Gaps = 13/271 (4%)
Query: 133 RLWFKTNL--KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ 190
R + + L +L +++ D+ Y + + +L + ++ D D L+EV E +
Sbjct: 137 RTFLRQTLTARLVRLYNDLQRYTQALPLAADLIRELKKVDDKD------VLVEVELEESK 190
Query: 191 MYTETKNNKKLKQLYQKALAIKSAI-PHPRIMGIIRECGGKMHMA-ERQWADAATDFFEA 248
Y N + + A +AI +PR+ + G +H A E+ + A + F+EA
Sbjct: 191 AYYNLSNIGRARASLTGARTTANAIYVNPRMQAALDLQSGILHAADEKDFKTAFSYFYEA 250
Query: 249 FKNYDEAGNQ-RRIQCLKYLVLANMLME--SEVNPFDGQEAKPYKNDPEILAMTNLIAAY 305
F+ YD + + LKY++L ++++ EVN + N ++ AM + AA
Sbjct: 251 FEGYDSVDEKVSALTALKYMLLCKVMLDLPDEVNSLLSAKLALKYNGSDLDAMKAIAAAA 310
Query: 306 QRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKEL 365
Q+ + +F+ S + + DP +R + L + + + L ++I+PY+ ++I +++++
Sbjct: 311 QKRSLKDFQVAFGSFPQELQMDPVVRKHFHSLSERMLEKDLCRIIEPYSFVQIEHVAQQI 370
Query: 366 NVPEKDVEQLLVSLILDNRIDGHIDQVNRLL 396
+ VE+ L +ILD ++ G +DQ +L
Sbjct: 371 GIDRSKVEKKLSQMILDQKLSGSLDQGEGML 401
>sp|Q7RXQ1|CSN1_NEUCR COP9 signalosome complex subunit 1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-1 PE=1 SV=1
Length = 425
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 49/80 (61%)
Query: 315 KILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQ 374
+IL+S R + D +++ ++ L ++RT+ +++ +KP++ +R+ + K N P +E
Sbjct: 291 EILESYRPDYLLDIYLQKHVPKLYADIRTKSIVQYLKPFSCVRLDTMQKAFNGPGPSIED 350
Query: 375 LLVSLILDNRIDGHIDQVNR 394
L ++I D +++ ID +N+
Sbjct: 351 ELFTMIKDGKLNARIDAINK 370
>sp|Q9GS00|CSN1_CAEEL COP9 signalosome complex subunit 1 OS=Caenorhabditis elegans
GN=csn-1 PE=1 SV=1
Length = 601
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 78/144 (54%), Gaps = 7/144 (4%)
Query: 282 DGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNV 341
+G K +++P+++ L+ +Y + +I++S + ++ DPFI +++L + +
Sbjct: 382 NGTFRKLLESEPQLI---ELLGSYTSSRFGRCFEIMRSVKPRLLLDPFISRNVDELFEKI 438
Query: 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ---VNRLLER 398
R + +L+ ++PY+ I++ +++ + + +++ L+ LI + IDQ + R+L+
Sbjct: 439 RQKCVLQYLQPYSTIKMATMAEAVGMSSAELQLSLLELIEQKHVSLKIDQNEGIVRILDE 498
Query: 399 GDRSKGMKKY-TAIDKWNSQLRSL 421
D + +K+ D+ + +SL
Sbjct: 499 RDENAILKRVNVTCDRATQKAKSL 522
>sp|Q9V345|CSN4_DROME COP9 signalosome complex subunit 4 OS=Drosophila melanogaster
GN=CSN4 PE=1 SV=1
Length = 407
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 13/122 (10%)
Query: 306 QRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKEL 365
+R+E+ EFE +L+ ++K D + I D + V LL K Y I + L
Sbjct: 281 RRSELQEFEALLQDHQKAATSDG---SSILD--RAVFEHNLLSASKLYNNITFEELGALL 335
Query: 366 NVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSL-YQT 424
++P E++ +I + R++GHIDQ++ ++ +R + +W+ Q++SL YQ
Sbjct: 336 DIPAVKAEKIASQMITEGRMNGHIDQISAIVHFENRE-------LLPQWDRQIQSLCYQV 388
Query: 425 VS 426
S
Sbjct: 389 NS 390
>sp|Q9LNU4|PSD31_ARATH Probable 26S proteasome non-ATPase regulatory subunit 3a
OS=Arabidopsis thaliana GN=EMB2719 PE=1 SV=3
Length = 488
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 31/189 (16%)
Query: 229 GKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLM----ESEVNPFDGQ 284
GK+ + ++ DA +A + A RIQC K+ +L +L+ E + G
Sbjct: 247 GKIRTIQLEYTDAKESLLQAARKAPIAALGFRIQCNKWAILVRLLLGEIPERSIFTQKGM 306
Query: 285 EA--KPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVR 342
E +PY +TN + I + E K + D F ++ +L+ +R
Sbjct: 307 EKALRPY------FELTNAV------RIGDLELFRTVQEKFL--DTFAQDRTHNLIVRLR 352
Query: 343 TQVLLKLIK----PYTRIRIPFISKELNV----PEKDVEQLLVSLILDNRIDGHIDQVNR 394
V+ ++ Y+RI +P ++K+L + P D E ++ I D ID ID N
Sbjct: 353 HNVIRTGLRNISISYSRISLPDVAKKLRLNSENPVADAESIVAKAIRDGAIDATIDHKNG 412
Query: 395 LL---ERGD 400
+ E GD
Sbjct: 413 CMVSKETGD 421
>sp|Q9LQR8|PSD32_ARATH Probable 26S proteasome non-ATPase regulatory subunit 3b
OS=Arabidopsis thaliana GN=At1g75990 PE=2 SV=2
Length = 487
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 23/185 (12%)
Query: 229 GKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLM----ESEVNPFDGQ 284
GK+ + ++ DA +A + A RIQC K+ ++ +L+ E + G
Sbjct: 246 GKIRTIQLEYTDAKESLLQAARKAPVASLGFRIQCNKWAIIVRLLLGEIPERSIFTQKGM 305
Query: 285 EA--KPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVR 342
E +PY +TN A + ++ F KI + KT +D N I L NV
Sbjct: 306 EKTLRPY------FELTN---AVRIGDLELFGKIQEKFAKTFAEDR-THNLIVRLRHNVI 355
Query: 343 TQVLLKLIKPYTRIRIPFISKELNV----PEKDVEQLLVSLILDNRIDGHIDQVNRLL-- 396
L + Y+RI + ++++L + P D E ++ I D ID ID N +
Sbjct: 356 RTGLRNISISYSRISLQDVAQKLRLNSANPVADAESIVAKAIRDGAIDATIDHKNGCMVS 415
Query: 397 -ERGD 400
E GD
Sbjct: 416 KETGD 420
>sp|P93768|PSMD3_TOBAC Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Nicotiana tabacum GN=21D7 PE=2 SV=1
Length = 488
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 20/175 (11%)
Query: 229 GKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLM----ESEVNPFDGQ 284
GK+ + ++ DA +A + +A R+QC K+ ++ +L+ E V G
Sbjct: 247 GKIRTIQLEYTDAKESLLQAARKAPQAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGM 306
Query: 285 EA--KPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVR 342
E +PY +TN A + ++ F K+ + T D N I L NV
Sbjct: 307 EKALRPY------FELTN---AVRIGDLELFRKVAEKFSSTFSSDG-TNNLIVRLRHNVI 356
Query: 343 TQVLLKLIKPYTRIRIPFISKELNV----PEKDVEQLLVSLILDNRIDGHIDQVN 393
L + Y+RI + ++K+L + P D E ++ I D ID +D N
Sbjct: 357 RTGLRNISISYSRISLVDVAKKLRLDSPNPVADAESIVSKAIRDGAIDATLDHAN 411
>sp|Q9VVU5|CSN1_DROME COP9 signalosome complex subunit 1b OS=Drosophila melanogaster
GN=CSN1b PE=2 SV=1
Length = 525
Score = 40.0 bits (92), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%)
Query: 316 ILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQL 375
+L R ++ D +I ++ L +R + L++ PY + ++ N D+E
Sbjct: 373 LLDEIRDNLLVDMYIAPHVTTLYTKIRNRALIQYFSPYMSADMHKMAMAFNSSVGDLENE 432
Query: 376 LVSLILDNRIDGHIDQVNRLL 396
++ LILD +I ID N++L
Sbjct: 433 VMQLILDGQIQARIDSHNKIL 453
>sp|B5DGH9|EIF3E_SALSA Eukaryotic translation initiation factor 3 subunit E OS=Salmo salar
GN=eif3e PE=2 SV=1
Length = 445
Score = 39.3 bits (90), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 314 EKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 373
+K L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E
Sbjct: 310 QKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISISMLADKLNMTPEEAE 369
Query: 374 QLLVSLILDNRIDGHID 390
+ +V+LI + R+D ID
Sbjct: 370 RWIVNLIRNARLDAKID 386
>sp|Q6P7L9|EIF3E_XENTR Eukaryotic translation initiation factor 3 subunit E OS=Xenopus
tropicalis GN=eif3e PE=2 SV=1
Length = 446
Score = 39.3 bits (90), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 314 EKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 373
+K L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E
Sbjct: 310 QKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISISMLADKLNMTPEEAE 369
Query: 374 QLLVSLILDNRIDGHID 390
+ +V+LI + R+D ID
Sbjct: 370 RWIVNLIRNARLDAKID 386
>sp|Q3B8M3|EI3EB_XENLA Eukaryotic translation initiation factor 3 subunit E-B OS=Xenopus
laevis GN=eif3e-b PE=2 SV=1
Length = 446
Score = 39.3 bits (90), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 314 EKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 373
+K L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E
Sbjct: 310 QKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISISMLADKLNMTPEEAE 369
Query: 374 QLLVSLILDNRIDGHID 390
+ +V+LI + R+D ID
Sbjct: 370 RWIVNLIRNARLDAKID 386
>sp|Q05AY2|EI3EA_XENLA Eukaryotic translation initiation factor 3 subunit E-A OS=Xenopus
laevis GN=eif3e-a PE=2 SV=1
Length = 446
Score = 39.3 bits (90), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 314 EKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 373
+K L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E
Sbjct: 310 QKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISISMLADKLNMTPEEAE 369
Query: 374 QLLVSLILDNRIDGHID 390
+ +V+LI + R+D ID
Sbjct: 370 RWIVNLIRNARLDAKID 386
>sp|Q3T102|EIF3E_BOVIN Eukaryotic translation initiation factor 3 subunit E OS=Bos taurus
GN=EIF3E PE=2 SV=1
Length = 445
Score = 38.5 bits (88), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 314 EKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 373
+K L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E
Sbjct: 309 QKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPEEAE 368
Query: 374 QLLVSLILDNRIDGHID 390
+ +V+LI + R+D ID
Sbjct: 369 RWIVNLIRNARLDAKID 385
>sp|Q641X8|EIF3E_RAT Eukaryotic translation initiation factor 3 subunit E OS=Rattus
norvegicus GN=Eif3e PE=2 SV=1
Length = 445
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 314 EKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 373
+K L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E
Sbjct: 309 QKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPEEAE 368
Query: 374 QLLVSLILDNRIDGHID 390
+ +V+LI + R+D ID
Sbjct: 369 RWIVNLIRNARLDAKID 385
>sp|Q5R8K9|EIF3E_PONAB Eukaryotic translation initiation factor 3 subunit E OS=Pongo
abelii GN=EIF3E PE=2 SV=2
Length = 445
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 314 EKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 373
+K L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E
Sbjct: 309 QKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPEEAE 368
Query: 374 QLLVSLILDNRIDGHID 390
+ +V+LI + R+D ID
Sbjct: 369 RWIVNLIRNARLDAKID 385
>sp|P60229|EIF3E_MOUSE Eukaryotic translation initiation factor 3 subunit E OS=Mus
musculus GN=Eif3e PE=1 SV=1
Length = 445
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 314 EKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 373
+K L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E
Sbjct: 309 QKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPEEAE 368
Query: 374 QLLVSLILDNRIDGHID 390
+ +V+LI + R+D ID
Sbjct: 369 RWIVNLIRNARLDAKID 385
>sp|Q4R6G8|EIF3E_MACFA Eukaryotic translation initiation factor 3 subunit E OS=Macaca
fascicularis GN=EIF3E PE=2 SV=1
Length = 445
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 314 EKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 373
+K L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E
Sbjct: 309 QKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPEEAE 368
Query: 374 QLLVSLILDNRIDGHID 390
+ +V+LI + R+D ID
Sbjct: 369 RWIVNLIRNARLDAKID 385
>sp|P60228|EIF3E_HUMAN Eukaryotic translation initiation factor 3 subunit E OS=Homo
sapiens GN=EIF3E PE=1 SV=1
Length = 445
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 314 EKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 373
+K L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E
Sbjct: 309 QKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPEEAE 368
Query: 374 QLLVSLILDNRIDGHID 390
+ +V+LI + R+D ID
Sbjct: 369 RWIVNLIRNARLDAKID 385
>sp|Q6DRI1|EI3EA_DANRE Eukaryotic translation initiation factor 3 subunit E-A OS=Danio
rerio GN=eif3ea PE=2 SV=2
Length = 446
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 314 EKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 373
+K L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E
Sbjct: 310 QKKLRECEAVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISIGMLADKLNMTPEEAE 369
Query: 374 QLLVSLILDNRIDGHID 390
+ +V+LI + R+D ID
Sbjct: 370 RWIVNLIRNARLDAKID 386
>sp|Q1LUA8|EI3EB_DANRE Eukaryotic translation initiation factor 3 subunit E-B OS=Danio
rerio GN=eif3eb PE=2 SV=2
Length = 446
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 43/77 (55%)
Query: 314 EKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 373
++ L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E
Sbjct: 310 QRKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISISMLADKLNMTPEEAE 369
Query: 374 QLLVSLILDNRIDGHID 390
+ +V+LI + R+D ID
Sbjct: 370 RWIVNLIRNARLDAKID 386
>sp|Q6C0Q2|EIF3E_YARLI Eukaryotic translation initiation factor 3 subunit E OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=INT6 PE=3 SV=1
Length = 421
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 12/113 (10%)
Query: 283 GQEAKPYKNDPEILAMTNLIAAYQ----RNEIIEFEKILKSNRKTIMDDPFIRNYIEDLL 338
GQE Y+ DP + +L Y +N++ + EK+LK D F+ + + L
Sbjct: 278 GQEEYEYQ-DPLTRFVKSLYIDYSFEDAQNQLADCEKVLKQ-------DFFLADSADAFL 329
Query: 339 KNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391
++ R + + + R+ I +S+ LN+ ++ E+ + +LI D+R+D ID+
Sbjct: 330 ESARKLMSQVYCRVHQRVDIAQLSQTLNLSQEQGEKWIANLIKDSRMDAKIDE 382
>sp|Q5ZLA5|EIF3E_CHICK Eukaryotic translation initiation factor 3 subunit E OS=Gallus
gallus GN=EIF3E PE=2 SV=1
Length = 445
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 43/77 (55%)
Query: 314 EKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 373
+K L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E
Sbjct: 309 QKKLRECETVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISIGMLADKLNMTPEEAE 368
Query: 374 QLLVSLILDNRIDGHID 390
+ +V+LI + R+D +D
Sbjct: 369 RWIVNLIRNARLDAKLD 385
>sp|Q7S519|EIF3E_NEUCR Eukaryotic translation initiation factor 3 subunit E OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=int-6 PE=3 SV=1
Length = 443
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 307 RNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELN 366
+ +++ E++L+S D F+ + +D + + R + K + RI + +S L
Sbjct: 328 QQQLVLAEEVLRS-------DFFLLAHADDFVDSARHLIFESYCKIHARISLKDLSARLG 380
Query: 367 VPEKDVEQLLVSLILDNRIDGHID 390
+ D E+ +V+LI D R+D ID
Sbjct: 381 LNNDDAEKWIVNLIRDTRLDAKID 404
>sp|Q54KZ8|EIF3M_DICDI Eukaryotic translation initiation factor 3 subunit M
OS=Dictyostelium discoideum GN=eif3m PE=1 SV=1
Length = 401
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 335 EDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394
+D L+ +R L L +++ ISK L + E +VE +++ + + +D +DQ+NR
Sbjct: 288 DDCLQKIRLLSLATLTSEQSKVPYSLISKMLQIDENEVEMWVINAMEGDLLDAKLDQLNR 347
Query: 395 LLERGDRSKGM---KKYTAIDK----WNSQLRSLYQTVSN 427
++ ++ + +++ + + W S +++L Q + N
Sbjct: 348 IVNVNSSTQRVFNKSQWSQLGQRFSVWKSSVKNLLQVIEN 387
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,517,297
Number of Sequences: 539616
Number of extensions: 6300765
Number of successful extensions: 18747
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 18628
Number of HSP's gapped (non-prelim): 128
length of query: 430
length of database: 191,569,459
effective HSP length: 120
effective length of query: 310
effective length of database: 126,815,539
effective search space: 39312817090
effective search space used: 39312817090
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)