Query 014143
Match_columns 430
No_of_seqs 216 out of 1092
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 02:15:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1464 COP9 signalosome, subu 100.0 1.4E-79 3E-84 552.5 35.6 416 12-429 23-439 (440)
2 KOG1463 26S proteasome regulat 100.0 2.4E-63 5.2E-68 458.6 31.5 388 21-420 8-410 (411)
3 COG5159 RPN6 26S proteasome re 100.0 7.7E-55 1.7E-59 394.2 31.4 396 21-428 7-416 (421)
4 KOG1498 26S proteasome regulat 100.0 7E-47 1.5E-51 355.8 28.7 388 19-428 15-423 (439)
5 COG5071 RPN5 26S proteasome re 100.0 9.8E-40 2.1E-44 297.4 27.0 389 20-427 16-422 (439)
6 KOG0687 26S proteasome regulat 100.0 6.8E-28 1.5E-32 222.6 27.9 278 137-425 105-391 (393)
7 KOG2908 26S proteasome regulat 100.0 1E-26 2.3E-31 216.1 31.7 322 55-428 37-374 (380)
8 KOG1497 COP9 signalosome, subu 100.0 1.4E-26 3.1E-31 213.1 28.1 356 54-427 22-389 (399)
9 COG5187 RPN7 26S proteasome re 99.9 2.8E-24 6E-29 195.9 30.9 341 54-413 42-389 (412)
10 KOG0686 COP9 signalosome, subu 99.9 2E-24 4.4E-29 205.1 17.6 268 137-417 151-427 (466)
11 PF01399 PCI: PCI domain; Int 99.8 5.2E-19 1.1E-23 144.0 12.1 105 296-400 1-105 (105)
12 KOG2758 Translation initiation 99.8 1.7E-17 3.7E-22 153.5 23.0 275 137-427 130-423 (432)
13 KOG2581 26S proteasome regulat 99.7 9.7E-16 2.1E-20 146.1 24.3 220 189-419 216-448 (493)
14 smart00088 PINT motif in prote 99.6 1.6E-14 3.5E-19 113.7 9.0 72 333-404 2-73 (88)
15 smart00753 PAM PCI/PINT associ 99.6 1.6E-14 3.5E-19 113.7 9.0 72 333-404 2-73 (88)
16 KOG2582 COP9 signalosome, subu 99.5 3.5E-12 7.6E-17 120.5 23.0 296 117-425 77-388 (422)
17 PF10602 RPN7: 26S proteasome 99.3 2.8E-10 6.1E-15 101.3 16.3 128 138-274 38-168 (177)
18 KOG2753 Uncharacterized conser 99.2 1.7E-08 3.7E-13 94.7 23.1 183 240-426 183-376 (378)
19 COG5600 Transcription-associat 99.0 2.2E-07 4.8E-12 88.9 22.1 243 150-403 144-406 (413)
20 KOG1076 Translation initiation 98.9 2.4E-06 5.1E-11 87.5 28.9 228 194-423 498-785 (843)
21 PF14938 SNAP: Soluble NSF att 98.8 1.5E-06 3.2E-11 83.6 23.4 237 51-330 32-270 (282)
22 KOG2688 Transcription-associat 98.8 5.4E-07 1.2E-11 88.1 17.6 239 152-403 132-387 (394)
23 PRK11788 tetratricopeptide rep 98.4 0.00039 8.5E-09 69.6 28.3 196 28-250 47-242 (389)
24 PF14938 SNAP: Soluble NSF att 98.4 8.9E-05 1.9E-09 71.3 22.3 174 30-211 49-225 (282)
25 PRK11788 tetratricopeptide rep 98.3 0.00032 7E-09 70.2 24.8 197 28-250 81-277 (389)
26 KOG1840 Kinesin light chain [C 98.3 8.9E-05 1.9E-09 76.1 19.9 213 29-249 254-477 (508)
27 COG2956 Predicted N-acetylgluc 98.2 0.00031 6.6E-09 66.7 21.0 201 21-249 39-241 (389)
28 TIGR02521 type_IV_pilW type IV 98.0 0.0016 3.5E-08 59.0 21.5 155 29-211 44-198 (234)
29 PRK10866 outer membrane biogen 98.0 0.00089 1.9E-08 62.8 19.1 179 16-205 31-235 (243)
30 KOG2072 Translation initiation 98.0 0.035 7.5E-07 58.7 35.4 219 181-399 231-492 (988)
31 TIGR00990 3a0801s09 mitochondr 98.0 0.0009 2E-08 71.6 21.2 189 30-251 308-496 (615)
32 TIGR00990 3a0801s09 mitochondr 98.0 0.0016 3.4E-08 69.7 22.7 191 29-250 344-536 (615)
33 PF13525 YfiO: Outer membrane 97.9 0.0019 4.2E-08 58.8 18.9 174 17-202 5-198 (203)
34 KOG2003 TPR repeat-containing 97.9 0.0018 3.8E-08 64.0 19.3 201 27-268 501-701 (840)
35 TIGR03302 OM_YfiO outer membra 97.9 0.0023 5E-08 59.3 19.5 171 19-208 35-229 (235)
36 KOG1840 Kinesin light chain [C 97.8 0.0094 2E-07 61.4 24.9 217 29-252 212-439 (508)
37 PF12569 NARP1: NMDA receptor- 97.8 0.033 7.2E-07 57.9 29.1 217 19-248 6-254 (517)
38 PRK10747 putative protoheme IX 97.8 0.0037 8.1E-08 63.1 21.1 189 28-251 165-357 (398)
39 PF09976 TPR_21: Tetratricopep 97.8 0.00097 2.1E-08 57.2 14.5 122 28-208 23-144 (145)
40 TIGR02917 PEP_TPR_lipo putativ 97.8 0.0031 6.8E-08 69.2 22.1 174 20-210 25-221 (899)
41 PF09976 TPR_21: Tetratricopep 97.7 0.0027 5.9E-08 54.4 15.9 94 139-248 51-144 (145)
42 KOG2003 TPR repeat-containing 97.6 0.0024 5.3E-08 63.0 16.0 208 28-251 249-519 (840)
43 KOG4626 O-linked N-acetylgluco 97.6 0.0082 1.8E-07 61.7 20.0 186 29-250 299-484 (966)
44 TIGR00540 hemY_coli hemY prote 97.6 0.0069 1.5E-07 61.4 19.9 191 29-247 166-360 (409)
45 TIGR02917 PEP_TPR_lipo putativ 97.6 0.0081 1.7E-07 66.0 21.7 94 139-250 570-663 (899)
46 COG2956 Predicted N-acetylgluc 97.6 0.0048 1E-07 58.8 16.6 69 132-211 210-278 (389)
47 PRK11447 cellulose synthase su 97.5 0.013 2.9E-07 67.3 22.2 198 29-252 474-701 (1157)
48 PF12569 NARP1: NMDA receptor- 97.5 0.034 7.5E-07 57.8 22.7 213 29-255 51-338 (517)
49 PF10075 PCI_Csn8: COP9 signal 97.5 0.00026 5.7E-09 60.8 6.1 84 292-379 38-121 (143)
50 TIGR02521 type_IV_pilW type IV 97.4 0.029 6.2E-07 50.6 19.6 172 50-251 27-198 (234)
51 PRK10049 pgaA outer membrane p 97.4 0.02 4.3E-07 63.0 21.4 197 29-253 250-458 (765)
52 KOG2002 TPR-containing nuclear 97.4 0.019 4.1E-07 61.9 20.1 200 32-252 146-372 (1018)
53 PF10255 Paf67: RNA polymerase 97.4 0.0041 9E-08 62.0 14.5 186 182-377 120-343 (404)
54 PRK11447 cellulose synthase su 97.4 0.013 2.8E-07 67.4 20.1 189 28-247 363-554 (1157)
55 COG4105 ComL DNA uptake lipopr 97.2 0.062 1.4E-06 50.0 18.5 179 14-204 31-226 (254)
56 PLN03081 pentatricopeptide (PP 97.1 0.2 4.4E-06 54.4 25.4 185 29-252 272-456 (697)
57 KOG1126 DNA-binding cell divis 97.1 0.041 9E-07 57.0 17.7 183 31-250 334-517 (638)
58 PRK15174 Vi polysaccharide exp 97.0 0.09 1.9E-06 56.7 21.4 52 28-83 88-139 (656)
59 PRK15174 Vi polysaccharide exp 97.0 0.16 3.4E-06 54.9 22.5 51 29-83 123-173 (656)
60 TIGR03302 OM_YfiO outer membra 97.0 0.2 4.3E-06 46.3 20.5 192 50-252 29-233 (235)
61 PF13525 YfiO: Outer membrane 97.0 0.17 3.7E-06 46.0 19.6 168 51-272 2-189 (203)
62 PLN03218 maturation of RBCL 1; 97.0 0.44 9.5E-06 54.1 26.3 194 29-248 485-710 (1060)
63 TIGR02795 tol_pal_ybgF tol-pal 96.9 0.025 5.5E-07 45.7 12.7 103 138-252 4-106 (119)
64 PRK12370 invasion protein regu 96.9 0.056 1.2E-06 57.1 17.7 150 30-248 318-467 (553)
65 KOG1585 Protein required for f 96.8 0.24 5.2E-06 45.7 18.7 170 32-210 47-218 (308)
66 PRK09782 bacteriophage N4 rece 96.8 0.17 3.7E-06 56.8 21.7 96 138-251 611-706 (987)
67 PF13429 TPR_15: Tetratricopep 96.7 0.045 9.8E-07 52.2 14.5 56 24-83 15-73 (280)
68 KOG3250 COP9 signalosome, subu 96.7 0.0044 9.5E-08 55.3 6.5 128 292-429 56-191 (258)
69 KOG4626 O-linked N-acetylgluco 96.7 0.049 1.1E-06 56.2 14.8 185 29-249 231-415 (966)
70 PRK02603 photosystem I assembl 96.7 0.062 1.3E-06 47.4 14.1 108 139-255 38-146 (172)
71 KOG1173 Anaphase-promoting com 96.6 0.16 3.6E-06 51.9 17.4 174 17-212 317-519 (611)
72 PF13429 TPR_15: Tetratricopep 96.5 0.056 1.2E-06 51.6 13.7 187 29-251 57-243 (280)
73 PF13424 TPR_12: Tetratricopep 96.5 0.013 2.9E-07 44.1 7.2 70 137-211 6-75 (78)
74 cd05804 StaR_like StaR_like; a 96.5 0.42 9.1E-06 47.0 19.7 194 30-249 20-213 (355)
75 PLN03218 maturation of RBCL 1; 96.4 0.55 1.2E-05 53.3 22.3 51 30-82 556-607 (1060)
76 cd00189 TPR Tetratricopeptide 96.4 0.062 1.3E-06 40.1 10.7 94 139-250 3-96 (100)
77 PRK10370 formate-dependent nit 96.4 0.12 2.7E-06 46.7 14.1 52 29-84 52-103 (198)
78 PF12895 Apc3: Anaphase-promot 96.3 0.027 5.7E-07 43.2 8.3 82 29-161 2-83 (84)
79 PRK10803 tol-pal system protei 96.3 0.047 1E-06 51.8 11.4 106 17-168 142-249 (263)
80 PRK09782 bacteriophage N4 rece 96.3 0.48 1E-05 53.4 20.7 191 28-248 521-737 (987)
81 PRK04841 transcriptional regul 96.3 1.1 2.5E-05 50.1 24.2 215 29-251 422-641 (903)
82 CHL00033 ycf3 photosystem I as 96.3 0.086 1.9E-06 46.2 12.3 108 138-254 37-145 (168)
83 PRK11189 lipoprotein NlpI; Pro 96.3 1.2 2.6E-05 43.0 22.2 122 31-166 41-162 (296)
84 PF03399 SAC3_GANP: SAC3/GANP/ 96.3 0.026 5.6E-07 51.3 9.1 105 257-367 95-204 (204)
85 PRK10370 formate-dependent nit 96.2 0.62 1.3E-05 42.2 17.9 114 140-273 77-193 (198)
86 COG3063 PilF Tfp pilus assembl 96.2 0.077 1.7E-06 48.5 11.5 114 137-272 36-150 (250)
87 PRK04841 transcriptional regul 96.2 1.3 2.8E-05 49.7 23.8 225 29-256 504-765 (903)
88 PF13424 TPR_12: Tetratricopep 96.1 0.057 1.2E-06 40.6 8.9 72 181-252 4-76 (78)
89 KOG1586 Protein required for f 96.1 1.1 2.5E-05 41.2 23.0 245 31-339 29-278 (288)
90 PRK10049 pgaA outer membrane p 96.1 0.28 6E-06 54.0 17.5 162 29-211 285-456 (765)
91 COG3071 HemY Uncharacterized e 96.0 1.1 2.3E-05 44.2 18.9 185 29-249 166-355 (400)
92 KOG2002 TPR-containing nuclear 96.0 1.1 2.3E-05 49.0 20.5 99 134-250 494-592 (1018)
93 PF13432 TPR_16: Tetratricopep 96.0 0.027 5.8E-07 40.8 6.3 52 29-84 10-61 (65)
94 KOG1130 Predicted G-alpha GTPa 96.0 0.18 3.8E-06 49.9 13.4 119 28-151 29-150 (639)
95 PF14559 TPR_19: Tetratricopep 96.0 0.014 3.1E-07 42.5 4.9 53 28-84 3-55 (68)
96 KOG2908 26S proteasome regulat 95.9 0.36 7.9E-06 46.5 15.1 88 147-240 86-175 (380)
97 PRK10866 outer membrane biogen 95.9 1.4 2.9E-05 41.4 19.0 166 52-271 30-222 (243)
98 PLN03081 pentatricopeptide (PP 95.9 0.27 5.8E-06 53.5 16.2 181 30-248 374-554 (697)
99 KOG3060 Uncharacterized conser 95.8 1.6 3.4E-05 40.7 21.4 194 25-251 21-220 (289)
100 PLN03077 Protein ECB2; Provisi 95.8 4.1 8.9E-05 45.5 27.2 109 140-275 528-637 (857)
101 PF04190 DUF410: Protein of un 95.8 1.7 3.8E-05 41.1 21.0 49 291-339 188-236 (260)
102 KOG1861 Leucine permease trans 95.8 0.062 1.4E-06 53.6 9.7 141 222-369 348-492 (540)
103 PF13432 TPR_16: Tetratricopep 95.8 0.071 1.5E-06 38.4 7.8 60 140-211 1-60 (65)
104 KOG1125 TPR repeat-containing 95.8 0.85 1.8E-05 47.0 17.8 96 136-250 430-526 (579)
105 KOG1155 Anaphase-promoting com 95.7 0.99 2.2E-05 45.4 17.7 195 19-250 337-535 (559)
106 PRK12370 invasion protein regu 95.7 0.65 1.4E-05 49.1 18.0 120 29-165 351-470 (553)
107 TIGR02552 LcrH_SycD type III s 95.7 0.41 8.8E-06 39.8 13.4 110 38-211 5-114 (135)
108 TIGR02552 LcrH_SycD type III s 95.7 0.19 4.1E-06 41.9 11.2 96 139-252 20-115 (135)
109 PRK11189 lipoprotein NlpI; Pro 95.6 0.43 9.2E-06 46.1 15.0 186 29-252 77-266 (296)
110 PRK14574 hmsH outer membrane p 95.6 2 4.3E-05 47.5 21.6 163 57-252 37-199 (822)
111 TIGR00540 hemY_coli hemY prote 95.6 0.52 1.1E-05 47.7 16.1 65 141-216 340-404 (409)
112 cd05804 StaR_like StaR_like; a 95.6 2.6 5.6E-05 41.3 21.7 217 29-265 127-351 (355)
113 KOG2076 RNA polymerase III tra 95.5 1.1 2.5E-05 48.3 18.4 46 28-77 151-196 (895)
114 KOG2300 Uncharacterized conser 95.5 1.6 3.5E-05 44.2 18.2 179 55-243 324-506 (629)
115 KOG1156 N-terminal acetyltrans 95.5 3 6.5E-05 43.7 20.5 123 138-272 373-535 (700)
116 TIGR02795 tol_pal_ybgF tol-pal 95.4 0.5 1.1E-05 37.9 12.5 103 55-211 3-105 (119)
117 PF09756 DDRGK: DDRGK domain; 95.3 0.029 6.3E-07 50.0 5.1 57 345-401 103-159 (188)
118 KOG1586 Protein required for f 95.3 2.3 5.1E-05 39.2 18.6 100 112-219 130-232 (288)
119 KOG2076 RNA polymerase III tra 95.2 3.4 7.4E-05 44.8 20.5 202 28-251 219-478 (895)
120 PRK15359 type III secretion sy 95.2 0.27 5.8E-06 42.1 10.5 92 141-250 29-120 (144)
121 PRK15363 pathogenicity island 95.1 0.89 1.9E-05 39.4 13.4 96 139-252 38-133 (157)
122 PF09012 FeoC: FeoC like trans 95.1 0.039 8.5E-07 40.8 4.5 49 345-393 4-52 (69)
123 PF13414 TPR_11: TPR repeat; P 95.1 0.19 4.2E-06 36.5 8.2 61 139-211 6-67 (69)
124 KOG1129 TPR repeat-containing 95.1 0.61 1.3E-05 44.9 13.2 164 57-253 226-389 (478)
125 PF13414 TPR_11: TPR repeat; P 95.0 0.058 1.3E-06 39.4 5.2 51 29-83 16-67 (69)
126 PF12895 Apc3: Anaphase-promot 95.0 0.27 5.9E-06 37.5 9.2 84 148-248 1-84 (84)
127 KOG1126 DNA-binding cell divis 95.0 0.23 5E-06 51.7 10.9 146 32-209 471-618 (638)
128 PF13512 TPR_18: Tetratricopep 94.9 0.13 2.9E-06 43.6 7.5 71 15-87 8-79 (142)
129 PRK10747 putative protoheme IX 94.8 3.3 7.2E-05 41.7 18.9 191 27-249 129-321 (398)
130 PLN03088 SGT1, suppressor of 94.7 0.37 8E-06 47.9 11.6 93 141-251 7-99 (356)
131 PRK14574 hmsH outer membrane p 94.6 9.4 0.0002 42.3 22.9 201 32-248 267-476 (822)
132 KOG3060 Uncharacterized conser 94.4 3.4 7.3E-05 38.6 15.9 157 29-213 65-222 (289)
133 PF10345 Cohesin_load: Cohesin 94.4 2.4 5.2E-05 45.4 17.7 141 112-259 30-176 (608)
134 CHL00033 ycf3 photosystem I as 94.4 1.2 2.7E-05 38.8 13.0 131 28-210 11-141 (168)
135 PLN03088 SGT1, suppressor of 94.3 0.33 7.1E-06 48.3 10.2 88 27-166 13-100 (356)
136 PRK15359 type III secretion sy 94.1 0.74 1.6E-05 39.3 10.8 29 139-167 95-123 (144)
137 PLN03077 Protein ECB2; Provisi 94.1 2.8 6.1E-05 46.8 18.2 180 29-247 537-716 (857)
138 KOG1941 Acetylcholine receptor 94.1 5.9 0.00013 38.9 17.5 225 30-257 20-281 (518)
139 COG4783 Putative Zn-dependent 94.1 2.1 4.6E-05 43.3 15.1 54 140-205 378-431 (484)
140 cd00189 TPR Tetratricopeptide 94.0 0.56 1.2E-05 34.7 9.0 85 29-165 13-97 (100)
141 PF13371 TPR_9: Tetratricopept 94.0 0.23 5E-06 36.5 6.5 53 28-84 7-59 (73)
142 KOG0547 Translocase of outer m 93.9 5.6 0.00012 40.5 17.5 102 137-250 463-565 (606)
143 PF13176 TPR_7: Tetratricopept 93.8 0.15 3.2E-06 32.3 4.3 29 56-84 1-29 (36)
144 PF10602 RPN7: 26S proteasome 93.7 1.7 3.8E-05 38.5 12.7 111 51-166 33-143 (177)
145 KOG2376 Signal recognition par 93.6 11 0.00023 39.4 20.5 156 30-209 93-251 (652)
146 PF04733 Coatomer_E: Coatomer 93.4 4.1 8.9E-05 39.2 15.5 44 27-74 12-55 (290)
147 PRK15179 Vi polysaccharide bio 93.3 9 0.0002 41.6 19.5 150 32-211 68-217 (694)
148 KOG0495 HAT repeat protein [RN 93.2 10 0.00023 40.1 18.6 187 29-252 597-783 (913)
149 KOG0548 Molecular co-chaperone 93.1 12 0.00026 38.5 22.1 89 143-250 365-454 (539)
150 COG3063 PilF Tfp pilus assembl 92.9 7.6 0.00016 35.8 16.9 98 139-252 106-203 (250)
151 PRK10803 tol-pal system protei 92.9 2.6 5.5E-05 40.0 13.2 96 146-253 153-248 (263)
152 KOG0495 HAT repeat protein [RN 92.8 7.1 0.00015 41.3 16.8 189 29-256 631-851 (913)
153 KOG1129 TPR repeat-containing 92.6 1.4 3.1E-05 42.5 10.8 186 30-250 237-423 (478)
154 COG3355 Predicted transcriptio 92.6 1.4 3E-05 36.6 9.3 81 347-427 34-120 (126)
155 COG1729 Uncharacterized protei 92.5 0.76 1.7E-05 43.2 8.8 104 20-169 144-248 (262)
156 KOG1941 Acetylcholine receptor 92.5 12 0.00025 36.9 18.5 112 137-255 84-195 (518)
157 COG4105 ComL DNA uptake lipopr 92.3 10 0.00022 35.6 16.4 151 54-256 34-201 (254)
158 COG5010 TadD Flp pilus assembl 92.1 3.3 7.1E-05 38.7 12.3 111 142-275 106-216 (257)
159 PRK14720 transcript cleavage f 92.1 8.4 0.00018 42.8 17.3 124 30-166 130-253 (906)
160 PF14559 TPR_19: Tetratricopep 92.0 0.51 1.1E-05 34.0 5.8 52 147-210 2-53 (68)
161 KOG3081 Vesicle coat complex C 91.8 6.5 0.00014 37.0 13.8 44 229-277 214-257 (299)
162 KOG1156 N-terminal acetyltrans 91.8 20 0.00042 37.9 21.7 98 141-250 148-247 (700)
163 KOG2300 Uncharacterized conser 91.6 14 0.00031 37.7 16.8 116 134-256 44-161 (629)
164 PF03704 BTAD: Bacterial trans 91.6 7.4 0.00016 32.8 14.3 66 134-211 60-125 (146)
165 PF13371 TPR_9: Tetratricopept 91.5 0.89 1.9E-05 33.3 6.7 59 142-212 1-59 (73)
166 PRK15431 ferrous iron transpor 91.4 0.42 9.1E-06 36.0 4.6 52 345-396 6-57 (78)
167 COG2976 Uncharacterized protei 91.3 7.9 0.00017 34.8 13.2 60 139-211 129-188 (207)
168 PF08784 RPA_C: Replication pr 91.0 0.24 5.2E-06 39.6 3.3 38 354-391 64-101 (102)
169 KOG2376 Signal recognition par 90.9 7.2 0.00016 40.6 14.2 131 32-167 357-489 (652)
170 COG2976 Uncharacterized protei 90.7 4.2 9E-05 36.5 10.9 98 139-252 92-189 (207)
171 PF12688 TPR_5: Tetratrico pep 90.6 7.4 0.00016 32.1 11.9 100 139-250 4-103 (120)
172 KOG0543 FKBP-type peptidyl-pro 90.6 2.7 5.8E-05 41.7 10.6 105 141-251 213-320 (397)
173 PRK02603 photosystem I assembl 90.6 9.1 0.0002 33.4 13.4 69 53-166 34-102 (172)
174 PF09295 ChAPs: ChAPs (Chs5p-A 90.5 7.3 0.00016 39.2 14.0 85 140-242 204-288 (395)
175 KOG3054 Uncharacterized conser 89.8 0.57 1.2E-05 42.8 4.8 55 347-401 206-260 (299)
176 KOG0550 Molecular chaperone (D 89.6 16 0.00035 36.6 14.9 197 33-252 149-351 (486)
177 TIGR00373 conserved hypothetic 89.4 3.9 8.5E-05 35.6 9.8 74 352-428 25-100 (158)
178 PF03704 BTAD: Bacterial trans 89.3 2.8 6.1E-05 35.5 8.8 53 28-84 74-126 (146)
179 PF10579 Rapsyn_N: Rapsyn N-te 89.2 1.5 3.2E-05 33.2 5.9 60 15-80 10-69 (80)
180 PRK15179 Vi polysaccharide bio 88.8 9.9 0.00021 41.3 14.3 119 29-166 99-218 (694)
181 PF13174 TPR_6: Tetratricopept 88.8 0.79 1.7E-05 27.6 3.7 29 56-84 2-30 (33)
182 PF13412 HTH_24: Winged helix- 88.5 1.1 2.5E-05 30.1 4.7 42 345-386 7-48 (48)
183 PF13431 TPR_17: Tetratricopep 88.5 0.57 1.2E-05 29.3 2.9 32 39-74 2-33 (34)
184 KOG1130 Predicted G-alpha GTPa 88.1 7.4 0.00016 38.9 11.4 178 32-217 171-350 (639)
185 PRK14720 transcript cleavage f 88.0 50 0.0011 37.0 22.0 137 50-209 27-176 (906)
186 KOG1585 Protein required for f 87.7 24 0.00052 33.0 20.5 26 294-319 227-252 (308)
187 PRK15331 chaperone protein Sic 87.6 18 0.0004 31.6 14.4 94 140-251 41-134 (165)
188 PF13512 TPR_18: Tetratricopep 87.6 17 0.00036 31.0 12.3 85 141-237 15-99 (142)
189 KOG4340 Uncharacterized conser 87.5 23 0.0005 34.0 13.9 182 29-250 23-206 (459)
190 KOG3616 Selective LIM binding 87.5 20 0.00044 38.5 14.8 101 60-163 712-818 (1636)
191 KOG0543 FKBP-type peptidyl-pro 87.4 33 0.00071 34.3 17.3 112 56-212 210-321 (397)
192 PRK06266 transcription initiat 87.3 6.2 0.00014 35.0 9.8 100 325-428 5-108 (178)
193 PF07719 TPR_2: Tetratricopept 86.9 2 4.3E-05 26.0 4.8 30 55-84 2-31 (34)
194 PF09295 ChAPs: ChAPs (Chs5p-A 86.8 10 0.00023 38.1 12.2 115 30-166 183-298 (395)
195 KOG1174 Anaphase-promoting com 86.3 29 0.00064 34.9 14.4 133 54-211 368-500 (564)
196 PF08220 HTH_DeoR: DeoR-like h 86.2 2.3 5E-05 30.0 5.3 51 344-398 3-53 (57)
197 smart00550 Zalpha Z-DNA-bindin 86.2 1.6 3.6E-05 32.0 4.7 43 345-387 10-54 (68)
198 KOG3616 Selective LIM binding 86.1 22 0.00047 38.3 14.1 62 137-211 733-794 (1636)
199 KOG0550 Molecular chaperone (D 85.8 27 0.00059 35.1 13.9 166 30-214 183-353 (486)
200 KOG1070 rRNA processing protei 85.5 66 0.0014 37.4 18.1 162 63-252 1467-1630(1710)
201 COG5010 TadD Flp pilus assembl 85.3 23 0.0005 33.2 12.7 120 60-205 106-225 (257)
202 PF00515 TPR_1: Tetratricopept 85.2 2.8 6.1E-05 25.5 4.8 30 55-84 2-31 (34)
203 PF13374 TPR_10: Tetratricopep 85.1 2.5 5.5E-05 26.8 4.8 31 54-84 2-32 (42)
204 PF13181 TPR_8: Tetratricopept 85.0 2.8 6.1E-05 25.4 4.7 30 55-84 2-31 (34)
205 KOG0624 dsRNA-activated protei 84.8 42 0.00091 33.0 21.1 168 27-214 117-301 (504)
206 PF13174 TPR_6: Tetratricopept 84.6 2.1 4.6E-05 25.6 4.0 29 139-167 3-31 (33)
207 PF13176 TPR_7: Tetratricopept 84.3 1.7 3.6E-05 27.3 3.4 27 140-166 3-29 (36)
208 KOG3785 Uncharacterized conser 83.7 26 0.00056 34.5 12.5 59 138-208 59-117 (557)
209 PF12688 TPR_5: Tetratrico pep 83.5 5.2 0.00011 33.0 7.0 63 21-84 5-68 (120)
210 PF02082 Rrf2: Transcriptional 83.4 8.5 0.00018 29.3 7.8 47 355-402 25-71 (83)
211 KOG0624 dsRNA-activated protei 82.7 52 0.0011 32.4 16.4 63 17-83 38-101 (504)
212 PF12802 MarR_2: MarR family; 82.4 4.2 9.1E-05 28.7 5.4 40 355-394 21-60 (62)
213 KOG2796 Uncharacterized conser 82.1 47 0.001 31.5 13.5 104 137-251 178-281 (366)
214 PF13374 TPR_10: Tetratricopep 81.4 3.3 7.1E-05 26.2 4.2 32 138-169 4-35 (42)
215 KOG0547 Translocase of outer m 81.3 70 0.0015 33.0 20.0 149 50-213 322-493 (606)
216 smart00347 HTH_MARR helix_turn 81.1 15 0.00032 28.3 8.7 40 354-393 23-62 (101)
217 COG1497 Predicted transcriptio 81.0 13 0.00029 34.3 9.1 72 347-426 17-88 (260)
218 TIGR03504 FimV_Cterm FimV C-te 80.7 2.1 4.6E-05 28.6 3.0 27 139-165 2-28 (44)
219 COG4235 Cytochrome c biogenesi 80.6 42 0.0009 32.2 12.7 117 112-250 135-255 (287)
220 KOG0553 TPR repeat-containing 80.2 31 0.00068 33.1 11.6 91 143-251 88-178 (304)
221 KOG4414 COP9 signalosome, subu 80.1 5.4 0.00012 33.7 5.8 82 293-378 74-155 (197)
222 PRK15363 pathogenicity island 79.9 12 0.00026 32.5 8.1 91 29-126 48-153 (157)
223 PF10345 Cohesin_load: Cohesin 79.7 92 0.002 33.4 25.6 218 30-253 74-332 (608)
224 PF13181 TPR_8: Tetratricopept 79.5 5.7 0.00012 24.0 4.6 30 183-212 2-31 (34)
225 smart00345 HTH_GNTR helix_turn 79.0 4.1 8.9E-05 28.3 4.3 36 351-386 15-51 (60)
226 PF01047 MarR: MarR family; I 78.8 5.4 0.00012 27.9 4.9 50 345-394 7-56 (59)
227 smart00344 HTH_ASNC helix_turn 77.7 5.1 0.00011 32.0 5.1 48 345-392 7-57 (108)
228 cd00090 HTH_ARSR Arsenical Res 77.6 12 0.00026 26.9 6.8 45 356-400 21-65 (78)
229 TIGR03879 near_KaiC_dom probab 77.4 3.4 7.3E-05 30.9 3.5 36 350-385 27-62 (73)
230 PF07719 TPR_2: Tetratricopept 77.1 5.2 0.00011 24.1 3.9 28 224-251 3-30 (34)
231 TIGR02337 HpaR homoprotocatech 76.8 23 0.00049 28.8 8.8 50 352-401 39-91 (118)
232 PF12862 Apc5: Anaphase-promot 76.0 22 0.00047 27.7 8.1 60 25-84 7-71 (94)
233 cd07377 WHTH_GntR Winged helix 75.7 9 0.00019 27.1 5.5 36 351-386 20-56 (66)
234 PLN03098 LPA1 LOW PSII ACCUMUL 75.3 8.6 0.00019 39.1 6.8 54 29-83 88-141 (453)
235 PRK11179 DNA-binding transcrip 75.1 5.7 0.00012 34.2 4.9 46 346-391 14-62 (153)
236 PF11817 Foie-gras_1: Foie gra 75.0 33 0.00071 32.1 10.4 80 115-200 157-236 (247)
237 PRK11169 leucine-responsive tr 74.8 6.5 0.00014 34.3 5.3 50 343-392 16-68 (164)
238 PF04703 FaeA: FaeA-like prote 74.7 5.3 0.00012 28.8 3.8 34 353-386 13-46 (62)
239 COG3118 Thioredoxin domain-con 74.6 72 0.0016 30.7 12.3 130 16-166 133-266 (304)
240 PRK09954 putative kinase; Prov 74.5 6.8 0.00015 38.9 6.0 54 346-399 8-64 (362)
241 KOG3617 WD40 and TPR repeat-co 73.9 1.3E+02 0.0028 33.3 15.1 27 139-165 915-941 (1416)
242 PF13404 HTH_AsnC-type: AsnC-t 73.9 6.8 0.00015 25.8 3.9 34 346-379 8-41 (42)
243 TIGR02010 IscR iron-sulfur clu 73.7 11 0.00025 31.6 6.4 46 354-399 24-69 (135)
244 smart00420 HTH_DEOR helix_turn 73.4 10 0.00022 25.4 5.0 34 354-387 13-46 (53)
245 COG4700 Uncharacterized protei 73.0 72 0.0016 28.8 12.4 94 140-250 128-221 (251)
246 smart00418 HTH_ARSR helix_turn 72.7 11 0.00024 26.2 5.3 46 353-398 8-53 (66)
247 PF13428 TPR_14: Tetratricopep 72.6 8.6 0.00019 25.1 4.3 29 139-167 4-32 (44)
248 PF10300 DUF3808: Protein of u 72.2 44 0.00095 34.6 11.4 86 150-250 247-333 (468)
249 smart00419 HTH_CRP helix_turn_ 72.2 6.3 0.00014 26.0 3.6 32 355-386 8-39 (48)
250 KOG1070 rRNA processing protei 72.1 2.1E+02 0.0045 33.7 21.4 166 19-209 1461-1627(1710)
251 PRK11014 transcriptional repre 71.8 16 0.00035 30.9 6.9 52 350-401 20-71 (141)
252 COG1522 Lrp Transcriptional re 71.5 7.5 0.00016 33.2 4.9 45 347-391 14-61 (154)
253 PF09986 DUF2225: Uncharacteri 71.5 18 0.00039 33.2 7.5 52 32-83 141-194 (214)
254 PF04733 Coatomer_E: Coatomer 70.5 10 0.00022 36.6 5.9 89 141-252 107-197 (290)
255 PF01022 HTH_5: Bacterial regu 70.2 14 0.00031 24.6 5.0 33 354-386 14-46 (47)
256 PRK11920 rirA iron-responsive 69.8 15 0.00032 31.7 6.3 53 345-397 13-66 (153)
257 PF00325 Crp: Bacterial regula 69.6 8.1 0.00017 23.9 3.2 30 356-385 3-32 (32)
258 PF08279 HTH_11: HTH domain; 69.2 15 0.00032 25.3 5.1 39 345-383 4-43 (55)
259 KOG3785 Uncharacterized conser 68.7 1.3E+02 0.0028 29.9 13.0 122 29-165 35-180 (557)
260 PF00515 TPR_1: Tetratricopept 68.7 11 0.00023 22.8 3.9 27 224-250 3-29 (34)
261 PRK10857 DNA-binding transcrip 68.7 18 0.00039 31.7 6.6 47 354-400 24-70 (164)
262 PF00392 GntR: Bacterial regul 68.7 14 0.00031 26.4 5.1 51 337-387 5-56 (64)
263 PF07721 TPR_4: Tetratricopept 68.1 7.7 0.00017 22.3 2.9 22 139-160 4-25 (26)
264 COG3071 HemY Uncharacterized e 68.1 1.4E+02 0.0029 30.0 14.9 57 140-209 332-388 (400)
265 PF09339 HTH_IclR: IclR helix- 67.5 13 0.00028 25.4 4.5 34 353-386 16-49 (52)
266 cd00092 HTH_CRP helix_turn_hel 67.4 8.5 0.00018 27.5 3.7 34 354-387 24-57 (67)
267 PRK10153 DNA-binding transcrip 67.4 1.6E+02 0.0035 30.9 14.5 59 141-212 425-483 (517)
268 KOG1125 TPR repeat-containing 66.8 15 0.00032 38.2 6.4 127 25-167 402-529 (579)
269 PF13545 HTH_Crp_2: Crp-like h 66.6 12 0.00025 27.7 4.4 45 354-402 27-71 (76)
270 PF13601 HTH_34: Winged helix 66.6 39 0.00084 25.6 7.3 49 346-394 5-53 (80)
271 COG1729 Uncharacterized protei 66.3 19 0.00041 34.0 6.6 65 28-94 190-254 (262)
272 KOG4234 TPR repeat-containing 66.2 67 0.0014 29.3 9.5 119 34-165 74-197 (271)
273 PF12862 Apc5: Anaphase-promot 66.0 58 0.0013 25.2 8.5 69 147-218 9-77 (94)
274 PF08221 HTH_9: RNA polymerase 65.8 24 0.00052 25.3 5.7 52 330-386 7-58 (62)
275 KOG3151 26S proteasome regulat 65.7 97 0.0021 28.7 10.7 76 293-373 135-210 (260)
276 PF13428 TPR_14: Tetratricopep 65.6 15 0.00033 23.9 4.3 29 56-84 3-31 (44)
277 TIGR02787 codY_Gpos GTP-sensin 65.5 24 0.00052 32.8 6.9 36 354-389 197-232 (251)
278 COG4700 Uncharacterized protei 65.1 1.1E+02 0.0023 27.7 12.0 99 139-252 92-190 (251)
279 PF01325 Fe_dep_repress: Iron 64.7 19 0.00041 25.7 4.9 38 349-386 16-53 (60)
280 PF01535 PPR: PPR repeat; Int 64.5 11 0.00023 22.0 3.2 26 57-82 3-28 (31)
281 TIGR00738 rrf2_super rrf2 fami 64.0 26 0.00056 29.0 6.5 42 354-395 24-65 (132)
282 KOG2047 mRNA splicing factor [ 62.8 70 0.0015 34.1 10.3 121 32-164 154-276 (835)
283 PF13812 PPR_3: Pentatricopept 62.7 20 0.00043 21.3 4.3 27 56-82 3-29 (34)
284 PF12840 HTH_20: Helix-turn-he 62.6 23 0.0005 25.0 5.1 40 348-387 17-56 (61)
285 PF09986 DUF2225: Uncharacteri 62.5 1.3E+02 0.0027 27.6 14.5 93 112-210 93-193 (214)
286 PF04184 ST7: ST7 protein; In 62.5 2E+02 0.0043 29.9 13.2 64 133-206 256-319 (539)
287 KOG4162 Predicted calmodulin-b 62.0 2.4E+02 0.0053 30.8 22.0 59 141-211 655-713 (799)
288 COG4235 Cytochrome c biogenesi 61.7 1.5E+02 0.0033 28.4 15.9 128 25-168 131-259 (287)
289 KOG3252 Uncharacterized conser 61.7 33 0.0007 30.5 6.6 93 293-399 96-189 (217)
290 PF12739 TRAPPC-Trs85: ER-Golg 61.6 1.9E+02 0.0041 29.3 17.3 182 53-254 207-402 (414)
291 KOG0551 Hsp90 co-chaperone CNS 61.4 50 0.0011 32.3 8.4 92 149-249 55-146 (390)
292 PF13463 HTH_27: Winged helix 61.1 36 0.00078 24.2 6.1 49 351-399 14-65 (68)
293 COG1959 Predicted transcriptio 61.0 26 0.00057 30.1 6.1 53 344-396 12-66 (150)
294 TIGR03504 FimV_Cterm FimV C-te 60.6 20 0.00044 23.8 4.1 25 59-83 4-28 (44)
295 PRK14165 winged helix-turn-hel 60.0 52 0.0011 30.2 8.1 69 347-416 13-81 (217)
296 TIGR00756 PPR pentatricopeptid 59.7 19 0.00042 21.2 3.8 26 57-82 3-28 (35)
297 PF08311 Mad3_BUB1_I: Mad3/BUB 59.2 1E+02 0.0022 25.5 9.2 79 114-208 44-125 (126)
298 KOG2047 mRNA splicing factor [ 58.8 1.7E+02 0.0036 31.5 12.2 42 181-226 657-698 (835)
299 TIGR01610 phage_O_Nterm phage 58.7 33 0.00071 26.9 5.8 47 352-400 44-90 (95)
300 PF06552 TOM20_plant: Plant sp 58.7 40 0.00087 30.0 6.8 51 32-86 51-105 (186)
301 PF01978 TrmB: Sugar-specific 58.6 19 0.00041 26.1 4.2 38 352-389 19-56 (68)
302 KOG2041 WD40 repeat protein [G 58.5 1.9E+02 0.0041 31.4 12.5 55 190-248 768-822 (1189)
303 PF14947 HTH_45: Winged helix- 58.4 50 0.0011 24.7 6.6 45 353-401 17-61 (77)
304 TIGR02944 suf_reg_Xantho FeS a 58.3 14 0.0003 30.7 3.8 41 354-394 24-64 (130)
305 KOG1127 TPR repeat-containing 58.3 1.2E+02 0.0026 34.2 11.5 63 141-208 635-697 (1238)
306 TIGR02702 SufR_cyano iron-sulf 57.7 51 0.0011 29.7 7.8 55 346-400 6-65 (203)
307 PRK10434 srlR DNA-bindng trans 56.5 18 0.00038 34.2 4.6 44 342-385 6-49 (256)
308 PF09743 DUF2042: Uncharacteri 56.3 55 0.0012 31.2 7.9 56 332-392 112-167 (272)
309 PRK10411 DNA-binding transcrip 56.3 19 0.00041 33.6 4.8 45 342-386 5-49 (240)
310 smart00346 HTH_ICLR helix_turn 56.2 26 0.00056 26.7 4.9 42 346-387 10-52 (91)
311 KOG0553 TPR repeat-containing 55.9 1.5E+02 0.0033 28.5 10.6 98 54-165 81-178 (304)
312 COG4783 Putative Zn-dependent 55.3 1.5E+02 0.0032 30.6 10.9 92 140-249 310-401 (484)
313 KOG1128 Uncharacterized conser 55.0 2.7E+02 0.0058 30.3 13.1 160 58-250 415-581 (777)
314 PF04967 HTH_10: HTH DNA bindi 54.8 18 0.0004 25.1 3.3 27 354-380 22-48 (53)
315 PF14669 Asp_Glu_race_2: Putat 54.5 1.7E+02 0.0036 26.5 12.0 152 58-214 55-213 (233)
316 PF14853 Fis1_TPR_C: Fis1 C-te 54.5 69 0.0015 22.2 6.1 28 56-83 3-30 (53)
317 KOG1155 Anaphase-promoting com 54.3 2.7E+02 0.0057 28.8 22.4 192 29-253 275-497 (559)
318 KOG0548 Molecular co-chaperone 54.3 43 0.00094 34.6 7.1 63 27-94 369-431 (539)
319 PF05331 DUF742: Protein of un 54.3 25 0.00055 28.7 4.5 42 345-388 47-88 (114)
320 PRK03573 transcriptional regul 54.0 1.1E+02 0.0024 25.6 8.8 43 355-397 46-88 (144)
321 TIGR01764 excise DNA binding d 53.9 43 0.00094 21.7 5.1 37 356-398 2-38 (49)
322 smart00028 TPR Tetratricopepti 53.9 27 0.00058 19.2 3.7 29 55-83 2-30 (34)
323 KOG2114 Vacuolar assembly/sort 53.7 98 0.0021 34.0 9.8 70 32-105 350-421 (933)
324 KOG1173 Anaphase-promoting com 53.6 2.9E+02 0.0064 29.1 17.5 165 54-251 244-409 (611)
325 COG5071 RPN5 26S proteasome re 53.5 2.2E+02 0.0048 27.6 13.3 172 29-207 45-237 (439)
326 PF07106 TBPIP: Tat binding pr 53.2 1.1E+02 0.0023 26.7 8.9 55 344-400 8-62 (169)
327 PF01726 LexA_DNA_bind: LexA D 52.8 32 0.00069 25.0 4.5 32 355-386 25-57 (65)
328 PRK11512 DNA-binding transcrip 52.2 1.2E+02 0.0027 25.3 8.9 45 354-398 53-97 (144)
329 PRK13509 transcriptional repre 52.2 24 0.00053 33.1 4.8 45 342-386 6-50 (251)
330 PF06163 DUF977: Bacterial pro 52.2 38 0.00081 28.1 5.2 64 346-421 17-81 (127)
331 PLN03098 LPA1 LOW PSII ACCUMUL 52.1 63 0.0014 33.0 7.8 64 139-211 78-141 (453)
332 PF12728 HTH_17: Helix-turn-he 51.9 52 0.0011 22.0 5.3 38 356-399 2-39 (51)
333 PRK03902 manganese transport t 51.9 1.3E+02 0.0028 25.3 8.9 51 348-401 15-65 (142)
334 PF02002 TFIIE_alpha: TFIIE al 51.8 17 0.00037 29.0 3.2 48 353-400 25-74 (105)
335 PF13041 PPR_2: PPR repeat fam 51.8 31 0.00067 23.0 4.1 29 55-83 4-32 (50)
336 smart00531 TFIIE Transcription 51.8 57 0.0012 27.9 6.6 74 352-428 12-90 (147)
337 PF04545 Sigma70_r4: Sigma-70, 51.0 38 0.00083 22.7 4.5 29 353-381 18-46 (50)
338 PRK10906 DNA-binding transcrip 50.6 25 0.00055 33.0 4.7 45 342-386 6-50 (252)
339 PF13730 HTH_36: Helix-turn-he 50.5 21 0.00046 24.4 3.2 30 356-385 26-55 (55)
340 PF08631 SPO22: Meiosis protei 49.6 2.3E+02 0.0051 26.8 18.4 101 134-251 82-186 (278)
341 PF12854 PPR_1: PPR repeat 49.5 29 0.00063 21.3 3.3 27 54-80 7-33 (34)
342 PRK04424 fatty acid biosynthes 49.4 19 0.00042 32.1 3.5 44 342-385 8-51 (185)
343 PF05584 Sulfolobus_pRN: Sulfo 49.2 52 0.0011 24.5 5.0 32 355-386 18-49 (72)
344 KOG4555 TPR repeat-containing 48.9 97 0.0021 26.2 7.1 62 31-97 58-119 (175)
345 PRK10870 transcriptional repre 47.5 2E+02 0.0043 25.3 12.3 44 354-397 70-113 (176)
346 PF10516 SHNi-TPR: SHNi-TPR; 47.4 46 0.001 21.3 4.0 22 229-250 8-29 (38)
347 PF04097 Nic96: Nup93/Nic96; 47.3 1.8E+02 0.0039 31.3 11.0 125 33-165 394-534 (613)
348 PF10516 SHNi-TPR: SHNi-TPR; 47.0 35 0.00076 21.9 3.4 36 183-218 2-37 (38)
349 PF10771 DUF2582: Protein of u 46.5 65 0.0014 23.5 5.2 49 348-398 15-63 (65)
350 PF14561 TPR_20: Tetratricopep 46.3 74 0.0016 24.7 5.9 67 35-106 7-73 (90)
351 PF10668 Phage_terminase: Phag 45.2 36 0.00078 24.4 3.6 32 347-378 14-45 (60)
352 PF11207 DUF2989: Protein of u 44.6 38 0.00082 30.7 4.5 45 29-73 153-197 (203)
353 PHA02943 hypothetical protein; 44.3 2.1E+02 0.0046 24.7 9.4 55 346-402 16-70 (165)
354 COG1349 GlpR Transcriptional r 43.6 35 0.00077 32.1 4.5 45 342-386 6-50 (253)
355 TIGR01884 cas_HTH CRISPR locus 43.3 77 0.0017 28.6 6.5 47 352-399 154-200 (203)
356 PF04760 IF2_N: Translation in 43.2 25 0.00055 24.2 2.6 37 355-391 3-41 (54)
357 KOG3677 RNA polymerase I-assoc 43.1 3.8E+02 0.0081 27.3 18.2 200 186-399 239-484 (525)
358 TIGR02844 spore_III_D sporulat 42.6 37 0.0008 25.8 3.6 34 342-376 7-40 (80)
359 PF14689 SPOB_a: Sensor_kinase 42.5 1.2E+02 0.0027 21.5 6.5 34 133-166 20-53 (62)
360 PF04492 Phage_rep_O: Bacterio 41.7 67 0.0014 25.6 5.1 35 351-385 50-84 (100)
361 PRK09334 30S ribosomal protein 41.1 80 0.0017 24.4 5.2 38 351-388 37-74 (86)
362 KOG4162 Predicted calmodulin-b 41.0 5.2E+02 0.011 28.3 18.6 63 182-250 650-712 (799)
363 PF05470 eIF-3c_N: Eukaryotic 40.7 4.9E+02 0.011 27.9 18.5 66 18-84 221-296 (595)
364 PRK13777 transcriptional regul 40.4 2.2E+02 0.0048 25.4 8.8 48 349-396 53-100 (185)
365 PF10300 DUF3808: Protein of u 40.2 4.4E+02 0.0095 27.2 12.9 103 130-248 264-373 (468)
366 KOG2168 Cullins [Cell cycle co 39.8 3.5E+02 0.0075 30.0 11.4 29 137-165 706-736 (835)
367 KOG2471 TPR repeat-containing 39.7 4.6E+02 0.01 27.4 11.6 71 183-253 241-314 (696)
368 cd06171 Sigma70_r4 Sigma70, re 39.7 73 0.0016 20.7 4.6 27 354-380 25-51 (55)
369 PF08281 Sigma70_r4_2: Sigma-7 39.5 33 0.00071 23.3 2.7 29 352-380 23-51 (54)
370 PRK10681 DNA-binding transcrip 39.5 41 0.00089 31.6 4.2 39 342-380 8-46 (252)
371 PRK09802 DNA-binding transcrip 39.4 45 0.00098 31.7 4.5 45 342-386 18-62 (269)
372 PF14853 Fis1_TPR_C: Fis1 C-te 39.1 39 0.00084 23.5 2.9 41 19-61 3-44 (53)
373 PF04910 Tcf25: Transcriptiona 38.1 4E+02 0.0087 26.5 11.2 134 32-189 10-152 (360)
374 KOG1127 TPR repeat-containing 38.1 6.6E+02 0.014 28.7 18.8 197 17-251 459-659 (1238)
375 COG3629 DnrI DNA-binding trans 37.9 3.7E+02 0.0081 25.7 12.8 66 134-211 151-216 (280)
376 PF12643 MazG-like: MazG-like 37.8 66 0.0014 25.5 4.4 48 360-428 50-97 (98)
377 PF15015 NYD-SP12_N: Spermatog 37.7 4.6E+02 0.01 26.8 12.4 79 190-274 236-315 (569)
378 KOG4555 TPR repeat-containing 37.0 2.6E+02 0.0057 23.7 12.4 112 143-272 50-165 (175)
379 PF08280 HTH_Mga: M protein tr 37.0 83 0.0018 22.1 4.5 39 342-380 6-44 (59)
380 PF05843 Suf: Suppressor of fo 36.9 3.7E+02 0.0081 25.5 11.1 90 141-248 6-96 (280)
381 PF03081 Exo70: Exo70 exocyst 36.8 86 0.0019 31.0 6.3 81 294-379 291-371 (371)
382 COG2345 Predicted transcriptio 36.7 82 0.0018 28.9 5.5 43 346-388 16-58 (218)
383 PF04348 LppC: LppC putative l 36.2 12 0.00026 39.4 0.0 99 139-249 27-125 (536)
384 COG3947 Response regulator con 35.9 1.6E+02 0.0035 28.4 7.3 67 128-206 266-337 (361)
385 TIGR01889 Staph_reg_Sar staphy 35.8 2.2E+02 0.0048 22.6 7.9 43 354-396 42-84 (109)
386 COG3629 DnrI DNA-binding trans 35.8 2E+02 0.0043 27.5 8.1 52 29-84 166-217 (280)
387 PRK10153 DNA-binding transcrip 35.3 1.4E+02 0.003 31.4 7.7 60 184-250 422-481 (517)
388 PF08672 APC2: Anaphase promot 35.2 61 0.0013 23.1 3.5 24 365-388 31-54 (60)
389 KOG2235 Uncharacterized conser 35.1 1.5E+02 0.0033 31.4 7.5 61 332-399 115-175 (776)
390 PF04124 Dor1: Dor1-like famil 34.8 1.6E+02 0.0036 28.8 7.8 26 59-84 111-136 (338)
391 PF13542 HTH_Tnp_ISL3: Helix-t 34.7 1E+02 0.0022 20.6 4.6 24 356-379 28-51 (52)
392 PRK15331 chaperone protein Sic 34.6 98 0.0021 27.1 5.4 50 29-82 50-99 (165)
393 PF08631 SPO22: Meiosis protei 34.5 4E+02 0.0087 25.1 15.7 111 137-252 36-151 (278)
394 PF10007 DUF2250: Uncharacteri 34.4 83 0.0018 24.6 4.5 40 347-386 13-52 (92)
395 PRK10141 DNA-binding transcrip 33.7 2.7E+02 0.0058 22.8 8.9 70 355-426 30-101 (117)
396 PRK11050 manganese transport r 32.7 2.4E+02 0.0052 24.1 7.6 45 354-401 50-94 (152)
397 PF10078 DUF2316: Uncharacteri 32.5 44 0.00096 26.0 2.6 24 354-377 22-45 (89)
398 KOG3617 WD40 and TPR repeat-co 32.0 7.7E+02 0.017 27.7 19.9 31 54-84 967-997 (1416)
399 PRK11534 DNA-binding transcrip 32.0 97 0.0021 28.2 5.4 62 335-398 10-71 (224)
400 PF00440 TetR_N: Bacterial reg 32.0 67 0.0015 21.2 3.2 22 351-372 12-33 (47)
401 PRK13918 CRP/FNR family transc 31.9 1.1E+02 0.0023 27.1 5.6 43 355-401 149-191 (202)
402 KOG3364 Membrane protein invol 31.9 1.7E+02 0.0037 24.8 6.1 51 31-83 50-100 (149)
403 PF14493 HTH_40: Helix-turn-he 31.8 54 0.0012 25.3 3.1 33 354-386 12-45 (91)
404 PRK04214 rbn ribonuclease BN/u 31.4 1.6E+02 0.0035 29.8 7.3 72 354-427 309-391 (412)
405 PF03297 Ribosomal_S25: S25 ri 31.1 2E+02 0.0043 23.2 6.2 48 350-397 54-101 (105)
406 PF09613 HrpB1_HrpK: Bacterial 30.9 2.8E+02 0.006 24.2 7.5 63 181-249 9-71 (160)
407 COG3413 Predicted DNA binding 30.7 51 0.0011 30.1 3.2 27 354-380 177-203 (215)
408 PRK04239 hypothetical protein; 30.4 39 0.00084 27.4 2.0 52 340-391 37-88 (110)
409 COG4367 Uncharacterized protei 30.1 52 0.0011 25.4 2.5 24 353-376 21-44 (97)
410 KOG1498 26S proteasome regulat 30.0 5.9E+02 0.013 25.7 15.1 180 15-208 30-238 (439)
411 PF12324 HTH_15: Helix-turn-he 29.7 91 0.002 23.5 3.8 35 346-380 29-63 (77)
412 PF09613 HrpB1_HrpK: Bacterial 29.3 2.7E+02 0.0059 24.2 7.2 56 141-208 15-70 (160)
413 TIGR03338 phnR_burk phosphonat 29.1 1.7E+02 0.0038 26.1 6.5 63 335-399 14-76 (212)
414 KOG1128 Uncharacterized conser 29.0 2.1E+02 0.0045 31.1 7.5 104 137-251 399-514 (777)
415 PF04539 Sigma70_r3: Sigma-70 28.9 86 0.0019 23.1 3.7 33 347-379 11-44 (78)
416 COG1846 MarR Transcriptional r 28.8 1.8E+02 0.004 22.8 6.1 36 359-394 40-75 (126)
417 PF08424 NRDE-2: NRDE-2, neces 28.6 5.5E+02 0.012 24.9 15.6 127 33-168 48-186 (321)
418 PF12793 SgrR_N: Sugar transpo 28.5 2.3E+02 0.005 23.1 6.4 47 354-400 18-67 (115)
419 cd04761 HTH_MerR-SF Helix-Turn 28.5 92 0.002 20.3 3.5 37 357-398 2-38 (49)
420 KOG0985 Vesicle coat protein c 28.4 9.7E+02 0.021 27.7 14.2 27 21-47 988-1015(1666)
421 KOG2034 Vacuolar sorting prote 28.3 1.3E+02 0.0028 33.3 6.0 56 190-254 366-421 (911)
422 PF14561 TPR_20: Tetratricopep 28.2 1.6E+02 0.0035 22.8 5.2 48 29-78 35-82 (90)
423 PF01984 dsDNA_bind: Double-st 28.2 42 0.00091 27.1 1.9 22 370-391 62-83 (107)
424 COG3107 LppC Putative lipoprot 28.1 3.7E+02 0.0081 28.2 8.9 95 141-249 68-163 (604)
425 PF09670 Cas_Cas02710: CRISPR- 28.1 6.2E+02 0.013 25.3 14.1 74 9-84 123-199 (379)
426 smart00421 HTH_LUXR helix_turn 27.8 1.3E+02 0.0029 19.8 4.4 29 353-381 16-44 (58)
427 KOG3951 Uncharacterized conser 27.8 4.6E+02 0.0099 24.7 8.6 100 2-109 15-115 (321)
428 PF04053 Coatomer_WDAD: Coatom 27.7 2.7E+02 0.0059 28.6 8.2 26 140-165 351-376 (443)
429 PRK03837 transcriptional regul 27.7 2.1E+02 0.0045 26.2 6.9 63 335-399 16-79 (241)
430 TIGR02561 HrpB1_HrpK type III 27.7 2.4E+02 0.0052 24.3 6.4 64 181-250 9-72 (153)
431 KOG3431 Apoptosis-related prot 27.7 50 0.0011 27.1 2.2 53 339-391 39-91 (129)
432 PF13518 HTH_28: Helix-turn-he 27.5 69 0.0015 21.3 2.7 36 355-391 12-47 (52)
433 PRK10046 dpiA two-component re 27.4 1.4E+02 0.0029 27.1 5.5 44 349-392 171-214 (225)
434 KOG2066 Vacuolar assembly/sort 27.0 7.1E+02 0.015 27.5 11.1 25 141-165 510-534 (846)
435 PF08679 DsrD: Dissimilatory s 26.8 92 0.002 22.7 3.2 35 352-386 16-51 (67)
436 PHA02591 hypothetical protein; 26.8 60 0.0013 24.4 2.3 25 354-378 58-82 (83)
437 PF10938 YfdX: YfdX protein; 26.5 3.9E+02 0.0084 23.0 7.8 112 140-251 6-146 (155)
438 KOG4648 Uncharacterized conser 26.5 4.8E+02 0.01 25.9 8.9 94 57-165 100-194 (536)
439 PRK10225 DNA-binding transcrip 26.5 2.2E+02 0.0048 26.4 6.9 64 334-399 11-75 (257)
440 TIGR02812 fadR_gamma fatty aci 26.3 1.9E+02 0.0041 26.4 6.3 62 336-399 10-72 (235)
441 cd00280 TRFH Telomeric Repeat 26.0 2.4E+02 0.0051 25.3 6.3 52 32-83 85-140 (200)
442 COG1675 TFA1 Transcription ini 26.0 4.7E+02 0.01 23.2 8.4 50 355-404 32-83 (176)
443 PF11817 Foie-gras_1: Foie gra 25.9 5E+02 0.011 24.0 9.1 75 201-275 157-232 (247)
444 COG5187 RPN7 26S proteasome re 25.9 6.2E+02 0.013 24.6 15.2 126 34-167 93-223 (412)
445 PF10366 Vps39_1: Vacuolar sor 25.2 95 0.0021 25.0 3.5 27 56-82 41-67 (108)
446 KOG3081 Vesicle coat complex C 25.1 6.1E+02 0.013 24.3 15.9 148 30-210 69-235 (299)
447 PF07079 DUF1347: Protein of u 25.1 6.5E+02 0.014 26.0 9.9 102 143-258 13-115 (549)
448 PF01638 HxlR: HxlR-like helix 25.1 3.1E+02 0.0068 20.9 7.3 65 354-418 17-86 (90)
449 PF04190 DUF410: Protein of un 25.1 4.4E+02 0.0096 24.8 8.6 44 201-248 69-116 (260)
450 PF09743 DUF2042: Uncharacteri 24.6 1.7E+02 0.0037 27.9 5.7 44 345-391 185-228 (272)
451 cd06170 LuxR_C_like C-terminal 24.4 94 0.002 20.7 3.0 29 353-381 13-41 (57)
452 COG1321 TroR Mn-dependent tran 24.4 1.4E+02 0.0031 25.7 4.7 50 349-401 18-67 (154)
453 TIGR00498 lexA SOS regulatory 24.3 1.1E+02 0.0024 27.3 4.2 37 356-392 26-63 (199)
454 PRK14511 maltooligosyl trehalo 24.1 59 0.0013 36.2 2.7 36 360-395 263-305 (879)
455 PRK11753 DNA-binding transcrip 23.8 1.6E+02 0.0034 26.2 5.2 43 355-401 168-210 (211)
456 KOG4234 TPR repeat-containing 23.7 4.1E+02 0.0089 24.4 7.4 59 26-84 105-164 (271)
457 PRK11414 colanic acid/biofilm 23.6 1.6E+02 0.0035 26.7 5.2 54 335-388 14-67 (221)
458 PLN03083 E3 UFM1-protein ligas 23.6 2.5E+02 0.0054 31.1 7.2 58 333-398 117-174 (803)
459 PRK15090 DNA-binding transcrip 23.3 1.5E+02 0.0033 27.7 5.1 42 346-387 19-60 (257)
460 KOG1915 Cell cycle control pro 23.1 8.8E+02 0.019 25.3 17.3 133 61-209 329-464 (677)
461 PF09202 Rio2_N: Rio2, N-termi 23.1 2.1E+02 0.0045 21.8 4.8 46 350-395 19-64 (82)
462 PRK04217 hypothetical protein; 22.9 1.4E+02 0.0031 24.2 4.1 43 352-394 55-104 (110)
463 PF05920 Homeobox_KN: Homeobox 22.8 85 0.0018 20.3 2.3 29 351-379 8-37 (40)
464 COG1747 Uncharacterized N-term 22.7 9.2E+02 0.02 25.4 16.6 97 59-165 137-234 (711)
465 COG1802 GntR Transcriptional r 22.5 1.5E+02 0.0032 27.1 4.8 55 334-388 18-72 (230)
466 COG4565 CitB Response regulato 22.5 6.1E+02 0.013 23.3 9.1 49 344-392 161-210 (224)
467 PRK10402 DNA-binding transcrip 22.4 2.4E+02 0.0052 25.6 6.2 42 356-401 170-211 (226)
468 COG3280 TreY Maltooligosyl tre 22.3 58 0.0013 35.3 2.1 41 353-395 261-308 (889)
469 KOG4648 Uncharacterized conser 22.1 1.8E+02 0.0038 28.8 5.2 57 141-209 102-158 (536)
470 PF04297 UPF0122: Putative hel 22.0 85 0.0018 25.1 2.6 36 345-380 21-58 (101)
471 PRK12514 RNA polymerase sigma 22.0 1.8E+02 0.004 25.1 5.1 28 353-380 143-170 (179)
472 TIGR02394 rpoS_proteo RNA poly 21.9 1.6E+02 0.0035 28.0 5.0 32 350-381 237-268 (285)
473 PF13384 HTH_23: Homeodomain-l 21.7 99 0.0021 20.5 2.6 29 355-383 17-45 (50)
474 cd04762 HTH_MerR-trunc Helix-T 21.6 96 0.0021 19.8 2.5 37 357-398 2-38 (49)
475 PF10975 DUF2802: Protein of u 21.4 93 0.002 23.0 2.5 22 355-376 44-65 (70)
476 PF13613 HTH_Tnp_4: Helix-turn 21.3 1.5E+02 0.0033 20.2 3.5 36 345-380 9-44 (53)
477 PF14689 SPOB_a: Sensor_kinase 21.3 2.2E+02 0.0048 20.2 4.5 27 58-84 27-53 (62)
478 PRK04984 fatty acid metabolism 20.9 2.8E+02 0.0062 25.3 6.4 61 336-398 11-72 (239)
479 KOG2316 Predicted ATPase (PP-l 20.7 68 0.0015 29.4 1.9 45 350-395 117-167 (277)
480 PRK09464 pdhR transcriptional 20.6 2.9E+02 0.0063 25.5 6.5 63 335-399 13-76 (254)
481 PF14394 DUF4423: Domain of un 20.6 5.8E+02 0.013 22.3 9.2 53 345-398 28-88 (171)
482 PF06971 Put_DNA-bind_N: Putat 20.5 1E+02 0.0023 21.1 2.4 25 353-377 26-50 (50)
483 PF01476 LysM: LysM domain; I 20.4 90 0.0019 19.9 2.1 19 357-375 8-26 (44)
484 PF06969 HemN_C: HemN C-termin 20.4 3.2E+02 0.0069 19.2 6.1 45 352-400 17-62 (66)
485 PRK15418 transcriptional regul 20.2 1.6E+02 0.0036 28.6 4.7 47 347-393 19-67 (318)
No 1
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-79 Score=552.46 Aligned_cols=416 Identities=69% Similarity=1.075 Sum_probs=401.9
Q ss_pred cchhhHHHHHHhhcccCCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhh
Q 014143 12 EFTVSRVLCSILEKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN 91 (430)
Q Consensus 12 ~~~~~~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~ 91 (430)
+-.|.-++-||++|+++.++|++|+..|+++++.++++++|+||+++|++++++..|+++++++.|+++++++++.++++
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCC
Q 014143 92 YSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDG 171 (430)
Q Consensus 92 ~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~ 171 (430)
+.+|+|+.++++++.+. +...+++||++|++.++.+.|+|+||+++.+|+++|++.|+|....+++.+++..|.+.+|
T Consensus 103 ySEKsIN~IlDyiStS~--~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSK--NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 99999999999999754 4889999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 172 TDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 172 ~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
.+|.++++.++|+|+.++++|..++|..+.+.+|.+|.-+.+++|||.++|.+++|+|++|+.+|.|.+|...|+|||++
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcchhHHHHHHHHHHHHHhhCCCCCCCCccccccCCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHH
Q 014143 252 YDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIR 331 (430)
Q Consensus 252 ~~~~~~~~~~~~lky~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~ 331 (430)
|++.|+|++..||+|++|+.+|..+++|||+++++.||+++|++-+|..|+.||.+.|+.+|+.++..++..++.|||+.
T Consensus 261 YDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~NdI~eFE~Il~~~~~~IM~DpFIR 340 (440)
T KOG1464|consen 261 YDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVAAYQNNDIIEFERILKSNRSNIMDDPFIR 340 (440)
T ss_pred ccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHHhcccHHHHHHHHHhhhccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCCccc-hHHHH
Q 014143 332 NYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGM-KKYTA 410 (430)
Q Consensus 332 ~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~-~~~~~ 410 (430)
+|+.+|.+++|.+.|+++++||++|.+++|++.|++|+.+||.+++.+|+|..|+|+||++++++...+....+ ..+..
T Consensus 341 eh~EdLl~niRTQVLlkLIkPYt~i~Ipfis~~Lnv~~~dV~~LLV~~ILD~~i~g~Ide~n~~l~~~~~~~s~~k~~~a 420 (440)
T KOG1464|consen 341 EHIEDLLRNIRTQVLLKLIKPYTNIGIPFISKELNVPEADVESLLVSCILDDTIDGRIDEVNQYLELDKSKNSGSKLYKA 420 (440)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCchhhHhhcCCCHHHHHHHHHHHHhccccccchHHhhhHhccCccCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998765433 45999
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 014143 411 IDKWNSQLRSLYQTVSNRV 429 (430)
Q Consensus 411 l~~w~~~v~~l~~~v~~~~ 429 (430)
+..|++++++|...|..|+
T Consensus 421 l~kW~~ql~Sl~~~i~sr~ 439 (440)
T KOG1464|consen 421 LDKWNNQLKSLQSNIVSRV 439 (440)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999999998886
No 2
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-63 Score=458.64 Aligned_cols=388 Identities=22% Similarity=0.357 Sum_probs=348.3
Q ss_pred HHhhcccCCCC-HHHHHHHHHHhhcCCc------cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhH
Q 014143 21 SILEKGLVETD-PEGALAGFAEVVAMEP------EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYS 93 (430)
Q Consensus 21 ~~~ak~~~~~~-~~~Ai~~~~~ii~~~~------~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~ 93 (430)
..+|......+ ..+++..|+.++++.. +..+.+..++-+++++|.+.|+.+++.++++++++++ ..++|+++
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~-~~v~Kaka 86 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFL-SSVSKAKA 86 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH-HHhhhHHH
Confidence 67788888777 6999999999998521 1234466788889999999999999999999999999 88999999
Q ss_pred HHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhh-hhhhHHHH--hHHHHHHHHHhccHHHHHHHHHHHHhhccCCC
Q 014143 94 EKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK-NERLWFKT--NLKLCKIWFDMGEYGRMSKILKELHKSCQRED 170 (430)
Q Consensus 94 ~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~-~~kl~~r~--~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~ 170 (430)
+|+||.+++.+..+|+ .....++.|.+||+|++ ++|.|+|. .-||+.+|++.++|.+|+.++..+..++...
T Consensus 87 aKlvR~Lvd~~~~~~~----~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl- 161 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDD----GTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL- 161 (411)
T ss_pred HHHHHHHHHHHccCCC----CcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc-
Confidence 9999999999998776 23478899999999985 55577755 4499999999999999998777777766654
Q ss_pred CCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-chhHHHHHHhhhHhhhhhhcHHHHHHHHHHHH
Q 014143 171 GTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (430)
Q Consensus 171 ~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (430)
|| +..++++++++++.|+.++|.+||++.++.|++.+|++++ |.+||.+++++|++|+.++||++|++||||||
T Consensus 162 --DD---K~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAf 236 (411)
T KOG1463|consen 162 --DD---KILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAF 236 (411)
T ss_pred --cc---ccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHH
Confidence 46 4889999999999999999999999999999999999996 88999999999999999999999999999999
Q ss_pred Hhhhhhcc-hhHHHHHHHHHHHHHhhCCC--CC-CCCccccccCCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhc
Q 014143 250 KNYDEAGN-QRRIQCLKYLVLANMLMESE--VN-PFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIM 325 (430)
Q Consensus 250 ~~~~~~~~-~~~~~~lky~~l~~lL~~~~--~~-~~~~~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~ 325 (430)
++|+..++ .++...||||+||+||.+.. ++ .+.++.+..|. +|.+++|+.+..||.++++..|+..|.+|..++.
T Consensus 237 Egf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~-g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~ 315 (411)
T KOG1463|consen 237 EGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYA-GRDIDAMKAVAEAFGNRSLKDFEKALADYKKELA 315 (411)
T ss_pred ccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhcc-CcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHh
Confidence 99999887 49999999999999987643 32 36677777776 6999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCCccc
Q 014143 326 DDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGM 405 (430)
Q Consensus 326 ~D~~l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~ 405 (430)
.||+++.|++.|++++.++||+++++|||+|.+++||+.+|+|++.||+.|++||+|+++.|.+||++||++++++++.+
T Consensus 316 ~D~ivr~Hl~~Lyd~lLEknl~riIEPyS~Vei~hIA~~IGl~~~~VEkKLsqMILDKkf~G~LDQg~g~Liv~~e~~~d 395 (411)
T KOG1463|consen 316 EDPIVRSHLQSLYDNLLEKNLCRIIEPYSRVEISHIAEVIGLDVPQVEKKLSQMILDKKFYGTLDQGEGCLIVFEEPPAD 395 (411)
T ss_pred cChHHHHHHHHHHHHHHHHhHHHHcCchhhhhHHHHHHHHCCCcHHHHHHHHHHHHHHHhhcccccCCCeEEEeCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 014143 406 KKYTAIDKWNSQLRS 420 (430)
Q Consensus 406 ~~~~~l~~w~~~v~~ 420 (430)
+.|+...+-..++++
T Consensus 396 ~~y~~aLetI~~m~k 410 (411)
T KOG1463|consen 396 NTYDAALETIQNMGK 410 (411)
T ss_pred hHHHHHHHHHHhccC
Confidence 999988777666653
No 3
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-55 Score=394.22 Aligned_cols=396 Identities=20% Similarity=0.314 Sum_probs=346.3
Q ss_pred HHhhcccCC-CCHHHHHHHHHHhhcCCcc----chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 014143 21 SILEKGLVE-TDPEGALAGFAEVVAMEPE----KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK 95 (430)
Q Consensus 21 ~~~ak~~~~-~~~~~Ai~~~~~ii~~~~~----~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k 95 (430)
+..|....+ .++++|+..|++++.+..+ -.+....++-.+.++|...|++..+.+.++++++.+ ..+++++++|
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m-~~ftk~k~~K 85 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAM-EDFTKPKITK 85 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHH-HHhcchhHHH
Confidence 344554444 4699999999999998431 234467788999999999999999999999999999 7789999999
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHh-hhhhhHHHH--hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCC
Q 014143 96 CINNIMDFVSGSASQNFSLLREFYQTTLKALEEA-KNERLWFKT--NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT 172 (430)
Q Consensus 96 ~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~-~~~kl~~r~--~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~ 172 (430)
+++.+++.++..|+ ....++.++-.+++|+ .++|.|+|. ..+++.++++.|+|.+|+.++..+..++...
T Consensus 86 iirtLiekf~~~~d----sl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~--- 158 (421)
T COG5159 86 IIRTLIEKFPYSSD----SLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY--- 158 (421)
T ss_pred HHHHHHHhcCCCCc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh---
Confidence 99999999987665 4567888888899998 456677765 4599999999999999987766666655543
Q ss_pred cchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-chhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 173 DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 173 ~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
|| +..++++|+.++++|++.+|.+++++.++.|++.++++++ |.++|.+++++|++|+.++||++|++||+|+|++
T Consensus 159 DD---K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 159 DD---KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred cC---ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 45 4778999999999999999999999999999999999986 6789999999999999999999999999999999
Q ss_pred hhhhc-chhHHHHHHHHHHHHHhhCCC--CC-CCCcccccc-CCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcC
Q 014143 252 YDEAG-NQRRIQCLKYLVLANMLMESE--VN-PFDGQEAKP-YKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMD 326 (430)
Q Consensus 252 ~~~~~-~~~~~~~lky~~l~~lL~~~~--~~-~~~~~~~~~-~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~ 326 (430)
|+... +.++...|+||+|+.||.+.. +. .+.++.+.+ |. ++.+++|..+.++|.|+++..|+..|++|.+++.+
T Consensus 236 ft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~-~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~ 314 (421)
T COG5159 236 FTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYD-DRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQ 314 (421)
T ss_pred cccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhh-hhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhcc
Confidence 98654 458888999999999987642 22 356666665 54 68899999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCCccch
Q 014143 327 DPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMK 406 (430)
Q Consensus 327 D~~l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~ 406 (430)
||++..|++.|++.+.++||.++++||++|.+++||+.+|+++.+||..+++||.|+-+.|.+||++||+++.++++.++
T Consensus 315 D~~iRsHl~~LYD~LLe~Nl~kiiEPfs~VeishIa~viGldt~qvEgKLsqMILDKifyG~LDqg~gcLivy~ep~qd~ 394 (421)
T COG5159 315 DSFIRSHLQYLYDVLLEKNLVKIIEPFSVVEISHIADVIGLDTNQVEGKLSQMILDKIFYGTLDQGDGCLIVYGEPAQDN 394 (421)
T ss_pred CHHHHHHHHHHHHHHHHhhhhhhcCcceeeehhHHHHHhcccHHHHHHHHHHHHHHHHHHhhhccCCceEEEeCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 014143 407 KYTAIDKWNSQLRSLYQTVSNR 428 (430)
Q Consensus 407 ~~~~l~~w~~~v~~l~~~v~~~ 428 (430)
.|+...+-.++++.+.....++
T Consensus 395 tyd~ale~v~~l~~vVd~l~ek 416 (421)
T COG5159 395 TYDEALEQVEALDCVVDSLYEK 416 (421)
T ss_pred hHHHHHHHHHHhhhHHHHHHHH
Confidence 9998888888888877765544
No 4
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-47 Score=355.82 Aligned_cols=388 Identities=14% Similarity=0.222 Sum_probs=334.6
Q ss_pred HHHHhhcccCCCCHHHHHHHHHHhhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 014143 19 LCSILEKGLVETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (430)
Q Consensus 19 ~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~ 96 (430)
...+.|.++.+.+.++|++.+....++.. +|.....|++..++++|+..++|+.+++++..|++. +.+.|+++++|
T Consensus 15 e~~~~~~~la~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskk--rgqlk~ai~~M 92 (439)
T KOG1498|consen 15 ELLPKANNLAQIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKK--RGQLKQAIQSM 92 (439)
T ss_pred HhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH--hhHHHHHHHHH
Confidence 35678889998899999999999866554 577788999999999999999999999999999998 56799999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHH-----HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCC
Q 014143 97 INNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF-----KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDG 171 (430)
Q Consensus 97 v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~-----r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~ 171 (430)
|++++.+++.+|+ .++...++++++. +++||+|+ |++-.|++++++.|+..+|++++++++++|++
T Consensus 93 vq~~~~y~~~~~d--~~~k~~li~tLr~----VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETyg--- 163 (439)
T KOG1498|consen 93 VQQAMTYIDGTPD--LETKIKLIETLRT----VTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYG--- 163 (439)
T ss_pred HHHHHHhccCCCC--chhHHHHHHHHHH----hhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhh---
Confidence 9999999999887 6678888877766 68999998 77889999999999999999999999999985
Q ss_pred CcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-ch---hHHHHHHhhhHhhhhhhcHHHHHHHHHH
Q 014143 172 TDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PR---IMGIIRECGGKMHMAERQWADAATDFFE 247 (430)
Q Consensus 172 ~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~-~~---~~~~~~~~~g~~~~~~~~y~~A~~~f~e 247 (430)
+++ .+.+++++++|+|+|+..+||.+|..+.++ ++....+ |. +.-.+|.....++.|.+.|.++|++|.+
T Consensus 164 sm~---~~ekV~fiLEQmrKOG~~~D~vra~i~skK---I~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yra 237 (439)
T KOG1498|consen 164 SME---KSEKVAFILEQMRLCLLRLDYVRAQIISKK---INKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRA 237 (439)
T ss_pred hhH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---hhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 467 488999999999999999999999998554 4444443 43 3456778888889999999999999999
Q ss_pred HHHhhhhhcch-hHHHHHHHHHHHHHhhCCCCCCCCccccccCCC---CcchHHHHHHHHHHhhCCHHHHHHHHHHhHHh
Q 014143 248 AFKNYDEAGNQ-RRIQCLKYLVLANMLMESEVNPFDGQEAKPYKN---DPEILAMTNLIAAYQRNEIIEFEKILKSNRKT 323 (430)
Q Consensus 248 a~~~~~~~~~~-~~~~~lky~~l~~lL~~~~~~~~~~~~~~~~~~---~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~ 323 (430)
++.+.....+| .|..+|.-.++..+|++ .++.++...+...+ ..++|....+++.|.++++..|...-+.|++.
T Consensus 238 iy~t~~vk~d~~kw~~vL~~iv~f~~LAp--~dneQsdll~~is~dKkL~e~p~~k~lLklfv~~EL~rw~s~~~~yg~~ 315 (439)
T KOG1498|consen 238 IYDTGNVKEDPEKWIEVLRSIVSFCVLAP--HDNEQSDLLARISNDKKLSELPDYKELLKLFVTMELIRWVSLVESYGDE 315 (439)
T ss_pred HhcccccccChhhhhhhhhhheeEEeecC--CCcHHHHHHHHHhcccccccCccHHHHHHHHHhcceeeehhHhhhhHHH
Confidence 99887766655 77888888777777773 44555555444332 34678889999999999999999888889888
Q ss_pred hcCChhH------HHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEE
Q 014143 324 IMDDPFI------RNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLE 397 (430)
Q Consensus 324 l~~D~~l------~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~ 397 (430)
+..+.++ ..||++|..+|.+||++.+.++||||++.++|+++++|+++.|.+|+.|+..|.+.|+||+|+|++.
T Consensus 316 l~~~~~~~~~~~gek~~~dL~~RIiEHNiRiiA~yYSrIt~~rl~eLLdl~~ee~E~~LS~lv~t~ti~aKidrpsgII~ 395 (439)
T KOG1498|consen 316 LRTNDFFDGGEEGEKRWSDLKLRIIEHNIRIIAKYYSRITLKRLAELLDLPVEEMEKFLSDLVVTGTIYAKIDRPSGIIN 395 (439)
T ss_pred HhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHhCCCHHHHHHHHHHHHhccceEEEecCCCceEE
Confidence 8766333 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCccchHHHHHHHHHHHHHHHHHHHhhh
Q 014143 398 RGDRSKGMKKYTAIDKWNSQLRSLYQTVSNR 428 (430)
Q Consensus 398 ~~~~~~~~~~~~~l~~w~~~v~~l~~~v~~~ 428 (430)
|..+.. +.+.|++|+.++++|+.+++..
T Consensus 396 F~k~K~---~~~~LneW~~nve~L~~ll~K~ 423 (439)
T KOG1498|consen 396 FQKVKD---SNEILNEWASNVEKLLGLLEKV 423 (439)
T ss_pred EEeccc---HHHHHHHHHhhHHHHHHHHHHH
Confidence 998765 6899999999999999998753
No 5
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-40 Score=297.43 Aligned_cols=389 Identities=12% Similarity=0.167 Sum_probs=321.8
Q ss_pred HHHhhcccCCCCHHHHHHHHHHhhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 014143 20 CSILEKGLVETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI 97 (430)
Q Consensus 20 ~~~~ak~~~~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v 97 (430)
.++.-.++.+.|.+.|++.+.....+.. +|.....+.+..|+.+|+..|+|+.+.+.+..+.+. +.++|+++.-||
T Consensus 16 ~~~~~~~l~~~d~~~~le~LL~~EkK~RqasD~~~~~kvl~~i~dLl~S~~~~~~Lneql~~L~kK--hGQlk~sI~~MI 93 (439)
T COG5071 16 LQKSLNNLNTIDIDANLEKLLIFEKKVRQASDTSTNTKVLIYIADLLFSAGDFQGLNEQLVSLFKK--HGQLKQSITSMI 93 (439)
T ss_pred HhhhhcchhhcchhhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHH--cchHHHHHHHHH
Confidence 3445567778888999999888766543 466677899999999999999999999999999987 567999999999
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHH-----HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCC
Q 014143 98 NNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF-----KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT 172 (430)
Q Consensus 98 ~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~-----r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~ 172 (430)
++++++...+.+ ..+...++++++. ++++|+|+ |++-.|.+++.++|+..+|++++++++++|+++
T Consensus 94 q~vmEylKg~~d--l~t~i~~ietlr~----VtEgkIFvEvERariT~~L~~ikee~Gdi~sA~Dilcn~pVETygs--- 164 (439)
T COG5071 94 QHVMEYLKGIDD--LKTKINLIETLRT----VTEGKIFVEVERARLTQLLSQIKEEQGDIKSAQDILCNEPVETYGS--- 164 (439)
T ss_pred HHHHHhccCccc--ccchHhHHHHHHH----HhcCceEEehhHHHHHHHHHHHHHHhcchhHHHHHHhcCchhhccc---
Confidence 999999987554 5567777777666 57889988 677799999999999999999999999999865
Q ss_pred cchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-chhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 173 DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 173 ~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
.+. +.++.++++++|++...+||.+|..+.++.++---.-++ ....-.+|..--.++++++.|.+|++|+.+.+.+
T Consensus 165 ~~~---Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kKI~KK~Fe~~d~~slKlkyYeL~V~i~Lh~R~Yl~v~~y~~~vY~t 241 (439)
T COG5071 165 FDL---SEKVAFILEQVRLFLLRSDYYMASTYTKKINKKFFEKEDVQSLKLKYYELKVRIGLHDRAYLDVCKYYRAVYDT 241 (439)
T ss_pred hhH---HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccccHHHHHHHHHHHhheeecccHHHHHHHHHHHHHHHH
Confidence 453 789999999999999999999999987776543222222 2344567777888899999999999999999998
Q ss_pred hhhhcch-hHHHHHHHHHHHHHhhCCCCCCCCccccccCCCC---cchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCC
Q 014143 252 YDEAGNQ-RRIQCLKYLVLANMLMESEVNPFDGQEAKPYKND---PEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDD 327 (430)
Q Consensus 252 ~~~~~~~-~~~~~lky~~l~~lL~~~~~~~~~~~~~~~~~~~---~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D 327 (430)
....+++ .+..+|...+...+|++ .++.+....++..++ ...+....++.+|...++..|+.+-..|.+.+.+|
T Consensus 242 ~~~~~d~Akwk~VLS~~v~F~iLtp--y~neq~dlvhKi~~d~kl~sl~~~~~lVk~f~vNelmrwp~V~~~y~~~l~~~ 319 (439)
T COG5071 242 AVVQEDPAKWKEVLSNVVCFALLTP--YDNEQADLLHKINADHKLNSLPLLQQLVKCFIVNELMRWPKVAEIYGSALRSN 319 (439)
T ss_pred HHhccCcccccchhhcceeeEEecc--cccHHHHHHHHhhhhhhhccchhhhhHHHHHHHHHHHhhhHHHHHhHHHHHhh
Confidence 8777766 77778777666667762 323333334443221 23455678999999999999999999998887766
Q ss_pred hh-H-----HHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 328 PF-I-----RNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 328 ~~-l-----~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
.| | ..||++|..++.+||++.+.++||||+..+|+..+++|+.+.|..++.|+..|-+.|+|+|++|+|.|.++
T Consensus 320 ~faF~~e~~~~~w~DL~krviEHN~RvI~~yYSrI~~~rl~~lld~~~s~te~~ISdlVN~G~~yaKiNrpa~Ii~FEK~ 399 (439)
T COG5071 320 VFAFNDEKGEKRWSDLRKRVIEHNIRVIANYYSRIHCSRLGVLLDMSPSETEQFISDLVNKGHFYAKINRPAQIISFEKS 399 (439)
T ss_pred hhhhccchhhhhHHHHHHHHHHhhHhHHHHHhhhhhHHHHHHHHcCCHHHHHHHHHHHHhcCcEEEEecCccceEEeecc
Confidence 33 2 47999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHhh
Q 014143 402 SKGMKKYTAIDKWNSQLRSLYQTVSN 427 (430)
Q Consensus 402 ~~~~~~~~~l~~w~~~v~~l~~~v~~ 427 (430)
+. ..+.|++|+.+|..|++.++.
T Consensus 400 ~n---~~~~lneW~~NV~ellgklek 422 (439)
T COG5071 400 QN---VQEQLNEWGSNVTELLGKLEK 422 (439)
T ss_pred cc---HHHHHHHhcccHHHHHHHHHH
Confidence 64 579999999999999998763
No 6
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.8e-28 Score=222.56 Aligned_cols=278 Identities=15% Similarity=0.234 Sum_probs=243.6
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014143 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (430)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~ 216 (430)
...++.|..|.+.||.+.|.+.+.+.-..+.. ...++++.+..+|+.+.-+|..-....+++|+.+...-.
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs---------~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~Gg 175 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVS---------LGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGG 175 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh---------cccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 44679999999999999999999998887542 257899999999999999999888889999988888888
Q ss_pred CchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCCC----CCCccccccCCCC
Q 014143 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVN----PFDGQEAKPYKND 292 (430)
Q Consensus 217 ~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~l~~lL~~~~~~----~~~~~~~~~~~~~ 292 (430)
|+...++++.+.|++++..+||++|+..|.++..+|.+.+-.....+.+|+++|++++-+..+ .+.+++.....
T Consensus 176 DWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g~i~leR~dlktKVi~~~Evl~vl-- 253 (393)
T KOG0687|consen 176 DWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITGLIALERVDLKTKVIKCPEVLEVL-- 253 (393)
T ss_pred ChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHhhheeccchHHhhhcCcHHHHHHh--
Confidence 998899999999999999999999999999999999888777888899999999997644332 34555444332
Q ss_pred cchHHHHHHHHHHhhCCHHHHHHHHHH-hHHhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHH
Q 014143 293 PEILAMTNLIAAYQRNEIIEFEKILKS-NRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKD 371 (430)
Q Consensus 293 ~~~~~l~~L~~af~~~dl~~f~~~l~~-~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~e 371 (430)
+.++.+.+++.++..+++..|...|.. ....+..|-++..|.+...+.+|.+++-|+.+||++++++.||+.||+|++.
T Consensus 254 ~~l~~~~q~l~SLY~C~Y~~Ff~~L~~~~~~~lk~D~~l~~h~~yyvREMR~rvY~QlLESYrsl~l~~MA~aFgVSVef 333 (393)
T KOG0687|consen 254 HKLPSVSQLLNSLYECDYSDFFNDLAAVEAKQLKDDRYLGPHYRYYVREMRRRVYAQLLESYRSLTLESMAKAFGVSVEF 333 (393)
T ss_pred hcCchHHHHHHHHHhccHHHHHHHHHHHHHHhhccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 346778889999999999999888844 4778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCceeEeeeccCCEEEEccCCccchHHHHHHH----HHHHHHHHHHHH
Q 014143 372 VEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDK----WNSQLRSLYQTV 425 (430)
Q Consensus 372 vE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~~----w~~~v~~l~~~v 425 (430)
++..|+++|.+|+++++||+++|+|+.+.|+..+..|+.+.. ..++|+++..-|
T Consensus 334 iDreL~rFI~~grL~ckIDrVnGVVEtNrpD~KN~qyq~vikqGd~LLnriQK~~rvi 391 (393)
T KOG0687|consen 334 IDRELGRFIAAGRLHCKIDRVNGVVETNRPDEKNAQYQAVIKQGDLLLNRIQKLSRVI 391 (393)
T ss_pred HHhHHHHhhccCceeeeeecccceeecCCccccchHHHHHHhhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999988888887766 667778777654
No 7
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1e-26 Score=216.06 Aligned_cols=322 Identities=17% Similarity=0.261 Sum_probs=254.8
Q ss_pred HHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014143 55 KALKQTVKLYYRL--GKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (430)
Q Consensus 55 k~l~~l~~l~~~~--~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 132 (430)
.....+.+..... ...+.+++.|..|...+++++++-...++.-.+.+.+++ + ....++.+.+.+.++...+.
T Consensus 37 QLt~~l~~fvd~~~f~~~~~~l~lY~NFvsefe~kINplslvei~l~~~~~~~D-~----~~al~~Le~i~~~~~~~~e~ 111 (380)
T KOG2908|consen 37 QLTLALVDFVDDPPFQAGDLLLQLYLNFVSEFETKINPLSLVEILLVVSEQISD-K----DEALEFLEKIIEKLKEYKEP 111 (380)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHhcc-H----HHHHHHHHHHHHHHHhhccc
Confidence 3333444444333 456789999999999999999999999999999999874 2 24556777777776664432
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
--..++....|.+++..||..++.+.|.+.++.....++.+ .....-+|..-+++|-..||+.. +|+.+....
T Consensus 112 ~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~----~~Vh~~fY~lssqYyk~~~d~a~---yYr~~L~YL 184 (380)
T KOG2908|consen 112 DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVT----SNVHSSFYSLSSQYYKKIGDFAS---YYRHALLYL 184 (380)
T ss_pred hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCC----hhhhhhHHHHHHHHHHHHHhHHH---HHHHHHHHh
Confidence 23345556888999999999999999999999887776653 25677888888888888888775 555554211
Q ss_pred ccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCCCCCCccccccCC--
Q 014143 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYK-- 290 (430)
Q Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~l~~lL~~~~~~~~~~~~~~~~~-- 290 (430)
+ +. .-+.....++.+....++++++| ++.+.+|+...+||..
T Consensus 185 ~---------~~--------------------------d~~~l~~se~~~lA~~L~~aALL-Ge~iyNfGELL~HPiles 228 (380)
T KOG2908|consen 185 G---------CS--------------------------DIDDLSESEKQDLAFDLSLAALL-GENIYNFGELLAHPILES 228 (380)
T ss_pred c---------cc--------------------------cccccCHHHHHHHHHHHHHHHHh-ccccccHHHHHhhHHHHH
Confidence 1 00 01112224555666789999998 5567779988888853
Q ss_pred -CCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhc--cc--ccccchhhHHhHh
Q 014143 291 -NDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLI--KP--YTRIRIPFISKEL 365 (430)
Q Consensus 291 -~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~--~~--Y~~I~l~~lA~~l 365 (430)
.+++.+|+.+++.||+.||+..|++.... +..-|.|++|...|.++++..+++.++ +| -+.|||+.||+.+
T Consensus 229 L~gT~~eWL~dll~Afn~Gdl~~f~~l~~~----~~~~p~L~~~e~~L~qKI~LmaLiEi~F~rpa~~R~lsf~~Ia~~t 304 (380)
T KOG2908|consen 229 LKGTNREWLKDLLIAFNSGDLKRFESLKGV----WGKQPDLASNEDFLLQKIRLLALIEITFSRPANERTLSFKEIAEAT 304 (380)
T ss_pred hcCCcHHHHHHHHHHhccCCHHHHHHHHHH----hccCchHHHHHHHHHHHHHHHHHHHHHhcCcchhccccHHHHHHHh
Confidence 24788999999999999999999987765 556899999999999999999999885 76 5999999999999
Q ss_pred CCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCC-------ccchHHHHHHHHHHHHHHHHHHHhhh
Q 014143 366 NVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS-------KGMKKYTAIDKWNSQLRSLYQTVSNR 428 (430)
Q Consensus 366 ~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~-------~~~~~~~~l~~w~~~v~~l~~~v~~~ 428 (430)
.+|.++||.+||++++.|.|+|.||+++|+|++.|.+ |+..|.+++..|+++|+++...|++|
T Consensus 305 kip~~eVE~LVMKAlslgLikG~Idqv~~~v~~swvqPRvl~~~qI~~Mk~rl~~W~~~v~~me~~ve~~ 374 (380)
T KOG2908|consen 305 KIPNKEVELLVMKALSLGLIKGSIDQVEGVVYMSWVQPRVLDRSQIVKMKDRLDEWNKDVKSMEGLVEHR 374 (380)
T ss_pred CCCHHHHHHHHHHHHhccceeeeecccccEEEEecccccccCHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999854 45578899999999999999999876
No 8
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=1.4e-26 Score=213.05 Aligned_cols=356 Identities=18% Similarity=0.252 Sum_probs=256.7
Q ss_pred HHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-CCCCChhHHHHHHHHHHHHHHHh--
Q 014143 54 FKALKQTVKLYY-RLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG-SASQNFSLLREFYQTTLKALEEA-- 129 (430)
Q Consensus 54 ~k~l~~l~~l~~-~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~-~~~~~~~~~~~~~~~~~e~l~~~-- 129 (430)
...+.++...+. ..|. ++++..+.++... ++.+-..+.-++++..+.. .+..+.+..++.++.+++.+++-
T Consensus 22 ~~qyr~~l~~~lt~~~~--el~e~~k~~id~~---~~~~vslvvsrqllsl~~~~l~~l~~e~~Kei~~~~l~~iq~rvi 96 (399)
T KOG1497|consen 22 AEQYRQLLAKVLTNNGM--ELLEALKRFIDAI---VNENVSLVVSRQLLSLFDVELSILEDELRKEISHFTLEKIQPRVI 96 (399)
T ss_pred HHHHHHHHHHHhccchH--HHHHHHHHHHHHH---HcCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcccccc
Confidence 344555443333 3332 5556655555543 4555556666666665543 22234678899999999988862
Q ss_pred hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014143 130 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (430)
Q Consensus 130 ~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~ 209 (430)
.-+.-.+.+..+||.+|+..++|..|...|..+...+-.- ..+ -..++..++.++++|+..+|...|..+.+++.
T Consensus 97 sfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~-~~d----~~~kl~l~iriarlyLe~~d~veae~~inRaS 171 (399)
T KOG1497|consen 97 SFEEQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQK-AYD----VEQKLLLCIRIARLYLEDDDKVEAEAYINRAS 171 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchh-hhh----hHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 2222233566699999999999999999999998876111 112 25788999999999999999999999999885
Q ss_pred hhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCCCCCCcc-cccc
Q 014143 210 AIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQ-EAKP 288 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~l~~lL~~~~~~~~~~~-~~~~ 288 (430)
-......+|.++-.++.|.+++....|+|.+|++.|++.-. +...+...+.++|+..+.|.+|+... |-.++ ++..
T Consensus 172 il~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~-~ki~~e~~~~~aL~~a~~CtlLA~~g--pqrsr~Latl 248 (399)
T KOG1497|consen 172 ILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ-RKIVDESERLEALKKALQCTLLASAG--PQRSRMLATL 248 (399)
T ss_pred HhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcchHHHHHHHHHhHhheeecCCC--hHHHHHHHHH
Confidence 54444467889999999999999999999999999998743 23344568889999999999998543 32232 2222
Q ss_pred CCCC--cchHHHHHH-----HHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchhhH
Q 014143 289 YKND--PEILAMTNL-----IAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFI 361 (430)
Q Consensus 289 ~~~~--~~~~~l~~L-----~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~l 361 (430)
|++. |.++++--+ -+-....++..|+..|..|+..-..|. ...+-+.+.||||+..++-|..|+|+.+
T Consensus 249 fkder~~~l~~y~ileKmyl~riI~k~el~ef~~~L~pHQka~~~dg-----ssil~ra~~EhNlls~Skly~nisf~~L 323 (399)
T KOG1497|consen 249 FKDERCQKLPAYGILEKMYLERIIRKEELQEFEAFLQPHQKAHTMDG-----SSILDRAVIEHNLLSASKLYNNISFEEL 323 (399)
T ss_pred hcCcccccccchHHHHHHHHHHHhcchhHHHHHHHhcchhhhcccCc-----chhhhhHHHHHhHHHHHHHHHhccHHHH
Confidence 3321 233433333 334467789999999988876554444 3567888999999999999999999999
Q ss_pred HhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCCccchHHHHHHHHHHHHHHHHHHHhh
Q 014143 362 SKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSLYQTVSN 427 (430)
Q Consensus 362 A~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~~w~~~v~~l~~~v~~ 427 (430)
+.+|++|++.+|+..++||..|+++|.|||.+|+|+|.+..+-.....++...|+.|+++++.+..
T Consensus 324 g~ll~i~~ekaekiaa~MI~qeRmng~IDQ~egiihFe~~e~l~~wdkqi~sl~~qvNki~~~i~~ 389 (399)
T KOG1497|consen 324 GALLKIDAEKAEKIAAQMITQERMNGSIDQIEGIIHFEDREELPQWDKQIQSLCNQVNKILDKISH 389 (399)
T ss_pred HHHhCCCHHHHHHHHHHHHhHHHhccchHhhcceEeecchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987433212234455556666666555543
No 9
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.8e-24 Score=195.87 Aligned_cols=341 Identities=15% Similarity=0.201 Sum_probs=261.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 014143 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (430)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~k 133 (430)
.|++..+-.+..+ ..+..+|+-+.+.-.++ +.+.+-|.=+..+..+-+ .+.+...++-+.+++. +. .|+.
T Consensus 42 ~ka~e~l~~~i~d----~~maplYkyL~E~~n~k-t~a~~ikfD~~~~n~l~k---kneeki~Elde~i~~~-ee-dngE 111 (412)
T COG5187 42 SKALEHLERLIID----KCMAPLYKYLAEKGNPK-TSASVIKFDRGRMNTLLK---KNEEKIEELDERIREK-EE-DNGE 111 (412)
T ss_pred hHHHHHHHHHHHH----hhhhHHHHHHHhccCCc-ccchheehhhHHHHHHHH---hhHHHHHHHHHHHHHH-hh-cccc
Confidence 4566666555544 23444555555532111 122222333344443332 1233334444444442 11 2333
Q ss_pred hHH-HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 134 LWF-KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 134 l~~-r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
... ....++|++|.+.+|.+.+.+.+.++-..-. . ...++++.++.+|+.+.-+|..-..+.++.+..+.
T Consensus 112 ~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~------s---tg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~i 182 (412)
T COG5187 112 TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAM------S---TGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDII 182 (412)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH------h---cccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 333 5677999999999999999999988876532 1 36789999999999999999998889999888887
Q ss_pred ccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCCC----CCCcccccc
Q 014143 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVN----PFDGQEAKP 288 (430)
Q Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~l~~lL~~~~~~----~~~~~~~~~ 288 (430)
..-.|+....+++.+.|+..+..++|++|+..|.++..+|...+-.....+.+|+++|.+++-+..+ .+++++...
T Consensus 183 EkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa~~~Gl~~leR~diktki~dspevl~ 262 (412)
T COG5187 183 EKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISYSRAVRYAIFCGLLRLERRDIKTKILDSPEVLD 262 (412)
T ss_pred HhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccHHHHHHHHHHhhhheeehhhhhhhhcCCHHHHH
Confidence 7778888899999999999999999999999999999999888877888899999999998754332 467775544
Q ss_pred CCC-CcchHHHHHHHHHHhhCCHH-HHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhC
Q 014143 289 YKN-DPEILAMTNLIAAYQRNEII-EFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELN 366 (430)
Q Consensus 289 ~~~-~~~~~~l~~L~~af~~~dl~-~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~ 366 (430)
... ...+..+..+..+...+|+. -|...+.-+.+.+..|.|+..|.+.+.+.+|.+++.++.++|+.++++.||+.||
T Consensus 263 vi~~~e~l~sl~~l~~SLy~cdY~~~F~~ll~~~~n~L~~d~fl~rh~d~fvREMRrrvYaQlLESYr~lsl~sMA~tFg 342 (412)
T COG5187 263 VIGSSEKLGSLVQLATSLYECDYGGDFMNLLYLFCNSLQDDVFLGRHVDLFVREMRRRVYAQLLESYRLLSLESMAQTFG 342 (412)
T ss_pred hccchhhhhhHHHHHHHHHHhccchhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC
Confidence 331 22345566788888999999 5677888888999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCCccchHHHHHHH
Q 014143 367 VPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDK 413 (430)
Q Consensus 367 l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~~ 413 (430)
++++-++.-|.+.|-+|++++.||+++|+|..+.|+..+.-|..+..
T Consensus 343 VSV~yvdrDLg~FIp~~~LncvIDRvnGvVetnrpdekn~qy~~vVk 389 (412)
T COG5187 343 VSVEYVDRDLGEFIPEGRLNCVIDRVNGVVETNRPDEKNQQYSSVVK 389 (412)
T ss_pred ccHHHHhhhHHhhCCCCceeeeeecccceEeccCcchhhhhHHHHHh
Confidence 99999999999999999999999999999999999876666665554
No 10
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=2e-24 Score=205.11 Aligned_cols=268 Identities=16% Similarity=0.245 Sum_probs=222.3
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc--
Q 014143 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA-- 214 (430)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~-- 214 (430)
+....|+.+|.+.|+++.|.+.+..++.+|+.. ...+.+++.-+++....+||...-.+..+|......
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~---------khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSA---------KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch---------HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence 345589999999999999999999999999842 567899999999999999999988888888654211
Q ss_pred CCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHH-HHhhh--hhcchhHHHHHHHHHHHHHhhCCC----CCCCCccccc
Q 014143 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEA-FKNYD--EAGNQRRIQCLKYLVLANMLMESE----VNPFDGQEAK 287 (430)
Q Consensus 215 ~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea-~~~~~--~~~~~~~~~~lky~~l~~lL~~~~----~~~~~~~~~~ 287 (430)
...+.+.+.++...|..++..++|+.|.++|..+ +..++ ..-.| .++..|..||++-+.+. .+..++..+.
T Consensus 222 ~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtp--sdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk 299 (466)
T KOG0686|consen 222 NLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTP--SDVAIYGGLCALATFDRQDLKLNVIKNESFK 299 (466)
T ss_pred hHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecc--hhhHHHHhhHhhccCCHHHHHHHHHcchhhh
Confidence 0113444568889999999999999999999998 33333 33333 45677999999854321 1223444455
Q ss_pred cCCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCC
Q 014143 288 PYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNV 367 (430)
Q Consensus 288 ~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l 367 (430)
.+. .-.|.+..++..|.++.+..+.+.|.+.++.+.-|++++.|++.|+..||.++++++..||+++.++.||..++.
T Consensus 300 ~fl--el~Pqlr~il~~fy~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR~r~llqy~~py~s~~m~~mA~af~~ 377 (466)
T KOG0686|consen 300 LFL--ELEPQLREILFKFYSSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIRNRALLQYLSPYSSADMSKMAEAFNT 377 (466)
T ss_pred hHH--hcChHHHHHHHHHhhhhHHHHHHHHHHhccceeechhcchhHHHHHHHHHHhhHHHhcCccccchHHHHHHHhcc
Confidence 554 234568899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCCccchHHHHHHHHHHH
Q 014143 368 PEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQ 417 (430)
Q Consensus 368 ~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~~w~~~ 417 (430)
++...|+.|.++|.+|+|+|+||+.+++|.+.+.+++++.+++..-.+..
T Consensus 378 sv~~le~~l~~LI~~~~i~~rIDs~~ki~~~~~~~~en~~fe~~~~~~~~ 427 (466)
T KOG0686|consen 378 SVAILESELLELILEGKISGRIDSHNKILYARDADSENATFERVLPMGKR 427 (466)
T ss_pred cHHHHHHHHHHHHHccchheeeccccceeeecccccccchhhhcchhhHH
Confidence 99999999999999999999999999999999998888888777666554
No 11
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=99.80 E-value=5.2e-19 Score=143.97 Aligned_cols=105 Identities=33% Similarity=0.626 Sum_probs=98.5
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHH
Q 014143 296 LAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQL 375 (430)
Q Consensus 296 ~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~ 375 (430)
||+..|+++|.++|+..|.+.++.+...+..|+++..|++.+.++++.+++.+++++|++|++++||+.++++.++||.+
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~~~l~~l~~~y~~i~~~~ia~~l~~~~~~vE~~ 80 (105)
T PF01399_consen 1 PPYSELLRAFRSGDLQEFEEFLEKHSESLFKDPFLAEYVEQLKEKIRRRNLRQLSKPYSSISISEIAKALQLSEEEVESI 80 (105)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHTCHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHC-SEEEHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhccchHHHHHH
Confidence 57899999999999999999999997778889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCceeEeeeccCCEEEEcc
Q 014143 376 LVSLILDNRIDGHIDQVNRLLERGD 400 (430)
Q Consensus 376 l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (430)
+++||.+|.|+|+|||++|+|+|.+
T Consensus 81 l~~~I~~~~i~~~ID~~~~~v~~~k 105 (105)
T PF01399_consen 81 LIDLISNGLIKAKIDQVNGVVVFSK 105 (105)
T ss_dssp HHHHHHTTSSEEEEETTTTEEEE-S
T ss_pred HHHHHHCCCEEEEEECCCCEEEecC
Confidence 9999999999999999999999974
No 12
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=1.7e-17 Score=153.48 Aligned_cols=275 Identities=19% Similarity=0.230 Sum_probs=202.1
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHH---HHHhhcCHHHHHHHHHHHHhhhc
Q 014143 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ---MYTETKNNKKLKQLYQKALAIKS 213 (430)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~---l~~~~~d~~ka~~~l~~a~~~~~ 213 (430)
.+..++|++.+++|+|..|..+|.-.+..+..+ |+...+.++.-++.++- +-.++.|..+.|++++...
T Consensus 130 ~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~----d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~IDs~~---- 201 (432)
T KOG2758|consen 130 ETLYKYAKFQYECGNYSGASDYLYFYRALVSDP----DRNYLSALWGKLASEILTQNWDGALEDLTRLREYIDSKS---- 201 (432)
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHhcCCc----chhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcccc----
Confidence 456799999999999999999999999998765 32113455666666553 3445556666666554321
Q ss_pred cCCC--chhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH---hhhhhcchhHHHHHHHHHHHHHhhCCCC-CC------C
Q 014143 214 AIPH--PRIMGIIRECGGKMHMAERQWADAATDFFEAFK---NYDEAGNQRRIQCLKYLVLANMLMESEV-NP------F 281 (430)
Q Consensus 214 ~~~~--~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~---~~~~~~~~~~~~~lky~~l~~lL~~~~~-~~------~ 281 (430)
..+ ..++.+.|+..+-++.. -++..++....+.|- -|-++....+++.++|+..+.+...+.. +. .
T Consensus 202 -f~~~~~~l~qRtWLiHWslfv~-fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLatAvvtnk~~rr~~lkdlvkV 279 (432)
T KOG2758|consen 202 -FSTSAQQLQQRTWLIHWSLFVF-FNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLATAVVTNKRRRRNRLKDLVKV 279 (432)
T ss_pred -cccHHHHHHHHHHHHHHHHHhh-ccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHHHHhhcchHhhHHHHHHHHHH
Confidence 112 23556667655554321 234455666666653 2445666778899999999888652221 11 2
Q ss_pred CccccccCCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchhhH
Q 014143 282 DGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFI 361 (430)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~l 361 (430)
-+++...|+ ||..+++..| |.+.|+...+..+.+++..+.+|+|+....+++.+..|....--+.+..++|+++-+
T Consensus 280 IqqE~ysYk-DPiteFl~cl---yvn~DFdgAq~kl~eCeeVl~nDfFLva~l~~F~E~ARl~ifEtfCRIHqcIti~mL 355 (432)
T KOG2758|consen 280 IQQESYSYK-DPITEFLECL---YVNYDFDGAQKKLRECEEVLVNDFFLVALLDEFLENARLLIFETFCRIHQCITIDML 355 (432)
T ss_pred HHHhccccC-CcHHHHHHHH---hhccchHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHheeHHHH
Confidence 355666787 6888776554 789999999999999999999999999999999999987777777778899999999
Q ss_pred HhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCCccchHHHHHHHHHHHH----HHHHHHHhh
Q 014143 362 SKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQL----RSLYQTVSN 427 (430)
Q Consensus 362 A~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~~w~~~v----~~l~~~v~~ 427 (430)
|..|+++++++|.|++++|.+.+|+|+||...|.|++..++. ..++++.+-++++ +.|.+.++.
T Consensus 356 A~kLnm~~eeaErwivnlIr~~rl~AkidSklg~Vvmg~~~~--s~~qQ~ie~tksLS~rsq~la~~lek 423 (432)
T KOG2758|consen 356 ADKLNMDPEEAERWIVNLIRTARLDAKIDSKLGHVVMGHPTV--SPHQQLIEKTKSLSFRSQNLAQQLEK 423 (432)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhhhhhhccccCceeecCCCC--CHHHHHHHhccccchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999987765 3677776644443 455555543
No 13
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=9.7e-16 Score=146.08 Aligned_cols=220 Identities=18% Similarity=0.262 Sum_probs=164.9
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCC---chhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhh-hhcchhHHHHH
Q 014143 189 IQMYTETKNNKKLKQLYQKALAIKSAIPH---PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD-EAGNQRRIQCL 264 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~-~~~~~~~~~~l 264 (430)
.|.|+.-+-|.+|..+..++. .|+ ....+++..+.|++.+-+.||.+|.++|..|...-. ...-....++-
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~-----~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~ 290 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSV-----YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVN 290 (493)
T ss_pred HHHHhhhHHHHHHHHHhhccc-----CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHH
Confidence 366777666666655543221 222 345788989999999999999999999999986543 33334667788
Q ss_pred HHHHHHHHhhCCCCC--CCCccccccCCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHH
Q 014143 265 KYLVLANMLMESEVN--PFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVR 342 (430)
Q Consensus 265 ky~~l~~lL~~~~~~--~~~~~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~ 342 (430)
+.+++..+|.++-.+ .|..+..+ ..+.++..|.+|...+|+.+|.+.+++|.+.|..|.... -+-.|+.+|+
T Consensus 291 k~~ivv~ll~geiPers~F~Qp~~~-----ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~-LivRLR~NVI 364 (493)
T KOG2581|consen 291 KLMIVVELLLGEIPERSVFRQPGMR-----KSLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYT-LIVRLRHNVI 364 (493)
T ss_pred HHHHHHHHHcCCCcchhhhcCccHH-----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcch-HHHHHHHHHH
Confidence 899999998875321 23222111 245677889999999999999999999999999987543 3456888888
Q ss_pred HHHHHHhcccccccchhhHHhHhCCCh-HHHHHHHHHhhhcCceeEeeeccCCEEEEcc------CCccchHHHHHHHHH
Q 014143 343 TQVLLKLIKPYTRIRIPFISKELNVPE-KDVEQLLVSLILDNRIDGHIDQVNRLLERGD------RSKGMKKYTAIDKWN 415 (430)
Q Consensus 343 ~~~l~~i~~~Y~~I~l~~lA~~l~l~~-~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~------~~~~~~~~~~l~~w~ 415 (430)
.-+|+.|.-.||||++.+||+.|+++. +++|.+++++|.+|.|+|+||+.+|++...+ +..+...++.=...|
T Consensus 365 kTgIR~ISlsYSRISl~DIA~kL~l~Seed~EyiVakAIRDGvIea~Id~~~g~m~skE~~diy~t~epQ~~f~~rI~fC 444 (493)
T KOG2581|consen 365 KTGIRKISLSYSRISLQDIAKKLGLNSEEDAEYIVAKAIRDGVIEAKIDHEDGFMQSKETFDIYSTREPQTAFDERIRFC 444 (493)
T ss_pred HHhhhheeeeeeeccHHHHHHHhcCCCchhHHHHHHHHHHhccceeeeccccCceehhhhhhhhccCCchhhHhHHHHHH
Confidence 899999999999999999999999965 5599999999999999999999999887653 222223444444455
Q ss_pred HHHH
Q 014143 416 SQLR 419 (430)
Q Consensus 416 ~~v~ 419 (430)
-++.
T Consensus 445 l~Lh 448 (493)
T KOG2581|consen 445 LQLH 448 (493)
T ss_pred HHHH
Confidence 5543
No 14
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15. Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.
Probab=99.56 E-value=1.6e-14 Score=113.69 Aligned_cols=72 Identities=32% Similarity=0.493 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCCcc
Q 014143 333 YIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKG 404 (430)
Q Consensus 333 ~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~ 404 (430)
|+..+.++++++++.+++++|++|++++||+.+++|.+++|.+|++||.+|.|+|+|||.+|+|+|.+.+++
T Consensus 2 ~~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r 73 (88)
T smart00088 2 LVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPR 73 (88)
T ss_pred hHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchh
Confidence 678899999999999999999999999999999999999999999999999999999999999999988765
No 15
>smart00753 PAM PCI/PINT associated module.
Probab=99.56 E-value=1.6e-14 Score=113.69 Aligned_cols=72 Identities=32% Similarity=0.493 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCCcc
Q 014143 333 YIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKG 404 (430)
Q Consensus 333 ~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~ 404 (430)
|+..+.++++++++.+++++|++|++++||+.+++|.+++|.+|++||.+|.|+|+|||.+|+|+|.+.+++
T Consensus 2 ~~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r 73 (88)
T smart00753 2 LVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPR 73 (88)
T ss_pred hHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchh
Confidence 678899999999999999999999999999999999999999999999999999999999999999988765
No 16
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.52 E-value=3.5e-12 Score=120.54 Aligned_cols=296 Identities=15% Similarity=0.190 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHhhhhhh------HHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHH
Q 014143 117 EFYQTTLKALEEAKNERL------WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ 190 (430)
Q Consensus 117 ~~~~~~~e~l~~~~~~kl------~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~ 190 (430)
..++.....++.++.+-+ ++.+...++....+.++..--..++.......... ...+.-++.....
T Consensus 77 ~li~~~~~FV~~~n~eqlr~as~~f~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~--------~~qlT~~H~~l~~ 148 (422)
T KOG2582|consen 77 TLIELLNDFVDENNGEQLRLASEIFFPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPS--------NGQLTSIHADLLQ 148 (422)
T ss_pred HHHHHHHHHHHhcChHHHhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhccC--------ccchhhhHHHHHH
Confidence 444555555555544443 22444566666665444333233333333222211 1245566666677
Q ss_pred HHHhhcCHHHHHHHHHHHH-hh--hccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcchhHHHHH-HH
Q 014143 191 MYTETKNNKKLKQLYQKAL-AI--KSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL-KY 266 (430)
Q Consensus 191 l~~~~~d~~ka~~~l~~a~-~~--~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l-ky 266 (430)
+++..+++.-.-.+++.-. .+ .+.-.+|++.-.+..++|.++...++|..|.-.|+.+...+...-+....++. +|
T Consensus 149 ~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~Pa~~vs~~hlEaYkky 228 (422)
T KOG2582|consen 149 LCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTTPAMAVSHIHLEAYKKY 228 (422)
T ss_pred HHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 7888888765544443211 11 13334577777777899999999999999997777776655443333344444 57
Q ss_pred HHHHHHhhCCCC--CCCCccccccCCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHH
Q 014143 267 LVLANMLMESEV--NPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQ 344 (430)
Q Consensus 267 ~~l~~lL~~~~~--~~~~~~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~ 344 (430)
++++-|+.|+.. +--.++.+.++.+ |-.+++.++.++|.++.-.+...+..++.+.|..|.... .+......+-.|
T Consensus 229 lLvsLI~~GK~~ql~k~ts~~~~r~~K-~ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~-l~k~av~sl~k~ 306 (422)
T KOG2582|consen 229 LLVSLILTGKVFQLPKNTSQNAGRFFK-PMSNPYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTG-LAKQAVSSLYKK 306 (422)
T ss_pred HHHHhhhcCceeeccccchhhhHHhcc-cCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHH-HHHHHHHHHHHH
Confidence 777777776532 2233455555543 556678899999999999999999999999999997643 245556677789
Q ss_pred HHHHhcccccccchhhHHhHhCC-ChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCC---ccchHHHHHHHHHHHHHH
Q 014143 345 VLLKLIKPYTRIRIPFISKELNV-PEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS---KGMKKYTAIDKWNSQLRS 420 (430)
Q Consensus 345 ~l~~i~~~Y~~I~l~~lA~~l~l-~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~---~~~~~~~~l~~w~~~v~~ 420 (430)
||.++.+.|+++++++||++.++ +.+|||+.|.+||.+|.|.+.|| |.|.|.+.+ ...+|...=.+.|-.+.+
T Consensus 307 nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~~i~a~iN---G~v~f~~n~e~~~SpeM~~nk~~~~~~L~e 383 (422)
T KOG2582|consen 307 NIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDGEIFASIN---GMVFFTDNPEKYNSPEMHENKIDLCIQLIE 383 (422)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccCceEEEec---ceEEEecCcccCCCHHHHhhHHHHHHHHHH
Confidence 99999999999999999998888 57899999999999999999999 999998643 222444432334444444
Q ss_pred HHHHH
Q 014143 421 LYQTV 425 (430)
Q Consensus 421 l~~~v 425 (430)
.+..+
T Consensus 384 ~l~~~ 388 (422)
T KOG2582|consen 384 ALKAM 388 (422)
T ss_pred HHHhc
Confidence 44333
No 17
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=99.26 E-value=2.8e-10 Score=101.28 Aligned_cols=128 Identities=12% Similarity=0.136 Sum_probs=114.2
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014143 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (430)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~ 217 (430)
....+|++|.+.||+++|.+.+.+.+..|..+ ..++++++..+++++..+|+..+..++.++........+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~---------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d 108 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSP---------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGD 108 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH---------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccch
Confidence 35699999999999999999999999998742 568999999999999999999999999999988877777
Q ss_pred chhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhh---hcchhHHHHHHHHHHHHHhh
Q 014143 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE---AGNQRRIQCLKYLVLANMLM 274 (430)
Q Consensus 218 ~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~---~~~~~~~~~lky~~l~~lL~ 274 (430)
+...++++.+.|+.++..|+|..|+..|.++..+|.. .+-....++..|.+||++++
T Consensus 109 ~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~~~~~el~s~~d~a~Y~~l~aLat 168 (177)
T PF10602_consen 109 WERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFTSLQYTELISYNDFAIYGGLCALAT 168 (177)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCCCCchhhhcCHHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999999887754 33346678899999999976
No 18
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=99.15 E-value=1.7e-08 Score=94.67 Aligned_cols=183 Identities=17% Similarity=0.254 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCCCCCCccccccCCCCcchHHHHHHHHHHhhCCHHHHHHHHHH
Q 014143 240 DAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKS 319 (430)
Q Consensus 240 ~A~~~f~ea~~~~~~~~~~~~~~~lky~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~ 319 (430)
.+.+-|-+-..+|.+.....+..-..-.+.-++-+++ +-.|+..+.++-..--+-+.+..|+..|.++-+..|-+..+.
T Consensus 183 ~s~kvmt~lLgtyt~dnas~AredA~rcV~~av~dP~-~F~fD~Ll~L~pV~qLE~d~i~qLL~IF~s~~L~aYveF~~~ 261 (378)
T KOG2753|consen 183 ESSKVMTELLGTYTEDNASEAREDAMRCVVEAVKDPK-IFLFDHLLTLPPVKQLEGDLIHQLLKIFVSGKLDAYVEFVAA 261 (378)
T ss_pred hHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHcCCc-eeccchhccCchHHHhccchHHHHHHHHHhcchHHHHHHHHh
Confidence 3444455555566544433444444444555543322 223444433331000011237789999999999999888887
Q ss_pred hHHhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 320 NRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 320 ~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
+...+...++.+ +....+||..-++.+..+-..|+++.|++.|++..+|||.++.+.|.-|.+.|+|||.+.+|++.
T Consensus 262 N~~Fvqs~gl~~---E~~~~KMRLLTlm~LA~es~eisy~~l~k~LqI~edeVE~fVIdaI~aklV~~kidq~~~~viVs 338 (378)
T KOG2753|consen 262 NSGFVQSQGLVH---EQNMAKMRLLTLMSLAEESNEISYDTLAKELQINEDEVELFVIDAIRAKLVEGKIDQMNRTVIVS 338 (378)
T ss_pred ChHHHHHhcccH---HHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhHHhhcceEEee
Confidence 766555554443 37788999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC-------CccchHHHHHHHHH----HHHHHHHHHHh
Q 014143 400 DR-------SKGMKKYTAIDKWN----SQLRSLYQTVS 426 (430)
Q Consensus 400 ~~-------~~~~~~~~~l~~w~----~~v~~l~~~v~ 426 (430)
.. .|-...++.|..|. +.|+..+..++
T Consensus 339 ~~~hR~FG~~qW~~L~~kL~aw~k~~~stv~~~l~~~e 376 (378)
T KOG2753|consen 339 SSTHRTFGKQQWQQLRDKLAAWGKQNLSTVRENLQSEE 376 (378)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHhhhhHHHHHHhhhcc
Confidence 53 23335678999996 45555544443
No 19
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=98.95 E-value=2.2e-07 Score=88.87 Aligned_cols=243 Identities=17% Similarity=0.229 Sum_probs=156.4
Q ss_pred ccHHHHHHHHHHHHhhccCCCCC-cchhhcchHHHHH---HHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-chh----
Q 014143 150 GEYGRMSKILKELHKSCQREDGT-DDQKKGSQLLEVY---AIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRI---- 220 (430)
Q Consensus 150 g~~~~A~~~l~el~~~~~~~~~~-~d~~~~~~~~e~~---l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~-~~~---- 220 (430)
....++.+++...-..|-..-+. ..+ +-++..| -..-.+|+++++..-++..++.... . ..+| +..
T Consensus 144 d~l~~~sr~l~R~Fn~il~dR~p~ln~---skk~g~y~iaNlL~~iY~Rl~~~~l~~n~lka~~~-v-s~~Di~~~~~sq 218 (413)
T COG5600 144 DNLSKISRLLTRMFNSILNDRSPALNP---SKKVGLYYIANLLFQIYLRLGRFKLCENFLKASKE-V-SMPDISEYQKSQ 218 (413)
T ss_pred hhHHHHHHHHHHHHHHhcCCcCccCCh---hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHhccc-c-cccccchhhhcc
Confidence 45667788888888777543221 111 2223322 2344689999999988887765432 1 1122 211
Q ss_pred HHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCCCCCCccccccCCCCcchHHHHH
Q 014143 221 MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTN 300 (430)
Q Consensus 221 ~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~l~~ 300 (430)
+-.+..+-|+++++..++.+|+-+|-+||.............++-|++..++|.+... |... ...++ +....+.-
T Consensus 219 ~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~l~~~n~~rIl~~~ipt~Llv~~~~-Ptk~-~L~r~---~~~s~~~~ 293 (413)
T COG5600 219 VVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPWLITRNRKRILPYYIPTSLLVNKFP-PTKD-LLERF---KRCSVYSP 293 (413)
T ss_pred eeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChhhhhcchheehhHHhhHHHHhCCCC-CchH-HHHhc---cccchhHH
Confidence 2345678899999999999999999999976544333345567788888888765432 2111 11222 22455667
Q ss_pred HHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHH-hc---ccccc--cchhhHHhHhCC-C----h
Q 014143 301 LIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLK-LI---KPYTR--IRIPFISKELNV-P----E 369 (430)
Q Consensus 301 L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~-i~---~~Y~~--I~l~~lA~~l~l-~----~ 369 (430)
|+++...|++..|...+++++..|.+-... --+...++-+.-+|+.+ .. ---++ +++-.++..+.. + .
T Consensus 294 LvkavrsGni~~~~~~l~~ner~~~~~~l~-ltl~~~~~~V~~RNL~rk~w~~~~~qsrlp~sil~~~~qls~~dn~~~~ 372 (413)
T COG5600 294 LVKAVRSGNIEDFDLALSRNERKFAKRGLY-LTLLAHYPLVCFRNLFRKIWRLHGKQSRLPLSILLIVLQLSAIDNFHSF 372 (413)
T ss_pred HHHHHHcCCHHHHHHHHHHhHHHHHHcchH-HHHHhhccHHHHHHHHHHHHhhccccccCcHHHHHHHHHccCCCcccCh
Confidence 899999999999999999988655444322 11222233344444443 11 11245 444555555543 2 6
Q ss_pred HHHHHHHHHhhhcCceeEeeeccCCEEEEccCCc
Q 014143 370 KDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSK 403 (430)
Q Consensus 370 ~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~ 403 (430)
++||-.++.||..|.+.|.|-+...+|+|.++++
T Consensus 373 ~~VEciL~tlI~~G~lrgYis~s~~~vV~sk~~p 406 (413)
T COG5600 373 KEVECILVTLIGLGLLRGYISHSRRTVVFSKKDP 406 (413)
T ss_pred HHHHHHHHHHHhhhhhhheecccceEEEEecCCC
Confidence 8999999999999999999999999999997764
No 20
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=2.4e-06 Score=87.47 Aligned_cols=228 Identities=14% Similarity=0.141 Sum_probs=142.9
Q ss_pred hhcCHHHHHHHHHHHHhhhccCC--CchhHH---HHHHhhhHhhhhhhcHHHHHHHHHHHHHhh---------------h
Q 014143 194 ETKNNKKLKQLYQKALAIKSAIP--HPRIMG---IIRECGGKMHMAERQWADAATDFFEAFKNY---------------D 253 (430)
Q Consensus 194 ~~~d~~ka~~~l~~a~~~~~~~~--~~~~~~---~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~---------------~ 253 (430)
-.+||.+||.++-.+-- ...|. ||..|. +.-...|+..+..|-..+|..++.+...+= .
T Consensus 498 L~d~f~~ARDlLLMSHl-QdnI~h~D~stQIL~NRtmvQLGLCAFR~Gmi~EaH~~L~dl~st~r~kELLgQgv~~~~~h 576 (843)
T KOG1076|consen 498 LHDNFYTARDLLLMSHL-QDNIQHADISTQILFNRTMVQLGLCAFRQGMIKEAHQCLSDLQSTGRVKELLGQGVLQRRQH 576 (843)
T ss_pred HHHhHHHHHHHHHHHHH-HHHhhccChhHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcchHHHHHhhhhhhhhhh
Confidence 34678888888766521 12222 444442 334566777788899999999998885331 1
Q ss_pred h----hcchh-HH----------HHH-HHHHHHHHhhCCC----------C----CCCCcc----ccccCCCCcc-h-HH
Q 014143 254 E----AGNQR-RI----------QCL-KYLVLANMLMESE----------V----NPFDGQ----EAKPYKNDPE-I-LA 297 (430)
Q Consensus 254 ~----~~~~~-~~----------~~l-ky~~l~~lL~~~~----------~----~~~~~~----~~~~~~~~~~-~-~~ 297 (430)
+ .+-.+ +. ..| ...+.|++|..=+ . .+|..+ +-+.+.+-|+ + +-
T Consensus 577 e~t~eQe~~eR~rQlPyHmHINLELlEcVyLtcaMLlEIP~MAA~~~d~Rrr~iSk~frr~Le~serqsf~gPPEn~Reh 656 (843)
T KOG1076|consen 577 EKTAEQEKIERRRQLPYHMHINLELLECVYLTCAMLLEIPYMAAHESDARRRMISKSFRRQLEHSERQSFTGPPENTREH 656 (843)
T ss_pred ccChhhHHHHHhhcCchhhhccHHHHHHHHHHHHHHHhhhHHhhhhhhhhcccccHHHHHHHHHHhhccccCCchhHHHH
Confidence 0 00000 10 111 1344677764200 0 112211 1222333232 1 12
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhc----ccccccchhhHHhHhCCChHHHH
Q 014143 298 MTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLI----KPYTRIRIPFISKELNVPEKDVE 373 (430)
Q Consensus 298 l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~----~~Y~~I~l~~lA~~l~l~~~evE 373 (430)
+..-.+|...||..++.+.+-...+.|..=|.--.=.+-|.++|.+-.|+-|+ ..|.+||++.||++|++|+..|-
T Consensus 657 VvaAsKAm~~Gnw~~c~~fi~nn~KvW~Lfpn~d~V~~Ml~~rIqEEsLRTYLftYss~Y~SvSl~~LA~mFdLp~~~Vh 736 (843)
T KOG1076|consen 657 VVAASKAMQKGNWQKCFEFIVNNIKVWDLFPNADTVLDMLTERIQEESLRTYLFTYSSVYDSVSLAKLADMFDLPEPKVH 736 (843)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHhCCCchhHH
Confidence 33457788999999999855444444432222223346788888888888775 45789999999999999999999
Q ss_pred HHHHHhhhcCceeEeeeccCCEEEEccCCccchHHHHHHHHHHHHHHHHH
Q 014143 374 QLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSLYQ 423 (430)
Q Consensus 374 ~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~~w~~~v~~l~~ 423 (430)
..|++||.+..|.|++|||.+||+|.+. +++.........++++..|..
T Consensus 737 sIiSkmiineEl~AslDqpt~~iv~hrv-E~srlq~La~qL~eKl~~L~E 785 (843)
T KOG1076|consen 737 SIISKMIINEELHASLDQPTQCIVMHRV-EPSRLQSLAVQLSEKLAILAE 785 (843)
T ss_pred HHHHHHHHHHHhhhccCCCcceEEEeec-cchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999984 344455555556666655543
No 21
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.82 E-value=1.5e-06 Score=83.56 Aligned_cols=237 Identities=11% Similarity=0.126 Sum_probs=146.3
Q ss_pred hhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhh
Q 014143 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 130 (430)
Q Consensus 51 ~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~ 130 (430)
+.....+.+.+..|...|+|+++.+.|.+.........++...++........+.+. +.+.....++.+.+.....+
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~---~~~~Ai~~~~~A~~~y~~~G 108 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG---DPDEAIECYEKAIEIYREAG 108 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHhcC
Confidence 345677888888888999999999998888887644455666777777777766653 24455666666666555444
Q ss_pred hhhhHHHHhHHHHHHHHHh-ccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014143 131 NERLWFKTNLKLCKIWFDM-GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (430)
Q Consensus 131 ~~kl~~r~~~~La~~~~~~-g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~ 209 (430)
+-....++..++|.+|.+. |++++|.+.+++........+ . .....+++...+.++...++|.+|...|.+..
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~---~---~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG---S---PHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---C---hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4445557888999999998 999999999988888765421 1 24456777777888888888888888887653
Q ss_pred hhhccCCCchhHH-HHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCCCCCCcccccc
Q 014143 210 AIKSAIPHPRIMG-IIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKP 288 (430)
Q Consensus 210 ~~~~~~~~~~~~~-~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~l~~lL~~~~~~~~~~~~~~~ 288 (430)
.......-.+... .+.+..+++++..+|+..|...|-. ... .+| .
T Consensus 183 ~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~------------------------~~~---~~~-------~ 228 (282)
T PF14938_consen 183 KKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALER------------------------YCS---QDP-------S 228 (282)
T ss_dssp HTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHH------------------------HGT---TST-------T
T ss_pred HHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH------------------------HHh---hCC-------C
Confidence 3211000011111 2233344445444443333221111 000 111 1
Q ss_pred CCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhH
Q 014143 289 YKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFI 330 (430)
Q Consensus 289 ~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l 330 (430)
|...++...+..|+.||.++|...|...+..|...-..|+..
T Consensus 229 F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~ 270 (282)
T PF14938_consen 229 FASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWK 270 (282)
T ss_dssp STTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHH
T ss_pred CCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHH
Confidence 333467778899999999999999999999998877778764
No 22
>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=5.4e-07 Score=88.06 Aligned_cols=239 Identities=18% Similarity=0.217 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHhhccCCCCC-cchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchh--HHHHHHhh
Q 014143 152 YGRMSKILKELHKSCQREDGT-DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI--MGIIRECG 228 (430)
Q Consensus 152 ~~~A~~~l~el~~~~~~~~~~-~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~--~~~~~~~~ 228 (430)
.+.|.+.+...-..|-..... ...+++.....+--..-++|+..+...-++...+......+.+.+... +-.+..+-
T Consensus 132 le~~s~~i~~~f~~cl~d~~~~~~~~kk~~~~~i~n~lf~Iyfri~~~~L~k~l~ra~~~~~~~~~~~~l~~~v~y~Yyl 211 (394)
T KOG2688|consen 132 LEAASRTISRLFSSCLSDRRADLEESKKVAMLYIVNQLFQIYFRIEKLLLCKNLIRAFDQSGSDISDFPLAQLVVYHYYL 211 (394)
T ss_pred HHHHHHHHHHHHHHHhCccccccccchhhHHHHHHHHHHHHHHHHhhHHHhHHHHHHhhccccchhhcccccceeeeeee
Confidence 344555555555544322111 111122333344444557899998888888876655432111111111 11234456
Q ss_pred hHhhhhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCC-CCCCCCccccccCCCCcchHHHHHHHHHHhh
Q 014143 229 GKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMES-EVNPFDGQEAKPYKNDPEILAMTNLIAAYQR 307 (430)
Q Consensus 229 g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~l~~lL~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~~af~~ 307 (430)
|++++.+.||.+|..++-++|......-......++.|++-+.++.+. +..++ ...| ....+..|+++...
T Consensus 212 Gr~a~~~~d~~~A~~~L~~af~~cp~~~~~n~~~iliylip~~~llg~~Pt~~l----L~~~----~~~~~~~lv~aVr~ 283 (394)
T KOG2688|consen 212 GRYAMFESDFLNAFLQLNEAFRLCPDLLLKNKRLILIYLIPTGLLLGRIPTKEL----LDFY----TLDKYSPLVQAVRS 283 (394)
T ss_pred eeehhhhhhHHHHHHHHHHHHHhCcHHHHhhhhhHHHHHhHHHHHhccCcchhh----HhHh----hHHhHHHHHHHHHh
Confidence 899999999999999999999865432223445678999999987654 11111 1112 14556789999999
Q ss_pred CCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhc----ccc---cccchhhHHhHhCC------ChHHHHH
Q 014143 308 NEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLI----KPY---TRIRIPFISKELNV------PEKDVEQ 374 (430)
Q Consensus 308 ~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~----~~Y---~~I~l~~lA~~l~l------~~~evE~ 374 (430)
|++..|...++.++..|..-..+ .....++.+.++.++ .-- ++++++.+-..+.. +.+++|-
T Consensus 284 Gnl~~f~~al~~~E~~f~~~gi~-----l~l~~l~lv~yrnL~kkv~~~~~~~~~lpls~~~~al~~~~~~~~~~devec 358 (394)
T KOG2688|consen 284 GNLRLFDLALADNERFFIRSGIY-----LTLEKLPLVVYRNLFKKVIQLWGKTSQLPLSRFLTALQFSGVTDVDLDEVEC 358 (394)
T ss_pred ccHHHHHHHHhhhHHHHHHhccH-----HHhhhhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhcCCCCCchhhHHH
Confidence 99999999999988655443332 112223333333333 222 78888888777654 3689999
Q ss_pred HHHHhhhcCceeEeeeccCCEEEEccCCc
Q 014143 375 LLVSLILDNRIDGHIDQVNRLLERGDRSK 403 (430)
Q Consensus 375 ~l~~lI~~g~i~g~IDq~~g~v~~~~~~~ 403 (430)
.++.+|..|+|+|.|++....+++.+.++
T Consensus 359 iLa~lI~~G~ikgYish~~~~~V~sK~~p 387 (394)
T KOG2688|consen 359 ILANLIDLGRIKGYISHQLQTLVFSKKDP 387 (394)
T ss_pred HHHhhhhhccccchhchhhheEEEecCCC
Confidence 99999999999999999999999987654
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.41 E-value=0.00039 Score=69.56 Aligned_cols=196 Identities=14% Similarity=0.164 Sum_probs=131.1
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCC
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (430)
..+++++|++.|.+.++.+++. ..++..++.++...|+++++.+.+..++.. +.............+...+...
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPET----VELHLALGNLFRRRGEVDRAIRIHQNLLSR--PDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred hcCChHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCcHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHC
Confidence 4467999999999999987653 467788999999999999999999988763 2222222223344444444331
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHH
Q 014143 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (430)
Q Consensus 108 ~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~ 187 (430)
.+ .+.....++..++. ..........++.++...|++++|.+.+..+....... . ......++..
T Consensus 121 g~--~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~---~~~~~~~~~~ 185 (389)
T PRK11788 121 GL--LDRAEELFLQLVDE------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS----L---RVEIAHFYCE 185 (389)
T ss_pred CC--HHHHHHHHHHHHcC------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc----c---hHHHHHHHHH
Confidence 12 33333343333321 11122345588999999999999999999887653211 1 1123445566
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 188 ~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
.+..+...|++.+|..+++++..... .. ...+...|.++...|++.+|...|-++..
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p-----~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADP-----QC-VRASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCc-----CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77788899999999999998865422 11 12334457888889999999999998865
No 24
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.40 E-value=8.9e-05 Score=71.25 Aligned_cols=174 Identities=14% Similarity=0.201 Sum_probs=127.6
Q ss_pred CCHHHHHHHHHHhhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCC
Q 014143 30 TDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (430)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (430)
+++++|.+.|.+..+... .+.....+++.+.+.+|.+. ++++++++|.+.+..+...-.....++....+.+.+.+.
T Consensus 49 ~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~ 127 (282)
T PF14938_consen 49 KDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ 127 (282)
T ss_dssp T-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT
T ss_pred hccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 357888888888765432 23344688999999998776 999999999999998845555778889999999999874
Q ss_pred -CCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHH
Q 014143 108 -ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (430)
Q Consensus 108 -~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l 186 (430)
++ .+...+.|+.+.+..+.......-..+..++|.++...|+|++|.+++.++-..+...+.. ....=+.++
T Consensus 128 ~~d--~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~-----~~~~~~~~l 200 (282)
T PF14938_consen 128 LGD--YEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL-----KYSAKEYFL 200 (282)
T ss_dssp T----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT-----GHHHHHHHH
T ss_pred cCC--HHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc-----chhHHHHHH
Confidence 34 7788899999999877644333444778899999999999999999999998876432111 111224566
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 187 IEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 187 ~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
..+-+++..||...|+..++.....
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6677888999999999998876544
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.30 E-value=0.00032 Score=70.16 Aligned_cols=197 Identities=8% Similarity=0.022 Sum_probs=94.7
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCC
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (430)
..+++++|++.+..+++............+..++.+|...|+++++.+.+....... +. . ......+...+...
T Consensus 81 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~-~----~~~~~~la~~~~~~ 154 (389)
T PRK11788 81 RRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DF-A----EGALQQLLEIYQQE 154 (389)
T ss_pred HcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cc-h----HHHHHHHHHHHHHh
Confidence 355678888888877765332222334567777888888888888887777776531 11 0 11112222222111
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHH
Q 014143 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (430)
Q Consensus 108 ~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~ 187 (430)
.+ .+...+.++...+. ...............+|..+.+.|++++|...+.+......+ ..+.+..
T Consensus 155 g~--~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~ 219 (389)
T PRK11788 155 KD--WQKAIDVAERLEKL-GGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ------------CVRASIL 219 (389)
T ss_pred ch--HHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC------------CHHHHHH
Confidence 11 22223333333321 000000001112235666666666666666666665544210 1233344
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 188 ~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
.++++...|++.+|...++++... +|..........+.++...+++.+|...|..+..
T Consensus 220 la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 220 LGDLALAQGDYAAAIEALERVEEQ-----DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH-----ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666666666665432 1211111222224445555666666666555543
No 26
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.27 E-value=8.9e-05 Score=76.06 Aligned_cols=213 Identities=16% Similarity=0.197 Sum_probs=146.3
Q ss_pred CCCHHHHHHHHHHhhcCCc----cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh--hhhhhHHHHHHHHHH
Q 014143 29 ETDPEGALAGFAEVVAMEP----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA--VTRNYSEKCINNIMD 102 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~----~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~--~~k~~~~k~v~~il~ 102 (430)
.+++++|+..|++.+.... .+.+...-.+.+|+.+|.+.|+++++-+++..-+.+.+.. .+...++..+..+..
T Consensus 254 ~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 254 LGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA 333 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 4568999999999987643 3445578899999999999999999999999999987441 345666666666666
Q ss_pred HhcCCCCCChhHHHHHHHHHHHHHHHhhhhh--hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcch
Q 014143 103 FVSGSASQNFSLLREFYQTTLKALEEAKNER--LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQ 180 (430)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~k--l~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~ 180 (430)
.+..... .+....++..+++.+..+.... ..-++.-+||.+|+..|+|++|.+++.+.........|-. ..
T Consensus 334 ~~~~~~~--~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~-----~~ 406 (508)
T KOG1840|consen 334 ILQSMNE--YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKK-----DY 406 (508)
T ss_pred HHHHhcc--hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCc-----Ch
Confidence 5554222 5667778888887766542222 3337777999999999999999988887776654332211 11
Q ss_pred HHHHHH-HHHHHHHhhcCHHHHHHHHHHHHhhhccCC--CchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHH
Q 014143 181 LLEVYA-IEIQMYTETKNNKKLKQLYQKALAIKSAIP--HPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (430)
Q Consensus 181 ~~e~~l-~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (430)
-+...+ ..+..|...+++..|-..+..+..+..... +|.+...+.-. |.+|...|+|..|..+--.+.
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL-~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNL-AALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHH-HHHHHHcccHHHHHHHHHHHH
Confidence 222222 223456788899999999999988773322 36555544433 345567888888776654443
No 27
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.25 E-value=0.00031 Score=66.65 Aligned_cols=201 Identities=14% Similarity=0.193 Sum_probs=135.8
Q ss_pred HHhhccc-CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 014143 21 SILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINN 99 (430)
Q Consensus 21 ~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~ 99 (430)
|+++=.+ ....+++|++.|..+++.+++ ++.+=-.+|.++++.|..|.++..=+.+... +..+-..-.-.+.+
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~----t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s--pdlT~~qr~lAl~q 112 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPE----TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES--PDLTFEQRLLALQQ 112 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCch----hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCCchHHHHHHHHH
Confidence 4444333 345699999999999886553 5777788999999999999999988888764 44444444444444
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHH-HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhc
Q 014143 100 IMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF-KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (430)
Q Consensus 100 il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~-r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~ 178 (430)
+...+.. . -+++.+-+....-.++--+. .-...|..||-...+|.+|.+.-.++.+..... ..
T Consensus 113 L~~Dym~-a--------Gl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~-------~~ 176 (389)
T COG2956 113 LGRDYMA-A--------GLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT-------YR 176 (389)
T ss_pred HHHHHHH-h--------hhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc-------ch
Confidence 4443322 1 12222222111111111111 223479999999999999999999998885422 13
Q ss_pred chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHH
Q 014143 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (430)
Q Consensus 179 ~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (430)
..+..+|.+.++-+...+|.++|+..+.+|...+... +.+.| ..|.+++..|+|..|.+.+-.+.
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c----vRAsi--~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKC----VRASI--ILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc----eehhh--hhhHHHHhccchHHHHHHHHHHH
Confidence 5678888888888999999999999999987654321 23333 34889999999999987766654
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.04 E-value=0.0016 Score=59.00 Aligned_cols=155 Identities=14% Similarity=0.166 Sum_probs=78.9
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|.+.++..++. ..+...++.++...|+++++.+.+...+... +... .....+...+....
T Consensus 44 ~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~-----~~~~~~~~~~~~~g 113 (234)
T TIGR02521 44 QGDLEVAKENLDKALEHDPDD----YLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNG-----DVLNNYGTFLCQQG 113 (234)
T ss_pred CCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCH-----HHHHHHHHHHHHcc
Confidence 446777777777777665432 3455667777777777777777777776653 2211 11111111111101
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
+ .+.....++.+++. ............+|.++...|++++|...+.+....... ..+.+...
T Consensus 114 ~--~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~l 175 (234)
T TIGR02521 114 K--YEQAMQQFEQAIED----PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ------------RPESLLEL 175 (234)
T ss_pred c--HHHHHHHHHHHHhc----cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------------ChHHHHHH
Confidence 1 22222233322221 000011122345666666777777777666666554211 12233444
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhh
Q 014143 189 IQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
++++...|++.+|..+++++...
T Consensus 176 a~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 176 AELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 56666667777776666666543
No 29
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.99 E-value=0.00089 Score=62.83 Aligned_cols=179 Identities=9% Similarity=0.101 Sum_probs=116.1
Q ss_pred hHHHHHHhhcccCC-CCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHH
Q 014143 16 SRVLCSILEKGLVE-TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (430)
Q Consensus 16 ~~~~~~~~ak~~~~-~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~ 94 (430)
+....|..|....+ +++++|++.|+++++..|. +++..++.-.++..|++.|+++++...++.+++.. |.-++..-+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-cCCCchHHH
Confidence 45557777777665 6899999999999988774 46778898999999999999999999999999987 653333222
Q ss_pred HHHHHHH---------HHhcCCC--CCChhHHHHHHHHHHHHHHHh--------hhhhhHH------HHhHHHHHHHHHh
Q 014143 95 KCINNIM---------DFVSGSA--SQNFSLLREFYQTTLKALEEA--------KNERLWF------KTNLKLCKIWFDM 149 (430)
Q Consensus 95 k~v~~il---------~~~~~~~--~~~~~~~~~~~~~~~e~l~~~--------~~~kl~~------r~~~~La~~~~~~ 149 (430)
--...+. ..+...+ +.+......-++...+.++.- ...++.. +-.+..|++|.+.
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~ 188 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKR 188 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2222111 1111111 111112222222232333321 0122111 3355889999999
Q ss_pred ccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHH
Q 014143 150 GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLY 205 (430)
Q Consensus 150 g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l 205 (430)
|.|..|..-.+.+...-++++ ..-+.+...++.|..+|....|+...
T Consensus 189 ~~y~AA~~r~~~v~~~Yp~t~---------~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 189 GAYVAVVNRVEQMLRDYPDTQ---------ATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred CchHHHHHHHHHHHHHCCCCc---------hHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 999999988888888765432 23455566667888999998887764
No 30
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=0.035 Score=58.75 Aligned_cols=219 Identities=16% Similarity=0.161 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHH---HhhhccCCCchhHHHHHHhhhHhhhhhhcHHH---HHHHHHHHHHhhhh
Q 014143 181 LLEVYAIEIQMYTETKNNKKLKQLYQKA---LAIKSAIPHPRIMGIIRECGGKMHMAERQWAD---AATDFFEAFKNYDE 254 (430)
Q Consensus 181 ~~e~~l~~~~l~~~~~d~~ka~~~l~~a---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~---A~~~f~ea~~~~~~ 254 (430)
.++.-+.+..+...++=|..|-..+... .++....+-|..++.||.-...+++..||+.= |-..||..+.+++.
T Consensus 231 ~LDtRf~QLdvAi~lELWQEAyrSiEDIhgLm~lSKrtPkp~~laNYY~KL~~VF~~sgn~LfHAaAw~k~f~l~k~~~K 310 (988)
T KOG2072|consen 231 YLDTRFQQLDVAIELELWQEAYRSIEDIHGLMKLSKRTPKPSTLANYYEKLAKVFWKSGNPLFHAAAWLKLFKLYKNMNK 310 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhcc
Confidence 3455555555566666666654444433 44555566789999998877888888888643 44444444433332
Q ss_pred -hcchhHHHHHHHHHHHHHhhC-----CCCCCCCccccc---------cCCCC---cc-hHHHHHHHH----HHhhCCHH
Q 014143 255 -AGNQRRIQCLKYLVLANMLME-----SEVNPFDGQEAK---------PYKND---PE-ILAMTNLIA----AYQRNEII 311 (430)
Q Consensus 255 -~~~~~~~~~lky~~l~~lL~~-----~~~~~~~~~~~~---------~~~~~---~~-~~~l~~L~~----af~~~dl~ 311 (430)
....+.......++|++|=.+ ++..++...+-. ...+. |. ..-++.++. .+...++.
T Consensus 311 ~~Tqde~q~~as~VlLaaLSIP~~~~~~~~~r~~e~e~~~~ek~~rla~LL~L~~~PTR~~ll~e~v~~gV~~~v~qe~k 390 (988)
T KOG2072|consen 311 NLTQDELQRMASRVLLAALSIPIPDARSDSARLIEIEDIGKEKNLRLANLLGLPAPPTRKGLLKEAVREGVLSKVDQEVK 390 (988)
T ss_pred cccHHHHHHHHHHHHHHHhcCCCCCcccccccccccccchhhHHHHHHHHhCCCCCccHHHHHHHHHHhccHhhhhHHHH
Confidence 222244444556677765222 001111000000 00111 11 111222221 12223333
Q ss_pred HHHHHHHH-------------hHHhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhC-CChHHHHHHHH
Q 014143 312 EFEKILKS-------------NRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELN-VPEKDVEQLLV 377 (430)
Q Consensus 312 ~f~~~l~~-------------~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~-l~~~evE~~l~ 377 (430)
..-++|+. .-+.+...|...+++..|.+.+..+.+.+++.-|.+|++++|.++.- ++.-++|+.++
T Consensus 391 dLY~iLEveF~PL~l~k~lq~ll~~ls~~~~~~QYI~sLq~v~~~RllqQvSqiY~sIs~~~l~~La~F~~~~~lEk~~v 470 (988)
T KOG2072|consen 391 DLYNILEVEFHPLKLCKKLQPLLDKLSESPDKSQYIPSLQDVIILRLLQQVSQIYESISFERLYKLAPFFSAFELEKLLV 470 (988)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCccccchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHHHHHHH
Confidence 33333322 11224455666888999999999999999999999999999999876 48889999999
Q ss_pred HhhhcCceeEeeeccCCEEEEc
Q 014143 378 SLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 378 ~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
+....+-+..+||+..++|.|.
T Consensus 471 ~a~k~~~v~iriDH~~~~v~Fg 492 (988)
T KOG2072|consen 471 EAAKHNDVSIRIDHESNSVSFG 492 (988)
T ss_pred HHHhccceeEEeccccceeeec
Confidence 9999999999999999999998
No 31
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.97 E-value=0.0009 Score=71.57 Aligned_cols=189 Identities=13% Similarity=0.056 Sum_probs=129.0
Q ss_pred CCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCC
Q 014143 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (430)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (430)
+++++|++.|.+.++..... .....++..++.++...|+++++++.+...+... +....... .+...+....+
T Consensus 308 ~~y~~A~~~~~~al~~~~~~-~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~-----~la~~~~~~g~ 380 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLG-EKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYI-----KRASMNLELGD 380 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHH-----HHHHHHHHCCC
Confidence 46899999999998765311 2235678889999999999999999999998864 43222111 11111111111
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHH
Q 014143 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (430)
Q Consensus 110 ~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~ 189 (430)
.+.....++.+++. ..+ ...+...+|.++...|++++|...+++....-. .....+...+
T Consensus 381 --~~eA~~~~~~al~~---~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P------------~~~~~~~~la 440 (615)
T TIGR00990 381 --PDKAEEDFDKALKL---NSE---DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP------------DFIFSHIQLG 440 (615)
T ss_pred --HHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc------------cCHHHHHHHH
Confidence 33334444444331 111 123456889999999999999999999887732 1234566677
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 190 QMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 190 ~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
.++...|++.+|...++++.... |. ....+...|.++...|+|.+|...|-.+...
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~-----P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNF-----PE-APDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-----CC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 88999999999999999887542 21 1223445588888999999999999999764
No 32
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.96 E-value=0.0016 Score=69.68 Aligned_cols=191 Identities=10% Similarity=0.143 Sum_probs=126.0
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|+..|+++++.+|.. ..++..++.++...|+++++.+.+...+... +... .....+...+....
T Consensus 344 ~g~~~eA~~~~~kal~l~P~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~-----~~~~~lg~~~~~~g 413 (615)
T TIGR00990 344 KGKHLEALADLSKSIELDPRV----TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDP-----DIYYHRAQLHFIKG 413 (615)
T ss_pred cCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-----HHHHHHHHHHHHcC
Confidence 567999999999999988753 4567788999999999999999999998864 3321 12222222222211
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
+ .+.....++.+++. ..+.. .....+|.++...|++++|...+.+....... ..+++...
T Consensus 414 ~--~~~A~~~~~kal~l----~P~~~--~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~------------~~~~~~~l 473 (615)
T TIGR00990 414 E--FAQAGKDYQKSIDL----DPDFI--FSHIQLGVTQYKEGSIASSMATFRRCKKNFPE------------APDVYNYY 473 (615)
T ss_pred C--HHHHHHHHHHHHHc----CccCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------ChHHHHHH
Confidence 2 33444445444432 11112 23458999999999999999999998876431 12455556
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCCc--hhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHP--RIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
+.++...|++.+|...++++..+....... .+.. +....+.++...++|.+|...|-++..
T Consensus 474 g~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~-l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 474 GELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP-LINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 778889999999999999998765432111 1111 111223333346889999988888765
No 33
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.89 E-value=0.0019 Score=58.83 Aligned_cols=174 Identities=13% Similarity=0.171 Sum_probs=101.5
Q ss_pred HHHHHHhhcccC-CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 014143 17 RVLCSILEKGLV-ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK 95 (430)
Q Consensus 17 ~~~~~~~ak~~~-~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k 95 (430)
....|..|.... .+++.+|++.|..++...|. +++...+.-.++..+++.|+++++...++.++..+ |.-+...-+-
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P~~~~~~~A~ 82 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPN-SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-PNSPKADYAL 82 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhhHH
Confidence 345666776654 45799999999999887664 45678899999999999999999999999999987 7533221111
Q ss_pred HHHHHHHHhcCCC-----CCChhHHHHHHHHHHHHHHHhh--------hhhh-HH-----HHhHHHHHHHHHhccHHHHH
Q 014143 96 CINNIMDFVSGSA-----SQNFSLLREFYQTTLKALEEAK--------NERL-WF-----KTNLKLCKIWFDMGEYGRMS 156 (430)
Q Consensus 96 ~v~~il~~~~~~~-----~~~~~~~~~~~~~~~e~l~~~~--------~~kl-~~-----r~~~~La~~~~~~g~~~~A~ 156 (430)
-. ..+..+...+ +.+.....+-+....+.++.-+ ..++ .+ +-.+.+|++|+..|.|..|.
T Consensus 83 Y~-~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 83 YM-LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HH-HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HH-HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 11 1111111000 1011122222222222222100 1111 11 33568899999999999999
Q ss_pred HHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHH
Q 014143 157 KILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLK 202 (430)
Q Consensus 157 ~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~ 202 (430)
.-.+.+...-.++ ...-+.....++.|..+|....++
T Consensus 162 ~r~~~v~~~yp~t---------~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 162 IRFQYVIENYPDT---------PAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHSTTS---------HHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHCCCC---------chHHHHHHHHHHHHHHhCChHHHH
Confidence 9999988876532 122344455567777888766443
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.0018 Score=63.99 Aligned_cols=201 Identities=15% Similarity=0.166 Sum_probs=129.6
Q ss_pred cCCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC
Q 014143 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (430)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (430)
++.+|+++|.+.|++.++.+. ....+|-+|+-.+-..|+.+++++++-++-..+ .+...+---+.++.+.+.+
T Consensus 501 f~ngd~dka~~~ykeal~nda----sc~ealfniglt~e~~~~ldeald~f~klh~il---~nn~evl~qianiye~led 573 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDA----SCTEALFNIGLTAEALGNLDEALDCFLKLHAIL---LNNAEVLVQIANIYELLED 573 (840)
T ss_pred eecCcHHHHHHHHHHHHcCch----HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHhhC
Confidence 457789999999999886643 367899999999999999999999987775543 2222222233344444543
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHH
Q 014143 107 SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (430)
Q Consensus 107 ~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l 186 (430)
|. +..+++-.+-.. ..++- .+..+||++|-+.|+-..|..+..+....+.- -+|.+-
T Consensus 574 -~a----qaie~~~q~~sl---ip~dp---~ilskl~dlydqegdksqafq~~ydsyryfp~------------nie~ie 630 (840)
T KOG2003|consen 574 -PA----QAIELLMQANSL---IPNDP---AILSKLADLYDQEGDKSQAFQCHYDSYRYFPC------------NIETIE 630 (840)
T ss_pred -HH----HHHHHHHHhccc---CCCCH---HHHHHHHHHhhcccchhhhhhhhhhcccccCc------------chHHHH
Confidence 22 333333322111 11221 23559999999999999999888887777541 133333
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHH
Q 014143 187 IEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKY 266 (430)
Q Consensus 187 ~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky 266 (430)
-..-+|+...-+.++-.++++|.-+.... ..-.++-+..+-..|+|..|+..|......| |+-.+||++
T Consensus 631 wl~ayyidtqf~ekai~y~ekaaliqp~~------~kwqlmiasc~rrsgnyqka~d~yk~~hrkf-----pedldclkf 699 (840)
T KOG2003|consen 631 WLAAYYIDTQFSEKAINYFEKAALIQPNQ------SKWQLMIASCFRRSGNYQKAFDLYKDIHRKF-----PEDLDCLKF 699 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCccH------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----ccchHHHHH
Confidence 33457777777889999998875332211 1111122222335789999998888887776 566778887
Q ss_pred HH
Q 014143 267 LV 268 (430)
Q Consensus 267 ~~ 268 (430)
++
T Consensus 700 lv 701 (840)
T KOG2003|consen 700 LV 701 (840)
T ss_pred HH
Confidence 65
No 35
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.86 E-value=0.0023 Score=59.35 Aligned_cols=171 Identities=11% Similarity=0.115 Sum_probs=107.1
Q ss_pred HHHHhhccc-CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhh------
Q 014143 19 LCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN------ 91 (430)
Q Consensus 19 ~~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~------ 91 (430)
..|..|... ..+++++|+..|..+++..|++ .|...+...++.++...|+++++++.+..++... +.-...
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~ 112 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRYPFS-PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHHHH
Confidence 344444444 3467999999999999887643 4566788999999999999999999999999876 532211
Q ss_pred -----------------hHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHH
Q 014143 92 -----------------YSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGR 154 (430)
Q Consensus 92 -----------------~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~ 154 (430)
...+.++.+-..+...|+.. .... ++..+.+.. ...-.....+|.+|+..|++.+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~----a~~~~~~~~--~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE--YAPD----AKKRMDYLR--NRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh--hHHH----HHHHHHHHH--HHHHHHHHHHHHHHHHcCChHH
Confidence 01111111111111112100 0000 000000000 0000123478999999999999
Q ss_pred HHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 014143 155 MSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (430)
Q Consensus 155 A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a 208 (430)
|...+.++.....+. ....+.+...++.+...|++.+|..+++..
T Consensus 185 A~~~~~~al~~~p~~---------~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 185 AINRFETVVENYPDT---------PATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHHHHHCCCC---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999998886532 234566777788999999999998877654
No 36
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.85 E-value=0.0094 Score=61.43 Aligned_cols=217 Identities=20% Similarity=0.217 Sum_probs=143.0
Q ss_pred CCCHHHHHHHHHHhhcCCc----cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh--hhhhHHHHHHHHHH
Q 014143 29 ETDPEGALAGFAEVVAMEP----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV--TRNYSEKCINNIMD 102 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~----~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~--~k~~~~k~v~~il~ 102 (430)
+++++.|+..++..+..-. -+..-....++.++.+|...++++++..+|+..++..+... .-..++....++-.
T Consensus 212 ~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ 291 (508)
T KOG1840|consen 212 QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAV 291 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4568899999888876521 12233455667799999999999999999999999875332 22333444444444
Q ss_pred HhcCCCCCChhHHHHHHHHHHHHHHHh--hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcch
Q 014143 103 FVSGSASQNFSLLREFYQTTLKALEEA--KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQ 180 (430)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~e~l~~~--~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~ 180 (430)
.+.+... .+-....++.+++..+.. .+....-.....++.++...+++++|..+++...+...+.+|.++ ..
T Consensus 292 ly~~~GK--f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~----~~ 365 (508)
T KOG1840|consen 292 LYYKQGK--FAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN----VN 365 (508)
T ss_pred HHhccCC--hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc----hH
Confidence 4433121 334455666666644431 111111133457888888999999999999988877665556543 35
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC---chhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 181 LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH---PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 181 ~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
...++...+.+|+..|.+..|..++.+|.+....... +...-.++. .|..+...++|.+|...|-++..-.
T Consensus 366 ~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~-la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 366 LAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ-LAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH-HHHHHHHhcccchHHHHHHHHHHHH
Confidence 6788888899999999999999999999776654332 222223332 3445566777888888888876544
No 37
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.84 E-value=0.033 Score=57.86 Aligned_cols=217 Identities=18% Similarity=0.194 Sum_probs=121.3
Q ss_pred HHHHhhcccCCC-CHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 014143 19 LCSILEKGLVET-DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI 97 (430)
Q Consensus 19 ~~~~~ak~~~~~-~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v 97 (430)
..+|.+.-+.+. ++++|++.+.+..+.-.| ....++.-++++.+.|+++++...|..|+... |. +..+.....
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~D----k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pd-n~~Yy~~L~ 79 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQILD----KLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PD-NYDYYRGLE 79 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CC-cHHHHHHHH
Confidence 344555555544 699999999886433333 36678889999999999999999999999975 53 333333332
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHHHHHh-hhhhh----------------HH---------HHhHHHHHHHHHhcc
Q 014143 98 NNIMDFVSGSASQNFSLLREFYQTTLKALEEA-KNERL----------------WF---------KTNLKLCKIWFDMGE 151 (430)
Q Consensus 98 ~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~-~~~kl----------------~~---------r~~~~La~~~~~~g~ 151 (430)
..+.-... .++.+.+....+|+...+..-.+ .-.|+ |+ .+-..|-.+|-+..+
T Consensus 80 ~~~g~~~~-~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 80 EALGLQLQ-LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEK 158 (517)
T ss_pred HHHhhhcc-cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhH
Confidence 22211111 01111223333333222211000 00000 00 111133344444444
Q ss_pred HHHHHHHHHHHHhhccCC---CCCc--chhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHH
Q 014143 152 YGRMSKILKELHKSCQRE---DGTD--DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRE 226 (430)
Q Consensus 152 ~~~A~~~l~el~~~~~~~---~~~~--d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~ 226 (430)
..-..+++.+........ ++.+ +....+.++=++...++.|...|++.+|-.++++|.... |. ...++.
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-----Pt-~~ely~ 232 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-----PT-LVELYM 232 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CC-cHHHHH
Confidence 333445555544432211 0000 000123334455666788999999999999999885432 32 345778
Q ss_pred hhhHhhhhhhcHHHHHHHHHHH
Q 014143 227 CGGKMHMAERQWADAATDFFEA 248 (430)
Q Consensus 227 ~~g~~~~~~~~y~~A~~~f~ea 248 (430)
.-|+++-+.|++.+|+..+-++
T Consensus 233 ~KarilKh~G~~~~Aa~~~~~A 254 (517)
T PF12569_consen 233 TKARILKHAGDLKEAAEAMDEA 254 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 8899999999999999887777
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.80 E-value=0.0037 Score=63.14 Aligned_cols=189 Identities=14% Similarity=0.242 Sum_probs=102.9
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHH----HHHHHH
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI----NNIMDF 103 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v----~~il~~ 103 (430)
..+++++|++.+.+..+.+|++ ..++..++.+|.+.|+|+++.+.+..+.+.. ..++......- ..++..
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~----~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~--~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRH----PEVLRLAEQAYIRTGAWSSLLDILPSMAKAH--VGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHH
Confidence 3566788888888887776654 4567777888888888888888888887753 22333222111 112222
Q ss_pred hcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHH
Q 014143 104 VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (430)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e 183 (430)
....++ .+......+..... .+-.......+|..+...|+.++|.+.+.+..+.-. + ..++.
T Consensus 239 ~~~~~~--~~~l~~~w~~lp~~------~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~------~----~~l~~ 300 (398)
T PRK10747 239 AMADQG--SEGLKRWWKNQSRK------TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY------D----ERLVL 300 (398)
T ss_pred HHHhcC--HHHHHHHHHhCCHH------HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------C----HHHHH
Confidence 221111 11222221111111 011123345788888899999999988888776421 1 11121
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 184 ~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
++. ....++..++...+++-.+. -++ ...+..+.|.++...++|.+|..+|-.+...
T Consensus 301 l~~-----~l~~~~~~~al~~~e~~lk~---~P~---~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 301 LIP-----RLKTNNPEQLEKVLRQQIKQ---HGD---TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHh-----hccCCChHHHHHHHHHHHhh---CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 111 12336666665554443321 221 1124455577777777777777777777544
No 39
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.79 E-value=0.00097 Score=57.24 Aligned_cols=122 Identities=20% Similarity=0.280 Sum_probs=89.0
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCC
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (430)
..++++.+.+.+..+++..++ ......+.-.+++.++..|+++++.+.|..++...
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~----------------------- 78 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANA----------------------- 78 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----------------------
Confidence 356788888888888877654 33456677778999999999999999888776632
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHH
Q 014143 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (430)
Q Consensus 108 ~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~ 187 (430)
|+.+. .. ...++||.++++.|+|++|...|..+... ...-.+...
T Consensus 79 ~d~~l--------------~~--------~a~l~LA~~~~~~~~~d~Al~~L~~~~~~-------------~~~~~~~~~ 123 (145)
T PF09976_consen 79 PDPEL--------------KP--------LARLRLARILLQQGQYDEALATLQQIPDE-------------AFKALAAEL 123 (145)
T ss_pred CCHHH--------------HH--------HHHHHHHHHHHHcCCHHHHHHHHHhccCc-------------chHHHHHHH
Confidence 22000 00 12458999999999999999999663221 223345667
Q ss_pred HHHHHHhhcCHHHHHHHHHHH
Q 014143 188 EIQMYTETKNNKKLKQLYQKA 208 (430)
Q Consensus 188 ~~~l~~~~~d~~ka~~~l~~a 208 (430)
...++...|++.+|+..|++|
T Consensus 124 ~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 124 LGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHh
Confidence 788999999999999999876
No 40
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.78 E-value=0.0031 Score=69.23 Aligned_cols=174 Identities=14% Similarity=0.172 Sum_probs=96.3
Q ss_pred HHHhhccc-CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhh--hHHH-
Q 014143 20 CSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN--YSEK- 95 (430)
Q Consensus 20 ~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~--~~~k- 95 (430)
.+..|+.. .++++++|+..|.+.+...|++ ..+...++.++...|+++++...+...+..- +.-... ..+.
T Consensus 25 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 99 (899)
T TIGR02917 25 LIEAAKSYLQKNKYKAAIIQLKNALQKDPND----AEARFLLGKIYLALGDYAAAEKELRKALSLG-YPKNQVLPLLARA 99 (899)
T ss_pred HHHHHHHHHHcCChHhHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CChhhhHHHHHHH
Confidence 45555554 4557999999999999887754 4567789999999999999999999987642 210000 0000
Q ss_pred -----HHHHHHHHhcCCC--C-CChhHHHH----------HHHHHHHHHHHhh-hhhhHHHHhHHHHHHHHHhccHHHHH
Q 014143 96 -----CINNIMDFVSGSA--S-QNFSLLRE----------FYQTTLKALEEAK-NERLWFKTNLKLCKIWFDMGEYGRMS 156 (430)
Q Consensus 96 -----~v~~il~~~~~~~--~-~~~~~~~~----------~~~~~~e~l~~~~-~~kl~~r~~~~La~~~~~~g~~~~A~ 156 (430)
-....++.+...+ + ........ .++.+.+.++.+. ...-.......+|.++...|++++|.
T Consensus 100 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~ 179 (899)
T TIGR02917 100 YLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEAR 179 (899)
T ss_pred HHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHH
Confidence 0011112221111 0 00000000 0111111111110 00001133457788888888888888
Q ss_pred HHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014143 157 KILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (430)
Q Consensus 157 ~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~ 210 (430)
+++.++...... ..+.+...+.++...|++.+|...++++..
T Consensus 180 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 221 (899)
T TIGR02917 180 ALIDEVLTADPG------------NVDALLLKGDLLLSLGNIELALAAYRKAIA 221 (899)
T ss_pred HHHHHHHHhCCC------------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 888887665221 123444556677777777777777777654
No 41
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.70 E-value=0.0027 Score=54.42 Aligned_cols=94 Identities=16% Similarity=0.230 Sum_probs=74.3
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
.+.+|..+.+.|++++|...|+.+..... ++ ...-...+..++++...|++.+|...++. +.++
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~-----d~----~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-------~~~~ 114 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANAP-----DP----ELKPLARLRLARILLQQGQYDEALATLQQ-------IPDE 114 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCC-----CH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHh-------ccCc
Confidence 45899999999999999999999988742 12 23334455667899999999999888744 3344
Q ss_pred hhHHHHHHhhhHhhhhhhcHHHHHHHHHHH
Q 014143 219 RIMGIIRECGGKMHMAERQWADAATDFFEA 248 (430)
Q Consensus 219 ~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea 248 (430)
...+......|.++...|++.+|...|..+
T Consensus 115 ~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 115 AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 456677888999999999999999998765
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.0024 Score=63.04 Aligned_cols=208 Identities=14% Similarity=0.194 Sum_probs=120.3
Q ss_pred CCCCHHHHHHHHHHhhcCCcc-chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh--------------hhhh
Q 014143 28 VETDPEGALAGFAEVVAMEPE-KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV--------------TRNY 92 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~-~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~--------------~k~~ 92 (430)
++.++.+||+.|.-.++.-|+ +.+...|.+.+|+..+.+.|.|+.++..|....+.. +.. ...+
T Consensus 249 kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~-pn~~a~~nl~i~~f~i~d~ek 327 (840)
T KOG2003|consen 249 KKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA-PNFIAALNLIICAFAIGDAEK 327 (840)
T ss_pred ehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC-ccHHhhhhhhhhheecCcHHH
Confidence 456789999999988876663 234467888889888888899988888887776643 321 1223
Q ss_pred HHHHHHHHHHHh---------cCCCCCChhHHH---------------------------------------HHHHHHHH
Q 014143 93 SEKCINNIMDFV---------SGSASQNFSLLR---------------------------------------EFYQTTLK 124 (430)
Q Consensus 93 ~~k~v~~il~~~---------~~~~~~~~~~~~---------------------------------------~~~~~~~e 124 (430)
..+..+.+++.= ....++....+. .=+++|+|
T Consensus 328 mkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle 407 (840)
T KOG2003|consen 328 MKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLE 407 (840)
T ss_pred HHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHH
Confidence 334444444321 110010000000 01233444
Q ss_pred HHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHH
Q 014143 125 ALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL 204 (430)
Q Consensus 125 ~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~ 204 (430)
.++....-.+-..+.+..|--++..|+|+.|.++|.-+.+.- .+. ..-.---++..++...-+++..|.++
T Consensus 408 ~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kd-------nk~--~saaa~nl~~l~flqggk~~~~aqqy 478 (840)
T KOG2003|consen 408 SLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKD-------NKT--ASAAANNLCALRFLQGGKDFADAQQY 478 (840)
T ss_pred HHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhcc-------chh--hHHHhhhhHHHHHHhcccchhHHHHH
Confidence 333321111222445567777889999999999988777662 110 11112223333333345689999998
Q ss_pred HHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 205 YQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 205 l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
-+.|..+. ++.+.-..-.|-+.+..|||.+|...|.|++.+
T Consensus 479 ad~aln~d------ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 479 ADIALNID------RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHhccc------ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 87775432 222222233466667789999999999998754
No 43
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.63 E-value=0.0082 Score=61.69 Aligned_cols=186 Identities=15% Similarity=0.193 Sum_probs=111.5
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
++..+-||+.|++.++.+|.- ..++.+++..+.+.|+-+++.++|.+-+.+- +. -+..++++...+.+.
T Consensus 299 qG~ldlAI~~Ykral~~~P~F----~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~-----hadam~NLgni~~E~- 367 (966)
T KOG4626|consen 299 QGLLDLAIDTYKRALELQPNF----PDAYNNLANALKDKGSVTEAVDCYNKALRLC-PN-----HADAMNNLGNIYREQ- 367 (966)
T ss_pred cccHHHHHHHHHHHHhcCCCc----hHHHhHHHHHHHhccchHHHHHHHHHHHHhC-Cc-----cHHHHHHHHHHHHHh-
Confidence 345567777777776666532 3456666666667777777777777666653 21 122333443333321
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
+ ..+-...+|..+++..-. +..-..+||.+|-++|++++|...+++....- ....+-+...
T Consensus 368 ~-~~e~A~~ly~~al~v~p~------~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~------------P~fAda~~Nm 428 (966)
T KOG4626|consen 368 G-KIEEATRLYLKALEVFPE------FAAAHNNLASIYKQQGNLDDAIMCYKEALRIK------------PTFADALSNM 428 (966)
T ss_pred c-cchHHHHHHHHHHhhChh------hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC------------chHHHHHHhc
Confidence 1 123344566666553111 11224488899999999999998888887762 2245566666
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
...|..+|+...|-+.|++|-.++.+.. .-.--.|.+|-..|+..+|...|.++++
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~nPt~A------eAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQINPTFA------EAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcCcHHH------HHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 6778888888888888888865543322 1112225556667777777777777754
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.61 E-value=0.0069 Score=61.42 Aligned_cols=191 Identities=17% Similarity=0.208 Sum_probs=115.0
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHH----HHHHHHh
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI----NNIMDFV 104 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v----~~il~~~ 104 (430)
.+++++|++.+....+..|++ ..++..++.++.+.|+|+++.+.+..+.+.- ..++......- ...++.-
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~----~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~--~~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRH----KEVLKLAEEAYIRSGAWQALDDIIDNMAKAG--LFDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 567899999999998887754 3577888999999999999999998888752 12222221111 1112111
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHH
Q 014143 105 SGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (430)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~ 184 (430)
...++ .+.+....+... ...+--.++...+|..+...|++++|.+.+.+..+...+ +. .....
T Consensus 240 ~~~~~--~~~L~~~~~~~p------~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd-----~~---~~~~~- 302 (409)
T TIGR00540 240 MADEG--IDGLLNWWKNQP------RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGD-----DR---AISLP- 302 (409)
T ss_pred HHhcC--HHHHHHHHHHCC------HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC-----cc---cchhH-
Confidence 11111 111111111110 011112244558899999999999999999999998543 21 11111
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHH
Q 014143 185 YAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFE 247 (430)
Q Consensus 185 ~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~e 247 (430)
+...-..+..+|..++...++++.+..+. +|. +.+..+.|.++...++|.+|.++|-.
T Consensus 303 -~l~~~~~l~~~~~~~~~~~~e~~lk~~p~--~~~--~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 303 -LCLPIPRLKPEDNEKLEKLIEKQAKNVDD--KPK--CCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred -HHHHhhhcCCCChHHHHHHHHHHHHhCCC--Chh--HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 11111223457778887777776643211 242 34556678999999999999998873
No 45
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.59 E-value=0.0081 Score=66.00 Aligned_cols=94 Identities=16% Similarity=0.183 Sum_probs=62.9
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
...++..+...|++++|..++.++...... ..+.+...++++...|++.+|...++++....+. ++
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~ 635 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADAAPD------------SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD--SA 635 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--Ch
Confidence 346788888888888888888887654221 1245556677788888888888888877543211 11
Q ss_pred hhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 219 ~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
..+...|.++...++|.+|...|..+..
T Consensus 636 ----~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 636 ----LALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1233446666677888888888877754
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.59 E-value=0.0048 Score=58.78 Aligned_cols=69 Identities=13% Similarity=0.275 Sum_probs=54.4
Q ss_pred hhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 132 ~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
.+--+|.++.+|+++...|+|+.|.+.+..+..- + ..++-++.-.....|..+|+.......++.+...
T Consensus 210 ~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--------n---~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 210 DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--------N---PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred CccceehhhhhhHHHHhccchHHHHHHHHHHHHh--------C---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 3444588899999999999999999999998776 2 1455566666667889999999998888877543
No 47
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.49 E-value=0.013 Score=67.34 Aligned_cols=198 Identities=10% Similarity=-0.009 Sum_probs=125.2
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHH--------HHH
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI--------NNI 100 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v--------~~i 100 (430)
.+++++|++.|++.++.+|++ ..+...++.+|.+.|+++++...++.++... +.-........+ ...
T Consensus 474 ~g~~~eA~~~~~~Al~~~P~~----~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~A 548 (1157)
T PRK11447 474 QGKWAQAAELQRQRLALDPGS----VWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAA 548 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHH
Confidence 568999999999999998864 2356789999999999999999999998754 432211111100 011
Q ss_pred HHHhcCCCCC----ChhHH------HHH------------HHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHH
Q 014143 101 MDFVSGSASQ----NFSLL------REF------------YQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKI 158 (430)
Q Consensus 101 l~~~~~~~~~----~~~~~------~~~------------~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~ 158 (430)
+..+...|.. +.... ..+ ++.+.+.++...+ -......||.++.+.|++++|.+.
T Consensus 549 l~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~---~~~~~~~La~~~~~~g~~~~A~~~ 625 (1157)
T PRK11447 549 LAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP---STRIDLTLADWAQQRGDYAAARAA 625 (1157)
T ss_pred HHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC---CchHHHHHHHHHHHcCCHHHHHHH
Confidence 1111111110 00000 000 1112222221111 113446899999999999999999
Q ss_pred HHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcH
Q 014143 159 LKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQW 238 (430)
Q Consensus 159 l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y 238 (430)
++++...-.+ ..+.+...++++...|++.+|...++.+...... ++. .....|.++...|++
T Consensus 626 y~~al~~~P~------------~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~--~~~----~~~~la~~~~~~g~~ 687 (1157)
T PRK11447 626 YQRVLTREPG------------NADARLGLIEVDIAQGDLAAARAQLAKLPATAND--SLN----TQRRVALAWAALGDT 687 (1157)
T ss_pred HHHHHHhCCC------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC--ChH----HHHHHHHHHHhCCCH
Confidence 9999887321 2356667778899999999999999877543211 122 222346777788999
Q ss_pred HHHHHHHHHHHHhh
Q 014143 239 ADAATDFFEAFKNY 252 (430)
Q Consensus 239 ~~A~~~f~ea~~~~ 252 (430)
.+|...|-.+....
T Consensus 688 ~eA~~~~~~al~~~ 701 (1157)
T PRK11447 688 AAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHHhhhC
Confidence 99999999987643
No 48
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.46 E-value=0.034 Score=57.76 Aligned_cols=213 Identities=13% Similarity=0.207 Sum_probs=127.9
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHHhhhh-h------hhhHHHHHHH
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYY--RLGKYKEMMDAYREMLTYIKSAV-T------RNYSEKCINN 99 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~--~~~~~~~l~e~~~~l~~~~~~~~-~------k~~~~k~v~~ 99 (430)
-++.++|...|..+++.+|++... .+.|....-+-. ...+.+.+.++|..+...+ |.- . .-......+.
T Consensus 51 Lg~~~eA~~~y~~Li~rNPdn~~Y-y~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y-p~s~~~~rl~L~~~~g~~F~~ 128 (517)
T PF12569_consen 51 LGRKEEAEKIYRELIDRNPDNYDY-YRGLEEALGLQLQLSDEDVEKLLELYDELAEKY-PRSDAPRRLPLDFLEGDEFKE 128 (517)
T ss_pred cCCHHHHHHHHHHHHHHCCCcHHH-HHHHHHHHhhhcccccccHHHHHHHHHHHHHhC-ccccchhHhhcccCCHHHHHH
Confidence 457899999999999999976443 333333322211 2235677888888886665 321 0 0000111122
Q ss_pred HHHH-----hcC-CCC---------CCh---hHHHHHHHHHHHHHHHhh-----------hhhhHHHHhHHHHHHHHHhc
Q 014143 100 IMDF-----VSG-SAS---------QNF---SLLREFYQTTLKALEEAK-----------NERLWFKTNLKLCKIWFDMG 150 (430)
Q Consensus 100 il~~-----~~~-~~~---------~~~---~~~~~~~~~~~e~l~~~~-----------~~kl~~r~~~~La~~~~~~g 150 (430)
.++. +.+ +|+ .+. .....+.+.....++... .....+-+..-||++|-..|
T Consensus 129 ~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g 208 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG 208 (517)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC
Confidence 2111 111 232 011 111122222222221110 01112234568999999999
Q ss_pred cHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc----------------
Q 014143 151 EYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA---------------- 214 (430)
Q Consensus 151 ~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~---------------- 214 (430)
++++|++++.+.-..++ -.+|+|..-++++-+.||+.+|-..++.|+....+
T Consensus 209 ~~~~Al~~Id~aI~htP------------t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 209 DYEKALEYIDKAIEHTP------------TLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG 276 (517)
T ss_pred CHHHHHHHHHHHHhcCC------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence 99999999998888753 25899999999999999999999999988632100
Q ss_pred -----------C--------CCchhHHHHHH--hhhHhhhhhhcHHHHHHHHHHHHHhhhhh
Q 014143 215 -----------I--------PHPRIMGIIRE--CGGKMHMAERQWADAATDFFEAFKNYDEA 255 (430)
Q Consensus 215 -----------~--------~~~~~~~~~~~--~~g~~~~~~~~y~~A~~~f~ea~~~~~~~ 255 (430)
. .+..-|.++|. -.|..|...|+|..|.+.|..+.+.|++.
T Consensus 277 ~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 277 RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDF 338 (517)
T ss_pred CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 0 01122445542 56888889999999999999998777654
No 49
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=97.46 E-value=0.00026 Score=60.76 Aligned_cols=84 Identities=24% Similarity=0.383 Sum_probs=66.0
Q ss_pred CcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHH
Q 014143 292 DPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKD 371 (430)
Q Consensus 292 ~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~e 371 (430)
+|++..+..|.+++.++++.+|-..++.+.. .+.+...+..|.+.+|+..+..+.+.|++|+++.+|+.||++.++
T Consensus 38 ~~~i~~i~~l~~~L~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~iR~~i~~~i~~aY~sIs~~~la~~Lg~~~~e 113 (143)
T PF10075_consen 38 DPEIKAIWSLGQALWEGDYSKFWQALRSNPW----SPDYKPFVPGFEDTIRERIAHLISKAYSSISLSDLAEMLGLSEEE 113 (143)
T ss_dssp -TTHHHHHHHHHHHHTT-HHHHHHHS-TT--------HHHHTSTTHHHHHHHHHHHHHHHH-SEE-HHHHHHHTTS-HHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHhccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHhCCCHHH
Confidence 5889999999999999999999876665311 245677788899999999999999999999999999999999888
Q ss_pred HHHHHHHh
Q 014143 372 VEQLLVSL 379 (430)
Q Consensus 372 vE~~l~~l 379 (430)
+++++.+-
T Consensus 114 l~~~~~~~ 121 (143)
T PF10075_consen 114 LEKFIKSR 121 (143)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88888874
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.41 E-value=0.029 Score=50.61 Aligned_cols=172 Identities=10% Similarity=-0.008 Sum_probs=112.0
Q ss_pred hhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHh
Q 014143 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (430)
Q Consensus 50 ~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~ 129 (430)
......++.+++..+...|+++++.+.+...+... +... .....+...+.... +.+...+.++.+++. .
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~-----~~~~~la~~~~~~~--~~~~A~~~~~~al~~---~ 95 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDY-----LAYLALALYYQQLG--ELEKAEDSFRRALTL---N 95 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccH-----HHHHHHHHHHHHcC--CHHHHHHHHHHHHhh---C
Confidence 34457888999999999999999999999988764 3211 11111222222111 133344455544442 1
Q ss_pred hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014143 130 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (430)
Q Consensus 130 ~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~ 209 (430)
.+. ......+|.++...|++++|.+.+.+....... ......+...+.++...|++.+|...+.++.
T Consensus 96 ~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (234)
T TIGR02521 96 PNN---GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY----------PQPARSLENAGLCALKAGDFDKAEKYLTRAL 162 (234)
T ss_pred CCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc----------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111 123457899999999999999999988754211 1122344455778889999999999999887
Q ss_pred hhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 210 AIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
...+. + ...+...|.++...++|.+|...|-++...
T Consensus 163 ~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 163 QIDPQ--R----PESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HhCcC--C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 54321 1 123345578888899999999988887654
No 51
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.41 E-value=0.02 Score=62.97 Aligned_cols=197 Identities=9% Similarity=0.085 Sum_probs=125.8
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|+++++..+..... +...++.+|...|+++++..+|..++..- +....... .....+.-.+.+ .
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~---a~~~la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~-~~~~~L~~a~~~-~ 323 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW---AQRWVASAYLKLHQPEKAQSILTELFYHP-ETIADLSD-EELADLFYSLLE-S 323 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH---HHHHHHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCCh-HHHHHHHHHHHh-c
Confidence 356899999999998765322221 22235889999999999999999987642 21100001 111111111111 1
Q ss_pred CCChhHHHHHHHHHHHHHHHhhh------------hhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchh
Q 014143 109 SQNFSLLREFYQTTLKALEEAKN------------ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQK 176 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~------------~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~ 176 (430)
+ ..+.....++.+.+. ... +--+......+|.++...|++++|.+.++++....+.
T Consensus 324 g-~~~eA~~~l~~~~~~---~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-------- 391 (765)
T PRK10049 324 E-NYPGALTVTAHTINN---SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-------- 391 (765)
T ss_pred c-cHHHHHHHHHHHhhc---CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------
Confidence 1 122233333333221 110 0123344568999999999999999999999877421
Q ss_pred hcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhh
Q 014143 177 KGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (430)
Q Consensus 177 ~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (430)
..+++...+.++...|++.+|...++++.... |.-.. ++...|..++..++|.+|...+-++...+.
T Consensus 392 ----n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-----Pd~~~-l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 392 ----NQGLRIDYASVLQARGWPRAAENELKKAEVLE-----PRNIN-LEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----CCChH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 14677788889999999999999999987543 32222 445567788889999999999999877553
No 52
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.019 Score=61.88 Aligned_cols=200 Identities=16% Similarity=0.156 Sum_probs=122.0
Q ss_pred HHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH-----------
Q 014143 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNI----------- 100 (430)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~i----------- 100 (430)
.+.|...|..++++.|++ .=+|--=+.+.+..|||-.++.+|+.++-.. +. .++-.--.+-.+
T Consensus 146 ~~~A~a~F~~Vl~~sp~N----il~LlGkA~i~ynkkdY~~al~yyk~al~in-p~-~~aD~rIgig~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDN----ILALLGKARIAYNKKDYRGALKYYKKALRIN-PA-CKADVRIGIGHCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHHhhCCcc----hHHHHHHHHHHhccccHHHHHHHHHHHHhcC-cc-cCCCccchhhhHHHhccchhhHH
Confidence 578999999998887654 1222223456788899999999999977654 32 111111011111
Q ss_pred --HHHhcC-CCCCChhHHHHHHHHHHHHHHHhhhhhhH---H----------HHhHHHHHHHHHhccHHHHHHHHHHHHh
Q 014143 101 --MDFVSG-SASQNFSLLREFYQTTLKALEEAKNERLW---F----------KTNLKLCKIWFDMGEYGRMSKILKELHK 164 (430)
Q Consensus 101 --l~~~~~-~~~~~~~~~~~~~~~~~e~l~~~~~~kl~---~----------r~~~~La~~~~~~g~~~~A~~~l~el~~ 164 (430)
.....+ .|. ..+...-+..+-+..-+.-+.++.. . -+...||..++..|+|..+..+....-.
T Consensus 220 ~a~~ralqLdp~-~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 220 LAFERALQLDPT-CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHHHHhcChh-hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 111000 111 1111111111111110000111100 0 2345899999999999999998888777
Q ss_pred hccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHH
Q 014143 165 SCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATD 244 (430)
Q Consensus 165 ~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~ 244 (430)
.+.. ...+.+-+...+|.|+++||+.+|..+|-.|.+..+.-.--...| -|-++++++++..|..+
T Consensus 299 ~t~~---------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G-----lgQm~i~~~dle~s~~~ 364 (1018)
T KOG2002|consen 299 NTEN---------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG-----LGQMYIKRGDLEESKFC 364 (1018)
T ss_pred hhhh---------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc-----hhHHHHHhchHHHHHHH
Confidence 7532 255677788889999999999999999999987765442111122 27788899999999999
Q ss_pred HHHHHHhh
Q 014143 245 FFEAFKNY 252 (430)
Q Consensus 245 f~ea~~~~ 252 (430)
|...++.+
T Consensus 365 fEkv~k~~ 372 (1018)
T KOG2002|consen 365 FEKVLKQL 372 (1018)
T ss_pred HHHHHHhC
Confidence 99987755
No 53
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=97.40 E-value=0.0041 Score=61.98 Aligned_cols=186 Identities=17% Similarity=0.225 Sum_probs=108.1
Q ss_pred HHHHHH--HHHHHHhhcCHHHHHHHHHHHHhhhccCCC--chhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhh--
Q 014143 182 LEVYAI--EIQMYTETKNNKKLKQLYQKALAIKSAIPH--PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA-- 255 (430)
Q Consensus 182 ~e~~l~--~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~-- 255 (430)
+.++.. ..|++.-+|||..|-..++...-....++. |--+-.+..+-|-.|+.-|+|.+|.+.|..+.-.....
T Consensus 120 LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~ 199 (404)
T PF10255_consen 120 LGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKN 199 (404)
T ss_pred hhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444433 458899999999877765543111111111 22233345667999999999999999999985322211
Q ss_pred ----cchh-------HHHHHHHHHHHHHhhCCCCC-CCCccccccCCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHh
Q 014143 256 ----GNQR-------RIQCLKYLVLANMLMESEVN-PFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKT 323 (430)
Q Consensus 256 ----~~~~-------~~~~lky~~l~~lL~~~~~~-~~~~~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~ 323 (430)
.+.. .-++.--+++|..|++..++ +..+..--+| .+=......+|+..|.+......+.
T Consensus 200 ~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky---------~ek~~kmq~gd~~~f~elF~~acPK 270 (404)
T PF10255_consen 200 QYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKY---------GEKMEKMQRGDEEAFEELFSFACPK 270 (404)
T ss_pred hhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---------HHHHHHHHccCHHHHHHHHHhhCCC
Confidence 1111 11222234445555543322 1111111011 1122234567999999888765543
Q ss_pred hcC----------------ChhHHHHHHHHHHHHHHH----HHHHhcccccccchhhHHhHhCCChHHHHHHHH
Q 014143 324 IMD----------------DPFIRNYIEDLLKNVRTQ----VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLV 377 (430)
Q Consensus 324 l~~----------------D~~l~~~~~~L~~~i~~~----~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~ 377 (430)
|-. || ...|++.+.+.|..+ .|+.+.+-|++|+++.+|..++++++++...|+
T Consensus 271 FIsp~~pp~~~~~~~~~~~e~-~~~Ql~~Fl~eV~~q~~l~~lRSyLKLYtti~l~KLA~fl~vd~~~lr~~Ll 343 (404)
T PF10255_consen 271 FISPVSPPDYDGPSQNKNKEP-YRRQLKLFLDEVKQQQKLPTLRSYLKLYTTIPLEKLASFLDVDEEELRSQLL 343 (404)
T ss_pred ccCCCCCCCcccccchhhhhH-HHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCHHHHHHHcCCCHHHHHHHHH
Confidence 321 33 234555666555554 778888899999999999999999987655544
No 54
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.36 E-value=0.013 Score=67.37 Aligned_cols=189 Identities=8% Similarity=0.014 Sum_probs=122.1
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCC
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (430)
..+++++|++.|+++++.++++ ..++..++.++...|+++++.++|+..+... +... .....+...+..
T Consensus 363 ~~g~~~eA~~~~~~Al~~~P~~----~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~-----~a~~~L~~l~~~- 431 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVDNTD----SYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNT-----NAVRGLANLYRQ- 431 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-----HHHHHHHHHHHh-
Confidence 5668999999999999988754 3577889999999999999999999999875 4321 122223222221
Q ss_pred CCCChhHHHHHHHHHHHHHHHh---hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHH
Q 014143 108 ASQNFSLLREFYQTTLKALEEA---KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (430)
Q Consensus 108 ~~~~~~~~~~~~~~~~e~l~~~---~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~ 184 (430)
.+ .+....+++.....-... ....+.......+|..+...|++++|.+.+++....-. ++ ..+
T Consensus 432 ~~--~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-----~~-------~~~ 497 (1157)
T PRK11447 432 QS--PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-----GS-------VWL 497 (1157)
T ss_pred cC--HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC-------HHH
Confidence 11 112223332221110000 01112223445789999999999999999999987732 11 245
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHH
Q 014143 185 YAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFE 247 (430)
Q Consensus 185 ~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~e 247 (430)
+...+.++...|++.+|...++++...... +|. .....|.++...+++.+|...+-.
T Consensus 498 ~~~LA~~~~~~G~~~~A~~~l~~al~~~P~--~~~----~~~a~al~l~~~~~~~~Al~~l~~ 554 (1157)
T PRK11447 498 TYRLAQDLRQAGQRSQADALMRRLAQQKPN--DPE----QVYAYGLYLSGSDRDRAALAHLNT 554 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHH----HHHHHHHHHHhCCCHHHHHHHHHh
Confidence 667778999999999999999987643221 222 122335666677788888776554
No 55
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.17 E-value=0.062 Score=49.95 Aligned_cols=179 Identities=11% Similarity=0.113 Sum_probs=117.4
Q ss_pred hhhHHHHHHhhccc-CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhh
Q 014143 14 TVSRVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNY 92 (430)
Q Consensus 14 ~~~~~~~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~ 92 (430)
..+..+.|-++... ..+|+++|++.|+++....| -++|..++...++..+++.+++++++..+..++..+ |.-....
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p-~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-P~~~n~d 108 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHP-FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-PTHPNAD 108 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCCChh
Confidence 44778888888755 45589999999999965544 468889999999999999999999999999999987 7533222
Q ss_pred HHHHHHHHHHHhcCCCC--CChhHHHHHHHHHHHHHHHhh--------hhhhHH------HHhHHHHHHHHHhccHHHHH
Q 014143 93 SEKCINNIMDFVSGSAS--QNFSLLREFYQTTLKALEEAK--------NERLWF------KTNLKLCKIWFDMGEYGRMS 156 (430)
Q Consensus 93 ~~k~v~~il~~~~~~~~--~~~~~~~~~~~~~~e~l~~~~--------~~kl~~------r~~~~La~~~~~~g~~~~A~ 156 (430)
-+-=++.+. .+..+++ .+......-+....+.|+.-. ..++.. .-.+..|++|++.|.|-.|.
T Consensus 109 Y~~YlkgLs-~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 109 YAYYLKGLS-YFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred HHHHHHHHH-HhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 222222222 2222222 122333344444444444311 222221 44668999999999999999
Q ss_pred HHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHH
Q 014143 157 KILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL 204 (430)
Q Consensus 157 ~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~ 204 (430)
.-.+++...-+++ +..-+-+......|..+|-...|+..
T Consensus 188 nR~~~v~e~y~~t---------~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 188 NRFEEVLENYPDT---------SAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHHHHHHhccccc---------cchHHHHHHHHHHHHHhCChHHHHHH
Confidence 8888888774432 22234444455677778877766553
No 56
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.13 E-value=0.2 Score=54.42 Aligned_cols=185 Identities=14% Similarity=0.087 Sum_probs=103.7
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|.+.|.+.... ...++..++..|.+.|+++++.+++..+... + +.+.. .....++..+.+..
T Consensus 272 ~g~~~~A~~vf~~m~~~-------~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~--g-~~pd~--~t~~~ll~a~~~~g 339 (697)
T PLN03081 272 CGDIEDARCVFDGMPEK-------TTVAWNSMLAGYALHGYSEEALCLYYEMRDS--G-VSIDQ--FTFSIMIRIFSRLA 339 (697)
T ss_pred CCCHHHHHHHHHhCCCC-------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc--C-CCCCH--HHHHHHHHHHHhcc
Confidence 45678888888776322 1345677888888888888888888877553 2 22222 24555666655422
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
. .+...++++...+ . + -..-..+..-|...|.+.|++++|.+++.++... + +..+-..
T Consensus 340 ~--~~~a~~i~~~m~~---~-g-~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~--------d-------~~t~n~l 397 (697)
T PLN03081 340 L--LEHAKQAHAGLIR---T-G-FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK--------N-------LISWNAL 397 (697)
T ss_pred c--hHHHHHHHHHHHH---h-C-CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC--------C-------eeeHHHH
Confidence 2 2223333333222 1 0 0111123446788888888888888888776431 1 1123344
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
+..|...|+..+|..++++.... .+ .|.... +..-...+.+.|++.+|...|.+..+.+
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~--g~-~Pd~~T--~~~ll~a~~~~g~~~~a~~~f~~m~~~~ 456 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAE--GV-APNHVT--FLAVLSACRYSGLSEQGWEIFQSMSENH 456 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CC-CCCHHH--HHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 55677788888888888765421 11 122111 1111122446778888887777765433
No 57
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.06 E-value=0.041 Score=57.03 Aligned_cols=183 Identities=15% Similarity=0.164 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCC
Q 014143 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ 110 (430)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~ 110 (430)
+-.+|+..|.++.....+ ..| ++.|+|+.||..++|+++...+..+...- +- +-...++...++=.+.+ +.
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~w---vl~q~GrayFEl~~Y~~a~~~F~~~r~~~-p~--rv~~meiyST~LWHLq~--~v 404 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGW---VLSQLGRAYFELIEYDQAERIFSLVRRIE-PY--RVKGMEIYSTTLWHLQD--EV 404 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cc--cccchhHHHHHHHHHHh--hH
Confidence 457999999996444433 336 67899999999999999999998887653 31 22222233322222211 00
Q ss_pred ChhHHHHHHHHHHHHHHHhhhh-hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHH
Q 014143 111 NFSLLREFYQTTLKALEEAKNE-RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (430)
Q Consensus 111 ~~~~~~~~~~~~~e~l~~~~~~-kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~ 189 (430)
++--++.+.+....+. --| .-+|..|--++|++.|.+..+..-.. |+ ..- --|-+..
T Consensus 405 ------~Ls~Laq~Li~~~~~sPesW----ca~GNcfSLQkdh~~Aik~f~RAiQl--------dp---~fa-YayTLlG 462 (638)
T KOG1126|consen 405 ------ALSYLAQDLIDTDPNSPESW----CALGNCFSLQKDHDTAIKCFKRAIQL--------DP---RFA-YAYTLLG 462 (638)
T ss_pred ------HHHHHHHHHHhhCCCCcHHH----HHhcchhhhhhHHHHHHHHHHHhhcc--------CC---ccc-hhhhhcC
Confidence 0001111111111000 022 26788888889999999988776555 21 111 1122222
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 190 QMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 190 ~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
.=+.....+++|..++++|..+ +|+.-...+. .|.+|+..++|+.|--+|..|++
T Consensus 463 hE~~~~ee~d~a~~~fr~Al~~-----~~rhYnAwYG-lG~vy~Kqek~e~Ae~~fqkA~~ 517 (638)
T KOG1126|consen 463 HESIATEEFDKAMKSFRKALGV-----DPRHYNAWYG-LGTVYLKQEKLEFAEFHFQKAVE 517 (638)
T ss_pred ChhhhhHHHHhHHHHHHhhhcC-----CchhhHHHHh-hhhheeccchhhHHHHHHHhhhc
Confidence 2244556788999999888643 4554333333 38999999999999999999976
No 58
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.04 E-value=0.09 Score=56.74 Aligned_cols=52 Identities=10% Similarity=0.164 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (430)
..+++++|++.|.+++..+|++ ..++..++.++.+.|+++++.+.|...+..
T Consensus 88 ~~g~~~~A~~~l~~~l~~~P~~----~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l 139 (656)
T PRK15174 88 ASSQPDAVLQVVNKLLAVNVCQ----PEDVLLVASVLLKSKQYATVADLAEQAWLA 139 (656)
T ss_pred hcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3556788888888888777654 345666777778888888888877777765
No 59
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.97 E-value=0.16 Score=54.86 Aligned_cols=51 Identities=4% Similarity=-0.116 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (430)
.+++++|++.|.+.++.+|++ ..+...++.++...|+++++.+.+..+...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~----~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGN----SQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 457899999999998887754 345667788888999999888888776554
No 60
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.97 E-value=0.2 Score=46.28 Aligned_cols=192 Identities=11% Similarity=0.024 Sum_probs=110.8
Q ss_pred hhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHh
Q 014143 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (430)
Q Consensus 50 ~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~ 129 (430)
.++....+.+.+..+.+.|+++++...+..+++.. +. ++ ........+...+....+ .+.....++..++. .
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~-~~-~~~~a~~~la~~~~~~~~--~~~A~~~~~~~l~~---~ 100 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PF-SP-YAEQAQLDLAYAYYKSGD--YAEAIAAADRFIRL---H 100 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC-ch-hHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHH---C
Confidence 35567888999999999999999999999998875 42 11 111222222222222122 43444544444331 2
Q ss_pred hhhhhHHHHhHHHHHHHHHh--------ccHHHHHHHHHHHHhhccCCCCCcchhh-----cchHHHHHHHHHHHHHhhc
Q 014143 130 KNERLWFKTNLKLCKIWFDM--------GEYGRMSKILKELHKSCQREDGTDDQKK-----GSQLLEVYAIEIQMYTETK 196 (430)
Q Consensus 130 ~~~kl~~r~~~~La~~~~~~--------g~~~~A~~~l~el~~~~~~~~~~~d~~~-----~~~~~e~~l~~~~l~~~~~ 196 (430)
++....-.....+|..+... |++++|.+.++++...-.+......... ...........+.++...|
T Consensus 101 p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g 180 (235)
T TIGR03302 101 PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG 180 (235)
T ss_pred cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 22221112334566666654 8899999999998877443211100000 0000011234567788899
Q ss_pred CHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 197 NNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 197 d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
++.+|...++.+....+. +|. ....+...|..+...|+|.+|..+|-..-..|
T Consensus 181 ~~~~A~~~~~~al~~~p~--~~~-~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 181 AYVAAINRFETVVENYPD--TPA-TEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred ChHHHHHHHHHHHHHCCC--Ccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999988887543221 122 22344456888889999999998766554433
No 61
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.97 E-value=0.17 Score=45.95 Aligned_cols=168 Identities=13% Similarity=0.137 Sum_probs=99.8
Q ss_pred hhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhh
Q 014143 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 130 (430)
Q Consensus 51 ~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~ 130 (430)
+|..+.+-+.+.-+++.|+|+++.+.++.+...+ +. +|- ..
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-P~-------------------s~~-----a~-------------- 42 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRY-PN-------------------SPY-----AP-------------- 42 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--TT-------------------STT-----HH--------------
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC-------------------ChH-----HH--------------
Confidence 4567888999999999999999999999998876 32 111 00
Q ss_pred hhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHh------hcCHHHHHHH
Q 014143 131 NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE------TKNNKKLKQL 204 (430)
Q Consensus 131 ~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~------~~d~~ka~~~ 204 (430)
...+.+|..++..|+|.+|...++++...-++.+..+ -+.+....+.+... ..|...++..
T Consensus 43 ------~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-------~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A 109 (203)
T PF13525_consen 43 ------QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-------YALYMLGLSYYKQIPGILRSDRDQTSTRKA 109 (203)
T ss_dssp ------HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-------HHHHHHHHHHHHHHHHHH-TT---HHHHHH
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-------hHHHHHHHHHHHhCccchhcccChHHHHHH
Confidence 1245889999999999999999999888765432211 12222222221111 3455555555
Q ss_pred HHHHHhhhccCCC-c---hh----------HHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH
Q 014143 205 YQKALAIKSAIPH-P---RI----------MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLA 270 (430)
Q Consensus 205 l~~a~~~~~~~~~-~---~~----------~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~l~ 270 (430)
+..-..+....|+ + .. ++.--..-|..+...|.|..|...|-.+++.|... +....++.+++-+
T Consensus 110 ~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t--~~~~~al~~l~~~ 187 (203)
T PF13525_consen 110 IEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDT--PAAEEALARLAEA 187 (203)
T ss_dssp HHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTS--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCC--chHHHHHHHHHHH
Confidence 5555555555553 1 11 12222466889999999999999999999988433 3344455555554
Q ss_pred HH
Q 014143 271 NM 272 (430)
Q Consensus 271 ~l 272 (430)
-.
T Consensus 188 y~ 189 (203)
T PF13525_consen 188 YY 189 (203)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 62
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.95 E-value=0.44 Score=54.05 Aligned_cols=194 Identities=11% Similarity=0.096 Sum_probs=94.8
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.++.++|.+.|.+..+..... ....+..++..|.+.|+++++.+.|..+... + +.++ ....+.++..+....
T Consensus 485 ~G~vd~A~~vf~eM~~~Gv~P---dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~--G-v~PD--~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 485 SGKVDAMFEVFHEMVNAGVEA---NVHTFGALIDGCARAGQVAKAFGAYGIMRSK--N-VKPD--RVVFNALISACGQSG 556 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc--C-CCCC--HHHHHHHHHHHHHCC
Confidence 456788888888876543211 1345566777788888888888777776542 1 1111 112233333322211
Q ss_pred CCChhHHHHHHHHHH------------------------------HHHHHhhhh--hhHHHHhHHHHHHHHHhccHHHHH
Q 014143 109 SQNFSLLREFYQTTL------------------------------KALEEAKNE--RLWFKTNLKLCKIWFDMGEYGRMS 156 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~------------------------------e~l~~~~~~--kl~~r~~~~La~~~~~~g~~~~A~ 156 (430)
. .+...++++... +.++..... +-...+...+...|.+.|++++|.
T Consensus 557 ~--~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl 634 (1060)
T PLN03218 557 A--VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL 634 (1060)
T ss_pred C--HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHH
Confidence 1 111111111111 111100000 000122335566666777777777
Q ss_pred HHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhh
Q 014143 157 KILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAER 236 (430)
Q Consensus 157 ~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 236 (430)
+++.++...-..+ | ...|...+..|...|++.+|..++....+.. + .|.. ..+..-...+...|
T Consensus 635 ~lf~eM~~~Gv~P----D-------~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G--~-~pd~--~tynsLI~ay~k~G 698 (1060)
T PLN03218 635 SIYDDMKKKGVKP----D-------EVFFSALVDVAGHAGDLDKAFEILQDARKQG--I-KLGT--VSYSSLMGACSNAK 698 (1060)
T ss_pred HHHHHHHHcCCCC----C-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--C-CCCH--HHHHHHHHHHHhCC
Confidence 7777776542211 1 1234444566777777777777776654321 1 1211 12222234455677
Q ss_pred cHHHHHHHHHHH
Q 014143 237 QWADAATDFFEA 248 (430)
Q Consensus 237 ~y~~A~~~f~ea 248 (430)
++.+|...|.+.
T Consensus 699 ~~eeA~~lf~eM 710 (1060)
T PLN03218 699 NWKKALELYEDI 710 (1060)
T ss_pred CHHHHHHHHHHH
Confidence 777777776654
No 63
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.94 E-value=0.025 Score=45.72 Aligned_cols=103 Identities=9% Similarity=0.034 Sum_probs=77.0
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014143 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (430)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~ 217 (430)
+.+.+|..+...|++++|.+.+..+.....+ + ....+.+...++++...|++..|..++..+.... ++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~ 71 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK-----S----TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY---PK 71 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----c----cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC---CC
Confidence 3468899999999999999999999876431 1 2234556677889999999999999999876532 12
Q ss_pred chhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 218 ~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
...........|.++...+++.+|...|.++.+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 72 SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 11223344556778888999999999999998776
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=96.87 E-value=0.056 Score=57.07 Aligned_cols=150 Identities=8% Similarity=-0.099 Sum_probs=97.7
Q ss_pred CCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCC
Q 014143 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (430)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (430)
+++++|++.+++.++.+|++ ..++..++.++...|+++++...|++.+... |+
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-----------------------P~ 370 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNN----PQALGLLGLINTIHSEYIVGSLLFKQANLLS-----------------------PI 370 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------------------CC
Confidence 45789999999999998865 3456678899999999999999998887753 33
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHH
Q 014143 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (430)
Q Consensus 110 ~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~ 189 (430)
. . .....+|.++...|++++|...+......-.. + ...+....
T Consensus 371 ~-~------------------------~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-----~-------~~~~~~~~ 413 (553)
T PRK12370 371 S-A------------------------DIKYYYGWNLFMAGQLEEALQTINECLKLDPT-----R-------AAAGITKL 413 (553)
T ss_pred C-H------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----C-------hhhHHHHH
Confidence 0 0 01236677788888888888888887776321 1 01111122
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHH
Q 014143 190 QMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (430)
Q Consensus 190 ~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea 248 (430)
..++..|++.+|...+.++....+. .+|. .....|.++...|++.+|...|...
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p-~~~~----~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQ-DNPI----LLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccc-cCHH----HHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 2345567888888777766432110 0121 2333466677788888888877654
No 65
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.24 Score=45.75 Aligned_cols=170 Identities=14% Similarity=0.169 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhhcCCccc-hhh-hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCC
Q 014143 32 PEGALAGFAEVVAMEPEK-AEW-GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (430)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~-~~~-~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (430)
|++|-+.+.+-++-.+.+ .-| ..|++++++-+..+...|.++.++|.+-+...-..-++...+-.+...-+.+.+
T Consensus 47 feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~len--- 123 (308)
T KOG1585|consen 47 FEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALEN--- 123 (308)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc---
Confidence 566666666655332222 223 689999999999999999999999998887652333444455555666666654
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHH
Q 014143 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (430)
Q Consensus 110 ~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~ 189 (430)
.+.+....+|..++..++.-...+.-+...-+.+.++.....+.+|...+.+....-...... ..-...++..+
T Consensus 124 v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y------~~~~k~~va~i 197 (308)
T KOG1585|consen 124 VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY------NSQCKAYVAAI 197 (308)
T ss_pred CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc------ccHHHHHHHHH
Confidence 224467789999999888633333444555688888888889998876665544432111000 11234455667
Q ss_pred HHHHhhcCHHHHHHHHHHHHh
Q 014143 190 QMYTETKNNKKLKQLYQKALA 210 (430)
Q Consensus 190 ~l~~~~~d~~ka~~~l~~a~~ 210 (430)
-+|+...||..|+..++.+-.
T Consensus 198 lv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 198 LVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred HHHhhHHHHHHHHHHhcchhc
Confidence 788888999999998877543
No 66
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.83 E-value=0.17 Score=56.82 Aligned_cols=96 Identities=5% Similarity=-0.133 Sum_probs=71.4
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014143 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (430)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~ 217 (430)
....+|.++.+.|++++|...+.+....-.+ ..+.+...+.++...|++.+|...++++....+
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd------------~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P---- 674 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALELEPN------------NSNYQAALGYALWDSGDIAQSREMLERAHKGLP---- 674 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----
Confidence 3458899999999999999999998887321 124555666677788999999999988876432
Q ss_pred chhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 218 ~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
.. ..+....|.++...|++.+|..+|..+++.
T Consensus 675 -~~-~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 675 -DD-PALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred -CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 11 224445578888899999999999998753
No 67
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.73 E-value=0.045 Score=52.23 Aligned_cols=56 Identities=25% Similarity=0.374 Sum_probs=0.0
Q ss_pred hcccC-CCCHHHHHHHHHHhhcCC--ccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014143 24 EKGLV-ETDPEGALAGFAEVVAME--PEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (430)
Q Consensus 24 ak~~~-~~~~~~Ai~~~~~ii~~~--~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (430)
|+-+. .+++++|++.+.+.+... +++ ......++.++...|+++.+.+.|.+++..
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~----~~~~~~~a~La~~~~~~~~A~~ay~~l~~~ 73 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDD----PEYWRLLADLAWSLGDYDEAIEAYEKLLAS 73 (280)
T ss_dssp ---------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccc----cccccccccccccccccccccccccccccc
Confidence 44443 456899999986655544 222 244466788888888999999888888765
No 68
>KOG3250 consensus COP9 signalosome, subunit CSN7 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.72 E-value=0.0044 Score=55.31 Aligned_cols=128 Identities=14% Similarity=0.196 Sum_probs=91.1
Q ss_pred CcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCC-ChH
Q 014143 292 DPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNV-PEK 370 (430)
Q Consensus 292 ~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l-~~~ 370 (430)
.|...++..++..|..|++..+..--.. =|-+.. .=..+++..-+.-+...-++|...-+-..+.+ ++-
T Consensus 56 e~~dsa~lrlL~lFa~Gt~~Dy~aea~r-------lp~Ls~---~q~~kLk~ltV~slas~~k~lpy~~Ll~~l~~~nvr 125 (258)
T KOG3250|consen 56 EPIDSAYLRLLELFAYGTYRDYSAEALR-------LPKLSL---AQLNKLKHLTVVSLASFEKCLPYLVLLRLLPSRNVR 125 (258)
T ss_pred ccccHHHHHHHHHHhcCchhhhhhhhhc-------CCCCCH---HHHHhhhcceehhhhhhchhhhHHHHHhhccCCchh
Confidence 4666777889999999998876532211 121110 00111222222223333456666667777777 578
Q ss_pred HHHHHHHHhhhcCceeEeeeccCCEEEEcc-------CCccchHHHHHHHHHHHHHHHHHHHhhhc
Q 014143 371 DVEQLLVSLILDNRIDGHIDQVNRLLERGD-------RSKGMKKYTAIDKWNSQLRSLYQTVSNRV 429 (430)
Q Consensus 371 evE~~l~~lI~~g~i~g~IDq~~g~v~~~~-------~~~~~~~~~~l~~w~~~v~~l~~~v~~~~ 429 (430)
++|.+|++++-.+-+.|+|||-+.++++.+ +.+.++|.--|.+||+.-..++-.|++++
T Consensus 126 elEd~iieamya~IlrGkldqr~q~leV~faigRdlr~k~i~nm~~TL~~w~~~cenvL~~ie~qv 191 (258)
T KOG3250|consen 126 ELEDLIIEAMYADILRGKLDQRNQTLEVDFAIGRDLRSKDIDNMKYTLDEWCEGCENVLFGIEAQV 191 (258)
T ss_pred HHHHHHHHHHHHHHHHhhHHhhcceEeechhhcccccHhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999974 46777888999999999999999998876
No 69
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.71 E-value=0.049 Score=56.23 Aligned_cols=185 Identities=15% Similarity=0.163 Sum_probs=111.7
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
+++...||..|++.++.+|.- ..++.++|.+|...+.+|.++..|..-+... +. ... .--++.-.+-+ +
T Consensus 231 ~Gei~~aiq~y~eAvkldP~f----~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn----~A~-a~gNla~iYye-q 299 (966)
T KOG4626|consen 231 QGEIWLAIQHYEEAVKLDPNF----LDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN----HAV-AHGNLACIYYE-Q 299 (966)
T ss_pred cchHHHHHHHHHHhhcCCCcc----hHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc----chh-hccceEEEEec-c
Confidence 457889999999999888753 5688999999999999999999888776653 32 111 11111111111 1
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
+ ..+....-|+.+++. + -.|.....+||..+-+.|+..+|...+......|.+- .+-.-..
T Consensus 300 G-~ldlAI~~Ykral~~-~-----P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h------------adam~NL 360 (966)
T KOG4626|consen 300 G-LLDLAIDTYKRALEL-Q-----PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH------------ADAMNNL 360 (966)
T ss_pred c-cHHHHHHHHHHHHhc-C-----CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc------------HHHHHHH
Confidence 1 123333444444331 1 1233334578888888888888888888887776532 1222334
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHH
Q 014143 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (430)
..+|.+++.+..|-.+|.+|..+......+.- -.|.++-.+|++.+|..+|-|+.
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~p~~aaa~n------NLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVFPEFAAAHN------NLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhChhhhhhhh------hHHHHHHhcccHHHHHHHHHHHH
Confidence 45677778888888888877655332221110 11445556677777777777775
No 70
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.70 E-value=0.062 Score=47.39 Aligned_cols=108 Identities=16% Similarity=0.126 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
...+|..+...|++++|...+.+......+. ......+...+.++...|++.+|..++.++.........+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 108 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDP---------NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSA 108 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence 4589999999999999999999887763321 1134566777889999999999999999987653322111
Q ss_pred -hhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhh
Q 014143 219 -RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA 255 (430)
Q Consensus 219 -~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~ 255 (430)
...+.++...|......+++..|...|.++.+.+...
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a 146 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQA 146 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHH
Confidence 1224444455555555677888888877776666543
No 71
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.16 Score=51.90 Aligned_cols=174 Identities=17% Similarity=0.238 Sum_probs=123.6
Q ss_pred HHHHHHhhcccCCCCHHHHHHHHHHhhcCCcc-chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh-------
Q 014143 17 RVLCSILEKGLVETDPEGALAGFAEVVAMEPE-KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV------- 88 (430)
Q Consensus 17 ~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~-~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~------- 88 (430)
+|-+||-.= +++++|-+.|.+....++. ...| ...|..+.-.|.-|+++..|..-.+.+ +.-
T Consensus 317 aVg~YYl~i----~k~seARry~SKat~lD~~fgpaW-----l~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYl 386 (611)
T KOG1173|consen 317 AVGCYYLMI----GKYSEARRYFSKATTLDPTFGPAW-----LAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYL 386 (611)
T ss_pred hHHHHHHHh----cCcHHHHHHHHHHhhcCccccHHH-----HHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHH
Confidence 567777652 6689999999999877764 3456 456777888888888888887777665 321
Q ss_pred --------hhhhHHHHHHHHHHHhcCCCC------------CChhHHHHHHHHHHHHHHHhhhhhh-HHHHhHHHHHHHH
Q 014143 89 --------TRNYSEKCINNIMDFVSGSAS------------QNFSLLREFYQTTLKALEEAKNERL-WFKTNLKLCKIWF 147 (430)
Q Consensus 89 --------~k~~~~k~v~~il~~~~~~~~------------~~~~~~~~~~~~~~e~l~~~~~~kl-~~r~~~~La~~~~ 147 (430)
+-.-..+-..+.+.....-|- ........++..+++.++.+.++++ |-.+..+||+++.
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 222233344444443332120 1223345666777777777766665 7788889999999
Q ss_pred HhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 148 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 148 ~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
..+.|.+|....+.....++. -++.|...+-+|..+||+.+|-..+++|..+.
T Consensus 467 kl~~~~eAI~~~q~aL~l~~k------------~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLSPK------------DASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHhhHHHHHHHHHHHHHcCCC------------chhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 999999999999998888542 35788888889999999999999999997543
No 72
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.54 E-value=0.056 Score=51.57 Aligned_cols=187 Identities=10% Similarity=0.115 Sum_probs=73.5
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|.+++..++. ....+..++.+ ...++++++.++........ + .. ..+..++..+....
T Consensus 57 ~~~~~~A~~ay~~l~~~~~~----~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~-~--~~----~~l~~~l~~~~~~~ 124 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDKA----NPQDYERLIQL-LQDGDPEEALKLAEKAYERD-G--DP----RYLLSALQLYYRLG 124 (280)
T ss_dssp -------------------------------------------------------------------------H-HHHTT
T ss_pred cccccccccccccccccccc----ccccccccccc-cccccccccccccccccccc-c--cc----chhhHHHHHHHHHh
Confidence 34688999999999876543 23456677777 68899999988877654432 1 11 22223333333222
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
+ .+....+++.+..... .. -.......+|.++.+.|++++|.+.+++....-++ + .++....
T Consensus 125 ~--~~~~~~~l~~~~~~~~-~~---~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-----~-------~~~~~~l 186 (280)
T PF13429_consen 125 D--YDEAEELLEKLEELPA-AP---DSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-----D-------PDARNAL 186 (280)
T ss_dssp ---HHHHHHHHHHHHH-T-------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-------------HHHHHHH
T ss_pred H--HHHHHHHHHHHHhccC-CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----C-------HHHHHHH
Confidence 2 4344445444432111 11 11123457888999999999999999998888432 2 1233334
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
+.++...|+..+++.++....+... .+|.+. ..-|..+...|++.+|..+|.++...
T Consensus 187 ~~~li~~~~~~~~~~~l~~~~~~~~--~~~~~~----~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 187 AWLLIDMGDYDEAREALKRLLKAAP--DDPDLW----DALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHH-H--TSCCHC----HHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCChHHHHHHHHHHHHHCc--CHHHHH----HHHHHHhccccccccccccccccccc
Confidence 4566778888888888877655431 234433 23367777888999999999999764
No 73
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.48 E-value=0.013 Score=44.07 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=54.8
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
.+...+|.+|...|+|++|.+.+++...... ..|. + ....+..+...+.++...|++.+|..++++|.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~-~---~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEE-QLGD-D---HPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTT-H---HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HHCC-C---CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566899999999999999999999887732 2232 2 2345778888889999999999999999988654
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.45 E-value=0.42 Score=46.95 Aligned_cols=194 Identities=10% Similarity=-0.038 Sum_probs=117.3
Q ss_pred CCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCC
Q 014143 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (430)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (430)
++++.|.+.+..+....+.+... ......-+.++...|+++++.+.+...+... |.-. ..-.+ ...-.......
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~---~a~~~-~~~~~~~~~~~ 93 (355)
T cd05804 20 GERPAAAAKAAAAAQALAARATE-RERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDL---LALKL-HLGAFGLGDFS 93 (355)
T ss_pred CCcchHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcH---HHHHH-hHHHHHhcccc
Confidence 35677788888877665533221 1222234678889999999999999998875 4322 11110 00111100011
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHH
Q 014143 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (430)
Q Consensus 110 ~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~ 189 (430)
.......+ +++. .........-....+|.++...|++++|...+++....-.+ + ...+...+
T Consensus 94 ~~~~~~~~----~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-----~-------~~~~~~la 155 (355)
T cd05804 94 GMRDHVAR----VLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-----D-------AWAVHAVA 155 (355)
T ss_pred cCchhHHH----HHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----C-------cHHHHHHH
Confidence 01111111 1111 11111111122337888999999999999999998887321 1 23445557
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHH
Q 014143 190 QMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (430)
Q Consensus 190 ~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (430)
.++...|++.+|..++.++...... +|......+...|.++...|++.+|...|-++.
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 8889999999999999888654322 234334455567888999999999999988874
No 75
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.42 E-value=0.55 Score=53.28 Aligned_cols=51 Identities=14% Similarity=0.155 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHhhcCCcc-chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 014143 30 TDPEGALAGFAEVVAMEPE-KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLT 82 (430)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~-~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~ 82 (430)
+++++|.+.|.+..+.... ..+ ...+..++..|.+.|+++++.+.+..+.+
T Consensus 556 G~~deA~~lf~eM~~~~~gi~PD--~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 556 GAVDRAFDVLAEMKAETHPIDPD--HITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4567777777766542110 001 23455566666666666666666666654
No 76
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.40 E-value=0.062 Score=40.11 Aligned_cols=94 Identities=14% Similarity=0.206 Sum_probs=70.2
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
...+|..+...|++++|.+.+.++...... + ...+...+.++...+++.+|...++.+...... ++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~ 68 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-----N-------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPD--NA 68 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-----c-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--ch
Confidence 457899999999999999999998776321 1 145666778888899999999999887654321 12
Q ss_pred hhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 219 ~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
......|.++...+++..|..+|..+.+
T Consensus 69 ----~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 69 ----KAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred ----hHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 3344557778888999999988877754
No 77
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.37 E-value=0.12 Score=46.74 Aligned_cols=52 Identities=19% Similarity=0.353 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
..+.++++..++..+..+|++ ..+...++.+|...|+++++.+.|.+.+...
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~----~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~ 103 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN----SEQWALLGEYYLWRNDYDNALLAYRQALQLR 103 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 446799999999999998865 4466888999999999999999999888764
No 78
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.35 E-value=0.027 Score=43.25 Aligned_cols=82 Identities=20% Similarity=0.380 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
+++++.|+..|.++++.++.+. ....+-.++.+|++.|+++++.+.++. .+.- |
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-----------------------~ 55 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-----------------------P 55 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-----------------------H
T ss_pred CccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-----------------------C
Confidence 4679999999999998876422 245667799999999999999998887 3321 1
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKE 161 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~e 161 (430)
. . +.+...+|..+++.|+|++|.+.|.+
T Consensus 56 ~--~-----------------------~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 56 S--N-----------------------PDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp C--H-----------------------HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred C--C-----------------------HHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 1 0 01123568899999999999998875
No 79
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.32 E-value=0.047 Score=51.78 Aligned_cols=106 Identities=15% Similarity=0.153 Sum_probs=81.5
Q ss_pred HHHHHHhhccc--CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHH
Q 014143 17 RVLCSILEKGL--VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (430)
Q Consensus 17 ~~~~~~~ak~~--~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~ 94 (430)
+...|..|-++ +++++++|+..|+.+++..|+. .....+...+|.+|+..|++++++..|..+++.+ +.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s-~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-P~------- 212 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS-TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-PK------- 212 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CC-------
Confidence 45567777765 4578999999999999988753 2345788999999999999999999998888776 32
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccC
Q 014143 95 KCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (430)
Q Consensus 95 k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~ 168 (430)
+|. . . ...+++|.++.+.|++++|.+.++++.....+
T Consensus 213 ------------s~~--~------------------~-----dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 213 ------------SPK--A------------------A-----DAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred ------------Ccc--h------------------h-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 111 0 0 01347788899999999999999999887653
No 80
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.29 E-value=0.48 Score=53.38 Aligned_cols=191 Identities=10% Similarity=0.033 Sum_probs=105.8
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh------------hhHHH
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR------------NYSEK 95 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k------------~~~~k 95 (430)
..+++++|++.|++++...+... ....++.++.+.|+++++..++...+..- +.... ....+
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~~~-----a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMSNE-----DLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCCcH-----HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHH
Confidence 35668888888888765543321 23455677777777777777777666542 21110 11111
Q ss_pred HHHHHHHHhcCCCCC--------------ChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHH
Q 014143 96 CINNIMDFVSGSASQ--------------NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKE 161 (430)
Q Consensus 96 ~v~~il~~~~~~~~~--------------~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~e 161 (430)
.+..+-..+...|+. ..+.....++.+++ -..+.. .....+|.++.+.|++++|...+..
T Consensus 595 Al~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~---~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 595 ALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNS---NYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 111111122212220 01111111111111 011111 3455899999999999999999999
Q ss_pred HHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHH
Q 014143 162 LHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADA 241 (430)
Q Consensus 162 l~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A 241 (430)
....-+ + ..+++...+.++...|++..|..+++++.... |. .+.++...|.+...+.++..|
T Consensus 669 AL~l~P-----~-------~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-----P~-~a~i~~~~g~~~~~~~~~~~a 730 (987)
T PRK09782 669 AHKGLP-----D-------DPALIRQLAYVNQRLDDMAATQHYARLVIDDI-----DN-QALITPLTPEQNQQRFNFRRL 730 (987)
T ss_pred HHHhCC-----C-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CC-CchhhhhhhHHHHHHHHHHHH
Confidence 887732 1 23566677788999999999999999987543 22 233444445555555555555
Q ss_pred HHHHHHH
Q 014143 242 ATDFFEA 248 (430)
Q Consensus 242 ~~~f~ea 248 (430)
.+.+.-.
T Consensus 731 ~~~~~r~ 737 (987)
T PRK09782 731 HEEVGRR 737 (987)
T ss_pred HHHHHHH
Confidence 5544443
No 81
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.28 E-value=1.1 Score=50.05 Aligned_cols=215 Identities=10% Similarity=-0.058 Sum_probs=127.6
Q ss_pred CCCHHHHHHHHHHhhcCCc-----cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 014143 29 ETDPEGALAGFAEVVAMEP-----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDF 103 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~-----~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~ 103 (430)
.+++++|...+......-. ++......+....+.++...|+++++..++...+... +........-....+...
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEV 500 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHH
Confidence 4567888888877644211 1122223344456788899999999999999887643 321111011111111111
Q ss_pred hcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHH
Q 014143 104 VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (430)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e 183 (430)
... .+ +.+.....++.+++..+..............+|.++...|++++|...+.+.........+. + ......
T Consensus 501 ~~~-~G-~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~-~---~~~~~~ 574 (903)
T PRK04841 501 HHC-KG-ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE-Q---LPMHEF 574 (903)
T ss_pred HHH-cC-CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc-c---ccHHHH
Confidence 111 11 13344455555555433322222223455689999999999999999998887765432111 1 011122
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 184 ~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
.+...+.++...|++..|...+..+........ +..........|.++...|++..|...+-++...
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENL 641 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344556778889999999999998866544332 2223333445688888999999999988887553
No 82
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.28 E-value=0.086 Score=46.20 Aligned_cols=108 Identities=16% Similarity=0.062 Sum_probs=80.9
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014143 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (430)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~ 217 (430)
....+|..+...|++++|...+........++ ......+...+.++...|++.+|..+++++..+......
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~---------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~ 107 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP---------YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQ 107 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccc---------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence 34588999999999999999999888774321 123346677788999999999999999999866433222
Q ss_pred -chhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhh
Q 014143 218 -PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (430)
Q Consensus 218 -~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (430)
....+.++...|..+...|+|..|..+|-+++..|..
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 145 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ 145 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 2234566666677777899999999999988877654
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.27 E-value=1.2 Score=43.01 Aligned_cols=122 Identities=15% Similarity=0.126 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCC
Q 014143 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ 110 (430)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~ 110 (430)
..+.+|..+.+++...+-+.+.....+.+.|.+|...|+++++...|++.++.. +.... ....+...+....+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~-----a~~~lg~~~~~~g~- 113 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMAD-----AYNYLGIYLTQAGN- 113 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHH-----HHHHHHHHHHHCCC-
Confidence 368899999999876542233346778889999999999999999999888864 43322 22223222222112
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014143 111 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (430)
Q Consensus 111 ~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~ 166 (430)
.+.....++.+++. .+ .+ ......+|.++...|++++|.+.+.......
T Consensus 114 -~~~A~~~~~~Al~l-~P-~~----~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~ 162 (296)
T PRK11189 114 -FDAAYEAFDSVLEL-DP-TY----NYAYLNRGIALYYGGRYELAQDDLLAFYQDD 162 (296)
T ss_pred -HHHHHHHHHHHHHh-CC-CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33334444444431 11 11 1234578888888999999998888887763
No 84
>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.
Probab=96.27 E-value=0.026 Score=51.27 Aligned_cols=105 Identities=19% Similarity=0.375 Sum_probs=67.0
Q ss_pred chhHHHHHHHHHHHHHhhCCCCCCCCcc-cccc--CCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHH
Q 014143 257 NQRRIQCLKYLVLANMLMESEVNPFDGQ-EAKP--YKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNY 333 (430)
Q Consensus 257 ~~~~~~~lky~~l~~lL~~~~~~~~~~~-~~~~--~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~ 333 (430)
.+....+..|.+|..+..+. ...|... ...+ ...+|.+.....+..++.++++..|-+..+. ...|.+..+
T Consensus 95 ~~~~~ef~~y~lL~~l~~~~-~~~~~~~l~~l~~~~~~~~~i~~al~l~~a~~~gny~~ff~l~~~-----~~~~~l~~~ 168 (204)
T PF03399_consen 95 SPNEAEFIAYYLLYLLCQNN-IPDFHMELELLPSEILSSPYIQFALELCRALMEGNYVRFFRLYRS-----KSAPYLFAC 168 (204)
T ss_dssp -TTHHHHHHHHHHHTT-T----THHHHHHTTS-HHHHTSHHHHHHHHHHHHH--TTHHHHHHHHT------TTS-HHHHH
T ss_pred CCCHHHHHHHHHHHHHHccc-chHHHHHHHHCchhhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhc-----cCCChHHHH
Confidence 34666777888887654331 1112111 0111 2346777777789999999999999987622 234555555
Q ss_pred H-HHHHHHHHHHHHHHhcccccc-cchhhHHhHhCC
Q 014143 334 I-EDLLKNVRTQVLLKLIKPYTR-IRIPFISKELNV 367 (430)
Q Consensus 334 ~-~~L~~~i~~~~l~~i~~~Y~~-I~l~~lA~~l~l 367 (430)
+ ..+...+|.+++..+.+.|.. |+++.+++.|++
T Consensus 169 l~~~~~~~iR~~al~~i~~ay~~~i~l~~l~~~L~F 204 (204)
T PF03399_consen 169 LMERFFNRIRLRALQSISKAYRSSIPLSFLAELLGF 204 (204)
T ss_dssp HHGGGHHHHHHHHHHHHHHHS-T-EEHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHcCC
Confidence 4 448899999999999999999 999999999874
No 85
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.24 E-value=0.62 Score=42.19 Aligned_cols=114 Identities=14% Similarity=0.151 Sum_probs=78.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHH-HHhhcC--HHHHHHHHHHHHhhhccCC
Q 014143 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM-YTETKN--NKKLKQLYQKALAIKSAIP 216 (430)
Q Consensus 140 ~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l-~~~~~d--~~ka~~~l~~a~~~~~~~~ 216 (430)
..||.+|...|++++|...+......-.+ ..+++...+.+ +...|+ ..+|...++++.+....
T Consensus 77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~------------~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-- 142 (198)
T PRK10370 77 ALLGEYYLWRNDYDNALLAYRQALQLRGE------------NAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-- 142 (198)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC--
Confidence 47899999999999999999988887421 23555565664 456666 59999999998765322
Q ss_pred CchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHh
Q 014143 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANML 273 (430)
Q Consensus 217 ~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~l~~lL 273 (430)
++ ......|..++..|+|.+|..+|..+.+.... ++ .+..++.-+--+.+|
T Consensus 143 ~~----~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~-~~-~r~~~i~~i~~a~~~ 193 (198)
T PRK10370 143 EV----TALMLLASDAFMQADYAQAIELWQKVLDLNSP-RV-NRTQLVESINMAKLL 193 (198)
T ss_pred Ch----hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Cc-cHHHHHHHHHHHHHH
Confidence 12 23344588889999999999999999764422 22 333333444444444
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.22 E-value=0.077 Score=48.50 Aligned_cols=114 Identities=20% Similarity=0.303 Sum_probs=85.4
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014143 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (430)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~ 216 (430)
+..+.||-=|++.||+..|.+-|.+.... |+ .-...++..+.+|...|+.+.|...|++|.+....
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~--------DP----s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-- 101 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEH--------DP----SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-- 101 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------Cc----ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC--
Confidence 34558999999999999999999998887 31 23567788889999999999999999999876432
Q ss_pred CchhHH-HHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q 014143 217 HPRIMG-IIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANM 272 (430)
Q Consensus 217 ~~~~~~-~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~l~~l 272 (430)
.| .+.-+ |-..+..|.|.+|...|..+.....- +.....+..+++|++
T Consensus 102 ----~GdVLNNY-G~FLC~qg~~~eA~q~F~~Al~~P~Y---~~~s~t~eN~G~Cal 150 (250)
T COG3063 102 ----NGDVLNNY-GAFLCAQGRPEEAMQQFERALADPAY---GEPSDTLENLGLCAL 150 (250)
T ss_pred ----ccchhhhh-hHHHHhCCChHHHHHHHHHHHhCCCC---CCcchhhhhhHHHHh
Confidence 22 22334 44455778999999999999764432 122345678899997
No 87
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.17 E-value=1.3 Score=49.66 Aligned_cols=225 Identities=11% Similarity=0.053 Sum_probs=122.6
Q ss_pred CCCHHHHHHHHHHhhcCCcc--chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHH-h
Q 014143 29 ETDPEGALAGFAEVVAMEPE--KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR-NYSEKCINNIMDF-V 104 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~--~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k-~~~~k~v~~il~~-~ 104 (430)
.+++++|...+.+.+....+ ...+...++..++.++...|+++++.+++...+...+..-.. ......+...+.. .
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 45677777777777654321 222334566777888888888888888888777765221100 0001111111111 1
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcc----------
Q 014143 105 SGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDD---------- 174 (430)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d---------- 174 (430)
-. .+ +.+.....+...++..+... ..........++.++...|++++|...+.+.............
T Consensus 584 ~~-~G-~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 584 WE-WA-RLDEAEQCARKGLEVLSNYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HH-hc-CHHHHHHHHHHhHHhhhccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 11 11 12233334444433322111 1122234446888888999999888777776543211100000
Q ss_pred -----------------------hhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHh
Q 014143 175 -----------------------QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKM 231 (430)
Q Consensus 175 -----------------------~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~ 231 (430)
..............++++...|++.+|...+.++.........+...+......|..
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 000000111234556677788888888888888866544444444455566677888
Q ss_pred hhhhhcHHHHHHHHHHHHHhhhhhc
Q 014143 232 HMAERQWADAATDFFEAFKNYDEAG 256 (430)
Q Consensus 232 ~~~~~~y~~A~~~f~ea~~~~~~~~ 256 (430)
+...|++.+|...|.++.+.+...+
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHhCccc
Confidence 8888888888888888877654433
No 88
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.11 E-value=0.057 Score=40.55 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCch-hHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 181 LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR-IMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 181 ~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
...++...+.++...|++.+|..+++++..+.....+.. ..+......|.++...|+|.+|..+|-++++-+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 456777788999999999999999999988855555432 246667777999999999999999999997654
No 89
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=1.1 Score=41.18 Aligned_cols=245 Identities=14% Similarity=0.217 Sum_probs=130.0
Q ss_pred CHHHHHHHHHHhhcCCccchhh--hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 31 DPEGALAGFAEVVAMEPEKAEW--GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~--~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++|.++|.+--+.-.=.-.| .-.+.-+++.++.+.|.-+++...|..--+-+ ..+.+.....++...++.+...
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~- 106 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDM- 106 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhh-
Confidence 3667777776653322200122 34566777888888888888888887777777 4456666666666666665531
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHh-ccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDM-GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~-g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~ 187 (430)
+ .| ++-.+-..-+|++|+.. .++.+|...++..-........ .+.--..++-
T Consensus 107 G-------rf--------------~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees------~ssANKC~lK 159 (288)
T KOG1586|consen 107 G-------RF--------------TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES------VSSANKCLLK 159 (288)
T ss_pred h-------HH--------------HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh------hhhHHHHHHH
Confidence 1 00 00012234778888855 7777777777766665443211 0111223334
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcch-hHHHHH-H
Q 014143 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ-RRIQCL-K 265 (430)
Q Consensus 188 ~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~-~~~~~l-k 265 (430)
-+.+...+++|.+|-..|.+.-.. +..+|.++ + .|..||+.+--..-...++ ....+| +
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~--s~~n~LLK-----y------------s~KdyflkAgLChl~~~D~v~a~~ALek 220 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARS--SLDNNLLK-----Y------------SAKDYFLKAGLCHLCKADEVNAQRALEK 220 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hccchHHH-----h------------HHHHHHHHHHHHhHhcccHHHHHHHHHH
Confidence 445555667777777766654211 11112111 0 0112333331111000110 111111 1
Q ss_pred HHHHHHHhhCCCCCCCCccccccCCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHH
Q 014143 266 YLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLK 339 (430)
Q Consensus 266 y~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~ 339 (430)
| .+.+| .|.+.++...++.|+.+....|...|.+....|...-..|...-.++-.+.+
T Consensus 221 y---------~~~dP-------~F~dsREckflk~L~~aieE~d~e~fte~vkefDsisrLD~W~ttiLlkiK~ 278 (288)
T KOG1586|consen 221 Y---------QELDP-------AFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSISRLDQWKTTILLKIKK 278 (288)
T ss_pred H---------HhcCC-------cccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 1 01122 1445578889999999999999999999998887655555554444433333
No 90
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.08 E-value=0.28 Score=54.05 Aligned_cols=162 Identities=9% Similarity=-0.004 Sum_probs=101.5
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh----------hhhhHHHHHH
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV----------TRNYSEKCIN 98 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~----------~k~~~~k~v~ 98 (430)
.+++++|+..|.+++..++....-.......++..+.+.|+++++.+++..+.... +.- +.........
T Consensus 285 ~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~-P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 285 LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS-PPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC-CceEeecCCCCCCCCchHHHHHH
Confidence 45689999999999876653311113455667778899999999999999888753 210 0001111111
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhc
Q 014143 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (430)
Q Consensus 99 ~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~ 178 (430)
.....+....+ .+.....++.++. .... .. .+...+|.++...|++++|.+.+.+....-+ ++
T Consensus 364 ~~a~~l~~~g~--~~eA~~~l~~al~---~~P~-n~--~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P-----d~---- 426 (765)
T PRK10049 364 LLSQVAKYSND--LPQAEMRARELAY---NAPG-NQ--GLRIDYASVLQARGWPRAAENELKKAEVLEP-----RN---- 426 (765)
T ss_pred HHHHHHHHcCC--HHHHHHHHHHHHH---hCCC-CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-----CC----
Confidence 11112211111 2233333333322 1211 12 3455899999999999999999999988742 12
Q ss_pred chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 179 ~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
.+++...+..+...+++.+|...++.+.+.
T Consensus 427 ---~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 427 ---INLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred ---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 245556667889999999999999887654
No 91
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.00 E-value=1.1 Score=44.24 Aligned_cols=185 Identities=14% Similarity=0.241 Sum_probs=111.0
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHH----HHHHHHh
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI----NNIMDFV 104 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v----~~il~~~ 104 (430)
+.|+..|.....+..+..+.. .+++.-..++|.+.|+|..+..++.++.+- +..+....+..= +.+++..
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~----~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka--~~l~~~e~~~le~~a~~glL~q~ 239 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRH----PEVLRLALRAYIRLGAWQALLAILPKLRKA--GLLSDEEAARLEQQAWEGLLQQA 239 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHc--cCCChHHHHHHHHHHHHHHHHHH
Confidence 345667777666666665532 466677788999999999999999888875 334443333332 2333333
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHH
Q 014143 105 SGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (430)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~ 184 (430)
.+-.+ .+-+..+-+..-. ..|.-..+..-+|.-+.+.|+.++|.+++.+..+... |+ . +..+
T Consensus 240 ~~~~~--~~gL~~~W~~~pr------~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~-----D~----~-L~~~ 301 (400)
T COG3071 240 RDDNG--SEGLKTWWKNQPR------KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW-----DP----R-LCRL 301 (400)
T ss_pred hcccc--chHHHHHHHhccH------HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc-----Ch----h-HHHH
Confidence 32111 1111121111111 1112224455778888999999999999999888754 22 2 1111
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC-CchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHH
Q 014143 185 YAIEIQMYTETKNNKKLKQLYQKALAIKSAIP-HPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (430)
Q Consensus 185 ~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (430)
-=+...+|..+.....++..+- .+ +| .+...-|.++..++.|.+|..+|-.+.
T Consensus 302 -----~~~l~~~d~~~l~k~~e~~l~~---h~~~p----~L~~tLG~L~~k~~~w~kA~~~leaAl 355 (400)
T COG3071 302 -----IPRLRPGDPEPLIKAAEKWLKQ---HPEDP----LLLSTLGRLALKNKLWGKASEALEAAL 355 (400)
T ss_pred -----HhhcCCCCchHHHHHHHHHHHh---CCCCh----hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1134556777666655555432 22 24 566667888999999999999998885
No 92
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.00 E-value=1.1 Score=48.96 Aligned_cols=99 Identities=19% Similarity=0.287 Sum_probs=71.1
Q ss_pred hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 014143 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (430)
Q Consensus 134 l~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~ 213 (430)
+-+.+.++||.+.+..+++..|.+.+.++.++.+ ..++-|+....+....++...|...++.+..+.+
T Consensus 494 ~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp------------~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~ 561 (1018)
T KOG2002|consen 494 TNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP------------GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS 561 (1018)
T ss_pred chhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc------------hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc
Confidence 4456678999999999999999999999999853 1344554444344456788999999988887665
Q ss_pred cCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 214 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 214 ~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
..++ .+..-|-+|+...+|.-|-..|--.+.
T Consensus 562 ~np~------arsl~G~~~l~k~~~~~a~k~f~~i~~ 592 (1018)
T KOG2002|consen 562 SNPN------ARSLLGNLHLKKSEWKPAKKKFETILK 592 (1018)
T ss_pred CCcH------HHHHHHHHHHhhhhhcccccHHHHHHh
Confidence 5432 334457777777788877776666653
No 93
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.99 E-value=0.027 Score=40.76 Aligned_cols=52 Identities=23% Similarity=0.437 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
.+++++|++.|+.+++..|++ ..+...++.++..+|+++++.+.|...++..
T Consensus 10 ~g~~~~A~~~~~~~l~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQDPDN----PEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp CTHHHHHHHHHHHHHCCSTTH----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 457999999999999988753 6788999999999999999999999998764
No 94
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.98 E-value=0.18 Score=49.89 Aligned_cols=119 Identities=12% Similarity=0.081 Sum_probs=70.8
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCC
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (430)
+.+|...-++.|+..+.-..++...-.-++.|++..|+-.+||++++++-+.=+..-+..-.+..-+|+.-++...+.-.
T Consensus 29 k~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~ 108 (639)
T KOG1130|consen 29 KMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVK 108 (639)
T ss_pred hccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhh
Confidence 45678999999999988766654444567788999999999999999876655544322223333344433333222210
Q ss_pred --CCCChhHHHHHHHHHHHHHHHhhhhhh-HHHHhHHHHHHHHHhcc
Q 014143 108 --ASQNFSLLREFYQTTLKALEEAKNERL-WFKTNLKLCKIWFDMGE 151 (430)
Q Consensus 108 --~~~~~~~~~~~~~~~~e~l~~~~~~kl-~~r~~~~La~~~~~~g~ 151 (430)
=+...-.....++.+++. .+|+ --|..++||.+|...|+
T Consensus 109 G~fdeA~~cc~rhLd~areL-----gDrv~e~RAlYNlgnvYhakGk 150 (639)
T KOG1130|consen 109 GAFDEALTCCFRHLDFAREL-----GDRVLESRALYNLGNVYHAKGK 150 (639)
T ss_pred cccchHHHHHHHHhHHHHHH-----hHHHhhhHHHhhhhhhhhhccc
Confidence 011111223333444332 2232 22667899999998875
No 95
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.98 E-value=0.014 Score=42.53 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
..+++++|++.|++++..+|++ ..+...++.+|.+.|+++++.+.+..++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDN----PEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4578999999999999998865 4566689999999999999999999888764
No 96
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.36 Score=46.53 Aligned_cols=88 Identities=7% Similarity=0.121 Sum_probs=67.6
Q ss_pred HHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC--CchhHHHH
Q 014143 147 FDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP--HPRIMGII 224 (430)
Q Consensus 147 ~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~--~~~~~~~~ 224 (430)
.+.+|.++|.+++.++...+... ++ +...+-+...++++++..||...++..++..++..+... +|.+.+.+
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~---~e---~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEY---KE---PDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhh---cc---chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 34568899999999999887543 12 134667778889999999999999999999988777665 36688888
Q ss_pred HHhhhHhhhhhhcHHH
Q 014143 225 RECGGKMHMAERQWAD 240 (430)
Q Consensus 225 ~~~~g~~~~~~~~y~~ 240 (430)
|..+..+|-..+||..
T Consensus 160 Y~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHHHHHhHHH
Confidence 8887777766665554
No 97
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.90 E-value=1.4 Score=41.37 Aligned_cols=166 Identities=7% Similarity=0.090 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhh
Q 014143 52 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 131 (430)
Q Consensus 52 ~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ 131 (430)
|....+-..+.-+.+.|+|+++.+.+..+.... |+... . .
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----------------------P~s~~--a-----------~---- 69 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----------------------PFGPY--S-----------Q---- 69 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------------CCChH--H-----------H----
Confidence 345666677888889999999999998887764 33110 0 0
Q ss_pred hhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHH-------------HhhcCH
Q 014143 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMY-------------TETKNN 198 (430)
Q Consensus 132 ~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~-------------~~~~d~ 198 (430)
...+.+|..|+..|+|++|...+++..+.-++.+..++ +.+..-.+... ...+|.
T Consensus 70 -----~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~-------a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~ 137 (243)
T PRK10866 70 -----QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY-------VLYMRGLTNMALDDSALQGFFGVDRSDRDP 137 (243)
T ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH-------HHHHHHHhhhhcchhhhhhccCCCccccCH
Confidence 12458999999999999999999999888655432211 11111111111 122356
Q ss_pred HHHHHHHHHHHhhhccCCC----chh----------HHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcchhHHHHH
Q 014143 199 KKLKQLYQKALAIKSAIPH----PRI----------MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL 264 (430)
Q Consensus 199 ~ka~~~l~~a~~~~~~~~~----~~~----------~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l 264 (430)
..++.++..-..+....|+ |.. .+..-..-|+++...++|..|..-|-...+.|... +...++|
T Consensus 138 ~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t--~~~~eal 215 (243)
T PRK10866 138 QHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDT--QATRDAL 215 (243)
T ss_pred HHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCC--chHHHHH
Confidence 6677666665555555553 211 12223456788888889999998888888888433 3444556
Q ss_pred HHHHHHH
Q 014143 265 KYLVLAN 271 (430)
Q Consensus 265 ky~~l~~ 271 (430)
.+++-+-
T Consensus 216 ~~l~~ay 222 (243)
T PRK10866 216 PLMENAY 222 (243)
T ss_pred HHHHHHH
Confidence 6655544
No 98
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.86 E-value=0.27 Score=53.51 Aligned_cols=181 Identities=11% Similarity=0.034 Sum_probs=84.5
Q ss_pred CCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCC
Q 014143 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (430)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (430)
+++++|.+.|.+..+.+ ..++..++..|.+.|+++++++++..+... + +.+. ......++..+.....
T Consensus 374 G~~~~A~~vf~~m~~~d-------~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~--g-~~Pd--~~T~~~ll~a~~~~g~ 441 (697)
T PLN03081 374 GRMEDARNVFDRMPRKN-------LISWNALIAGYGNHGRGTKAVEMFERMIAE--G-VAPN--HVTFLAVLSACRYSGL 441 (697)
T ss_pred CCHHHHHHHHHhCCCCC-------eeeHHHHHHHHHHcCCHHHHHHHHHHHHHh--C-CCCC--HHHHHHHHHHHhcCCc
Confidence 44556666665553211 223455666666666666666666666542 1 2222 2224445555544221
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHH
Q 014143 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (430)
Q Consensus 110 ~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~ 189 (430)
.+...++++...+. . .-.-......-+.+.+...|++++|.+++.+.... + + ..++-..+
T Consensus 442 --~~~a~~~f~~m~~~---~-g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~---p----~-------~~~~~~Ll 501 (697)
T PLN03081 442 --SEQGWEIFQSMSEN---H-RIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK---P----T-------VNMWAALL 501 (697)
T ss_pred --HHHHHHHHHHHHHh---c-CCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCC---C----C-------HHHHHHHH
Confidence 22222222222110 0 00000012335667777777777777776543111 0 1 12334444
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHH
Q 014143 190 QMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (430)
Q Consensus 190 ~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea 248 (430)
..|...|++..|+.+.++.... +|.-.+ .+.+.+.++...|+|.+|.+.+-+.
T Consensus 502 ~a~~~~g~~~~a~~~~~~l~~~-----~p~~~~-~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 502 TACRIHKNLELGRLAAEKLYGM-----GPEKLN-NYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred HHHHHcCCcHHHHHHHHHHhCC-----CCCCCc-chHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5666777777777765554322 121111 1222344555666777766655543
No 99
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=1.6 Score=40.74 Aligned_cols=194 Identities=13% Similarity=0.098 Sum_probs=125.3
Q ss_pred cccCCCCHHHHHHHHHHhhcCCcc--chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 014143 25 KGLVETDPEGALAGFAEVVAMEPE--KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD 102 (430)
Q Consensus 25 k~~~~~~~~~Ai~~~~~ii~~~~~--~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~ 102 (430)
+.....++++-++.+.++++..+. -++...-.++|..-...+.|+.+.+..+++.|...| |. ..++.++---.++
T Consensus 21 r~~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~--S~RV~~lkam~lE 97 (289)
T KOG3060|consen 21 REETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PG--SKRVGKLKAMLLE 97 (289)
T ss_pred HhccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CC--ChhHHHHHHHHHH
Confidence 455667899999999999875542 233356889999999999999999999999999988 53 2333333333343
Q ss_pred HhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHH
Q 014143 103 FVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL 182 (430)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~ 182 (430)
.... .+-..+.|+-.++- +.--.+ +..|-.-+....|+-.+|.+-+.+..+.+.. | -
T Consensus 98 a~~~-----~~~A~e~y~~lL~d-----dpt~~v-~~KRKlAilka~GK~l~aIk~ln~YL~~F~~-----D-------~ 154 (289)
T KOG3060|consen 98 ATGN-----YKEAIEYYESLLED-----DPTDTV-IRKRKLAILKAQGKNLEAIKELNEYLDKFMN-----D-------Q 154 (289)
T ss_pred Hhhc-----hhhHHHHHHHHhcc-----CcchhH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC-----c-------H
Confidence 3322 22345566655541 111111 1123444555678777888877777777652 3 2
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHH---HHH-HhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMG---IIR-ECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 183 e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~---~~~-~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
|.....+.+|+..+++.+|--+|+...=+++. .|.+.+ .++ ..+| ..|+..|.+||-.+.+.
T Consensus 155 EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~--n~l~f~rlae~~Yt~gg-----~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 155 EAWHELAEIYLSEGDFEKAAFCLEELLLIQPF--NPLYFQRLAEVLYTQGG-----AENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHh
Confidence 56667788999999999999999876533211 244433 223 3333 45788888888888764
No 100
>PLN03077 Protein ECB2; Provisional
Probab=95.84 E-value=4.1 Score=45.50 Aligned_cols=109 Identities=11% Similarity=0.175 Sum_probs=65.9
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCch
Q 014143 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (430)
Q Consensus 140 ~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~ 219 (430)
..|...|.+.|++++|.+++.+. . . | +..+-..+..|...|+..+|..++++-... .-.|+..
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~--~---~----d-------~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-g~~Pd~~ 590 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH--E---K----D-------VVSWNILLTGYVAHGKGSMAVELFNRMVES-GVNPDEV 590 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc--C---C----C-------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCcc
Confidence 35778899999999998887765 1 1 2 123344556788889999999988875431 1122211
Q ss_pred -hHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhC
Q 014143 220 -IMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLME 275 (430)
Q Consensus 220 -~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~l~~lL~~ 275 (430)
..+.+ ..+.+.|++.+|..+|.+..+.+....+ ...|.++..++.+
T Consensus 591 T~~~ll-----~a~~~~g~v~ea~~~f~~M~~~~gi~P~-----~~~y~~lv~~l~r 637 (857)
T PLN03077 591 TFISLL-----CACSRSGMVTQGLEYFHSMEEKYSITPN-----LKHYACVVDLLGR 637 (857)
T ss_pred cHHHHH-----HHHhhcChHHHHHHHHHHHHHHhCCCCc-----hHHHHHHHHHHHh
Confidence 12222 1245678888888888877544432222 2346666666654
No 101
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=95.83 E-value=1.7 Score=41.10 Aligned_cols=49 Identities=16% Similarity=0.395 Sum_probs=36.2
Q ss_pred CCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHH
Q 014143 291 NDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLK 339 (430)
Q Consensus 291 ~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~ 339 (430)
..|.+..+.-|+.+...++...|..+.+.|++.+..||.+...++.+-+
T Consensus 188 ~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~ 236 (260)
T PF04190_consen 188 SYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKIGQ 236 (260)
T ss_dssp S-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHHHH
Confidence 3477778888999999999999999999999999999887766655433
No 102
>KOG1861 consensus Leucine permease transcriptional regulator [Transcription]
Probab=95.80 E-value=0.062 Score=53.61 Aligned_cols=141 Identities=15% Similarity=0.205 Sum_probs=99.8
Q ss_pred HHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCCCCC--CccccccCCCCcchHHHH
Q 014143 222 GIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPF--DGQEAKPYKNDPEILAMT 299 (430)
Q Consensus 222 ~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~l~~lL~~~~~~~~--~~~~~~~~~~~~~~~~l~ 299 (430)
..+|+..+++.++.||..+=-++--..+.-|.+.......+..-|-+|+-|++.+..+.. -..+....+.+|.+.--.
T Consensus 348 veVYEtHARIALEkGD~~EfNQCQtQLk~LY~egipg~~~EF~AYriLY~i~tkN~~di~sll~~lt~E~ked~~V~hAL 427 (540)
T KOG1861|consen 348 VEVYETHARIALEKGDLEEFNQCQTQLKALYSEGIPGAYLEFTAYRILYYIFTKNYPDILSLLRDLTEEDKEDEAVAHAL 427 (540)
T ss_pred eeeehhhhHHHHhcCCHHHHHHHHHHHHHHHccCCCCchhhHHHHHHHHHHHhcCchHHHHHHHhccHhhccCHHHHHHH
Confidence 445777888888888888777777666667755444457778889999999875433211 111122223345555556
Q ss_pred HHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHH-HHHHHHHHHHHHHHHhccccc-ccchhhHHhHhCCCh
Q 014143 300 NLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNY-IEDLLKNVRTQVLLKLIKPYT-RIRIPFISKELNVPE 369 (430)
Q Consensus 300 ~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~-~~~L~~~i~~~~l~~i~~~Y~-~I~l~~lA~~l~l~~ 369 (430)
.+..|...+++..|...- ..-|-+..| ++.+.++-|..++..+++.|+ +|++++|++.|.+..
T Consensus 428 ~vR~A~~~GNY~kFFrLY-------~~AP~M~~yLmdlF~erER~~Al~ii~KsyrP~i~~~fi~~~laf~~ 492 (540)
T KOG1861|consen 428 EVRSAVTLGNYHKFFRLY-------LTAPNMSGYLMDLFLERERKKALTIICKSYRPTITVDFIASELAFDS 492 (540)
T ss_pred HHHHHHHhccHHHHHHHH-------hhcccchhHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHhhhhhhch
Confidence 788899999999998743 223444444 466789999999999999999 999999999888753
No 103
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.77 E-value=0.071 Score=38.45 Aligned_cols=60 Identities=13% Similarity=0.246 Sum_probs=49.1
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 140 ~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
+.+|..+++.|+|++|.+.++.+...-. .-.+.+....+++...|++.+|..+++++...
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDP------------DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCST------------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3678999999999999999999988732 24577778888999999999999999888654
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.76 E-value=0.85 Score=46.96 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=66.8
Q ss_pred HHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhhhcc
Q 014143 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK-NNKKLKQLYQKALAIKSA 214 (430)
Q Consensus 136 ~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~-d~~ka~~~l~~a~~~~~~ 214 (430)
-.+..-||-+|.-.|+|+.|.+.++-....-. .| -.+|--+-. .++-+ ....|-.+|++|..+...
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~P-----nd----~~lWNRLGA----tLAN~~~s~EAIsAY~rALqLqP~ 496 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKP-----ND----YLLWNRLGA----TLANGNRSEEAISAYNRALQLQPG 496 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCC-----ch----HHHHHHhhH----HhcCCcccHHHHHHHHHHHhcCCC
Confidence 35666899999999999999999887766522 12 122322111 22333 367899999999866433
Q ss_pred CCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 215 ~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
-+.+++.+ |+.++..|.|++|.++|++++.
T Consensus 497 ----yVR~RyNl--gIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 497 ----YVRVRYNL--GISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred ----eeeeehhh--hhhhhhhhhHHHHHHHHHHHHH
Confidence 23344444 8999999999999999999974
No 105
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.99 Score=45.43 Aligned_cols=195 Identities=13% Similarity=0.181 Sum_probs=130.5
Q ss_pred HHHHhhcccCCCCHHHHHHHHHHhhcCCcc-chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 014143 19 LCSILEKGLVETDPEGALAGFAEVVAMEPE-KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI 97 (430)
Q Consensus 19 ~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~-~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v 97 (430)
--||..+ ++-++|+..|+..++.+|. ...| .-+|.=|...++...+++.|+.-+..- |.--+ .==.+
T Consensus 337 aNYYSlr----~eHEKAv~YFkRALkLNp~~~~aW-----TLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyR--AWYGL 404 (559)
T KOG1155|consen 337 ANYYSLR----SEHEKAVMYFKRALKLNPKYLSAW-----TLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYR--AWYGL 404 (559)
T ss_pred hhHHHHH----HhHHHHHHHHHHHHhcCcchhHHH-----HHhhHHHHHhcccHHHHHHHHHHHhcC-chhHH--HHhhh
Confidence 3466654 4568999999999999884 4556 558889999999999999999888764 32111 11112
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhh
Q 014143 98 NNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKK 177 (430)
Q Consensus 98 ~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~ 177 (430)
-+.-+.+. .| ....-++..+.++ ++ ++.|+|+ -||+.|.+.++.++|.+.+...-...+. +
T Consensus 405 GQaYeim~-Mh----~YaLyYfqkA~~~-kP-nDsRlw~----aLG~CY~kl~~~~eAiKCykrai~~~dt-----e--- 465 (559)
T KOG1155|consen 405 GQAYEIMK-MH----FYALYYFQKALEL-KP-NDSRLWV----ALGECYEKLNRLEEAIKCYKRAILLGDT-----E--- 465 (559)
T ss_pred hHHHHHhc-ch----HHHHHHHHHHHhc-CC-CchHHHH----HHHHHHHHhccHHHHHHHHHHHHhcccc-----c---
Confidence 22222222 12 1334455555442 22 3556663 6799999999999999999988777421 1
Q ss_pred cchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC--CCc-hhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 178 GSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI--PHP-RIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 178 ~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~--~~~-~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
-..+...+++|-.++|..+|..+|.+........ -+| -+.+++.+ +..+...+||.+|..|--.+..
T Consensus 466 ----~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fL--A~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 466 ----GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFL--AEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred ----hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH--HHHHHhhcchHHHHHHHHHHhc
Confidence 1344556789999999999999999886543222 234 34556554 6777788899998877766654
No 106
>PRK12370 invasion protein regulator; Provisional
Probab=95.73 E-value=0.65 Score=49.07 Aligned_cols=120 Identities=9% Similarity=-0.064 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|++.++.+|++ ..++..++.++...|+++++.+.+...+..- +.-....... ..-.+.. .
T Consensus 351 ~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~----~~~~~~~-g 420 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLSPIS----ADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITK----LWITYYH-T 420 (553)
T ss_pred ccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHH----HHHHHhc-c
Confidence 567899999999999998865 3467888999999999999999999998875 4321111111 1111111 1
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~ 165 (430)
. .+.....+..+++ ....+.. .....+|.++...|++++|...+.++...
T Consensus 421 ~--~eeA~~~~~~~l~---~~~p~~~--~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 421 G--IDDAIRLGDELRS---QHLQDNP--ILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred C--HHHHHHHHHHHHH---hccccCH--HHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 1 1122222222221 1100011 12346777777888888888877776544
No 107
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.71 E-value=0.41 Score=39.81 Aligned_cols=110 Identities=13% Similarity=0.149 Sum_probs=71.0
Q ss_pred HHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHH
Q 014143 38 GFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLRE 117 (430)
Q Consensus 38 ~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~ 117 (430)
.|+.++..+|++ ..+...++..+.+.|+++++.+.++.+.+.. |+ +.
T Consensus 5 ~~~~~l~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------------------p~-~~----- 51 (135)
T TIGR02552 5 TLKDLLGLDSEQ----LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-----------------------PY-NS----- 51 (135)
T ss_pred hHHHHHcCChhh----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-----------------------CC-cH-----
Confidence 455666665543 3446677888888888888888876665542 22 00
Q ss_pred HHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcC
Q 014143 118 FYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN 197 (430)
Q Consensus 118 ~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d 197 (430)
.....+|.++...|++++|.+.+........+ ..+.+...+.++...|+
T Consensus 52 -------------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~------------~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 52 -------------------RYWLGLAACCQMLKEYEEAIDAYALAAALDPD------------DPRPYFHAAECLLALGE 100 (135)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------ChHHHHHHHHHHHHcCC
Confidence 01236777788888888888888777665211 23445555667777888
Q ss_pred HHHHHHHHHHHHhh
Q 014143 198 NKKLKQLYQKALAI 211 (430)
Q Consensus 198 ~~ka~~~l~~a~~~ 211 (430)
+.+|...++.+...
T Consensus 101 ~~~A~~~~~~al~~ 114 (135)
T TIGR02552 101 PESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888777654
No 108
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.66 E-value=0.19 Score=41.85 Aligned_cols=96 Identities=14% Similarity=-0.003 Sum_probs=72.3
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
...+|..+...|++++|...++.+....+ + -.+.+...+..+...|++.+|..+++.+.... |
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-----~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----p 82 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDP-----Y-------NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-----P 82 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCC-----C-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----C
Confidence 45889999999999999999988877622 1 13455566788889999999999999886543 2
Q ss_pred hhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 219 ~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
. ....+...|.++...|++..|...|-.+.+..
T Consensus 83 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 83 D-DPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2 12233445788889999999999998887643
No 109
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.65 E-value=0.43 Score=46.11 Aligned_cols=186 Identities=12% Similarity=0.040 Sum_probs=102.4
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.++.++|+..|.+.++.+|++ ..++..++.++...|+++++.+.+...+..- +..... ..+....+-...
T Consensus 77 ~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a-----~~~lg~~l~~~g 146 (296)
T PRK11189 77 LGLRALARNDFSQALALRPDM----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYA-----YLNRGIALYYGG 146 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH-----HHHHHHHHHHCC
Confidence 467899999999999998764 5678899999999999999999999998864 432221 122222111111
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
+.+.....++..++ -..+... +. -...+....+++++|...+.+....... + ...+ ..
T Consensus 147 --~~~eA~~~~~~al~---~~P~~~~--~~--~~~~l~~~~~~~~~A~~~l~~~~~~~~~-----~----~~~~----~~ 204 (296)
T PRK11189 147 --RYELAQDDLLAFYQ---DDPNDPY--RA--LWLYLAESKLDPKQAKENLKQRYEKLDK-----E----QWGW----NI 204 (296)
T ss_pred --CHHHHHHHHHHHHH---hCCCCHH--HH--HHHHHHHccCCHHHHHHHHHHHHhhCCc-----c----ccHH----HH
Confidence 13334444444433 1222110 10 1112334567889998888664433211 1 0001 11
Q ss_pred HHHHHhhcC----HHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 189 IQMYTETKN----NKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 189 ~~l~~~~~d----~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
..+++...+ +..+...++.+...... ....+...|.++...|++.+|..+|-.+...-
T Consensus 205 ~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~------~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 205 VEFYLGKISEETLMERLKAGATDNTELAER------LCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHccCCCHHHHHHHHHhcCCCcHHHHHH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 111111111 12222222222222222 12245566888889999999999999987654
No 110
>PRK14574 hmsH outer membrane protein; Provisional
Probab=95.64 E-value=2 Score=47.52 Aligned_cols=163 Identities=8% Similarity=0.000 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHH
Q 014143 57 LKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF 136 (430)
Q Consensus 57 l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~ 136 (430)
-..-+.+.+++|+++.+++.+.+.++.- +. +...+.. ++..+..... .+.....++.+. . ..-.+.
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~-~~~av~d----ll~l~~~~G~--~~~A~~~~eka~---~---p~n~~~ 102 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKAG-PL-QSGQVDD----WLQIAGWAGR--DQEVIDVYERYQ---S---SMNISS 102 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhC-cc-chhhHHH----HHHHHHHcCC--cHHHHHHHHHhc---c---CCCCCH
Confidence 3444667788899999999888888764 43 2222222 2222211111 222233333332 1 112333
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014143 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (430)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~ 216 (430)
....-+|.++...|+|++|.++++++...-++ + .+++...+.++...++..+|...+.++.+.
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-----n-------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~----- 165 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSSLKKDPT-----N-------PDLISGMIMTQADAGRGGVVLKQATELAER----- 165 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----C-------HHHHHHHHHHHhhcCCHHHHHHHHHHhccc-----
Confidence 44456788999999999999999999888432 1 233344477888889999998887776543
Q ss_pred CchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 217 ~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
+|... .+...+-++...+++.+|...|-++++..
T Consensus 166 dp~~~--~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 166 DPTVQ--NYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred CcchH--HHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 23211 11111222222455655888888877643
No 111
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.59 E-value=0.52 Score=47.73 Aligned_cols=65 Identities=15% Similarity=0.264 Sum_probs=34.3
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014143 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (430)
Q Consensus 141 ~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~ 216 (430)
-+|.+++..|+|++|.+.++........+ + -+.+..-+.++...|+..+|+.+++++.....+++
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p----~-------~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~ 404 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQL----D-------ANDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQ 404 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCC----C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence 56666666666666666666433322111 1 01222335566666666666666666654444433
No 112
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.57 E-value=2.6 Score=41.29 Aligned_cols=217 Identities=10% Similarity=0.045 Sum_probs=110.3
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.+.+.++..+++ .-+...++.++...|+++++.+++...++.. +. .........-.+...+.. .
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~----~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~-~~-~~~~~~~~~~~la~~~~~-~ 199 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDD----AWAVHAVAHVLEMQGRFKEGIAFMESWRDTW-DC-SSMLRGHNWWHLALFYLE-R 199 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc-CC-CcchhHHHHHHHHHHHHH-C
Confidence 455777888888887776654 3345667788888888888888887777654 21 110000000011111111 1
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHH-hH-HHHHHHHHhccHHHHHHH--HHHHHhhccCCCCCcchhhcchHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKT-NL-KLCKIWFDMGEYGRMSKI--LKELHKSCQREDGTDDQKKGSQLLEV 184 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~-~~-~La~~~~~~g~~~~A~~~--l~el~~~~~~~~~~~d~~~~~~~~e~ 184 (430)
+ +.+.....++..... .. ....+... .. .+...+...|....+... +........ ++ . .....+
T Consensus 200 G-~~~~A~~~~~~~~~~-~~--~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~--~~--~---~~~~~~- 267 (355)
T cd05804 200 G-DYEAALAIYDTHIAP-SA--ESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHF--PD--H---GLAFND- 267 (355)
T ss_pred C-CHHHHHHHHHHHhcc-cc--CCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhc--Cc--c---cchHHH-
Confidence 1 122223333332110 00 00001111 00 112222233332222222 222211110 00 0 011122
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhhhcc---CCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcch-hH
Q 014143 185 YAIEIQMYTETKNNKKLKQLYQKALAIKSA---IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ-RR 260 (430)
Q Consensus 185 ~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~-~~ 260 (430)
...++.+...|+...|...++........ .........+..+.+..+...|||.+|...+.++.......|-+ ..
T Consensus 268 -~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~aq 346 (355)
T cd05804 268 -LHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSHAQ 346 (355)
T ss_pred -HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 24667788889999999999887655443 11122234567888999999999999999999998877665544 34
Q ss_pred HHHHH
Q 014143 261 IQCLK 265 (430)
Q Consensus 261 ~~~lk 265 (430)
.+++.
T Consensus 347 ~~~~~ 351 (355)
T cd05804 347 RDVFE 351 (355)
T ss_pred HHHHH
Confidence 45443
No 113
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.52 E-value=1.1 Score=48.31 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHH
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAY 77 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~ 77 (430)
..+|+++|.+.+.+||.++|.. ..++.+|+.+|-++||.++.+..-
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~----~~ay~tL~~IyEqrGd~eK~l~~~ 196 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRN----PIAYYTLGEIYEQRGDIEKALNFW 196 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccc----hhhHHHHHHHHHHcccHHHHHHHH
Confidence 4678999999999999988743 567899999999999887776543
No 114
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.51 E-value=1.6 Score=44.22 Aligned_cols=179 Identities=12% Similarity=0.098 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh----hhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhh
Q 014143 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR----NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 130 (430)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k----~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~ 130 (430)
..|++++-+-.-.|++.++++-+....... ...+. .+-+..+.-++..++-+-+. .+... ..+.++++...
T Consensus 324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~-~r~p~~~Llr~~~~~ih~LlGlys~sv~~-~enAe---~hf~~a~k~t~ 398 (629)
T KOG2300|consen 324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWC-TRFPTPLLLRAHEAQIHMLLGLYSHSVNC-YENAE---FHFIEATKLTE 398 (629)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCchHHHHHhHHHHHHHHhhHhhhcch-HHHHH---HHHHHHHHhhh
Confidence 356777777778899999999888887765 33222 34555666666666542221 11111 12222223223
Q ss_pred hhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014143 131 NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (430)
Q Consensus 131 ~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~ 210 (430)
...++.-+..+||-.|+..|+-+...+++..+-..-+.+. .. -.+...++....-..+.++++.+||..+++..+
T Consensus 399 ~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~--ss---q~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 399 SIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSL--SS---QRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcc--hH---HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 3347777888999999999876666566655544421111 11 244566777777788899999999999999988
Q ss_pred hhccCCCchhHHHHHHhhhHhhhhhhcHHHHHH
Q 014143 211 IKSAIPHPRIMGIIRECGGKMHMAERQWADAAT 243 (430)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~ 243 (430)
.+|+..-.++.++.-..-|.+....||-.++..
T Consensus 474 manaed~~rL~a~~LvLLs~v~lslgn~~es~n 506 (629)
T KOG2300|consen 474 MANAEDLNRLTACSLVLLSHVFLSLGNTVESRN 506 (629)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHhcchHHHHh
Confidence 887665567777766666666666665555443
No 115
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.46 E-value=3 Score=43.73 Aligned_cols=123 Identities=15% Similarity=0.209 Sum_probs=86.4
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc---
Q 014143 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA--- 214 (430)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~--- 214 (430)
+..-|++.|-..|+++.|..++...-..|+ -.+|.|+.-+|++...|+++.|-..++.|+.+.++
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdHTP------------TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDHTP------------TLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhccCc------------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence 445788888889999999999988766653 37899999999999999999999888887532211
Q ss_pred --------------------------------CCCchhHHHHH--HhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcch--
Q 014143 215 --------------------------------IPHPRIMGIIR--ECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ-- 258 (430)
Q Consensus 215 --------------------------------~~~~~~~~~~~--~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~-- 258 (430)
+.+-.-+.+.| .-.|..+...++|-.|.+.|.+++..|....+.
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqf 520 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQF 520 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhh
Confidence 00111133443 356888888899999999999998887654322
Q ss_pred -hHHHHHHHHHHHHH
Q 014143 259 -RRIQCLKYLVLANM 272 (430)
Q Consensus 259 -~~~~~lky~~l~~l 272 (430)
.-..|++.+.+++.
T Consensus 521 Dfhtyc~rk~tlrsY 535 (700)
T KOG1156|consen 521 DFHTYCMRKGTLRSY 535 (700)
T ss_pred hHHHHHHhcCcHHHH
Confidence 22345555555544
No 116
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.37 E-value=0.5 Score=37.91 Aligned_cols=103 Identities=15% Similarity=0.231 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhh
Q 014143 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (430)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl 134 (430)
+.+...+..+...|+++++.+.+..++... |+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------------~~~~~---------------------- 37 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----------------------PKSTY---------------------- 37 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----------------------CCccc----------------------
Confidence 566788899999999999999988887643 22000
Q ss_pred HHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 135 ~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
.......+|.++...|++++|...+..+.....+. ......+...+.++...+++..|..+++.+...
T Consensus 38 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 38 APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS---------PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC---------CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 00123578999999999999999999998774321 122345666677888999999999999887543
No 117
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=95.33 E-value=0.029 Score=49.98 Aligned_cols=57 Identities=18% Similarity=0.317 Sum_probs=41.9
Q ss_pred HHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 345 ~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
.+..+++.-..|.+.+||..||++.+++-.-|-.|..+|.|.|.||.....|+++..
T Consensus 103 ~Fi~yIK~~Kvv~ledla~~f~l~t~~~i~ri~~L~~~g~ltGv~DdrGkfIyIs~e 159 (188)
T PF09756_consen 103 EFINYIKEHKVVNLEDLAAEFGLRTQDVINRIQELEAEGRLTGVIDDRGKFIYISEE 159 (188)
T ss_dssp HHHHHHHH-SEE-HHHHHHHH-S-HHHHHHHHHHHHHHSSS-EEE-TT--EEE----
T ss_pred HHHHHHHHcceeeHHHHHHHcCCCHHHHHHHHHHHHHCCCceeeEcCCCCeEEecHH
Confidence 456778888999999999999999999999999999999999999998889988864
No 118
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.32 E-value=2.3 Score=39.18 Aligned_cols=100 Identities=14% Similarity=0.183 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHH--HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHH
Q 014143 112 FSLLREFYQTTLKALEEAKNERLWF--KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (430)
Q Consensus 112 ~~~~~~~~~~~~e~l~~~~~~kl~~--r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~ 189 (430)
.+....-|+..-+..+. ++-... ++.++.|.+--..|+|.+|.+++.++-...- +..-...-+.=|+..+
T Consensus 130 ~ekaI~~YE~Aae~yk~--ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~------~n~LLKys~KdyflkA 201 (288)
T KOG1586|consen 130 FEKAIAHYEQAAEYYKG--EESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL------DNNLLKYSAKDYFLKA 201 (288)
T ss_pred HHHHHHHHHHHHHHHcc--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cchHHHhHHHHHHHHH
Confidence 44455556666554332 222222 7788999999999999999999999987643 2100122244456666
Q ss_pred HHHHhh-cCHHHHHHHHHHHHhhhccCCCch
Q 014143 190 QMYTET-KNNKKLKQLYQKALAIKSAIPHPR 219 (430)
Q Consensus 190 ~l~~~~-~d~~ka~~~l~~a~~~~~~~~~~~ 219 (430)
-+|+.. .|..-++..+.+-....++..+.|
T Consensus 202 gLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 202 GLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 666544 788777777777665544444433
No 119
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.17 E-value=3.4 Score=44.82 Aligned_cols=202 Identities=13% Similarity=0.186 Sum_probs=119.3
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH--------
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINN-------- 99 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~-------- 99 (430)
..++.++|.=.|.+.|..+|++ | +.+..=+.+|-+.|+...+++.+.++..+. |.+.--.....++.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n--~--~~~~ers~L~~~~G~~~~Am~~f~~l~~~~-p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSN--W--ELIYERSSLYQKTGDLKRAMETFLQLLQLD-PPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcc--h--HHHHHHHHHHHHhChHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHHHHHh
Confidence 3567899999999999888754 3 555666788999999999999999998876 53322333333333
Q ss_pred ---------HHHHhcCCCC----CChhH------HHHHHHHHHHHHHHhhh------hhhH-------------------
Q 014143 100 ---------IMDFVSGSAS----QNFSL------LREFYQTTLKALEEAKN------ERLW------------------- 135 (430)
Q Consensus 100 ---------il~~~~~~~~----~~~~~------~~~~~~~~~e~l~~~~~------~kl~------------------- 135 (430)
+-+.++...+ ..... +...++..+.++...++ ..-|
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 3333331111 00111 11122222222211100 0000
Q ss_pred ----HHH-hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014143 136 ----FKT-NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (430)
Q Consensus 136 ----~r~-~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~ 210 (430)
+++ .++++-+.++.++..+++......+... ....+++|+..++.+...|.+..|-.++.....
T Consensus 374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~-----------~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW-----------VSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCC-----------hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 144 4455555555555555543333222221 133578888888888888888888888766532
Q ss_pred hhccCCCchhH-HHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 211 IKSAIPHPRIM-GIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 211 ~~~~~~~~~~~-~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
.|..+ +.+|.-.|..++..+.|++|..+|..+...
T Consensus 443 ------~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 443 ------REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL 478 (895)
T ss_pred ------CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 22222 567778899999999999999999888653
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.16 E-value=0.27 Score=42.06 Aligned_cols=92 Identities=15% Similarity=0.020 Sum_probs=72.6
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchh
Q 014143 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (430)
Q Consensus 141 ~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~ 220 (430)
.+|..+...|++++|...++.+..... ...+.+...+.++...|++..|...|+++......- |
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P------------~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~--~-- 92 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQP------------WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH--P-- 92 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC------------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--c--
Confidence 578899999999999999998876621 235777788889999999999999999997654321 2
Q ss_pred HHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 221 MGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 221 ~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
..+...|..+...|++.+|...|..+..
T Consensus 93 --~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 93 --EPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2334447788889999999999999865
No 121
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.11 E-value=0.89 Score=39.37 Aligned_cols=96 Identities=11% Similarity=0.078 Sum_probs=75.4
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
...+|..+.+.|++++|.++.+-+-.. | ..-.+.+.-..-++..+|++.+|-.+|..|-.+.. .+|
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~--------D----p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--ddp 103 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIY--------D----AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--DAP 103 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--------C----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCc
Confidence 358889999999999999988887766 2 23456667777788899999999999998876553 344
Q ss_pred hhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 219 ~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
+ -....|..++.-|+...|.+.|..+....
T Consensus 104 ~----~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 104 Q----APWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred h----HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3 23445888888999999999999998755
No 122
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=95.10 E-value=0.039 Score=40.82 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=38.6
Q ss_pred HHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccC
Q 014143 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN 393 (430)
Q Consensus 345 ~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~ 393 (430)
.|+.+++--.++++..||..|++|++.||.+|..++..|+|.-.-+...
T Consensus 4 ~i~~~l~~~~~~S~~eLa~~~~~s~~~ve~mL~~l~~kG~I~~~~~~~~ 52 (69)
T PF09012_consen 4 EIRDYLRERGRVSLAELAREFGISPEAVEAMLEQLIRKGYIRKVDMSSC 52 (69)
T ss_dssp HHHHHHHHS-SEEHHHHHHHTT--HHHHHHHHHHHHCCTSCEEEEEE--
T ss_pred HHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCCCC
Confidence 4567777889999999999999999999999999999999985544443
No 123
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.06 E-value=0.19 Score=36.53 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=46.8
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhh
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK-NNKKLKQLYQKALAI 211 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~-d~~ka~~~l~~a~~~ 211 (430)
...+|..+...|+|++|...+.+...... ....++...+.++..+| ++.+|...++++.++
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p------------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDP------------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHST------------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 34788888888999999888888887721 13567777788888888 688888888887654
No 124
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.05 E-value=0.61 Score=44.91 Aligned_cols=164 Identities=15% Similarity=0.098 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHH
Q 014143 57 LKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF 136 (430)
Q Consensus 57 l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~ 136 (430)
..|++++|...|.+.++-..+++.++-+ +.+. +=-.+..+-..++. |. .....+...++.. .+.+
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~-~~~d---TfllLskvY~ridQ-P~----~AL~~~~~gld~f----P~~V-- 290 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQF-PHPD---TFLLLSKVYQRIDQ-PE----RALLVIGEGLDSF----PFDV-- 290 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcC-Cchh---HHHHHHHHHHHhcc-HH----HHHHHHhhhhhcC----Cchh--
Confidence 3789999999999999999999988876 3221 11122233333433 32 2233333333321 1111
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014143 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (430)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~ 216 (430)
....-.|.+++..|++++|.+++..+.+. + ...+|-+.+++--|+--++...|-.+|++....- +.
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~----~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG--~~ 356 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKL--------H----PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG--AQ 356 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------C----CccceeeeeeeeccccCCChHHHHHHHHHHHHhc--CC
Confidence 12236788999999999999999999887 2 3356777777777777788888888888776432 34
Q ss_pred CchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhh
Q 014143 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (430)
Q Consensus 217 ~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (430)
.|.+-.- -|.-++..+.|.-+...|.-+..+..
T Consensus 357 speLf~N----igLCC~yaqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 357 SPELFCN----IGLCCLYAQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred ChHHHhh----HHHHHHhhcchhhhHHHHHHHHhhcc
Confidence 4544322 25556667777777777777765543
No 125
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.01 E-value=0.058 Score=39.39 Aligned_cols=51 Identities=24% Similarity=0.476 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHH
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLG-KYKEMMDAYREMLTY 83 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~-~~~~l~e~~~~l~~~ 83 (430)
.+++++|+..|.+.++.++++ ..++..++.+|...| +++++++.+.+.++.
T Consensus 16 ~~~~~~A~~~~~~ai~~~p~~----~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIELDPNN----AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp TTHHHHHHHHHHHHHHHSTTH----HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 457999999999999998754 568899999999999 799999999988775
No 126
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.01 E-value=0.27 Score=37.49 Aligned_cols=84 Identities=18% Similarity=0.148 Sum_probs=58.5
Q ss_pred HhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHh
Q 014143 148 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIREC 227 (430)
Q Consensus 148 ~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~ 227 (430)
+.|+|++|..++.++...... + . .-.++...+..++..|++.+|-.++++ .+.. |.. ......
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~----~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-----~~~-~~~~~l 63 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----N----P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-----PSN-PDIHYL 63 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----T----H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-----HCH-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC-----C----h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-----CCC-HHHHHH
Confidence 468999999999999988532 1 1 234555678899999999999998876 3222 111 222233
Q ss_pred hhHhhhhhhcHHHHHHHHHHH
Q 014143 228 GGKMHMAERQWADAATDFFEA 248 (430)
Q Consensus 228 ~g~~~~~~~~y~~A~~~f~ea 248 (430)
.|..+...++|.+|...|.++
T Consensus 64 ~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 64 LARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHhcC
Confidence 489999999999999988654
No 127
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.96 E-value=0.23 Score=51.73 Aligned_cols=146 Identities=16% Similarity=0.212 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCC
Q 014143 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQN 111 (430)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~ 111 (430)
+|.|.+.|.+.+..++. -.+|..-+|.+|.++++++.+.-++++-++.. +. +.+ ++..+...+.
T Consensus 471 ~d~a~~~fr~Al~~~~r----hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~---nsv--i~~~~g~~~~------ 534 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVDPR----HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PS---NSV--ILCHIGRIQH------ 534 (638)
T ss_pred HHhHHHHHHhhhcCCch----hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-cc---chh--HHhhhhHHHH------
Confidence 34444444444433332 14566778999999999999999998887764 32 111 2222322222
Q ss_pred hhHHHHHHHHHHHHHHHh--hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHH
Q 014143 112 FSLLREFYQTTLKALEEA--KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (430)
Q Consensus 112 ~~~~~~~~~~~~e~l~~~--~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~ 189 (430)
.....+.++..++.+ -+.+--+ +..+-|.++...|+|++|+..|.+++....+ + .-++.+..
T Consensus 535 ---~~k~~d~AL~~~~~A~~ld~kn~l-~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-----e-------s~v~~llg 598 (638)
T KOG1126|consen 535 ---QLKRKDKALQLYEKAIHLDPKNPL-CKYHRASILFSLGRYVEALQELEELKELVPQ-----E-------SSVFALLG 598 (638)
T ss_pred ---HhhhhhHHHHHHHHHHhcCCCCch-hHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-----h-------HHHHHHHH
Confidence 222333344433332 1223222 2247889999999999999999999999652 3 24677778
Q ss_pred HHHHhhcCHHHHHHHHHHHH
Q 014143 190 QMYTETKNNKKLKQLYQKAL 209 (430)
Q Consensus 190 ~l~~~~~d~~ka~~~l~~a~ 209 (430)
++|-..|+...|.--+.=|.
T Consensus 599 ki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 599 KIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHHHccchHHHHhhHHHh
Confidence 99999999888766554443
No 128
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.85 E-value=0.13 Score=43.62 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=59.5
Q ss_pred hhHHHHHHhhcccC-CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 014143 15 VSRVLCSILEKGLV-ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 87 (430)
Q Consensus 15 ~~~~~~~~~ak~~~-~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~ 87 (430)
.+...+|-.|+... ++++++|++.|+.+...-| -+++..++--.|+..|++.|++++++..+..|++.. |.
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP-~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-P~ 79 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYP-FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-PT 79 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 45667788887654 5579999999999976655 467778999999999999999999999999999986 64
No 129
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=94.77 E-value=3.3 Score=41.74 Aligned_cols=191 Identities=9% Similarity=0.057 Sum_probs=91.8
Q ss_pred cCCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC
Q 014143 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (430)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (430)
...++++.|.+.|.+..+.+++. .+ ...+ ..+.++...|+++++.+.+..+.+.. |..+ ...+-+...+..
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~-~~-~~~l-~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~-----~al~ll~~~~~~ 199 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADND-QL-PVEI-TRVRIQLARNENHAARHGVDKLLEVA-PRHP-----EVLRLAEQAYIR 199 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcc-hH-HHHH-HHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH-----HHHHHHHHHHHH
Confidence 45667778888887776655432 11 1111 23778888888888888888887764 4311 111112222221
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhhhh--hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHH
Q 014143 107 SASQNFSLLREFYQTTLKALEEAKNER--LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (430)
Q Consensus 107 ~~~~~~~~~~~~~~~~~e~l~~~~~~k--l~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~ 184 (430)
..+ .+...++++.......-...+. +..+....+........+-+...++++.+.... ....++
T Consensus 200 ~gd--w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~------------~~~~~~ 265 (398)
T PRK10747 200 TGA--WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT------------RHQVAL 265 (398)
T ss_pred HHh--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH------------hCCHHH
Confidence 111 3233333333322100000000 110111111111222223333344444443331 112466
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHH
Q 014143 185 YAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (430)
Q Consensus 185 ~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (430)
+..-++.+...|+..+|...+.++.+. -++|.+...+ |. +..+++.++....-...
T Consensus 266 ~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~~l~----~~--l~~~~~~~al~~~e~~l 321 (398)
T PRK10747 266 QVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLVLLI----PR--LKTNNPEQLEKVLRQQI 321 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHHHH----hh--ccCCChHHHHHHHHHHH
Confidence 677788999999999999999887652 2345332211 11 12367777655544443
No 130
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.71 E-value=0.37 Score=47.91 Aligned_cols=93 Identities=13% Similarity=0.042 Sum_probs=73.0
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchh
Q 014143 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (430)
Q Consensus 141 ~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~ 220 (430)
..|.-.+..|+|++|.+.+.+......+ ....+...+.++..+|++..|...++++..+.. .
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-----~- 68 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPN------------NAELYADRAQANIKLGNFTEAVADANKAIELDP-----S- 68 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----C-
Confidence 5677888899999999999999877321 235667778889999999999999999876532 2
Q ss_pred HHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 221 MGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 221 ~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
.+..+...|.++...|+|.+|...|..+...
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 1223455588999999999999999998763
No 131
>PRK14574 hmsH outer membrane protein; Provisional
Probab=94.57 E-value=9.4 Score=42.35 Aligned_cols=201 Identities=9% Similarity=0.045 Sum_probs=127.7
Q ss_pred HHHHHHHHHHhhc---CCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 32 PEGALAGFAEVVA---MEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 32 ~~~Ai~~~~~ii~---~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+.|+..+..++. ..|+....-.++...-.-.+...|++.++++.|+.+... +.-.+.++...+-...-... .|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~--~~~~P~y~~~a~adayl~~~-~P 343 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE--GYKMPDYARRWAASAYIDRR-LP 343 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc--CCCCCHHHHHHHHHHHHhcC-Cc
Confidence 4788999999887 434332333556666677888899999999999999864 22236666555443333222 24
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhh-hh--HHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccC-C--CCCcchhhcchHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNE-RL--WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR-E--DGTDDQKKGSQLL 182 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~-kl--~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~-~--~~~~d~~~~~~~~ 182 (430)
. ....+|..+.. ...+. .. -+-....|.--|.+.|+|++|..++.++.....- - .|...+.....-.
T Consensus 344 ~----kA~~l~~~~~~---~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 344 E----KAAPILSSLYY---SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred H----HHHHHHHHHhh---ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 3 33344444322 11110 01 1111347788889999999999999999884330 0 0100111133456
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHH
Q 014143 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (430)
Q Consensus 183 e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea 248 (430)
+.....+.++...||+++|...+++....... ++. +....+.+....+.+.+|...+-.+
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~--n~~----l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA--NQN----LRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 88888899999999999999999887654322 233 3445577888899999999888554
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.41 E-value=3.4 Score=38.62 Aligned_cols=157 Identities=17% Similarity=0.217 Sum_probs=88.5
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+..+-|-..++.+-..-|. ..|..+-=+.++-..|+|+++.++|..++..- +.-.-.+. |.+.-.-. .
T Consensus 65 ~~~~~lAq~C~~~L~~~fp~----S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~K----RKlAilka--~ 133 (289)
T KOG3060|consen 65 TGRDDLAQKCINQLRDRFPG----SKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRK----RKLAILKA--Q 133 (289)
T ss_pred hcchHHHHHHHHHHHHhCCC----ChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHH----HHHHHHHH--c
Confidence 33456676776666433332 24555555677888899999999999998763 32111111 22222211 2
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
+++.+..+.+.+-+-.- .++-..| ..|+++|+..|+|.+|.=.+.++.-..+. ....---+.+
T Consensus 134 GK~l~aIk~ln~YL~~F---~~D~EAW----~eLaeiY~~~~~f~kA~fClEE~ll~~P~----------n~l~f~rlae 196 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDKF---MNDQEAW----HELAEIYLSEGDFEKAAFCLEELLLIQPF----------NPLYFQRLAE 196 (289)
T ss_pred CCcHHHHHHHHHHHHHh---cCcHHHH----HHHHHHHHhHhHHHHHHHHHHHHHHcCCC----------cHHHHHHHHH
Confidence 33332222222222110 1121222 47899999999999999999998766431 1222222333
Q ss_pred HHHHHh-hcCHHHHHHHHHHHHhhhc
Q 014143 189 IQMYTE-TKNNKKLKQLYQKALAIKS 213 (430)
Q Consensus 189 ~~l~~~-~~d~~ka~~~l~~a~~~~~ 213 (430)
.+++.. ..|+.-++.+|.+|.+++.
T Consensus 197 ~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 197 VLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 344332 3478889999999887643
No 133
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.40 E-value=2.4 Score=45.40 Aligned_cols=141 Identities=13% Similarity=0.167 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHHHHHHHhh-hhhh----HHHHhHHHHHHHH-HhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHH
Q 014143 112 FSLLREFYQTTLKALEEAK-NERL----WFKTNLKLCKIWF-DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVY 185 (430)
Q Consensus 112 ~~~~~~~~~~~~e~l~~~~-~~kl----~~r~~~~La~~~~-~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~ 185 (430)
.+.--+++.+.+.|++.+. +.++ -++++++||.+++ ++.+++.|...|.+-...+.. .+-. .++....
T Consensus 30 l~~Y~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~-----d~k~~~~ 103 (608)
T PF10345_consen 30 LKQYYKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLT-----DLKFRCQ 103 (608)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchH-----HHHHHHH
Confidence 3444556666666666543 2222 2378889999988 678999999999988888865 2222 3455666
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcchh
Q 014143 186 AIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQR 259 (430)
Q Consensus 186 l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~ 259 (430)
...++++...+... |...++++........+....-.++.....+++..+|+..|...+.......+..+++.
T Consensus 104 ~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 104 FLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 66689888888777 88888887544443332222222334434444444899999999988877665556553
No 134
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.36 E-value=1.2 Score=38.78 Aligned_cols=131 Identities=8% Similarity=-0.025 Sum_probs=85.7
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCC
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (430)
.+.++..+.+.+.++++....+ -...++..++.++...|+++++...+...+...
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~----------------------- 65 (168)
T CHL00033 11 IDKTFTIVADILLRILPTTSGE--KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE----------------------- 65 (168)
T ss_pred cccccccchhhhhHhccCCchh--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----------------------
Confidence 3445677788887777654422 246788899999999999999999988776642
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHH
Q 014143 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (430)
Q Consensus 108 ~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~ 187 (430)
|+... . ..+...+|.++...|++++|...+......-... .+. ...+..++..
T Consensus 66 ~~~~~----~------------------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~---~~~--~~~la~i~~~ 118 (168)
T CHL00033 66 IDPYD----R------------------SYILYNIGLIHTSNGEHTKALEYYFQALERNPFL---PQA--LNNMAVICHY 118 (168)
T ss_pred ccchh----h------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHH--HHHHHHHHHH
Confidence 11000 0 0123488999999999999999998887652211 110 1223344444
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHh
Q 014143 188 EIQMYTETKNNKKLKQLYQKALA 210 (430)
Q Consensus 188 ~~~l~~~~~d~~ka~~~l~~a~~ 210 (430)
..+.+...|++..|...++++..
T Consensus 119 ~~~~~~~~g~~~~A~~~~~~a~~ 141 (168)
T CHL00033 119 RGEQAIEQGDSEIAEAWFDQAAE 141 (168)
T ss_pred hhHHHHHcccHHHHHHHHHHHHH
Confidence 55555678888877777766643
No 135
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.30 E-value=0.33 Score=48.27 Aligned_cols=88 Identities=15% Similarity=0.225 Sum_probs=70.5
Q ss_pred cCCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC
Q 014143 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (430)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (430)
+.++++++|++.|.+.+..++++ ..++..++.+|...|++++++..+...+..-
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~P~~----~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~---------------------- 66 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLDPNN----AELYADRAQANIKLGNFTEAVADANKAIELD---------------------- 66 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------
Confidence 45678999999999999988754 4677889999999999999999988776652
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014143 107 SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (430)
Q Consensus 107 ~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~ 166 (430)
|+ +. ....++|.++...|+|++|...+++....-
T Consensus 67 -P~-~~------------------------~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 67 -PS-LA------------------------KAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred -cC-CH------------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 22 00 113478899999999999999999988874
No 136
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=94.13 E-value=0.74 Score=39.29 Aligned_cols=29 Identities=17% Similarity=0.022 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~ 167 (430)
...+|..+...|++++|...+........
T Consensus 95 ~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 95 VYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45889999999999999999999888754
No 137
>PLN03077 Protein ECB2; Provisional
Probab=94.12 E-value=2.8 Score=46.78 Aligned_cols=180 Identities=11% Similarity=0.074 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.++.++|.+.|... .++ ..++..++..|.+.|+.+++++++.++... + +.+..+ ....++..+....
T Consensus 537 ~G~~~~A~~~f~~~---~~d-----~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~--g-~~Pd~~--T~~~ll~a~~~~g 603 (857)
T PLN03077 537 CGRMNYAWNQFNSH---EKD-----VVSWNILLTGYVAHGKGSMAVELFNRMVES--G-VNPDEV--TFISLLCACSRSG 603 (857)
T ss_pred cCCHHHHHHHHHhc---CCC-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--C-CCCCcc--cHHHHHHHHhhcC
Confidence 34566777777665 111 334566777777777777777777776642 2 222222 2444555555421
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
. .+...++++...+. . .-.-......-++..+...|++++|.++++++... + | ...+.. .
T Consensus 604 ~--v~ea~~~f~~M~~~---~-gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~---p----d----~~~~~a---L 663 (857)
T PLN03077 604 M--VTQGLEYFHSMEEK---Y-SITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT---P----D----PAVWGA---L 663 (857)
T ss_pred h--HHHHHHHHHHHHHH---h-CCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCC---C----C----HHHHHH---H
Confidence 1 22222222222110 0 00001123446777777888888888877766311 1 1 112222 2
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHH
Q 014143 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFE 247 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~e 247 (430)
+..|...+|...++...++.... +|.--+ ++...+-+|...|+|.+|.+....
T Consensus 664 l~ac~~~~~~e~~e~~a~~l~~l-----~p~~~~-~y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 664 LNACRIHRHVELGELAAQHIFEL-----DPNSVG-YYILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred HHHHHHcCChHHHHHHHHHHHhh-----CCCCcc-hHHHHHHHHHHCCChHHHHHHHHH
Confidence 23455566777666554443322 222111 223333455566666666554433
No 138
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.09 E-value=5.9 Score=38.91 Aligned_cols=225 Identities=13% Similarity=0.119 Sum_probs=138.9
Q ss_pred CCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh-------hhhhhHHHHHHHHHH
Q 014143 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA-------VTRNYSEKCINNIMD 102 (430)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~-------~~k~~~~k~v~~il~ 102 (430)
.+++.|+....+++++-.+ ....|+.+..+++...++|.|.+++.+-..-+..+... ..+-.+++.-+.+-+
T Consensus 20 ~~~~~al~~w~~~L~~l~~-~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~ 98 (518)
T KOG1941|consen 20 NQTEKALQVWTKVLEKLSD-LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCE 98 (518)
T ss_pred chHHHHHHHHHHHHHHHHH-HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899998888876433 33468888888888899999888876543333322111 122233333333322
Q ss_pred Hh---------cCCCCC--------------ChhHHHHHHHHHHHHHHHh------hhhh-hHHHHhHHHHHHHHHhccH
Q 014143 103 FV---------SGSASQ--------------NFSLLREFYQTTLKALEEA------KNER-LWFKTNLKLCKIWFDMGEY 152 (430)
Q Consensus 103 ~~---------~~~~~~--------------~~~~~~~~~~~~~e~l~~~------~~~k-l~~r~~~~La~~~~~~g~~ 152 (430)
+- ...|+. +...-.-.++.+++.++.+ +.++ +-+++..-|+.+|-...||
T Consensus 99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~ 178 (518)
T KOG1941|consen 99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY 178 (518)
T ss_pred hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh
Confidence 21 113331 1112234566777776652 2333 3448888999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhh
Q 014143 153 GRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMH 232 (430)
Q Consensus 153 ~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~ 232 (430)
++|+-+..+.......- +.+|-. ..+..-.....+-.+..+|..-.|+++-+.|.++.-...|.-+++.--.+.|.+|
T Consensus 179 ~Kal~f~~kA~~lv~s~-~l~d~~-~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 179 EKALFFPCKAAELVNSY-GLKDWS-LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hHHhhhhHhHHHHHHhc-CcCchh-HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 99987777766654321 222310 0111111122223345567788888888888887665556566776667889999
Q ss_pred hhhhcHHHHHHHHHHHHHhhhhhcc
Q 014143 233 MAERQWADAATDFFEAFKNYDEAGN 257 (430)
Q Consensus 233 ~~~~~y~~A~~~f~ea~~~~~~~~~ 257 (430)
-..+|-+.|+.-|-.++.+-...++
T Consensus 257 R~~gd~e~af~rYe~Am~~m~~~gd 281 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAMGTMASLGD 281 (518)
T ss_pred HhcccHhHHHHHHHHHHHHHhhhhh
Confidence 9999999999998888877666554
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=94.06 E-value=2.1 Score=43.32 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=37.9
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHH
Q 014143 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLY 205 (430)
Q Consensus 140 ~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l 205 (430)
+.+|+.+++.|++++|..+|.+....-+ +| . ..+-..++.|..+||..++...+
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~~p-----~d----p---~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFNDP-----ED----P---NGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCC-----CC----c---hHHHHHHHHHHHhCchHHHHHHH
Confidence 3889999999999999988888776632 12 1 23334456788888887766543
No 140
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=94.02 E-value=0.56 Score=34.65 Aligned_cols=85 Identities=21% Similarity=0.417 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|..+++..+.. ..+...++.++...|+++++.+++...+... |
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----------------------~ 65 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDN----ADAYYNLAAAYYKLGKYEEALEDYEKALELD-----------------------P 65 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------------------C
Confidence 356888888888888776543 2566778888888888888887776665432 1
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~ 165 (430)
. .. .....+|.++...|++++|.+.+..+...
T Consensus 66 ~--~~-----------------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 D--NA-----------------------KAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred c--ch-----------------------hHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 1 00 11347778888889999988888777554
No 141
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.98 E-value=0.23 Score=36.52 Aligned_cols=53 Identities=21% Similarity=0.407 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
..+++++|++.+..++..+|++ .......+.++++.|+++++.+.+...++.-
T Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELDPDD----PELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred hCCCHHHHHHHHHHHHHhCccc----chhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4578999999999999998864 5666788999999999999999999998864
No 142
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.91 E-value=5.6 Score=40.54 Aligned_cols=102 Identities=14% Similarity=0.155 Sum_probs=65.7
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCC-cchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 014143 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT-DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 215 (430)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~-~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~ 215 (430)
.+..-.|+++.+++++++|.+.+......-....+. .. ..-++.--+...| -.+|+.+|..++++|..+
T Consensus 463 Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~---~~plV~Ka~l~~q---wk~d~~~a~~Ll~KA~e~---- 532 (606)
T KOG0547|consen 463 EVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN---AAPLVHKALLVLQ---WKEDINQAENLLRKAIEL---- 532 (606)
T ss_pred hHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc---chhhhhhhHhhhc---hhhhHHHHHHHHHHHHcc----
Confidence 445578999999999999998887777664321110 00 1112222222223 348999999999998754
Q ss_pred CCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 216 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 216 ~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
||+- ..-+...|.+-..+++..+|..+|-++..
T Consensus 533 -Dpkc-e~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 533 -DPKC-EQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred -CchH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4432 11234456777788899999999988854
No 143
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.76 E-value=0.15 Score=32.29 Aligned_cols=29 Identities=24% Similarity=0.544 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
++.+|+.+|.+.|+|++++++|++.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999987654
No 144
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.74 E-value=1.7 Score=38.51 Aligned_cols=111 Identities=11% Similarity=0.124 Sum_probs=74.9
Q ss_pred hhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhh
Q 014143 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 130 (430)
Q Consensus 51 ~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~ 130 (430)
+..-.++..++..|.+.|+.+++++.|...+.+- .+......+.-.++...-...+ ...+...++.+...++...
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l~~irv~i~~~d--~~~v~~~i~ka~~~~~~~~ 107 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCLNVIRVAIFFGD--WSHVEKYIEKAESLIEKGG 107 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhccc
Confidence 4467899999999999999999999999988874 4555555555555554222223 6677788888877766532
Q ss_pred hhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014143 131 NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (430)
Q Consensus 131 ~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~ 166 (430)
+-..--|+..--|-.++..|+|.+|++.+-++....
T Consensus 108 d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 108 DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 212222333344555666799999998887775443
No 145
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.60 E-value=11 Score=39.43 Aligned_cols=156 Identities=14% Similarity=0.239 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCC
Q 014143 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (430)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (430)
+.+++|++.+... +.. + -+.+.-=++++++.|+|+++++.|+.+.+-. .+-.-+...-+++......+.
T Consensus 93 nk~Dealk~~~~~-~~~--~----~~ll~L~AQvlYrl~~ydealdiY~~L~kn~----~dd~d~~~r~nl~a~~a~l~~ 161 (652)
T KOG2376|consen 93 NKLDEALKTLKGL-DRL--D----DKLLELRAQVLYRLERYDEALDIYQHLAKNN----SDDQDEERRANLLAVAAALQV 161 (652)
T ss_pred ccHHHHHHHHhcc-ccc--c----hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHhhhH
Confidence 3466777766622 221 1 2344445799999999999999999997742 333344444444444332221
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHH---H
Q 014143 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVY---A 186 (430)
Q Consensus 110 ~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~---l 186 (430)
.+. +.+..+.+ -.....++.|-++.+.|+|++|.++|......|...-..+|...-...-++- +
T Consensus 162 -------~~~----q~v~~v~e--~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv 228 (652)
T KOG2376|consen 162 -------QLL----QSVPEVPE--DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV 228 (652)
T ss_pred -------HHH----HhccCCCc--chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 000 11000110 0113345788889999999999999999944443221001100001112221 2
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHH
Q 014143 187 IEIQMYTETKNNKKLKQLYQKAL 209 (430)
Q Consensus 187 ~~~~l~~~~~d~~ka~~~l~~a~ 209 (430)
..+-++..+|+..+|..+|....
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHHHH
Confidence 22234566799999999887653
No 146
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=93.36 E-value=4.1 Score=39.25 Aligned_cols=44 Identities=14% Similarity=0.243 Sum_probs=24.8
Q ss_pred cCCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHH
Q 014143 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMM 74 (430)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~ 74 (430)
+-.++|..+|.... +-...+ +-......-+.+.+...|+++..+
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~---~~~~e~~~~~~Rs~iAlg~~~~vl 55 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSP---ENKLERDFYQYRSYIALGQYDSVL 55 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTC---HHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHhhhHHHHHHHhh-ccCCCc---hhHHHHHHHHHHHHHHcCChhHHH
Confidence 34567888887766 322222 113455556677778888877554
No 147
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.31 E-value=9 Score=41.62 Aligned_cols=150 Identities=13% Similarity=0.110 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCC
Q 014143 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQN 111 (430)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~ 111 (430)
+.+|+..++..+...+.+ ..++..++.+..+.|+++++..++..++.+. +....+... .. .++.....
T Consensus 68 ~~~~~~~~~~~~~~~~~~----~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~-~a-~~L~~~~~----- 135 (694)
T PRK15179 68 PAAALPELLDYVRRYPHT----ELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFIL-ML-RGVKRQQG----- 135 (694)
T ss_pred hHhhHHHHHHHHHhcccc----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHH-HH-HHHHHhcc-----
Confidence 445555555444433322 6788889999999999999999999999876 543222111 11 11111111
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHH
Q 014143 112 FSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM 191 (430)
Q Consensus 112 ~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l 191 (430)
.+.....++.. ++...+.. .....+|..+.+.|+|++|..++.++... .+ ++ -+.+..-+..
T Consensus 136 ~eeA~~~~~~~---l~~~p~~~---~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--~p---~~-------~~~~~~~a~~ 197 (694)
T PRK15179 136 IEAGRAEIELY---FSGGSSSA---REILLEAKSWDEIGQSEQADACFERLSRQ--HP---EF-------ENGYVGWAQS 197 (694)
T ss_pred HHHHHHHHHHH---hhcCCCCH---HHHHHHHHHHHHhcchHHHHHHHHHHHhc--CC---Cc-------HHHHHHHHHH
Confidence 11111111111 11111111 22347778888888888888888888763 11 12 2344455566
Q ss_pred HHhhcCHHHHHHHHHHHHhh
Q 014143 192 YTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 192 ~~~~~d~~ka~~~l~~a~~~ 211 (430)
....|+...|...|+++...
T Consensus 198 l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 198 LTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77778888888888877543
No 148
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=93.22 E-value=10 Score=40.09 Aligned_cols=187 Identities=13% Similarity=0.095 Sum_probs=114.6
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+|..+|...+...++..+.. ...--..+++.+....++.+..++.+-+..- + +.--..|.+ .++.+..
T Consensus 597 agdv~~ar~il~~af~~~pns----eeiwlaavKle~en~e~eraR~llakar~~s-g--TeRv~mKs~--~~er~ld-- 665 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNS----EEIWLAAVKLEFENDELERARDLLAKARSIS-G--TERVWMKSA--NLERYLD-- 665 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCc----HHHHHHHHHHhhccccHHHHHHHHHHHhccC-C--cchhhHHHh--HHHHHhh--
Confidence 456778888888887776642 1222345678888888888887776665431 1 111112221 1222221
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
+.+-...+++-+++. --.|.++.+.+|+++.+.++.+.|.+.+..-.+.|.. .+-+.+..
T Consensus 666 --~~eeA~rllEe~lk~------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~------------~ipLWllL 725 (913)
T KOG0495|consen 666 --NVEEALRLLEEALKS------FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN------------SIPLWLLL 725 (913)
T ss_pred --hHHHHHHHHHHHHHh------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC------------CchHHHHH
Confidence 122233343333331 1245578889999999999999988766666666643 23456667
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
+++--..|+..+|+..+++++.-+ |. ...+|+-+..+-...|+-..|....-.++..+
T Consensus 726 akleEk~~~~~rAR~ildrarlkN-----Pk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQec 783 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKN-----PK-NALLWLESIRMELRAGNKEQAELLMAKALQEC 783 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcC-----CC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 788888899999999999986322 22 22355555566666677777777777776544
No 149
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=12 Score=38.55 Aligned_cols=89 Identities=20% Similarity=0.280 Sum_probs=65.0
Q ss_pred HHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc-hhH
Q 014143 143 CKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP-RIM 221 (430)
Q Consensus 143 a~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~-~~~ 221 (430)
|.-++..|||.+|.+.+.+.-+.-+ +| -..|..-+-.|+.+++++.|-.-.+++... +| .+.
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P-----~D-------a~lYsNRAac~~kL~~~~~aL~Da~~~ieL-----~p~~~k 427 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDP-----ED-------ARLYSNRAACYLKLGEYPEALKDAKKCIEL-----DPNFIK 427 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCC-----ch-------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CchHHH
Confidence 7788899999999999999655521 23 245666677788999999876665554432 33 345
Q ss_pred HHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 222 GIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 222 ~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
|.++. |..+...++|..|...|.++.+
T Consensus 428 gy~RK--g~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 428 AYLRK--GAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 54444 8888899999999999998865
No 150
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.93 E-value=7.6 Score=35.83 Aligned_cols=98 Identities=8% Similarity=-0.019 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
..+.|-+++..|.|++|...+..-.....- |. .-..+....-..+..|+..+|+.+++++.......+.+
T Consensus 106 LNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y--~~--------~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~ 175 (250)
T COG3063 106 LNNYGAFLCAQGRPEEAMQQFERALADPAY--GE--------PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPA 175 (250)
T ss_pred hhhhhHHHHhCCChHHHHHHHHHHHhCCCC--CC--------cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChH
Confidence 446777777777777777655554433110 10 01112222223456677777777777776544332222
Q ss_pred hhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 219 ~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
. +.....|..+|+|-.|..+|-.--.+.
T Consensus 176 ~------l~~a~~~~~~~~y~~Ar~~~~~~~~~~ 203 (250)
T COG3063 176 L------LELARLHYKAGDYAPARLYLERYQQRG 203 (250)
T ss_pred H------HHHHHHHHhcccchHHHHHHHHHHhcc
Confidence 1 122456667777777777776665444
No 151
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=92.90 E-value=2.6 Score=40.03 Aligned_cols=96 Identities=9% Similarity=-0.004 Sum_probs=68.5
Q ss_pred HHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHH
Q 014143 146 WFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIR 225 (430)
Q Consensus 146 ~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~ 225 (430)
....|+|++|...++.+...-+++ .+.-..+...+.+|+..|++..|...+....+. .++........
T Consensus 153 ~~~~~~y~~Ai~af~~fl~~yP~s---------~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~---yP~s~~~~dAl 220 (263)
T PRK10803 153 VQDKSRQDDAIVAFQNFVKKYPDS---------TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN---YPKSPKAADAM 220 (263)
T ss_pred HHhcCCHHHHHHHHHHHHHHCcCC---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCcchhHHH
Confidence 456799999999999988875432 233345567778899999999999998776432 23211122233
Q ss_pred HhhhHhhhhhhcHHHHHHHHHHHHHhhh
Q 014143 226 ECGGKMHMAERQWADAATDFFEAFKNYD 253 (430)
Q Consensus 226 ~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (430)
...|.++...+++..|...|-+..+.|.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3347778789999999999999988774
No 152
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=92.85 E-value=7.1 Score=41.25 Aligned_cols=189 Identities=19% Similarity=0.148 Sum_probs=120.1
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
...++.|-++|.+--...+ +.|..-.-+.+..-+++.++++.++...++.+ +...|-...+. ++.+.
T Consensus 631 n~e~eraR~llakar~~sg-----TeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlG--Qi~e~----- 697 (913)
T KOG0495|consen 631 NDELERARDLLAKARSISG-----TERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLG--QIEEQ----- 697 (913)
T ss_pred cccHHHHHHHHHHHhccCC-----cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHh--HHHHH-----
Confidence 3458889888888744322 35677777888888899999999888888887 66555443221 22222
Q ss_pred CCChhHHHHHHHHHHHHHH----HhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHH
Q 014143 109 SQNFSLLREFYQTTLKALE----EAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~----~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~ 184 (430)
...++.+++.-- .|.+.- -+-+-|+++-+..|+...|..+|..-+..-. . -..+
T Consensus 698 -------~~~ie~aR~aY~~G~k~cP~~i---pLWllLakleEk~~~~~rAR~ildrarlkNP-----k-------~~~l 755 (913)
T KOG0495|consen 698 -------MENIEMAREAYLQGTKKCPNSI---PLWLLLAKLEEKDGQLVRARSILDRARLKNP-----K-------NALL 755 (913)
T ss_pred -------HHHHHHHHHHHHhccccCCCCc---hHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-----C-------cchh
Confidence 233444444211 111111 2223677888888888888888888777622 1 2357
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhh-hcc-------C--------------------CCchhHHHHHHhhhHhhhhhh
Q 014143 185 YAIEIQMYTETKNNKKLKQLYQKALAI-KSA-------I--------------------PHPRIMGIIRECGGKMHMAER 236 (430)
Q Consensus 185 ~l~~~~l~~~~~d~~ka~~~l~~a~~~-~~~-------~--------------------~~~~~~~~~~~~~g~~~~~~~ 236 (430)
++.-+|+-++.|+...|+..+.+|..- .++ | .||++. ..-|+++..++
T Consensus 756 wle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVl----laia~lfw~e~ 831 (913)
T KOG0495|consen 756 WLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVL----LAIAKLFWSEK 831 (913)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhH----HHHHHHHHHHH
Confidence 788888888899999888888777421 000 0 123322 23477888899
Q ss_pred cHHHHHHHHHHHHHhhhhhc
Q 014143 237 QWADAATDFFEAFKNYDEAG 256 (430)
Q Consensus 237 ~y~~A~~~f~ea~~~~~~~~ 256 (430)
+|.+|..-|.-+...-...|
T Consensus 832 k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 832 KIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred HHHHHHHHHHHHHccCCccc
Confidence 99999999998876443334
No 153
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.64 E-value=1.4 Score=42.47 Aligned_cols=186 Identities=15% Similarity=0.087 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHhcCCC
Q 014143 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA-VTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~-~~k~~~~k~v~~il~~~~~~~ 108 (430)
+-|..|.+.|++.++..+- ..-.--+.++|-...+...++..|..-+..+ +. ++---...-|.+.|+..+
T Consensus 237 gm~r~AekqlqssL~q~~~-----~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam~~~~--- 307 (478)
T KOG1129|consen 237 GMPRRAEKQLQSSLTQFPH-----PDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAMEQQE--- 307 (478)
T ss_pred cChhhhHHHHHHHhhcCCc-----hhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHHHhHH---
Confidence 4577788888887766541 1112334566666666666666666666555 32 111111111122222211
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
...++|...++. ...+-+.+- -+|.-|+-.|+.+-|+.++..+... |.. .-|++..+
T Consensus 308 -----~a~~lYk~vlk~-~~~nvEaiA-----cia~~yfY~~~PE~AlryYRRiLqm-----G~~-------speLf~Ni 364 (478)
T KOG1129|consen 308 -----DALQLYKLVLKL-HPINVEAIA-----CIAVGYFYDNNPEMALRYYRRILQM-----GAQ-------SPELFCNI 364 (478)
T ss_pred -----HHHHHHHHHHhc-CCccceeee-----eeeeccccCCChHHHHHHHHHHHHh-----cCC-------ChHHHhhH
Confidence 223444444331 111111110 1122233345555566666665554 111 12334444
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
.-.|+.-+.++-+-..+.+|.... ..|..-+.+|.--|.+....||+.-|.++|.-++.
T Consensus 365 gLCC~yaqQ~D~~L~sf~RAlsta---t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 365 GLCCLYAQQIDLVLPSFQRALSTA---TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred HHHHHhhcchhhhHHHHHHHHhhc---cCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 444555555555555555544332 22333445555555555566666666666666653
No 154
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=92.57 E-value=1.4 Score=36.63 Aligned_cols=81 Identities=11% Similarity=0.190 Sum_probs=63.6
Q ss_pred HHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcee-Eeee-ccCCEEEEccCCccchH----HHHHHHHHHHHHH
Q 014143 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID-GHID-QVNRLLERGDRSKGMKK----YTAIDKWNSQLRS 420 (430)
Q Consensus 347 ~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~-g~ID-q~~g~v~~~~~~~~~~~----~~~l~~w~~~v~~ 420 (430)
..+.++-.-.+.++||+.++.+..-|.+-|-+++.-|.+. -+.. ...|..+++.+-+.+.+ ...+++|+.++.+
T Consensus 34 ~~LL~~~~~~tvdelae~lnr~rStv~rsl~~L~~~GlV~Rek~~~~~Ggy~yiY~~i~~ee~k~~i~~~l~~w~~~~~~ 113 (126)
T COG3355 34 KALLEENGPLTVDELAEILNRSRSTVYRSLQNLLEAGLVEREKVNLKGGGYYYLYKPIDPEEIKKKILKDLDEWYDKMKQ 113 (126)
T ss_pred HHHHhhcCCcCHHHHHHHHCccHHHHHHHHHHHHHcCCeeeeeeccCCCceeEEEecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455678899999999999999999999999999984 2333 66778888866555544 4678889999999
Q ss_pred HHHHHhh
Q 014143 421 LYQTVSN 427 (430)
Q Consensus 421 l~~~v~~ 427 (430)
+....+.
T Consensus 114 ~i~~~~~ 120 (126)
T COG3355 114 LIEEFEK 120 (126)
T ss_pred HHHHHhc
Confidence 9887654
No 155
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.53 E-value=0.76 Score=43.17 Aligned_cols=104 Identities=14% Similarity=0.130 Sum_probs=81.3
Q ss_pred HHHhhcccC-CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 014143 20 CSILEKGLV-ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (430)
Q Consensus 20 ~~~~ak~~~-~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~ 98 (430)
.|-.|-++. .+++.+|...|.+-++..|+. ..+..+..=++..++.+|+++++...|-...+.+ +.-+|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s-~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-P~s~K-------- 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNS-TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-PKSPK-------- 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-cccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-CCCCC--------
Confidence 566666654 457999999999999998753 3357888999999999999999999988887765 43111
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCC
Q 014143 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE 169 (430)
Q Consensus 99 ~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~ 169 (430)
.|+ ..++||....+.|+-++|...|+++-+.-.++
T Consensus 214 --------Apd----------------------------allKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 214 --------APD----------------------------ALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred --------ChH----------------------------HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 122 14589999999999999999999999887543
No 156
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.50 E-value=12 Score=36.94 Aligned_cols=112 Identities=14% Similarity=0.032 Sum_probs=78.8
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014143 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (430)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~ 216 (430)
...++|++-++...++.++..+= +.+-..+|+.. +..-...++..++.++.++-+.++-+++++|.++.+.+.
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~----k~~l~lpgt~~---~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~ 156 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYC----KTCLGLPGTRA---GQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNND 156 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHH----HHHhcCCCCCc---ccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC
Confidence 33456777766666666655432 22223344422 122235556677888899999999999999999999999
Q ss_pred CchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhh
Q 014143 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA 255 (430)
Q Consensus 217 ~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~ 255 (430)
||.+--.+....|.++..-+||.+|.-+-..+++--...
T Consensus 157 D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~ 195 (518)
T KOG1941|consen 157 DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY 195 (518)
T ss_pred CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc
Confidence 987766677777889999999999998888887654443
No 157
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.26 E-value=10 Score=35.58 Aligned_cols=151 Identities=13% Similarity=0.197 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 014143 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (430)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~k 133 (430)
..-+.+=+.--.+.|+|+++.+.+..+...+ |..+. . +
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-----------------------p~s~~--~-----------~------ 71 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH-----------------------PFSPY--S-----------E------ 71 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------------------CCCcc--c-----------H------
Confidence 3444555555667899999998888877654 32111 0 0
Q ss_pred hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHH---HhhcCHHHHHHHHHHHHh
Q 014143 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMY---TETKNNKKLKQLYQKALA 210 (430)
Q Consensus 134 l~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~---~~~~d~~ka~~~l~~a~~ 210 (430)
+..+.++..+...|+|++|...+.+....-.+.+..+ -+-++...+.+. ...+|...++..+..-.+
T Consensus 72 ---qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-------Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~ 141 (254)
T COG4105 72 ---QAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-------YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKE 141 (254)
T ss_pred ---HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-------HHHHHHHHHHhccCCccccCHHHHHHHHHHHHH
Confidence 2356888999999999999999999998876554321 223333333221 233677888888887777
Q ss_pred hhccCCC----chh----------HHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhc
Q 014143 211 IKSAIPH----PRI----------MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (430)
Q Consensus 211 ~~~~~~~----~~~----------~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~ 256 (430)
+....|+ |.. ++.....-|.++...|.|..|...|.+..++|....
T Consensus 142 ~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~ 201 (254)
T COG4105 142 LVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTS 201 (254)
T ss_pred HHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccccc
Confidence 7666654 222 223335678999999999999999999999986543
No 158
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=92.11 E-value=3.3 Score=38.67 Aligned_cols=111 Identities=17% Similarity=0.201 Sum_probs=81.2
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhH
Q 014143 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIM 221 (430)
Q Consensus 142 La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~ 221 (430)
+++.....|+|.+|...+++....-.+ | ++.+....-.|...|+...|+..|.++.++.. .+|.+.
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~-----d-------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~--~~p~~~ 171 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPT-----D-------WEAWNLLGAALDQLGRFDEARRAYRQALELAP--NEPSIA 171 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCC-----C-------hhhhhHHHHHHHHccChhHHHHHHHHHHHhcc--CCchhh
Confidence 778888999999999999998877431 2 56777777788899999999999999987642 245544
Q ss_pred HHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhC
Q 014143 222 GIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLME 275 (430)
Q Consensus 222 ~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~l~~lL~~ 275 (430)
+- .|..++-.||+.+|..++..++... +....+...+.+...+.+
T Consensus 172 nN----lgms~~L~gd~~~A~~lll~a~l~~-----~ad~~v~~NLAl~~~~~g 216 (257)
T COG5010 172 NN----LGMSLLLRGDLEDAETLLLPAYLSP-----AADSRVRQNLALVVGLQG 216 (257)
T ss_pred hh----HHHHHHHcCCHHHHHHHHHHHHhCC-----CCchHHHHHHHHHHhhcC
Confidence 32 2677788999999999999996532 122334455666555443
No 159
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=92.06 E-value=8.4 Score=42.80 Aligned_cols=124 Identities=8% Similarity=0.103 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCC
Q 014143 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (430)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (430)
++.++|.+.++++++.++++ .-++++++-.|... +.+++.+++.+.+..+ +.+....++...--..+...|+
T Consensus 130 g~~~ka~~~yer~L~~D~~n----~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~---i~~kq~~~~~e~W~k~~~~~~~ 201 (906)
T PRK14720 130 NENKKLKGVWERLVKADRDN----PEIVKKLATSYEEE-DKEKAITYLKKAIYRF---IKKKQYVGIEEIWSKLVHYNSD 201 (906)
T ss_pred CChHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH---HhhhcchHHHHHHHHHHhcCcc
Confidence 45788888888888887654 56788888888888 8888888888777754 3332333333222333333233
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014143 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (430)
Q Consensus 110 ~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~ 166 (430)
+.++ ++. +++.+..........-+..-|-.-|.+.++|+++..+|+.+...-
T Consensus 202 -d~d~---f~~-i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~ 253 (906)
T PRK14720 202 -DFDF---FLR-IERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD 253 (906)
T ss_pred -cchH---HHH-HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC
Confidence 1212 222 222222221111222334456667778889999999999999884
No 160
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=92.04 E-value=0.51 Score=34.05 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=41.1
Q ss_pred HHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014143 147 FDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (430)
Q Consensus 147 ~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~ 210 (430)
.+.|+|++|.++++++....++ -.++.+..++++...|++.+|+..+.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD------------NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT------------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5789999999999999888431 245666778999999999999999876653
No 161
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.84 E-value=6.5 Score=37.03 Aligned_cols=44 Identities=14% Similarity=0.241 Sum_probs=34.6
Q ss_pred hHhhhhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCC
Q 014143 229 GKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESE 277 (430)
Q Consensus 229 g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~l~~lL~~~~ 277 (430)
+..|+..++|.+|-....++.... +...+.|-.++.|+.+.+.+
T Consensus 214 Av~~l~~~~~eeAe~lL~eaL~kd-----~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 214 AVCHLQLGRYEEAESLLEEALDKD-----AKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHhCCC
Confidence 456788999999999999998754 33356788999999887765
No 162
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=91.78 E-value=20 Score=37.94 Aligned_cols=98 Identities=17% Similarity=0.188 Sum_probs=65.1
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchh
Q 014143 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (430)
Q Consensus 141 ~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~ 220 (430)
.+|--+...|+|..|.+++++....+..++...+ -...+..+.+.+...+.|-..+|..-+..-. |.+
T Consensus 148 ~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~----~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e--------~~i 215 (700)
T KOG1156|consen 148 GFAVAQHLLGEYKMALEILEEFEKTQNTSPSKED----YEHSELLLYQNQILIEAGSLQKALEHLLDNE--------KQI 215 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHH----HHHHHHHHHHHHHHHHcccHHHHHHHHHhhh--------hHH
Confidence 4455566679999999999999988753322222 4457778888888888887766655544321 122
Q ss_pred HH--HHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 221 MG--IIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 221 ~~--~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
.. .+.+..|.+.+..+++++|...|.--..
T Consensus 216 ~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 216 VDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 21 2345567788888899999877776644
No 163
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.63 E-value=14 Score=37.67 Aligned_cols=116 Identities=10% Similarity=0.076 Sum_probs=84.0
Q ss_pred hHHHHhHHHHHHHHH-hccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhh
Q 014143 134 LWFKTNLKLCKIWFD-MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK-NNKKLKQLYQKALAI 211 (430)
Q Consensus 134 l~~r~~~~La~~~~~-~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~-d~~ka~~~l~~a~~~ 211 (430)
+-.|+.++||.+++. ..+.+-|...|+..-......+.. . ..+.+-+...+.+|.... +++.+|+.+++|..+
T Consensus 44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f-y----dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaiel 118 (629)
T KOG2300|consen 44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF-Y----DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIEL 118 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH-H----hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 334788899999774 578888998888887776554332 1 457888888888888777 899999999999776
Q ss_pred hccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhc
Q 014143 212 KSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (430)
Q Consensus 212 ~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~ 256 (430)
.... |-....+...-+-+|.-++||..|+..+--.++..+...
T Consensus 119 sq~~--p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~ 161 (629)
T KOG2300|consen 119 SQSV--PYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHIC 161 (629)
T ss_pred hcCC--chhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhh
Confidence 6554 344455556667788899999999988544455444444
No 164
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=91.62 E-value=7.4 Score=32.78 Aligned_cols=66 Identities=12% Similarity=0.224 Sum_probs=52.0
Q ss_pred hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 134 l~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
.++.+..+++..+.+.|++++|..+++.+...-+ .-=..+...++.+...|+...|...|+..+..
T Consensus 60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP------------~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 60 LYLDALERLAEALLEAGDYEEALRLLQRALALDP------------YDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST------------T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC------------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4556777999999999999999999999988722 12357777789999999999999999987543
No 165
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=91.55 E-value=0.89 Score=33.30 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=46.2
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 142 La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
|..+|...++|++|.+.+..+...-++ -...+...+.++...|++..|...++.+.+..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~------------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPD------------DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcc------------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467888999999999999999888321 24556667788899999999999988886543
No 166
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=91.37 E-value=0.42 Score=35.99 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=43.3
Q ss_pred HHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEE
Q 014143 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLL 396 (430)
Q Consensus 345 ~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v 396 (430)
-++.++.-+.+.+...||..|+.|++-||.+|.+++.-|++.-.-....|+.
T Consensus 6 qlRd~l~~~gr~s~~~Ls~~~~~p~~~VeaMLe~l~~kGkverv~~~~~gC~ 57 (78)
T PRK15431 6 QVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRIQEEPDGCL 57 (78)
T ss_pred HHHHHHHHcCcccHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccCCCCCC
Confidence 3566777889999999999999999999999999999999865443544554
No 167
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.29 E-value=7.9 Score=34.79 Aligned_cols=60 Identities=15% Similarity=0.217 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
.+|||.+.++.|++++|++.|..++.... .--+--....++...||-..|+..|.+|...
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w-------------~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESW-------------AAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccH-------------HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 45999999999999999999987765522 1112223455788999999999999999754
No 168
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=90.97 E-value=0.24 Score=39.63 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=35.1
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeec
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq 391 (430)
.=|++..|++.|+++.++|+..|-.|+.+|.|+-.||.
T Consensus 64 ~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 101 (102)
T PF08784_consen 64 EGVHVDEIAQQLGMSENEVRKALDFLSNEGHIYSTIDD 101 (102)
T ss_dssp TTEEHHHHHHHSTS-HHHHHHHHHHHHHTTSEEESSST
T ss_pred CcccHHHHHHHhCcCHHHHHHHHHHHHhCCeEecccCC
Confidence 46999999999999999999999999999999999985
No 169
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.88 E-value=7.2 Score=40.62 Aligned_cols=131 Identities=14% Similarity=0.097 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHhcCCCCC
Q 014143 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT-RNYSEKCINNIMDFVSGSASQ 110 (430)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~-k~~~~k~v~~il~~~~~~~~~ 110 (430)
+.+|++.+...-+..+++ .+-++--++++.+.+|+|..+++.+..++..+.+.+. -...-.+|..++.......+
T Consensus 357 ~~ka~e~L~~~~~~~p~~---s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~- 432 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEK---SKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKD- 432 (652)
T ss_pred HhhhHHHHHHHhccCCch---hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccC-
Confidence 556777777665544433 2456667789999999999999999977655434332 22333455555555544333
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhHHHHh-HHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014143 111 NFSLLREFYQTTLKALEEAKNERLWFKTN-LKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (430)
Q Consensus 111 ~~~~~~~~~~~~~e~l~~~~~~kl~~r~~-~~La~~~~~~g~~~~A~~~l~el~~~~~ 167 (430)
......++..+..+.+....++.-+++. ..+|.+.+..|+-++|..+|+++.+...
T Consensus 433 -~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 433 -NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP 489 (652)
T ss_pred -CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC
Confidence 2234455555544444433344444443 4789999999999999999999999743
No 170
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.72 E-value=4.2 Score=36.51 Aligned_cols=98 Identities=14% Similarity=0.146 Sum_probs=74.6
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
.+.+|+-+.+.|++++|..-|+.....+. |+ .++.-.-+..+|+...+|.++.|-..+ +.+.++
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~-----De----~lk~l~~lRLArvq~q~~k~D~AL~~L-------~t~~~~ 155 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTK-----DE----NLKALAALRLARVQLQQKKADAALKTL-------DTIKEE 155 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccch-----hH----HHHHHHHHHHHHHHHHhhhHHHHHHHH-------hccccc
Confidence 56899999999999999999988877654 22 344444456678888888777755544 444455
Q ss_pred hhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 219 ~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
...+.+-...|.+++..||=.+|..-|-.+.+..
T Consensus 156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 156 SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 6666677788999999999999999999998765
No 171
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=90.64 E-value=7.4 Score=32.13 Aligned_cols=100 Identities=10% Similarity=0.015 Sum_probs=74.0
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
.+.+|..+-..|+.++|..++......- . ++ ....+.++.-+..+..+|++.+|...++.+.. ..+++
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L---~~----~~~~~a~i~lastlr~LG~~deA~~~L~~~~~---~~p~~ 71 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAG--L---SG----ADRRRALIQLASTLRNLGRYDEALALLEEALE---EFPDD 71 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC--C---Cc----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCc
Confidence 4577888888999999999999987752 1 12 23446666777888999999999999987753 23443
Q ss_pred hhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 219 ~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
...+.+....+......|++.+|.+.+..++-
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555555566777788999999999988753
No 172
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.56 E-value=2.7 Score=41.72 Aligned_cols=105 Identities=18% Similarity=0.201 Sum_probs=74.6
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcc---hhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014143 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDD---QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (430)
Q Consensus 141 ~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d---~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~ 217 (430)
.-|+.|++.|+|..|..-+......+....+.++ +.....++-.++..+-.|++++.+..|....++++... .
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~----~ 288 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD----P 288 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC----C
Confidence 4577788888888888777776555433222211 11235567788888888999999999888777765432 2
Q ss_pred chhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 218 ~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
+...|-++. |..++..++|..|...|..+.+-
T Consensus 289 ~N~KALyRr--G~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 289 NNVKALYRR--GQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred CchhHHHHH--HHHHHhhccHHHHHHHHHHHHHh
Confidence 345666655 88899999999999999999763
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=90.56 E-value=9.1 Score=33.40 Aligned_cols=69 Identities=14% Similarity=0.068 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 132 (430)
...++..++..+...|+++++.+++.+.++.. |+.+. .
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------------------~~~~~----~--------------- 71 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLE-----------------------EDPND----R--------------- 71 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----------------------hccch----H---------------
Confidence 35678889999999999999999998876642 11000 0
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014143 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~ 166 (430)
......+|.++...|++++|...+.+.....
T Consensus 72 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 72 ---SYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 0123488999999999999999998887763
No 174
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=90.49 E-value=7.3 Score=39.22 Aligned_cols=85 Identities=14% Similarity=0.116 Sum_probs=58.7
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCch
Q 014143 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (430)
Q Consensus 140 ~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~ 219 (430)
..||+++...++-.+|.+++.+...... .-.+++..++++++..+++..|....++|.......
T Consensus 204 ~~LA~v~l~~~~E~~AI~ll~~aL~~~p------------~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~---- 267 (395)
T PF09295_consen 204 VLLARVYLLMNEEVEAIRLLNEALKENP------------QDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSE---- 267 (395)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhCC------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh----
Confidence 4578888877887888888888775532 115677788888888898988888877765443211
Q ss_pred hHHHHHHhhhHhhhhhhcHHHHH
Q 014143 220 IMGIIRECGGKMHMAERQWADAA 242 (430)
Q Consensus 220 ~~~~~~~~~g~~~~~~~~y~~A~ 242 (430)
-..|...+.+|...++|+.|.
T Consensus 268 --f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 268 --FETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred --HHHHHHHHHHHHhcCCHHHHH
Confidence 123444567777888888876
No 175
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.78 E-value=0.57 Score=42.83 Aligned_cols=55 Identities=13% Similarity=0.245 Sum_probs=50.5
Q ss_pred HHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 347 ~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
..|++.-+.|.|.+||..|||-.+++-.-+-.++.+|.+.|.||--.+.|+++..
T Consensus 206 v~YIk~nKvV~ledLas~f~Lrtqd~inriq~~l~eg~ltGVmDDRGKfIYIS~e 260 (299)
T KOG3054|consen 206 VEYIKKNKVVPLEDLASEFGLRTQDSINRIQELLAEGLLTGVMDDRGKFIYISME 260 (299)
T ss_pred HHHHHhcCeeeHHHHHHHhCccHHHHHHHHHHHHHhhhheeeecCCCceEEecHH
Confidence 4567777899999999999999999999999999999999999999999999864
No 176
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.61 E-value=16 Score=36.59 Aligned_cols=197 Identities=15% Similarity=0.150 Sum_probs=120.6
Q ss_pred HHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCCh
Q 014143 33 EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNF 112 (430)
Q Consensus 33 ~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~ 112 (430)
..|+..+..++..... ....+++--.=++++.-.|+++++...-...++. ...++-+-.||..+-++... .
T Consensus 149 anal~~~~~~~~s~s~-~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl----d~~n~~al~vrg~~~yy~~~----~ 219 (486)
T KOG0550|consen 149 ANALPTLEKLAPSHSR-EPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL----DATNAEALYVRGLCLYYNDN----A 219 (486)
T ss_pred hhhhhhhhcccccccC-CchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc----ccchhHHHHhcccccccccc----h
Confidence 3444555555443322 2345666555678999999999998766665554 35556666666666555431 2
Q ss_pred hHHHHHHHHHHHHHHHhhh-hhhHH-----HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHH
Q 014143 113 SLLREFYQTTLKALEEAKN-ERLWF-----KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (430)
Q Consensus 113 ~~~~~~~~~~~e~l~~~~~-~kl~~-----r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l 186 (430)
......++..+..=..+.. +..+. .....-|.-.+..|+|..|.+.+.+-...-+. ...-...+|.
T Consensus 220 ~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--------n~~~naklY~ 291 (486)
T KOG0550|consen 220 DKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--------NKKTNAKLYG 291 (486)
T ss_pred HHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc--------ccchhHHHHH
Confidence 2222333333221111111 11111 23345677788899999999999998877321 1234567788
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 187 IEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 187 ~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
..+.+...+|....|-.-.+.+.++... -+.+ +...|.-|+..++|..|.++|-.+.++-
T Consensus 292 nra~v~~rLgrl~eaisdc~~Al~iD~s----yika--ll~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 292 NRALVNIRLGRLREAISDCNEALKIDSS----YIKA--LLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HhHhhhcccCCchhhhhhhhhhhhcCHH----HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888888999888877776666654321 1222 2345778888999999999999998754
No 177
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=89.41 E-value=3.9 Score=35.58 Aligned_cols=74 Identities=18% Similarity=0.082 Sum_probs=51.0
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEe--eeccCCEEEEccCCccchHHHHHHHHHHHHHHHHHHHhhh
Q 014143 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH--IDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSLYQTVSNR 428 (430)
Q Consensus 352 ~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~--IDq~~g~v~~~~~~~~~~~~~~l~~w~~~v~~l~~~v~~~ 428 (430)
..+-++-++||+.+|++..+|-+.|-+|-.+|.+.-+ =|..+|.....|.-..+...+.+ ..++.++...+..+
T Consensus 25 ~~~~~tdEeLa~~Lgi~~~~VRk~L~~L~e~~Lv~~~r~r~~~~gw~~Y~w~i~~~~i~d~I---k~~~~~~~~~lk~~ 100 (158)
T TIGR00373 25 IKGEFTDEEISLELGIKLNEVRKALYALYDAGLADYKRRKDDETGWYEYTWRINYEKALDVL---KRKLEETAKKLREK 100 (158)
T ss_pred ccCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCceeeeeeecCCCcEEEEEEeCHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3467999999999999999999999999999999532 25555777666643333333333 44455555554444
No 178
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=89.34 E-value=2.8 Score=35.46 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
..+++++|++.+...+..+|-+ ..+...++++|...|+..++++.|..+...+
T Consensus 74 ~~~~~~~a~~~~~~~l~~dP~~----E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 74 EAGDYEEALRLLQRALALDPYD----EEAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HTT-HHHHHHHHHHHHHHSTT-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3567999999999999988743 5788999999999999999999999998877
No 179
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.19 E-value=1.5 Score=33.23 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=47.7
Q ss_pred hhHHHHHHhhcccCCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 014143 15 VSRVLCSILEKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREM 80 (430)
Q Consensus 15 ~~~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l 80 (430)
+++++.+|++ .+.++|+....+++++.++.. -.|+++..+++.|.+.|++.+++++-..=
T Consensus 10 ie~GlkLY~~-----~~~~~Al~~W~~aL~k~~~~~-~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 10 IEKGLKLYHQ-----NETQQALQKWRKALEKITDRE-DRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HHHHHHHhcc-----chHHHHHHHHHHHHhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667654 347899999999999876533 37999999999999999999988765433
No 180
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=88.78 E-value=9.9 Score=41.31 Aligned_cols=119 Identities=10% Similarity=0.011 Sum_probs=83.5
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHH-HHHHHHHHhcCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK-CINNIMDFVSGS 107 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k-~v~~il~~~~~~ 107 (430)
.+.+++|+..+..+++..|+. ..+....+.++.+.++++++++.+.+.+..- +. +.... ..-.++..+..
T Consensus 99 ~g~~~ea~~~l~~~~~~~Pd~----~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~---~~~~~~~~a~~l~~~g~- 169 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQRFPDS----SEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SS---SAREILLEAKSWDEIGQ- 169 (694)
T ss_pred cCCcHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CC---CHHHHHHHHHHHHHhcc-
Confidence 346899999999999998865 5677888999999999999999999998863 32 22222 22223333332
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014143 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (430)
Q Consensus 108 ~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~ 166 (430)
.+.....|+.++. +...+. ...+.+|..+...|+.++|...+...-...
T Consensus 170 ----~~~A~~~y~~~~~--~~p~~~----~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 170 ----SEQADACFERLSR--QHPEFE----NGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred ----hHHHHHHHHHHHh--cCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 4445666666654 111112 234588999999999999999998887774
No 181
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.76 E-value=0.79 Score=27.62 Aligned_cols=29 Identities=28% Similarity=0.685 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
++-+++.++.+.|+++++.+.++.++..+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 56789999999999999999999998876
No 182
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=88.54 E-value=1.1 Score=30.11 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=33.1
Q ss_pred HHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcee
Q 014143 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 345 ~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
.++.++.--..++..+||+.+|+|..-|-..+-+|...|.|.
T Consensus 7 ~Il~~l~~~~~~t~~ela~~~~is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 7 KILNYLRENPRITQKELAEKLGISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCcCcC
Confidence 344455445669999999999999999999999999999874
No 183
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.47 E-value=0.57 Score=29.26 Aligned_cols=32 Identities=22% Similarity=0.589 Sum_probs=27.0
Q ss_pred HHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHH
Q 014143 39 FAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMM 74 (430)
Q Consensus 39 ~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~ 74 (430)
|++.|+.+|++ ..++.+++.+|...|+++++.
T Consensus 2 y~kAie~~P~n----~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNN----AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCC----HHHHHHHHHHHHHCcCHHhhc
Confidence 56777777765 788999999999999999875
No 184
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=88.06 E-value=7.4 Score=38.90 Aligned_cols=178 Identities=15% Similarity=0.088 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCC
Q 014143 32 PEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (430)
Q Consensus 32 ~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (430)
.+.|.+.|+.-++.-. .+....-|++..++.-|+-.|+++.++.+-+.=+.+-+.--.+++--..-.++....-=.
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl-- 248 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL-- 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh--
Confidence 4567778877766543 344556789999999999999999999876655554311122332222222222211000
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHH
Q 014143 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (430)
Q Consensus 110 ~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~ 189 (430)
.+.+...+.|..++.....-.+...-....+-||..|.-..++++|..+-+.=...-... .|. .--..-+-...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL---~Dr---iGe~RacwSLg 322 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL---EDR---IGELRACWSLG 322 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHh---hhhHHHHHHHH
Confidence 135566777777766544333333444556788888888888888876544333321111 111 11122222333
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014143 190 QMYTETKNNKKLKQLYQKALAIKSAIPH 217 (430)
Q Consensus 190 ~l~~~~~d~~ka~~~l~~a~~~~~~~~~ 217 (430)
..+.++++..+|--+....+.+...+.|
T Consensus 323 na~~alg~h~kAl~fae~hl~~s~ev~D 350 (639)
T KOG1130|consen 323 NAFNALGEHRKALYFAELHLRSSLEVND 350 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 4556666677766665555544444444
No 185
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=88.00 E-value=50 Score=36.95 Aligned_cols=137 Identities=18% Similarity=0.239 Sum_probs=81.4
Q ss_pred hhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHH-H------------HHHHHhcCCCCCChhHHH
Q 014143 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI-N------------NIMDFVSGSASQNFSLLR 116 (430)
Q Consensus 50 ~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v-~------------~il~~~~~~~~~~~~~~~ 116 (430)
....+.+..+++..+...|+++++.+.+...+... +.-...+.-..+ . .+++.+...+ +.....
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~--~~~~ve 103 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNL--KWAIVE 103 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhhhhhhhccccc--chhHHH
Confidence 34568999999999999999999999999887776 432222222222 0 2222222111 111222
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhc
Q 014143 117 EFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK 196 (430)
Q Consensus 117 ~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~ 196 (430)
.++..+++ ..+.+. ....||..|-..|++++|...+.++...-.+ + ...+..++. .+...
T Consensus 104 ~~~~~i~~----~~~~k~---Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-----n----~~aLNn~AY---~~ae~- 163 (906)
T PRK14720 104 HICDKILL----YGENKL---ALRTLAEAYAKLNENKKLKGVWERLVKADRD-----N----PEIVKKLAT---SYEEE- 163 (906)
T ss_pred HHHHHHHh----hhhhhH---HHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-----c----HHHHHHHHH---HHHHh-
Confidence 22222222 122221 3457888999999999999999999988431 2 222232222 33344
Q ss_pred CHHHHHHHHHHHH
Q 014143 197 NNKKLKQLYQKAL 209 (430)
Q Consensus 197 d~~ka~~~l~~a~ 209 (430)
|.++|..++.+|.
T Consensus 164 dL~KA~~m~~KAV 176 (906)
T PRK14720 164 DKEKAITYLKKAI 176 (906)
T ss_pred hHHHHHHHHHHHH
Confidence 8999999988874
No 186
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.73 E-value=24 Score=33.00 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=19.9
Q ss_pred chHHHHHHHHHHhhCCHHHHHHHHHH
Q 014143 294 EILAMTNLIAAYQRNEIIEFEKILKS 319 (430)
Q Consensus 294 ~~~~l~~L~~af~~~dl~~f~~~l~~ 319 (430)
+...+.+|+.+|..+|...+.+++..
T Consensus 227 d~r~lenLL~ayd~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 227 DSRSLENLLTAYDEGDIEEIKKVLSS 252 (308)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHcC
Confidence 45667788888888888888876654
No 187
>PRK15331 chaperone protein SicA; Provisional
Probab=87.65 E-value=18 Score=31.55 Aligned_cols=94 Identities=15% Similarity=0.054 Sum_probs=70.1
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCch
Q 014143 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (430)
Q Consensus 140 ~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~ 219 (430)
...|.=++..|+|++|..+.+-+-.. | ..--++++-.+-.+..+++|.+|-..|-.|-.+.. .||+
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d----~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp~ 106 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIY--------D----FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDYR 106 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--------C----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCCC
Confidence 47777888999999999888877665 2 11234566667778899999999999988765443 3333
Q ss_pred hHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 220 IMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 220 ~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
- ..+.|.-++..|+-..|...|..+.+.
T Consensus 107 p----~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 107 P----VFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred c----cchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 2 234577788889999999999999774
No 188
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=87.56 E-value=17 Score=31.00 Aligned_cols=85 Identities=12% Similarity=0.099 Sum_probs=56.1
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchh
Q 014143 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (430)
Q Consensus 141 ~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~ 220 (430)
+-|.-.++.|+|.+|.+.++.|..-.... ...-...+..+..|+..+++..|...+++=.+.... ||.+
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g---------~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~--hp~v 83 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFG---------EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT--HPNV 83 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCC---------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CCCc
Confidence 55666778899999999999999876432 122345556778899999999999988876554332 3332
Q ss_pred HHHHHHhhhHhhhhhhc
Q 014143 221 MGIIRECGGKMHMAERQ 237 (430)
Q Consensus 221 ~~~~~~~~g~~~~~~~~ 237 (430)
-- .+...|..++....
T Consensus 84 dY-a~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 84 DY-AYYMRGLSYYEQDE 99 (142)
T ss_pred cH-HHHHHHHHHHHHhh
Confidence 21 22334555554443
No 189
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.50 E-value=23 Score=34.05 Aligned_cols=182 Identities=15% Similarity=0.156 Sum_probs=99.2
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHhcC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT--RNYSEKCINNIMDFVSG 106 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~--k~~~~k~v~~il~~~~~ 106 (430)
+..+..||+.+..-.+..+. +.-.+.-++-+|+...++..+.++|.++...+ |... +-+-+.++=+..-.-+
T Consensus 23 d~ry~DaI~~l~s~~Er~p~----~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~-P~~~qYrlY~AQSLY~A~i~AD- 96 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPR----SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH-PELEQYRLYQAQSLYKACIYAD- 96 (459)
T ss_pred HhhHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHHHHHhcccHH-
Confidence 44588999998887655442 24578889999999999999999999998876 5422 2222222211111000
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHH
Q 014143 107 SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (430)
Q Consensus 107 ~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l 186 (430)
...+.....+ ++.+.-++..--+.|.++.||+..+..++..+..+- + .+.+.
T Consensus 97 --------ALrV~~~~~D------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en-------~-------Ad~~i 148 (459)
T KOG4340|consen 97 --------ALRVAFLLLD------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN-------E-------ADGQI 148 (459)
T ss_pred --------HHHHHHHhcC------CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC-------c-------cchhc
Confidence 0001111100 111221222234556777777777776666654331 1 11222
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 187 IEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 187 ~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
...-+.+..|++..|-.-+..|..+.. +.|-+ -.--+..|...|+|..|.++-.|..+
T Consensus 149 n~gCllykegqyEaAvqkFqaAlqvsG--yqpll----AYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 149 NLGCLLYKEGQYEAAVQKFQAALQVSG--YQPLL----AYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred cchheeeccccHHHHHHHHHHHHhhcC--CCchh----HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 233344566777776666665554321 22221 11124456677788888888777754
No 190
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=87.49 E-value=20 Score=38.50 Aligned_cols=101 Identities=12% Similarity=0.159 Sum_probs=51.6
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHH----hhhhhhH
Q 014143 60 TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE----AKNERLW 135 (430)
Q Consensus 60 l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~----~~~~kl~ 135 (430)
-+.-+.+.|++|.++.+|..-.-.. ..+.-+-.++--...+..++++++ .......|..+-+.-.. -..+++|
T Consensus 712 wg~hl~~~~q~daainhfiea~~~~-kaieaai~akew~kai~ildniqd--qk~~s~yy~~iadhyan~~dfe~ae~lf 788 (1636)
T KOG3616|consen 712 WGDHLEQIGQLDAAINHFIEANCLI-KAIEAAIGAKEWKKAISILDNIQD--QKTASGYYGEIADHYANKGDFEIAEELF 788 (1636)
T ss_pred HhHHHHHHHhHHHHHHHHHHhhhHH-HHHHHHhhhhhhhhhHhHHHHhhh--hccccccchHHHHHhccchhHHHHHHHH
Confidence 3566778888999988887544433 222222222222223333332233 12233444444332111 1234455
Q ss_pred HH--HhHHHHHHHHHhccHHHHHHHHHHHH
Q 014143 136 FK--TNLKLCKIWFDMGEYGRMSKILKELH 163 (430)
Q Consensus 136 ~r--~~~~La~~~~~~g~~~~A~~~l~el~ 163 (430)
.. ....-..+|-+.|.|..|.++-.+.+
T Consensus 789 ~e~~~~~dai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 789 TEADLFKDAIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred HhcchhHHHHHHHhccccHHHHHHHHHHhc
Confidence 52 23355567778888988887766554
No 191
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.44 E-value=33 Score=34.26 Aligned_cols=112 Identities=14% Similarity=0.193 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhH
Q 014143 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLW 135 (430)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~ 135 (430)
-.+.-|..|++.|+|..+...|...+.+++.. .. .+ .+.... -..+-
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~-----------------~~-~~--~ee~~~-------------~~~~k 256 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYR-----------------RS-FD--EEEQKK-------------AEALK 256 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhcc-----------------cc-CC--HHHHHH-------------HHHHH
Confidence 34455789999999999999999888876221 00 11 100000 11223
Q ss_pred HHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 136 ~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
+.+.++||-.++..++|.+|...-..+...- . ... .-+....+.++.++++..|+..+.++.++.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-------~---~N~--KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-------P---NNV--KALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-------C---Cch--hHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 3567799999999999999988777776661 1 122 334477889999999999999999997653
No 192
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=87.26 E-value=6.2 Score=35.04 Aligned_cols=100 Identities=11% Similarity=0.114 Sum_probs=62.4
Q ss_pred cCChhHHHHHHHHH--HHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEee--eccCCEEEEcc
Q 014143 325 MDDPFIRNYIEDLL--KNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHI--DQVNRLLERGD 400 (430)
Q Consensus 325 ~~D~~l~~~~~~L~--~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~I--Dq~~g~v~~~~ 400 (430)
..||.++..+..+. ..-.. .++..+.....+|-++||+.+|++..+|-+.|.+|-.+|.+..+- |...|.....|
T Consensus 5 ~~~~~v~~~l~~~~~~~~~~~-~Vl~~L~~~g~~tdeeLA~~Lgi~~~~VRk~L~~L~e~gLv~~~r~r~~~~Gr~~y~w 83 (178)
T PRK06266 5 LNNPLVQKVLFEIMEGDEEGF-EVLKALIKKGEVTDEEIAEQTGIKLNTVRKILYKLYDARLADYKREKDEETNWYTYTW 83 (178)
T ss_pred hcCHHHHHHHHHHhcCCccHh-HHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEeeeeccCCCcEEEEE
Confidence 35666665444443 11111 223334445689999999999999999999999999999997433 33467676666
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHhhh
Q 014143 401 RSKGMKKYTAIDKWNSQLRSLYQTVSNR 428 (430)
Q Consensus 401 ~~~~~~~~~~l~~w~~~v~~l~~~v~~~ 428 (430)
.-..+...+.+ -.++.++...+.++
T Consensus 84 ~l~~~~i~d~i---k~~~~~~~~klk~~ 108 (178)
T PRK06266 84 KPELEKLPEII---KKKKMEELKKLKEQ 108 (178)
T ss_pred EeCHHHHHHHH---HHHHHHHHHHHHHH
Confidence 54333344443 33445555555444
No 193
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.95 E-value=2 Score=26.00 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
+++..+|.++...|+++++.+++++.+..-
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 567889999999999999999999998764
No 194
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=86.78 E-value=10 Score=38.14 Aligned_cols=115 Identities=15% Similarity=0.197 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCC
Q 014143 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (430)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (430)
..++.|++.|+++.+.+++ +..-+++++...++-.++++.+.+.++.. +. . ..++..-.+++-...
T Consensus 183 ~~~~~ai~lle~L~~~~pe-------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~-d----~~LL~~Qa~fLl~k~- 248 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE-------VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQ-D----SELLNLQAEFLLSKK- 248 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc-------HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CC-C----HHHHHHHHHHHHhcC-
Confidence 3578899999998776643 22347888888888888888888887653 21 1 333333333332211
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhh-hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014143 110 QNFSLLREFYQTTLKALEEAKNER-LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (430)
Q Consensus 110 ~~~~~~~~~~~~~~e~l~~~~~~k-l~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~ 166 (430)
-++.+++..+.+.+-. --++.-..||+.|...|+|++|+-.|..+...+
T Consensus 249 --------~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 --------KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred --------CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 2244444444321111 223445578999999999999998887766553
No 195
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=86.29 E-value=29 Score=34.88 Aligned_cols=133 Identities=14% Similarity=0.115 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 014143 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (430)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~k 133 (430)
.+++.-++..|-..|+..+++-.-....+.+ + ..+++-+.+-..+-.. .|. ..+..++|++..+. -+-
T Consensus 368 L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~--~sA~~LtL~g~~V~~~--dp~-~rEKAKkf~ek~L~------~~P 435 (564)
T KOG1174|consen 368 LEIYRGLFHSYLAQKRFKEANALANWTIRLF-Q--NSARSLTLFGTLVLFP--DPR-MREKAKKFAEKSLK------INP 435 (564)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-h--cchhhhhhhcceeecc--Cch-hHHHHHHHHHhhhc------cCC
Confidence 4455555666666666666665555554444 2 2222222221111111 121 23445666666544 223
Q ss_pred hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 134 l~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
.|+..-..+|++..-.|.+.++..+|..-..... |+ . +-. ....+..+.+.+.+|-..|..|..+
T Consensus 436 ~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-----D~----~--LH~--~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 436 IYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-----DV----N--LHN--HLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred ccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-----cc----H--HHH--HHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5666667999999999999999999988877643 22 1 122 2234555667777777777777643
No 196
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=86.23 E-value=2.3 Score=30.00 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=41.1
Q ss_pred HHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEE
Q 014143 344 QVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (430)
Q Consensus 344 ~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (430)
..|+.+++.-..++++++|+.||+|..-+..-+..|-..|. |.+.-|-+.+
T Consensus 3 ~~Il~~l~~~~~~s~~ela~~~~VS~~TiRRDl~~L~~~g~----i~r~~GG~~~ 53 (57)
T PF08220_consen 3 QQILELLKEKGKVSVKELAEEFGVSEMTIRRDLNKLEKQGL----IKRTHGGAVL 53 (57)
T ss_pred HHHHHHHHHcCCEEHHHHHHHHCcCHHHHHHHHHHHHHCCC----EEEEcCEEEe
Confidence 45667777789999999999999999999999999998886 4444444443
No 197
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=86.17 E-value=1.6 Score=32.01 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=35.4
Q ss_pred HHHHhcccccc--cchhhHHhHhCCChHHHHHHHHHhhhcCceeE
Q 014143 345 VLLKLIKPYTR--IRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (430)
Q Consensus 345 ~l~~i~~~Y~~--I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g 387 (430)
.++.++..-.. ++..+||+.+|++...|...|.+|...|.+.-
T Consensus 10 ~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~~ 54 (68)
T smart00550 10 KILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKGKVCK 54 (68)
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 44455544434 99999999999999999999999999998854
No 198
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.06 E-value=22 Score=38.30 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=47.8
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
++..+-...-....+|.+|..++..++..-+ -..+|-+.+.-|...|++..|..+++++-.+
T Consensus 733 ~~~~kaieaai~akew~kai~ildniqdqk~-------------~s~yy~~iadhyan~~dfe~ae~lf~e~~~~ 794 (1636)
T KOG3616|consen 733 NCLIKAIEAAIGAKEWKKAISILDNIQDQKT-------------ASGYYGEIADHYANKGDFEIAEELFTEADLF 794 (1636)
T ss_pred hhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc-------------ccccchHHHHHhccchhHHHHHHHHHhcchh
Confidence 6666666667777889999999998876522 2346777788899999999999999887433
No 199
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=85.82 E-value=27 Score=35.06 Aligned_cols=166 Identities=13% Similarity=0.114 Sum_probs=105.9
Q ss_pred CCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCC
Q 014143 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (430)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (430)
+++++|+..-..|++.++.+ ..++.-=+.+++..++.+.++.++++-+..= +.-.++..+-+.-..++.-.. .+
T Consensus 183 ~~~~~a~~ea~~ilkld~~n----~~al~vrg~~~yy~~~~~ka~~hf~qal~ld-pdh~~sk~~~~~~k~le~~k~-~g 256 (486)
T KOG0550|consen 183 GDYDEAQSEAIDILKLDATN----AEALYVRGLCLYYNDNADKAINHFQQALRLD-PDHQKSKSASMMPKKLEVKKE-RG 256 (486)
T ss_pred ccchhHHHHHHHHHhcccch----hHHHHhcccccccccchHHHHHHHhhhhccC-hhhhhHHhHhhhHHHHHHHHh-hh
Confidence 45677777777777776532 3344445678888899999999999888764 443444444444444443332 11
Q ss_pred CChhHHHHHHHHH----HHHHHHh-hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHH
Q 014143 110 QNFSLLREFYQTT----LKALEEA-KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (430)
Q Consensus 110 ~~~~~~~~~~~~~----~e~l~~~-~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~ 184 (430)
|..+..-.|..+ .+.|.-- .+.+.-.++..+.|......|...+|..--.+..+. | ...+.-
T Consensus 257 -N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D----~syika 323 (486)
T KOG0550|consen 257 -NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------D----SSYIKA 323 (486)
T ss_pred -hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------C----HHHHHH
Confidence 111222222222 2222211 244455577777788888888888887766666555 3 346788
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014143 185 YAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (430)
Q Consensus 185 ~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~ 214 (430)
++..++.++.+++|..|.+.+++|.+....
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 889999999999999999999999765443
No 200
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=85.48 E-value=66 Score=37.40 Aligned_cols=162 Identities=12% Similarity=0.174 Sum_probs=96.5
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc--CCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhH
Q 014143 63 LYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVS--GSASQNFSLLREFYQTTLKALEEAKNERLWFKTNL 140 (430)
Q Consensus 63 l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~--~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~ 140 (430)
...+.++.+++.+.....++-+ +--.-++-.+--+.++. ..-+ ..+.+.+.++.+....+. .++..
T Consensus 1467 f~LelsEiekAR~iaerAL~tI----N~REeeEKLNiWiA~lNlEn~yG-~eesl~kVFeRAcqycd~-------~~V~~ 1534 (1710)
T KOG1070|consen 1467 FHLELSEIEKARKIAERALKTI----NFREEEEKLNIWIAYLNLENAYG-TEESLKKVFERACQYCDA-------YTVHL 1534 (1710)
T ss_pred HHhhhhhhHHHHHHHHHHhhhC----CcchhHHHHHHHHHHHhHHHhhC-cHHHHHHHHHHHHHhcch-------HHHHH
Confidence 3456677778887777776654 33333333444333321 1001 134556666665554222 25677
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchh
Q 014143 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (430)
Q Consensus 141 ~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~ 220 (430)
+|+.+|...+++++|.++|+.+.+.+.. ...++..-+...+..++-..|+.++.+|.+....-.|-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q------------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQ------------TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcc------------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 9999999999999999999999988641 2334444445666777788999999999866543222221
Q ss_pred HHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 221 MGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 221 ~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
. ...+.+-+..||-..+...|-.....|
T Consensus 1603 I----skfAqLEFk~GDaeRGRtlfEgll~ay 1630 (1710)
T KOG1070|consen 1603 I----SKFAQLEFKYGDAERGRTLFEGLLSAY 1630 (1710)
T ss_pred H----HHHHHHHhhcCCchhhHHHHHHHHhhC
Confidence 1 122444445556666666665555444
No 201
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=85.30 E-value=23 Score=33.16 Aligned_cols=120 Identities=16% Similarity=0.098 Sum_probs=63.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHh
Q 014143 60 TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTN 139 (430)
Q Consensus 60 l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~ 139 (430)
.++..+..|++.++...+.+....- +.-.+......+ +++.... .+....-|...++. ..++. .+.
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga--aldq~Gr-----~~~Ar~ay~qAl~L---~~~~p---~~~ 171 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA--ALDQLGR-----FDEARRAYRQALEL---APNEP---SIA 171 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH--HHHHccC-----hhHHHHHHHHHHHh---ccCCc---hhh
Confidence 5666666666666666666665543 322222222221 3333322 22223333333332 11111 123
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHH
Q 014143 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLY 205 (430)
Q Consensus 140 ~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l 205 (430)
.+||-.+.-.||+..|..+|......-. .| ..+.-..+.+....||+..|+.+.
T Consensus 172 nNlgms~~L~gd~~~A~~lll~a~l~~~-----ad-------~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 172 NNLGMSLLLRGDLEDAETLLLPAYLSPA-----AD-------SRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhCCC-----Cc-------hHHHHHHHHHHhhcCChHHHHhhc
Confidence 4888999999999999999988876622 12 122223345666788888887753
No 202
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.20 E-value=2.8 Score=25.53 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
+++..+|.+|...|+++++++.+++.++.-
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 577899999999999999999999988763
No 203
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.12 E-value=2.5 Score=26.79 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
..++.+++.+|...|+++++.+++.+.+...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4688999999999999999999999998876
No 204
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.99 E-value=2.8 Score=25.44 Aligned_cols=30 Identities=27% Similarity=0.485 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
+++..++.+|.+.|+++++.+++++.++.-
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 567889999999999999999999998864
No 205
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=84.81 E-value=42 Score=33.00 Aligned_cols=168 Identities=17% Similarity=0.140 Sum_probs=87.1
Q ss_pred cCCCCHHHHHHHHHHhhcCCccchh---hh--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh--hhhhH
Q 014143 27 LVETDPEGALAGFAEVVAMEPEKAE---WG--------FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV--TRNYS 93 (430)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~---~~--------~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~--~k~~~ 93 (430)
++++.+++|+.-|..+++.+++.+. .. -..+.+.++-++-.||+..++++++++++.- +-- ....-
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~R 195 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQAR 195 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHH
Confidence 3566788888888888887763211 00 1123333455566677777777777776642 110 01111
Q ss_pred HHHHHHHHHHhcCCCCCChhHHHHHHHHHHH--HHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCC
Q 014143 94 EKCINNIMDFVSGSASQNFSLLREFYQTTLK--ALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDG 171 (430)
Q Consensus 94 ~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e--~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~ 171 (430)
+++. +.. .+ .+... .-.+. .+.. .+. ....+++++++..|+...++..+++..+.-++ +
T Consensus 196 akc~------i~~-~e----~k~AI-~Dlk~askLs~-DnT----e~~ykis~L~Y~vgd~~~sL~~iRECLKldpd--H 256 (504)
T KOG0624|consen 196 AKCY------IAE-GE----PKKAI-HDLKQASKLSQ-DNT----EGHYKISQLLYTVGDAENSLKEIRECLKLDPD--H 256 (504)
T ss_pred HHHH------Hhc-Cc----HHHHH-HHHHHHHhccc-cch----HHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc--h
Confidence 1111 000 00 01111 00000 0000 000 22347889999999999999888888876221 0
Q ss_pred Cc--chhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014143 172 TD--DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (430)
Q Consensus 172 ~~--d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~ 214 (430)
.. .-.++.-++.-.+.-+.-....++|..+-+...+..+....
T Consensus 257 K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~ 301 (504)
T KOG0624|consen 257 KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE 301 (504)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc
Confidence 00 00012234555556666677778888887777766554433
No 206
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.63 E-value=2.1 Score=25.65 Aligned_cols=29 Identities=17% Similarity=0.482 Sum_probs=25.6
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~ 167 (430)
.+++|.++...|++++|.+.++++....+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 45899999999999999999999988754
No 207
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=84.25 E-value=1.7 Score=27.34 Aligned_cols=27 Identities=15% Similarity=0.274 Sum_probs=22.7
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014143 140 LKLCKIWFDMGEYGRMSKILKELHKSC 166 (430)
Q Consensus 140 ~~La~~~~~~g~~~~A~~~l~el~~~~ 166 (430)
..||.+|.+.|+|++|.+++++.....
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 489999999999999999999976554
No 208
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.65 E-value=26 Score=34.53 Aligned_cols=59 Identities=19% Similarity=0.185 Sum_probs=40.4
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 014143 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (430)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a 208 (430)
+.+.+|.-++..|||++|+..+.-+.... + ....+.+.+.. .++-+|.|.+|+++-.+|
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-------~---~~~el~vnLAc--c~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMNKD-------D---APAELGVNLAC--CKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhccC-------C---CCcccchhHHH--HHHHHHHHHHHHHHHhhC
Confidence 34578888999999999999988887752 2 12344555553 344567788888776554
No 209
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=83.53 E-value=5.2 Score=33.05 Aligned_cols=63 Identities=21% Similarity=0.132 Sum_probs=48.5
Q ss_pred HHhhcccC-CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 21 SILEKGLV-ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 21 ~~~ak~~~-~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
|..|-.+. .+++++|+..|.+.++...+ +.-..+++.+++..+...|+++++...++..+..+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~-~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~ 68 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLS-GADRRRALIQLASTLRNLGRYDEALALLEEALEEF 68 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 33343333 34699999999999886433 23357899999999999999999999998887655
No 210
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=83.43 E-value=8.5 Score=29.29 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=35.9
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCC
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (430)
.++..+||+.+++|+..+++.+.+|...|.|...=-+. |-....+++
T Consensus 25 ~~s~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~~G~~-GGy~L~~~~ 71 (83)
T PF02082_consen 25 PVSSKEIAERLGISPSYLRKILQKLKKAGLIESSRGRG-GGYRLARPP 71 (83)
T ss_dssp -BEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETSTT-SEEEESS-C
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHhhCCeeEecCCCC-CceeecCCH
Confidence 49999999999999999999999999999987654443 444444433
No 211
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=82.72 E-value=52 Score=32.41 Aligned_cols=63 Identities=21% Similarity=0.323 Sum_probs=37.6
Q ss_pred HHHHHHhhcccC-CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014143 17 RVLCSILEKGLV-ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (430)
Q Consensus 17 ~~~~~~~ak~~~-~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (430)
...-+.-++.+. .+.+..|+..|+..|+.+|+. ..++-.=+.+|...|+..-++.-+...+..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~----Y~aifrRaT~yLAmGksk~al~Dl~rVlel 101 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNN----YQAIFRRATVYLAMGKSKAALQDLSRVLEL 101 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh----HHHHHHHHHHHhhhcCCccchhhHHHHHhc
Confidence 344555556554 445899999999999988754 334444445555555555554444444443
No 212
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=82.40 E-value=4.2 Score=28.72 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=34.2
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g 394 (430)
.++..+||+.++++..-+-..|.+|+..|.|.-.-|..++
T Consensus 21 ~~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r~~~~~D~ 60 (62)
T PF12802_consen 21 ELTQSELAERLGISKSTVSRIVKRLEKKGLVERERDPGDR 60 (62)
T ss_dssp GEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE-SSST
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence 4999999999999999999999999999999877666554
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.11 E-value=47 Score=31.51 Aligned_cols=104 Identities=12% Similarity=0.111 Sum_probs=72.9
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014143 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (430)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~ 216 (430)
++..-++.++.-.|+|.-..+.+.++.+.-. ...-.+..-.+++....||...|+.+.+...+.++...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~-----------e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~ 246 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYP-----------EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD 246 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCC-----------cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh
Confidence 5556788888888999999999999988521 11223444557888899999999999997766555443
Q ss_pred CchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 217 ~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
.-.-...+-.-++.+|...+||..|.+.|-++.+.
T Consensus 247 ~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~ 281 (366)
T KOG2796|consen 247 GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM 281 (366)
T ss_pred ccchhHHHHhhhhhheecccchHHHHHHHhhcccc
Confidence 21111122334567788899999999998887653
No 214
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.35 E-value=3.3 Score=26.25 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=24.8
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhccCC
Q 014143 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQRE 169 (430)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~ 169 (430)
+...||..|...|++++|.+++++........
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 45689999999999999999999988776544
No 215
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.35 E-value=70 Score=33.00 Aligned_cols=149 Identities=17% Similarity=0.236 Sum_probs=91.4
Q ss_pred hhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhh------------hHHHHHHHHHHHhcCCC---C-----
Q 014143 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN------------YSEKCINNIMDFVSGSA---S----- 109 (430)
Q Consensus 50 ~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~------------~~~k~v~~il~~~~~~~---~----- 109 (430)
.+....++..-|..++=.|++-++.+.++..++.. +..++. ..+++.+-.-+..+-.| +
T Consensus 322 le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHR 400 (606)
T KOG0547|consen 322 LEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHR 400 (606)
T ss_pred HHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhH
Confidence 34557788888899999999999999999888876 544332 22222222222211112 1
Q ss_pred CChhHHHHHHHHHHHHHHHh---hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHH
Q 014143 110 QNFSLLREFYQTTLKALEEA---KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (430)
Q Consensus 110 ~~~~~~~~~~~~~~e~l~~~---~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l 186 (430)
..+.++...|+-+..-.+.+ ..+.++ -.+.|+-..+.++.++++....++..+.+++ ..|+|.
T Consensus 401 gQm~flL~q~e~A~aDF~Kai~L~pe~~~--~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~------------~~Evy~ 466 (606)
T KOG0547|consen 401 GQMRFLLQQYEEAIADFQKAISLDPENAY--AYIQLCCALYRQHKIAESMKTFEEAKKKFPN------------CPEVYN 466 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------------CchHHH
Confidence 01223333333333333322 111122 2336777777888888888888888888753 346777
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 014143 187 IEIQMYTETKNNKKLKQLYQKALAIKS 213 (430)
Q Consensus 187 ~~~~l~~~~~d~~ka~~~l~~a~~~~~ 213 (430)
.-+++...++++.+|...|+.|...-+
T Consensus 467 ~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 467 LFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 777788888999999999998865433
No 216
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=81.07 E-value=15 Score=28.33 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=34.9
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccC
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN 393 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~ 393 (430)
..++.++||+.++++...+-..|.+|...|.|.-.-|..+
T Consensus 23 ~~~~~~~la~~~~~s~~~i~~~l~~L~~~g~v~~~~~~~~ 62 (101)
T smart00347 23 GPLSVSELAKRLGVSPSTVTRVLDRLEKKGLIRRLPSPED 62 (101)
T ss_pred CCcCHHHHHHHHCCCchhHHHHHHHHHHCCCeEecCCCCC
Confidence 4689999999999999999999999999999976655443
No 217
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=81.05 E-value=13 Score=34.33 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=53.4
Q ss_pred HHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCCccchHHHHHHHHHHHHHHHHHHHh
Q 014143 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSLYQTVS 426 (430)
Q Consensus 347 ~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~~w~~~v~~l~~~v~ 426 (430)
..+...--++.-++||..+|++++-|-..+-+|+.+|.++- +..|.-.++++ -.+-+.+|..+++.-.+.++
T Consensus 17 ~ei~~~qp~v~q~eIA~~lgiT~QaVsehiK~Lv~eG~i~~---~gR~~Y~iTkk-----G~e~l~~~~~dlr~f~~ev~ 88 (260)
T COG1497 17 SEIAVRQPRVKQKEIAKKLGITLQAVSEHIKELVKEGLIEK---EGRGEYEITKK-----GAEWLLEQLSDLRRFSEEVE 88 (260)
T ss_pred HHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHHHhccceee---cCCeeEEEehh-----HHHHHHHHHHHHHHHHHHHH
Confidence 33444446788999999999999999999999999988764 33344555554 35777778888877776663
No 218
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.66 E-value=2.1 Score=28.55 Aligned_cols=27 Identities=22% Similarity=0.546 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKS 165 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~ 165 (430)
.+.||..|.+.||++.|.++|.++...
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 358999999999999999999999854
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=80.57 E-value=42 Score=32.16 Aligned_cols=117 Identities=14% Similarity=0.173 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHHHHHHh-hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHH--HH
Q 014143 112 FSLLREFYQTTLKALEEA-KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA--IE 188 (430)
Q Consensus 112 ~~~~~~~~~~~~e~l~~~-~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l--~~ 188 (430)
.+....++......++.. ++.+-| ..||.+|...|++..|..-+.+-.....+ ..++.+ .+
T Consensus 135 ~~~~~~l~a~Le~~L~~nP~d~egW----~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~------------n~~~~~g~ae 198 (287)
T COG4235 135 EQEMEALIARLETHLQQNPGDAEGW----DLLGRAYMALGRASDALLAYRNALRLAGD------------NPEILLGLAE 198 (287)
T ss_pred cccHHHHHHHHHHHHHhCCCCchhH----HHHHHHHHHhcchhHHHHHHHHHHHhCCC------------CHHHHHHHHH
Confidence 344667777777777764 444555 37899999999999999999999888432 123333 33
Q ss_pred HHHHHhh-cCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 189 IQMYTET-KNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 189 ~~l~~~~-~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
+.++..- .+..+++..++++.+... ..+.+..++ |.-.+.+++|..|...+-.-..
T Consensus 199 aL~~~a~~~~ta~a~~ll~~al~~D~----~~iral~lL--A~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 199 ALYYQAGQQMTAKARALLRQALALDP----ANIRALSLL--AFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHhcCCcccHHHHHHHHHHHhcCC----ccHHHHHHH--HHHHHHcccHHHHHHHHHHHHh
Confidence 4444443 357899999999875422 233443333 7778899999999987766654
No 220
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.20 E-value=31 Score=33.06 Aligned_cols=91 Identities=13% Similarity=0.111 Sum_probs=66.4
Q ss_pred HHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHH
Q 014143 143 CKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMG 222 (430)
Q Consensus 143 a~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~ 222 (430)
|.=..+.++|++|...+.+.-..+.+ +. =+|..-+..|..+|.+..|-.-..+|..+ ||+.-
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~-----nA-------VyycNRAAAy~~Lg~~~~AVkDce~Al~i-----Dp~ys- 149 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPT-----NA-------VYYCNRAAAYSKLGEYEDAVKDCESALSI-----DPHYS- 149 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCC-----cc-------hHHHHHHHHHHHhcchHHHHHHHHHHHhc-----ChHHH-
Confidence 34445668899999999888888542 21 25556678899999999987776666543 45432
Q ss_pred HHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 223 IIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 223 ~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
+-|.-.|..+...|+|..|...|..+++-
T Consensus 150 kay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 150 KAYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 34455589999999999999999988764
No 221
>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.07 E-value=5.4 Score=33.73 Aligned_cols=82 Identities=13% Similarity=0.198 Sum_probs=50.9
Q ss_pred cchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHH
Q 014143 293 PEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDV 372 (430)
Q Consensus 293 ~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~ev 372 (430)
|++...-.+-+-.-+.|+...-+.++.|+..-...+. +..|++.-+.+...-+...|++|...++|-.+|+|++++
T Consensus 74 ~El~aaWgiGQkiWq~Df~GiYeaI~~~dWSeeak~i----maAf~D~~~kR~FaLl~qAYssI~~~D~A~FlGl~~ddA 149 (197)
T KOG4414|consen 74 PELGAAWGIGQKIWQHDFAGIYEAINAHDWSEEAKDI----MAAFRDATRKRAFALLLQAYSSIIADDFAAFLGLPEDDA 149 (197)
T ss_pred chhhhhhhhhHHHHhcccchHHHHHhhhcchHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 3333333344444455555555555555422111222 344555566667777788999999999999999999998
Q ss_pred HHHHHH
Q 014143 373 EQLLVS 378 (430)
Q Consensus 373 E~~l~~ 378 (430)
-+-+..
T Consensus 150 tk~ilE 155 (197)
T KOG4414|consen 150 TKGILE 155 (197)
T ss_pred HHHHHH
Confidence 776643
No 222
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=79.94 E-value=12 Score=32.48 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh---------------hhhhhH
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA---------------VTRNYS 93 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~---------------~~k~~~ 93 (430)
.+++++|.+.|+-+...++. .+.-.-.++-+|-..|+|.++++.|......- +. -.....
T Consensus 48 ~G~l~~A~~~f~~L~~~Dp~----~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 48 VKEFAGAARLFQLLTIYDAW----SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred CCCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 35799999999999888653 46777899999999999999999999877652 21 156778
Q ss_pred HHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHH
Q 014143 94 EKCINNIMDFVSGSASQNFSLLREFYQTTLKAL 126 (430)
Q Consensus 94 ~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l 126 (430)
.+..+.++......|. ...+.+.-+..++.+
T Consensus 123 ~~aF~~Ai~~~~~~~~--~~~l~~~A~~~L~~l 153 (157)
T PRK15363 123 IKALKAVVRICGEVSE--HQILRQRAEKMLQQL 153 (157)
T ss_pred HHHHHHHHHHhccChh--HHHHHHHHHHHHHHh
Confidence 8888888888865454 444444444444443
No 223
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=79.66 E-value=92 Score=33.35 Aligned_cols=218 Identities=8% Similarity=0.090 Sum_probs=122.9
Q ss_pred CCHHHHHHHHHHhhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH-HHHhcC
Q 014143 30 TDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNI-MDFVSG 106 (430)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~i-l~~~~~ 106 (430)
.|++.|...+.+-+.... +-.+..+.+---+++++.+.+... +...+...+...+. ..-....-..+=+ +...-.
T Consensus 74 ~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~-~~~~~w~~~frll~~~l~~~ 151 (608)
T PF10345_consen 74 ENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET-YGHSAWYYAFRLLKIQLALQ 151 (608)
T ss_pred CCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHh
Confidence 368888888887766543 223456777667788888888777 77777777777633 2223333333333 222211
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCC--CCCcchhhcchHHHH
Q 014143 107 SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE--DGTDDQKKGSQLLEV 184 (430)
Q Consensus 107 ~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~--~~~~d~~~~~~~~e~ 184 (430)
.++ .....+.++.+.+.-...++..+++-+.+--+.+.+..+..+++.+.+++........ +++.. ...+.+-+
T Consensus 152 ~~d--~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~--~~qL~~~~ 227 (608)
T PF10345_consen 152 HKD--YNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH--IPQLKALF 227 (608)
T ss_pred ccc--HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC--cHHHHHHH
Confidence 112 3334444444444322223444555555556666777787778877777774433221 11111 11233333
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhhh----cc-----------C--------------C---C----chhHHHHHHhh
Q 014143 185 YAIEIQMYTETKNNKKLKQLYQKALAIK----SA-----------I--------------P---H----PRIMGIIRECG 228 (430)
Q Consensus 185 ~l~~~~l~~~~~d~~ka~~~l~~a~~~~----~~-----------~--------------~---~----~~~~~~~~~~~ 228 (430)
.+...-.++..|++..++..++.-.... +. + + + ..+.+-.+..+
T Consensus 228 lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS 307 (608)
T PF10345_consen 228 LLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLS 307 (608)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHH
Confidence 3444445667788777776666432111 10 0 0 0 12345667889
Q ss_pred hHhhhhhhcHHHHHHHHHHHHHhhh
Q 014143 229 GKMHMAERQWADAATDFFEAFKNYD 253 (430)
Q Consensus 229 g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (430)
|+..++.+....|.++|-++...-+
T Consensus 308 ~l~~~~~~~~~ks~k~~~k~l~~i~ 332 (608)
T PF10345_consen 308 GLHNLYKGSMDKSEKFLEKALKQIE 332 (608)
T ss_pred HHHHhhccCchHHHHHHHHHHHHHH
Confidence 9999999988899999999976544
No 224
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.48 E-value=5.7 Score=24.01 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 183 e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
+++...+.++..+||+.+|..+++++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 456667777888888888888888776554
No 225
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=78.97 E-value=4.1 Score=28.27 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=31.9
Q ss_pred cccccc-chhhHHhHhCCChHHHHHHHHHhhhcCcee
Q 014143 351 KPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 351 ~~Y~~I-~l~~lA~~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
.|=.++ +...||+.+|++..-|.+.+.+|..+|.|.
T Consensus 15 ~~~~~l~s~~~la~~~~vs~~tv~~~l~~L~~~g~i~ 51 (60)
T smart00345 15 RPGDKLPSERELAAQLGVSRTTVREALSRLEAEGLVQ 51 (60)
T ss_pred CCCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 444567 899999999999999999999999999875
No 226
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=78.76 E-value=5.4 Score=27.90 Aligned_cols=50 Identities=16% Similarity=0.260 Sum_probs=41.2
Q ss_pred HHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC
Q 014143 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (430)
Q Consensus 345 ~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g 394 (430)
.++.++..+..++..+||+.++++..-+=..+-+|...|.|.-..|..++
T Consensus 7 ~iL~~l~~~~~~~~~~la~~~~~~~~~~t~~i~~L~~~g~I~r~~~~~D~ 56 (59)
T PF01047_consen 7 RILRILYENGGITQSELAEKLGISRSTVTRIIKRLEKKGLIERERDPDDR 56 (59)
T ss_dssp HHHHHHHHHSSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTET
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCC
Confidence 34445555677999999999999999999999999999999888877665
No 227
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=77.74 E-value=5.1 Score=32.02 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=38.7
Q ss_pred HHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcee---Eeeecc
Q 014143 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 392 (430)
Q Consensus 345 ~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~---g~IDq~ 392 (430)
.++..+....+++++.||+.+|+|+..+-+.+.+|...|-+. +.+|+.
T Consensus 7 ~il~~L~~~~~~~~~~la~~l~~s~~tv~~~l~~L~~~g~i~~~~~~~~~~ 57 (108)
T smart00344 7 KILEELQKDARISLAELAKKVGLSPSTVHNRVKRLEEEGVIKGYTAVINPK 57 (108)
T ss_pred HHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeceEEEeCHH
Confidence 344444445789999999999999999999999999999886 345643
No 228
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=77.55 E-value=12 Score=26.86 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=37.9
Q ss_pred cchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEcc
Q 014143 356 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (430)
Q Consensus 356 I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (430)
++.++|++.+|++...+...+..|...|.|...-+...+...++.
T Consensus 21 ~~~~ei~~~~~i~~~~i~~~l~~L~~~g~i~~~~~~~~~~~~~~~ 65 (78)
T cd00090 21 LTVSELAERLGLSQSTVSRHLKKLEEAGLVESRREGRRVYYSLTD 65 (78)
T ss_pred cCHHHHHHHHCcCHhHHHHHHHHHHHCCCeEEEEeccEEEEEeCC
Confidence 999999999999999999999999999999876666445544443
No 229
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=77.35 E-value=3.4 Score=30.86 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=31.6
Q ss_pred cccccccchhhHHhHhCCChHHHHHHHHHhhhcCce
Q 014143 350 IKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRI 385 (430)
Q Consensus 350 ~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i 385 (430)
.+.+.-.|..+||+.+|+|+.-|...+.++...|.+
T Consensus 27 ~R~~eGlS~kEIAe~LGIS~~TVk~~l~~~~~~~~~ 62 (73)
T TIGR03879 27 AREEAGKTASEIAEELGRTEQTVRNHLKGETKAGGL 62 (73)
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHhcCcccchH
Confidence 356689999999999999999999999988877764
No 230
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=77.06 E-value=5.2 Score=24.06 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=20.5
Q ss_pred HHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 224 IRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 224 ~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
++...|.++...|+|.+|..+|.++...
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4455678888888888888888888653
No 231
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=76.83 E-value=23 Score=28.78 Aligned_cols=50 Identities=6% Similarity=0.089 Sum_probs=41.6
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC---EEEEccC
Q 014143 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (430)
Q Consensus 352 ~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g---~v~~~~~ 401 (430)
....++.++||+.++++..-+-..|-+|...|.|...-|..++ .|..++.
T Consensus 39 ~~~~~t~~ela~~~~~~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~ 91 (118)
T TIGR02337 39 EQGSMEFTQLANQACILRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPK 91 (118)
T ss_pred HcCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHh
Confidence 3457899999999999999999999999999999988876665 4555543
No 232
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=76.01 E-value=22 Score=27.71 Aligned_cols=60 Identities=22% Similarity=0.226 Sum_probs=46.7
Q ss_pred cccCCCCHHHHHHHHHHhhcCCccch--h---hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 25 KGLVETDPEGALAGFAEVVAMEPEKA--E---WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 25 k~~~~~~~~~Ai~~~~~ii~~~~~~~--~---~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
..+..+|+.+|++.+....+...... . -..-++-.++.++...|+++++.+.++..+...
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45677899999999999987543111 1 123467778999999999999999999998875
No 233
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=75.71 E-value=9 Score=27.08 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=30.6
Q ss_pred ccccccc-hhhHHhHhCCChHHHHHHHHHhhhcCcee
Q 014143 351 KPYTRIR-IPFISKELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 351 ~~Y~~I~-l~~lA~~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
.+-..++ ..+||+.++++...|.+.+.+|...|-|.
T Consensus 20 ~~~~~~~~~~~la~~~~is~~~v~~~l~~L~~~G~i~ 56 (66)
T cd07377 20 KPGDRLPSERELAEELGVSRTTVREALRELEAEGLVE 56 (66)
T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3444454 99999999999999999999999999874
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=75.25 E-value=8.6 Score=39.08 Aligned_cols=54 Identities=20% Similarity=0.164 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (430)
.+++++|+..|++.++.+|++.+ .--++.+++-+|..+|+.+++++.+...+..
T Consensus 88 lGryeEAIa~f~rALeL~Pd~ae-A~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 88 KGRVKDALAQFETALELNPNPDE-AQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46799999999999999986533 1246799999999999999999999998885
No 235
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=75.08 E-value=5.7 Score=34.22 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=38.5
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcee---Eeeec
Q 014143 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQ 391 (430)
Q Consensus 346 l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~---g~IDq 391 (430)
|+...+--.|++++.||+.+|+|+..|-.-+-+|..+|-|. +.+|.
T Consensus 14 Il~~Lq~d~R~s~~eiA~~lglS~~tV~~Ri~rL~~~GvI~~~~~~v~~ 62 (153)
T PRK11179 14 ILEALMENARTPYAELAKQFGVSPGTIHVRVEKMKQAGIITGTRVDVNP 62 (153)
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeEEEEECH
Confidence 34444444899999999999999999999999999999996 45674
No 236
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=74.96 E-value=33 Score=32.09 Aligned_cols=80 Identities=19% Similarity=0.282 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHh
Q 014143 115 LREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE 194 (430)
Q Consensus 115 ~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~ 194 (430)
...+++.+.+.....+..|....+...+|..|+..|+|++|.++++.+... +..+| +.....++.....+.+..
T Consensus 157 iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~-yr~eg-----W~~l~~~~l~~l~~Ca~~ 230 (247)
T PF11817_consen 157 IIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASS-YRREG-----WWSLLTEVLWRLLECAKR 230 (247)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHhCC-----cHHHHHHHHHHHHHHHHH
Confidence 344555555555555566666688889999999999999999999999443 32211 223334444444445566
Q ss_pred hcCHHH
Q 014143 195 TKNNKK 200 (430)
Q Consensus 195 ~~d~~k 200 (430)
.||...
T Consensus 231 ~~~~~~ 236 (247)
T PF11817_consen 231 LGDVED 236 (247)
T ss_pred hCCHHH
Confidence 666554
No 237
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=74.80 E-value=6.5 Score=34.33 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=42.2
Q ss_pred HHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeE---eeecc
Q 014143 343 TQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG---HIDQV 392 (430)
Q Consensus 343 ~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g---~IDq~ 392 (430)
.+.|+..++--.|+++++||+.+|+|..-|-.-+-+|..+|.|.| .+|..
T Consensus 16 D~~IL~~Lq~d~R~s~~eiA~~lglS~~tv~~Ri~rL~~~GvI~~~~~~v~p~ 68 (164)
T PRK11169 16 DRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPH 68 (164)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECHH
Confidence 344566777789999999999999999999999999999999864 56643
No 238
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=74.69 E-value=5.3 Score=28.81 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=30.0
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCcee
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
..-++-.+||+.+|++.-.+..+|..|-.+|+|.
T Consensus 13 ~~p~~T~eiA~~~gls~~~aR~yL~~Le~eG~V~ 46 (62)
T PF04703_consen 13 NGPLKTREIADALGLSIYQARYYLEKLEKEGKVE 46 (62)
T ss_dssp TS-EEHHHHHHHHTS-HHHHHHHHHHHHHCTSEE
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 5668889999999999999999999999999985
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.58 E-value=72 Score=30.66 Aligned_cols=130 Identities=12% Similarity=0.089 Sum_probs=83.5
Q ss_pred hHHHHHHhhcccCCC-CHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHH
Q 014143 16 SRVLCSILEKGLVET-DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (430)
Q Consensus 16 ~~~~~~~~ak~~~~~-~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~ 94 (430)
.....+++|+.+.+. +..+|...|.......+++ ..+.-.++.+|...|+.+.+...+..+-..- ..+.+..
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~----~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~---~~~~~~~ 205 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN----SEAKLLLAECLLAAGDVEAAQAILAALPLQA---QDKAAHG 205 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc----chHHHHHHHHHHHcCChHHHHHHHHhCcccc---hhhHHHH
Confidence 455677888887766 6899999999998876654 4566788999999999999988887764432 1233333
Q ss_pred HHHHH---HHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014143 95 KCINN---IMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (430)
Q Consensus 95 k~v~~---il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~ 166 (430)
++. ++......|+ ...... .+ .. .-+-. ..-+.||..+...|++++|++.|-.+....
T Consensus 206 --l~a~i~ll~qaa~~~~--~~~l~~---~~----aa-dPdd~--~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 206 --LQAQIELLEQAAATPE--IQDLQR---RL----AA-DPDDV--EAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred --HHHHHHHHHHHhcCCC--HHHHHH---HH----Hh-CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 222 3334444444 111111 11 11 11111 224499999999999999998887777663
No 240
>PRK09954 putative kinase; Provisional
Probab=74.53 E-value=6.8 Score=38.86 Aligned_cols=54 Identities=19% Similarity=0.313 Sum_probs=45.0
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeE---eeeccCCEEEEc
Q 014143 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG---HIDQVNRLLERG 399 (430)
Q Consensus 346 l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g---~IDq~~g~v~~~ 399 (430)
|+.+++-..+++.++||+.|+++...|...|.+|..+|.|.| .+|+..+++.+.
T Consensus 8 il~~l~~~~~~s~~~la~~l~~s~~~v~~~i~~L~~~g~i~~~~~~l~~~~~v~viG 64 (362)
T PRK09954 8 ILAILRRNPLIQQNEIADILQISRSRVAAHIMDLMRKGRIKGKGYILTEQEYCVVVG 64 (362)
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCcCCcEEEEcCCccEEEEE
Confidence 455555556999999999999999999999999999999963 688888776654
No 241
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=73.95 E-value=1.3e+02 Score=33.25 Aligned_cols=27 Identities=7% Similarity=-0.063 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKS 165 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~ 165 (430)
...-|+..+..|+.+.|+.++...+..
T Consensus 915 ~~WWgqYlES~GemdaAl~~Y~~A~D~ 941 (1416)
T KOG3617|consen 915 YSWWGQYLESVGEMDAALSFYSSAKDY 941 (1416)
T ss_pred HHHHHHHHhcccchHHHHHHHHHhhhh
Confidence 345677888889988887776655544
No 242
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=73.90 E-value=6.8 Score=25.76 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=24.3
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHh
Q 014143 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSL 379 (430)
Q Consensus 346 l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~l 379 (430)
|+....--.+.++..||+.+|+|+..|-.-+.+|
T Consensus 8 Il~~Lq~d~r~s~~~la~~lglS~~~v~~Ri~rL 41 (42)
T PF13404_consen 8 ILRLLQEDGRRSYAELAEELGLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHH-TTS-HHHHHHHHTS-HHHHHHHHHHH
T ss_pred HHHHHHHcCCccHHHHHHHHCcCHHHHHHHHHHh
Confidence 3444444589999999999999999987776654
No 243
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=73.74 E-value=11 Score=31.56 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=37.2
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
..++.++||+.+++|...+++.+.+|...|.+...=....|..-..
T Consensus 24 ~~~s~~~ia~~~~ip~~~l~kil~~L~~~glv~s~~G~~Ggy~l~~ 69 (135)
T TIGR02010 24 GPVTLADISERQGISLSYLEQLFAKLRKAGLVKSVRGPGGGYQLGR 69 (135)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeCCCCCEeccC
Confidence 4699999999999999999999999999999976434444544333
No 244
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=73.45 E-value=10 Score=25.41 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=30.6
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeE
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g 387 (430)
..++..+||+.++++..-+...+..|...|.|.-
T Consensus 13 ~~~s~~~l~~~l~~s~~tv~~~l~~L~~~g~i~~ 46 (53)
T smart00420 13 GKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTR 46 (53)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999999999999999999988753
No 245
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=73.03 E-value=72 Score=28.76 Aligned_cols=94 Identities=12% Similarity=0.139 Sum_probs=48.8
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCch
Q 014143 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (430)
Q Consensus 140 ~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~ 219 (430)
+-+|+-.+..++..+|...|.++-..-+ .+- .-+-.+.-.|.+...|.+..|+..++-+... -|-
T Consensus 128 LglA~Aqfa~~~~A~a~~tLe~l~e~~p--a~r--------~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~-----ypg 192 (251)
T COG4700 128 LGLAQAQFAIQEFAAAQQTLEDLMEYNP--AFR--------SPDGHLLFARTLAAQGKYADAESAFEVAISY-----YPG 192 (251)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhhcCC--ccC--------CCCchHHHHHHHHhcCCchhHHHHHHHHHHh-----CCC
Confidence 4556666667777777777766655421 110 0112334456777777777777766655321 122
Q ss_pred hHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 220 IMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 220 ~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
-+++++. |.+...+|.-.+|..-+.+.++
T Consensus 193 ~~ar~~Y--~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 193 PQARIYY--AEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHH--HHHHHHhcchhHHHHHHHHHHH
Confidence 2343322 3444445555555555555444
No 246
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=72.72 E-value=11 Score=26.19 Aligned_cols=46 Identities=9% Similarity=0.052 Sum_probs=36.8
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEE
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (430)
-..+++.+|++.+|++...+-..+.+|...|.+.-.-+...+...+
T Consensus 8 ~~~~~~~~i~~~l~is~~~v~~~l~~L~~~g~i~~~~~~~~~~~~~ 53 (66)
T smart00418 8 EGELCVCELAEILGLSQSTVSHHLKKLREAGLVESRREGKRVYYSL 53 (66)
T ss_pred cCCccHHHHHHHHCCCHHHHHHHHHHHHHCCCeeeeecCCEEEEEE
Confidence 4568999999999999999999999999999997554444334333
No 247
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=72.62 E-value=8.6 Score=25.14 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~ 167 (430)
...+|..|.+.|++++|.+.++++.....
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45899999999999999999999999854
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=72.23 E-value=44 Score=34.56 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=61.0
Q ss_pred ccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHH-HHHHhh
Q 014143 150 GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMG-IIRECG 228 (430)
Q Consensus 150 g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~-~~~~~~ 228 (430)
++.+.|.++|...+...++ +. -+....+|++...||.++|-..++.+....+. -|.+.. ++++ .
T Consensus 247 ~~~~~a~~lL~~~~~~yP~----------s~--lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~--~~Ql~~l~~~E-l 311 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPN----------SA--LFLFFEGRLERLKGNLEEAIESFERAIESQSE--WKQLHHLCYFE-L 311 (468)
T ss_pred CCHHHHHHHHHHHHHhCCC----------cH--HHHHHHHHHHHHhcCHHHHHHHHHHhccchhh--HHhHHHHHHHH-H
Confidence 3566788888888887542 22 34567889999999999999999977532221 134443 3444 3
Q ss_pred hHhhhhhhcHHHHHHHHHHHHH
Q 014143 229 GKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 229 g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
|..++...||.+|..+|....+
T Consensus 312 ~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 312 AWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHchHHHHHHHHHHHHh
Confidence 5668889999999999888754
No 249
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=72.23 E-value=6.3 Score=26.00 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=29.6
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCcee
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
.++..+||+.+|++...+-+.+.+|...|.+.
T Consensus 8 ~~s~~~la~~l~~s~~tv~~~l~~L~~~g~l~ 39 (48)
T smart00419 8 PLTRQEIAELLGLTRETVSRTLKRLEKEGLIS 39 (48)
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 47889999999999999999999999999885
No 250
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=72.10 E-value=2.1e+02 Score=33.67 Aligned_cols=166 Identities=13% Similarity=0.110 Sum_probs=95.5
Q ss_pred HHHHhhcccCCCCHHHHHHHHHHhhcCC-ccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 014143 19 LCSILEKGLVETDPEGALAGFAEVVAME-PEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI 97 (430)
Q Consensus 19 ~~~~~ak~~~~~~~~~Ai~~~~~ii~~~-~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v 97 (430)
.+=|.|--+--++.++|-+.+++.+..- .-..+...+....+..+-..-|.-+.+.+.+....++..+ -.+=.-+
T Consensus 1461 WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~----~~V~~~L 1536 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDA----YTVHLKL 1536 (1710)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcch----HHHHHHH
Confidence 3446666666666777777777666532 1111223344444455555556666666666666555411 1111122
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhh
Q 014143 98 NNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKK 177 (430)
Q Consensus 98 ~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~ 177 (430)
..+.+...+ .....++++...+.... ..++| +++|++++...+-++|..+|.+...-..
T Consensus 1537 ~~iy~k~ek-----~~~A~ell~~m~KKF~q--~~~vW----~~y~~fLl~~ne~~aa~~lL~rAL~~lP---------- 1595 (1710)
T KOG1070|consen 1537 LGIYEKSEK-----NDEADELLRLMLKKFGQ--TRKVW----IMYADFLLRQNEAEAARELLKRALKSLP---------- 1595 (1710)
T ss_pred HHHHHHhhc-----chhHHHHHHHHHHHhcc--hhhHH----HHHHHHHhcccHHHHHHHHHHHHHhhcc----------
Confidence 222222222 11233444444443321 22344 4778888888888888889888877753
Q ss_pred cchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014143 178 GSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (430)
Q Consensus 178 ~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~ 209 (430)
+..+++++.--+++-++.||-+|+|.++..-.
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll 1627 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLL 1627 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHH
Confidence 25688998888899999999999988876543
No 251
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=71.78 E-value=16 Score=30.90 Aligned_cols=52 Identities=6% Similarity=0.007 Sum_probs=42.9
Q ss_pred cccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 350 IKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 350 ~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
..|=..++...||+.+|+|..-+++.+.+|-..|.|..+=-...|+....++
T Consensus 20 ~~~g~~~s~~~ia~~~~is~~~vrk~l~~L~~~Glv~s~~G~~GG~~l~~~~ 71 (141)
T PRK11014 20 LPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPA 71 (141)
T ss_pred CCCCCccCHHHHHHHHCcCHHHHHHHHHHHHhCCEEEEecCCCCCeeecCCH
Confidence 3444678999999999999999999999999999998777666676555443
No 252
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=71.55 E-value=7.5 Score=33.17 Aligned_cols=45 Identities=18% Similarity=0.258 Sum_probs=38.4
Q ss_pred HHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcee---Eeeec
Q 014143 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQ 391 (430)
Q Consensus 347 ~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~---g~IDq 391 (430)
+++.+--.++++..||+.+|+|+..+-.-+-+|..+|.|. +.+|.
T Consensus 14 L~~L~~d~r~~~~eia~~lglS~~~v~~Ri~~L~~~GiI~~~~~~v~~ 61 (154)
T COG1522 14 LRLLQEDARISNAELAERVGLSPSTVLRRIKRLEEEGVIKGYTAVLDP 61 (154)
T ss_pred HHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCceeeEEEEECH
Confidence 4455555669999999999999999999999999999986 56775
No 253
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=71.54 E-value=18 Score=33.16 Aligned_cols=52 Identities=21% Similarity=0.131 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhcCCcc--chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014143 32 PEGALAGFAEVVAMEPE--KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (430)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~--~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (430)
...|++.|.+.++.+.. .+....+.+.-+|.|+++.|+++++..++..++..
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 36899999999887642 23334788889999999999999999999988875
No 254
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=70.45 E-value=10 Score=36.57 Aligned_cols=89 Identities=19% Similarity=0.263 Sum_probs=49.7
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchh
Q 014143 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (430)
Q Consensus 141 ~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~ 220 (430)
-.|.++...|++++|++++.+. ..+|..+..+++++..+.+..|+..++..... .+..+
T Consensus 107 ~~A~i~~~~~~~~~AL~~l~~~-----------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~eD~~ 165 (290)
T PF04733_consen 107 LAATILFHEGDYEEALKLLHKG-----------------GSLELLALAVQILLKMNRPDLAEKELKNMQQI----DEDSI 165 (290)
T ss_dssp HHHHHHCCCCHHHHHHCCCTTT-----------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC----SCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcc-----------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCcHH
Confidence 4556677778888877655321 12466667777777788887777776655432 22222
Q ss_pred HHHHHHhhhHhhhhh--hcHHHHHHHHHHHHHhh
Q 014143 221 MGIIRECGGKMHMAE--RQWADAATDFFEAFKNY 252 (430)
Q Consensus 221 ~~~~~~~~g~~~~~~--~~y~~A~~~f~ea~~~~ 252 (430)
. +.++.+-+.+.. .+|.+|+..|-|..+.|
T Consensus 166 l--~qLa~awv~l~~g~e~~~~A~y~f~El~~~~ 197 (290)
T PF04733_consen 166 L--TQLAEAWVNLATGGEKYQDAFYIFEELSDKF 197 (290)
T ss_dssp H--HHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS
T ss_pred H--HHHHHHHHHHHhCchhHHHHHHHHHHHHhcc
Confidence 2 122233333332 35677776666655444
No 255
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=70.20 E-value=14 Score=24.63 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=29.4
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCcee
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
...++.+||+.+|++...|-..+..|...|.+.
T Consensus 14 ~~~~~~el~~~l~~s~~~vs~hL~~L~~~glV~ 46 (47)
T PF01022_consen 14 GPLTVSELAEELGLSQSTVSHHLKKLREAGLVE 46 (47)
T ss_dssp SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred CCCchhhHHHhccccchHHHHHHHHHHHCcCee
Confidence 678899999999999999999999999999774
No 256
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=69.80 E-value=15 Score=31.70 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=39.9
Q ss_pred HHHHhcc-cccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEE
Q 014143 345 VLLKLIK-PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLE 397 (430)
Q Consensus 345 ~l~~i~~-~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~ 397 (430)
.+..+.. +-..++...||+..++|...+++.+..|...|.|...=-...|..-
T Consensus 13 ~L~~LA~~~~~~~s~~eIA~~~~is~~~L~kIl~~L~~aGlv~S~rG~~GGy~L 66 (153)
T PRK11920 13 MLMYCAANDGKLSRIPEIARAYGVSELFLFKILQPLVEAGLVETVRGRNGGVRL 66 (153)
T ss_pred HHHHHHhCCCCcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeee
Confidence 3344432 3356899999999999999999999999999999765544444433
No 257
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=69.60 E-value=8.1 Score=23.85 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=24.8
Q ss_pred cchhhHHhHhCCChHHHHHHHHHhhhcCce
Q 014143 356 IRIPFISKELNVPEKDVEQLLVSLILDNRI 385 (430)
Q Consensus 356 I~l~~lA~~l~l~~~evE~~l~~lI~~g~i 385 (430)
++=.+||..+|++.+-|-..+.++-.+|.|
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKLERQGLI 32 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHHHcCCC
Confidence 456789999999999999999999988865
No 258
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=69.19 E-value=15 Score=25.27 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=29.9
Q ss_pred HHHHhc-ccccccchhhHHhHhCCChHHHHHHHHHhhhcC
Q 014143 345 VLLKLI-KPYTRIRIPFISKELNVPEKDVEQLLVSLILDN 383 (430)
Q Consensus 345 ~l~~i~-~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g 383 (430)
.++.++ +.=..|+.++||+.+++|..-|...+..+-..|
T Consensus 4 ~il~~L~~~~~~it~~eLa~~l~vS~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 4 QILKLLLESKEPITAKELAEELGVSRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHHTTTSBEHHHHHHHCTS-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 344444 332339999999999999999999999998877
No 259
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.75 E-value=1.3e+02 Score=29.90 Aligned_cols=122 Identities=16% Similarity=0.292 Sum_probs=69.5
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHH------H-----
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQ-TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK------C----- 96 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~-l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k------~----- 96 (430)
..|+..|+..++=-.+.+.+. ...+.. |+-+++..|+|+++++.|+-+... .. ..+...- .
T Consensus 35 ~rDytGAislLefk~~~~~EE----E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--~~-~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREE----EDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--DD-APAELGVNLACCKFYLGQY 107 (557)
T ss_pred cccchhHHHHHHHhhccchhh----hHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--CC-CCcccchhHHHHHHHHHHH
Confidence 458999999887655443211 223333 788999999999999999887653 21 1111110 0
Q ss_pred --HHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHH----------HHhHHHHHHHHHhccHHHHHHHHHHHHh
Q 014143 97 --INNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF----------KTNLKLCKIWFDMGEYGRMSKILKELHK 164 (430)
Q Consensus 97 --v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~----------r~~~~La~~~~~~g~~~~A~~~l~el~~ 164 (430)
-+.+.... |..+. ...-+..++.. -++++.|+ .-.+-||.+++-...|++|.+++..+..
T Consensus 108 ~eA~~~~~ka---~k~pL-~~RLlfhlahk----lndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 108 IEAKSIAEKA---PKTPL-CIRLLFHLAHK----LNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHhhC---CCChH-HHHHHHHHHHH----hCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01122222 22111 11222333322 24555444 1234688888888899999999988765
Q ss_pred h
Q 014143 165 S 165 (430)
Q Consensus 165 ~ 165 (430)
-
T Consensus 180 d 180 (557)
T KOG3785|consen 180 D 180 (557)
T ss_pred c
Confidence 4
No 260
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=68.74 E-value=11 Score=22.77 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=19.8
Q ss_pred HHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 224 IRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 224 ~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
.+...|..+...++|.+|..+|..+.+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344557888888888888888888765
No 261
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=68.73 E-value=18 Score=31.67 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=39.0
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEcc
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (430)
..++.+.||+.+++|...+++.+.+|-..|.+...=....|..--.+
T Consensus 24 ~~vs~~eIA~~~~ip~~~l~kIl~~L~~aGLv~s~rG~~GGy~Lar~ 70 (164)
T PRK10857 24 GPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKD 70 (164)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCCeeccCC
Confidence 57999999999999999999999999999999875455556544333
No 262
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=68.71 E-value=14 Score=26.39 Aligned_cols=51 Identities=18% Similarity=0.267 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCceeE
Q 014143 337 LLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (430)
Q Consensus 337 L~~~i~~~~l~~i~~~Y~~I-~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g 387 (430)
+++.++..-...-..|=+.+ +...||+.+|+|..-|..-+..|..+|.+.-
T Consensus 5 i~~~l~~~I~~g~~~~g~~lps~~~la~~~~vsr~tvr~al~~L~~~g~i~~ 56 (64)
T PF00392_consen 5 IYDQLRQAILSGRLPPGDRLPSERELAERYGVSRTTVREALRRLEAEGLIER 56 (64)
T ss_dssp HHHHHHHHHHTTSS-TTSBE--HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCCCCEeCCHHHHHHHhccCCcHHHHHHHHHHHCCcEEE
Confidence 34444433333334566899 9999999999999999999999999998853
No 263
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=68.13 E-value=7.7 Score=22.32 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=19.3
Q ss_pred hHHHHHHHHHhccHHHHHHHHH
Q 014143 139 NLKLCKIWFDMGEYGRMSKILK 160 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~ 160 (430)
...||..+...|++++|...+.
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4589999999999999998775
No 264
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=68.10 E-value=1.4e+02 Score=29.96 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=30.3
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014143 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (430)
Q Consensus 140 ~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~ 209 (430)
+-||.+++..+.|.+|.+.+....+.-. -.+-+..-+..+..+|+..+|.+..+.+.
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~~~-------------s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKLRP-------------SASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCC-------------ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3466666666666666666664433311 01223334455556666666666655553
No 265
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=67.48 E-value=13 Score=25.38 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=29.4
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCcee
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
=..+++.+||+.+|+|..-+-.++..|...|-+.
T Consensus 16 ~~~~t~~eia~~~gl~~stv~r~L~tL~~~g~v~ 49 (52)
T PF09339_consen 16 GGPLTLSEIARALGLPKSTVHRLLQTLVEEGYVE 49 (52)
T ss_dssp BSCEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCcCee
Confidence 3558999999999999999999999999988763
No 266
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=67.44 E-value=8.5 Score=27.47 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=31.0
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeE
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g 387 (430)
..++...||+.+|++...|.+.+.+|...|.|..
T Consensus 24 ~~~s~~ela~~~g~s~~tv~r~l~~L~~~g~i~~ 57 (67)
T cd00092 24 LPLTRQEIADYLGLTRETVSRTLKELEEEGLISR 57 (67)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 4589999999999999999999999999988864
No 267
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=67.41 E-value=1.6e+02 Score=30.87 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=42.7
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 141 ~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
-+|-.+...|++++|...++..... . . -+..|....+++...|+..+|...|.+|....
T Consensus 425 ala~~~~~~g~~~~A~~~l~rAl~L--------~----p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 425 ILAVQALVKGKTDEAYQAINKAIDL--------E----M-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--------C----C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3455555668888888888887666 1 1 14577777888888888888888888886543
No 268
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.77 E-value=15 Score=38.20 Aligned_cols=127 Identities=15% Similarity=0.159 Sum_probs=86.6
Q ss_pred cccCCCC-HHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 014143 25 KGLVETD-PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDF 103 (430)
Q Consensus 25 k~~~~~~-~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~ 103 (430)
+++.+.+ ...-.+.|.......+...+ ..+..-||-||.-.|.++.++++++..+... |. -..+=+.+...
T Consensus 402 ~s~~~~~~l~~i~~~fLeaa~~~~~~~D--pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pn-----d~~lWNRLGAt 473 (579)
T KOG1125|consen 402 KSFLDSSHLAHIQELFLEAARQLPTKID--PDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PN-----DYLLWNRLGAT 473 (579)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCCCC--hhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-Cc-----hHHHHHHhhHH
Confidence 5666655 57777888887665552111 4566678999999999999999999988764 43 23355555555
Q ss_pred hcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014143 104 VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (430)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~ 167 (430)
+.+.. ..+-...-|..+++. ++ -|+|+.++||--+...|.|.+|.+.+-+....-.
T Consensus 474 LAN~~--~s~EAIsAY~rALqL-qP-----~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 474 LANGN--RSEEAISAYNRALQL-QP-----GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred hcCCc--ccHHHHHHHHHHHhc-CC-----CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 55422 233444555555542 22 4668888999999999999999988877665533
No 269
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=66.59 E-value=12 Score=27.65 Aligned_cols=45 Identities=18% Similarity=0.107 Sum_probs=37.9
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCC
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (430)
-.++-+.||..+|++...|-+.+.+|..+|.|. ...|.+.+.+++
T Consensus 27 ~~lt~~~iA~~~g~sr~tv~r~l~~l~~~g~I~----~~~~~i~I~d~~ 71 (76)
T PF13545_consen 27 LPLTQEEIADMLGVSRETVSRILKRLKDEGIIE----VKRGKIIILDPE 71 (76)
T ss_dssp EESSHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEESSHH
T ss_pred ecCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE----EcCCEEEECCHH
Confidence 357889999999999999999999999998765 566788877653
No 270
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=66.56 E-value=39 Score=25.57 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=38.3
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC
Q 014143 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (430)
Q Consensus 346 l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g 394 (430)
|+.+...-..++|++|.+.+|++...+-..+..|...|-|.-+-....+
T Consensus 5 Il~~L~~~~~~~f~~L~~~l~lt~g~Ls~hL~~Le~~GyV~~~k~~~~~ 53 (80)
T PF13601_consen 5 ILALLYANEEATFSELKEELGLTDGNLSKHLKKLEEAGYVEVEKEFEGR 53 (80)
T ss_dssp HHHHHHHHSEEEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEE-SSS
T ss_pred HHHHHhhcCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEeccCC
Confidence 3444444678999999999999999999999999999999877666555
No 271
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.26 E-value=19 Score=33.98 Aligned_cols=65 Identities=22% Similarity=0.133 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHH
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~ 94 (430)
.+++++.|...|..+++..|+ ..|.-.++-.++.+..+.|+.+++-..+.++.+.. |.-..+..+
T Consensus 190 ~qg~y~~Aa~~f~~~~k~~P~-s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y-P~t~aA~~A 254 (262)
T COG1729 190 AQGDYEDAAYIFARVVKDYPK-SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY-PGTDAAKLA 254 (262)
T ss_pred hcccchHHHHHHHHHHHhCCC-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 467899999999999886653 45567899999999999999999999999999988 654433333
No 272
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.21 E-value=67 Score=29.27 Aligned_cols=119 Identities=19% Similarity=0.229 Sum_probs=68.5
Q ss_pred HHHHHHHHhhcCCc-cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCC--
Q 014143 34 GALAGFAEVVAMEP-EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ-- 110 (430)
Q Consensus 34 ~Ai~~~~~ii~~~~-~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~-- 110 (430)
+-.....++++... ++.......++.=|.=+|..|+|+++...|+.-+..- +..+. -+|.|+ +++ ...
T Consensus 74 eLmae~E~i~~deek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~c-p~~~~-----e~rsIl--y~N-raaa~ 144 (271)
T KOG4234|consen 74 ELMAEIEKIFSDEEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESC-PSTST-----EERSIL--YSN-RAAAL 144 (271)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhC-ccccH-----HHHHHH--Hhh-hHHHH
Confidence 33345566666533 3333457788888989999999999999999888876 43211 112221 111 000
Q ss_pred -ChhHHHHHHHHHHHHHH-HhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014143 111 -NFSLLREFYQTTLKALE-EAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (430)
Q Consensus 111 -~~~~~~~~~~~~~e~l~-~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~ 165 (430)
.......-++-|-..|+ |.++. +...|-|..|.....|++|++=+..+...
T Consensus 145 iKl~k~e~aI~dcsKaiel~pty~----kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 145 IKLRKWESAIEDCSKAIELNPTYE----KALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHhhhHHHHHHHHHhhHhcCchhH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 00011112222222222 12233 33447789999999999999888888776
No 273
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=66.00 E-value=58 Score=25.23 Aligned_cols=69 Identities=10% Similarity=0.128 Sum_probs=46.2
Q ss_pred HHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc
Q 014143 147 FDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 147 ~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
...|||.+|.+.|...-..+....+... ....-.-.+..+.++...|++.+|...++.|..+.....|.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~---~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~ 77 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSS---NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDR 77 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchh---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCH
Confidence 4569999999999888887654321110 01122334556778888899999999998887766555444
No 274
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=65.84 E-value=24 Score=25.32 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcee
Q 014143 330 IRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 330 l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
+..|...+..++ ....-.+-+.++.+|.+..++|.++|.+-++-||.-|-+.
T Consensus 7 i~~~fG~~~~~V-----~~~Ll~~G~ltl~~i~~~t~l~~~~Vk~~L~~LiQh~~v~ 58 (62)
T PF08221_consen 7 IEEHFGEIVAKV-----GEVLLSRGRLTLREIVRRTGLSPKQVKKALVVLIQHNLVQ 58 (62)
T ss_dssp HHHHHHHHHHHH-----HHHHHHC-SEEHHHHHHHHT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHcChHHHHH-----HHHHHHcCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCee
Confidence 344555555544 3344457899999999999999999999999999887664
No 275
>KOG3151 consensus 26S proteasome regulatory complex, subunit RPN12/PSMD8 [Posttranslational modification, protein turnover, chaperones]
Probab=65.72 E-value=97 Score=28.74 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=56.3
Q ss_pred cchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHH
Q 014143 293 PEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDV 372 (430)
Q Consensus 293 ~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~ev 372 (430)
|-+.+...|-+.+-.|.+.+.-...+. ..+|.+.-..+.|.+.||.---.-+-+.|..|+++..+++|.++.++-
T Consensus 135 ~~I~~~v~LEq~~MEGaYnKv~~a~~s-----~p~~~y~~FmdIl~~tiRdEIA~c~EKsYd~l~~s~a~~~L~f~~~~e 209 (260)
T KOG3151|consen 135 PYISHPVSLEQSLMEGAYNKVLSAKQS-----IPSEEYTYFMDILLDTIRDEIAGCIEKSYDKLSASDATQMLLFNNDKE 209 (260)
T ss_pred chhhhHHHHHHHHHhhHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHhcCChHH
Confidence 566676778888888877766554443 236777777888888888665566668899999999999999975443
Q ss_pred H
Q 014143 373 E 373 (430)
Q Consensus 373 E 373 (430)
.
T Consensus 210 ~ 210 (260)
T KOG3151|consen 210 L 210 (260)
T ss_pred H
Confidence 3
No 276
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=65.64 E-value=15 Score=23.94 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
+...++..|...|+++++.+.|+..++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 56788999999999999999999999875
No 277
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=65.53 E-value=24 Score=32.81 Aligned_cols=36 Identities=11% Similarity=0.084 Sum_probs=33.1
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEee
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHI 389 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~I 389 (430)
.+++-..||+.+|++..-+-.-+.+|-..|.|.++=
T Consensus 197 grlse~eLAerlGVSRs~ireAlrkLE~aGvIe~r~ 232 (251)
T TIGR02787 197 GLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 232 (251)
T ss_pred ccccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 499999999999999999999999999999998753
No 278
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=65.07 E-value=1.1e+02 Score=27.68 Aligned_cols=99 Identities=15% Similarity=0.135 Sum_probs=71.5
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
.++||.-..+.|++.||...+++...-.+. +|+ .+.+-.++..++.++...|...++.-.....+.-.|
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA----~d~-------a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFA----HDA-------AMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccC----CCH-------HHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 349999999999999999999988776553 242 344555677889999999999988765444332223
Q ss_pred hhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 219 ~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
.-+ +.-|+.+...|.|.+|...|--+...|
T Consensus 161 d~~----Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 161 DGH----LLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred Cch----HHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 212 223666777888999999998887766
No 279
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=64.67 E-value=19 Score=25.68 Aligned_cols=38 Identities=21% Similarity=0.244 Sum_probs=32.4
Q ss_pred hcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcee
Q 014143 349 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 349 i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
+.+.=..|+..+||+.||+++.-|-..+.+|-..|.+.
T Consensus 16 l~~~~~~v~~~~iA~~L~vs~~tvt~ml~~L~~~GlV~ 53 (60)
T PF01325_consen 16 LSEEGGPVRTKDIAERLGVSPPTVTEMLKRLAEKGLVE 53 (60)
T ss_dssp HHHCTSSBBHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHcCCCCccHHHHHHHHCCChHHHHHHHHHHHHCCCEE
Confidence 33455789999999999999999999999999999875
No 280
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=64.52 E-value=11 Score=21.96 Aligned_cols=26 Identities=19% Similarity=0.572 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Q 014143 57 LKQTVKLYYRLGKYKEMMDAYREMLT 82 (430)
Q Consensus 57 l~~l~~l~~~~~~~~~l~e~~~~l~~ 82 (430)
+..++..|.+.|+++++.+.+..+.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 46788999999999999999988765
No 281
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=63.98 E-value=26 Score=29.02 Aligned_cols=42 Identities=10% Similarity=0.117 Sum_probs=34.9
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCE
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~ 395 (430)
..++.+.||+.+++|...+.+.+..|...|.|...-....|.
T Consensus 24 ~~~s~~eia~~~~i~~~~v~~il~~L~~~gli~~~~g~~ggy 65 (132)
T TIGR00738 24 GPVSVKEIAERQGISRSYLEKILRTLRRAGLVESVRGPGGGY 65 (132)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCcEEeccCCCCCc
Confidence 379999999999999999999999999999987543333343
No 282
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=62.80 E-value=70 Score=34.11 Aligned_cols=121 Identities=10% Similarity=0.145 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh--hhHHHHHHHHHHHhcCCCC
Q 014143 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR--NYSEKCINNIMDFVSGSAS 109 (430)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k--~~~~k~v~~il~~~~~~~~ 109 (430)
|.-++..|..-++..|+. .+.-+..+.+.++++++.+.|...++.= ..+++ ...-..-..+.+.+++.|+
T Consensus 154 Pets~rvyrRYLk~~P~~-------~eeyie~L~~~d~~~eaa~~la~vln~d-~f~sk~gkSn~qlw~elcdlis~~p~ 225 (835)
T KOG2047|consen 154 PETSIRVYRRYLKVAPEA-------REEYIEYLAKSDRLDEAAQRLATVLNQD-EFVSKKGKSNHQLWLELCDLISQNPD 225 (835)
T ss_pred hHHHHHHHHHHHhcCHHH-------HHHHHHHHHhccchHHHHHHHHHhcCch-hhhhhcccchhhHHHHHHHHHHhCcc
Confidence 466666666666665432 2344566778899999999888877642 11221 1223445566777777665
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHh
Q 014143 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHK 164 (430)
Q Consensus 110 ~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~ 164 (430)
.- +-..+-..++.-+..-++.-. .+-.-||+.|...|.++.|-+++.+.-.
T Consensus 226 ~~--~slnvdaiiR~gi~rftDq~g--~Lw~SLAdYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 226 KV--QSLNVDAIIRGGIRRFTDQLG--FLWCSLADYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred hh--cccCHHHHHHhhcccCcHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 21 111111122221211122222 2233789999999999998877766443
No 283
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=62.74 E-value=20 Score=21.33 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 014143 56 ALKQTVKLYYRLGKYKEMMDAYREMLT 82 (430)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~ 82 (430)
.+..+++.|.+.|+++.+.+.+..+..
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467789999999999999999988876
No 284
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=62.63 E-value=23 Score=25.02 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=34.0
Q ss_pred HhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeE
Q 014143 348 KLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (430)
Q Consensus 348 ~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g 387 (430)
..+......++..||+.+|+|...+-..|..|...|.|..
T Consensus 17 ~~L~~~~~~t~~ela~~l~~~~~t~s~hL~~L~~aGli~~ 56 (61)
T PF12840_consen 17 RLLASNGPMTVSELAEELGISQSTVSYHLKKLEEAGLIEV 56 (61)
T ss_dssp HHHHHCSTBEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHhcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEE
Confidence 3335568899999999999999999999999999998865
No 285
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=62.48 E-value=1.3e+02 Score=27.59 Aligned_cols=93 Identities=13% Similarity=0.094 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhh-hHHHHhHHHHHHHHHhccHHH-------HHHHHHHHHhhccCCCCCcchhhcchHHH
Q 014143 112 FSLLREFYQTTLKALEEAKNER-LWFKTNLKLCKIWFDMGEYGR-------MSKILKELHKSCQREDGTDDQKKGSQLLE 183 (430)
Q Consensus 112 ~~~~~~~~~~~~e~l~~~~~~k-l~~r~~~~La~~~~~~g~~~~-------A~~~l~el~~~~~~~~~~~d~~~~~~~~e 183 (430)
.+...+.|.+++-+-+....+. ....+.+++|=+|.+.|+-+. |++.+.+.......+...++ -..
T Consensus 93 ~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~------~~~ 166 (214)
T PF09986_consen 93 LEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD------EAT 166 (214)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch------HHH
Confidence 5556677777777655432222 334778899999999998544 44444444443322111112 233
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014143 184 VYAIEIQMYTETKNNKKLKQLYQKALA 210 (430)
Q Consensus 184 ~~l~~~~l~~~~~d~~ka~~~l~~a~~ 210 (430)
+....+.++.+.|++.+|...+.+.-.
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 555667889999999999999877643
No 286
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=62.47 E-value=2e+02 Score=29.92 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=42.9
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 014143 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQ 206 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~ 206 (430)
+.+..+..+||....+.|..+||.+.+.++.++.... + ...++-..+..++..+.+..++.++.
T Consensus 256 ~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~----~------~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 256 NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL----D------NLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc----c------hhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3445556689999999999999999999999886421 2 22333333445566666666655544
No 287
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=61.99 E-value=2.4e+02 Score=30.75 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=29.8
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 141 ~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
-.|..+...++-++|...|.|..+.+. +...++-.-.+.+...|+...|++.+..|..+
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~~------------l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKIDP------------LSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcch------------hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 344444555555555555555555421 22233333344555566666666666665543
No 288
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=61.73 E-value=1.5e+02 Score=28.37 Aligned_cols=128 Identities=16% Similarity=0.240 Sum_probs=82.1
Q ss_pred cccCCCCHHHHHHHHHHhhcCCccc-hhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 014143 25 KGLVETDPEGALAGFAEVVAMEPEK-AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDF 103 (430)
Q Consensus 25 k~~~~~~~~~Ai~~~~~ii~~~~~~-~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~ 103 (430)
....+.+++..+..++.-+..+|++ .+| -.++.+|..+|+++.+..-|.+-...- +. +..... ..-.++-+
T Consensus 131 ~~~~~~~~~~l~a~Le~~L~~nP~d~egW-----~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~-n~~~~~-g~aeaL~~ 202 (287)
T COG4235 131 QPPAEQEMEALIARLETHLQQNPGDAEGW-----DLLGRAYMALGRASDALLAYRNALRLA-GD-NPEILL-GLAEALYY 202 (287)
T ss_pred cCCCcccHHHHHHHHHHHHHhCCCCchhH-----HHHHHHHHHhcchhHHHHHHHHHHHhC-CC-CHHHHH-HHHHHHHH
Confidence 3344556788888999988888865 466 679999999999999999999988875 43 222222 12222222
Q ss_pred hcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccC
Q 014143 104 VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (430)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~ 168 (430)
-.. +..+ ......+...+. . +.--+|...-||.-++++|+|.+|....+.+.+....
T Consensus 203 ~a~-~~~t-a~a~~ll~~al~---~---D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 203 QAG-QQMT-AKARALLRQALA---L---DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred hcC-Cccc-HHHHHHHHHHHh---c---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 221 2211 122233332222 1 1111244557899999999999999999999988653
No 289
>KOG3252 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.66 E-value=33 Score=30.47 Aligned_cols=93 Identities=13% Similarity=0.103 Sum_probs=68.7
Q ss_pred cchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhC-CChHH
Q 014143 293 PEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELN-VPEKD 371 (430)
Q Consensus 293 ~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~-l~~~e 371 (430)
..+..+..|.....++++..|=...... +.+-+++.-+.+.+|.-+-..+.-.|..|.=.-+|+++| ++..+
T Consensus 96 e~~r~ii~L~~~LEt~~Fq~FW~~~~~N-------~~mle~itGFedsvr~yachvv~iTyQkI~k~lLaellG~~sDs~ 168 (217)
T KOG3252|consen 96 EPFRSIIDLGDYLETCRFQQFWQEADEN-------RDMLEGITGFEDSVRKYACHVVGITYQKIDKWLLAELLGGLSDSQ 168 (217)
T ss_pred cchhHHHhHHHHHhhchHHHHhhhhccc-------hHHhcCCCcHHHHHHHHHHHheechHhhchHHHHHHhhCcccHHH
Confidence 3455566777778899988886544443 344456666777776555555567899999999999998 56779
Q ss_pred HHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 372 VEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 372 vE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
+|.++.+ .|-+.+.+|.+.+.
T Consensus 169 le~~~~~-------~GW~a~e~G~ifv~ 189 (217)
T KOG3252|consen 169 LEVWMTK-------YGWIADESGQIFVA 189 (217)
T ss_pred HHHHHHH-------ccceecCCceEEEe
Confidence 9999988 78899999966654
No 290
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=61.62 E-value=1.9e+02 Score=29.34 Aligned_cols=182 Identities=12% Similarity=0.084 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH---hcCCCCC---ChhHHHHHHHHHHHHH
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDF---VSGSASQ---NFSLLREFYQTTLKAL 126 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~---~~~~~~~---~~~~~~~~~~~~~e~l 126 (430)
..-.+..++++++-.|||+.+...|+.+.+.++....-.+. ...+.|+.. +...+.. ..+.....++.+...-
T Consensus 207 ~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~-A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y 285 (414)
T PF12739_consen 207 PEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYL-AGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTY 285 (414)
T ss_pred hHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHH-HhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHH
Confidence 45567789999999999999999999999998433222222 223333322 1111100 1112233444433322
Q ss_pred HH-----hhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHH--hhcCHH
Q 014143 127 EE-----AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYT--ETKNNK 199 (430)
Q Consensus 127 ~~-----~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~--~~~d~~ 199 (430)
.. ++....-+|+.+-.+.++...|.|.+|...+-.....+-. .+. ..+-.-++++++-.+. ...+.+
T Consensus 286 ~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~----~~l--~~~~~alllE~~a~~~~~~~~~~~ 359 (414)
T PF12739_consen 286 LKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILE----SDL--RPFGSALLLEQAAYCYASLRSNRP 359 (414)
T ss_pred HhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHh----hhh--hhHhhHHHHHHHHHhhcccccCCC
Confidence 22 1111233488889999999999998887666555544210 010 0000334444444444 111110
Q ss_pred -HHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhh
Q 014143 200 -KLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (430)
Q Consensus 200 -ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (430)
.... .-|--+-.....|.-+...+....|.++|..+...|..
T Consensus 360 ~~~~~-------------r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 360 SPGLT-------------RFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred Cccch-------------hhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 0000 00112333456777777888888888888888877753
No 291
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=61.35 E-value=50 Score=32.30 Aligned_cols=92 Identities=17% Similarity=0.229 Sum_probs=64.1
Q ss_pred hccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhh
Q 014143 149 MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECG 228 (430)
Q Consensus 149 ~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~ 228 (430)
.|++..-..-|+.++-.-.. | + .....+-|-.+..-|++-+.|..|..+|+++.+ ....||.+.+.+|.--
T Consensus 55 ~gd~~~~~~~LqslK~da~E--~--e---p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk--~kc~D~dlnavLY~NR 125 (390)
T KOG0551|consen 55 EGDPNPDNVCLQSLKADAEE--G--E---PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLK--KKCADPDLNAVLYTNR 125 (390)
T ss_pred CCCCCccHHHHHHhhhcccc--C--C---hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHh--hcCCCccHHHHHHhhH
Confidence 36655444455555443221 1 2 145778888899999999999999999988765 3466899998887755
Q ss_pred hHhhhhhhcHHHHHHHHHHHH
Q 014143 229 GKMHMAERQWADAATDFFEAF 249 (430)
Q Consensus 229 g~~~~~~~~y~~A~~~f~ea~ 249 (430)
+-.+.+-|||..|...-..+.
T Consensus 126 AAa~~~l~NyRs~l~Dcs~al 146 (390)
T KOG0551|consen 126 AAAQLYLGNYRSALNDCSAAL 146 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666677788888777766663
No 292
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=61.10 E-value=36 Score=24.23 Aligned_cols=49 Identities=8% Similarity=0.128 Sum_probs=35.2
Q ss_pred ccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccC---CEEEEc
Q 014143 351 KPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERG 399 (430)
Q Consensus 351 ~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~---g~v~~~ 399 (430)
.....++...||+.++++...+-..|-+|+..|.|.=.-|..+ ..+.++
T Consensus 14 ~~~~~~t~~~l~~~~~~~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT 65 (68)
T PF13463_consen 14 HSDGPMTQSDLAERLGISKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLT 65 (68)
T ss_dssp --TS-BEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-
T ss_pred ccCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeC
Confidence 4778999999999999999999999999999999964444433 344443
No 293
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=60.99 E-value=26 Score=30.10 Aligned_cols=53 Identities=13% Similarity=0.063 Sum_probs=41.4
Q ss_pred HHHHHhcc--cccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEE
Q 014143 344 QVLLKLIK--PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLL 396 (430)
Q Consensus 344 ~~l~~i~~--~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v 396 (430)
|.+..+.. ....++.+.||+..++|+..+++.+.+|-..|.+...=-...|..
T Consensus 12 ~~L~~LA~~~~~~~~s~~~IA~~~~is~~~L~kil~~L~kaGlV~S~rG~~GGy~ 66 (150)
T COG1959 12 RALLYLALLPGGGPVSSAEIAERQGISPSYLEKILSKLRKAGLVKSVRGKGGGYR 66 (150)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHhCcCHHHHHHHHHHHHHcCCEEeecCCCCCcc
Confidence 45555543 334799999999999999999999999999999976655444444
No 294
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=60.63 E-value=20 Score=23.82 Aligned_cols=25 Identities=12% Similarity=0.317 Sum_probs=21.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Q 014143 59 QTVKLYYRLGKYKEMMDAYREMLTY 83 (430)
Q Consensus 59 ~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (430)
.+++.|.+.|+.+.+.+.+..++.-
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 5788999999999999999988854
No 295
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=59.98 E-value=52 Score=30.23 Aligned_cols=69 Identities=13% Similarity=0.156 Sum_probs=52.0
Q ss_pred HHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCCccchHHHHHHHHHH
Q 014143 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNS 416 (430)
Q Consensus 347 ~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~~w~~ 416 (430)
+....-...||.++||+.++++..-+-..|.+|-..|.|.-..|.....|.+++... ........+|..
T Consensus 13 lg~l~~~~~IS~~eLA~~L~iS~~Tvsr~Lk~LEe~GlI~R~~~~r~~~v~LTekG~-~ll~~~~~d~~~ 81 (217)
T PRK14165 13 LGAVNNTVKISSSEFANHTGTSSKTAARILKQLEDEGYITRTIVPRGQLITITEKGL-DVLYNEYADYSR 81 (217)
T ss_pred HhccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEcCCceEEEECHHHH-HHHHHHHHHHHH
Confidence 333444568999999999999999999999999999999999988777788876532 123334444443
No 296
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=59.65 E-value=19 Score=21.22 Aligned_cols=26 Identities=19% Similarity=0.461 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Q 014143 57 LKQTVKLYYRLGKYKEMMDAYREMLT 82 (430)
Q Consensus 57 l~~l~~l~~~~~~~~~l~e~~~~l~~ 82 (430)
+..++..|.+.|+++++.+.+..+..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56788999999999999999988865
No 297
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=59.16 E-value=1e+02 Score=25.52 Aligned_cols=79 Identities=22% Similarity=0.279 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHh---hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHH
Q 014143 114 LLREFYQTTLKALEEA---KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ 190 (430)
Q Consensus 114 ~~~~~~~~~~e~l~~~---~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~ 190 (430)
.+..+++.|...+... .|+..++++-++.|++.- ++.+++.-+...-. +.....+|..-+.
T Consensus 44 ~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~~I----------G~~~A~fY~~wA~ 107 (126)
T PF08311_consen 44 GLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSKGI----------GTKLALFYEEWAE 107 (126)
T ss_dssp HHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHHTT----------STTBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCc----------cHHHHHHHHHHHH
Confidence 4455555555554431 345566666555555322 67777777776522 2345678888888
Q ss_pred HHHhhcCHHHHHHHHHHH
Q 014143 191 MYTETKNNKKLKQLYQKA 208 (430)
Q Consensus 191 l~~~~~d~~ka~~~l~~a 208 (430)
++...|++.+|...++.+
T Consensus 108 ~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHTT-HHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhh
Confidence 999999999999998765
No 298
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=58.82 E-value=1.7e+02 Score=31.47 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHH
Q 014143 181 LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRE 226 (430)
Q Consensus 181 ~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~ 226 (430)
..++.+--+.+-..+|.+.+|+++|--+. .+.||+..+.+|.
T Consensus 657 ~r~mclrFAdlEtklGEidRARaIya~~s----q~~dPr~~~~fW~ 698 (835)
T KOG2047|consen 657 AREMCLRFADLETKLGEIDRARAIYAHGS----QICDPRVTTEFWD 698 (835)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhh----hcCCCcCChHHHH
Confidence 35666667778888899999999886553 3568887765543
No 299
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=58.74 E-value=33 Score=26.89 Aligned_cols=47 Identities=13% Similarity=0.096 Sum_probs=39.5
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEcc
Q 014143 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (430)
Q Consensus 352 ~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (430)
....++-.+||+.+|++.+-|-+.|.+|...|.|. .+...|.+-++.
T Consensus 44 ~~~~is~~eLa~~~g~sr~tVsr~L~~Le~~GlI~--r~~~~~~~~~n~ 90 (95)
T TIGR01610 44 KQDRVTATVIAELTGLSRTHVSDAIKSLARRRIIF--RQGMMGIVGVNT 90 (95)
T ss_pred cCCccCHHHHHHHHCcCHHHHHHHHHHHHHCCCee--eecCCceeecCC
Confidence 45688899999999999999999999999999996 345567777663
No 300
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=58.66 E-value=40 Score=29.98 Aligned_cols=51 Identities=24% Similarity=0.356 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHhh
Q 014143 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLG----KYKEMMDAYREMLTYIKS 86 (430)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~----~~~~l~e~~~~l~~~~~~ 86 (430)
+++|+..|++.+..+|+. -.++-.+|..|...+ +..++.++|.+-..+|+.
T Consensus 51 iedAisK~eeAL~I~P~~----hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fqk 105 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNK----HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQK 105 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCch----HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 578999999999988864 456666666665544 455666777777777633
No 301
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=58.58 E-value=19 Score=26.07 Aligned_cols=38 Identities=18% Similarity=0.119 Sum_probs=34.2
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEee
Q 014143 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHI 389 (430)
Q Consensus 352 ~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~I 389 (430)
.....+..+||+.+|+|...|-..|.+|...|.+.-.-
T Consensus 19 ~~~~~t~~eIa~~l~i~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 19 KNGPATAEEIAEELGISRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp HHCHEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEE
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEc
Confidence 56789999999999999999999999999999986544
No 302
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=58.47 E-value=1.9e+02 Score=31.43 Aligned_cols=55 Identities=11% Similarity=0.024 Sum_probs=36.6
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHH
Q 014143 190 QMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (430)
Q Consensus 190 ~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea 248 (430)
.++..+|||.+.-++++..-. -.+...+..-+.-.|..+.....|.+|.+||..+
T Consensus 768 elr~klgDwfrV~qL~r~g~~----d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 768 ELRKKLGDWFRVYQLIRNGGS----DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHhhhhHHHHHHHHHccCC----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788999998887764311 1122233333445578888889999999998776
No 303
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=58.42 E-value=50 Score=24.68 Aligned_cols=45 Identities=11% Similarity=0.036 Sum_probs=34.9
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
....++++|+...+++...+.+.|-.|+..|.| ...++...+++.
T Consensus 17 ~~~~~~t~i~~~~~L~~~~~~~yL~~L~~~gLI----~~~~~~Y~lTek 61 (77)
T PF14947_consen 17 KGGAKKTEIMYKANLNYSTLKKYLKELEEKGLI----KKKDGKYRLTEK 61 (77)
T ss_dssp TT-B-HHHHHTTST--HHHHHHHHHHHHHTTSE----EEETTEEEE-HH
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHHHHHCcCe----eCCCCEEEECcc
Confidence 577889999999999999999999999999999 336777777765
No 304
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=58.32 E-value=14 Score=30.75 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=35.1
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g 394 (430)
..++..+||+.+|+|...+.+.+..|...|.|.+.-....|
T Consensus 24 ~~~s~~eia~~l~is~~~v~~~l~~L~~~Gli~~~~g~~gg 64 (130)
T TIGR02944 24 QPYSAAEIAEQTGLNAPTVSKILKQLSLAGIVTSKRGVEGG 64 (130)
T ss_pred CCccHHHHHHHHCcCHHHHHHHHHHHHHCCcEEecCCCCCC
Confidence 57999999999999999999999999999999765333334
No 305
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=58.29 E-value=1.2e+02 Score=34.16 Aligned_cols=63 Identities=17% Similarity=0.129 Sum_probs=33.5
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 014143 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (430)
Q Consensus 141 ~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a 208 (430)
+.|-+..+.|+|.+|...++.+-..... +..--..+.|.++..+..+...|=..++..++.++
T Consensus 635 k~A~~ecd~GkYkeald~l~~ii~~~s~-----e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 635 KEAVMECDNGKYKEALDALGLIIYAFSL-----ERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH-----HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 4445555667777776666655543211 10001234566666666666666666665555554
No 306
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=57.67 E-value=51 Score=29.71 Aligned_cols=55 Identities=11% Similarity=0.147 Sum_probs=41.9
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEe-----eeccCCEEEEcc
Q 014143 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH-----IDQVNRLLERGD 400 (430)
Q Consensus 346 l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~-----IDq~~g~v~~~~ 400 (430)
++.++.....++...||+.+|++..-|-..|.+|...|.|.-. .+++...+.++.
T Consensus 6 IL~~L~~~~~~t~~eLA~~lgis~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~ 65 (203)
T TIGR02702 6 ILSYLLKQGQATAAALAEALAISPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSR 65 (203)
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECc
Confidence 3444444466999999999999999999999999999999754 234444455554
No 307
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=56.50 E-value=18 Score=34.16 Aligned_cols=44 Identities=11% Similarity=0.224 Sum_probs=40.2
Q ss_pred HHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCce
Q 014143 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRI 385 (430)
Q Consensus 342 ~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i 385 (430)
|...|+.+++...++++++||+.|++|..-|.+-|..|-..|.+
T Consensus 6 R~~~Il~~L~~~~~v~v~eLa~~l~VS~~TIRRDL~~Le~~g~l 49 (256)
T PRK10434 6 RQAAILEYLQKQGKTSVEELAQYFDTTGTTIRKDLVILEHAGTV 49 (256)
T ss_pred HHHHHHHHHHHcCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 66678888888999999999999999999999999999999866
No 308
>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms. Ufm1 is known to covalently attach with cellular protein(s) via a specific E1-activating enzyme (Uba5), an E2-conjugating enzyme (Ufc1), and a E3-ligating enzyme []. This entry represents E3 UFM1-protein ligase 1.
Probab=56.33 E-value=55 Score=31.20 Aligned_cols=56 Identities=20% Similarity=0.408 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeecc
Q 014143 332 NYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV 392 (430)
Q Consensus 332 ~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~ 392 (430)
.+++.+.+.+.+ ...--..|+++++|+.+++|.+.+-..+......+.|+|++|..
T Consensus 112 ~Yld~l~~Eine-----~Lqe~G~vsi~eLa~~~~Lp~efl~~~li~~~lg~~I~g~~d~~ 167 (272)
T PF09743_consen 112 SYLDSLAEEINE-----KLQESGQVSISELAKQYDLPSEFLKEELISKRLGKIIKGRLDGD 167 (272)
T ss_pred HHHHHHHHHHHH-----HHHHcCeEeHHHHHHhcCCcHHHHHHHHhhhhcCcceeEEEeCC
Confidence 345555554432 22334899999999999999999997777778888999999998
No 309
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=56.33 E-value=19 Score=33.59 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=39.5
Q ss_pred HHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcee
Q 014143 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 342 ~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
|...|+.+++....++.++||+.||+++.-+.+.|..|-..|++.
T Consensus 5 R~~~Il~~l~~~~~~~~~eLa~~l~VS~~TiRRdL~~L~~~~~l~ 49 (240)
T PRK10411 5 RQQAIVDLLLNHTSLTTEALAEQLNVSKETIRRDLNELQTQGKIL 49 (240)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 555677788788999999999999999999999999999887774
No 310
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=56.20 E-value=26 Score=26.71 Aligned_cols=42 Identities=12% Similarity=0.221 Sum_probs=34.9
Q ss_pred HHHhcccc-cccchhhHHhHhCCChHHHHHHHHHhhhcCceeE
Q 014143 346 LLKLIKPY-TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (430)
Q Consensus 346 l~~i~~~Y-~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g 387 (430)
++.++... ..+++..||+.+|+|..-|-..+..|...|.+..
T Consensus 10 Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~ 52 (91)
T smart00346 10 VLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQ 52 (91)
T ss_pred HHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeee
Confidence 34444333 4799999999999999999999999999998865
No 311
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=55.91 E-value=1.5e+02 Score=28.50 Aligned_cols=98 Identities=17% Similarity=0.205 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 014143 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (430)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~k 133 (430)
...|+.=|.=..+.++|.++++.|..-+.+. +. +++==+-| .-- +.+ +-+.-..+.+|.....-+-
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~-P~---nAVyycNR-AAA-y~~--------Lg~~~~AVkDce~Al~iDp 146 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELD-PT---NAVYYCNR-AAA-YSK--------LGEYEDAVKDCESALSIDP 146 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CC---cchHHHHH-HHH-HHH--------hcchHHHHHHHHHHHhcCh
Confidence 4455666777889999999999999988875 33 11111100 000 000 0011111112211112334
Q ss_pred hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014143 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (430)
Q Consensus 134 l~~r~~~~La~~~~~~g~~~~A~~~l~el~~~ 165 (430)
.+.|...|||..|+..|+|.+|.+.+++....
T Consensus 147 ~yskay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 147 HYSKAYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred HHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 56688889999999999999999988777666
No 312
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=55.32 E-value=1.5e+02 Score=30.56 Aligned_cols=92 Identities=14% Similarity=0.132 Sum_probs=66.6
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCch
Q 014143 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (430)
Q Consensus 140 ~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~ 219 (430)
+-.|.-++..|++++|.+.|+++.....+ + .. +....+.+++..|..++|.+.++++.... |.
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~~~P~-----N----~~---~~~~~~~i~~~~nk~~~A~e~~~kal~l~-----P~ 372 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIAAQPD-----N----PY---YLELAGDILLEANKAKEAIERLKKALALD-----PN 372 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhCCC-----C----HH---HHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CC
Confidence 34566678889999999999999888642 2 22 23345678899999999999998886432 22
Q ss_pred hHHHHHHhhhHhhhhhhcHHHHHHHHHHHH
Q 014143 220 IMGIIRECGGKMHMAERQWADAATDFFEAF 249 (430)
Q Consensus 220 ~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (430)
- ..+....|..++..|++.+|.+.+-...
T Consensus 373 ~-~~l~~~~a~all~~g~~~eai~~L~~~~ 401 (484)
T COG4783 373 S-PLLQLNLAQALLKGGKPQEAIRILNRYL 401 (484)
T ss_pred c-cHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence 1 3345556888888899998888777764
No 313
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=54.96 E-value=2.7e+02 Score=30.32 Aligned_cols=160 Identities=9% Similarity=0.094 Sum_probs=87.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCC-------hhHHHHHHHHHHHHHHHhh
Q 014143 58 KQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQN-------FSLLREFYQTTLKALEEAK 130 (430)
Q Consensus 58 ~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~-------~~~~~~~~~~~~e~l~~~~ 130 (430)
+.+..++-+.+.|+..+.+|..+- ...+++.++++.++ .+ |+.. .-.-..+++.+.|.-+.
T Consensus 415 ksAl~I~Erlemw~~vi~CY~~lg-------~~~kaeei~~q~le--k~-~d~~lyc~LGDv~~d~s~yEkawElsn~-- 482 (777)
T KOG1128|consen 415 KSALVIFERLEMWDPVILCYLLLG-------QHGKAEEINRQELE--KD-PDPRLYCLLGDVLHDPSLYEKAWELSNY-- 482 (777)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhc-------ccchHHHHHHHHhc--CC-CcchhHHHhhhhccChHHHHHHHHHhhh--
Confidence 445567777778888887776552 34456777777776 11 2200 00001344444443211
Q ss_pred hhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014143 131 NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (430)
Q Consensus 131 ~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~ 210 (430)
+-.|..+-+|...+..++|++|.+.++.-... . ....+.+..-.-.++..+++..|-.+++.+.+
T Consensus 483 ---~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------n----plq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 483 ---ISARAQRSLALLILSNKDFSEADKHLERSLEI--------N----PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred ---hhHHHHHhhccccccchhHHHHHHHHHHHhhc--------C----ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 11133345666667778999888888766554 1 34456666666667777888888777777654
Q ss_pred hhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 211 IKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
.. |.- +.-+---...|+..++=.+|++.+-|+.+
T Consensus 548 L~-----Pd~-~eaWnNls~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 548 LE-----PDN-AEAWNNLSTAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred cC-----CCc-hhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence 32 110 00011112234444555667777777743
No 314
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=54.83 E-value=18 Score=25.13 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhh
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLI 380 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI 380 (430)
+.+++.+||+.||++..-+...|.+..
T Consensus 22 R~~tl~elA~~lgis~st~~~~LRrae 48 (53)
T PF04967_consen 22 RRITLEELAEELGISKSTVSEHLRRAE 48 (53)
T ss_pred CcCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 799999999999999988887777654
No 315
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=54.52 E-value=1.7e+02 Score=26.52 Aligned_cols=152 Identities=8% Similarity=0.084 Sum_probs=84.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHh---hhhhh
Q 014143 58 KQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA---KNERL 134 (430)
Q Consensus 58 ~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~---~~~kl 134 (430)
..-+..|.+.|||.++-.+|.....-- -.-+...+....+-..+.+.+. .....-|.+.+..+.+.. .-+|.
T Consensus 55 ~~eie~Ckek~DW~klg~ly~nv~~gc---e~~~dlq~~~~~va~~Ltkd~K--dk~~vPFceFAetV~k~~q~~e~dK~ 129 (233)
T PF14669_consen 55 VVEIEHCKEKGDWTKLGNLYINVKMGC---EKFADLQRFCACVAEALTKDSK--DKPGVPFCEFAETVCKDPQNDEVDKT 129 (233)
T ss_pred HHHHHHHhhhccHHHHhhHHhhHHhhc---CCHHHHHHHHHHHHHHHHhccc--ccCCCCHHHHHHHHhcCCccchhhhh
Confidence 334679999999999999998776533 2334444444444444333111 011123444443333332 23445
Q ss_pred HH-HHhHHHHHHHHHhccHHHHHHHHHHH---HhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014143 135 WF-KTNLKLCKIWFDMGEYGRMSKILKEL---HKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (430)
Q Consensus 135 ~~-r~~~~La~~~~~~g~~~~A~~~l~el---~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~ 210 (430)
++ |+-+-+--.|....+|.+..++|..+ +...+...|-...-+......+.-.-+.+++..|+++.|--.++.+.=
T Consensus 130 ~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLreseW 209 (233)
T PF14669_consen 130 LLGRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRESEW 209 (233)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhccce
Confidence 55 77666666777888898877665554 444444333211111222334444445678899999999888876654
Q ss_pred hhcc
Q 014143 211 IKSA 214 (430)
Q Consensus 211 ~~~~ 214 (430)
+.++
T Consensus 210 ii~t 213 (233)
T PF14669_consen 210 IIST 213 (233)
T ss_pred eecC
Confidence 4443
No 316
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=54.45 E-value=69 Score=22.20 Aligned_cols=28 Identities=21% Similarity=0.282 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014143 56 ALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (430)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (430)
++..++--+++.|+|+++.+++..+++.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 5677888899999999999999999986
No 317
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=54.31 E-value=2.7e+02 Score=28.78 Aligned_cols=192 Identities=13% Similarity=0.114 Sum_probs=113.6
Q ss_pred CCCHHHHHHHHHHhhcCCc---cchhhhHH---------HHHHH------------------HHHHHHhCCHHHHHHHHH
Q 014143 29 ETDPEGALAGFAEVVAMEP---EKAEWGFK---------ALKQT------------------VKLYYRLGKYKEMMDAYR 78 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~---~~~~~~~k---------~l~~l------------------~~l~~~~~~~~~l~e~~~ 78 (430)
.-|+++|+..|++|...+| ++.+--.. .+..+ +.-|.-.++.++++.+++
T Consensus 275 ~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFk 354 (559)
T KOG1155|consen 275 QRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFK 354 (559)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHH
Confidence 3479999999999998887 33221111 11111 234445566677777777
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHH-HhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHH
Q 014143 79 EMLTYIKSAVTRNYSEKCINNIMD-FVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSK 157 (430)
Q Consensus 79 ~l~~~~~~~~~k~~~~k~v~~il~-~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ 157 (430)
.-++.. +. ++ ++=.+|. .+-+..+ .+-...-|..+.+. .+ .+-|-| .-||+.|.-.+-.-=|+=
T Consensus 355 RALkLN-p~----~~--~aWTLmGHEyvEmKN--t~AAi~sYRrAvdi-~p-~DyRAW----YGLGQaYeim~Mh~YaLy 419 (559)
T KOG1155|consen 355 RALKLN-PK----YL--SAWTLMGHEYVEMKN--THAAIESYRRAVDI-NP-RDYRAW----YGLGQAYEIMKMHFYALY 419 (559)
T ss_pred HHHhcC-cc----hh--HHHHHhhHHHHHhcc--cHHHHHHHHHHHhc-Cc-hhHHHH----hhhhHHHHHhcchHHHHH
Confidence 666653 22 11 1111221 1222222 33444445544442 11 233444 456777776666556677
Q ss_pred HHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhc
Q 014143 158 ILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQ 237 (430)
Q Consensus 158 ~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 237 (430)
++++....-+ .|. .+.....+.|..+++...|..+|..|-.... ..+.....-|.+|-.-++
T Consensus 420 YfqkA~~~kP-----nDs-------Rlw~aLG~CY~kl~~~~eAiKCykrai~~~d------te~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 420 YFQKALELKP-----NDS-------RLWVALGECYEKLNRLEEAIKCYKRAILLGD------TEGSALVRLAKLYEELKD 481 (559)
T ss_pred HHHHHHhcCC-----Cch-------HHHHHHHHHHHHhccHHHHHHHHHHHHhccc------cchHHHHHHHHHHHHHHh
Confidence 7777666533 242 2344456788999999999999998854432 234455556888888999
Q ss_pred HHHHHHHHHHHHHhhh
Q 014143 238 WADAATDFFEAFKNYD 253 (430)
Q Consensus 238 y~~A~~~f~ea~~~~~ 253 (430)
+.+|.++|-...+...
T Consensus 482 ~~eAa~~yek~v~~~~ 497 (559)
T KOG1155|consen 482 LNEAAQYYEKYVEVSE 497 (559)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988877664
No 318
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=54.29 E-value=43 Score=34.63 Aligned_cols=63 Identities=17% Similarity=0.367 Sum_probs=35.6
Q ss_pred cCCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHH
Q 014143 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (430)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~ 94 (430)
++.+||.+|++.|-+.|+.+|++ .+.+.+-+-+|.+.|.+..++.-.+..++.- +...|+++-
T Consensus 369 Fk~gdy~~Av~~YteAIkr~P~D----a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~R 431 (539)
T KOG0548|consen 369 FKKGDYPEAVKHYTEAIKRDPED----ARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLR 431 (539)
T ss_pred HhccCHHHHHHHHHHHHhcCCch----hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHH
Confidence 34556666666666666666544 4556666666666666666666555555543 333333333
No 319
>PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.
Probab=54.27 E-value=25 Score=28.71 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=35.9
Q ss_pred HHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEe
Q 014143 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (430)
Q Consensus 345 ~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~ 388 (430)
.|+.+... ..|..+||..+++|..-+.-++++|+..|.+..+
T Consensus 47 ~Il~lC~~--~~SVAEiAA~L~lPlgVvrVLvsDL~~~G~v~v~ 88 (114)
T PF05331_consen 47 AILELCRR--PLSVAEIAARLGLPLGVVRVLVSDLADAGLVRVR 88 (114)
T ss_pred HHHHHHCC--CccHHHHHHhhCCCchhhhhhHHHHHhCCCEEEe
Confidence 34555555 8899999999999999999999999999988654
No 320
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=53.98 E-value=1.1e+02 Score=25.59 Aligned_cols=43 Identities=12% Similarity=0.070 Sum_probs=37.4
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEE
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLE 397 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~ 397 (430)
.++..+||+.++++..-+-..|-+|...|.|.=.-|..++...
T Consensus 46 ~~t~~eLa~~l~~~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~ 88 (144)
T PRK03573 46 EQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAK 88 (144)
T ss_pred CCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeecCCCCcCee
Confidence 4678999999999999999999999999999988877776433
No 321
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=53.92 E-value=43 Score=21.74 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=26.9
Q ss_pred cchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEE
Q 014143 356 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (430)
Q Consensus 356 I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (430)
+++.++|+.+|++..-+.. ++.+|.|.+... .+...+
T Consensus 2 lt~~e~a~~lgis~~ti~~----~~~~g~i~~~~~--g~~~~~ 38 (49)
T TIGR01764 2 LTVEEAAEYLGVSKDTVYR----LIHEGELPAYRV--GRHYRI 38 (49)
T ss_pred CCHHHHHHHHCCCHHHHHH----HHHcCCCCeEEe--CCeEEE
Confidence 5789999999999876665 457898887543 344444
No 322
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=53.92 E-value=27 Score=19.24 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014143 55 KALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (430)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (430)
.++..++.++...|+++.+...++..++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35678899999999999999999887764
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.71 E-value=98 Score=33.99 Aligned_cols=70 Identities=13% Similarity=0.213 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh--hhhhhHHHHHHHHHHHhc
Q 014143 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA--VTRNYSEKCINNIMDFVS 105 (430)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~--~~k~~~~k~v~~il~~~~ 105 (430)
++-|+..-++- ..+.+.....-.+-|.-++.+|+++++.++|...+++.++. +.+=--++.|+++..++.
T Consensus 350 y~~Ai~LAk~~----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe 421 (933)
T KOG2114|consen 350 YKVAINLAKSQ----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLE 421 (933)
T ss_pred HHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHH
Confidence 45555543322 22334345566677899999999999999999988887553 222223445555555443
No 324
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=53.58 E-value=2.9e+02 Score=29.08 Aligned_cols=165 Identities=12% Similarity=0.123 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 014143 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (430)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~k 133 (430)
...+-.-++.|+..+++.+-.+....++... |--++-....+- -.+.. .+. .+++.+....++.-++..
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia----~l~el-~~~-----n~Lf~lsh~LV~~yP~~a 312 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIA----CLYEL-GKS-----NKLFLLSHKLVDLYPSKA 312 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHH----HHHHh-ccc-----chHHHHHHHHHHhCCCCC
Confidence 4566666788899999998888888888775 433332222221 11111 111 144444444444333333
Q ss_pred -hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 134 -LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 134 -l~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
-|+ -.|-.|+-.|++++|.+++.+.-.. |+ .--.-.+.-...+...+...+|-.+|..|-+.-
T Consensus 313 ~sW~----aVg~YYl~i~k~seARry~SKat~l--------D~----~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~ 376 (611)
T KOG1173|consen 313 LSWF----AVGCYYLMIGKYSEARRYFSKATTL--------DP----TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM 376 (611)
T ss_pred cchh----hHHHHHHHhcCcHHHHHHHHHHhhc--------Cc----cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc
Confidence 243 3466777778888888888765433 31 122333334455666677788877877776554
Q ss_pred ccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
....-|. ++.|.=|+..++++-|-++|.+|+..
T Consensus 377 ~G~hlP~------LYlgmey~~t~n~kLAe~Ff~~A~ai 409 (611)
T KOG1173|consen 377 PGCHLPS------LYLGMEYMRTNNLKLAEKFFKQALAI 409 (611)
T ss_pred cCCcchH------HHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 4443353 23366666677888888888888654
No 325
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=53.55 E-value=2.2e+02 Score=27.62 Aligned_cols=172 Identities=13% Similarity=0.175 Sum_probs=94.1
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMD-AYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e-~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (430)
.+|+....+.|..+++.-.++++| -..=.++..+..+.|+....+. .+.++.++.++. .-..+...+.+.+.-+.+.
T Consensus 45 asD~~~~~kvl~~i~dLl~S~~~~-~~Lneql~~L~kKhGQlk~sI~~MIq~vmEylKg~-~dl~t~i~~ietlr~VtEg 122 (439)
T COG5071 45 ASDTSTNTKVLIYIADLLFSAGDF-QGLNEQLVSLFKKHGQLKQSITSMIQHVMEYLKGI-DDLKTKINLIETLRTVTEG 122 (439)
T ss_pred hccHHHHHHHHHHHHHHHhhcCch-hhhhhHHHHHHHHcchHHHHHHHHHHHHHHhccCc-ccccchHhHHHHHHHHhcC
Confidence 447888888998888754444444 1122456677788888877775 456666665332 1112222222222222221
Q ss_pred C----CCC---hhHHHHHHH---HHHHHHHHh--------hhhhhHHHHhHHHHH--HHHHhccHHHHHHHHHHHHhhcc
Q 014143 108 A----SQN---FSLLREFYQ---TTLKALEEA--------KNERLWFKTNLKLCK--IWFDMGEYGRMSKILKELHKSCQ 167 (430)
Q Consensus 108 ~----~~~---~~~~~~~~~---~~~e~l~~~--------~~~kl~~r~~~~La~--~~~~~g~~~~A~~~l~el~~~~~ 167 (430)
. ... .+.+.+.++ .+.+..+-. +.-+...++...|-+ +....|||-.|.-+..++++.+.
T Consensus 123 kIFvEvERariT~~L~~ikee~Gdi~sA~Dilcn~pVETygs~~~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kKI~KK~F 202 (439)
T COG5071 123 KIFVEVERARLTQLLSQIKEEQGDIKSAQDILCNEPVETYGSFDLSEKVAFILEQVRLFLLRSDYYMASTYTKKINKKFF 202 (439)
T ss_pred ceEEehhHHHHHHHHHHHHHHhcchhHHHHHHhcCchhhccchhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHh
Confidence 1 000 001111111 111111110 111112244333333 34567999999999999999887
Q ss_pred CCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 014143 168 REDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 207 (430)
Q Consensus 168 ~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~ 207 (430)
..+.. .++++++|-+-+++.+..+.|-.+..+|+.
T Consensus 203 e~~d~-----~slKlkyYeL~V~i~Lh~R~Yl~v~~y~~~ 237 (439)
T COG5071 203 EKEDV-----QSLKLKYYELKVRIGLHDRAYLDVCKYYRA 237 (439)
T ss_pred ccccH-----HHHHHHHHHHhheeecccHHHHHHHHHHHH
Confidence 65422 478899999988988888878777766654
No 326
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=53.21 E-value=1.1e+02 Score=26.70 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=39.5
Q ss_pred HHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEcc
Q 014143 344 QVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (430)
Q Consensus 344 ~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (430)
.-+..-.+||+...+..=-.. +++...|.+.|-.|..+|+|.++ +.+...|++..
T Consensus 8 ~y~~~qNRPys~~di~~nL~~-~~~K~~v~k~Ld~L~~~g~i~~K-~~GKqkiY~~~ 62 (169)
T PF07106_consen 8 EYMKEQNRPYSAQDIFDNLHN-KVGKTAVQKALDSLVEEGKIVEK-EYGKQKIYFAN 62 (169)
T ss_pred HHHHHcCCCCcHHHHHHHHHh-hccHHHHHHHHHHHHhCCCeeee-eecceEEEeeC
Confidence 344445688876665433222 68899999999999999999998 46666776653
No 327
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=52.76 E-value=32 Score=24.97 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=26.6
Q ss_pred ccchhhHHhHhCCC-hHHHHHHHHHhhhcCcee
Q 014143 355 RIRIPFISKELNVP-EKDVEQLLVSLILDNRID 386 (430)
Q Consensus 355 ~I~l~~lA~~l~l~-~~evE~~l~~lI~~g~i~ 386 (430)
.-|+.+||+.+|+. ..-|-..|..|...|.|.
T Consensus 25 ~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 25 PPTVREIAEALGLKSTSTVQRHLKALERKGYIR 57 (65)
T ss_dssp ---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHhCCCChHHHHHHHHHHHHCcCcc
Confidence 45999999999996 999999999999988774
No 328
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=52.19 E-value=1.2e+02 Score=25.34 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=39.8
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEE
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (430)
..++..+||+.++++..-+=..|-+|...|.|.=..|..++....
T Consensus 53 ~~~t~~eLa~~l~i~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~ 97 (144)
T PRK11512 53 ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVL 97 (144)
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCcccCCeeE
Confidence 469999999999999999999999999999999888877764443
No 329
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=52.17 E-value=24 Score=33.09 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=39.8
Q ss_pred HHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcee
Q 014143 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 342 ~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
|...|+.+++....++..+||+.+|++..-+.+.|..|-..|.+.
T Consensus 6 R~~~Il~~l~~~~~~~~~ela~~l~vS~~TirRdL~~Le~~g~i~ 50 (251)
T PRK13509 6 RHQILLELLAQLGFVTVEKVIERLGISPATARRDINKLDESGKLK 50 (251)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 455677888888999999999999999999999999998888874
No 330
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=52.15 E-value=38 Score=28.11 Aligned_cols=64 Identities=16% Similarity=0.269 Sum_probs=48.2
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccC-CEEEEccCCccchHHHHHHHHHHHHHHH
Q 014143 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN-RLLERGDRSKGMKKYTAIDKWNSQLRSL 421 (430)
Q Consensus 346 l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~-g~v~~~~~~~~~~~~~~l~~w~~~v~~l 421 (430)
|..+++---++|+..++..+|++-.-++..+.+|+..|.|.- ++. |+ |.+ .++..+|.+.-+++
T Consensus 17 IvElVRe~GRiTi~ql~~~TGasR~Tvk~~lreLVa~G~l~~---~G~~Gv--F~s-------eqA~~dw~~~~~~~ 81 (127)
T PF06163_consen 17 IVELVREHGRITIKQLVAKTGASRNTVKRYLRELVARGDLYR---HGRSGV--FPS-------EQARKDWDKARKKL 81 (127)
T ss_pred HHHHHHHcCCccHHHHHHHHCCCHHHHHHHHHHHHHcCCeEe---CCCccc--ccc-------HHHHHHHHHhHHhh
Confidence 456677789999999999999999999999999999998852 122 32 222 25566777766655
No 331
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=52.06 E-value=63 Score=33.01 Aligned_cols=64 Identities=13% Similarity=0.039 Sum_probs=48.8
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
..++|..|...|+|++|...++.....-.+ + ...-..+...+..|..+|++.+|...+++|...
T Consensus 78 ~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-----~----aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 78 AVNLGLSLFSKGRVKDALAQFETALELNPN-----P----DEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----c----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 458999999999999999999998777321 1 000023455667888999999999999999765
No 332
>PF12728 HTH_17: Helix-turn-helix domain
Probab=51.94 E-value=52 Score=22.04 Aligned_cols=38 Identities=13% Similarity=0.167 Sum_probs=27.2
Q ss_pred cchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 356 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 356 I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
+|.+++|+.||++...+. +++..|.|.+. ...+...+.
T Consensus 2 lt~~e~a~~l~is~~tv~----~~~~~g~i~~~--~~g~~~~~~ 39 (51)
T PF12728_consen 2 LTVKEAAELLGISRSTVY----RWIRQGKIPPF--KIGRKWRIP 39 (51)
T ss_pred CCHHHHHHHHCcCHHHHH----HHHHcCCCCeE--EeCCEEEEe
Confidence 578899999999987766 55578888776 344444443
No 333
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=51.93 E-value=1.3e+02 Score=25.30 Aligned_cols=51 Identities=22% Similarity=0.142 Sum_probs=39.3
Q ss_pred HhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 348 KLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 348 ~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
.+...-..++++.||+.++++..-|-..|.+|...|.|.-. ..+.+..++.
T Consensus 15 ~l~~~~~~~~~~ela~~l~vs~~svs~~l~~L~~~Gli~~~---~~~~i~LT~~ 65 (142)
T PRK03902 15 LLIEEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLTPK 65 (142)
T ss_pred HHHhcCCCcCHHHHHHHhCCChhHHHHHHHHHHHCCCEEEe---cCceEEECHH
Confidence 34444466788999999999999999999999999988632 2355777654
No 334
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=51.85 E-value=17 Score=28.96 Aligned_cols=48 Identities=17% Similarity=0.095 Sum_probs=29.4
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEe--eeccCCEEEEcc
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH--IDQVNRLLERGD 400 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~--IDq~~g~v~~~~ 400 (430)
...++-++||+.+|++..++-+.+.+|-.+|.+..+ =|...|.-...|
T Consensus 25 ~~~l~de~la~~~~l~~~~vRkiL~~L~~~~lv~~~~~~d~~~~~~~~yw 74 (105)
T PF02002_consen 25 KGELTDEDLAKKLGLKPKEVRKILYKLYEDGLVSYRRRKDDERGWTRYYW 74 (105)
T ss_dssp H--B-HHHHHHTT-S-HHHHHHHHHHHHHHSS-EEEEE--------EEEE
T ss_pred cCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeEEEEEEcCCCcEEEEEE
Confidence 467889999999999999999999999999999653 343444444444
No 335
>PF13041 PPR_2: PPR repeat family
Probab=51.82 E-value=31 Score=23.00 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014143 55 KALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (430)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (430)
-++..++..|.+.|+++++.++++.+.+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 45677899999999999999999999864
No 336
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=51.77 E-value=57 Score=27.86 Aligned_cols=74 Identities=12% Similarity=0.064 Sum_probs=47.9
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHhhhcCceeE--e--eeccCC-EEEEccCCccchHHHHHHHHHHHHHHHHHHHh
Q 014143 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG--H--IDQVNR-LLERGDRSKGMKKYTAIDKWNSQLRSLYQTVS 426 (430)
Q Consensus 352 ~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g--~--IDq~~g-~v~~~~~~~~~~~~~~l~~w~~~v~~l~~~v~ 426 (430)
+...++=++||+.+|++..+|-+.|.+|-.+|.+.. + -|..+| .....|--.-. ...+.--.++.++...++
T Consensus 12 ~~~~~~dedLa~~l~i~~n~vRkiL~~L~ed~~~~~~~~~e~~~~~~~~~~~yw~i~y~---~~~~vik~r~~~~~~~L~ 88 (147)
T smart00531 12 RNGCVTEEDLAELLGIKQKQLRKILYLLYDEKLIKIDYKREKDPETKTWYRYYWYINYD---TLLDVVKYKLDKMRKRLE 88 (147)
T ss_pred hcCCcCHHHHHHHhCCCHHHHHHHHHHHHhhhcchhheeeeeCCCCceEEEEEEEecHH---HHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999999877532 2 455566 55555532211 112222344555555554
Q ss_pred hh
Q 014143 427 NR 428 (430)
Q Consensus 427 ~~ 428 (430)
++
T Consensus 89 ~~ 90 (147)
T smart00531 89 DK 90 (147)
T ss_pred HH
Confidence 44
No 337
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=51.04 E-value=38 Score=22.69 Aligned_cols=29 Identities=14% Similarity=0.344 Sum_probs=24.9
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhh
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~ 381 (430)
+...|+.+||+.+|+|...|-....+++.
T Consensus 18 ~~~~t~~eIa~~lg~s~~~V~~~~~~al~ 46 (50)
T PF04545_consen 18 FEGLTLEEIAERLGISRSTVRRILKRALK 46 (50)
T ss_dssp TST-SHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 78899999999999999999888877764
No 338
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=50.57 E-value=25 Score=33.02 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=40.4
Q ss_pred HHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcee
Q 014143 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 342 ~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
|...|+.+++-...+++.+||+.|++|..-+-+.|..|-..|.+.
T Consensus 6 R~~~Il~~l~~~~~~~~~ela~~l~vS~~TiRRdL~~Le~~g~l~ 50 (252)
T PRK10906 6 RHDAIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNDLAEQNKIL 50 (252)
T ss_pred HHHHHHHHHHHcCCEeHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 566778888888999999999999999999999999999998873
No 339
>PF13730 HTH_36: Helix-turn-helix domain
Probab=50.49 E-value=21 Score=24.44 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=27.0
Q ss_pred cchhhHHhHhCCChHHHHHHHHHhhhcCce
Q 014143 356 IRIPFISKELNVPEKDVEQLLVSLILDNRI 385 (430)
Q Consensus 356 I~l~~lA~~l~l~~~evE~~l~~lI~~g~i 385 (430)
-|.+.||+.+|++..-|.+.+..+...|-|
T Consensus 26 pS~~~la~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 26 PSQETLAKDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCC
Confidence 378999999999999999999999988754
No 340
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=49.62 E-value=2.3e+02 Score=26.77 Aligned_cols=101 Identities=12% Similarity=0.164 Sum_probs=60.3
Q ss_pred hHHHHhHHHHHHHHHhccHH---HHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014143 134 LWFKTNLKLCKIWFDMGEYG---RMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (430)
Q Consensus 134 l~~r~~~~La~~~~~~g~~~---~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~ 210 (430)
+.+++.+-||..|++.+.++ +|.+++..+..+.. .+.+++...+++....++...+...+...-.
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~------------~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYG------------NKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC------------CCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 56677888999999988765 56677777766643 2456666666777667777777777665532
Q ss_pred hhccCCCchhHHHHHHhhhHh-hhhhhcHHHHHHHHHHHHHh
Q 014143 211 IKSAIPHPRIMGIIRECGGKM-HMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~g~~-~~~~~~y~~A~~~f~ea~~~ 251 (430)
..+. ++.. +..+...+ .+.+.+...|+..+...+.+
T Consensus 150 ~~~~-~e~~----~~~~l~~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 150 SVDH-SESN----FDSILHHIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred hccc-ccch----HHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 2110 1111 22211222 23455566777777777643
No 341
>PF12854 PPR_1: PPR repeat
Probab=49.46 E-value=29 Score=21.32 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 014143 54 FKALKQTVKLYYRLGKYKEMMDAYREM 80 (430)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l 80 (430)
.-.+..++.-|.+.|+.+++.+++..+
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 456788999999999999999988754
No 342
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=49.45 E-value=19 Score=32.10 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=39.2
Q ss_pred HHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCce
Q 014143 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRI 385 (430)
Q Consensus 342 ~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i 385 (430)
|.+.|+.++.-...+++.+||+.||+|..-+-+-|..|-.+|++
T Consensus 8 R~~~Il~~l~~~~~~~~~~La~~~~vS~~TiRRDl~~L~~~g~~ 51 (185)
T PRK04424 8 RQKALQELIEENPFITDEELAEKFGVSIQTIRLDRMELGIPELR 51 (185)
T ss_pred HHHHHHHHHHHCCCEEHHHHHHHHCcCHHHHHHHHHHHhcchHH
Confidence 66677888888999999999999999999999999988888876
No 343
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=49.21 E-value=52 Score=24.49 Aligned_cols=32 Identities=9% Similarity=0.114 Sum_probs=31.0
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCcee
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
++|++++-+.+|++.+.+--.|++|-..|.|.
T Consensus 18 c~TLeeL~ekTgi~k~~LlV~LsrL~k~GiI~ 49 (72)
T PF05584_consen 18 CCTLEELEEKTGISKNTLLVYLSRLAKRGIIE 49 (72)
T ss_pred cCCHHHHHHHHCCCHHHHHHHHHHHHHCCCee
Confidence 99999999999999999999999999999985
No 344
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=48.86 E-value=97 Score=26.25 Aligned_cols=62 Identities=23% Similarity=0.334 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 014143 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI 97 (430)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v 97 (430)
+.++|++.|.+.+..-|+ ..-++++=++.+.-+|+-+++++-+..-++.- +..++.+-..-|
T Consensus 58 ~Ld~AlE~F~qal~l~P~----raSayNNRAQa~RLq~~~e~ALdDLn~AleLa-g~~trtacqa~v 119 (175)
T KOG4555|consen 58 DLDGALELFGQALCLAPE----RASAYNNRAQALRLQGDDEEALDDLNKALELA-GDQTRTACQAFV 119 (175)
T ss_pred chHHHHHHHHHHHHhccc----chHhhccHHHHHHHcCChHHHHHHHHHHHHhc-CccchHHHHHHH
Confidence 567777777777666543 24556666677777777777777777776665 333444433333
No 345
>PRK10870 transcriptional repressor MprA; Provisional
Probab=47.47 E-value=2e+02 Score=25.29 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=38.9
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEE
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLE 397 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~ 397 (430)
..++..+||+.++++..-+-..|-+|...|.|.=.-|..++.+.
T Consensus 70 ~~it~~eLa~~l~l~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~ 113 (176)
T PRK10870 70 HSIQPSELSCALGSSRTNATRIADELEKRGWIERRESDNDRRCL 113 (176)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCee
Confidence 46888999999999999999999999999999988887776443
No 346
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=47.44 E-value=46 Score=21.34 Aligned_cols=22 Identities=18% Similarity=0.510 Sum_probs=11.1
Q ss_pred hHhhhhhhcHHHHHHHHHHHHH
Q 014143 229 GKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 229 g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
|.+.+...+|..|...|..+.+
T Consensus 8 geisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 8 GEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444455555555555555543
No 347
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=47.27 E-value=1.8e+02 Score=31.25 Aligned_cols=125 Identities=15% Similarity=0.275 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCC--
Q 014143 33 EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ-- 110 (430)
Q Consensus 33 ~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~-- 110 (430)
...|+...+++....+. +....++.+.+.-+-+.|++++++.+|...-.+ ..+..+++..+...-..++.
T Consensus 394 ~G~i~~~~~Li~~~~~~-~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~-------d~vl~lln~~Ls~~l~~~~~~~ 465 (613)
T PF04097_consen 394 PGLIERRLSLIKFDDDE-DFLREIIEQAAREAEERGRFEDAILLYHLAEEY-------DKVLSLLNRLLSQVLSQPSSSS 465 (613)
T ss_dssp E-HHHHTGGGGT-SSSS-HHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-H-------HHHHHHHHHHHHHHHHCSSTSS
T ss_pred cceeeccccccCCCCcH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHcCccccc
Confidence 45555555555443222 224678888888899999999999888765443 12334444444432221221
Q ss_pred ----ChhHHHHHHHHHHHHHHHh--------hhhhhHHHHhHHHHHH--HHHhccHHHHHHHHHHHHhh
Q 014143 111 ----NFSLLREFYQTTLKALEEA--------KNERLWFKTNLKLCKI--WFDMGEYGRMSKILKELHKS 165 (430)
Q Consensus 111 ----~~~~~~~~~~~~~e~l~~~--------~~~kl~~r~~~~La~~--~~~~g~~~~A~~~l~el~~~ 165 (430)
..+....+-..+.+..+.. ...+-.+.+.++++++ ++..|+|++|++.+.++.-.
T Consensus 466 ~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~li 534 (613)
T PF04097_consen 466 LSDSERERLIELAKEILERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLI 534 (613)
T ss_dssp SSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S
T ss_pred cccchhhhHHHHHHHHHHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Confidence 1111222222222222211 1112334566677777 45779999999999998754
No 348
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=47.00 E-value=35 Score=21.90 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc
Q 014143 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 183 e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
++|.....+.+..+||+.|..=|.+|..+...+.+|
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 567788888999999999999998888776655443
No 349
>PF10771 DUF2582: Protein of unknown function (DUF2582); InterPro: IPR019707 This entry represents conserved proteins found in bacteria and archaea. The function is not known. ; PDB: 2L02_B 2L01_A.
Probab=46.48 E-value=65 Score=23.46 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=39.4
Q ss_pred HhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEE
Q 014143 348 KLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (430)
Q Consensus 348 ~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (430)
++...-...|++.|++..+++.+++-.-|.=+..+++|. +++.+|.+.+
T Consensus 15 ~~L~~~~~~s~~el~k~~~l~~~~~~~AiGWLarE~KI~--~~~~~~~~~v 63 (65)
T PF10771_consen 15 QLLNENGEWSVSELKKATGLSDKEVYLAIGWLARENKIE--FEEKNGELYV 63 (65)
T ss_dssp HHHCCSSSEEHHHHHHHCT-SCHHHHHHHHHHHCTTSEE--EEEETTEEEE
T ss_pred HHHhhCCCcCHHHHHHHhCcCHHHHHHHHHHHhccCcee--EEeeCCEEEE
Confidence 344446789999999999999999999999999999984 5577776665
No 350
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=46.32 E-value=74 Score=24.66 Aligned_cols=67 Identities=16% Similarity=0.297 Sum_probs=44.6
Q ss_pred HHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC
Q 014143 35 ALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (430)
Q Consensus 35 Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (430)
.++.+++-++.+|++ ..+..+++..+...|+++++++.+-.++..- +.-.....-+.+-.+++.+..
T Consensus 7 ~~~al~~~~a~~P~D----~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d-r~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDD----LDARYALADALLAAGDYEEALDQLLELVRRD-RDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccccccHHHHHHHHHHHHcCC
Confidence 455566666666655 5777889999999999999999887777654 333445555666666666653
No 351
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=45.17 E-value=36 Score=24.35 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=24.5
Q ss_pred HHhcccccccchhhHHhHhCCChHHHHHHHHH
Q 014143 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVS 378 (430)
Q Consensus 347 ~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~ 378 (430)
.-+.+.=-.|++.+||+.||++...|..+=++
T Consensus 14 e~y~~~~g~i~lkdIA~~Lgvs~~tIr~WK~~ 45 (60)
T PF10668_consen 14 EIYKESNGKIKLKDIAEKLGVSESTIRKWKSR 45 (60)
T ss_pred HHHHHhCCCccHHHHHHHHCCCHHHHHHHhhh
Confidence 33444446899999999999999988776554
No 352
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=44.64 E-value=38 Score=30.68 Aligned_cols=45 Identities=18% Similarity=0.391 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHH
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEM 73 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l 73 (430)
+.|+++|+..|..+++...++..-....+..|+.++.++|+++.+
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 346677777777777765432222355666777777777777654
No 353
>PHA02943 hypothetical protein; Provisional
Probab=44.25 E-value=2.1e+02 Score=24.70 Aligned_cols=55 Identities=15% Similarity=0.085 Sum_probs=43.2
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCC
Q 014143 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (430)
Q Consensus 346 l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (430)
++.++ -.-.-+.++||+.+|+|..+|+..|--+=.+|.+.- +-++...+..-.++
T Consensus 16 ILE~L-k~G~~TtseIAkaLGlS~~qa~~~LyvLErEG~Vkr-V~~G~~tyw~l~~d 70 (165)
T PHA02943 16 TLRLL-ADGCKTTSRIANKLGVSHSMARNALYQLAKEGMVLK-VEIGRAAIWCLDED 70 (165)
T ss_pred HHHHH-hcCCccHHHHHHHHCCCHHHHHHHHHHHHHcCceEE-EeecceEEEEEChH
Confidence 44455 556778999999999999999999999999999964 45666666665553
No 354
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=43.61 E-value=35 Score=32.06 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=41.1
Q ss_pred HHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcee
Q 014143 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 342 ~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
|.+-|+++++.-..|++++||+.|++|+.-+.+-|..|=..|.+.
T Consensus 6 R~~~Il~~l~~~g~v~v~eLa~~~~VS~~TIRRDL~~Le~~g~l~ 50 (253)
T COG1349 6 RHQKILELLKEKGKVSVEELAELFGVSEMTIRRDLNELEEQGLLL 50 (253)
T ss_pred HHHHHHHHHHHcCcEEHHHHHHHhCCCHHHHHHhHHHHHHCCcEE
Confidence 677888999899999999999999999999999999998888774
No 355
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=43.27 E-value=77 Score=28.56 Aligned_cols=47 Identities=11% Similarity=0.028 Sum_probs=37.0
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 352 ~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
....++..+||+.+|++..-+-..|.+|...|.+.-.-+ ....+.++
T Consensus 154 ~~g~~s~~eia~~l~is~stv~r~L~~Le~~GlI~r~~~-r~~~~~lT 200 (203)
T TIGR01884 154 AEGEKSVKNIAKKLGKSLSTISRHLRELEKKGLVEQKGR-KGKRYSLT 200 (203)
T ss_pred HcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcC-CccEEEeC
Confidence 335699999999999999999999999999999875433 33444444
No 356
>PF04760 IF2_N: Translation initiation factor IF-2, N-terminal region; InterPro: IPR006847 This region is found in the N-terminal half of translation initiation factor IF-2. It is found in two copies in IF-2 alpha isoforms, and in only one copy in the N-terminally truncated beta and gamma isoforms []. Its function is unknown.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1ND9_A.
Probab=43.15 E-value=25 Score=24.19 Aligned_cols=37 Identities=32% Similarity=0.565 Sum_probs=23.4
Q ss_pred ccchhhHHhHhCCChHHHHHHHHH-hhhc-CceeEeeec
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVS-LILD-NRIDGHIDQ 391 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~-lI~~-g~i~g~IDq 391 (430)
.+++.+||+.+|+|+.++=..+.+ +=.. ...+..||.
T Consensus 3 ~i~V~elAk~l~v~~~~ii~~l~~~~Gi~~~~~~~~ld~ 41 (54)
T PF04760_consen 3 KIRVSELAKELGVPSKEIIKKLFKELGIMVKSINSSLDE 41 (54)
T ss_dssp EE-TTHHHHHHSSSHHHHHHHH-HHHTS---SSSS-EET
T ss_pred ceEHHHHHHHHCcCHHHHHHHHHHhCCcCcCCCCCcCCH
Confidence 578999999999999998888844 4322 333444443
No 357
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=43.13 E-value=3.8e+02 Score=27.29 Aligned_cols=200 Identities=15% Similarity=0.188 Sum_probs=102.3
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHH-HhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhh----------
Q 014143 186 AIEIQMYTETKNNKKLKQLYQKA-LAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE---------- 254 (430)
Q Consensus 186 l~~~~l~~~~~d~~ka~~~l~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~---------- 254 (430)
+-..|++..+||+.-.-+.++-- +.+-+.+ |-.+-. .+-|-.|+.-|+|.+|.+-|..+.-.-..
T Consensus 239 ~GLlR~H~lLgDhQat~q~idi~pk~iy~t~--p~c~VT--Y~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~y 314 (525)
T KOG3677|consen 239 LGLLRMHILLGDHQATSQILDIMPKEIYGTE--PMCRVT--YQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTTY 314 (525)
T ss_pred HHHHHHHHHhhhhHhhhhhhhcCchhhcCcc--cceeEe--eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 33468888899954322222211 1111111 222222 34488889999999999999988532111
Q ss_pred --h-cchhHHHHHHHHHHHHHhhCCCCC-CCCccccccCCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHh-------
Q 014143 255 --A-GNQRRIQCLKYLVLANMLMESEVN-PFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKT------- 323 (430)
Q Consensus 255 --~-~~~~~~~~lky~~l~~lL~~~~~~-~~~~~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~------- 323 (430)
. .+.++-+....+.+|-.+.+..++ .+.++..-.|. +|-+ --.+++...|.+...--.+.
T Consensus 315 ~~d~inKq~eqm~~llai~l~~yPq~iDESi~s~l~Ek~~-d~ml--------~mqng~~q~~ks~f~y~cpkflsp~~~ 385 (525)
T KOG3677|consen 315 QYDMINKQNEQMHHLLAICLSMYPQMIDESIHSQLAEKYG-DKML--------PMQNGDPQVFKSLFSYLCPKFLSPVVP 385 (525)
T ss_pred hHhhhhhhHHHHHHHHHHHHHhCchhhhHHHHHHHHHHhc-chhh--------hhhcCChHHHHHHHHHcCccccCCCCc
Confidence 0 111222222223333333322222 12222111121 1110 01346666666544332221
Q ss_pred --------hcCChhHHHHHHHHHHHHHHH----HHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhh----------
Q 014143 324 --------IMDDPFIRNYIEDLLKNVRTQ----VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLIL---------- 381 (430)
Q Consensus 324 --------l~~D~~l~~~~~~L~~~i~~~----~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~---------- 381 (430)
...+|++++ +..+.+.+..+ .++.+.+-|++....-+|..++++.++=.+.+.+++.
T Consensus 386 ~~dgv~~~y~kePl~~q-lq~fld~v~qq~dl~~~rsylklyTt~P~kkla~F~D~~d~~~dk~li~Ll~~khkm~nlv~ 464 (525)
T KOG3677|consen 386 NYDGVLPNYHKEPLLQQ-LQVFLDEVSQQADLPTIRSYLKLYTTLPVKKLASFLDLTDQERDKFLIQLLVFKHKMKNLVW 464 (525)
T ss_pred ccccccccccccHHHHH-HHHHhHHHhhhccchHHHHHHHHHHhccHHHhhhccCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 225666544 33344444443 6777788899999999999999998887777777765
Q ss_pred -cCceeEeee-ccCCEEEEc
Q 014143 382 -DNRIDGHID-QVNRLLERG 399 (430)
Q Consensus 382 -~g~i~g~ID-q~~g~v~~~ 399 (430)
.|.....++ ++..-|-|.
T Consensus 465 ~sg~s~~d~~f~~~s~idfy 484 (525)
T KOG3677|consen 465 TSGPSDLDDAFFSRSEIDFY 484 (525)
T ss_pred hcCCccccccccCcceeeEE
Confidence 444444554 334455554
No 358
>TIGR02844 spore_III_D sporulation transcriptional regulator SpoIIID. Members of this protein are the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if and only if the species is capable of endospore formation as occurs in the model species Bacillus subtilis. SpoIIID is a DNA binding protein that, in B. subtilis, downregulates many genes but also turns on ten genes.
Probab=42.61 E-value=37 Score=25.83 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=28.0
Q ss_pred HHHHHHHhcccccccchhhHHhHhCCChHHHHHHH
Q 014143 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLL 376 (430)
Q Consensus 342 ~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l 376 (430)
|.+-|++++.- .++++.+||+.+|++..-|-..+
T Consensus 7 R~~~I~e~l~~-~~~ti~dvA~~~gvS~~TVsr~L 40 (80)
T TIGR02844 7 RVLEIGKYIVE-TKATVRETAKVFGVSKSTVHKDV 40 (80)
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHhCCCHHHHHHHh
Confidence 45566777777 99999999999999998877644
No 359
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.46 E-value=1.2e+02 Score=21.54 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=25.9
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014143 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~ 166 (430)
|.-+.-.+....-+.+.|++++|.+++.++...+
T Consensus 20 RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~~ 53 (62)
T PF14689_consen 20 RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKDL 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4444445577788999999999999999988764
No 360
>PF04492 Phage_rep_O: Bacteriophage replication protein O ; InterPro: IPR006497 This entry is represented by the N-terminal domain of Bacteriophage lambda, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0006260 DNA replication
Probab=41.66 E-value=67 Score=25.57 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=33.0
Q ss_pred ccccccchhhHHhHhCCChHHHHHHHHHhhhcCce
Q 014143 351 KPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRI 385 (430)
Q Consensus 351 ~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i 385 (430)
++..+|+.+.+|++.|++.+.|.+.+..+|..|.|
T Consensus 50 Kk~d~Is~sq~~e~tg~~~~~V~~al~~Li~~~vI 84 (100)
T PF04492_consen 50 KKMDRISNSQIAEMTGLSRDHVSKALNELIRRGVI 84 (100)
T ss_pred CccceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 55689999999999999999999999999999998
No 361
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=41.08 E-value=80 Score=24.41 Aligned_cols=38 Identities=8% Similarity=-0.062 Sum_probs=35.0
Q ss_pred ccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEe
Q 014143 351 KPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (430)
Q Consensus 351 ~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~ 388 (430)
..|+-||.+-+|++++++..-+...|..|-..|.|.-.
T Consensus 37 ~~~K~ITps~lserlkI~~SlAr~~Lr~L~~kG~Ik~V 74 (86)
T PRK09334 37 KKEKIVTPYTLASKYGIKISVAKKVLRELEKRGVLVLY 74 (86)
T ss_pred ccCcEEcHHHHHHHhcchHHHHHHHHHHHHHCCCEEEE
Confidence 34999999999999999999999999999999999765
No 362
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=41.00 E-value=5.2e+02 Score=28.35 Aligned_cols=63 Identities=13% Similarity=0.212 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 182 LEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 182 ~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
..+.+..+.++...++-..+..++..+.++- .+.+..+...|..+...|++.+|...|..+..
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKID------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcc------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 5566677778888899999998888887642 23455667789999999999999999998853
No 363
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=40.74 E-value=4.9e+02 Score=27.92 Aligned_cols=66 Identities=11% Similarity=0.247 Sum_probs=45.3
Q ss_pred HHHHHhhcccCCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHH
Q 014143 18 VLCSILEKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGK----------YKEMMDAYREMLTYI 84 (430)
Q Consensus 18 ~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~----------~~~l~e~~~~l~~~~ 84 (430)
...+..+++=+..|..+-++.++.+......... ..+++-.++...|+.+. |....+.+..++..+
T Consensus 221 L~eIv~sRGKK~TDr~eqI~~L~~L~~ia~~~~~-~i~Il~~lIsa~FD~~~~~~~~M~~~~W~~~~~~i~~Ll~lL 296 (595)
T PF05470_consen 221 LKEIVESRGKKGTDRQEQIRQLEKLLEIAKTPYQ-KIEILLHLISARFDYNSSISDYMPIEQWKKCLNNINELLDLL 296 (595)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHHHcCccc-chhHHHhhhHHHHccCCccccCcCHHHHHHHHHHHHHHHHHH
Confidence 4456677777777888888888887765432222 57788888877776554 777777777777765
No 364
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=40.44 E-value=2.2e+02 Score=25.36 Aligned_cols=48 Identities=8% Similarity=-0.135 Sum_probs=39.0
Q ss_pred hcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEE
Q 014143 349 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLL 396 (430)
Q Consensus 349 i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v 396 (430)
++.....++.++||+.++++..-+=..|.+|-..|.|.=..|..++..
T Consensus 53 ~L~~~~~itq~eLa~~l~l~~sTvtr~l~rLE~kGlI~R~~~~~DrR~ 100 (185)
T PRK13777 53 IAYHLKGASISEIAKFGVMHVSTAFNFSKKLEERGYLTFSKKEDDKRN 100 (185)
T ss_pred HHHhCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCCCCCCe
Confidence 333345799999999999999999999999999999986666666543
No 365
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=40.24 E-value=4.4e+02 Score=27.23 Aligned_cols=103 Identities=8% Similarity=-0.068 Sum_probs=62.2
Q ss_pred hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014143 130 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (430)
Q Consensus 130 ~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~ 209 (430)
+++.+|+ .--|+++...|+.++|.+.+++.-... .+ ++....-.+-+.+-.+..+.||.+|..++....
T Consensus 264 P~s~lfl---~~~gR~~~~~g~~~~Ai~~~~~a~~~q------~~--~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 264 PNSALFL---FFEGRLERLKGNLEEAIESFERAIESQ------SE--WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred CCcHHHH---HHHHHHHHHhcCHHHHHHHHHHhccch------hh--HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 4555552 356788888999999999999654211 11 123333344555666888899999988877664
Q ss_pred hhhccCCCchhHHHHHHhhhHhhhhhhcH-------HHHHHHHHHH
Q 014143 210 AIKSAIPHPRIMGIIRECGGKMHMAERQW-------ADAATDFFEA 248 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~y-------~~A~~~f~ea 248 (430)
+.++ + -.+.+....|..+...++- ++|...|.++
T Consensus 333 ~~s~----W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 333 KESK----W-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred hccc----c-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 3221 1 2444544455555555544 5566666555
No 366
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=39.81 E-value=3.5e+02 Score=30.01 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=21.3
Q ss_pred HHhHHHHHHHH--HhccHHHHHHHHHHHHhh
Q 014143 137 KTNLKLCKIWF--DMGEYGRMSKILKELHKS 165 (430)
Q Consensus 137 r~~~~La~~~~--~~g~~~~A~~~l~el~~~ 165 (430)
.+.+.+..++. ..|++++|+.+++.++-.
T Consensus 706 ~lLl~~~~~f~~y~~~~~e~aL~~le~l~Li 736 (835)
T KOG2168|consen 706 SLLLDLVSFFDLYHNGEWEEALSILEHLDLI 736 (835)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 34456666643 558899999999998876
No 367
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=39.73 E-value=4.6e+02 Score=27.35 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc--CCCchhHHH-HHHhhhHhhhhhhcHHHHHHHHHHHHHhhh
Q 014143 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSA--IPHPRIMGI-IRECGGKMHMAERQWADAATDFFEAFKNYD 253 (430)
Q Consensus 183 e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~--~~~~~~~~~-~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (430)
...++-+++++..||+++|-..+..+.--... .-.|....+ ++--.|.+|..-+.|.-+..+|..+..++.
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c 314 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC 314 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence 45567788999999999988777654211010 113444433 345678889999999999999999987543
No 368
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=39.68 E-value=73 Score=20.71 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=23.8
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhh
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLI 380 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI 380 (430)
...+...||+.+|++.+.+-..+.+..
T Consensus 25 ~~~~~~~ia~~~~~s~~~i~~~~~~~~ 51 (55)
T cd06171 25 EGLSYEEIAEILGISRSTVRQRLHRAL 51 (55)
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 788999999999999999988887754
No 369
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=39.54 E-value=33 Score=23.34 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=22.1
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHhh
Q 014143 352 PYTRIRIPFISKELNVPEKDVEQLLVSLI 380 (430)
Q Consensus 352 ~Y~~I~l~~lA~~l~l~~~evE~~l~~lI 380 (430)
.+...+..+||+.+|+|+..|...+.+..
T Consensus 23 ~~~g~s~~eIa~~l~~s~~~v~~~l~ra~ 51 (54)
T PF08281_consen 23 YFQGMSYAEIAEILGISESTVKRRLRRAR 51 (54)
T ss_dssp HTS---HHHHHHHCTS-HHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46788999999999999999999988764
No 370
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=39.51 E-value=41 Score=31.56 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=34.5
Q ss_pred HHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhh
Q 014143 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLI 380 (430)
Q Consensus 342 ~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI 380 (430)
|...|+.+++...+++..+||+.||+|+.-+.+-|..|=
T Consensus 8 R~~~I~~~l~~~~~v~v~eLa~~~~VS~~TIRRDL~~Le 46 (252)
T PRK10681 8 RIGQLLQALKRSDKLHLKDAAALLGVSEMTIRRDLNAHS 46 (252)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHhCCCHHHHHHHHHHhh
Confidence 677889999999999999999999999998888888644
No 371
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=39.42 E-value=45 Score=31.65 Aligned_cols=45 Identities=11% Similarity=0.108 Sum_probs=39.7
Q ss_pred HHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcee
Q 014143 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 342 ~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
|...|+.+++...+++..+||+.||+|..-+.+-|..|=..|.+.
T Consensus 18 R~~~Il~~L~~~~~vtv~eLa~~l~VS~~TIRRDL~~Le~~G~l~ 62 (269)
T PRK09802 18 RREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAV 62 (269)
T ss_pred HHHHHHHHHHHcCCEeHHHHHHHHCCCHHHHHHHHHHHHhCCCeE
Confidence 556777788778889999999999999999999999998888875
No 372
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=39.08 E-value=39 Score=23.46 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=28.3
Q ss_pred HHHHhhccc-CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHH
Q 014143 19 LCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTV 61 (430)
Q Consensus 19 ~~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~ 61 (430)
-.||-|=+. +-+++++|.+....+++.+|++.+ .+.|+.++
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q--a~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ--AQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH--HHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH--HHHHHHHH
Confidence 356666554 345799999999999999987644 56666655
No 373
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=38.09 E-value=4e+02 Score=26.47 Aligned_cols=134 Identities=16% Similarity=0.163 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhhcCC-c-------cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 014143 32 PEGALAGFAEVVAME-P-------EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDF 103 (430)
Q Consensus 32 ~~~Ai~~~~~ii~~~-~-------~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~ 103 (430)
+.++-..|..++..- + ....+-..+|-|++.++..+|+...+.+++...+=.++..... ..+...+.
T Consensus 10 Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~-----~F~~~~~~ 84 (360)
T PF04910_consen 10 YQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHP-----SFSPFRSN 84 (360)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH-----Hhhhhhcc
Confidence 455555555554422 2 1245678899999999999999999999999888777333211 11111111
Q ss_pred hcCCCCCChhHHHHHHHHHHHHHHH-hhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHH
Q 014143 104 VSGSASQNFSLLREFYQTTLKALEE-AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL 182 (430)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~e~l~~-~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~ 182 (430)
... ... .+.. ..+.|-++....+........|-+..|.++-+=+...-.. .|+.-..+.+
T Consensus 85 ~~~-g~~--------------rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~----~DP~g~ll~I 145 (360)
T PF04910_consen 85 LTS-GNC--------------RLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPD----EDPLGVLLFI 145 (360)
T ss_pred ccc-Ccc--------------ccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC----CCcchhHHHH
Confidence 111 000 0010 1245777777788999999999999999887777777432 2432234445
Q ss_pred HHHHHHH
Q 014143 183 EVYAIEI 189 (430)
Q Consensus 183 e~~l~~~ 189 (430)
++++..+
T Consensus 146 D~~ALrs 152 (360)
T PF04910_consen 146 DYYALRS 152 (360)
T ss_pred HHHHHhc
Confidence 6655533
No 374
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=38.08 E-value=6.6e+02 Score=28.69 Aligned_cols=197 Identities=12% Similarity=0.107 Sum_probs=114.9
Q ss_pred HHHHHHhhcccCCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 014143 17 RVLCSILEKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (430)
Q Consensus 17 ~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~ 96 (430)
+...++.|......+...|+..|-+.+.+++.- ..+.-.+|.+|++--|...+..+|.+-...= + +-...+
T Consensus 459 e~~~~w~a~~~~rK~~~~al~ali~alrld~~~----apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-a--tdaeaa-- 529 (1238)
T KOG1127|consen 459 ENSEFWVALGCMRKNSALALHALIRALRLDVSL----APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-A--TDAEAA-- 529 (1238)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcccch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-c--hhhhhH--
Confidence 345678888888888999999999998887542 4666778899988777767777776665531 1 111112
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh-h--hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCc
Q 014143 97 INNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE-R--LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTD 173 (430)
Q Consensus 97 v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~-k--l~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~ 173 (430)
..+.+.+...|+ .+.... .++..-+.+..+ + -|+ +.|-.|++.|+...|..-++.-...
T Consensus 530 -aa~adtyae~~~--we~a~~---I~l~~~qka~a~~~k~nW~----~rG~yyLea~n~h~aV~~fQsALR~-------- 591 (1238)
T KOG1127|consen 530 -AASADTYAEEST--WEEAFE---ICLRAAQKAPAFACKENWV----QRGPYYLEAHNLHGAVCEFQSALRT-------- 591 (1238)
T ss_pred -HHHHHHhhcccc--HHHHHH---HHHHHhhhchHHHHHhhhh----hccccccCccchhhHHHHHHHHhcC--------
Confidence 223344444344 222222 232222221111 1 222 3677777888887776555544433
Q ss_pred chhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCch-hHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 174 DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR-IMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 174 d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
|+ --++...-.+..|.+.|-+.-|-...++|.- .+|. .-++++. +.+....|+|++|..-+-+....
T Consensus 592 dP----kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~-----LrP~s~y~~fk~--A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 592 DP----KDYNLWLGLGEAYPESGRYSHALKVFTKASL-----LRPLSKYGRFKE--AVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred Cc----hhHHHHHHHHHHHHhcCceehHHHhhhhhHh-----cCcHhHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHH
Confidence 11 1245555666778888887777666666642 2332 3445554 45666777888877776666443
No 375
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=37.86 E-value=3.7e+02 Score=25.73 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=52.2
Q ss_pred hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 134 l~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
.++.+..++++.+...|.++.+.+.++++-..-+ .-=..+...++.|...|+...|...|+...+.
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp------------~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDP------------YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc------------cchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3447777999999999999999999998876621 12246667788999999999999999887653
No 376
>PF12643 MazG-like: MazG-like family
Probab=37.75 E-value=66 Score=25.52 Aligned_cols=48 Identities=19% Similarity=0.484 Sum_probs=36.0
Q ss_pred hHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCCccchHHHHHHHHHHHHHHHHHHHhhh
Q 014143 360 FISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSLYQTVSNR 428 (430)
Q Consensus 360 ~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~~w~~~v~~l~~~v~~~ 428 (430)
-||..+|++..+++..+.+=+..+..+ +..+.+|..++.+|.+++..|
T Consensus 50 lLa~rLGid~~~lD~~i~~KL~~~~~k---------------------~~~~Ek~~gdls~l~~~l~~r 97 (98)
T PF12643_consen 50 LLADRLGIDFRELDEIIKEKLKKNIEK---------------------YPVLEKWYGDLSKLEQHLKKR 97 (98)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcccc---------------------cchHHHHhccHHHHHHHHhcc
Confidence 489999999888888777755544322 345778888999998888665
No 377
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=37.66 E-value=4.6e+02 Score=26.78 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=47.0
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhh-cchhHHHHHHHHH
Q 014143 190 QMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA-GNQRRIQCLKYLV 268 (430)
Q Consensus 190 ~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~-~~~~~~~~lky~~ 268 (430)
-.|+..++..-|-....++-..+.+.+.|. ++.+.++-....|.+|++.+.-+---|.-. ++..+...+-.+.
T Consensus 236 ~CYL~~rkpdlALnh~hrsI~lnP~~frnH------LrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIkly 309 (569)
T PF15015_consen 236 TCYLRMRKPDLALNHSHRSINLNPSYFRNH------LRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLY 309 (569)
T ss_pred HhhhhcCCCchHHHHHhhhhhcCcchhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHH
Confidence 457777777665554444432222222222 334555666778999999888875555533 3555666676777
Q ss_pred HHHHhh
Q 014143 269 LANMLM 274 (430)
Q Consensus 269 l~~lL~ 274 (430)
.|+++.
T Consensus 310 WqamiE 315 (569)
T PF15015_consen 310 WQAMIE 315 (569)
T ss_pred HHHHHH
Confidence 787764
No 378
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=37.05 E-value=2.6e+02 Score=23.74 Aligned_cols=112 Identities=15% Similarity=0.086 Sum_probs=74.4
Q ss_pred HHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHH
Q 014143 143 CKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMG 222 (430)
Q Consensus 143 a~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~ 222 (430)
|-...+.|+.+.|++........+..- ...|-.-++.+.-+|+..+|-.-+++|....+.- .+.--
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~r------------aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trtac 115 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPER------------ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRTAC 115 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccc------------hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chHHH
Confidence 344557799999999998888877431 1234455667777889999888888887665432 12222
Q ss_pred HHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcchhHHHHH----HHHHHHHH
Q 014143 223 IIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL----KYLVLANM 272 (430)
Q Consensus 223 ~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~l----ky~~l~~l 272 (430)
.-+..-|.++-..|+-..|...|-.+-+ .|++.+..-| .|..+|.=
T Consensus 116 qa~vQRg~lyRl~g~dd~AR~DFe~AA~----LGS~FAr~QLV~lNPYAAlCN~ 165 (175)
T KOG4555|consen 116 QAFVQRGLLYRLLGNDDAARADFEAAAQ----LGSKFAREQLVELNPYAALCNQ 165 (175)
T ss_pred HHHHHHHHHHHHhCchHHHHHhHHHHHH----hCCHHHHHHHHhcChHHHHHHH
Confidence 3345668888888888889888877643 5665433322 37777754
No 379
>PF08280 HTH_Mga: M protein trans-acting positive regulator (MGA) HTH domain; InterPro: IPR013199 Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions [].; PDB: 2WTE_A 3SQN_A.
Probab=37.04 E-value=83 Score=22.09 Aligned_cols=39 Identities=26% Similarity=0.367 Sum_probs=28.3
Q ss_pred HHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhh
Q 014143 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLI 380 (430)
Q Consensus 342 ~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI 380 (430)
|+..|+.+.---..+++.+||+.+|+|..-+...+..+=
T Consensus 6 rq~~Ll~~L~~~~~~~~~ela~~l~~S~rti~~~i~~L~ 44 (59)
T PF08280_consen 6 RQLKLLELLLKNKWITLKELAKKLNISERTIKNDINELN 44 (59)
T ss_dssp HHHHHHHHHHHHTSBBHHHHHHHCTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334455554236889999999999999998888887753
No 380
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=36.91 E-value=3.7e+02 Score=25.45 Aligned_cols=90 Identities=13% Similarity=0.066 Sum_probs=43.6
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHhhhccCCCch
Q 014143 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE-TKNNKKLKQLYQKALAIKSAIPHPR 219 (430)
Q Consensus 141 ~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~-~~d~~ka~~~l~~a~~~~~~~~~~~ 219 (430)
.+..+....+..+.|-.+..+.++. . ....++|..-+.+... .+|...|..+++.+.+.-..
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~--------~----~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~----- 68 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKD--------K----RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS----- 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC--------C----CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcC--------C----CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-----
Confidence 3444555555566666666666532 1 2234556666666444 45556677777776543111
Q ss_pred hHHHHHHhhhHhhhhhhcHHHHHHHHHHH
Q 014143 220 IMGIIRECGGKMHMAERQWADAATDFFEA 248 (430)
Q Consensus 220 ~~~~~~~~~g~~~~~~~~y~~A~~~f~ea 248 (430)
...++.....+....+|...|...|-.+
T Consensus 69 -~~~~~~~Y~~~l~~~~d~~~aR~lfer~ 96 (280)
T PF05843_consen 69 -DPDFWLEYLDFLIKLNDINNARALFERA 96 (280)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 1123333333344455555555555544
No 381
>PF03081 Exo70: Exo70 exocyst complex subunit; InterPro: IPR004140 The Exo70 protein forms one subunit of the exocyst complex. First discovered in Saccharomyces cerevisiae [], Exo70 and other exocyst proteins have been observed in several other eukaryotes, including humans. In S. cerevisiae, the exocyst complex is involved in the late stages of exocytosis, and is localized at the tip of the bud, the major site of exocytosis in yeast []. Exo70 interacts with the Rho3 GTPase []. This interaction mediates one of the three known functions of Rho3 in cell polarity: vesicle docking and fusion with the plasma membrane (the other two functions are regulation of actin polarity and transport of exocytic vesicles from the mother cell to the bud) []. In humans, the functions of Exo70 and the exocyst complex are less well characterised: Exo70 is expressed in several tissues and is thought to also be involved in exocytosis [].; GO: 0006887 exocytosis, 0000145 exocyst; PDB: 2PFV_A 2B7M_B 2B1E_A 2PFT_A.
Probab=36.80 E-value=86 Score=31.04 Aligned_cols=81 Identities=19% Similarity=0.288 Sum_probs=50.2
Q ss_pred chHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHH
Q 014143 294 EILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 373 (430)
Q Consensus 294 ~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE 373 (430)
+-..+++..+.|++ .|+++...+..----||.|.+.+..=......-.+.++.+-|..+.+ +-.+-+..+++++|
T Consensus 291 ~~~~~ke~f~~Fn~----~fee~~~~q~~~~vpD~~LR~~Lr~~i~~~v~p~Y~~F~~~~~~~~~-~~~Kyikyt~~~le 365 (371)
T PF03081_consen 291 ERELLKEKFKKFNS----AFEEIYKAQKTWKVPDPELREELRREIKEKVVPAYRRFYERYRNSQF-NPEKYIKYTPEDLE 365 (371)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHTT---S-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCSS-SHCCC-SS-HHHHH
T ss_pred cHHHHHHHHHHHHH----HHHHHHHcCcceecCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCCCCCccCHHHHH
Confidence 34556777776664 36666665543333688887554444444444555666677888888 66777899999999
Q ss_pred HHHHHh
Q 014143 374 QLLVSL 379 (430)
Q Consensus 374 ~~l~~l 379 (430)
..|.+|
T Consensus 366 ~~l~~L 371 (371)
T PF03081_consen 366 NMLNEL 371 (371)
T ss_dssp HHHHTC
T ss_pred HHHHcC
Confidence 998764
No 382
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=36.74 E-value=82 Score=28.92 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=37.8
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEe
Q 014143 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (430)
Q Consensus 346 l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~ 388 (430)
|+.+.+--..+|...||+.||++..-|-..+-.+..+|.+...
T Consensus 16 il~lL~~~g~~sa~elA~~Lgis~~avR~HL~~Le~~Glv~~~ 58 (218)
T COG2345 16 ILELLKKSGPVSADELAEELGISPMAVRRHLDDLEAEGLVEVE 58 (218)
T ss_pred HHHHHhccCCccHHHHHHHhCCCHHHHHHHHHHHHhCcceeee
Confidence 4455555688999999999999999999999999999999776
No 383
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=36.20 E-value=12 Score=39.44 Aligned_cols=99 Identities=10% Similarity=0.028 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
.+.-++.+.+.|++..|..++.++....-. + ....+..+..+++....++...|...+.... .....+
T Consensus 27 ~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~-----~----~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~---~~~l~~ 94 (536)
T PF04348_consen 27 LLLAARALLQEGDWAQAQALLNQLDPQQLS-----P----SQQARYQLLRARLALAQGDPEQALSLLNAQD---LWQLPP 94 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhcccccCC-----h----HHHHHHHHHHHHHHHhcCCHHHHHHHhccCC---cccCCH
Confidence 347788999999999999999999844211 1 3456788899999999999999988876421 111233
Q ss_pred hhHHHHHHhhhHhhhhhhcHHHHHHHHHHHH
Q 014143 219 RIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (430)
Q Consensus 219 ~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (430)
..+..++...+.++...+++.+|.+.....-
T Consensus 95 ~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~ 125 (536)
T PF04348_consen 95 EQQARYHQLRAQAYEQQGDPLAAARERIALD 125 (536)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 4455666777788888889988888877653
No 384
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=35.85 E-value=1.6e+02 Score=28.42 Aligned_cols=67 Identities=10% Similarity=0.029 Sum_probs=44.5
Q ss_pred HhhhhhhHH-----HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHH
Q 014143 128 EAKNERLWF-----KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLK 202 (430)
Q Consensus 128 ~~~~~kl~~-----r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~ 202 (430)
|+.++|-++ ++--+-+..|.+.|.+.+|..+.+.+...-. +.-+.....++++...||-..|.
T Consensus 266 Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldp------------L~e~~nk~lm~~la~~gD~is~~ 333 (361)
T COG3947 266 WAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDP------------LSEQDNKGLMASLATLGDEISAI 333 (361)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCh------------hhhHHHHHHHHHHHHhccchhhh
Confidence 454555555 3334677889999999999999999887721 22234455567778888855555
Q ss_pred HHHH
Q 014143 203 QLYQ 206 (430)
Q Consensus 203 ~~l~ 206 (430)
.-|.
T Consensus 334 khye 337 (361)
T COG3947 334 KHYE 337 (361)
T ss_pred hHHH
Confidence 5444
No 385
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=35.85 E-value=2.2e+02 Score=22.57 Aligned_cols=43 Identities=9% Similarity=0.139 Sum_probs=37.8
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEE
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLL 396 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v 396 (430)
..++..+||+.++++..-+-..|.+|...|-|.=.-|..++..
T Consensus 42 ~~~t~~eL~~~l~~~~stvs~~i~~Le~kg~I~r~~~~~D~R~ 84 (109)
T TIGR01889 42 GKLTLKEIIKEILIKQSALVKIIKKLSKKGYLSKERSEDDERK 84 (109)
T ss_pred CcCcHHHHHHHHCCCHHHHHHHHHHHHHCCCEeccCCcccCCe
Confidence 5799999999999999999999999999999986666666533
No 386
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=35.80 E-value=2e+02 Score=27.54 Aligned_cols=52 Identities=13% Similarity=0.301 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
.++.+.++..+++.++.+|-+ .+.+.++...|.+.|+...++..|.++.+.+
T Consensus 166 ~~~~~~~~~~l~~Li~~dp~~----E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 166 CGRADAVIEHLERLIELDPYD----EPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred cccHHHHHHHHHHHHhcCccc----hHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 446788999999998887733 5777899999999999999999999887753
No 387
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=35.33 E-value=1.4e+02 Score=31.41 Aligned_cols=60 Identities=18% Similarity=0.087 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 184 ~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
.|...+-.+...|++.+|...+++|.... |. ...+.+.|.++...|++.+|...|..++.
T Consensus 422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~-----ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 422 IYEILAVQALVKGKTDEAYQAINKAIDLE-----MS--WLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444445666789999999999887553 32 23456678888899999999999988864
No 388
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=35.17 E-value=61 Score=23.15 Aligned_cols=24 Identities=8% Similarity=0.394 Sum_probs=17.8
Q ss_pred hCCChHHHHHHHHHhhhcCceeEe
Q 014143 365 LNVPEKDVEQLLVSLILDNRIDGH 388 (430)
Q Consensus 365 l~l~~~evE~~l~~lI~~g~i~g~ 388 (430)
.+.+.++++..+.+++.+|++...
T Consensus 31 ~~~s~~eL~~fL~~lv~e~~L~~~ 54 (60)
T PF08672_consen 31 YDISLEELQEFLDRLVEEGKLECS 54 (60)
T ss_dssp TT--HHHHHHHHHHHHHTTSEE--
T ss_pred CCCCHHHHHHHHHHHHHCCcEEec
Confidence 456778999999999999998653
No 389
>KOG2235 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.08 E-value=1.5e+02 Score=31.41 Aligned_cols=61 Identities=16% Similarity=0.457 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 332 NYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 332 ~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
.+|+.+.+.|.++ ..--..|+++++|..+++|.+.+...|..-....-|+|++|- |++...
T Consensus 115 ~Y~d~iaeEinek-----LqE~gqvtiaeLakq~dl~sellqs~l~ek~lg~iikgr~dg--gviyT~ 175 (776)
T KOG2235|consen 115 EYVDRIAEEINEK-----LQEQGQVTIAELAKQWDLPSELLQSLLIEKLLGSIIKGRVDG--GVIYTS 175 (776)
T ss_pred HHHHHHHHHHHHH-----HHHhcchHHHHHHHhcCCcHHHHHHHHHHHhhccceeeeecC--CEEeeH
Confidence 4566666655433 222378999999999999999999988887777778999987 665543
No 390
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=34.79 E-value=1.6e+02 Score=28.83 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=21.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 59 QTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 59 ~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
++++.|..+|.|++++++........
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~~L~ 136 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVRRLQ 136 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHHHHH
Confidence 45789999999999999888776654
No 391
>PF13542 HTH_Tnp_ISL3: Helix-turn-helix domain of transposase family ISL3
Probab=34.73 E-value=1e+02 Score=20.65 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=20.9
Q ss_pred cchhhHHhHhCCChHHHHHHHHHh
Q 014143 356 IRIPFISKELNVPEKDVEQLLVSL 379 (430)
Q Consensus 356 I~l~~lA~~l~l~~~evE~~l~~l 379 (430)
.++..+|+.+|++.+-|...+-+.
T Consensus 28 ~s~~~vA~~~~vs~~TV~ri~~~~ 51 (52)
T PF13542_consen 28 RSFKDVARELGVSWSTVRRIFDRY 51 (52)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHhh
Confidence 799999999999999998876543
No 392
>PRK15331 chaperone protein SicA; Provisional
Probab=34.60 E-value=98 Score=27.09 Aligned_cols=50 Identities=10% Similarity=0.038 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLT 82 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~ 82 (430)
++++++|...|+-+.-.++ |..+-..-++-+|-..|+|+++++.|.....
T Consensus 50 ~Gk~~eA~~~F~~L~~~d~----~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~ 99 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYDF----YNPDYTMGLAAVCQLKKQFQKACDLYAVAFT 99 (165)
T ss_pred CCCHHHHHHHHHHHHHhCc----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999988876654 2345556677777778888888887765544
No 393
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=34.55 E-value=4e+02 Score=25.14 Aligned_cols=111 Identities=8% Similarity=0.063 Sum_probs=63.9
Q ss_pred HHhHHHHHHHHHhc-cHHHHHHHHHHHHhhccCCCCC--cchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 014143 137 KTNLKLCKIWFDMG-EYGRMSKILKELHKSCQREDGT--DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (430)
Q Consensus 137 r~~~~La~~~~~~g-~~~~A~~~l~el~~~~~~~~~~--~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~ 213 (430)
++.+..|.-.++.+ ++++|..+|++....+..+... ....-....+.++...++.++..++......+.+..+-..+
T Consensus 36 ~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~ 115 (278)
T PF08631_consen 36 RVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLES 115 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 66778888888888 9999999999998886441110 00001245567777778888888775433333332233334
Q ss_pred cCCC-chhH-HHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 214 AIPH-PRIM-GIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 214 ~~~~-~~~~-~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
..++ |.+. -.++.+.+ ..++..+...+.....+.
T Consensus 116 e~~~~~~~~~L~l~il~~-----~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 116 EYGNKPEVFLLKLEILLK-----SFDEEEYEEILMRMIRSV 151 (278)
T ss_pred hCCCCcHHHHHHHHHHhc-----cCChhHHHHHHHHHHHhc
Confidence 4554 3332 23333333 445555555555554443
No 394
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=34.43 E-value=83 Score=24.64 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=30.1
Q ss_pred HHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcee
Q 014143 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 347 ~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
++.+.-+..=.-..||..+++|.++|+..+-+|...|.|.
T Consensus 13 L~hl~~~~~Dy~k~ia~~l~~~~~~v~~~l~~Le~~GLle 52 (92)
T PF10007_consen 13 LQHLKKAGPDYAKSIARRLKIPLEEVREALEKLEEMGLLE 52 (92)
T ss_pred HHHHHHHCCCcHHHHHHHHCCCHHHHHHHHHHHHHCCCeE
Confidence 3333333333456689999999999999999999998873
No 395
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=33.68 E-value=2.7e+02 Score=22.82 Aligned_cols=70 Identities=9% Similarity=0.021 Sum_probs=47.8
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCCccchHHHH-H-HHHHHHHHHHHHHHh
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTA-I-DKWNSQLRSLYQTVS 426 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~-l-~~w~~~v~~l~~~v~ 426 (430)
..+..+||+.+|++..-|-..|..|-..|.|..+-+-..-...+. +... ..... + ..|......+-..++
T Consensus 30 ~~~v~ela~~l~lsqstvS~HL~~L~~AGLV~~~r~Gr~~~Y~l~-~~~~-~~~~~~~~~~w~~~~~~l~~~l~ 101 (117)
T PRK10141 30 ELCVCDLCTALDQSQPKISRHLALLRESGLLLDRKQGKWVHYRLS-PHIP-AWAAKIIEQAWLCEQEDVQAIVR 101 (117)
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEEcCEEEEEEC-chHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 588899999999999999999999999999988766443333332 2111 11111 1 147777777666554
No 396
>PRK11050 manganese transport regulator MntR; Provisional
Probab=32.74 E-value=2.4e+02 Score=24.06 Aligned_cols=45 Identities=20% Similarity=0.125 Sum_probs=36.3
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
..++...||+.++++..-|-..+.+|...|.|.-+. .+.+.+++.
T Consensus 50 ~~~t~~eLA~~l~is~stVsr~l~~Le~~GlI~r~~---~~~v~LT~~ 94 (152)
T PRK11050 50 GEARQVDIAARLGVSQPTVAKMLKRLARDGLVEMRP---YRGVFLTPE 94 (152)
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec---CCceEECch
Confidence 568999999999999999999999999999876432 344566654
No 397
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=32.52 E-value=44 Score=25.97 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.5
Q ss_pred cccchhhHHhHhCCChHHHHHHHH
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLV 377 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~ 377 (430)
+.++.+.+|..||++++++|..+.
T Consensus 22 ~~ls~~~ia~dL~~s~~~le~vL~ 45 (89)
T PF10078_consen 22 SGLSLEQIAADLGTSPEHLEQVLN 45 (89)
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 789999999999999999997763
No 398
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=32.05 E-value=7.7e+02 Score=27.68 Aligned_cols=31 Identities=10% Similarity=0.147 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
.-++.+|++.|-..|+..+++..|+.-..+.
T Consensus 967 ~AAcYhlaR~YEn~g~v~~Av~FfTrAqafs 997 (1416)
T KOG3617|consen 967 KAACYHLARMYENDGDVVKAVKFFTRAQAFS 997 (1416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3478899999999999999999888776653
No 399
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=31.97 E-value=97 Score=28.17 Aligned_cols=62 Identities=8% Similarity=0.159 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEE
Q 014143 335 EDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (430)
Q Consensus 335 ~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (430)
+.+++.|++.-+..-..|=.+++-..||+.+|+|-.-|-.-|..|..+|.+.- -+..|+.+.
T Consensus 10 ~~vy~~i~~~I~~g~l~pG~~L~e~eLae~lgVSRtpVREAL~~L~~eGlv~~--~~~~G~~V~ 71 (224)
T PRK11534 10 LDGYRWLKNDIIRGNFQPDEKLRMSLLTSRYALGVGPLREALSQLVAERLVTV--VNQKGYRVA 71 (224)
T ss_pred HHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEE--eCCCceEeC
Confidence 45677777666666678888999999999999999999999999999999964 344454443
No 400
>PF00440 TetR_N: Bacterial regulatory proteins, tetR family; InterPro: IPR001647 This entry represents a DNA-binding domain with a helix-turn-helix (HTH) structure that is found in several bacterial and archaeal transcriptional regulators, such as TetR, the tetracycline resistance repressor. Numerous other transcriptional regulatory proteins also contain HTH-type DNA-binding domains, and can be grouped into subfamiles based on sequence similarity. The domain represented by this entry is found in a subfamily of proteins that includes the transcriptional regulators TetR, TetC, AcrR, BetI, Bm3R1, EnvR, QacR, MtrR, TcmR, Ttk, YbiH, and YhgD [, , ]. Many of these proteins function as repressors that control the level of susceptibility to hydrophobic antibiotics and detergents. They all have similar molecular weights, ranging from 21 to 25 kDa. The helix-turn-helix motif is located in the initial third of the protein. The 3D structure of the homodimeric TetR protein complexed with 7-chloro-tetracycline-magnesium has been determined to 2.1 A resolution []. TetR folds into ten alpha-helices with connecting turns and loops. The three N-terminal alpha-helices of the repressor form the DNA-binding domain: this structural motif encompasses an HTH fold with an inverse orientation compared with that of other DNA-binding proteins.; GO: 0003677 DNA binding; PDB: 3NPI_B 3IUV_A 3CCY_A 2JK3_A 2FX0_A 2JJ7_A 2WV1_B 3BTI_D 3BR6_E 3BR5_A ....
Probab=31.95 E-value=67 Score=21.20 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.6
Q ss_pred ccccccchhhHHhHhCCChHHH
Q 014143 351 KPYTRIRIPFISKELNVPEKDV 372 (430)
Q Consensus 351 ~~Y~~I~l~~lA~~l~l~~~ev 372 (430)
+.|..+|+..||+..|++..-+
T Consensus 12 ~G~~~~s~~~Ia~~~gvs~~~~ 33 (47)
T PF00440_consen 12 KGYEAVSIRDIARRAGVSKGSF 33 (47)
T ss_dssp HHTTTSSHHHHHHHHTSCHHHH
T ss_pred hCHHhCCHHHHHHHHccchhhH
Confidence 5799999999999999998654
No 401
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=31.91 E-value=1.1e+02 Score=27.08 Aligned_cols=43 Identities=9% Similarity=-0.005 Sum_probs=36.0
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
.++-.+||..+|++.+-|-..+.+|-.+|.|. ...|.|.+.+.
T Consensus 149 ~~t~~~iA~~lG~tretvsR~l~~l~~~g~I~----~~~~~i~I~d~ 191 (202)
T PRK13918 149 YATHDELAAAVGSVRETVTKVIGELSREGYIR----SGYGKIQLLDL 191 (202)
T ss_pred cCCHHHHHHHhCccHHHHHHHHHHHHHCCCEE----cCCCEEEEECH
Confidence 56789999999999999999999999887774 45567787765
No 402
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=31.87 E-value=1.7e+02 Score=24.85 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014143 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (430)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (430)
|..+-|..|.++++.++ .+..-.++..|+--|++.|+|+..+.++.-|+..
T Consensus 50 dv~~GI~iLe~l~~~~~--~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAH--PERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHhHHHHHHHhhhcC--cccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 46789999999987332 2223567888999999999999999999999874
No 403
>PF14493 HTH_40: Helix-turn-helix domain
Probab=31.81 E-value=54 Score=25.34 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=30.2
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCc-ee
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNR-ID 386 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~-i~ 386 (430)
.-.+++.||+.-++++.-|+..|++++..|. ++
T Consensus 12 ~G~si~eIA~~R~L~~sTI~~HL~~~~~~g~~~~ 45 (91)
T PF14493_consen 12 KGLSIEEIAKIRGLKESTIYGHLAELIESGEPLD 45 (91)
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHHHhCCCCC
Confidence 4689999999999999999999999999998 44
No 404
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=31.43 E-value=1.6e+02 Score=29.82 Aligned_cols=72 Identities=10% Similarity=0.063 Sum_probs=49.2
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCCccc--hHHHHH---------HHHHHHHHHHH
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGM--KKYTAI---------DKWNSQLRSLY 422 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~--~~~~~l---------~~w~~~v~~l~ 422 (430)
..++.++|++.+++|.+.++..+.+|...|.+. +-+ ..+.+-..++++.+ +.++.+ ..|..+++.++
T Consensus 309 ~~~t~~~La~~l~~~~~~v~~iL~~L~~agLI~-~~~-~g~~~l~rd~~~itL~dv~~~~~~~~~~~~~~~~~~~~~~~l 386 (412)
T PRK04214 309 KALDVDEIRRLEPMGYDELGELLCELARIGLLR-RGE-RGQWVLARDLDSVPLAELYELFVLRPLPCRDDHVGQAADAAL 386 (412)
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCeE-ecC-CCceEecCCHHhCcHHHHHHhCCCCcCCCccchHHHHHHHHH
Confidence 578999999999999999999999999999996 322 23454444433221 112211 25778888777
Q ss_pred HHHhh
Q 014143 423 QTVSN 427 (430)
Q Consensus 423 ~~v~~ 427 (430)
..+.+
T Consensus 387 ~~~~~ 391 (412)
T PRK04214 387 TQLRQ 391 (412)
T ss_pred HHHHH
Confidence 76654
No 405
>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.
Probab=31.12 E-value=2e+02 Score=23.15 Aligned_cols=48 Identities=13% Similarity=0.069 Sum_probs=39.9
Q ss_pred cccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEE
Q 014143 350 IKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLE 397 (430)
Q Consensus 350 ~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~ 397 (430)
+.-|+-||...||+.++++..-+...|-.|...|.|.-..-.....|+
T Consensus 54 V~~~K~ITp~~lserlkI~~SlAr~~Lr~L~~kG~Ik~V~k~~~~~IY 101 (105)
T PF03297_consen 54 VPKMKLITPSVLSERLKINGSLARKALRELESKGLIKPVSKHHRQRIY 101 (105)
T ss_dssp CTTSSCECHHHHHHHHCCSCHHHHHHHHHHHHCCSSEEEECCTTCEEE
T ss_pred hccCcEeeHHHHHHhHhhHHHHHHHHHHHHHHCCCEEEEeccCCeEEE
Confidence 345899999999999999999999999999999999876444444444
No 406
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=30.89 E-value=2.8e+02 Score=24.18 Aligned_cols=63 Identities=13% Similarity=0.176 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHH
Q 014143 181 LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (430)
Q Consensus 181 ~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (430)
.+.-++....+.+..++...+..++...+-. .|. ...+..+.|.+|+..|+|.+|.+.|.+.-
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvL-----RP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVL-----RPE-FPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHh-----CCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4455555566777888899988888766533 333 24577888999999999999999999973
No 407
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=30.73 E-value=51 Score=30.05 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=23.5
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhh
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLI 380 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI 380 (430)
+++++.+||+.||++..-+...|.++.
T Consensus 177 R~~~l~dLA~~lGISkst~~ehLRrAe 203 (215)
T COG3413 177 RRVSLKDLAKELGISKSTLSEHLRRAE 203 (215)
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 899999999999999987777776654
No 408
>PRK04239 hypothetical protein; Provisional
Probab=30.43 E-value=39 Score=27.42 Aligned_cols=52 Identities=29% Similarity=0.385 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeec
Q 014143 340 NVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391 (430)
Q Consensus 340 ~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq 391 (430)
..+...|.++..|--+=.|++|+-.=-=-...||..|.+|...|.|.++||.
T Consensus 37 ~qk~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~liqlAq~G~i~~ki~e 88 (110)
T PRK04239 37 AQKQAILRQILTPEARERLNRIKLVKPEFAEQVEQQLIQLAQSGRIQGPIDD 88 (110)
T ss_pred HHHHHHHHHHCCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 3455567778777544334433320000124899999999999999999874
No 409
>COG4367 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.12 E-value=52 Score=25.35 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.9
Q ss_pred ccccchhhHHhHhCCChHHHHHHH
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLL 376 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l 376 (430)
-+++|.+.||..|++++..+|+.+
T Consensus 21 l~~LS~~~iA~~Ln~t~~~lekil 44 (97)
T COG4367 21 LCPLSDEEIATALNWTEVKLEKIL 44 (97)
T ss_pred hccccHHHHHHHhCCCHHHHHHHH
Confidence 378999999999999999999877
No 410
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=30.00 E-value=5.9e+02 Score=25.70 Aligned_cols=180 Identities=17% Similarity=0.163 Sum_probs=99.0
Q ss_pred hhHHHHHHhhcccCCC-CHHHHHHHHHHhhcCCccchhhhHHHH-HHHHHHHHHhCCHHHHHH-HHHHHHHHH-------
Q 014143 15 VSRVLCSILEKGLVET-DPEGALAGFAEVVAMEPEKAEWGFKAL-KQTVKLYYRLGKYKEMMD-AYREMLTYI------- 84 (430)
Q Consensus 15 ~~~~~~~~~ak~~~~~-~~~~Ai~~~~~ii~~~~~~~~~~~k~l-~~l~~l~~~~~~~~~l~e-~~~~l~~~~------- 84 (430)
.+-..+....|..+.+ |.....+.+..+++.=-+..+| ..| +++..+..+.|+...++. .+++..++.
T Consensus 30 ~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w--~~Lne~i~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~ 107 (439)
T KOG1498|consen 30 AAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDW--DLLNEQIRLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLE 107 (439)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCCch
Confidence 3333444444444443 5666667777776543334455 333 345555566666665553 344444443
Q ss_pred -------------hhh----hhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHH--HH
Q 014143 85 -------------KSA----VTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLC--KI 145 (430)
Q Consensus 85 -------------~~~----~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La--~~ 145 (430)
++. +-+++.++++..+-+.-.+..+ ...-+.+.--|+.-. -...-++...|- .+
T Consensus 108 ~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~----Aa~il~el~VETygs---m~~~ekV~fiLEQmrK 180 (439)
T KOG1498|consen 108 TKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAE----AADILCELQVETYGS---MEKSEKVAFILEQMRL 180 (439)
T ss_pred hHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHH----HHHHHHhcchhhhhh---hHHHHHHHHHHHHHHH
Confidence 221 1355556665555554333111 111112221111100 001113333332 33
Q ss_pred HHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 014143 146 WFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (430)
Q Consensus 146 ~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a 208 (430)
-+..+||-.|.-+-.++.+.+++.+.. ..+++.+|=..+++++..+.|-.+-.+|+..
T Consensus 181 OG~~~D~vra~i~skKI~~K~F~~~~~-----~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yrai 238 (439)
T KOG1498|consen 181 CLLRLDYVRAQIISKKINKKFFEKPDV-----QELKLKYYELMIRLGLHDRAYLNVCRSYRAI 238 (439)
T ss_pred HHHhhhHHHHHHHHHHhhHHhcCCccH-----HHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 456789999999999999988875432 3788999999999999999888877787765
No 411
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=29.71 E-value=91 Score=23.54 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=24.3
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHhh
Q 014143 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLI 380 (430)
Q Consensus 346 l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI 380 (430)
|++.+.-=.-|+.+.||..+|.|.++|...+..+=
T Consensus 29 LLr~LA~G~PVt~~~LA~a~g~~~e~v~~~L~~~p 63 (77)
T PF12324_consen 29 LLRLLAKGQPVTVEQLAAALGWPVEEVRAALAAMP 63 (77)
T ss_dssp HHHHHTTTS-B-HHHHHHHHT--HHHHHHHHHH-T
T ss_pred HHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHhCC
Confidence 34444445789999999999999999999998874
No 412
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=29.28 E-value=2.7e+02 Score=24.22 Aligned_cols=56 Identities=9% Similarity=0.096 Sum_probs=45.0
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 014143 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (430)
Q Consensus 141 ~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a 208 (430)
.+...-...++.+++..+|..+++.-. ...++-+....++...|++..|..+++..
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrvLRP------------~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRVLRP------------EFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHHhCC------------CchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444555566799999999999999932 34577778889999999999999998875
No 413
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=29.10 E-value=1.7e+02 Score=26.11 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 335 EDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 335 ~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
+.+++.|++.-+..-+.|=.+|+-..||+.||+|..-|-.-|..|-.+|.+.- -+..|+++..
T Consensus 14 ~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVReAL~~L~~eGlv~~--~~~~G~~V~~ 76 (212)
T TIGR03338 14 TLVQDEIERAILSGELPPGAKLNESDIAARLGVSRGPVREAFRALEEAGLVRN--EKNRGVFVRE 76 (212)
T ss_pred HHHHHHHHHHHHcCCCCCCCEecHHHHHHHhCCChHHHHHHHHHHHHCCCEEE--ecCCCeEEec
Confidence 45666666666666678888999999999999999999999999999999863 3445666654
No 414
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=29.05 E-value=2.1e+02 Score=31.12 Aligned_cols=104 Identities=14% Similarity=0.171 Sum_probs=61.2
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhh-----ccCCCCCcchhhcchHHHHH-HHH------HHHHHhhcCHHHHHHH
Q 014143 137 KTNLKLCKIWFDMGEYGRMSKILKELHKS-----CQREDGTDDQKKGSQLLEVY-AIE------IQMYTETKNNKKLKQL 204 (430)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~~l~el~~~-----~~~~~~~~d~~~~~~~~e~~-l~~------~~l~~~~~d~~ka~~~ 204 (430)
.+...+|.++...|-..+|..+...+.-. |+...|..+ +.+.+ ..+ .++|..+||+..=-.+
T Consensus 399 q~q~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~------kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHG------KAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccc------hHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 44557888899999888888888777654 332222111 11111 111 2366677776655566
Q ss_pred HHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 205 YQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 205 l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
|++|-.+.+. ++++-+.+-|..+...++|.++.++|-.+++-
T Consensus 473 yEkawElsn~-----~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~ 514 (777)
T KOG1128|consen 473 YEKAWELSNY-----ISARAQRSLALLILSNKDFSEADKHLERSLEI 514 (777)
T ss_pred HHHHHHHhhh-----hhHHHHHhhccccccchhHHHHHHHHHHHhhc
Confidence 6666443332 23333334455555678888888888888764
No 415
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=28.88 E-value=86 Score=23.07 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=23.1
Q ss_pred HHhcccc-cccchhhHHhHhCCChHHHHHHHHHh
Q 014143 347 LKLIKPY-TRIRIPFISKELNVPEKDVEQLLVSL 379 (430)
Q Consensus 347 ~~i~~~Y-~~I~l~~lA~~l~l~~~evE~~l~~l 379 (430)
.++..-+ +.-+...||+.+|+++++|...+...
T Consensus 11 ~~L~~~lgr~Pt~eEiA~~lgis~~~v~~~l~~~ 44 (78)
T PF04539_consen 11 RELEQELGREPTDEEIAEELGISVEEVRELLQAS 44 (78)
T ss_dssp HHHHHHHSS--BHHHHHHHHTS-HHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHcccHHHHHHHHHhC
Confidence 4444333 67799999999999999999887653
No 416
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=28.82 E-value=1.8e+02 Score=22.78 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=34.1
Q ss_pred hhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC
Q 014143 359 PFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (430)
Q Consensus 359 ~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g 394 (430)
..||+.++++..-+-..+-+|...|.|.=..|..++
T Consensus 40 ~~la~~l~i~~~~vt~~l~~Le~~glv~r~~~~~Dr 75 (126)
T COG1846 40 KELAERLGLDRSTVTRLLKRLEDKGLIERLRDPEDR 75 (126)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccc
Confidence 999999999999999999999999999988888886
No 417
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=28.63 E-value=5.5e+02 Score=24.89 Aligned_cols=127 Identities=15% Similarity=0.190 Sum_probs=85.3
Q ss_pred HHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCCh
Q 014143 33 EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNF 112 (430)
Q Consensus 33 ~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~ 112 (430)
+..+..|++.++.+++. .+.+....+++.+..+.+++.+..+.++... +. +..--.+-+.-....+.. -+.
T Consensus 48 E~klsilerAL~~np~~----~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~-~~~LW~~yL~~~q~~~~~---f~v 118 (321)
T PF08424_consen 48 ERKLSILERALKHNPDS----ERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PG-SPELWREYLDFRQSNFAS---FTV 118 (321)
T ss_pred HHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CC-ChHHHHHHHHHHHHHhcc---CcH
Confidence 45566677766665532 4666667777777788888888888888775 43 333333333333333322 235
Q ss_pred hHHHHHHHHHHHHHHHhhh------------hhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccC
Q 014143 113 SLLREFYQTTLKALEEAKN------------ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (430)
Q Consensus 113 ~~~~~~~~~~~e~l~~~~~------------~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~ 168 (430)
+.+...|..++..+..... +...+.+-++++.+..+.|-.+.|..++|-+-....-
T Consensus 119 ~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 119 SDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 5677888888887776433 2345577889999999999999999999988877543
No 418
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=28.53 E-value=2.3e+02 Score=23.08 Aligned_cols=47 Identities=13% Similarity=0.093 Sum_probs=37.2
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEe--eeccC-CEEEEcc
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH--IDQVN-RLLERGD 400 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~--IDq~~-g~v~~~~ 400 (430)
..+++++||+.+.-|.--+-.+|-+|...|-|.=. .-+++ ..+++..
T Consensus 18 ~~vtl~elA~~l~cS~Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~ 67 (115)
T PF12793_consen 18 VEVTLDELAELLFCSRRNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLK 67 (115)
T ss_pred cceeHHHHHHHhCCCHHHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEee
Confidence 58999999999999999999999999999999533 33333 2455543
No 419
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=28.49 E-value=92 Score=20.33 Aligned_cols=37 Identities=8% Similarity=-0.139 Sum_probs=25.6
Q ss_pred chhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEE
Q 014143 357 RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (430)
Q Consensus 357 ~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (430)
++.++|+.+|+++.-+..+ +..|.+.+.-+.. |.-.+
T Consensus 2 ~~~e~a~~~gv~~~tlr~~----~~~g~l~~~~~~~-~~~~y 38 (49)
T cd04761 2 TIGELAKLTGVSPSTLRYY----ERIGLLSPARTEG-GYRLY 38 (49)
T ss_pred cHHHHHHHHCcCHHHHHHH----HHCCCCCCCcCCC-CCEEe
Confidence 6789999999999988877 5567766433322 44444
No 420
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.40 E-value=9.7e+02 Score=27.68 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=21.3
Q ss_pred HHhhcccCCCC-HHHHHHHHHHhhcCCc
Q 014143 21 SILEKGLVETD-PEGALAGFAEVVAMEP 47 (430)
Q Consensus 21 ~~~ak~~~~~~-~~~Ai~~~~~ii~~~~ 47 (430)
..+-|+++..| |.+-|+++++|+-..+
T Consensus 988 S~tVkAfMtadLp~eLIELLEKIvL~~S 1015 (1666)
T KOG0985|consen 988 SVTVKAFMTADLPNELIELLEKIVLDNS 1015 (1666)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhcCCc
Confidence 44567788887 8999999999986654
No 421
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.33 E-value=1.3e+02 Score=33.34 Aligned_cols=56 Identities=13% Similarity=0.288 Sum_probs=42.8
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhh
Q 014143 190 QMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (430)
Q Consensus 190 ~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (430)
++|+..|+|.+|.++-+ ..|+....+....+..++.+++|..|++.+-+..+.|.+
T Consensus 366 k~yLd~g~y~kAL~~ar---------~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEE 421 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIAR---------TRPDALETVLLKQADFLFQDKEYLRAAEIYAETLSSFEE 421 (911)
T ss_pred HHHHhcchHHHHHHhcc---------CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHH
Confidence 46788899999877521 135656666677788999999999999999988776654
No 422
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=28.19 E-value=1.6e+02 Score=22.75 Aligned_cols=48 Identities=25% Similarity=0.336 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHH
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYR 78 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~ 78 (430)
.+++++|++.|..++..+++... -.+-+.++.++.-.|.-+-+...|.
T Consensus 35 ~g~~e~Al~~Ll~~v~~dr~~~~--~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 35 AGDYEEALDQLLELVRRDRDYED--DAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp TT-HHHHHHHHHHHHCC-TTCCC--CHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCccccc--cHHHHHHHHHHHHcCCCChHHHHHH
Confidence 56799999999999998764211 3455667777777777665555443
No 423
>PF01984 dsDNA_bind: Double-stranded DNA-binding domain; InterPro: IPR002836 This protein family is found in archaea and eukaryota. The human TFAR19 (TF-1 cell apoptosis-related protein 19) encodes a protein which shares significant homology to the corresponding proteins of species ranging from yeast to mice. TFAR19 exhibits a ubiquitous expression pattern and its expression is up-regulated in the tumour cells undergoing apoptosis. TFAR19 may play a general role in the apoptotic process []. Also included in this family is a DNA-binding protein from the archaea, Methanobacterium thermoautotrophicum.; GO: 0003677 DNA binding; PDB: 1EIJ_A 2K6B_A 2CRU_A 1YYB_A 2JXN_A 2FH0_A.
Probab=28.15 E-value=42 Score=27.11 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhhcCceeEeeec
Q 014143 370 KDVEQLLVSLILDNRIDGHIDQ 391 (430)
Q Consensus 370 ~evE~~l~~lI~~g~i~g~IDq 391 (430)
..||..|.+|...|.|.++||.
T Consensus 62 ~~VE~~Liqlaq~G~l~~kI~d 83 (107)
T PF01984_consen 62 RQVENQLIQLAQSGQLRGKIDD 83 (107)
T ss_dssp HHHHHHHHHHHHCTSSSS-B-H
T ss_pred HHHHHHHHHHHHcCCCCCCcCH
Confidence 4899999999999999999874
No 424
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=28.14 E-value=3.7e+02 Score=28.21 Aligned_cols=95 Identities=16% Similarity=0.072 Sum_probs=68.0
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchh
Q 014143 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (430)
Q Consensus 141 ~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~ 220 (430)
.-++...++|+...|..++.++-..++ | ....+.-++.+++..+.+++..|...+.+... ... |..
T Consensus 68 lAa~al~~e~k~~qA~~Ll~ql~~~Lt------d----~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~---~~l-s~~ 133 (604)
T COG3107 68 LAARALVEEGKTAQAQALLNQLPQELT------D----AQRAEKSLLAAELALAQKQPAAALQQLAKLLP---ADL-SQN 133 (604)
T ss_pred HHHHHHHHcCChHHHHHHHHhccccCC------H----HHHHHHHHHHHHHHHhccChHHHHHHHhhcch---hhc-CHH
Confidence 456678899999999999999987543 3 45788888999999999999999998765421 111 333
Q ss_pred -HHHHHHhhhHhhhhhhcHHHHHHHHHHHH
Q 014143 221 -MGIIRECGGKMHMAERQWADAATDFFEAF 249 (430)
Q Consensus 221 -~~~~~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (430)
+.+++...+...-..++--+|.+.+....
T Consensus 134 Qq~Ry~q~~a~a~ea~~~~~~a~rari~~~ 163 (604)
T COG3107 134 QQARYYQARADALEARGDSIDAARARIAQD 163 (604)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 45666655555555666666776666553
No 425
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=28.11 E-value=6.2e+02 Score=25.30 Aligned_cols=74 Identities=18% Similarity=0.158 Sum_probs=53.8
Q ss_pred ecccchhhHHHHHHhhcccCCC-CHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHHH
Q 014143 9 FSDEFTVSRVLCSILEKGLVET-DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLY--YRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 9 ~~~~~~~~~~~~~~~ak~~~~~-~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~--~~~~~~~~l~e~~~~l~~~~ 84 (430)
..|..++-+.+..-.|+.+.+. ++.+|.+.|..+...-++... ++.+..++..| ++.-++.++.+.+..+.+..
T Consensus 123 ~~~p~~~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 123 LENPYEVFGDREWRRAKELFNRYDYGAAARILEELLRRLPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 3455566666777777776655 799999999999875222222 67788887654 78889999999999887754
No 426
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=27.82 E-value=1.3e+02 Score=19.82 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=24.6
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhh
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~ 381 (430)
+.-.+...||+.+|+|...|...+.++..
T Consensus 16 ~~g~s~~eia~~l~is~~tv~~~~~~~~~ 44 (58)
T smart00421 16 AEGLTNKEIAERLGISEKTVKTHLSNIMR 44 (58)
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35679999999999999999999887643
No 427
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.80 E-value=4.6e+02 Score=24.66 Aligned_cols=100 Identities=13% Similarity=0.118 Sum_probs=45.4
Q ss_pred eEEeeeeecc-cchhhHHHHHHhhcccCCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 014143 2 WIYIFFLFSD-EFTVSRVLCSILEKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREM 80 (430)
Q Consensus 2 ~~~~~~~~~~-~~~~~~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l 80 (430)
|.|+||.|-+ +-+-++.+.|+.+....++- +.-+.-..+.-. ......+++.+=..--.+.+-|..+.-+...+
T Consensus 15 ~~~~f~dfenaqpt~eerei~n~~~evl~d~-~~vl~d~~~y~~----~~~~~r~~iq~~~d~q~~ekaw~av~PlV~r~ 89 (321)
T KOG3951|consen 15 WVEIFVDFENAQPTDEEREIYNMAEEVLQDA-DLVLADVSSYGN----GCYAERNAIQNPADEQLQEKAWGAVVPLVGRT 89 (321)
T ss_pred CcceeeeccccCCChHHHHHHHHHHHHHHhh-HHHHHHHHHHhc----ccHHHHHHhhCCCcHHHHHHHHHhhhHHHHHH
Confidence 8999998876 44555556666665544321 111111111100 00000111111111112222333333344444
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHhcCCCC
Q 014143 81 LTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (430)
Q Consensus 81 ~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (430)
-++.+. .++++|+|..++..+...|-
T Consensus 90 k~~ye~---~~~lek~v~~llg~L~~~pl 115 (321)
T KOG3951|consen 90 KSYYEH---VAKIEKIVPIILGSLSSGPL 115 (321)
T ss_pred HHHHHH---HHHHHHHHHHHHHhhcCCCC
Confidence 444422 34677888889988887553
No 428
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=27.71 E-value=2.7e+02 Score=28.56 Aligned_cols=26 Identities=8% Similarity=-0.004 Sum_probs=16.5
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhh
Q 014143 140 LKLCKIWFDMGEYGRMSKILKELHKS 165 (430)
Q Consensus 140 ~~La~~~~~~g~~~~A~~~l~el~~~ 165 (430)
.+||+..+..|+++-|.+.+++.+..
T Consensus 351 ~~Lg~~AL~~g~~~lAe~c~~k~~d~ 376 (443)
T PF04053_consen 351 KQLGDEALRQGNIELAEECYQKAKDF 376 (443)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHCT-H
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhcCc
Confidence 36677777777777776666665544
No 429
>PRK03837 transcriptional regulator NanR; Provisional
Probab=27.69 E-value=2.1e+02 Score=26.18 Aligned_cols=63 Identities=11% Similarity=0.036 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 335 ~~L~~~i~~~~l~~i~~~Y~~I-~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
+.+++.|++.-+..-.+|=.++ +-..||+.+|+|..-|-.-|..|-.+|.|.-+ +..|+.+..
T Consensus 16 ~~v~~~l~~~I~~g~l~pG~~Lp~E~~Lae~~gVSRt~VREAL~~L~~eGlv~~~--~~~G~~V~~ 79 (241)
T PRK03837 16 EEVEERLEQMIRSGEFGPGDQLPSERELMAFFGVGRPAVREALQALKRKGLVQIS--HGERARVSR 79 (241)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe--cCCceeEec
Confidence 4566667666666667788899 89999999999999999999999999998763 455665543
No 430
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=27.67 E-value=2.4e+02 Score=24.33 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 181 LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 181 ~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
.+.-++......+...+...+...+..-+-. .|+ ...++.+.|.+|+..|+|.+|.+.|.+.-+
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL-----rP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL-----RPN-LKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 3444455556666788888888888766533 233 234678889999999999999999998743
No 431
>KOG3431 consensus Apoptosis-related protein/predicted DNA-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=27.66 E-value=50 Score=27.12 Aligned_cols=53 Identities=15% Similarity=0.288 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeec
Q 014143 339 KNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391 (430)
Q Consensus 339 ~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq 391 (430)
+.++...|.+++.+--+=.|++||=.=-=-..-||.+|.+|+.-|.|.+||+.
T Consensus 39 ~e~r~~~lsQvLdqqAr~RLsrlAlvkpekAq~VE~~lirma~~gQvs~Kise 91 (129)
T KOG3431|consen 39 EEMRQSMLSQVLDQQARERLSRLALVKPEKAQAVENYLIRMAQTGQVSHKISE 91 (129)
T ss_pred HHHHHhHHHHHhhHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCCccccccH
Confidence 33444445555555444444444431111235799999999999999999864
No 432
>PF13518 HTH_28: Helix-turn-helix domain
Probab=27.50 E-value=69 Score=21.29 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=29.2
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeec
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq 391 (430)
-.+...+|..+|++...|..++.+.=..| +.|-.+.
T Consensus 12 g~s~~~~a~~~gis~~tv~~w~~~y~~~G-~~~l~~~ 47 (52)
T PF13518_consen 12 GESVREIAREFGISRSTVYRWIKRYREGG-IEGLKPK 47 (52)
T ss_pred CCCHHHHHHHHCCCHhHHHHHHHHHHhcC-HHHhccC
Confidence 44999999999999999999998887766 4554443
No 433
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=27.37 E-value=1.4e+02 Score=27.08 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=37.6
Q ss_pred hcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeecc
Q 014143 349 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV 392 (430)
Q Consensus 349 i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~ 392 (430)
+.+.++-.+..+||+.+++++.-|+..+..+...|.+...++..
T Consensus 171 ~~~g~~g~s~~eIa~~l~iS~~Tv~~~~~~~~~~~~~~~~~~~~ 214 (225)
T PRK10046 171 FKEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHG 214 (225)
T ss_pred HHcCCCCcCHHHHHHHhCccHHHHHHHHHHHHhCCeEEEEeecC
Confidence 34545567899999999999999999999999999998877763
No 434
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.98 E-value=7.1e+02 Score=27.48 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=21.9
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhh
Q 014143 141 KLCKIWFDMGEYGRMSKILKELHKS 165 (430)
Q Consensus 141 ~La~~~~~~g~~~~A~~~l~el~~~ 165 (430)
-||.+|+..|+|.+|..++-.++..
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk~~ 534 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQDK 534 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhccCh
Confidence 4999999999999999988887754
No 435
>PF08679 DsrD: Dissimilatory sulfite reductase D (DsrD); InterPro: IPR014793 The structure of the dissimilatory sulphite reductase D (DsrD) protein has shown it to contain a winged-helix motif similar to those found in DNA binding proteins []. The structure suggests a possible role for DsrD in transcription or translation of genes, which catalyse dissimilatory sulphite reduction. ; PDB: 1WQ2_B 1UCR_B.
Probab=26.83 E-value=92 Score=22.72 Aligned_cols=35 Identities=9% Similarity=0.225 Sum_probs=27.8
Q ss_pred cccccchhhHHh-HhCCChHHHHHHHHHhhhcCcee
Q 014143 352 PYTRIRIPFISK-ELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 352 ~Y~~I~l~~lA~-~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
+=+..-|.++++ ..+..+.+|.+.+..||.+|++.
T Consensus 16 ~KskfYfkD~~k~~pd~k~R~vKKi~~~LV~Eg~l~ 51 (67)
T PF08679_consen 16 KKSKFYFKDFYKAFPDAKPREVKKIVNELVNEGKLE 51 (67)
T ss_dssp HSS-EEHHHHHHH-TTS-HHHHHHHHHHHHHTTSEE
T ss_pred CCCceeHHHHHHHCCCcCHHHHHHHHHHHHhhCeEE
Confidence 347888999999 56788999999999999999874
No 436
>PHA02591 hypothetical protein; Provisional
Probab=26.79 E-value=60 Score=24.44 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=20.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHH
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVS 378 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~ 378 (430)
.-.|.+.||+.||++.+.|-+++..
T Consensus 58 qGlSqeqIA~~LGVsqetVrKYL~~ 82 (83)
T PHA02591 58 KGFTVEKIASLLGVSVRKVRRYLES 82 (83)
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHhc
Confidence 3567899999999999999887753
No 437
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=26.50 E-value=3.9e+02 Score=22.99 Aligned_cols=112 Identities=8% Similarity=0.054 Sum_probs=64.1
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccCCCC-----------------------C----cchhhcchHHHHHHHHHHHH
Q 014143 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDG-----------------------T----DDQKKGSQLLEVYAIEIQMY 192 (430)
Q Consensus 140 ~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~-----------------------~----~d~~~~~~~~e~~l~~~~l~ 192 (430)
...|...+..|+.++|.+.|.+....+..... + .|-.......+-....++-.
T Consensus 6 i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~ 85 (155)
T PF10938_consen 6 IQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANEL 85 (155)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHH
Confidence 36788888999999999999888776542100 0 00000122344455566678
Q ss_pred HhhcCHHHHHHHHHHHHhhhcc-CCC-chhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 193 TETKNNKKLKQLYQKALAIKSA-IPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 193 ~~~~d~~ka~~~l~~a~~~~~~-~~~-~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
+..|+...|+..++.+..-... +.. |--+-.-....+.-.+.+|+|.+|..-+-.+.++
T Consensus 86 l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~~ 146 (155)
T PF10938_consen 86 LKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALDG 146 (155)
T ss_dssp HHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 8889999999988765321111 111 3222122234466677889999998888887654
No 438
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=26.48 E-value=4.8e+02 Score=25.95 Aligned_cols=94 Identities=15% Similarity=0.251 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHH-HHHHhhhhhhH
Q 014143 57 LKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLK-ALEEAKNERLW 135 (430)
Q Consensus 57 l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e-~l~~~~~~kl~ 135 (430)
++.-|.-|+++|.|++++++|...+..- +..+ +. -++..+.++.. +-+..+.+ |-....=++.|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~-P~Np---V~-~~NRA~AYlk~----------K~FA~AE~DC~~AiaLd~~Y 164 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVY-PHNP---VY-HINRALAYLKQ----------KSFAQAEEDCEAAIALDKLY 164 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccC-CCCc---cc-hhhHHHHHHHH----------HHHHHHHHhHHHHHHhhHHH
Confidence 4556788999999999999998877653 3211 11 12223333321 11111111 11111234566
Q ss_pred HHHhHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014143 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (430)
Q Consensus 136 ~r~~~~La~~~~~~g~~~~A~~~l~el~~~ 165 (430)
.+.+.|-+......|...+|.+-...+...
T Consensus 165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 165 VKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 666666666666777777766555444443
No 439
>PRK10225 DNA-binding transcriptional repressor UxuR; Provisional
Probab=26.47 E-value=2.2e+02 Score=26.40 Aligned_cols=64 Identities=14% Similarity=0.165 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 334 IEDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 334 ~~~L~~~i~~~~l~~i~~~Y~~I-~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
.+.+++.|++.-+..-.+|=.++ +-..||+.+|+|-.-|-.-+..|-.+|.|.- .+..|+.+..
T Consensus 11 ~~~v~~~l~~~I~~g~l~pG~~LpsE~eLa~~~gVSRtpVREAL~~L~~eGlV~~--~~~~G~~V~~ 75 (257)
T PRK10225 11 YQEVGAMIRDLIIKTPYNPGERLPPEREIAEMLDVTRTVVREALIMLEIKGLVEV--RRGAGIYVLD 75 (257)
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE--ecCCEEEEeC
Confidence 35567777766666667888999 6999999999999999999999999999973 3445665543
No 440
>TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR. Members of this family are FadR, a transcriptional regulator of fatty acid metabolism, including both biosynthesis and beta-oxidation. It is found exclusively in a subset of Gammaproteobacteria, with strictly one copy per genome. It has an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR from this family heterologously expressed in Escherichia coli show differences in regulatory response and fatty acid binding profiles. The family is nevertheless designated equivalog, as all member proteins have at least nominally the same function.
Probab=26.32 E-value=1.9e+02 Score=26.44 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 336 DLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 336 ~L~~~i~~~~l~~i~~~Y~~I-~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
..++.|++.-+..-+.|=.++ +-..||+.||+|-.-|-.-|..|-.+|.|. +-+..|+.+..
T Consensus 10 ~v~~~l~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~Le~eGlV~--~~~~~G~~V~~ 72 (235)
T TIGR02812 10 FAEEYIVESIWNNRFPPGSILPAERELSELIGVTRTTLREVLQRLARDGWLT--IQHGKPTKVNN 72 (235)
T ss_pred HHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE--EeCCCccEecC
Confidence 455556555555556788999 799999999999999999999999999997 34445665543
No 441
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=26.04 E-value=2.4e+02 Score=25.34 Aligned_cols=52 Identities=19% Similarity=0.171 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhcCCc--cc-hhhhHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014143 32 PEGALAGFAEVVAMEP--EK-AEWGFK-ALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (430)
Q Consensus 32 ~~~Ai~~~~~ii~~~~--~~-~~~~~k-~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (430)
.+.|+..+..|-+..+ ++ -+..-+ .-.+.+-+|.+.|.++++.+.++.+.+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC
Confidence 3678888888744322 11 122223 3355688999999999999999988774
No 442
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=26.01 E-value=4.7e+02 Score=23.19 Aligned_cols=50 Identities=16% Similarity=0.105 Sum_probs=43.5
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCcee--EeeeccCCEEEEccCCcc
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRID--GHIDQVNRLLERGDRSKG 404 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~--g~IDq~~g~v~~~~~~~~ 404 (430)
-++=++||+.+|+...+|-+.|..+-.+|.+. =..|...|..+..|.-..
T Consensus 32 e~tDeela~~l~i~~~~vrriL~~L~e~~li~~~k~rd~~~~~~~y~w~~~~ 83 (176)
T COG1675 32 ELTDEELAELLGIKKNEVRRILYALYEDGLISYRKKRDEESGWEEYTWYINY 83 (176)
T ss_pred CcChHHHHHHhCccHHHHHHHHHHHHhCCceEEEeecccCCCcEEEEEEech
Confidence 57889999999999999999999999999986 468999998888876543
No 443
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=25.91 E-value=5e+02 Score=24.05 Aligned_cols=75 Identities=13% Similarity=0.033 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcch-hHHHHHHHHHHHHHhhC
Q 014143 201 LKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ-RRIQCLKYLVLANMLME 275 (430)
Q Consensus 201 a~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~-~~~~~lky~~l~~lL~~ 275 (430)
.-.++++|...-.....++....+....|.-|+..|+|.+|.++|..+...|-..+=. -...++..+.-|+...+
T Consensus 157 iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 157 IIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 3444445533222223356666777777888999999999999999997776533311 22345666666766543
No 444
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=25.87 E-value=6.2e+02 Score=24.57 Aligned_cols=126 Identities=10% Similarity=0.152 Sum_probs=76.0
Q ss_pred HHHHHH-HHhhcCCccch-hhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH-HHHhcCCCCC
Q 014143 34 GALAGF-AEVVAMEPEKA-EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNI-MDFVSGSASQ 110 (430)
Q Consensus 34 ~Ai~~~-~~ii~~~~~~~-~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~i-l~~~~~~~~~ 110 (430)
+-|+.| +.|-+++.+++ ..+..+-.+++..|++.+|-+...++...+...- ..+-.++.-++..+ +.++-. +
T Consensus 93 eki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a--~stg~KiDv~l~kiRlg~~y~--d- 167 (412)
T COG5187 93 EKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDA--MSTGLKIDVFLCKIRLGLIYG--D- 167 (412)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HhcccchhhHHHHHHHHHhhc--c-
Confidence 445555 33433444443 3467889999999999999999999998877653 22444444444333 222221 2
Q ss_pred ChhHHHHHHHHHHHHHHHhh--hhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014143 111 NFSLLREFYQTTLKALEEAK--NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (430)
Q Consensus 111 ~~~~~~~~~~~~~e~l~~~~--~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~ 167 (430)
.....+.++.+-..++.-+ +.|...++ -.|-+.....++.+|..++.++..-+.
T Consensus 168 -~~vV~e~lE~~~~~iEkGgDWeRrNRyK~--Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 168 -RKVVEESLEVADDIIEKGGDWERRNRYKV--YKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred -HHHHHHHHHHHHHHHHhCCCHHhhhhHHH--HHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 4455555565555554311 22222233 345555677899999999999887664
No 445
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=25.18 E-value=95 Score=24.98 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 014143 56 ALKQTVKLYYRLGKYKEMMDAYREMLT 82 (430)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~ 82 (430)
-+..++.+|...|..++++++..++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 446689999999999999999998877
No 446
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.14 E-value=6.1e+02 Score=24.26 Aligned_cols=148 Identities=16% Similarity=0.196 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHhhcCCccc-------hhhhHH--------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHH
Q 014143 30 TDPEGALAGFAEVVAMEPEK-------AEWGFK--------ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (430)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~-------~~~~~k--------~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~ 94 (430)
..+-.|+..+....+..... .+|... ..--.+.+|...|++++++.....+... +.. +
T Consensus 69 ~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l-E~~------A 141 (299)
T KOG3081|consen 69 ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL-EAA------A 141 (299)
T ss_pred CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH-HHH------H
Confidence 35678888888887654310 122111 2222367899999999999888774332 111 0
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHh----ccHHHHHHHHHHHHhhccCCC
Q 014143 95 KCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDM----GEYGRMSKILKELHKSCQRED 170 (430)
Q Consensus 95 k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~----g~~~~A~~~l~el~~~~~~~~ 170 (430)
=-|+..+. . .+.++.+..++..+.-.++-+ ...||+-+... +++++|.=+++|+-..+...
T Consensus 142 l~VqI~lk-~---------~r~d~A~~~lk~mq~ided~t----LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T- 206 (299)
T KOG3081|consen 142 LNVQILLK-M---------HRFDLAEKELKKMQQIDEDAT----LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPT- 206 (299)
T ss_pred HHHHHHHH-H---------HHHHHHHHHHHHHHccchHHH----HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCC-
Confidence 01111111 1 112222333332222122222 22456555433 47899999999998876421
Q ss_pred CCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014143 171 GTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (430)
Q Consensus 171 ~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~ 210 (430)
..+..-++-+++.++++..|..++..|..
T Consensus 207 -----------~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 207 -----------PLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred -----------hHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 12333455678899999999999988863
No 447
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=25.14 E-value=6.5e+02 Score=26.02 Aligned_cols=102 Identities=9% Similarity=-0.041 Sum_probs=0.0
Q ss_pred HHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-chhH
Q 014143 143 CKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIM 221 (430)
Q Consensus 143 a~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~-~~~~ 221 (430)
|-++-.+|+.++|.+++.++.++..+++ ..++=|++.-.+--.+.++|.+.++..+..-+........ |-.+
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~~~~~-------f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~ 85 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEKESSP-------FLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFK 85 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHhhcch-------HHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHH
Q ss_pred HHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcch
Q 014143 222 GIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ 258 (430)
Q Consensus 222 ~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~ 258 (430)
|.++-++++|..|...|.-.++.-....++
T Consensus 86 -------~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~ 115 (549)
T PF07079_consen 86 -------ALVAYKQKEYRKALQALSVWKEQIKGTESP 115 (549)
T ss_pred -------HHHHHHhhhHHHHHHHHHHHHhhhcccccc
No 448
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=25.12 E-value=3.1e+02 Score=20.87 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=46.0
Q ss_pred cccchhhHHhHh-CCChHHHHHHHHHhhhcCceeEeeeccCC-EEEEccCC---ccchHHHHHHHHHHHH
Q 014143 354 TRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNR-LLERGDRS---KGMKKYTAIDKWNSQL 418 (430)
Q Consensus 354 ~~I~l~~lA~~l-~l~~~evE~~l~~lI~~g~i~g~IDq~~g-~v~~~~~~---~~~~~~~~l~~w~~~v 418 (430)
....|++|.+.+ |++...+-.-|..|...|.+.-.++.... .+...-++ ........+.+|+.+-
T Consensus 17 g~~rf~el~~~l~~is~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~~~l~~l~~W~~~~ 86 (90)
T PF01638_consen 17 GPMRFSELQRRLPGISPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELLPVLEALEEWGEEH 86 (90)
T ss_dssp SSEEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHhcchhHHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHHHHHHHHHHHHHHH
Confidence 688999999999 89999999999999999999876665443 33332221 1223456777787753
No 449
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=25.07 E-value=4.4e+02 Score=24.76 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhhc----cCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHH
Q 014143 201 LKQLYQKALAIKS----AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (430)
Q Consensus 201 a~~~l~~a~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea 248 (430)
.+.++++|.+-.. ...||.++ ..-|.++..+++|..|..+|.-+
T Consensus 69 r~~fi~~ai~WS~~~~~~~Gdp~LH----~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 69 RKKFIKAAIKWSKFGSYKFGDPELH----HLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHHHHHHHHHTSS-TT--HHHH----HHHHHHHHHTT-HHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHH----HHHHHHHHhhccHHHHHHHHHhc
Confidence 4445555544331 12245544 44578888999999999998765
No 450
>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms. Ufm1 is known to covalently attach with cellular protein(s) via a specific E1-activating enzyme (Uba5), an E2-conjugating enzyme (Ufc1), and a E3-ligating enzyme []. This entry represents E3 UFM1-protein ligase 1.
Probab=24.59 E-value=1.7e+02 Score=27.88 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=37.7
Q ss_pred HHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeec
Q 014143 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391 (430)
Q Consensus 345 ~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq 391 (430)
.+..+.+| ++++.+.+..+++..-+-..+-++|..|.+.|+|--
T Consensus 185 ~l~a~T~P---t~l~~l~~~~~~~~~l~~~il~~Li~~~~l~G~i~G 228 (272)
T PF09743_consen 185 ALSAITRP---TPLSSLLKRYGFEEKLFQSILEELIKSGELPGSIVG 228 (272)
T ss_pred HHhcCccc---eEHHHHHHHhCCcHHHHHHHHHHHHhcCcceEEEEC
Confidence 34445555 889999999999999999999999999999999866
No 451
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental
Probab=24.44 E-value=94 Score=20.71 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=24.4
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhh
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~ 381 (430)
+.-.+...||+.++++..-++..+.++..
T Consensus 13 ~~~~s~~eia~~l~~s~~tv~~~~~~~~~ 41 (57)
T cd06170 13 AEGKTNKEIADILGISEKTVKTHLRNIMR 41 (57)
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35679999999999999999999877643
No 452
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=24.43 E-value=1.4e+02 Score=25.72 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=37.7
Q ss_pred hcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 349 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 349 i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
+.+.--.+...+||+.|++++.-|-.++-+|-..|.++=. +.|-+..++.
T Consensus 18 l~~~~~~~~~~diA~~L~Vsp~sVt~ml~rL~~~GlV~~~---~y~gi~LT~~ 67 (154)
T COG1321 18 LLEEKGFARTKDIAERLKVSPPSVTEMLKRLERLGLVEYE---PYGGVTLTEK 67 (154)
T ss_pred HHhccCcccHHHHHHHhCCCcHHHHHHHHHHHHCCCeEEe---cCCCeEEChh
Confidence 4444567899999999999999999999999988766421 4555666643
No 453
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=24.27 E-value=1.1e+02 Score=27.31 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=31.9
Q ss_pred cchhhHHhHhCCC-hHHHHHHHHHhhhcCceeEeeecc
Q 014143 356 IRIPFISKELNVP-EKDVEQLLVSLILDNRIDGHIDQV 392 (430)
Q Consensus 356 I~l~~lA~~l~l~-~~evE~~l~~lI~~g~i~g~IDq~ 392 (430)
.+..+||+.+|++ ..-|-..|.+|...|-|...-.+.
T Consensus 26 ~~~~ela~~~~~~s~~tv~~~l~~L~~~g~i~~~~~~~ 63 (199)
T TIGR00498 26 PSIREIARAVGLRSPSAAEEHLKALERKGYIERDPGKP 63 (199)
T ss_pred CcHHHHHHHhCCCChHHHHHHHHHHHHCCCEecCCCCC
Confidence 7889999999998 999999999999999987553333
No 454
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=24.13 E-value=59 Score=36.24 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=28.6
Q ss_pred hHHhHhCCCh------HHHHHHHHHhhhcCceeE-eeeccCCE
Q 014143 360 FISKELNVPE------KDVEQLLVSLILDNRIDG-HIDQVNRL 395 (430)
Q Consensus 360 ~lA~~l~l~~------~evE~~l~~lI~~g~i~g-~IDq~~g~ 395 (430)
.|..+.|+-+ +++=.++.+++.+|.++| +||+++|.
T Consensus 263 dIn~L~~lRvE~~~VF~~tH~li~~L~~~G~vdGlRIDHiDGL 305 (879)
T PRK14511 263 DVNTLAAVRVEDPEVFEETHALILRLLREGLVDGLRIDHPDGL 305 (879)
T ss_pred cchhheeeecCCHHHHHHHHHHHHHHHHCCCCCeEEeCCCccc
Confidence 4555556643 466789999999999999 99999995
No 455
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=23.79 E-value=1.6e+02 Score=26.16 Aligned_cols=43 Identities=14% Similarity=0.062 Sum_probs=34.4
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
+++-.+||+.+|++..-+-+.+.+|-.+|.|. ...+.|.+.++
T Consensus 168 ~~t~~~lA~~lG~tr~tvsR~l~~l~~~gii~----~~~~~i~i~~~ 210 (211)
T PRK11753 168 KITRQEIGRIVGCSREMVGRVLKMLEDQGLIS----AHGKTIVVYGT 210 (211)
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEecC
Confidence 67779999999999999999999999998774 23455665543
No 456
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.69 E-value=4.1e+02 Score=24.37 Aligned_cols=59 Identities=14% Similarity=0.132 Sum_probs=43.6
Q ss_pred ccCCCCHHHHHHHHHHhhcCCcc-chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 26 GLVETDPEGALAGFAEVVAMEPE-KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 26 ~~~~~~~~~Ai~~~~~ii~~~~~-~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
-++.+++.+|...|...++.-|+ ..+...-++.+-+-...+.+.|+.+++-..+.+.+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~ 164 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN 164 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC
Confidence 36778899999999999987664 233334455556777788888988888888877764
No 457
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=23.58 E-value=1.6e+02 Score=26.67 Aligned_cols=54 Identities=17% Similarity=0.264 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEe
Q 014143 335 EDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (430)
Q Consensus 335 ~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~ 388 (430)
+.+++.|++.-+..-++|=.+++-..||+.||+|-.-|-.-|..|..+|.+.-+
T Consensus 14 e~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGLV~~~ 67 (221)
T PRK11414 14 LQVENDLKHQLSIGALKPGARLITKNLAEQLGMSITPVREALLRLVSVNALSVA 67 (221)
T ss_pred HHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCchhHHHHHHHHHHCCCEEec
Confidence 456666766666666788888999999999999999999999999999999743
No 458
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=23.55 E-value=2.5e+02 Score=31.05 Aligned_cols=58 Identities=14% Similarity=0.295 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEE
Q 014143 333 YIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (430)
Q Consensus 333 ~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (430)
+++.+.+.| -...+--..|++.++|+.+++|.+.+-..|..- ..+.|+|++| .|.++.
T Consensus 117 Yld~iaeEI-----ne~LqE~G~isI~eLa~~~~Lpsefl~~~l~~r-lG~iI~g~~~--g~~lyT 174 (803)
T PLN03083 117 YWDSIAEEI-----NERLQECSQIALAELARQLQVGSELVTSMLEPR-LGTIVKARLE--GGQLYT 174 (803)
T ss_pred HHHHHHHHH-----HHHHHHcCcChHHHHHHhcCChHHHHHHHHHHH-hccceEEEec--CCEEec
Confidence 445544444 233445689999999999999999999999887 4578899993 455543
No 459
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=23.31 E-value=1.5e+02 Score=27.67 Aligned_cols=42 Identities=14% Similarity=0.183 Sum_probs=34.0
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeE
Q 014143 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (430)
Q Consensus 346 l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g 387 (430)
++.++.....+++++||+.+|+|..-+-.++..|...|-+.-
T Consensus 19 IL~~l~~~~~l~l~eia~~lgl~kstv~Rll~tL~~~G~l~~ 60 (257)
T PRK15090 19 ILQALGEEREIGITELSQRVMMSKSTVYRFLQTMKTLGYVAQ 60 (257)
T ss_pred HHHHhhcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 333333335699999999999999999999999999998743
No 460
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.11 E-value=8.8e+02 Score=25.34 Aligned_cols=133 Identities=18% Similarity=0.337 Sum_probs=76.8
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH--hcCCCCCChhHHHHHHHHHHHHHHHhhhhh-hHHH
Q 014143 61 VKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDF--VSGSASQNFSLLREFYQTTLKALEEAKNER-LWFK 137 (430)
Q Consensus 61 ~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~--~~~~~~~~~~~~~~~~~~~~e~l~~~~~~k-l~~r 137 (430)
++|--..|+-+...+.|..-+.-.-+...|.+...-|=-=+++ +.+.--.+.+....+|..|++.| +-++ .|.+
T Consensus 329 lrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI---PHkkFtFaK 405 (677)
T KOG1915|consen 329 LRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI---PHKKFTFAK 405 (677)
T ss_pred HHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc---CcccchHHH
Confidence 3445555777777777776655442223333333333222222 11111122445566777776642 2223 4447
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014143 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (430)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~ 209 (430)
+-+..|++...+.+.+.|.++|...--.|+. ++ +..-| +.+-+.++++++++.+|.+=.
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-----~K-----lFk~Y---IelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAIGKCPK-----DK-----LFKGY---IELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhccCCc-----hh-----HHHHH---HHHHHHHhhHHHHHHHHHHHH
Confidence 7788899999999999999999988888864 21 12222 234556778888888877643
No 461
>PF09202 Rio2_N: Rio2, N-terminal; InterPro: IPR015285 This N-terminal domain is found in RIO2 kinases, and is structurally homologous to the winged helix (wHTH) domain. It adopts a structure consisting of four alpha helices followed by two beta strands and a fifth alpha helix. The domain confers DNA binding properties to the protein, as per other winged helix domains []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A.
Probab=23.08 E-value=2.1e+02 Score=21.85 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=35.8
Q ss_pred cccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCE
Q 014143 350 IKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (430)
Q Consensus 350 ~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~ 395 (430)
.+.|.-|+++-|++..|++..+++..|.+++..|.+.-+.-.-+|.
T Consensus 19 mk~hE~VP~~~I~~~s~l~~~~~~~~L~~L~~~kLv~~~~~~Y~GY 64 (82)
T PF09202_consen 19 MKNHEWVPLELIEKISGLSEGEVEKRLKRLVKLKLVSRRNKPYDGY 64 (82)
T ss_dssp TTT-SSEEHHHHHHHHT--HHHHHHHHHHHHHTTSEEEE-SSS-EE
T ss_pred ccCCccCCHHHHHHHhCcCHHHHHHHHHHHHhcCCccccCCCcceE
Confidence 5789999999999999999999999999999999997754444454
No 462
>PRK04217 hypothetical protein; Provisional
Probab=22.91 E-value=1.4e+02 Score=24.16 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=30.4
Q ss_pred cccccchhhHHhHhCCChHHHHH-------HHHHhhhcCceeEeeeccCC
Q 014143 352 PYTRIRIPFISKELNVPEKDVEQ-------LLVSLILDNRIDGHIDQVNR 394 (430)
Q Consensus 352 ~Y~~I~l~~lA~~l~l~~~evE~-------~l~~lI~~g~i~g~IDq~~g 394 (430)
.+.-+++++||+.+|+|..-|.. .|.+++..+...+.+.+.+.
T Consensus 55 ~~eGlS~~EIAk~LGIS~sTV~r~L~RArkkLre~L~~~~~~~~~~~~~~ 104 (110)
T PRK04217 55 DYEGLTQEEAGKRMGVSRGTVWRALTSARKKVAQMLVEGRELIILPQGNE 104 (110)
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhccceeEecCCcc
Confidence 34677999999999999866544 45566666666666665543
No 463
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=22.81 E-value=85 Score=20.31 Aligned_cols=29 Identities=14% Similarity=0.395 Sum_probs=22.2
Q ss_pred ccc-cccchhhHHhHhCCChHHHHHHHHHh
Q 014143 351 KPY-TRIRIPFISKELNVPEKDVEQLLVSL 379 (430)
Q Consensus 351 ~~Y-~~I~l~~lA~~l~l~~~evE~~l~~l 379 (430)
-|| +.-....||+..|++..+|..+.++.
T Consensus 8 nPYPs~~ek~~L~~~tgls~~Qi~~WF~Na 37 (40)
T PF05920_consen 8 NPYPSKEEKEELAKQTGLSRKQISNWFINA 37 (40)
T ss_dssp SGS--HHHHHHHHHHHTS-HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 466 66677889999999999999988764
No 464
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=22.66 E-value=9.2e+02 Score=25.44 Aligned_cols=97 Identities=10% Similarity=0.104 Sum_probs=48.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHH
Q 014143 59 QTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKT 138 (430)
Q Consensus 59 ~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~ 138 (430)
+++..|-+ ++...+.++|.+.+-.+-+.-.-+++.+.=.++.+.+++ + ...++....+ ++. +++...+.+
T Consensus 137 eLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~d--D-----~D~fl~l~~k-iqt-~lg~~~~~V 206 (711)
T COG1747 137 ELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGD--D-----KDFFLRLQKK-IQT-KLGEGRGSV 206 (711)
T ss_pred HHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccc--c-----HHHHHHHHHH-HHH-hhccchHHH
Confidence 34444444 677777777776665541211122222222333333322 2 2233333322 333 233333323
Q ss_pred hH-HHHHHHHHhccHHHHHHHHHHHHhh
Q 014143 139 NL-KLCKIWFDMGEYGRMSKILKELHKS 165 (430)
Q Consensus 139 ~~-~La~~~~~~g~~~~A~~~l~el~~~ 165 (430)
.+ .+-.-|.+..+|++|.+++..+.+.
T Consensus 207 l~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 207 LMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 22 3335566778999999999988876
No 465
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=22.51 E-value=1.5e+02 Score=27.11 Aligned_cols=55 Identities=18% Similarity=0.278 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEe
Q 014143 334 IEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (430)
Q Consensus 334 ~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~ 388 (430)
.+.+++.+++.-+.--+.|=++++-..||+.+|+|.--|-.-|.++-.+|.|.-.
T Consensus 18 ~~~vy~~Lr~~Il~g~l~pG~~l~e~~La~~~gvSrtPVReAL~rL~~eGlv~~~ 72 (230)
T COG1802 18 ADQVYEELREAILSGELAPGERLSEEELAEELGVSRTPVREALRRLEAEGLVEIE 72 (230)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCccHHHHHHHhCCCCccHHHHHHHHHHCCCeEec
Confidence 3456666666666666789999999999999999999999999999999999766
No 466
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=22.48 E-value=6.1e+02 Score=23.31 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=39.8
Q ss_pred HHHHHhcc-cccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeecc
Q 014143 344 QVLLKLIK-PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV 392 (430)
Q Consensus 344 ~~l~~i~~-~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~ 392 (430)
+-+++.++ |=...|-+++|+.+|+|---+.+.+--|+..|.+.+.|-.+
T Consensus 161 ~~i~~~~~~~~~~~Taeela~~~giSRvTaRRYLeyl~~~~~l~a~i~yG 210 (224)
T COG4565 161 QKVREALKEPDQELTAEELAQALGISRVTARRYLEYLVSNGILEAEIHYG 210 (224)
T ss_pred HHHHHHHhCcCCccCHHHHHHHhCccHHHHHHHHHHHHhcCeeeEEeecc
Confidence 34444444 55788999999999999999999999999999998766544
No 467
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=22.43 E-value=2.4e+02 Score=25.58 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=34.4
Q ss_pred cchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 356 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 356 I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
.+-.+||+.+|++.+-+-+.+.+|-.+|.|.- ..+.|++.+.
T Consensus 170 ~t~~~lA~~lG~sretvsR~L~~L~~~G~I~~----~~~~i~I~d~ 211 (226)
T PRK10402 170 EKHTQAAEYLGVSYRHLLYVLAQFIQDGYLKK----SKRGYLIKNR 211 (226)
T ss_pred chHHHHHHHHCCcHHHHHHHHHHHHHCCCEEe----eCCEEEEeCH
Confidence 46799999999999999999999999987743 3566777654
No 468
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=22.28 E-value=58 Score=35.32 Aligned_cols=41 Identities=24% Similarity=0.440 Sum_probs=31.7
Q ss_pred ccccchhhHHhHhCCChH------HHHHHHHHhhhcCceeE-eeeccCCE
Q 014143 353 YTRIRIPFISKELNVPEK------DVEQLLVSLILDNRIDG-HIDQVNRL 395 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~------evE~~l~~lI~~g~i~g-~IDq~~g~ 395 (430)
|+| |=+|..+.|+.++ +.-.+|.+++.+|.|+| +||+++|.
T Consensus 261 yRR--FF~Vn~L~glRvEd~~VF~~tH~li~~L~~eglidGlRIDHiDGL 308 (889)
T COG3280 261 YRR--FFDVNSLAGLRVEDPAVFEATHRLIFELLREGLIDGLRIDHIDGL 308 (889)
T ss_pred eee--eeeccchheeeeccHHHHHHHHHHHHHHHHhccccceeecccccc
Confidence 554 3456777777653 45678999999999999 99999984
No 469
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=22.11 E-value=1.8e+02 Score=28.81 Aligned_cols=57 Identities=11% Similarity=0.071 Sum_probs=35.6
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014143 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (430)
Q Consensus 141 ~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~ 209 (430)
.-|.-|+.+|+|++|.+++..--..... ---++...+-.|+.++.+..|..-.+.|.
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~------------NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPH------------NPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCC------------CccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 4577889999999999988765544221 11133444555666666666665555543
No 470
>PF04297 UPF0122: Putative helix-turn-helix protein, YlxM / p13 like; InterPro: IPR007394 Members of this family are predicted to contain a helix-turn-helix motif, for example residues 37-55 in Mycoplasma mycoides p13 (O05290 from SWISSPROT). Genes encoding family members are often part of operons that encode components of the SRP pathway, and this protein may regulate the expression of an operon related to the SRP pathway [].; PDB: 1S7O_A 1XSV_B.
Probab=22.02 E-value=85 Score=25.06 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=23.7
Q ss_pred HHHHhcccc--cccchhhHHhHhCCChHHHHHHHHHhh
Q 014143 345 VLLKLIKPY--TRIRIPFISKELNVPEKDVEQLLVSLI 380 (430)
Q Consensus 345 ~l~~i~~~Y--~~I~l~~lA~~l~l~~~evE~~l~~lI 380 (430)
.=+++++.| .-.|+++||+.+|+|.+-|-+.+-++.
T Consensus 21 kQ~~~l~lyy~eDlSlsEIAe~~~iSRqaV~d~ikr~~ 58 (101)
T PF04297_consen 21 KQREILELYYEEDLSLSEIAEELGISRQAVYDSIKRAE 58 (101)
T ss_dssp HHHHHHHHHCTS---HHHHHHHCTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334454443 789999999999999988887777654
No 471
>PRK12514 RNA polymerase sigma factor; Provisional
Probab=21.97 E-value=1.8e+02 Score=25.08 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=24.5
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhh
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLI 380 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI 380 (430)
+.-.+.++||+.+|+|+.-|...+.++.
T Consensus 143 ~~g~s~~eIA~~lgis~~tV~~~l~Rar 170 (179)
T PRK12514 143 LEGLSYKELAERHDVPLNTMRTWLRRSL 170 (179)
T ss_pred HcCCCHHHHHHHHCCChHHHHHHHHHHH
Confidence 5677899999999999999998888754
No 472
>TIGR02394 rpoS_proteo RNA polymerase sigma factor RpoS. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoS (also called sigma-38, KatF, etc.), found only in Proteobacteria. This sigma factor is induced in stationary phase (in response to the stress of nutrient limitation) and becomes the second prinicipal sigma factor at that time. RpoS is a member of the larger Sigma-70 subfamily (TIGR02937) and most closely related to RpoD (TIGR02393).
Probab=21.90 E-value=1.6e+02 Score=28.04 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=27.2
Q ss_pred cccccccchhhHHhHhCCChHHHHHHHHHhhh
Q 014143 350 IKPYTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (430)
Q Consensus 350 ~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~ 381 (430)
...|.-.|+.+||+.+|+|+.-|...+.+++.
T Consensus 237 L~~~e~~s~~EIA~~Lgis~~tVk~~l~rAlk 268 (285)
T TIGR02394 237 LLGYEPATLEEVAAEVGLTRERVRQIQVEALK 268 (285)
T ss_pred CCCCCCccHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34578899999999999999999998887653
No 473
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=21.72 E-value=99 Score=20.46 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=18.8
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcC
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDN 383 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g 383 (430)
-.+...||+.+|+|..-|-.++.+.-..|
T Consensus 17 G~s~~~ia~~lgvs~~Tv~~w~kr~~~~G 45 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRSTVYRWIKRYREEG 45 (50)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHT------
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHccccc
Confidence 77899999999999999999988766555
No 474
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=21.59 E-value=96 Score=19.84 Aligned_cols=37 Identities=5% Similarity=0.003 Sum_probs=24.9
Q ss_pred chhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEE
Q 014143 357 RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (430)
Q Consensus 357 ~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (430)
++.++|+.+|++..-+-.++. .|.+.+.- .+.|...+
T Consensus 2 s~~e~a~~lgvs~~tl~~~~~----~g~~~~~~-~~~~~~~~ 38 (49)
T cd04762 2 TTKEAAELLGVSPSTLRRWVK----EGKLKAIR-TPGGHRRF 38 (49)
T ss_pred CHHHHHHHHCcCHHHHHHHHH----cCCCCcee-CCCCceec
Confidence 678999999999887776655 57765532 22344444
No 475
>PF10975 DUF2802: Protein of unknown function (DUF2802); InterPro: IPR021244 This bacterial family of proteins has no known function.
Probab=21.43 E-value=93 Score=22.95 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.1
Q ss_pred ccchhhHHhHhCCChHHHHHHH
Q 014143 355 RIRIPFISKELNVPEKDVEQLL 376 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l 376 (430)
=-+.+.|++..|+|..|+|-++
T Consensus 44 Ga~~~el~~~CgL~~aEAeLl~ 65 (70)
T PF10975_consen 44 GASVEELMEECGLSRAEAELLL 65 (70)
T ss_pred CCCHHHHHHHcCCCHHHHHHHH
Confidence 4678999999999999999654
No 476
>PF13613 HTH_Tnp_4: Helix-turn-helix of DDE superfamily endonuclease
Probab=21.32 E-value=1.5e+02 Score=20.20 Aligned_cols=36 Identities=14% Similarity=0.274 Sum_probs=26.9
Q ss_pred HHHHhcccccccchhhHHhHhCCChHHHHHHHHHhh
Q 014143 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLI 380 (430)
Q Consensus 345 ~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI 380 (430)
.++.+..-=...++..||..+|++..-|-+.+...+
T Consensus 9 lll~L~~LR~~~~~~~La~~FgIs~stvsri~~~~~ 44 (53)
T PF13613_consen 9 LLLTLMYLRLNLTFQDLAYRFGISQSTVSRIFHEWI 44 (53)
T ss_pred HHHHHHHHHcCCcHhHHhhheeecHHHHHHHHHHHH
Confidence 334444444678999999999999988887776654
No 477
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=21.29 E-value=2.2e+02 Score=20.22 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 58 KQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 58 ~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
-|++.-|.+.|+++++.+++..+....
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~~~ 53 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSKDL 53 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 456777889999999999999998876
No 478
>PRK04984 fatty acid metabolism regulator; Provisional
Probab=20.90 E-value=2.8e+02 Score=25.29 Aligned_cols=61 Identities=10% Similarity=0.019 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEE
Q 014143 336 DLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (430)
Q Consensus 336 ~L~~~i~~~~l~~i~~~Y~~I-~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (430)
.+++.|++.-+..-..|=.++ +=..||+.+|+|-.-|-.-|..|..+|.|.- -+..|+++.
T Consensus 11 ~~~~~l~~~I~~g~l~pG~~LPsE~eLae~~gVSRt~VReAL~~L~~eGlv~~--~~g~G~~V~ 72 (239)
T PRK04984 11 FAEEYIIESIWNNRFPPGSILPAERELSELIGVTRTTLREVLQRLARDGWLTI--QHGKPTKVN 72 (239)
T ss_pred HHHHHHHHHHHcCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--eCCCeeEeC
Confidence 344445444444445676889 7889999999999999999999999999973 445566664
No 479
>KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=20.67 E-value=68 Score=29.42 Aligned_cols=45 Identities=29% Similarity=0.512 Sum_probs=31.3
Q ss_pred cccccccchhhHHhHhCCCh------HHHHHHHHHhhhcCceeEeeeccCCE
Q 014143 350 IKPYTRIRIPFISKELNVPE------KDVEQLLVSLILDNRIDGHIDQVNRL 395 (430)
Q Consensus 350 ~~~Y~~I~l~~lA~~l~l~~------~evE~~l~~lI~~g~i~g~IDq~~g~ 395 (430)
...|.|+..+.++++||+-. .+=|.++..||..| ++|+|=.++-+
T Consensus 117 lS~YQr~RVEnVC~RL~L~~Ls~LW~rdQ~~LL~eMi~~g-~~AiiiKVAAi 167 (277)
T KOG2316|consen 117 LSDYQRTRVENVCSRLGLVSLSYLWQRDQEELLQEMILSG-LDAIIIKVAAI 167 (277)
T ss_pred HhHHHHHHHHHHHhhhCceeehHHHhccHHHHHHHHHHcC-CCeEEEEEeec
Confidence 34566666777777777632 35577999999999 78877666543
No 480
>PRK09464 pdhR transcriptional regulator PdhR; Reviewed
Probab=20.64 E-value=2.9e+02 Score=25.51 Aligned_cols=63 Identities=10% Similarity=0.140 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 335 ~~L~~~i~~~~l~~i~~~Y~~I-~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
+.+++.+++.-+..-++|=.++ +-..||+.||+|-.-|-.-|..|-.+|.|.-+ +..|+.+..
T Consensus 13 ~~v~~~l~~~I~~g~l~pG~~LpsE~eLa~~lgVSRtpVREAL~~L~~eGlv~~~--~~~G~~V~~ 76 (254)
T PRK09464 13 DVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRR--QGGGTFVQS 76 (254)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe--cCceeEEec
Confidence 3455555555445556777889 89999999999999999999999999999754 345655543
No 481
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=20.60 E-value=5.8e+02 Score=22.31 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=40.0
Q ss_pred HHHHhcc--cccccchhhHHhHh--CCChHHHHHHHHHhhhcCcee----EeeeccCCEEEE
Q 014143 345 VLLKLIK--PYTRIRIPFISKEL--NVPEKDVEQLLVSLILDNRID----GHIDQVNRLLER 398 (430)
Q Consensus 345 ~l~~i~~--~Y~~I~l~~lA~~l--~l~~~evE~~l~~lI~~g~i~----g~IDq~~g~v~~ 398 (430)
+++.++. |+.. +...||+.+ ++|.++|+.-|--|..-|.|. |+--+.+..|..
T Consensus 28 ~ir~l~~l~~~~~-d~~~iak~l~p~is~~ev~~sL~~L~~~gli~k~~~g~y~~t~~~l~~ 88 (171)
T PF14394_consen 28 AIRELLPLMPFAP-DPEWIAKRLRPKISAEEVRDSLEFLEKLGLIKKDGDGKYVQTDKSLTT 88 (171)
T ss_pred HHHHHhhcCCCCC-CHHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEECCCCcEEEecceeeC
Confidence 3444443 3443 899999999 999999999999999999994 455566666653
No 482
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=20.48 E-value=1e+02 Score=21.08 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=19.5
Q ss_pred ccccchhhHHhHhCCChHHHHHHHH
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLV 377 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~ 377 (430)
..+|+=..||+.+|+++..|-+-++
T Consensus 26 ~~~vSS~~La~~~gi~~~qVRKDlS 50 (50)
T PF06971_consen 26 VERVSSQELAEALGITPAQVRKDLS 50 (50)
T ss_dssp -SEE-HHHHHHHHTS-HHHHHHHHH
T ss_pred CeeECHHHHHHHHCCCHHHhcccCC
Confidence 5799999999999999999987654
No 483
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=20.43 E-value=90 Score=19.92 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=14.5
Q ss_pred chhhHHhHhCCChHHHHHH
Q 014143 357 RIPFISKELNVPEKDVEQL 375 (430)
Q Consensus 357 ~l~~lA~~l~l~~~evE~~ 375 (430)
++..||+.++++.+++..+
T Consensus 8 tl~~IA~~~~~~~~~l~~~ 26 (44)
T PF01476_consen 8 TLWSIAKRYGISVDELMEL 26 (44)
T ss_dssp -HHHHHHHTTS-HHHHHHH
T ss_pred cHHHHHhhhhhhHhHHHHh
Confidence 5788999999999988764
No 484
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=20.36 E-value=3.2e+02 Score=19.19 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=31.1
Q ss_pred cccccchhhHHhHhCCChHH-HHHHHHHhhhcCceeEeeeccCCEEEEcc
Q 014143 352 PYTRIRIPFISKELNVPEKD-VEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (430)
Q Consensus 352 ~Y~~I~l~~lA~~l~l~~~e-vE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (430)
...-|+++.+.+.+|.+..+ ....+.+++.+|.+ ...++.+.+++
T Consensus 17 ~~~Gi~~~~~~~~~g~~~~~~~~~~l~~l~~~Gll----~~~~~~l~lT~ 62 (66)
T PF06969_consen 17 CNEGIDLSEFEQRFGIDFAEEFQKELEELQEDGLL----EIDGGRLRLTE 62 (66)
T ss_dssp HHSEEEHHHHHHHTT--THHH-HHHHHHHHHTTSE----EE-SSEEEE-T
T ss_pred hHCCcCHHHHHHHHCcCHHHHHHHHHHHHHHCCCE----EEeCCEEEECc
Confidence 35789999999999998544 48889999999776 44556666654
No 485
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=20.23 E-value=1.6e+02 Score=28.64 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=40.8
Q ss_pred HHhccc-c-cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccC
Q 014143 347 LKLIKP-Y-TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN 393 (430)
Q Consensus 347 ~~i~~~-Y-~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~ 393 (430)
.++..- | .-.+=++||+.||+|-..|-++|.++...|-+.=+|+.+.
T Consensus 19 ~~vA~lYY~~g~tQ~eIA~~lgiSR~~VsRlL~~Ar~~GiV~I~I~~~~ 67 (318)
T PRK15418 19 ARIAWFYYHDGLTQSEIGERLGLTRLKVSRLLEKGRQSGIIRVQINSRF 67 (318)
T ss_pred HHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHcCcEEEEEeCCC
Confidence 344443 3 7889999999999999999999999999999999998764
Done!