Query 014143
Match_columns 430
No_of_seqs 216 out of 1092
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 06:14:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014143.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014143hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3txn_A 26S proteasome regulato 100.0 9.5E-63 3.3E-67 487.0 34.0 364 50-425 15-390 (394)
2 4b4t_P 26S proteasome regulato 100.0 1.8E-57 6.3E-62 461.4 25.4 393 17-426 17-427 (445)
3 4b4t_Q 26S proteasome regulato 100.0 2.2E-44 7.6E-49 361.8 38.6 396 20-423 7-424 (434)
4 4b4t_R RPN7, 26S proteasome re 100.0 2E-43 6.8E-48 357.3 18.2 396 14-425 6-421 (429)
5 4b4t_O 26S proteasome regulato 100.0 3.9E-28 1.3E-32 242.0 23.9 282 143-428 83-387 (393)
6 4b4t_S RPN3, 26S proteasome re 99.9 1.1E-21 3.7E-26 197.4 16.9 237 182-423 231-470 (523)
7 3t5x_A PCI domain-containing p 99.8 1.9E-20 6.5E-25 169.1 12.8 170 221-402 13-194 (203)
8 3t5v_B Nuclear mRNA export pro 99.8 1.3E-17 4.5E-22 167.2 28.0 332 55-401 43-429 (455)
9 1ufm_A COP9 complex subunit 4; 99.7 1.8E-18 6E-23 132.5 4.2 73 332-404 7-79 (84)
10 3chm_A COP9 signalosome comple 99.3 8.2E-12 2.8E-16 108.4 10.8 132 263-405 25-161 (169)
11 3sf4_A G-protein-signaling mod 99.2 6.8E-09 2.3E-13 101.3 27.6 237 13-257 5-262 (406)
12 3ro2_A PINS homolog, G-protein 99.2 1.1E-08 3.6E-13 96.5 27.7 222 28-257 17-258 (338)
13 4a1s_A PINS, partner of inscut 99.2 1.5E-08 5.1E-13 99.6 27.3 229 21-257 52-298 (411)
14 3ulq_A Response regulator aspa 99.1 2.5E-08 8.6E-13 97.8 25.5 211 28-248 115-332 (383)
15 3sf4_A G-protein-signaling mod 99.1 2.6E-08 8.8E-13 97.1 25.2 221 30-258 101-343 (406)
16 3ro2_A PINS homolog, G-protein 99.1 1.3E-08 4.3E-13 96.0 22.0 134 114-253 201-334 (338)
17 3q15_A PSP28, response regulat 99.1 8.6E-08 2.9E-12 93.9 26.6 187 28-224 113-303 (378)
18 4a1s_A PINS, partner of inscut 99.0 2.9E-08 1E-12 97.5 22.9 221 30-258 140-379 (411)
19 3edt_B KLC 2, kinesin light ch 99.0 6.5E-08 2.2E-12 89.0 22.0 218 28-251 13-281 (283)
20 3nf1_A KLC 1, kinesin light ch 98.9 2.1E-07 7.2E-12 87.1 23.8 217 29-251 40-307 (311)
21 2ifu_A Gamma-SNAP; membrane fu 98.9 2.6E-07 8.8E-12 88.1 23.3 211 30-249 5-222 (307)
22 1qqe_A Vesicular transport pro 98.9 9.4E-07 3.2E-11 83.5 26.8 236 54-331 37-274 (292)
23 1qqe_A Vesicular transport pro 98.8 7.7E-07 2.6E-11 84.1 23.1 192 15-214 34-231 (292)
24 3q15_A PSP28, response regulat 98.8 1.1E-06 3.6E-11 86.0 23.0 207 55-272 102-309 (378)
25 3uq3_A Heat shock protein STI1 98.7 8.8E-06 3E-10 73.6 26.5 199 29-253 18-238 (258)
26 3ulq_A Response regulator aspa 98.7 3.8E-06 1.3E-10 82.0 25.4 203 60-273 109-313 (383)
27 3nf1_A KLC 1, kinesin light ch 98.7 7.5E-06 2.5E-10 76.3 26.0 197 51-253 24-226 (311)
28 3gw4_A Uncharacterized protein 98.7 5.2E-06 1.8E-10 72.6 23.1 182 27-259 3-184 (203)
29 3u3w_A Transcriptional activat 98.7 2.3E-06 8E-11 80.6 21.2 198 53-258 74-273 (293)
30 2qfc_A PLCR protein; TPR, HTH, 98.6 3.9E-06 1.3E-10 79.0 20.9 199 54-260 75-275 (293)
31 3u3w_A Transcriptional activat 98.6 2.3E-06 7.9E-11 80.6 18.9 188 27-222 86-277 (293)
32 3vtx_A MAMA; tetratricopeptide 98.6 4.5E-06 1.5E-10 72.3 19.0 153 29-251 18-170 (184)
33 2pl2_A Hypothetical conserved 98.6 1.2E-05 4.2E-10 72.2 22.5 192 29-248 18-211 (217)
34 3ro3_A PINS homolog, G-protein 98.6 6.3E-06 2.2E-10 68.5 19.2 157 50-254 5-161 (164)
35 2ifu_A Gamma-SNAP; membrane fu 98.6 7.8E-06 2.7E-10 77.7 21.8 175 29-213 49-225 (307)
36 4eqf_A PEX5-related protein; a 98.6 4E-06 1.4E-10 80.9 19.5 201 29-252 78-311 (365)
37 3qky_A Outer membrane assembly 98.5 1.9E-05 6.6E-10 72.6 22.9 187 18-253 16-226 (261)
38 3hym_B Cell division cycle pro 98.5 1.4E-05 4.8E-10 75.1 21.4 194 31-251 106-299 (330)
39 2qfc_A PLCR protein; TPR, HTH, 98.5 7.7E-06 2.6E-10 77.0 19.4 185 28-220 87-275 (293)
40 1fch_A Peroxisomal targeting s 98.5 2.4E-05 8.3E-10 75.0 22.8 201 29-252 77-315 (368)
41 2ho1_A Type 4 fimbrial biogene 98.5 2.2E-05 7.5E-10 71.2 20.9 190 29-252 50-239 (252)
42 1hz4_A MALT regulatory protein 98.5 0.00012 4.2E-09 70.7 27.3 213 28-250 26-243 (373)
43 2vq2_A PILW, putative fimbrial 98.5 8.9E-05 3E-09 65.3 24.1 190 29-250 21-210 (225)
44 2q7f_A YRRB protein; TPR, prot 98.4 1.2E-05 4E-10 72.3 18.2 196 20-251 26-222 (243)
45 3u4t_A TPR repeat-containing p 98.4 1.6E-05 5.6E-10 72.8 18.7 122 29-165 16-137 (272)
46 3ieg_A DNAJ homolog subfamily 98.4 2.9E-05 1E-09 73.6 20.9 196 29-252 133-336 (359)
47 4eqf_A PEX5-related protein; a 98.4 4.5E-05 1.5E-09 73.4 22.2 196 34-251 45-276 (365)
48 4b0z_A RPN12, 26S proteasome r 98.4 6.1E-06 2.1E-10 75.4 14.9 183 191-378 16-214 (229)
49 2yhc_A BAMD, UPF0169 lipoprote 98.4 4.6E-05 1.6E-09 68.7 20.1 171 20-210 7-212 (225)
50 3u4t_A TPR repeat-containing p 98.4 2.9E-05 9.8E-10 71.2 19.0 170 55-253 4-173 (272)
51 3hym_B Cell division cycle pro 98.4 4.2E-05 1.4E-09 71.8 20.5 189 29-252 35-223 (330)
52 3cv0_A Peroxisome targeting si 98.3 0.0002 6.8E-09 67.0 24.7 61 20-84 24-85 (327)
53 3cv0_A Peroxisome targeting si 98.3 6.9E-05 2.4E-09 70.2 21.4 194 29-254 68-272 (327)
54 3ieg_A DNAJ homolog subfamily 98.3 0.0001 3.6E-09 69.7 22.8 204 29-251 84-301 (359)
55 2y4t_A DNAJ homolog subfamily 98.3 0.00022 7.4E-09 70.4 25.5 204 29-251 107-324 (450)
56 2y4t_A DNAJ homolog subfamily 98.3 0.00011 3.7E-09 72.6 22.3 194 29-251 156-358 (450)
57 3as5_A MAMA; tetratricopeptide 98.3 9.3E-05 3.2E-09 62.8 19.0 154 29-252 21-174 (186)
58 1fch_A Peroxisomal targeting s 98.2 0.0002 7E-09 68.4 22.8 202 28-251 37-280 (368)
59 2xpi_A Anaphase-promoting comp 98.2 9.9E-05 3.4E-09 75.9 21.9 189 29-253 318-506 (597)
60 4i17_A Hypothetical protein; T 98.2 0.00018 6.2E-09 64.3 20.9 126 29-211 20-146 (228)
61 3edt_B KLC 2, kinesin light ch 98.2 6.8E-05 2.3E-09 68.4 18.1 182 66-253 13-200 (283)
62 1hz4_A MALT regulatory protein 98.2 0.00047 1.6E-08 66.5 24.9 197 50-254 10-206 (373)
63 3fp2_A TPR repeat-containing p 98.2 0.00016 5.4E-09 73.1 22.4 193 30-252 290-492 (537)
64 2xpi_A Anaphase-promoting comp 98.2 9.4E-05 3.2E-09 76.0 20.7 103 138-251 477-579 (597)
65 1w3b_A UDP-N-acetylglucosamine 98.2 0.00019 6.5E-09 69.6 21.8 187 29-251 114-300 (388)
66 4b4t_Q 26S proteasome regulato 98.2 0.00016 5.4E-09 71.2 21.4 191 60-259 10-212 (434)
67 1xnf_A Lipoprotein NLPI; TPR, 98.2 0.00025 8.6E-09 64.7 21.2 188 29-250 18-205 (275)
68 1w3b_A UDP-N-acetylglucosamine 98.2 0.00015 5.1E-09 70.4 20.5 52 29-84 46-97 (388)
69 3fp2_A TPR repeat-containing p 98.2 0.00011 3.7E-09 74.3 20.2 192 29-251 256-457 (537)
70 4gyw_A UDP-N-acetylglucosamine 98.2 4E-05 1.4E-09 81.9 17.4 152 29-250 22-173 (723)
71 4abn_A Tetratricopeptide repea 98.2 0.00016 5.4E-09 73.2 21.1 190 29-244 115-314 (474)
72 2gw1_A Mitochondrial precursor 98.1 0.00017 5.9E-09 72.2 20.1 118 138-269 374-494 (514)
73 3uq3_A Heat shock protein STI1 98.1 0.0012 4.1E-08 59.2 23.3 183 53-250 4-201 (258)
74 2gw1_A Mitochondrial precursor 98.0 0.0001 3.6E-09 73.8 16.7 192 29-251 250-444 (514)
75 3ro3_A PINS homolog, G-protein 98.0 0.0002 6.7E-09 59.1 15.7 116 136-257 9-124 (164)
76 3gw4_A Uncharacterized protein 98.0 0.00023 7.9E-09 61.9 16.7 151 29-226 39-191 (203)
77 3urz_A Uncharacterized protein 97.9 0.00036 1.2E-08 62.0 16.5 158 28-252 16-187 (208)
78 2q7f_A YRRB protein; TPR, prot 97.9 0.00055 1.9E-08 61.0 17.3 154 29-212 70-223 (243)
79 3qky_A Outer membrane assembly 97.9 0.00085 2.9E-08 61.3 18.8 142 29-211 65-224 (261)
80 3n71_A Histone lysine methyltr 97.9 0.00012 4E-09 74.6 13.6 140 28-211 321-464 (490)
81 2vq2_A PILW, putative fimbrial 97.9 0.003 1E-07 55.2 21.4 169 53-251 7-176 (225)
82 4gcn_A Protein STI-1; structur 97.9 0.00033 1.1E-08 57.1 13.5 101 139-251 11-112 (127)
83 3vtx_A MAMA; tetratricopeptide 97.8 0.0017 5.7E-08 55.7 18.7 133 53-251 4-136 (184)
84 2vsy_A XCC0866; transferase, g 97.8 0.00033 1.1E-08 72.3 16.3 153 29-251 2-157 (568)
85 4i17_A Hypothetical protein; T 97.8 0.0014 4.8E-08 58.4 18.6 136 55-251 8-146 (228)
86 2ho1_A Type 4 fimbrial biogene 97.8 0.002 6.8E-08 57.9 19.6 168 53-250 36-203 (252)
87 4abn_A Tetratricopeptide repea 97.8 0.00077 2.6E-08 68.1 18.2 186 32-251 84-287 (474)
88 3mkr_A Coatomer subunit epsilo 97.8 0.0024 8.3E-08 59.9 19.9 194 21-254 38-232 (291)
89 1ouv_A Conserved hypothetical 97.8 0.0052 1.8E-07 56.2 21.9 176 30-251 20-215 (273)
90 2yhc_A BAMD, UPF0169 lipoprote 97.8 0.0048 1.6E-07 55.1 21.1 188 52-250 2-212 (225)
91 2pl2_A Hypothetical conserved 97.8 0.0032 1.1E-07 56.1 19.8 165 54-251 5-180 (217)
92 4ga2_A E3 SUMO-protein ligase 97.8 0.00012 4.2E-09 61.6 9.6 119 30-212 11-130 (150)
93 1ouv_A Conserved hypothetical 97.8 0.003 1E-07 57.8 20.0 178 29-250 55-250 (273)
94 4g1t_A Interferon-induced prot 97.8 0.00049 1.7E-08 68.4 15.5 207 30-251 227-459 (472)
95 3mkr_A Coatomer subunit epsilo 97.7 0.021 7.1E-07 53.4 24.7 186 27-252 10-196 (291)
96 1p5q_A FKBP52, FK506-binding p 97.7 0.00054 1.9E-08 65.9 13.6 149 53-252 146-295 (336)
97 2h6f_A Protein farnesyltransfe 97.6 0.0036 1.2E-07 61.4 19.4 181 139-344 169-366 (382)
98 4gyw_A UDP-N-acetylglucosamine 97.6 0.0014 4.6E-08 70.0 17.2 132 53-250 8-139 (723)
99 1xnf_A Lipoprotein NLPI; TPR, 97.6 0.0016 5.5E-08 59.1 15.4 190 29-252 56-245 (275)
100 4gcn_A Protein STI-1; structur 97.6 0.0025 8.7E-08 51.7 14.9 115 53-223 7-121 (127)
101 2pzi_A Probable serine/threoni 97.6 0.0014 4.8E-08 69.4 16.4 153 27-250 402-562 (681)
102 2fo7_A Synthetic consensus TPR 97.5 0.0035 1.2E-07 49.4 15.1 57 141-209 74-130 (136)
103 3as5_A MAMA; tetratricopeptide 97.5 0.0043 1.5E-07 52.1 15.9 121 29-213 55-175 (186)
104 2fo7_A Synthetic consensus TPR 97.5 0.01 3.5E-07 46.6 17.2 130 55-250 2-131 (136)
105 1a17_A Serine/threonine protei 97.5 0.011 3.8E-07 48.9 18.0 134 53-250 12-145 (166)
106 2e2e_A Formate-dependent nitri 97.5 0.0025 8.7E-08 54.3 14.1 121 28-212 22-145 (177)
107 4g1t_A Interferon-induced prot 97.5 0.0032 1.1E-07 62.4 16.8 203 29-252 64-277 (472)
108 1a17_A Serine/threonine protei 97.5 0.0043 1.5E-07 51.5 15.2 125 28-214 25-149 (166)
109 4gco_A Protein STI-1; structur 97.5 0.0019 6.4E-08 52.5 12.4 95 139-251 16-110 (126)
110 1elr_A TPR2A-domain of HOP; HO 97.4 0.0059 2E-07 48.1 14.3 102 139-252 7-109 (131)
111 2xev_A YBGF; tetratricopeptide 97.4 0.0089 3E-07 47.5 15.4 101 140-252 6-106 (129)
112 2r5s_A Uncharacterized protein 97.4 0.0011 3.8E-08 56.8 10.4 154 28-209 18-171 (176)
113 3n71_A Histone lysine methyltr 97.3 0.0063 2.2E-07 61.8 17.0 145 61-250 316-463 (490)
114 4gco_A Protein STI-1; structur 97.3 0.0057 1.9E-07 49.5 13.8 100 53-212 12-111 (126)
115 1hh8_A P67PHOX, NCF-2, neutrop 97.3 0.01 3.6E-07 51.7 16.3 136 21-211 10-150 (213)
116 4ga2_A E3 SUMO-protein ligase 97.2 0.0031 1.1E-07 52.7 11.5 94 139-250 34-128 (150)
117 3qou_A Protein YBBN; thioredox 97.2 0.0045 1.5E-07 57.9 13.3 154 28-209 129-282 (287)
118 2ond_A Cleavage stimulation fa 97.2 0.034 1.1E-06 52.1 19.5 191 32-253 80-272 (308)
119 3upv_A Heat shock protein STI1 97.2 0.014 4.9E-07 46.3 14.7 96 139-252 7-102 (126)
120 3rkv_A Putative peptidylprolyl 97.1 0.034 1.2E-06 46.4 17.2 118 53-212 10-127 (162)
121 3sz7_A HSC70 cochaperone (SGT) 97.1 0.012 4.1E-07 49.4 14.3 97 138-252 13-109 (164)
122 1hh8_A P67PHOX, NCF-2, neutrop 97.1 0.01 3.5E-07 51.8 14.3 135 55-252 7-151 (213)
123 3gyz_A Chaperone protein IPGC; 97.1 0.011 3.8E-07 49.7 13.8 98 137-252 37-134 (151)
124 2vgx_A Chaperone SYCD; alterna 97.1 0.017 5.8E-07 48.1 14.7 112 38-213 9-120 (148)
125 3gyz_A Chaperone protein IPGC; 97.1 0.018 6.1E-07 48.4 14.7 100 53-212 35-134 (151)
126 3q49_B STIP1 homology and U bo 97.1 0.014 4.9E-07 46.8 13.7 96 139-252 12-107 (137)
127 2xcb_A PCRH, regulatory protei 97.1 0.014 4.6E-07 47.9 13.7 112 38-213 6-117 (142)
128 2vsy_A XCC0866; transferase, g 97.1 0.013 4.5E-07 60.1 16.4 123 29-215 36-161 (568)
129 2pzi_A Probable serine/threoni 97.0 0.0062 2.1E-07 64.4 14.0 117 29-210 446-562 (681)
130 2xcb_A PCRH, regulatory protei 97.0 0.027 9.1E-07 46.1 14.9 96 139-252 21-116 (142)
131 3qww_A SET and MYND domain-con 97.0 0.0046 1.6E-07 61.7 11.6 104 29-172 311-418 (433)
132 3qwp_A SET and MYND domain-con 97.0 0.013 4.6E-07 58.3 14.9 104 29-172 300-407 (429)
133 2vgx_A Chaperone SYCD; alterna 96.9 0.024 8.1E-07 47.1 14.3 96 139-252 24-119 (148)
134 1kt0_A FKBP51, 51 kDa FK506-bi 96.9 0.044 1.5E-06 54.8 18.4 145 53-248 267-411 (457)
135 3sz7_A HSC70 cochaperone (SGT) 96.9 0.045 1.5E-06 45.7 15.8 102 53-214 10-111 (164)
136 2vyi_A SGTA protein; chaperone 96.9 0.043 1.5E-06 42.8 14.7 96 138-251 14-109 (131)
137 2lni_A Stress-induced-phosphop 96.9 0.022 7.5E-07 45.0 13.0 95 139-251 19-113 (133)
138 2xev_A YBGF; tetratricopeptide 96.9 0.015 5.3E-07 46.0 12.0 93 29-167 15-107 (129)
139 2fbn_A 70 kDa peptidylprolyl i 96.9 0.033 1.1E-06 48.2 15.1 116 53-212 37-152 (198)
140 3rjv_A Putative SEL1 repeat pr 96.8 0.24 8.1E-06 43.5 21.1 179 32-250 2-196 (212)
141 1elw_A TPR1-domain of HOP; HOP 96.8 0.023 7.9E-07 43.6 12.2 95 139-251 7-101 (118)
142 1hxi_A PEX5, peroxisome target 96.8 0.017 5.7E-07 46.3 11.6 93 140-250 21-113 (121)
143 2dba_A Smooth muscle cell asso 96.8 0.026 8.8E-07 45.6 12.9 99 138-251 30-128 (148)
144 2kck_A TPR repeat; tetratricop 96.8 0.011 3.7E-07 45.2 10.0 97 139-251 9-106 (112)
145 2lni_A Stress-induced-phosphop 96.7 0.026 9E-07 44.5 12.6 28 139-166 87-114 (133)
146 3upv_A Heat shock protein STI1 96.7 0.045 1.5E-06 43.3 13.7 99 54-212 4-102 (126)
147 1wi9_A Protein C20ORF116 homol 96.7 0.004 1.4E-07 44.8 6.1 58 345-402 11-68 (72)
148 1ihg_A Cyclophilin 40; ppiase 96.7 0.045 1.5E-06 53.2 15.8 142 53-244 222-363 (370)
149 1p5q_A FKBP52, FK506-binding p 96.7 0.028 9.6E-07 53.7 14.2 119 29-207 160-290 (336)
150 3rkv_A Putative peptidylprolyl 96.6 0.027 9.4E-07 47.0 12.5 108 138-251 13-126 (162)
151 2ooe_A Cleavage stimulation fa 96.6 0.11 3.6E-06 52.7 19.2 188 34-253 304-494 (530)
152 2xm6_A Protein corresponding t 96.6 0.35 1.2E-05 48.2 22.3 178 29-250 56-251 (490)
153 1na0_A Designed protein CTPR3; 96.5 0.047 1.6E-06 42.2 12.4 96 138-251 11-106 (125)
154 2fbn_A 70 kDa peptidylprolyl i 96.5 0.039 1.3E-06 47.7 13.0 108 138-251 40-151 (198)
155 3mv2_B Coatomer subunit epsilo 96.5 0.21 7.1E-06 47.2 18.6 127 137-276 137-270 (310)
156 2ond_A Cleavage stimulation fa 96.5 0.25 8.7E-06 45.9 19.4 184 33-250 33-231 (308)
157 1elr_A TPR2A-domain of HOP; HO 96.5 0.069 2.4E-06 41.6 13.3 106 53-211 3-108 (131)
158 2vyi_A SGTA protein; chaperone 96.5 0.13 4.3E-06 40.0 14.8 99 53-211 11-109 (131)
159 3k9i_A BH0479 protein; putativ 96.5 0.018 6.1E-07 45.4 9.6 90 29-167 3-92 (117)
160 3q49_B STIP1 homology and U bo 96.4 0.19 6.3E-06 39.9 15.9 102 53-214 8-109 (137)
161 2l6j_A TPR repeat-containing p 96.4 0.0056 1.9E-07 47.2 6.0 86 139-236 7-92 (111)
162 1wao_1 Serine/threonine protei 96.4 0.0078 2.7E-07 60.8 8.5 118 28-207 18-135 (477)
163 1xi4_A Clathrin heavy chain; a 96.3 0.35 1.2E-05 54.5 21.8 181 23-248 991-1221(1630)
164 1elw_A TPR1-domain of HOP; HOP 96.3 0.1 3.5E-06 39.7 13.3 98 54-211 4-101 (118)
165 2xm6_A Protein corresponding t 96.3 0.85 2.9E-05 45.3 23.2 48 29-82 200-251 (490)
166 3ma5_A Tetratricopeptide repea 96.3 0.024 8.2E-07 43.5 9.0 71 29-104 20-90 (100)
167 1hxi_A PEX5, peroxisome target 96.3 0.026 8.7E-07 45.1 9.5 86 28-165 29-114 (121)
168 3qww_A SET and MYND domain-con 96.2 0.039 1.3E-06 54.9 12.6 102 148-254 310-414 (433)
169 2kck_A TPR repeat; tetratricop 96.2 0.031 1.1E-06 42.4 9.5 89 28-167 18-108 (112)
170 3urz_A Uncharacterized protein 96.2 0.082 2.8E-06 46.3 13.5 94 140-251 8-117 (208)
171 3qwp_A SET and MYND domain-con 96.2 0.13 4.3E-06 51.1 15.9 108 143-255 294-404 (429)
172 4b4t_T 26S proteasome regulato 96.1 0.045 1.5E-06 50.9 11.7 151 224-378 61-223 (274)
173 1na0_A Designed protein CTPR3; 96.1 0.15 5.2E-06 39.1 13.4 99 53-211 8-106 (125)
174 2e2e_A Formate-dependent nitri 96.0 0.074 2.5E-06 44.8 11.7 97 138-252 46-145 (177)
175 2h6f_A Protein farnesyltransfe 95.9 0.12 3.9E-06 50.6 14.2 133 53-251 96-229 (382)
176 2dba_A Smooth muscle cell asso 95.9 0.11 3.8E-06 41.7 12.1 103 53-212 27-129 (148)
177 1ihg_A Cyclophilin 40; ppiase 95.9 0.069 2.4E-06 51.9 12.4 107 139-251 226-336 (370)
178 2if4_A ATFKBP42; FKBP-like, al 95.8 0.027 9.4E-07 53.9 9.1 150 53-251 178-328 (338)
179 2hr2_A Hypothetical protein; a 95.8 0.11 3.6E-06 44.2 11.6 104 28-168 23-134 (159)
180 2c2l_A CHIP, carboxy terminus 95.8 0.067 2.3E-06 49.5 11.5 96 139-252 7-102 (281)
181 2kc7_A BFR218_protein; tetratr 95.7 0.067 2.3E-06 40.2 9.2 73 29-106 13-86 (99)
182 2hr2_A Hypothetical protein; a 95.5 0.29 9.8E-06 41.5 13.2 109 140-251 15-131 (159)
183 3ma5_A Tetratricopeptide repea 95.5 0.1 3.4E-06 39.8 9.5 64 139-214 10-73 (100)
184 2kat_A Uncharacterized protein 95.3 0.1 3.5E-06 40.5 9.3 52 29-84 32-83 (115)
185 4f3v_A ESX-1 secretion system 95.3 0.033 1.1E-06 52.0 7.1 97 137-250 103-199 (282)
186 1kt0_A FKBP51, 51 kDa FK506-bi 95.3 0.14 4.6E-06 51.2 12.2 108 138-251 270-380 (457)
187 3qou_A Protein YBBN; thioredox 95.1 0.75 2.6E-05 42.4 16.0 132 54-251 117-248 (287)
188 2ooe_A Cleavage stimulation fa 95.1 0.8 2.7E-05 46.1 17.5 24 141-164 326-349 (530)
189 3k9i_A BH0479 protein; putativ 95.1 0.11 3.7E-06 40.7 8.7 89 149-252 3-91 (117)
190 3mv2_B Coatomer subunit epsilo 95.0 0.18 6.2E-06 47.7 11.4 103 140-252 104-208 (310)
191 2c2l_A CHIP, carboxy terminus 94.9 0.33 1.1E-05 44.7 12.9 100 54-213 4-103 (281)
192 3rjv_A Putative SEL1 repeat pr 94.4 2.1 7E-05 37.2 16.3 151 29-211 31-197 (212)
193 1xi4_A Clathrin heavy chain; a 94.3 2.9 9.8E-05 47.4 20.2 160 30-210 1119-1308(1630)
194 2kc7_A BFR218_protein; tetratr 94.2 0.36 1.2E-05 36.0 9.6 61 140-212 4-65 (99)
195 2kat_A Uncharacterized protein 94.2 0.41 1.4E-05 36.9 10.2 63 138-212 21-83 (115)
196 2l6j_A TPR repeat-containing p 94.0 0.1 3.6E-06 39.6 6.2 53 28-84 16-68 (111)
197 1rz4_A Eukaryotic translation 93.9 0.14 4.9E-06 46.0 7.6 94 291-398 95-189 (226)
198 2v5f_A Prolyl 4-hydroxylase su 93.8 0.38 1.3E-05 37.1 9.0 69 139-212 8-76 (104)
199 4b4t_O 26S proteasome regulato 93.6 0.29 1E-05 47.9 9.8 135 60-203 45-190 (393)
200 1wao_1 Serine/threonine protei 93.6 0.14 4.9E-06 51.4 7.8 94 140-251 10-103 (477)
201 2r5s_A Uncharacterized protein 93.4 1.9 6.6E-05 35.9 13.7 164 56-250 8-172 (176)
202 1na3_A Designed protein CTPR2; 93.4 0.24 8.3E-06 36.0 7.0 52 29-84 22-73 (91)
203 1na3_A Designed protein CTPR2; 93.3 0.52 1.8E-05 34.1 8.8 62 138-211 11-72 (91)
204 4g26_A Pentatricopeptide repea 93.2 2.8 9.5E-05 42.2 16.8 173 55-248 27-201 (501)
205 3e4b_A ALGK; tetratricopeptide 93.0 7 0.00024 38.4 19.2 174 31-250 160-350 (452)
206 2if4_A ATFKBP42; FKBP-like, al 93.0 0.27 9.4E-06 46.7 8.4 106 139-250 182-292 (338)
207 2v5f_A Prolyl 4-hydroxylase su 92.6 0.15 5.1E-06 39.5 5.0 72 13-84 1-76 (104)
208 3bee_A Putative YFRE protein; 92.6 0.3 1E-05 37.1 6.6 49 32-84 25-73 (93)
209 3txn_A 26S proteasome regulato 92.5 8.2 0.00028 37.5 21.9 131 30-163 73-208 (394)
210 3lpz_A GET4 (YOR164C homolog); 92.0 8.5 0.00029 36.5 23.7 48 289-336 239-287 (336)
211 3e4b_A ALGK; tetratricopeptide 92.0 6.7 0.00023 38.5 17.5 92 138-250 178-279 (452)
212 1qgp_A Protein (double strande 91.8 0.45 1.5E-05 34.9 6.4 49 344-392 17-68 (77)
213 1sfx_A Conserved hypothetical 90.5 1.8 6.1E-05 33.0 9.3 72 353-429 32-105 (109)
214 4b4t_R RPN7, 26S proteasome re 90.0 6.9 0.00024 38.4 15.2 108 54-166 131-238 (429)
215 1xn7_A Hypothetical protein YH 89.9 0.41 1.4E-05 35.2 4.6 43 344-386 5-47 (78)
216 4g26_A Pentatricopeptide repea 89.6 9 0.00031 38.4 16.0 156 28-209 38-202 (501)
217 1qbj_A Protein (double-strande 89.6 0.48 1.7E-05 35.1 4.8 56 345-401 14-72 (81)
218 2k02_A Ferrous iron transport 89.1 0.57 2E-05 35.2 4.9 44 345-388 6-49 (87)
219 1pc2_A Mitochondria fission pr 88.6 0.85 2.9E-05 38.2 6.2 51 31-84 50-101 (152)
220 1ub9_A Hypothetical protein PH 87.7 3.3 0.00011 31.0 8.9 68 353-425 28-98 (100)
221 1zu2_A Mitochondrial import re 87.0 0.84 2.9E-05 38.5 5.3 48 32-83 62-120 (158)
222 2jt1_A PEFI protein; solution 86.6 0.9 3.1E-05 33.3 4.6 33 354-386 23-55 (77)
223 4f3v_A ESX-1 secretion system 86.5 9.5 0.00033 35.2 12.7 100 138-251 137-237 (282)
224 2heo_A Z-DNA binding protein 1 86.5 1 3.5E-05 31.8 4.8 34 354-387 24-57 (67)
225 4b4t_P 26S proteasome regulato 86.4 8.6 0.0003 37.9 13.2 111 53-165 136-247 (445)
226 2v79_A DNA replication protein 86.1 1.4 4.7E-05 36.1 6.0 61 353-416 49-111 (135)
227 3ffl_A Anaphase-promoting comp 85.8 10 0.00035 32.0 11.4 69 143-214 27-95 (167)
228 1b89_A Protein (clathrin heavy 85.2 2.3 7.8E-05 42.2 8.1 174 56-248 124-308 (449)
229 3r0a_A Putative transcriptiona 84.3 2.6 8.8E-05 33.6 6.8 70 356-425 43-118 (123)
230 2d1h_A ST1889, 109AA long hypo 83.4 5.7 0.00019 30.0 8.3 47 347-393 28-74 (109)
231 1jgs_A Multiple antibiotic res 83.0 6.5 0.00022 31.2 8.9 43 353-395 46-88 (138)
232 1b89_A Protein (clathrin heavy 82.9 0.39 1.3E-05 47.6 1.5 40 31-79 18-57 (449)
233 2hzt_A Putative HTH-type trans 82.4 6.8 0.00023 30.1 8.4 65 353-417 25-94 (107)
234 2nnn_A Probable transcriptiona 82.3 7.9 0.00027 30.7 9.2 43 353-395 50-92 (140)
235 2fbi_A Probable transcriptiona 82.1 7.3 0.00025 31.0 8.9 43 353-395 48-90 (142)
236 2gxg_A 146AA long hypothetical 81.8 8.5 0.00029 30.8 9.3 48 353-400 48-98 (146)
237 2htj_A P fimbrial regulatory p 81.5 3.5 0.00012 30.0 6.1 34 354-387 13-46 (81)
238 3bpv_A Transcriptional regulat 81.4 7.6 0.00026 30.8 8.7 44 353-396 41-84 (138)
239 1klx_A Cysteine rich protein B 81.2 12 0.00042 29.8 10.0 87 142-250 31-125 (138)
240 3k0l_A Repressor protein; heli 80.8 7.9 0.00027 31.9 8.9 48 353-400 58-108 (162)
241 3oop_A LIN2960 protein; protei 80.8 6.1 0.00021 31.7 8.0 49 353-401 49-100 (143)
242 2fbh_A Transcriptional regulat 80.7 7.8 0.00027 31.0 8.7 51 351-401 48-101 (146)
243 2rdp_A Putative transcriptiona 80.7 9.3 0.00032 30.8 9.2 43 353-395 54-96 (150)
244 4e6h_A MRNA 3'-END-processing 80.4 59 0.002 33.9 20.2 194 31-250 358-569 (679)
245 3eco_A MEPR; mutlidrug efflux 80.2 8.9 0.0003 30.5 8.8 47 354-400 46-95 (139)
246 2a61_A Transcriptional regulat 80.2 9.3 0.00032 30.5 9.0 43 353-395 45-87 (145)
247 4fhn_B Nucleoporin NUP120; pro 80.1 78 0.0027 35.1 20.5 204 58-274 846-1077(1139)
248 3ech_A MEXR, multidrug resista 80.1 4.6 0.00016 32.4 7.0 44 353-396 49-92 (142)
249 1lj9_A Transcriptional regulat 80.1 8.4 0.00029 30.8 8.7 47 353-399 41-90 (144)
250 1klx_A Cysteine rich protein B 80.1 15 0.0005 29.3 10.1 112 30-165 9-126 (138)
251 3tgn_A ADC operon repressor AD 80.1 6.6 0.00023 31.5 8.0 48 347-395 44-91 (146)
252 3f6o_A Probable transcriptiona 80.0 7.1 0.00024 30.6 7.9 63 354-421 30-92 (118)
253 3ffl_A Anaphase-promoting comp 79.6 8.5 0.00029 32.5 8.4 68 185-252 23-93 (167)
254 2oqg_A Possible transcriptiona 79.5 14 0.00047 28.3 9.4 37 354-390 33-69 (114)
255 3cuo_A Uncharacterized HTH-typ 79.4 11 0.00038 27.9 8.6 50 349-398 32-81 (99)
256 2kko_A Possible transcriptiona 79.3 5.7 0.0002 30.7 7.0 37 354-390 37-73 (108)
257 3t5v_A Nuclear mRNA export pro 79.1 5.3 0.00018 37.6 7.8 83 291-378 145-248 (316)
258 1nzn_A CGI-135 protein, fissio 78.7 11 0.00037 30.3 8.5 68 15-84 33-104 (126)
259 3bja_A Transcriptional regulat 78.7 7.1 0.00024 30.9 7.7 42 353-394 45-86 (139)
260 1s3j_A YUSO protein; structura 78.6 9.3 0.00032 31.0 8.6 51 350-400 46-99 (155)
261 3jth_A Transcription activator 78.3 15 0.00053 27.3 9.1 38 354-391 35-72 (98)
262 2eth_A Transcriptional regulat 78.0 12 0.00041 30.4 9.1 48 353-400 56-106 (154)
263 1zu2_A Mitochondrial import re 77.9 12 0.00039 31.4 8.8 84 149-250 15-119 (158)
264 3bj6_A Transcriptional regulat 77.8 8.1 0.00028 31.2 7.9 52 349-400 48-102 (152)
265 2hr3_A Probable transcriptiona 77.8 12 0.0004 30.0 8.9 48 353-400 48-98 (147)
266 3nqo_A MARR-family transcripti 77.5 11 0.00038 32.1 9.0 44 352-395 54-97 (189)
267 3s2w_A Transcriptional regulat 77.2 9.3 0.00032 31.3 8.2 48 353-400 62-112 (159)
268 2nyx_A Probable transcriptiona 76.9 11 0.00038 31.2 8.7 48 353-400 57-107 (168)
269 1tbx_A ORF F-93, hypothetical 76.7 11 0.00039 28.1 7.9 49 353-401 20-72 (99)
270 3cdh_A Transcriptional regulat 76.6 11 0.00037 30.6 8.4 54 347-400 49-105 (155)
271 3cjn_A Transcriptional regulat 76.0 12 0.0004 30.7 8.5 48 353-400 64-114 (162)
272 2cfx_A HTH-type transcriptiona 75.6 4.6 0.00016 33.0 5.7 47 346-392 10-59 (144)
273 2cg4_A Regulatory protein ASNC 75.6 4.3 0.00015 33.4 5.6 48 346-393 13-63 (152)
274 1r7j_A Conserved hypothetical 75.5 15 0.0005 27.8 8.1 66 356-427 21-89 (95)
275 3g3z_A NMB1585, transcriptiona 75.3 6.9 0.00024 31.5 6.7 49 353-401 43-94 (145)
276 1xd7_A YWNA; structural genomi 75.0 7.7 0.00026 31.8 6.9 55 344-400 13-67 (145)
277 2p5v_A Transcriptional regulat 74.7 4.7 0.00016 33.6 5.6 47 346-392 15-64 (162)
278 3df8_A Possible HXLR family tr 74.6 9.7 0.00033 29.5 7.1 74 345-419 32-107 (111)
279 2fa5_A Transcriptional regulat 74.5 9.8 0.00033 31.2 7.6 47 353-399 61-110 (162)
280 3e6m_A MARR family transcripti 74.1 11 0.00036 31.1 7.7 49 353-401 65-116 (161)
281 3nrv_A Putative transcriptiona 74.0 8.9 0.00031 30.8 7.1 49 352-400 51-102 (148)
282 1q1h_A TFE, transcription fact 73.8 1.8 6E-05 33.6 2.5 50 348-397 26-77 (110)
283 2fsw_A PG_0823 protein; alpha- 73.8 12 0.0004 28.7 7.3 65 353-417 36-105 (107)
284 3bdd_A Regulatory protein MARR 73.4 6.2 0.00021 31.4 5.9 47 353-399 43-92 (142)
285 2dbb_A Putative HTH-type trans 73.0 5.2 0.00018 32.8 5.4 47 346-392 14-63 (151)
286 2qww_A Transcriptional regulat 72.9 7.9 0.00027 31.4 6.6 48 353-400 53-105 (154)
287 3bro_A Transcriptional regulat 72.8 13 0.00043 29.5 7.7 46 355-400 50-98 (141)
288 1ku9_A Hypothetical protein MJ 72.7 13 0.00043 29.8 7.8 42 354-395 40-81 (152)
289 3o48_A Mitochondria fission 1 72.3 6.9 0.00024 31.8 5.7 66 15-83 38-107 (134)
290 3deu_A Transcriptional regulat 72.3 18 0.00063 29.9 8.9 49 353-401 66-117 (166)
291 3i4p_A Transcriptional regulat 72.1 4.6 0.00016 33.8 4.9 49 345-393 7-58 (162)
292 2w25_A Probable transcriptiona 71.3 6.7 0.00023 32.1 5.8 46 347-392 13-61 (150)
293 1oyi_A Double-stranded RNA-bin 71.0 4.9 0.00017 29.7 4.2 39 348-387 24-62 (82)
294 1z7u_A Hypothetical protein EF 70.9 18 0.00062 27.9 7.9 66 354-419 34-104 (112)
295 3fm5_A Transcriptional regulat 70.5 16 0.00053 29.5 7.9 42 354-395 53-94 (150)
296 1yyv_A Putative transcriptiona 70.0 30 0.001 27.6 9.3 66 353-418 46-116 (131)
297 2ia0_A Putative HTH-type trans 70.0 6.9 0.00024 33.1 5.6 46 347-392 23-71 (171)
298 1y8m_A FIS1; mitochondria, unk 69.8 7.7 0.00026 31.9 5.5 66 15-83 37-106 (144)
299 3bee_A Putative YFRE protein; 69.8 18 0.00061 26.9 7.4 63 183-251 7-72 (93)
300 3t8r_A Staphylococcus aureus C 69.8 17 0.00057 29.7 7.8 53 345-397 16-70 (143)
301 3lwf_A LIN1550 protein, putati 69.7 26 0.00087 29.2 9.0 48 354-401 43-90 (159)
302 1pc2_A Mitochondria fission pr 69.7 46 0.0016 27.5 10.4 65 137-211 33-100 (152)
303 2y75_A HTH-type transcriptiona 69.4 13 0.00044 29.5 6.9 46 354-399 25-70 (129)
304 3kp7_A Transcriptional regulat 69.4 12 0.00041 30.2 6.9 53 347-400 44-101 (151)
305 2e1c_A Putative HTH-type trans 68.6 5.1 0.00017 34.0 4.5 47 346-392 32-81 (171)
306 3f3x_A Transcriptional regulat 68.4 26 0.00089 27.8 8.8 40 357-396 52-91 (144)
307 2pn6_A ST1022, 150AA long hypo 67.6 6.5 0.00022 32.1 4.9 47 346-392 8-57 (150)
308 3boq_A Transcriptional regulat 67.5 13 0.00043 30.4 6.7 49 352-400 59-110 (160)
309 2cyy_A Putative HTH-type trans 66.9 5.5 0.00019 32.7 4.3 47 346-392 12-61 (151)
310 2wpv_A GET4, UPF0363 protein Y 66.7 83 0.0028 29.3 24.1 34 292-325 242-275 (312)
311 4aik_A Transcriptional regulat 66.6 41 0.0014 27.2 9.7 48 354-401 45-95 (151)
312 1ylf_A RRF2 family protein; st 65.3 17 0.00059 29.7 7.0 46 354-400 29-74 (149)
313 4a5n_A Uncharacterized HTH-typ 64.1 31 0.0011 27.7 8.2 67 353-419 37-108 (131)
314 1i1g_A Transcriptional regulat 63.8 8.1 0.00028 31.1 4.6 41 347-387 10-50 (141)
315 3jw4_A Transcriptional regulat 63.6 11 0.00038 30.3 5.5 43 354-396 56-98 (148)
316 3tqn_A Transcriptional regulat 62.5 17 0.00058 28.2 6.1 63 335-399 12-75 (113)
317 3u2r_A Regulatory protein MARR 62.4 20 0.00068 29.5 7.1 42 354-395 61-102 (168)
318 2qvo_A Uncharacterized protein 62.0 12 0.00042 27.8 5.1 47 355-401 30-76 (95)
319 2frh_A SARA, staphylococcal ac 61.9 23 0.00079 27.8 7.0 48 354-401 52-102 (127)
320 2bv6_A MGRA, HTH-type transcri 61.1 19 0.00064 28.6 6.5 48 353-400 49-99 (142)
321 2pg4_A Uncharacterized protein 61.0 20 0.00068 26.6 6.1 46 355-400 30-77 (95)
322 2qlz_A Transcription factor PF 60.6 40 0.0014 30.0 9.0 45 353-400 176-220 (232)
323 2f2e_A PA1607; transcription f 60.3 24 0.00083 28.7 7.0 65 353-417 35-102 (146)
324 1zbp_A Hypothetical protein VP 60.1 53 0.0018 29.9 9.7 54 27-84 8-61 (273)
325 3hsr_A HTH-type transcriptiona 59.8 29 0.00099 27.5 7.4 54 347-400 42-98 (140)
326 1sfu_A 34L protein; protein/Z- 59.8 22 0.00074 25.7 5.6 40 349-388 23-62 (75)
327 3pqk_A Biofilm growth-associat 58.7 54 0.0018 24.4 9.3 47 354-400 35-81 (102)
328 3ri2_A Transcriptional regulat 57.5 68 0.0023 25.2 10.5 90 330-426 10-108 (123)
329 1y0u_A Arsenical resistance op 57.5 24 0.00084 26.1 6.1 44 354-401 42-85 (96)
330 3neu_A LIN1836 protein; struct 56.9 21 0.00073 28.2 5.9 63 335-399 16-79 (125)
331 1xmk_A Double-stranded RNA-spe 56.6 8.9 0.00031 28.0 3.2 40 347-386 17-57 (79)
332 3by6_A Predicted transcription 56.5 20 0.00067 28.5 5.6 63 335-399 14-77 (126)
333 1on2_A Transcriptional regulat 56.5 43 0.0015 26.6 7.9 47 352-401 19-65 (142)
334 3k69_A Putative transcription 56.2 31 0.0011 28.7 7.1 44 353-396 26-69 (162)
335 2xvc_A ESCRT-III, SSO0910; cel 55.9 13 0.00045 25.2 3.6 41 346-386 15-56 (59)
336 1u2w_A CADC repressor, cadmium 55.8 70 0.0024 24.8 9.2 37 353-389 54-90 (122)
337 3b73_A PHIH1 repressor-like pr 54.0 19 0.00066 28.1 5.0 52 346-400 18-71 (111)
338 1r1u_A CZRA, repressor protein 53.6 31 0.0011 26.1 6.3 37 354-390 38-74 (106)
339 2b0l_A GTP-sensing transcripti 53.5 17 0.00059 27.7 4.6 51 348-398 35-86 (102)
340 2vn2_A DNAD, chromosome replic 53.5 12 0.00041 29.9 3.9 58 355-415 51-110 (128)
341 2lnb_A Z-DNA-binding protein 1 53.3 27 0.00092 25.3 5.1 37 349-385 28-64 (80)
342 4h7y_A Dual specificity protei 53.3 43 0.0015 27.9 7.1 65 133-210 58-122 (161)
343 2x4h_A Hypothetical protein SS 52.7 63 0.0022 25.4 8.3 51 347-401 23-73 (139)
344 4ham_A LMO2241 protein; struct 52.6 85 0.0029 24.8 10.8 63 335-399 17-80 (134)
345 4hbl_A Transcriptional regulat 52.5 14 0.00048 29.8 4.3 48 353-400 53-103 (149)
346 1v4r_A Transcriptional repress 52.2 8.3 0.00028 29.3 2.6 62 336-399 15-77 (102)
347 1uly_A Hypothetical protein PH 52.0 23 0.00077 30.5 5.7 35 354-388 32-66 (192)
348 2ek5_A Predicted transcription 51.3 29 0.00098 27.7 5.9 62 336-399 8-70 (129)
349 2pex_A Transcriptional regulat 51.2 20 0.00068 28.9 5.0 48 353-400 59-109 (153)
350 2k9l_A RNA polymerase sigma fa 49.8 13 0.00045 26.8 3.2 26 353-378 46-71 (76)
351 3f6v_A Possible transcriptiona 48.5 29 0.001 28.5 5.6 50 341-392 59-108 (151)
352 2hoe_A N-acetylglucosamine kin 47.6 11 0.00039 36.1 3.4 53 333-386 9-64 (380)
353 1ucr_A Protein DSVD; dissimila 47.4 19 0.00064 26.0 3.5 35 352-386 18-53 (78)
354 1z91_A Organic hydroperoxide r 47.1 18 0.00062 28.8 4.1 47 354-400 53-102 (147)
355 3mkq_A Coatomer beta'-subunit; 46.9 1.2E+02 0.0042 31.2 11.6 26 140-165 685-710 (814)
356 3e6c_C CPRK, cyclic nucleotide 46.7 11 0.00036 33.5 2.8 69 354-426 176-248 (250)
357 1r1t_A Transcriptional repress 45.7 1E+02 0.0036 23.9 8.5 37 354-390 58-94 (122)
358 2fbk_A Transcriptional regulat 45.4 25 0.00086 29.4 4.9 46 355-400 86-134 (181)
359 2ff4_A Probable regulatory pro 45.2 86 0.0029 29.9 9.3 67 134-212 169-235 (388)
360 2lkp_A Transcriptional regulat 44.6 68 0.0023 24.5 7.1 46 354-401 44-89 (119)
361 2p5k_A Arginine repressor; DNA 43.8 64 0.0022 21.4 6.0 50 343-397 7-61 (64)
362 2jsc_A Transcriptional regulat 42.8 61 0.0021 25.0 6.5 36 355-390 34-69 (118)
363 4h7y_A Dual specificity protei 41.9 1.5E+02 0.0051 24.6 10.6 51 112-168 76-126 (161)
364 2ff4_A Probable regulatory pro 41.2 67 0.0023 30.7 7.8 53 28-84 183-235 (388)
365 2jpc_A SSRB; DNA binding prote 40.4 39 0.0013 22.3 4.4 29 353-381 11-39 (61)
366 3dv8_A Transcriptional regulat 39.8 38 0.0013 28.8 5.3 43 355-401 169-211 (220)
367 2fxa_A Protease production reg 39.6 31 0.0011 29.8 4.6 47 354-400 61-110 (207)
368 2vkj_A TM1634; membrane protei 39.6 70 0.0024 23.8 5.6 47 138-191 55-101 (106)
369 1z6r_A MLC protein; transcript 39.3 37 0.0013 32.6 5.7 41 346-386 21-61 (406)
370 3l7w_A Putative uncharacterize 39.3 72 0.0025 24.2 6.3 61 360-425 31-95 (108)
371 2wte_A CSA3; antiviral protein 39.2 60 0.0021 29.0 6.6 67 353-421 164-231 (244)
372 3esl_A Checkpoint serine/threo 38.0 2E+02 0.0067 24.9 11.8 70 130-210 74-143 (202)
373 3iuo_A ATP-dependent DNA helic 37.8 26 0.00091 27.7 3.5 33 354-386 31-64 (122)
374 2pi2_A Replication protein A 3 37.4 7 0.00024 35.8 0.0 38 354-391 223-261 (270)
375 4b8x_A SCO5413, possible MARR- 37.3 60 0.002 26.0 5.8 50 351-400 47-99 (147)
376 4fx0_A Probable transcriptiona 37.3 1E+02 0.0036 24.6 7.4 42 354-396 51-92 (148)
377 2p7v_B Sigma-70, RNA polymeras 37.1 31 0.0011 23.6 3.5 29 353-381 23-51 (68)
378 3c57_A Two component transcrip 36.9 44 0.0015 24.8 4.5 30 353-382 40-69 (95)
379 1j5y_A Transcriptional regulat 36.7 58 0.002 27.6 5.9 47 341-387 21-69 (187)
380 1z05_A Transcriptional regulat 36.7 44 0.0015 32.5 5.7 41 346-386 44-84 (429)
381 2gau_A Transcriptional regulat 36.6 71 0.0024 27.3 6.6 44 354-401 179-222 (232)
382 2fu4_A Ferric uptake regulatio 36.4 91 0.0031 22.0 6.2 43 345-387 21-70 (83)
383 3f8m_A GNTR-family protein tra 35.9 93 0.0032 27.6 7.4 61 335-400 17-78 (248)
384 3hrs_A Metalloregulator SCAR; 35.7 1.2E+02 0.0043 26.1 8.0 53 346-401 11-63 (214)
385 3c7j_A Transcriptional regulat 35.3 58 0.002 28.7 5.9 63 333-397 27-89 (237)
386 2zcw_A TTHA1359, transcription 34.6 57 0.002 27.3 5.6 43 355-401 146-188 (202)
387 2rnj_A Response regulator prot 34.5 51 0.0018 24.1 4.5 30 353-382 42-71 (91)
388 1je8_A Nitrate/nitrite respons 34.3 57 0.0019 23.4 4.7 30 353-382 34-63 (82)
389 2h09_A Transcriptional regulat 34.1 1.2E+02 0.0042 24.2 7.3 45 354-401 53-97 (155)
390 3ic7_A Putative transcriptiona 34.0 26 0.00088 27.8 2.9 62 336-399 15-77 (126)
391 4ev0_A Transcription regulator 33.9 52 0.0018 27.8 5.2 44 354-401 162-205 (216)
392 3u64_A Protein TP_0956; tetrat 33.5 2.5E+02 0.0085 25.9 9.8 86 152-252 179-270 (301)
393 1fse_A GERE; helix-turn-helix 33.5 62 0.0021 22.1 4.7 29 353-381 24-52 (74)
394 2oz6_A Virulence factor regula 33.4 48 0.0017 27.8 4.9 42 355-400 164-205 (207)
395 2pft_A Exocytosis protein; hel 33.3 1E+02 0.0034 31.3 7.9 81 296-380 486-567 (571)
396 3mkq_B Coatomer subunit alpha; 32.8 2.2E+02 0.0076 23.9 9.2 48 144-208 13-60 (177)
397 2zkz_A Transcriptional repress 32.8 1E+02 0.0036 22.7 6.2 36 354-390 40-75 (99)
398 3d0s_A Transcriptional regulat 32.4 73 0.0025 27.2 6.0 43 355-401 177-219 (227)
399 2wv0_A YVOA, HTH-type transcri 32.4 1.1E+02 0.0038 27.0 7.2 62 336-399 14-76 (243)
400 3t72_q RNA polymerase sigma fa 32.4 59 0.002 24.6 4.6 28 354-381 38-65 (99)
401 2qx5_A Nucleoporin NIC96; mRNA 32.4 1.4E+02 0.0046 31.0 8.7 31 134-164 534-566 (661)
402 1x3u_A Transcriptional regulat 32.2 65 0.0022 22.4 4.7 30 353-382 29-58 (79)
403 3dss_A Geranylgeranyl transfer 31.7 1.3E+02 0.0043 28.2 7.8 63 32-97 254-316 (331)
404 3dkw_A DNR protein; CRP-FNR, H 31.4 53 0.0018 28.0 4.8 45 354-402 177-221 (227)
405 3kp1_E D-ornithine aminomutase 31.3 95 0.0032 24.4 5.5 60 325-385 17-77 (121)
406 3ryp_A Catabolite gene activat 30.9 55 0.0019 27.5 4.8 42 355-400 167-208 (210)
407 2cru_A Programmed cell death p 30.8 21 0.00073 28.2 1.8 51 341-391 38-88 (118)
408 3hug_A RNA polymerase sigma fa 30.8 68 0.0023 23.4 4.7 30 352-381 50-79 (92)
409 3sxy_A Transcriptional regulat 30.7 82 0.0028 27.1 6.0 63 335-399 15-77 (218)
410 3mkq_A Coatomer beta'-subunit; 30.5 1.2E+02 0.0041 31.3 8.3 83 144-247 660-748 (814)
411 2vxz_A Pyrsv_GP04; viral prote 30.3 75 0.0026 26.1 5.0 42 344-386 14-55 (165)
412 4a0z_A Transcription factor FA 30.0 66 0.0022 27.5 5.0 46 338-383 9-54 (190)
413 3b02_A Transcriptional regulat 30.0 77 0.0026 26.3 5.6 43 355-401 139-181 (195)
414 3ihu_A Transcriptional regulat 29.7 1.2E+02 0.0042 26.0 7.0 63 335-399 19-81 (222)
415 3la7_A Global nitrogen regulat 29.6 75 0.0026 27.6 5.6 46 354-403 192-237 (243)
416 2k9m_A RNA polymerase sigma fa 29.5 40 0.0014 27.0 3.3 26 353-378 37-62 (130)
417 1ku3_A Sigma factor SIGA; heli 29.1 44 0.0015 23.2 3.2 28 354-381 29-56 (73)
418 2gqq_A Leucine-responsive regu 28.6 20 0.00067 29.7 1.4 39 349-387 21-59 (163)
419 1okr_A MECI, methicillin resis 28.4 1.9E+02 0.0065 21.8 8.7 38 353-390 22-63 (123)
420 3ly7_A Transcriptional activat 28.4 1.8E+02 0.0062 27.7 8.3 61 183-250 278-338 (372)
421 1tc3_C Protein (TC3 transposas 27.8 38 0.0013 20.8 2.5 27 354-380 20-46 (51)
422 3ubw_A 14-3-3E, 14-3-3 protein 27.8 3.4E+02 0.011 24.4 14.6 54 8-61 20-80 (261)
423 1eij_A Hypothetical protein MT 27.4 30 0.001 25.3 1.9 22 370-391 37-58 (80)
424 1bja_A Transcription regulator 27.4 1.2E+02 0.0042 22.7 5.5 65 345-414 20-85 (95)
425 1ldd_A APC2WHB, anaphase promo 27.1 1.1E+02 0.0036 21.9 4.8 38 349-386 16-64 (74)
426 1zyb_A Transcription regulator 27.0 75 0.0026 27.3 5.1 45 354-402 185-229 (232)
427 2o8x_A Probable RNA polymerase 27.0 53 0.0018 22.2 3.3 29 353-381 29-57 (70)
428 3edp_A LIN2111 protein; APC883 26.9 96 0.0033 27.3 5.8 63 336-400 13-76 (236)
429 3fx3_A Cyclic nucleotide-bindi 26.8 99 0.0034 26.5 5.8 42 355-401 178-219 (237)
430 2dk5_A DNA-directed RNA polyme 26.1 1.2E+02 0.004 22.5 5.2 35 354-388 35-69 (91)
431 2l0k_A Stage III sporulation p 26.0 58 0.002 24.4 3.5 33 344-377 10-42 (93)
432 3bwg_A Uncharacterized HTH-typ 25.9 1.5E+02 0.0053 25.9 7.0 61 337-399 10-71 (239)
433 2p4w_A Transcriptional regulat 25.6 2.4E+02 0.0083 24.0 8.0 38 353-390 26-63 (202)
434 3ulq_B Transcriptional regulat 25.6 91 0.0031 22.8 4.5 28 354-381 43-70 (90)
435 2fh0_A Hypothetical 16.0 kDa p 25.4 32 0.0011 25.1 1.8 22 370-391 35-56 (81)
436 2wvi_A Mitotic checkpoint seri 25.2 2.9E+02 0.01 22.9 9.6 79 116-210 43-124 (164)
437 3pvv_A Chromosomal replication 25.2 1.5E+02 0.0052 22.4 5.8 43 300-343 55-97 (101)
438 4b4t_S RPN3, 26S proteasome re 25.0 1.3E+02 0.0046 30.1 6.8 66 137-209 232-297 (523)
439 1tty_A Sigma-A, RNA polymerase 24.8 57 0.002 23.6 3.3 28 354-381 37-64 (87)
440 3dra_A Protein farnesyltransfe 24.8 4E+02 0.014 24.2 14.0 129 29-164 123-286 (306)
441 4e6h_A MRNA 3'-END-processing 24.7 5.8E+02 0.02 26.2 20.6 96 138-250 436-532 (679)
442 2pjp_A Selenocysteine-specific 24.7 76 0.0026 24.7 4.2 33 355-387 20-52 (121)
443 3eet_A Putative GNTR-family tr 24.6 1.2E+02 0.0043 27.2 6.2 63 335-399 32-95 (272)
444 3kae_A CDC27, possible protein 24.5 2.5E+02 0.0085 23.9 7.3 56 28-83 74-143 (242)
445 3i71_A Ethanolamine utilizatio 24.0 1.2E+02 0.0042 20.5 4.2 41 347-387 9-50 (68)
446 4fhn_B Nucleoporin NUP120; pro 23.8 3.3E+02 0.011 30.0 10.6 124 139-269 845-979 (1139)
447 3u5c_Z RP45, S31, YS23, 40S ri 23.7 1.4E+02 0.0047 23.1 5.2 50 350-399 54-103 (108)
448 2b1e_A Exocyst complex compone 23.7 1.6E+02 0.0054 29.8 7.3 79 297-380 485-563 (564)
449 2hs5_A Putative transcriptiona 23.4 1.3E+02 0.0044 26.4 6.0 62 335-398 31-92 (239)
450 2l01_A Uncharacterized protein 23.3 2.1E+02 0.0072 20.6 5.8 48 351-400 20-68 (77)
451 3mkq_B Coatomer subunit alpha; 23.2 3.3E+02 0.011 22.8 10.0 49 140-208 38-86 (177)
452 3e97_A Transcriptional regulat 23.0 66 0.0022 27.5 3.9 44 354-401 174-217 (231)
453 2da7_A Zinc finger homeobox pr 22.6 61 0.0021 23.0 2.7 28 354-381 31-58 (71)
454 3u64_A Protein TP_0956; tetrat 22.3 3.5E+02 0.012 24.9 8.7 67 137-214 200-272 (301)
455 4esf_A PADR-like transcription 22.2 2.7E+02 0.0092 21.3 8.9 35 356-390 25-65 (117)
456 3ez9_A Para; DNA binding, wing 22.1 93 0.0032 29.7 5.1 59 332-390 15-78 (403)
457 3t5v_B Nuclear mRNA export pro 21.9 2.3E+02 0.0079 27.8 7.8 73 137-211 177-249 (455)
458 4ady_A RPN2, 26S proteasome re 21.9 7.8E+02 0.027 26.6 13.5 97 61-165 77-174 (963)
459 2fmy_A COOA, carbon monoxide o 21.9 71 0.0024 27.1 3.8 44 354-401 166-210 (220)
460 1ft9_A Carbon monoxide oxidati 21.7 67 0.0023 27.4 3.6 32 355-386 163-194 (222)
461 1hw1_A FADR, fatty acid metabo 21.6 1.4E+02 0.005 25.8 5.9 62 335-398 10-72 (239)
462 2xzm_8 RPS25E,; ribosome, tran 21.4 1.4E+02 0.0048 24.1 5.0 50 350-399 57-107 (143)
463 3iwz_A CAP-like, catabolite ac 21.3 70 0.0024 27.2 3.7 43 355-401 187-229 (230)
464 1k8b_A EIF-2-beta, probable tr 21.0 1.5E+02 0.0051 19.5 4.3 38 357-399 13-50 (52)
465 3mzy_A RNA polymerase sigma-H 21.0 1.2E+02 0.004 24.1 4.8 30 352-381 121-150 (164)
466 3k2z_A LEXA repressor; winged 20.9 1.4E+02 0.0047 25.3 5.4 33 355-387 24-56 (196)
467 2bgc_A PRFA; bacterial infecti 20.8 1.3E+02 0.0044 25.9 5.4 43 355-401 169-212 (238)
468 1bia_A BIRA bifunctional prote 20.4 1.1E+02 0.0038 28.3 5.1 43 344-386 8-50 (321)
469 3lpz_A GET4 (YOR164C homolog); 20.3 5.3E+02 0.018 24.0 12.0 26 217-246 135-160 (336)
No 1
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=100.00 E-value=9.5e-63 Score=486.97 Aligned_cols=364 Identities=24% Similarity=0.409 Sum_probs=315.1
Q ss_pred hhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHh
Q 014143 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (430)
Q Consensus 50 ~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~ 129 (430)
......++.+++++|++.|+++++.+++..+++++ +.++|++++|+|+++++.++.+|+ ....++++|+++++|+
T Consensus 15 ~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~kak~~k~v~~l~~~~~~~~~----~~~~~~~~~~~~~~~a 89 (394)
T 3txn_A 15 IRIKEQGILQQGELYKQEGKAKELADLIKVTRPFL-SSISKAKAAKLVRSLVDMFLDMDA----GTGIEVQLCKDCIEWA 89 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGG-GGSCHHHHHHHHHHHHHHHTTSCC----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHHH
Confidence 34467899999999999999999999999999999 999999999999999999999886 2478899999999999
Q ss_pred hhh-hhHHHH--hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 014143 130 KNE-RLWFKT--NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQ 206 (430)
Q Consensus 130 ~~~-kl~~r~--~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~ 206 (430)
.++ |.|+|. ..+||.+|++.|+|.+|.+++.+++.+|... || +.+++|+++.++++|+.++|+++++++|+
T Consensus 90 ~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~---dd---~~~llev~lle~~~~~~~~n~~k~k~~l~ 163 (394)
T 3txn_A 90 KQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL---DD---KNLLVEVQLLESKTYHALSNLPKARAALT 163 (394)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS---SC---THHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc---cc---chhHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 777 577775 5599999999999999999999999999875 34 48999999999999999999999999999
Q ss_pred HHHhhhccC-CCchhHHHHHHhhhHhhh-hhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCC--CCCCC
Q 014143 207 KALAIKSAI-PHPRIMGIIRECGGKMHM-AERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESE--VNPFD 282 (430)
Q Consensus 207 ~a~~~~~~~-~~~~~~~~~~~~~g~~~~-~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~l~~lL~~~~--~~~~~ 282 (430)
+|+++.+++ +||+++|.+++|+|++|+ .+|||++|+++|+++|++|++.+++.+.++++|++||+||+++. ++++.
T Consensus 164 ~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l 243 (394)
T 3txn_A 164 SARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLV 243 (394)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHh
Confidence 999999998 679999999999999999 99999999999999999999999999999999999999998763 33332
Q ss_pred -ccccccCCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchhhH
Q 014143 283 -GQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFI 361 (430)
Q Consensus 283 -~~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~l 361 (430)
++...+| .+|+++|+..|+.+|+++|+..|+.+++.|++.+..||+++.|+..|+++|+++||+++++||++|+|++|
T Consensus 244 ~~~~~~~~-~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~i 322 (394)
T 3txn_A 244 SGKLAITY-SGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHV 322 (394)
T ss_dssp HSHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHH
T ss_pred cccccccc-CCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHH
Confidence 3334556 57999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCCccchHHH----HHHHHHHHHHHHHHHH
Q 014143 362 SKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYT----AIDKWNSQLRSLYQTV 425 (430)
Q Consensus 362 A~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~----~l~~w~~~v~~l~~~v 425 (430)
|+.||+|++++|.+|++||.+|+|+|+|||++|+|++.++++++.+|+ .+.+|+..|++|.+..
T Consensus 323 A~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~~r~~~y~~ale~l~~ls~vVd~L~~~~ 390 (394)
T 3txn_A 323 AESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMGKVVDTLYQKA 390 (394)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC----------------------------
T ss_pred HHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988777665 5567888888887653
No 2
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-57 Score=461.42 Aligned_cols=393 Identities=13% Similarity=0.176 Sum_probs=312.6
Q ss_pred HHHHHHhhcccCCCCHHHHHHHHHHhhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHH
Q 014143 17 RVLCSILEKGLVETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (430)
Q Consensus 17 ~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~ 94 (430)
--..+++|+.+.++|+++|++.+..+.+... +|..|++|++.+++++|++.|+|+.+++++..+++. +.+.|++++
T Consensus 17 ~~~~~~~~~~l~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk--r~qlk~ai~ 94 (445)
T 4b4t_P 17 LKEEFPKIDSLAQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK--HGQLKLSIQ 94 (445)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT--TTTSHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--hhhhHHHHH
Confidence 4467899999999999999999998876543 678999999999999999999999999999888875 567999999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHH-----HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCC
Q 014143 95 KCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF-----KTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE 169 (430)
Q Consensus 95 k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~-----r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~ 169 (430)
++|+.+++++++.|+.+.+.. ..+.+++.+++++|+|+ |++.+||++|++.|+|.+|+++|++++++|.+.
T Consensus 95 ~~V~~~~~~l~~~~~~d~~~~----~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~ 170 (445)
T 4b4t_P 95 YMIQKVMEYLKSSKSLDLNTR----ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS 170 (445)
T ss_dssp HHHHHHHHHHHHHCTTHHHHH----HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhcCCchhHHHH----HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 999999999987676333222 33344555678999887 778899999999999999999999999999864
Q ss_pred CCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc-CCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHH
Q 014143 170 DGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA-IPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (430)
Q Consensus 170 ~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea 248 (430)
++ ...++++++.++|+|+..+|+.+|+.++++++..... .++|.+++.++.|+|++++++++|.+|+++|+++
T Consensus 171 ---~~---~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 171 ---ME---MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp ---SC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ---cc---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 55 4789999999999999999999999999998654444 4568999999999999999999999999999999
Q ss_pred HHhhhhhcch-hHHHHHHHHHHHHHhhCCCCCCCCcccccc-CC--CCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhh
Q 014143 249 FKNYDEAGNQ-RRIQCLKYLVLANMLMESEVNPFDGQEAKP-YK--NDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTI 324 (430)
Q Consensus 249 ~~~~~~~~~~-~~~~~lky~~l~~lL~~~~~~~~~~~~~~~-~~--~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l 324 (430)
|++|+..+++ .+..+++++++|.+|++.+ |..+...+. +. ..++++++..|+++|.++++..|+.+++.|...+
T Consensus 245 ~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~--~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 245 YQTDAIKSDEAKWKPVLSHIVYFLVLSPYG--NLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHSSCS--STTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HhcccccCCHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 9999988877 5677899999999997432 433332222 22 2468999999999999999999999999999989
Q ss_pred cCChhH------HHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEE
Q 014143 325 MDDPFI------RNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (430)
Q Consensus 325 ~~D~~l------~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (430)
..|+++ ..|+..|++++++||++++++||++|+|++||++||+|++++|.++++||.+|+|+|+|||++|+|+|
T Consensus 323 ~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~~giV~F 402 (445)
T 4b4t_P 323 NEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNF 402 (445)
T ss_dssp TTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC
T ss_pred cccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCCCCEEEE
Confidence 888877 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccchHHHHHHHHHHHHHHHHHHHh
Q 014143 399 GDRSKGMKKYTAIDKWNSQLRSLYQTVS 426 (430)
Q Consensus 399 ~~~~~~~~~~~~l~~w~~~v~~l~~~v~ 426 (430)
.++.+ ..+.|++|+++|++|++.|+
T Consensus 403 ~~~~~---~~~~l~~W~~~i~~l~~~v~ 427 (445)
T 4b4t_P 403 EKPKN---SSQLLNEWSHNVDELLEHIE 427 (445)
T ss_dssp ----------------------------
T ss_pred CCCCC---hHHHHHHHHHHHHHHHHHHH
Confidence 88765 35889999999999999885
No 3
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-44 Score=361.83 Aligned_cols=396 Identities=19% Similarity=0.301 Sum_probs=324.6
Q ss_pred HHHhhcccC-CCCHHHHHHHHHHhhcCCcc-------------chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 014143 20 CSILEKGLV-ETDPEGALAGFAEVVAMEPE-------------KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIK 85 (430)
Q Consensus 20 ~~~~ak~~~-~~~~~~Ai~~~~~ii~~~~~-------------~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~ 85 (430)
.+.+|+.+. ++++++|++.|.++++..+. ...+..+++.+++.+|.+.|+|++++++|+.+++++
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~- 85 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM- 85 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-
Confidence 455666654 56899999999999987652 134667899999999999999999999999999998
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014143 86 SAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (430)
Q Consensus 86 ~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~ 165 (430)
+.++++..+++++.+++.+...++ +.+....++..+++......+...+.++..+||.+|.+.|+|.+|.++++++...
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPD-SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCS-CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 888999999999999999987665 3445556666665554444455577789999999999999999999999999999
Q ss_pred ccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc-hhHHHHHHhhhHhhhhhhcHHHHHHH
Q 014143 166 CQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP-RIMGIIRECGGKMHMAERQWADAATD 244 (430)
Q Consensus 166 ~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~y~~A~~~ 244 (430)
+... +| ...++++++.++++|...||+.+|+.++++++++.+.+++| ..++.++.+.|.++.++++|.+|+++
T Consensus 165 ~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~ 238 (434)
T 4b4t_Q 165 FKKL---DD---KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSY 238 (434)
T ss_dssp HTTS---SC---STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred HHhc---cc---chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 8765 34 36789999999999999999999999999999998888874 67899999999999999999999999
Q ss_pred HHHHHHhhhhhcc----hhHHHHHHHHHHHHHhhCCC---CCCCCccccccCCCCcchHHHHHHHHHHhhCCHHHHHHHH
Q 014143 245 FFEAFKNYDEAGN----QRRIQCLKYLVLANMLMESE---VNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKIL 317 (430)
Q Consensus 245 f~ea~~~~~~~~~----~~~~~~lky~~l~~lL~~~~---~~~~~~~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l 317 (430)
|.++|+++...+. +.+..+++|+++|.++.+.. .+++.++...++..+|+++++..+..+|.++++..|+..+
T Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~ 318 (434)
T 4b4t_Q 239 FFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTAL 318 (434)
T ss_dssp HHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999986554 35677889999999876532 1235555666666678899999999999999999999999
Q ss_pred HHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEE
Q 014143 318 KSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLE 397 (430)
Q Consensus 318 ~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~ 397 (430)
..+...+..|+++..|+..+.++++++++.++++||++|++++||+.|++|++++|.+|++||.+|.|+|+|||++|+|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~ 398 (434)
T 4b4t_Q 319 KQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLY 398 (434)
T ss_dssp HHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSSCCEEETTTTEEE
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHHHHHHHHHHHHhCCCcceecccccCeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCccchHHHHHHHHHHHHHHHHH
Q 014143 398 RGDRSKGMKKYTAIDKWNSQLRSLYQ 423 (430)
Q Consensus 398 ~~~~~~~~~~~~~l~~w~~~v~~l~~ 423 (430)
+.++++++..|+...+..+++.++.+
T Consensus 399 ~~~~~~~~~~~~~~l~~~~~l~~~vd 424 (434)
T 4b4t_Q 399 VYETPNQDATYDSALELVGQLNKVVD 424 (434)
T ss_dssp CC------------------------
T ss_pred eCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 99988776666655555555444443
No 4
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-43 Score=357.26 Aligned_cols=396 Identities=11% Similarity=0.120 Sum_probs=266.1
Q ss_pred hhhHHHHHHhhcccCCCCHHHHHHHHHHhhcC-CccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh-----h
Q 014143 14 TVSRVLCSILEKGLVETDPEGALAGFAEVVAM-EPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKS-----A 87 (430)
Q Consensus 14 ~~~~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~-~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~-----~ 87 (430)
+-+.++.|+..+..+-.|++-|...|.-.... .+++.+|.++.+..++ ...++.+ +|+.+.+.+.. .
T Consensus 6 e~~~e~~y~d~~~~k~P~~~la~~~f~l~~~~~~~~~~~~~~~~l~~~i---k~~~ma~----~y~~l~~~l~~~~~~~~ 78 (429)
T 4b4t_R 6 EKSQEVEYVDPTVNRVPNYEVSEKAFLLTQSKVSIEQRKEAAEFVLAKI---KEEEMAP----YYKYLCEEYLVNNGQSD 78 (429)
T ss_dssp ------------------------------------CHHHHHHHHHHHH---HHTCCHH----HHHHHHHHSCCCCSCCS
T ss_pred hhhhhccccCcccccCCChHHHHHHHHhcCCCCChhhHHHHHHHHHHHH---HHhCCHH----HHHHHHHHHhhcccchh
Confidence 44567888888888888888888887543222 1234455555554444 4444444 34444443201 1
Q ss_pred hhhhhHHHHHHHHHHHh----cCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHH
Q 014143 88 VTRNYSEKCINNIMDFV----SGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELH 163 (430)
Q Consensus 88 ~~k~~~~k~v~~il~~~----~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~ 163 (430)
..+......++...... +..+..|.....++.+.+.+.-+....+..+.+...+||++|++.||+++|.+.+.+++
T Consensus 79 ~~~~~~~~~~~~~~~~d~~~~~~~~~~n~~~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~ 158 (429)
T 4b4t_R 79 LEHDEKSDSLNEWIKFDQELYNELCKKNESKIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSL 158 (429)
T ss_dssp SCSHHHHHHHHHTTTTCCSSCTTTTCCSSCCHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHH
T ss_pred hhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23334444444333221 11222233334444444433322222334466888999999999999999999999999
Q ss_pred hhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHH
Q 014143 164 KSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAAT 243 (430)
Q Consensus 164 ~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~ 243 (430)
..|+.+ ..++++++.++|+++..+|+..++.++++++.......+|..++.++.|+|+++++.++|.+|++
T Consensus 159 ~~~~~~---------~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~ 229 (429)
T 4b4t_R 159 SKAIST---------GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAK 229 (429)
T ss_dssp HHHTCC---------CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHH
T ss_pred HhcCCh---------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 999742 45899999999999999999999999999998888888999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCC----CCCCccccccCC-CCcchHHHHHHHHHHhhCCHHHHHH-HH
Q 014143 244 DFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEV----NPFDGQEAKPYK-NDPEILAMTNLIAAYQRNEIIEFEK-IL 317 (430)
Q Consensus 244 ~f~ea~~~~~~~~~~~~~~~lky~~l~~lL~~~~~----~~~~~~~~~~~~-~~~~~~~l~~L~~af~~~dl~~f~~-~l 317 (430)
+|+++|.+|+..+...+.+++.|.+||++++.+.. ++++++....+. .+|.++++..++.+|..+++..|.+ .+
T Consensus 230 ~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l 309 (429)
T 4b4t_R 230 LLVDSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLL 309 (429)
T ss_dssp HHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999998888889999999999999876532 367777666654 3578889999999999999999765 55
Q ss_pred HHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEE
Q 014143 318 KSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLE 397 (430)
Q Consensus 318 ~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~ 397 (430)
..+...+..|++++.|++.|+++||+||+.++++||++|+|++||+.||+|++++|.+|++||.+|+|+|+||+++|+|+
T Consensus 310 ~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~ 389 (429)
T 4b4t_R 310 ETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVE 389 (429)
T ss_dssp HHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEE
T ss_pred HHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEE
Confidence 66777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCccchHHHHHHHH----HHHHHHHHHHH
Q 014143 398 RGDRSKGMKKYTAIDKW----NSQLRSLYQTV 425 (430)
Q Consensus 398 ~~~~~~~~~~~~~l~~w----~~~v~~l~~~v 425 (430)
+.+++++++.|+.+.++ .+++++|...|
T Consensus 390 ~~~~d~~~~~y~~~i~~gd~Ll~riqkl~~~i 421 (429)
T 4b4t_R 390 TNRPDNKNAQYHLLVKQGDGLLTKLQKYGAAV 421 (429)
T ss_dssp ECC-----------------------------
T ss_pred ECCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888887654 46667766555
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.9e-28 Score=242.03 Aligned_cols=282 Identities=18% Similarity=0.216 Sum_probs=204.5
Q ss_pred HHHHHHhccHHHHHHHHHHHHhhccCCCCCcc-----hhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC-
Q 014143 143 CKIWFDMGEYGRMSKILKELHKSCQREDGTDD-----QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP- 216 (430)
Q Consensus 143 a~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d-----~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~- 216 (430)
.....+..+.++|.++|.++...+...++... +......+.+.+.++++|+..+|...|+.+++++.+..+...
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 33455667899999999998766532111000 000133566777888999999999999999999987766654
Q ss_pred -CchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhh--cchhHHHHHHH-HHHHHHhhCCCCCCCCccccccC---
Q 014143 217 -HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA--GNQRRIQCLKY-LVLANMLMESEVNPFDGQEAKPY--- 289 (430)
Q Consensus 217 -~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~--~~~~~~~~lky-~~l~~lL~~~~~~~~~~~~~~~~--- 289 (430)
+|++++.++.+.|.++...++|..++.+++..+.+++.. .++.....+.| +++|+++ ++.+++|+..+.+|+
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all-~~~i~~f~eLL~~p~i~~ 241 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALL-GDKIYNFGELLHHPIMET 241 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHH-CCSSCSTHHHHHSCCTTS
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHc-CCCCCChHHHhCChHHHH
Confidence 478999999999999999999999999999999988743 33444444555 5566665 556778887766665
Q ss_pred -CCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhc--ccccccchhhHHhHhC
Q 014143 290 -KNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLI--KPYTRIRIPFISKELN 366 (430)
Q Consensus 290 -~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~--~~Y~~I~l~~lA~~l~ 366 (430)
.++|+..|+..|+.+|+.|++..|+..++.+.. ..|++..|...+.++++..++..++ ++|++|+++.||+.++
T Consensus 242 L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~---~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~l~ 318 (393)
T 4b4t_O 242 IVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQIS---KIPILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDISKATH 318 (393)
T ss_dssp SCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHH---HSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHHHT
T ss_pred hhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhh---hCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHhC
Confidence 456889999999999999999999988766543 4589999999999999999999876 6799999999999999
Q ss_pred CChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC-------CccchHHHHHHHHHHHHHHHHHHHhhh
Q 014143 367 VPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR-------SKGMKKYTAIDKWNSQLRSLYQTVSNR 428 (430)
Q Consensus 367 l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~-------~~~~~~~~~l~~w~~~v~~l~~~v~~~ 428 (430)
+|+++||.+|++||.+|+|+|+|||++|+|++++. ++...+.++|..|++++++++..|+++
T Consensus 319 i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~~~L~~W~~~v~~l~~~ve~~ 387 (393)
T 4b4t_O 319 LPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEWNDQVEKLGKKMEAR 387 (393)
T ss_dssp CCHHHHHHHHHHHHHHSCSSSCEETTTTEECC-------------------------------------
T ss_pred cCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999874 444567889999999999999999875
No 6
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.1e-21 Score=197.41 Aligned_cols=237 Identities=13% Similarity=0.128 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhh--hcchh
Q 014143 182 LEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE--AGNQR 259 (430)
Q Consensus 182 ~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~--~~~~~ 259 (430)
.-++-+..|.|+..+++..|..+..++..-.+. ....-++.++.|.|++++.+++|.+|..+|..|+..... .....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~-~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gf 309 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTD-VSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGF 309 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTT-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCccc-CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhH
Confidence 445567789999999999999998776311110 112345788899999999999999999999999975432 23346
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCccccccCCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHH
Q 014143 260 RIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLK 339 (430)
Q Consensus 260 ~~~~lky~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~ 339 (430)
+..+++|+++|.+|.|.- | +...+..+.-...+.++..|++||..||+..|...++.|+..|..|... ..+..++.
T Consensus 310 r~~a~K~lI~V~LLlG~i--P-~r~lf~q~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty-~LI~rLr~ 385 (523)
T 4b4t_S 310 LQQSNKLHCCIQLLMGDI--P-ELSFFHQSNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTY-QLCVRLRS 385 (523)
T ss_dssp HHHHHHHHHHHHHHHTCC--C-CHHHHTTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCT-HHHHHHHH
T ss_pred HHHHHHHHHhHHhhcCCC--C-ChHHhhchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChh-HHHHHHHH
Confidence 788999999999998652 2 1111222221134667889999999999999999999999999999865 45788899
Q ss_pred HHHHHHHHHhcccccccchhhHHhHhCCC-hHHHHHHHHHhhhcCceeEeeeccCCEEEEccCCccchHHHHHHHHHHHH
Q 014143 340 NVRTQVLLKLIKPYTRIRIPFISKELNVP-EKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQL 418 (430)
Q Consensus 340 ~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~-~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~~w~~~v 418 (430)
.++.++++++..+|++|++++||..++++ ++++|.++++||.+|.|+|+|||.+|+|.+.+....-...+-...+..+|
T Consensus 386 ~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~ske~~d~yst~ep~~af~~RI 465 (523)
T 4b4t_S 386 NVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTELLNIYDSEDPQQVFDERI 465 (523)
T ss_dssp HHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCEECTTTCCEECCSSSCC--------------
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCceEEEecCCCEEEeCccccccccHHHHHHHHHHH
Confidence 99999999999999999999999999995 78899999999999999999999999999986554333334444455555
Q ss_pred HHHHH
Q 014143 419 RSLYQ 423 (430)
Q Consensus 419 ~~l~~ 423 (430)
+..++
T Consensus 466 ~~cl~ 470 (523)
T 4b4t_S 466 KFANQ 470 (523)
T ss_dssp -----
T ss_pred HHHHH
Confidence 54433
No 7
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=169.12 Aligned_cols=170 Identities=16% Similarity=0.222 Sum_probs=141.8
Q ss_pred HHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCCCCCCccccccCCCCcchHHHHH
Q 014143 221 MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTN 300 (430)
Q Consensus 221 ~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~l~~ 300 (430)
+..+..+.|++++.+++|.+|..+|.+||..++..+...+..+|+|++.+.||.++ +.+++. ..+|.. ..+..
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~-iP~~~l--l~~~~~----~~y~~ 85 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGH-MPTVEL--LKKYHL----MQFAE 85 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTC-EECHHH--HHHTTC----GGGHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCC-CCCHHH--hhhCch----hHHHH
Confidence 45678899999999999999999999999998877777889999999999999875 433221 123431 24678
Q ss_pred HHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhcc------cccccchhhHHhHhC------CC
Q 014143 301 LIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIK------PYTRIRIPFISKELN------VP 368 (430)
Q Consensus 301 L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~------~Y~~I~l~~lA~~l~------l~ 368 (430)
|++|+.+||+..|.+.++.+++.|..| ++-.+.++++..+++.+++ +|++|+++.++..++ ++
T Consensus 86 L~~Avr~Gdl~~f~~~l~~~~~~f~~~-----~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~ 160 (203)
T 3t5x_A 86 VTRAVSEGNLLLLHEALAKHEAFFIRC-----GIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVD 160 (203)
T ss_dssp HHHHHHHTCHHHHHHHHHHTHHHHHHH-----TCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHhCCHHHHHHHHHHhHHHHHHC-----ChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCC
Confidence 999999999999999999988655444 4445678888888777766 799999999999995 48
Q ss_pred hHHHHHHHHHhhhcCceeEeeeccCCEEEEccCC
Q 014143 369 EKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (430)
Q Consensus 369 ~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (430)
.+|||.++++||.+|.|+|+||+.+|++++.+.+
T Consensus 161 ~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~ 194 (203)
T 3t5x_A 161 IDEVQCILANLIYMGHVKGYISHQHQKLVVSKQN 194 (203)
T ss_dssp HHHHHHHHHHHHHHTSSCEEEETTTTEEEECSSC
T ss_pred HHHHHHHHHHHHHcCceEEEEcccccEEEECCCC
Confidence 9999999999999999999999999999998654
No 8
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.3e-17 Score=167.18 Aligned_cols=332 Identities=15% Similarity=0.142 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHH-------HHHHHHHhcCCCCCChhHHHHHHHHHHHHHH
Q 014143 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC-------INNIMDFVSGSASQNFSLLREFYQTTLKALE 127 (430)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~-------v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~ 127 (430)
+.+..++.-..-.++|......+..++++. +.+......++ ++.+...+.+ |+ ......++..+....+
T Consensus 43 ~~l~~~ve~~~~~~~w~~f~~~v~~yl~~~-rdv~~~sl~~s~dll~~~~~~l~~a~~~-~~--~~wi~~l~p~~~~~~~ 118 (455)
T 3t5v_B 43 KQLETFVEQHPAMPNDTRFKIMCTSFLNYA-RDVDPWSAWSSSDLIFEFYQCLINCLIN-DN--APHIEMLIPVATRETE 118 (455)
T ss_dssp HHHHHHHHHSTTCCSCHHHHHHHHHHHHHH-HHCCTTCSSTTHHHHHHHHHHHHTTSSS-TT--CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcchhHHHHHHHHHHHH-HhCCcchHHHHHHHHHHHHHHHHHHHcC-CC--CchHHHhHHHHHHHHH
Confidence 334444433322288999999999999988 54544333333 2222222222 22 2222222222222110
Q ss_pred HhhhhhhHHHHhHHHHHHHHH-----hccHHHHHHHHHHHHhhccCCCCCc--c--hhhcchHHHHHHHHHHHHHhhcCH
Q 014143 128 EAKNERLWFKTNLKLCKIWFD-----MGEYGRMSKILKELHKSCQREDGTD--D--QKKGSQLLEVYAIEIQMYTETKNN 198 (430)
Q Consensus 128 ~~~~~kl~~r~~~~La~~~~~-----~g~~~~A~~~l~el~~~~~~~~~~~--d--~~~~~~~~e~~l~~~~l~~~~~d~ 198 (430)
...+.-.++-.-... ....++|..++.++=..|-+.-+.+ + +.++...+-+.....++|++.++.
T Consensus 119 ------~l~~~a~~lD~~~~~~~~~~~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~ 192 (455)
T 3t5v_B 119 ------FIINLAGKLDSFHLQLHTRSHQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESP 192 (455)
T ss_dssp ------HHHHHHHHHHHTHHHHTCCTTHHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred ------HHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCH
Confidence 111111111111111 2235678888888888775421111 1 112333344444556899999999
Q ss_pred HHHHHHHHHHHhhhccCCC----ch-hHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh-hhhh-----cchhHHHHHHHH
Q 014143 199 KKLKQLYQKALAIKSAIPH----PR-IMGIIRECGGKMHMAERQWADAATDFFEAFKN-YDEA-----GNQRRIQCLKYL 267 (430)
Q Consensus 199 ~ka~~~l~~a~~~~~~~~~----~~-~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~-~~~~-----~~~~~~~~lky~ 267 (430)
.-|+..++..... +.+++ |. -+..+..|.|++++.+++|.+|..+|.+||.. +... ....+..+++|+
T Consensus 193 ~lckni~k~i~~~-~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyL 271 (455)
T 3t5v_B 193 QLCSNIFKNFQPK-SMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYM 271 (455)
T ss_dssp TTHHHHHHTHHHH-CCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-CCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHH
Confidence 9999998765442 22222 33 34577889999999999999999999999998 5432 234677899999
Q ss_pred HHHHHhhCCCCCCCCccccccCCCCcchHH-HHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHH----HH
Q 014143 268 VLANMLMESEVNPFDGQEAKPYKNDPEILA-MTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKN----VR 342 (430)
Q Consensus 268 ~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~----i~ 342 (430)
+.+.||.|.- |-.+...+++ +|.+.. +..|++|+..||+..|.++++.|+..|..+..+-.-+..++.. +.
T Consensus 272 Ipv~LLlG~~--P~~~ll~k~~--~~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLi 347 (455)
T 3t5v_B 272 IPTGLILGKM--VKWGPLRPFL--SQETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLI 347 (455)
T ss_dssp HHHHHHTTCC--BCHHHHGGGS--CHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCC--CCHHHHcccc--hHHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999998652 3222223334 266766 7889999999999999999999998777776532222222222 22
Q ss_pred HHHHHHhcccc--cccchhhHHhHhC---------------------CChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 343 TQVLLKLIKPY--TRIRIPFISKELN---------------------VPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 343 ~~~l~~i~~~Y--~~I~l~~lA~~l~---------------------l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
.+.+...+.+| ++|+++.++..++ ++.+|||.++++||.+|.|+|+||+..|++++.
T Consensus 348 rkv~~~~~~~~~~srI~l~~i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlS 427 (455)
T 3t5v_B 348 KTVIKSWTTEWGQNKLPYSLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVK 427 (455)
T ss_dssp HHHHHHHTTTTCCCEEEHHHHHHHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEEC
T ss_pred HHHHHHHHhcCCCCeeeHHHHHHHHhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEEC
Confidence 22222346678 8999999999987 578999999999999999999999999999998
Q ss_pred cC
Q 014143 400 DR 401 (430)
Q Consensus 400 ~~ 401 (430)
+.
T Consensus 428 K~ 429 (455)
T 3t5v_B 428 KT 429 (455)
T ss_dssp CC
T ss_pred CC
Confidence 77
No 9
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.72 E-value=1.8e-18 Score=132.52 Aligned_cols=73 Identities=23% Similarity=0.349 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCCcc
Q 014143 332 NYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKG 404 (430)
Q Consensus 332 ~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~ 404 (430)
.|+..|.+++.+|||+.+++||++|++++||++|++|++++|.+|++||.+|+|.|+|||++|+|+|.++.+.
T Consensus 7 ~~~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~~ 79 (84)
T 1ufm_A 7 GGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREAS 79 (84)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSCC
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCcccC
Confidence 4678899999999999999999999999999999999999999999999999999999999999999877654
No 10
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=99.31 E-value=8.2e-12 Score=108.44 Aligned_cols=132 Identities=15% Similarity=0.229 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhhCCCCCCCCccccccC---CCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHH
Q 014143 263 CLKYLVLANMLMESEVNPFDGQEAKPY---KNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLK 339 (430)
Q Consensus 263 ~lky~~l~~lL~~~~~~~~~~~~~~~~---~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~ 339 (430)
.+..+++.++.+ +.+..|+....+|- ..+++..|+..|+..|..|++..|...-.. + |.+. ..+.+
T Consensus 25 ~a~~li~~Al~~-p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~G~~~~y~~~~~~----~---p~L~---~~~~~ 93 (169)
T 3chm_A 25 ALGPLIIEATSH-PSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNATR----L---PHLS---PDQIL 93 (169)
T ss_dssp GHHHHHHHHHHC-TTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHHCCHHHHHHHGGG----S---CCCC---HHHHH
T ss_pred HHHHHHHHHhcC-CCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhcCCHHHHHHhHHh----C---cchH---HHHHH
Confidence 455677777754 44555765544441 223557899999999999999999874222 1 3333 67889
Q ss_pred HHHHHHHHHhcccccccchhhHHhHhCCC-hHHHHHHHH-HhhhcCceeEeeeccCCEEEEccCCccc
Q 014143 340 NVRTQVLLKLIKPYTRIRIPFISKELNVP-EKDVEQLLV-SLILDNRIDGHIDQVNRLLERGDRSKGM 405 (430)
Q Consensus 340 ~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~-~~evE~~l~-~lI~~g~i~g~IDq~~g~v~~~~~~~~~ 405 (430)
+++...++.+..-.+.|+++.|++.++++ +++||.+|+ ++|..|.|.|+|||++++|++++..+++
T Consensus 94 KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~R~ 161 (169)
T 3chm_A 94 KLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRD 161 (169)
T ss_dssp HHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEECCTT
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeecCCc
Confidence 99999999998778999999999999999 999999999 9999999999999999999999876553
No 11
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.22 E-value=6.8e-09 Score=101.31 Aligned_cols=237 Identities=11% Similarity=0.024 Sum_probs=176.0
Q ss_pred chhhHHHHHHhhcccC-CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhh
Q 014143 13 FTVSRVLCSILEKGLV-ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN 91 (430)
Q Consensus 13 ~~~~~~~~~~~ak~~~-~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~ 91 (430)
+..+....+-.|.... .+++++|+..|++.++..+++......++..++.+|...|+++++.+++.+.+...+......
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3444444555555443 457999999999999987766565678999999999999999999999999988763322333
Q ss_pred hHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhcc--------------------
Q 014143 92 YSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGE-------------------- 151 (430)
Q Consensus 92 ~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~-------------------- 151 (430)
........+...+....+ .+.....++.+++......+......+...+|.++...|+
T Consensus 85 ~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 162 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGN--FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA 162 (406)
T ss_dssp HHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence 444555555554443222 5556666777766555444444445677899999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHh
Q 014143 152 YGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKM 231 (430)
Q Consensus 152 ~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~ 231 (430)
+++|.+.+.+......... + .......+...+.++...|++.+|..++.++..+.....++...+..+...|.+
T Consensus 163 ~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALG---D---RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc---C---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 9999999988877654331 2 134567788888999999999999999999988877776666667777778999
Q ss_pred hhhhhcHHHHHHHHHHHHHhhhhhcc
Q 014143 232 HMAERQWADAATDFFEAFKNYDEAGN 257 (430)
Q Consensus 232 ~~~~~~y~~A~~~f~ea~~~~~~~~~ 257 (430)
+...|+|.+|..+|.++...+...++
T Consensus 237 ~~~~g~~~~A~~~~~~al~~~~~~~~ 262 (406)
T 3sf4_A 237 YIFLGEFETASEYYKKTLLLARQLKD 262 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHHHHHHHHhCcC
Confidence 99999999999999999876655444
No 12
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.21 E-value=1.1e-08 Score=96.54 Aligned_cols=222 Identities=11% Similarity=0.021 Sum_probs=167.3
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCC
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (430)
..+++++|++.|.+.++..+++......++..++.+|...|+++++.+++.+.+...+..-.......+...+...+...
T Consensus 17 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 96 (338)
T 3ro2_A 17 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 96 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHc
Confidence 34679999999999999877666666789999999999999999999999999887633223334445555555544432
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhcc--------------------HHHHHHHHHHHHhhcc
Q 014143 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGE--------------------YGRMSKILKELHKSCQ 167 (430)
Q Consensus 108 ~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~--------------------~~~A~~~l~el~~~~~ 167 (430)
.+ .+.....++.+++......+......+...+|.++...|+ +++|.+.+.+......
T Consensus 97 g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~ 174 (338)
T 3ro2_A 97 GN--FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT 174 (338)
T ss_dssp TC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cC--HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 22 5556667777766655544444445677799999999999 9999999888776643
Q ss_pred CCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHH
Q 014143 168 REDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFE 247 (430)
Q Consensus 168 ~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~e 247 (430)
... + .......+...+.++...|++.+|..+++++........++...+..+...|.++...|+|.+|..+|-+
T Consensus 175 ~~~---~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 175 ALG---D---RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHT---C---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcC---C---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 321 1 1345667778889999999999999999999877666556666666777789999999999999999999
Q ss_pred HHHhhhhhcc
Q 014143 248 AFKNYDEAGN 257 (430)
Q Consensus 248 a~~~~~~~~~ 257 (430)
+.......++
T Consensus 249 al~~~~~~~~ 258 (338)
T 3ro2_A 249 TLLLARQLKD 258 (338)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhhcc
Confidence 9876655444
No 13
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.17 E-value=1.5e-08 Score=99.65 Aligned_cols=229 Identities=17% Similarity=0.093 Sum_probs=170.6
Q ss_pred HHhhccc-CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 014143 21 SILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINN 99 (430)
Q Consensus 21 ~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~ 99 (430)
+..|... ..+++++|++.|++.++..+++......++..++.+|...|+++++.+++...+...+..-...........
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3344433 345799999999999998876666567899999999999999999999999999886333234444455555
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhcc-----------------HHHHHHHHHHH
Q 014143 100 IMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGE-----------------YGRMSKILKEL 162 (430)
Q Consensus 100 il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~-----------------~~~A~~~l~el 162 (430)
+...+....+ .+.....++.+++......+......+...+|.+|...|+ +++|.+.+.+.
T Consensus 132 l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 132 LGNTLKVMGR--FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCC--HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 5555443222 5556667777766655444444555777899999999999 99999998887
Q ss_pred HhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHH
Q 014143 163 HKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAA 242 (430)
Q Consensus 163 ~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~ 242 (430)
........ + .......+...+.++...|++.+|..+++++..+.....++...+..+...|.++...|+|.+|.
T Consensus 210 l~~~~~~~---~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (411)
T 4a1s_A 210 LKLMRDLG---D---RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA 283 (411)
T ss_dssp HHHHHHHT---C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHcC---C---HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 76643221 1 13456677788899999999999999999998776665565556667777899999999999999
Q ss_pred HHHHHHHHhhhhhcc
Q 014143 243 TDFFEAFKNYDEAGN 257 (430)
Q Consensus 243 ~~f~ea~~~~~~~~~ 257 (430)
.+|-++.......++
T Consensus 284 ~~~~~al~~~~~~~~ 298 (411)
T 4a1s_A 284 EHYKRTLALAVELGE 298 (411)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999887655443
No 14
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.11 E-value=2.5e-08 Score=97.77 Aligned_cols=211 Identities=10% Similarity=-0.014 Sum_probs=156.3
Q ss_pred CCCCHHHHHHHHHHhhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHH
Q 014143 28 VETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT--RNYSEKCINNIMDF 103 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~--k~~~~k~v~~il~~ 103 (430)
..+++++|++.|++.++.-. ++......++..+|.+|...|+++++++++.+.+... +..+ ......+...+...
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY-KEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTCSTTHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHH
Confidence 35689999999999988643 2334467899999999999999999999999999987 4332 44555566666665
Q ss_pred hcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHH
Q 014143 104 VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (430)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e 183 (430)
+....+ .+.....++.+++..+..++......+...+|.+|...|++++|.+.+.+......... + ......
T Consensus 194 ~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~---~---~~~~~~ 265 (383)
T 3ulq_A 194 FLDLKQ--YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN---I---LPSLPQ 265 (383)
T ss_dssp HHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---C---GGGHHH
T ss_pred HHHhcC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc---c---chhHHH
Confidence 554333 56667777777776665545555557778999999999999999999999888654321 1 123477
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhc---HHHHHHHHHHH
Q 014143 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQ---WADAATDFFEA 248 (430)
Q Consensus 184 ~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---y~~A~~~f~ea 248 (430)
.+...+.++...|++.+|..+++++..+.....+|.....+.. .|.++...++ +.+|...|-+.
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF-LKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHhCCCcHHHHHHHHHHHHHC
Confidence 7888899999999999999999999888776667766555333 5667777777 55555554443
No 15
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.10 E-value=2.6e-08 Score=97.15 Aligned_cols=221 Identities=15% Similarity=0.066 Sum_probs=149.6
Q ss_pred CCHHHHHHHHHHhhcCCc--cchhhhHHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHHHHhhh
Q 014143 30 TDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGK--------------------YKEMMDAYREMLTYIKSA 87 (430)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~--------------------~~~l~e~~~~l~~~~~~~ 87 (430)
+++++|++.|.+.++..+ .+......++..++.+|...|+ ++++.+++...+...+..
T Consensus 101 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~ 180 (406)
T 3sf4_A 101 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL 180 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777777777665543 1223345566777777777777 777777777766665222
Q ss_pred hhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014143 88 VTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (430)
Q Consensus 88 ~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~ 167 (430)
-...........+...+....+ .+.....++.+++......+......+...+|.++...|++++|...+.+......
T Consensus 181 ~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 258 (406)
T 3sf4_A 181 GDRAAQGRAFGNLGNTHYLLGN--FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 258 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTB--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 2223333333344333332112 44445555555554444333333445677999999999999999999998887654
Q ss_pred CCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHH
Q 014143 168 REDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFE 247 (430)
Q Consensus 168 ~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~e 247 (430)
... + .......+...+.++...|++.+|..++.++..+.....++...+..+...|.++...|+|.+|..+|-+
T Consensus 259 ~~~---~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 259 QLK---D---RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HTT---C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hCc---C---chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 321 2 1345677778889999999999999999999888777766666666777789999999999999999999
Q ss_pred HHHhhhhhcch
Q 014143 248 AFKNYDEAGNQ 258 (430)
Q Consensus 248 a~~~~~~~~~~ 258 (430)
+.+.....+++
T Consensus 333 al~~~~~~~~~ 343 (406)
T 3sf4_A 333 HLEISREVGDK 343 (406)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHhcCC
Confidence 98877666543
No 16
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.10 E-value=1.3e-08 Score=96.00 Aligned_cols=134 Identities=14% Similarity=-0.026 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHH
Q 014143 114 LLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYT 193 (430)
Q Consensus 114 ~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~ 193 (430)
.....++.+++......+......+...+|.++...|++++|.+.+.+......... + .......+...+.++.
T Consensus 201 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~~la~~~~ 274 (338)
T 3ro2_A 201 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK---D---RAVEAQSCYSLGNTYT 274 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc---c---hhHHHHHHHHHHHHHH
Confidence 334444444443333222223334556777777777777777777777666543321 1 1334556666677777
Q ss_pred hhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhh
Q 014143 194 ETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (430)
Q Consensus 194 ~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (430)
..|++.+|..+++++........++...+..+...|.++...|++.+|..+|-++...+.
T Consensus 275 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 275 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 777777777777777665555445444555555667777777777777777777766543
No 17
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.05 E-value=8.6e-08 Score=93.90 Aligned_cols=187 Identities=11% Similarity=0.041 Sum_probs=141.5
Q ss_pred CCCCHHHHHHHHHHhhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHH
Q 014143 28 VETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT--RNYSEKCINNIMDF 103 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~--k~~~~k~v~~il~~ 103 (430)
..+++++|++.|.+.++..+ .+......++..+|.+|...|+++.+++++.+.+..+ +... ......+...+...
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY-QNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSTTCHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-HhCCCchhhHHHHHHHHHHH
Confidence 46789999999999987644 2344568899999999999999999999999999987 4322 33456666666666
Q ss_pred hcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHH
Q 014143 104 VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (430)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e 183 (430)
+....+ .+...+.++.+++..+..++......+...||.+|...|++++|.+.+.+........ .+ .....
T Consensus 192 y~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~----~~~~~ 262 (378)
T 3q15_A 192 YDDFKH--YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VP----DLLPK 262 (378)
T ss_dssp HHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CG----GGHHH
T ss_pred HHHhCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CC----hhHHH
Confidence 554333 5566777777777666554555555777899999999999999999999988864321 12 22377
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHH
Q 014143 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGII 224 (430)
Q Consensus 184 ~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~ 224 (430)
.+...+.++...|++.+|..+++++..+.....+|.....+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 303 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF 303 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 78888999999999999999999998877666665544433
No 18
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.04 E-value=2.9e-08 Score=97.54 Aligned_cols=221 Identities=13% Similarity=0.024 Sum_probs=142.5
Q ss_pred CCHHHHHHHHHHhhcCCc--cchhhhHHHHHHHHHHHHHhCC-----------------HHHHHHHHHHHHHHHhhhhhh
Q 014143 30 TDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGK-----------------YKEMMDAYREMLTYIKSAVTR 90 (430)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~-----------------~~~l~e~~~~l~~~~~~~~~k 90 (430)
+++++|++.|.+.++..+ .+......++..++.+|...|+ ++++.+++...+...+..-..
T Consensus 140 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 219 (411)
T 4a1s_A 140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence 456666666666655432 1223345566666666666666 666666666665554221122
Q ss_pred hhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCC
Q 014143 91 NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRED 170 (430)
Q Consensus 91 ~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~ 170 (430)
.........+...+.... +.+.....++.+++......+......+...+|.++...|++++|...+.+.........
T Consensus 220 ~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 297 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLG--DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297 (411)
T ss_dssp HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 222233333333332212 244445555555554433223333335667899999999999999999988887754321
Q ss_pred CCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 171 GTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 171 ~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
+ .......+...+.++...|++.+|..+++++..+.....++...+..+...|.++...|+|.+|..+|-++..
T Consensus 298 ---~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 298 ---E---REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp ---C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---C---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 1345677778888999999999999999999877666655555566667778999999999999999999988
Q ss_pred hhhhhcch
Q 014143 251 NYDEAGNQ 258 (430)
Q Consensus 251 ~~~~~~~~ 258 (430)
.+...+++
T Consensus 372 ~~~~~~~~ 379 (411)
T 4a1s_A 372 LAXXXXXX 379 (411)
T ss_dssp HCCHHHHH
T ss_pred HHhhcccc
Confidence 87666554
No 19
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.00 E-value=6.5e-08 Score=89.01 Aligned_cols=218 Identities=13% Similarity=0.053 Sum_probs=150.6
Q ss_pred CCCCHHHHHHHHHHhhcCCc----cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh--hhhhhHHHHHHHHH
Q 014143 28 VETDPEGALAGFAEVVAMEP----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA--VTRNYSEKCINNIM 101 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~----~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~--~~k~~~~k~v~~il 101 (430)
..+++++|++.|++.++.-. .+......++..++.+|...|+++++.+++...+...+.. ........+...+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34567777777777776421 1224467899999999999999999999999999876222 12344555666666
Q ss_pred HHhcCCCCCChhHHHHHHHHHHHHHHHh--hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcc
Q 014143 102 DFVSGSASQNFSLLREFYQTTLKALEEA--KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGS 179 (430)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~e~l~~~--~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~ 179 (430)
..+....+ .+.....++.+++..+.. .+..........+|.++...|++++|...+.+....+....+.++ .
T Consensus 93 ~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~ 166 (283)
T 3edt_B 93 VLYGKRGK--YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD----P 166 (283)
T ss_dssp HHHHTTTC--HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC----H
T ss_pred HHHHHhcc--HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC----H
Confidence 66554233 555666777766654432 112344466779999999999999999999988877433222222 3
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC-------------------------------------------C
Q 014143 180 QLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI-------------------------------------------P 216 (430)
Q Consensus 180 ~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~-------------------------------------------~ 216 (430)
.....+...+.++...|++.+|..+++++....... .
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 456778888899999999999999999986642210 0
Q ss_pred CchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 217 ~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
++......+...|.++...|+|.+|..+|-++.+.
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11223344556688888899999999998887653
No 20
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.95 E-value=2.1e-07 Score=87.09 Aligned_cols=217 Identities=14% Similarity=0.103 Sum_probs=151.4
Q ss_pred CCCHHHHHHHHHHhhcCCc----cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh--hhhhhHHHHHHHHHH
Q 014143 29 ETDPEGALAGFAEVVAMEP----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA--VTRNYSEKCINNIMD 102 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~----~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~--~~k~~~~k~v~~il~ 102 (430)
.+++++|++.|.+.++... .+......++..++.+|...|+++++.+++...+...+.. -...........+..
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 119 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV 119 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4679999999999987522 1234457889999999999999999999999999876222 122344455555555
Q ss_pred HhcCCCCCChhHHHHHHHHHHHHHHHh--hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcch
Q 014143 103 FVSGSASQNFSLLREFYQTTLKALEEA--KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQ 180 (430)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~e~l~~~--~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~ 180 (430)
.+....+ .+.....++.+++..+.. .+......+...+|.++...|++++|.+++.+.........+.++ ..
T Consensus 120 ~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----~~ 193 (311)
T 3nf1_A 120 LYGKRGK--YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD----PN 193 (311)
T ss_dssp HHHTTTC--HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC----HH
T ss_pred HHHHcCc--HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC----HH
Confidence 5544222 555566666666544332 222334466679999999999999999999998887543322222 34
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC-------------------------------------------CC
Q 014143 181 LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI-------------------------------------------PH 217 (430)
Q Consensus 181 ~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~-------------------------------------------~~ 217 (430)
....+...+.++...|++.+|..+++++....... ..
T Consensus 194 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 273 (311)
T 3nf1_A 194 VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD 273 (311)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC
Confidence 56777888899999999999999999987542210 01
Q ss_pred chhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 218 ~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
....+..+...|.++...|+|.+|..+|-++++.
T Consensus 274 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 274 SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1223445566788888999999999999888653
No 21
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.92 E-value=2.6e-07 Score=88.08 Aligned_cols=211 Identities=7% Similarity=-0.020 Sum_probs=145.7
Q ss_pred CCHHHHHHHHHHhhcCCc-------cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 014143 30 TDPEGALAGFAEVVAMEP-------EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD 102 (430)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~-------~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~ 102 (430)
+++++|.+.+++..+..+ .+.+.....+.+++.+|...|+|+++.+.|.+.+......-..........++..
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~ 84 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGM 84 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677777766544211 1223356678888999999999999999999999987333334455666666666
Q ss_pred HhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHH
Q 014143 103 FVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL 182 (430)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~ 182 (430)
.+....+ .+.....++.+++.....++.........++|.+|.. |++++|...+++........ .+ .....
T Consensus 85 ~~~~~g~--~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~---~~---~~~~~ 155 (307)
T 2ifu_A 85 MLKDLQR--MPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE---ER---LRQAA 155 (307)
T ss_dssp HHHHTTC--GGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT---TC---HHHHH
T ss_pred HHHhCCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC---CC---hhHHH
Confidence 6554222 4445666777766544333333334666799999998 99999999998888765432 11 13446
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHH
Q 014143 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (430)
Q Consensus 183 e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (430)
..+...+.++..+|++.+|..+++++..+......+...+..+...|.++...++|..|..+|-++.
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777888999999999999999999987765544433344456666788888889988888877664
No 22
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.91 E-value=9.4e-07 Score=83.49 Aligned_cols=236 Identities=10% Similarity=0.024 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 014143 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (430)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~k 133 (430)
...+.+.+.+|...|+|+++++.|.+.+......-.+...+....++...+....+ .+.....++.+++.-...++..
T Consensus 37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~--~~~A~~~~~~Al~l~~~~g~~~ 114 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN--SVNAVDSLENAIQIFTHRGQFR 114 (292)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHcCCHH
Confidence 44555556677777777777777777766652222233344555555555443222 3344455555554332222211
Q ss_pred hHHHHhHHHHHHHHHh-ccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 134 LWFKTNLKLCKIWFDM-GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 134 l~~r~~~~La~~~~~~-g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
....+..++|.+|... |++++|...+++........ .+ .......+...+.++..+|++.+|..+++++....
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~---~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD---QS---VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT---TC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC---CC---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2234566899999996 99999999999888775421 11 12335677778899999999999999999998765
Q ss_pred ccCCCch-hHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCCCCCCccccccCCC
Q 014143 213 SAIPHPR-IMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKN 291 (430)
Q Consensus 213 ~~~~~~~-~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~l~~lL~~~~~~~~~~~~~~~~~~ 291 (430)
....... .....+...|.++...|+|.+|..+|-++.+.......
T Consensus 189 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---------------------------------- 234 (292)
T 1qqe_A 189 MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD---------------------------------- 234 (292)
T ss_dssp SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------------------------------------
T ss_pred hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC----------------------------------
Confidence 4433322 22335556688888999999998887776431110000
Q ss_pred CcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHH
Q 014143 292 DPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIR 331 (430)
Q Consensus 292 ~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~ 331 (430)
..+...+..+..++..++...|.+.+..|......||...
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 0112234455566666666677777777766666677543
No 23
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.83 E-value=7.7e-07 Score=84.11 Aligned_cols=192 Identities=9% Similarity=0.035 Sum_probs=132.9
Q ss_pred hhHHHHHHhhccc--CCCCHHHHHHHHHHhhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh-h
Q 014143 15 VSRVLCSILEKGL--VETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV-T 89 (430)
Q Consensus 15 ~~~~~~~~~ak~~--~~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~-~ 89 (430)
-.++..|..|-.+ ..+++++|++.|.+.++..+ .+......++.+++.+|.+.|++++++++|.+.+... +.. .
T Consensus 34 ~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~-~~~g~ 112 (292)
T 1qqe_A 34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF-THRGQ 112 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHcCC
Confidence 3444555544322 24679999999999988654 2233357899999999999999999999999999987 432 3
Q ss_pred hhhHHHHHHHHHHHhcCC-CCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccC
Q 014143 90 RNYSEKCINNIMDFVSGS-ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (430)
Q Consensus 90 k~~~~k~v~~il~~~~~~-~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~ 168 (430)
....+....++...+... .+ .+.....++.+++......+......+..++|.++...|+|++|...+++.......
T Consensus 113 ~~~~a~~~~~lg~~~~~~lg~--~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 113 FRRGANFKFELGEILENDLHD--YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 334455666666666542 33 556677777777654432222222356779999999999999999999999887543
Q ss_pred CCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014143 169 EDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (430)
Q Consensus 169 ~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~ 214 (430)
.. .. .....+.+.....++...|++..|..+++++..+.+.
T Consensus 191 ~~---~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 191 NR---LS--QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp CT---TT--GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred CC---cc--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 21 10 0122346667778899999999999999988765443
No 24
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.78 E-value=1.1e-06 Score=86.02 Aligned_cols=207 Identities=9% Similarity=-0.014 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhh-hh
Q 014143 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN-ER 133 (430)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~-~k 133 (430)
..+-..|..+...|+++++++++.+.+...+........+.+...+...+....+ .+.....++.+++......+ ..
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~--~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQ--THVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHhCCCchh
Confidence 3455678999999999999999999998863322344556666666665554333 55666777777776554332 23
Q ss_pred hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 014143 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (430)
Q Consensus 134 l~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~ 213 (430)
....+...+|.+|...|+|++|.+.+.+......... + .......+...+.+|...|++.+|..++.++..+..
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 253 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ---N---DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR 253 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC---C---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3446777999999999999999999998887764331 2 134567778888999999999999999999987665
Q ss_pred cCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q 014143 214 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANM 272 (430)
Q Consensus 214 ~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~l~~l 272 (430)
...+|.. +......|.++...|+|.+|..+|-++.+.....+++..... +..+..+
T Consensus 254 ~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~l~~l 309 (378)
T 3q15_A 254 EKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL--FLFLQAV 309 (378)
T ss_dssp HHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH--HHHHHHH
T ss_pred hhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHH
Confidence 5556665 556667799999999999999999999987766666554432 3444444
No 25
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.74 E-value=8.8e-06 Score=73.61 Aligned_cols=199 Identities=12% Similarity=0.094 Sum_probs=135.1
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHhcC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT--RNYSEKCINNIMDFVSG 106 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~--k~~~~k~v~~il~~~~~ 106 (430)
.+++++|++.|.+.++.. ++ ..++..++.+|...|+++++.+.+...+... +... ..........+...+..
T Consensus 18 ~~~~~~A~~~~~~a~~~~-~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~l~~~~~~ 91 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH-KD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQG-REMRADYKVISKSFARIGNAYHK 91 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS-CC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhh-cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-cccccchHHHHHHHHHHHHHHHH
Confidence 467999999999999876 32 5788899999999999999999999998876 4321 11112333333333332
Q ss_pred CCCCChhHHHHHHHHHHH-------------------HHHHhh-hhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014143 107 SASQNFSLLREFYQTTLK-------------------ALEEAK-NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (430)
Q Consensus 107 ~~~~~~~~~~~~~~~~~e-------------------~l~~~~-~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~ 166 (430)
..+ .+.....++.+++ .++.+. .......+...+|.++...|++++|.+.+.+.....
T Consensus 92 ~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 169 (258)
T 3uq3_A 92 LGD--LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169 (258)
T ss_dssp TTC--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccc--HHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 122 2233333333333 111110 111122455689999999999999999999988773
Q ss_pred cCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHH
Q 014143 167 QREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFF 246 (430)
Q Consensus 167 ~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ 246 (430)
.. ....+...+.++...|++.+|...++++....+ . ....+...|.++...|++.+|..+|.
T Consensus 170 ~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-----~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 170 PE------------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-----N-FVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cc------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-----H-HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 21 135666778889999999999999998876532 1 12344556888889999999999999
Q ss_pred HHHHhhh
Q 014143 247 EAFKNYD 253 (430)
Q Consensus 247 ea~~~~~ 253 (430)
.+.+...
T Consensus 232 ~a~~~~~ 238 (258)
T 3uq3_A 232 AARTKDA 238 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHhCh
Confidence 9987553
No 26
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.73 E-value=3.8e-06 Score=82.03 Aligned_cols=203 Identities=7% Similarity=0.026 Sum_probs=149.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhh-hhhHHHH
Q 014143 60 TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN-ERLWFKT 138 (430)
Q Consensus 60 l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~-~kl~~r~ 138 (430)
.|.++...|+++++++++.+.+...+..-.....+.+...+...+....+ .+.....++.+++......+ ......+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQ--TYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 68899999999999999999998763322333455666666655554333 55667777777776655433 3344477
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH- 217 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~- 217 (430)
...+|.+|...|+|++|.+.+.+......... + .......+...+.+|...|++.+|..+++++..+.....+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEK---Q---PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC---C---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 78999999999999999999998887765431 2 1445677788889999999999999999999887766666
Q ss_pred chhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHh
Q 014143 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANML 273 (430)
Q Consensus 218 ~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~l~~lL 273 (430)
|.. +......|.++...|+|.+|..+|-++.......+++..... +..++.+.
T Consensus 261 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~l~~~~ 313 (383)
T 3ulq_A 261 PSL-PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE--FEFLKSLY 313 (383)
T ss_dssp GGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH--HHHHHHHH
T ss_pred hhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHH
Confidence 544 555666789999999999999999999887766666544333 34455554
No 27
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.72 E-value=7.5e-06 Score=76.33 Aligned_cols=197 Identities=13% Similarity=0.138 Sum_probs=140.0
Q ss_pred hhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh--hhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHH
Q 014143 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV--TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE 128 (430)
Q Consensus 51 ~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~--~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~ 128 (430)
+....++..++.++...|+++++.+++...+...+... ...........+...+....+ .+.....++.+++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK--YKDAANLLNDALAIREK 101 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999763221 234444555555554443222 44556666666665443
Q ss_pred h--hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 014143 129 A--KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQ 206 (430)
Q Consensus 129 ~--~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~ 206 (430)
. .+......+...+|.++...|++++|.+.+.+.........|.++ ......+...+.++...|++.+|..+++
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH----PDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2 223344466779999999999999999999988876532111111 3456777788899999999999999999
Q ss_pred HHHhhhccCC--CchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhh
Q 014143 207 KALAIKSAIP--HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (430)
Q Consensus 207 ~a~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (430)
++........ ++......+...|.++...|+|.+|..+|.++.....
T Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 226 (311)
T 3nf1_A 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226 (311)
T ss_dssp HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9977654442 2233445566678899999999999999999987543
No 28
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.71 E-value=5.2e-06 Score=72.64 Aligned_cols=182 Identities=10% Similarity=0.039 Sum_probs=136.2
Q ss_pred cCCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC
Q 014143 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (430)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (430)
+..+++++|.+.++.+.. ++ .....++..++.++...|+++++.+++...+... ...
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~------------------ 59 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HP---ATASGARFMLGYVYAFMDRFDEARASFQALQQQA-QKS------------------ 59 (203)
T ss_dssp ----CHHHHHHHHHHHHT-ST---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTT------------------
T ss_pred cccccHHHHHHHHHHhcC-Ch---HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH-HHc------------------
Confidence 346789999995555532 22 2247889999999999999999999999988876 221
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHH
Q 014143 107 SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (430)
Q Consensus 107 ~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l 186 (430)
++ . .....+...+|.++...|++++|.+.+.+........+ ++ .......+.
T Consensus 60 -~~--~--------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~---~~~~~~~~~ 111 (203)
T 3gw4_A 60 -GD--H--------------------TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP--ED---PLAASANAY 111 (203)
T ss_dssp -CC--H--------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CC---HHHHHHHHH
T ss_pred -CC--c--------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--cc---HHHHHHHHH
Confidence 11 0 00112345899999999999999999998887754321 11 124566777
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcchh
Q 014143 187 IEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQR 259 (430)
Q Consensus 187 ~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~ 259 (430)
..+.++...|++.+|..++.++........++...+......|.++...|+|.+|..+|.++...+...+++.
T Consensus 112 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 184 (203)
T 3gw4_A 112 EVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSE 184 (203)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH
Confidence 8889999999999999999999877766667776677677789999999999999999999998887777653
No 29
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.68 E-value=2.3e-06 Score=80.59 Aligned_cols=198 Identities=11% Similarity=0.042 Sum_probs=138.0
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhh-HHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhh
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNY-SEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 131 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~-~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ 131 (430)
....+.+.+..+...|+++++.+.+.+.+... +..+... .......+...+.... +.+.....++.+++......+
T Consensus 74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~--~~~~Ai~~~~~al~~~~~~~~ 150 (293)
T 3u3w_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKV--DYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHTCCCCSC
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHccc--CHHHHHHHHHHHHHHhccccc
Confidence 35566677888999999999999999988753 2222211 1223333444443311 244455555555542111112
Q ss_pred hhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 132 ~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
......+...+|.+|...|+|++|..++.+........++ + ......++...+.+|..+|++.+|..++++|..+
T Consensus 151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--~---~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--N---EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC--C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc--c---hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 2223356779999999999999999999998876543322 2 2456778888999999999999999999999887
Q ss_pred hccCCCchhHHHHHHhhhHhhhhhh-cHHHHHHHHHHHHHhhhhhcch
Q 014143 212 KSAIPHPRIMGIIRECGGKMHMAER-QWADAATDFFEAFKNYDEAGNQ 258 (430)
Q Consensus 212 ~~~~~~~~~~~~~~~~~g~~~~~~~-~y~~A~~~f~ea~~~~~~~~~~ 258 (430)
.....+....+..+...|.++...| +|.+|..+|.++...+...+++
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~ 273 (293)
T 3u3w_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMH 273 (293)
T ss_dssp HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 7666555566778888899999999 5799999999998877666554
No 30
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.62 E-value=3.9e-06 Score=79.01 Aligned_cols=199 Identities=11% Similarity=0.033 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014143 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR-NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (430)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k-~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 132 (430)
...+...+..+...|+++++.+.+...++.. +.... .........+...+.... +.+.....++.+++......+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKV--DYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHTTCCCSSCT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcCCch
Confidence 4456667889999999999999999887754 22111 111122222333333211 2334444444444321111122
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
.....+...+|.+|...|+|++|...+.+........++ + ....+.++...+.+|..+|++.+|..+++++..+.
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~--~---~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--N---EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc--c---ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 223466779999999999999999999998865433221 1 12234678888999999999999999999998776
Q ss_pred ccCCCchhHHHHHHhhhHhhhhhhcHHHH-HHHHHHHHHhhhhhcchhH
Q 014143 213 SAIPHPRIMGIIRECGGKMHMAERQWADA-ATDFFEAFKNYDEAGNQRR 260 (430)
Q Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~~y~~A-~~~f~ea~~~~~~~~~~~~ 260 (430)
....++...+..+...|.++...|+|.+| ..+|-++...+...+++..
T Consensus 227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~ 275 (293)
T 2qfc_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAY 275 (293)
T ss_dssp HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhh
Confidence 55555556677778889999999999999 7778888777766665543
No 31
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.61 E-value=2.3e-06 Score=80.65 Aligned_cols=188 Identities=11% Similarity=0.058 Sum_probs=136.9
Q ss_pred cCCCCHHHHHHHHHHhhcCCccchhh--hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh
Q 014143 27 LVETDPEGALAGFAEVVAMEPEKAEW--GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (430)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~--~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~ 104 (430)
+..+++++|++.++++++..+..... ....+..++.++...|+++++++++.+.+..............+...+...+
T Consensus 86 ~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 3u3w_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 44678999999999998866532221 2345566899999999999999999999985412222223344566666655
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHHh-hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHH
Q 014143 105 SGSASQNFSLLREFYQTTLKALEEA-KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (430)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~e~l~~~-~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e 183 (430)
....+ .+.....++.+++..+.. .+......+...+|.+|...|+|++|.+++.+......... + ......
T Consensus 166 ~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~---~---~~~~~~ 237 (293)
T 3u3w_A 166 AENGY--LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN---S---MALIGQ 237 (293)
T ss_dssp HHTTC--HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---B---CTTHHH
T ss_pred HHcCC--HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC---c---HHHHHH
Confidence 54233 667778888888776654 34445667888999999999999999999998888764321 2 244578
Q ss_pred HHHHHHHHHHhhc-CHHHHHHHHHHHHhhhccCCCchhHH
Q 014143 184 VYAIEIQMYTETK-NNKKLKQLYQKALAIKSAIPHPRIMG 222 (430)
Q Consensus 184 ~~l~~~~l~~~~~-d~~ka~~~l~~a~~~~~~~~~~~~~~ 222 (430)
++...+.++..+| ++.+|..++++|..+.....++....
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~~~~~ 277 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKE 277 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCTGGGG
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 8888899999999 57999999999988776666655443
No 32
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.60 E-value=4.5e-06 Score=72.29 Aligned_cols=153 Identities=16% Similarity=0.209 Sum_probs=101.8
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|+++++.+|++ ..++..++.+|.+.|+++++++.+....... |
T Consensus 18 ~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-----------------------~ 70 (184)
T 3vtx_A 18 KGDFDGAIRAYKKVLKADPNN----VETLLKLGKTYMDIGLPNDAIESLKKFVVLD-----------------------T 70 (184)
T ss_dssp HTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------C
T ss_pred cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----------------------c
Confidence 356788888888887777654 4566777788888888877777776655432 1
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
+ . ......+|.++...++++.|.+.+.+....... ..+.+...
T Consensus 71 ~--~-----------------------~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~------------~~~~~~~l 113 (184)
T 3vtx_A 71 T--S-----------------------AEAYYILGSANFMIDEKQAAIDALQRAIALNTV------------YADAYYKL 113 (184)
T ss_dssp C--C-----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHH
T ss_pred h--h-----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------------chHHHHHH
Confidence 1 0 011235667777778888888877777666321 23455566
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
+.++...|++.+|...++++.... |. ....+...|.++...|+|.+|..+|-++.+.
T Consensus 114 g~~~~~~g~~~~A~~~~~~~l~~~-----p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 114 GLVYDSMGEHDKAIEAYEKTISIK-----PG-FIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-----TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCchhHHHHHHHHHHhc-----ch-hhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 777888888888888888776553 21 1223445577788888888888888887653
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.59 E-value=1.2e-05 Score=72.18 Aligned_cols=192 Identities=14% Similarity=0.105 Sum_probs=112.7
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh-cCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV-SGS 107 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~-~~~ 107 (430)
.+++++|+..|.+.++.+|++ ..++..++.++.+.|+++++.+.++..++.- |........-. .+.... ...
T Consensus 18 ~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg--~~~~~~~~~~ 90 (217)
T 2pl2_A 18 LGRYDAALTLFERALKENPQD----PEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS--EAYVALYRQA 90 (217)
T ss_dssp TTCHHHHHHHHHHHHTTSSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH--HHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH--HHHHHhhhhh
Confidence 467999999999999998865 5678899999999999999999999999875 54222111110 011101 000
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhh-hhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHH
Q 014143 108 ASQNFSLLREFYQTTLKALEEAKN-ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (430)
Q Consensus 108 ~~~~~~~~~~~~~~~~e~l~~~~~-~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l 186 (430)
+. ......-++.+++.++.+.. ..-.......+|.++...|++++|...+++..... + ..+.+.
T Consensus 91 ~~--~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~------------~~~~~~ 155 (217)
T 2pl2_A 91 ED--RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-D------------TPEIRS 155 (217)
T ss_dssp SS--HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C------------CHHHHH
T ss_pred hh--hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c------------chHHHH
Confidence 00 11111222333333322100 00112344588999999999999999999888773 1 134556
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHH
Q 014143 187 IEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (430)
Q Consensus 187 ~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea 248 (430)
..+.++...|++.+|...++++....+. ++ ..+...|.++...|++.+|...|-.+
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~--~~----~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPK--DL----DLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT--CH----HHHHHHHHHHTC--------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--Ch----HHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6778889999999999999988765321 12 23344477788889999988887765
No 34
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.59 E-value=6.3e-06 Score=68.47 Aligned_cols=157 Identities=15% Similarity=0.021 Sum_probs=121.3
Q ss_pred hhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHh
Q 014143 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (430)
Q Consensus 50 ~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~ 129 (430)
......++..++.++...|+++++.+++...+... +.. ++ .
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~-------------------~~--~----------------- 45 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-KEF-------------------GD--K----------------- 45 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHH-------------------TC--H-----------------
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHh-------------------CC--c-----------------
Confidence 34457889999999999999999999999988875 221 11 0
Q ss_pred hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014143 130 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (430)
Q Consensus 130 ~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~ 209 (430)
.....+...+|.++...|++++|.+.+.+......... + .......+...+.++...|++.+|..+++++.
T Consensus 46 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 46 ---AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK---D---RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---C---cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 00112345889999999999999999999887754321 2 13456677788899999999999999999998
Q ss_pred hhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhh
Q 014143 210 AIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (430)
.......++...+......|.++...|++.+|..+|.++.+.+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 117 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 777666666666667777799999999999999999998775543
No 35
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.58 E-value=7.8e-06 Score=77.68 Aligned_cols=175 Identities=9% Similarity=0.057 Sum_probs=129.2
Q ss_pred CCCHHHHHHHHHHhhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC
Q 014143 29 ETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (430)
.+++++|++.|.+.++..+ .+......++.+++.+|...|++++++++|.+.+.................++...+..
T Consensus 49 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~ 128 (307)
T 2ifu_A 49 AKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP 128 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence 3578999999998887654 22334578999999999999999999999999999873322344456677777777765
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHH
Q 014143 107 SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (430)
Q Consensus 107 ~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l 186 (430)
. +.+.....++.+++......+......+..++|.+|...|+|++|...+.+......... + .......++
T Consensus 129 -g--~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~ 199 (307)
T 2ifu_A 129 -L--DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME---N---YPTCYKKCI 199 (307)
T ss_dssp -T--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---C---HHHHHHHHH
T ss_pred -C--CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC---C---hhHHHHHHH
Confidence 3 366677788888776544323233346777999999999999999999999887754321 1 122345667
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 014143 187 IEIQMYTETKNNKKLKQLYQKALAIKS 213 (430)
Q Consensus 187 ~~~~l~~~~~d~~ka~~~l~~a~~~~~ 213 (430)
..+.++...|++.+|..+++++. ...
T Consensus 200 ~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 200 AQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred HHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 77788889999999999999987 543
No 36
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.56 E-value=4e-06 Score=80.91 Aligned_cols=201 Identities=11% Similarity=0.048 Sum_probs=107.7
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh---------------hhhH
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT---------------RNYS 93 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~---------------k~~~ 93 (430)
.+++++|++.|++.++.+|++ ..++..++.+|...|+++++.+.+...+... +... ....
T Consensus 78 ~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 152 (365)
T 4eqf_A 78 EGDLPVTILFMEAAILQDPGD----AEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDA 152 (365)
T ss_dssp HTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHH
Confidence 346788888888887776543 4566777777777777777777777776653 2211 0111
Q ss_pred HHHHHHHHHHhcCCCCCC---------------hhHHHHHHHHHHHHHHHh---hhhhhHHHHhHHHHHHHHHhccHHHH
Q 014143 94 EKCINNIMDFVSGSASQN---------------FSLLREFYQTTLKALEEA---KNERLWFKTNLKLCKIWFDMGEYGRM 155 (430)
Q Consensus 94 ~k~v~~il~~~~~~~~~~---------------~~~~~~~~~~~~e~l~~~---~~~kl~~r~~~~La~~~~~~g~~~~A 155 (430)
.+..+.++..-...+..- .-....-++.+++.++.+ ........+...+|.++...|++++|
T Consensus 153 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A 232 (365)
T 4eqf_A 153 CEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRA 232 (365)
T ss_dssp HHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHH
Confidence 112222222111000000 000001112222222211 01100123345677777778888888
Q ss_pred HHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhh
Q 014143 156 SKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAE 235 (430)
Q Consensus 156 ~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~ 235 (430)
.+.+.+....... ....+...+.++...|++.+|...++++.... |.. ...+...|.++...
T Consensus 233 ~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~-~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 233 IDAFNAALTVRPE------------DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-----PGF-IRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCc-hHHHHHHHHHHHHC
Confidence 8777777666321 12355556677777788888888777776542 111 22344456777777
Q ss_pred hcHHHHHHHHHHHHHhh
Q 014143 236 RQWADAATDFFEAFKNY 252 (430)
Q Consensus 236 ~~y~~A~~~f~ea~~~~ 252 (430)
|+|.+|..+|..+.+..
T Consensus 295 g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQ 311 (365)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 78888877777776543
No 37
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.54 E-value=1.9e-05 Score=72.57 Aligned_cols=187 Identities=9% Similarity=0.098 Sum_probs=125.9
Q ss_pred HHHHHhhcccC-CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 014143 18 VLCSILEKGLV-ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (430)
Q Consensus 18 ~~~~~~ak~~~-~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~ 96 (430)
...|..|.... .+++++|++.|.++++..|++ .+...++..++.+|...|+++++++.+..++... +.
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-p~--------- 84 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH-EWAADAQFYLARAYYQNKEYLLAASEYERFIQIY-QI--------- 84 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-CC---------
Confidence 34455555543 457999999999999987743 3457899999999999999999999999988865 32
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHH--------hccHHHHHHHHHHHHhhccC
Q 014143 97 INNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD--------MGEYGRMSKILKELHKSCQR 168 (430)
Q Consensus 97 v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~--------~g~~~~A~~~l~el~~~~~~ 168 (430)
.|. . . .....+|..+.. .|++++|...+.++....++
T Consensus 85 ----------~~~--~--~---------------------~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 129 (261)
T 3qky_A 85 ----------DPR--V--P---------------------QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN 129 (261)
T ss_dssp ----------CTT--H--H---------------------HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred ----------Cch--h--H---------------------HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence 011 0 0 113467777877 99999999999999887543
Q ss_pred CCCCcchh-----hcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhh--------
Q 014143 169 EDGTDDQK-----KGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAE-------- 235 (430)
Q Consensus 169 ~~~~~d~~-----~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~-------- 235 (430)
.+...+.. ......+.+...+.++...|++.+|...++++..... +...........|.++...
T Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~a~~~l~~~~~~~g~~~~~~~ 206 (261)
T 3qky_A 130 HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYP---DTPWADDALVGAMRAYIAYAEQSVRAR 206 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TSTTHHHHHHHHHHHHHHHHHTSCGGG
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHhcccchhhc
Confidence 21000000 0000011125667889999999999999998865432 2111222333345555543
Q ss_pred --hcHHHHHHHHHHHHHhhh
Q 014143 236 --RQWADAATDFFEAFKNYD 253 (430)
Q Consensus 236 --~~y~~A~~~f~ea~~~~~ 253 (430)
++|.+|...|..+.+.+.
T Consensus 207 ~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 207 QPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHCT
T ss_pred ccchHHHHHHHHHHHHHHCC
Confidence 999999999999987663
No 38
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.51 E-value=1.4e-05 Score=75.10 Aligned_cols=194 Identities=12% Similarity=0.024 Sum_probs=122.2
Q ss_pred CHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCC
Q 014143 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ 110 (430)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~ 110 (430)
++++|++.|.+.++.+++. ..++..++.++...|+++++.+.+...+... +...... ..+...+....+
T Consensus 106 ~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~-----~~l~~~~~~~~~- 174 (330)
T 3hym_B 106 KNEHARRYLSKATTLEKTY----GPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPM-----LYIGLEYGLTNN- 174 (330)
T ss_dssp CHHHHHHHHHHHHTTCTTC----THHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHH-----HHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHH-----HHHHHHHHHHhh-
Confidence 5677777777777665543 2345667777777777777777777777664 3211111 111121111111
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHH
Q 014143 111 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ 190 (430)
Q Consensus 111 ~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~ 190 (430)
.+.....++.+++ ...+ ...+...+|.++...|++++|...+.+.........+... .......+...+.
T Consensus 175 -~~~A~~~~~~al~---~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~la~ 244 (330)
T 3hym_B 175 -SKLAERFFSQALS---IAPE---DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT---VDKWEPLLNNLGH 244 (330)
T ss_dssp -HHHHHHHHHHHHT---TCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT---TTTCCHHHHHHHH
T ss_pred -HHHHHHHHHHHHH---hCCC---ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc---ccHHHHHHHHHHH
Confidence 2233333333322 1111 1234568999999999999999999998887543321111 1223567778888
Q ss_pred HHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 191 MYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 191 l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
++...|++.+|..+++++...... + ...+...|.++...|+|.+|..+|-++.+.
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~~~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLIPQ--N----ASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT--C----SHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHhcCHHHHHHHHHHHHhhCcc--c----hHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999998765322 1 223445588888999999999999988653
No 39
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.51 E-value=7.7e-06 Score=77.00 Aligned_cols=185 Identities=9% Similarity=0.025 Sum_probs=132.5
Q ss_pred CCCCHHHHHHHHHHhhcCCccc--hhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc
Q 014143 28 VETDPEGALAGFAEVVAMEPEK--AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVS 105 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~--~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~ 105 (430)
..+++++|++.+.+.++..+.. ..........++.++...|+++++++++.+.+..............+...+...+.
T Consensus 87 ~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 166 (293)
T 2qfc_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA 166 (293)
T ss_dssp HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 4668999999999998876532 12234455678999999999999999999988764222222233455666666555
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhhhh-hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHH
Q 014143 106 GSASQNFSLLREFYQTTLKALEEAKNER-LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (430)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~e~l~~~~~~k-l~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~ 184 (430)
...+ .+.....++.+++..+...+.. ....+...+|.+|...|+|++|.+.+++........ .+ .......
T Consensus 167 ~~~~--~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~---~~---~~~~~~~ 238 (293)
T 2qfc_A 167 ENGY--LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI---NS---MALIGQL 238 (293)
T ss_dssp HTTC--HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TB---CSSHHHH
T ss_pred HcCC--HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc---Cc---HHHHHHH
Confidence 4233 5667778888876655443322 333677899999999999999999999988775322 12 2446788
Q ss_pred HHHHHHHHHhhcCHHHH-HHHHHHHHhhhccCCCchh
Q 014143 185 YAIEIQMYTETKNNKKL-KQLYQKALAIKSAIPHPRI 220 (430)
Q Consensus 185 ~l~~~~l~~~~~d~~ka-~~~l~~a~~~~~~~~~~~~ 220 (430)
+...+.+|..+|++.+| ..++++|..+.....++..
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~ 275 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAY 275 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhh
Confidence 88899999999999999 8999999877766655544
No 40
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.49 E-value=2.4e-05 Score=74.99 Aligned_cols=201 Identities=13% Similarity=0.094 Sum_probs=126.1
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh---------------hhhH
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT---------------RNYS 93 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~---------------k~~~ 93 (430)
.+++++|++.|.+.++.+|++ ..++..++.++...|+++++.+.+...+... +... ....
T Consensus 77 ~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 151 (368)
T 1fch_A 77 EGDLPNAVLLFEAAVQQDPKH----MEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQA 151 (368)
T ss_dssp TTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 457999999999999887654 4577788999999999999999999888764 3211 1112
Q ss_pred HHHHHHHHHHhcCCCCCC------------------hh--HHHHHHHHHHHHHHHh---hhhhhHHHHhHHHHHHHHHhc
Q 014143 94 EKCINNIMDFVSGSASQN------------------FS--LLREFYQTTLKALEEA---KNERLWFKTNLKLCKIWFDMG 150 (430)
Q Consensus 94 ~k~v~~il~~~~~~~~~~------------------~~--~~~~~~~~~~e~l~~~---~~~kl~~r~~~~La~~~~~~g 150 (430)
.+..+.++......+... .. .....++.+++.++.+ ........+...+|.++...|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g 231 (368)
T 1fch_A 152 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG 231 (368)
T ss_dssp HHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC
Confidence 222223332221111000 00 0111222222222221 011002244557899999999
Q ss_pred cHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhH
Q 014143 151 EYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGK 230 (430)
Q Consensus 151 ~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~ 230 (430)
++++|...+.+....... ....+...+.++...|++.+|...++++..... . ....+...|.
T Consensus 232 ~~~~A~~~~~~al~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~-~~~~~~~l~~ 293 (368)
T 1fch_A 232 EYDKAVDCFTAALSVRPN------------DYLLWNKLGATLANGNQSEEAVAAYRRALELQP-----G-YIRSRYNLGI 293 (368)
T ss_dssp CHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----C-cHHHHHHHHH
Confidence 999999999888776321 134566777888899999999999988876532 1 1233455578
Q ss_pred hhhhhhcHHHHHHHHHHHHHhh
Q 014143 231 MHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 231 ~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
++...|+|.+|..+|..+....
T Consensus 294 ~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 294 SCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC
Confidence 8888999999999998887654
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.47 E-value=2.2e-05 Score=71.19 Aligned_cols=190 Identities=11% Similarity=0.032 Sum_probs=127.6
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|.+.++..++. ..++..++.+|...|+++++.+++...+... +.. ......+...+....
T Consensus 50 ~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~-----~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 50 RGNTEQAKVPLRKALEIDPSS----ADAHAALAVVFQTEMEPKLADEEYRKALASD-SRN-----ARVLNNYGGFLYEQK 119 (252)
T ss_dssp TTCTGGGHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-----HHHHHHHHHHHHHTT
T ss_pred cCChHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCc-----HHHHHHHHHHHHHHh
Confidence 457899999999998876643 4678889999999999999999999998864 321 122222333222211
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
+ .+.....++.+++ .............+|.++...|++++|.+.+.+....... ....+...
T Consensus 120 ~--~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~l 181 (252)
T 2ho1_A 120 R--YEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN------------QPSVALEM 181 (252)
T ss_dssp C--HHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------------CHHHHHHH
T ss_pred H--HHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc------------cHHHHHHH
Confidence 2 3233333333322 0011222345568899999999999999999988776321 13556677
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
+.++...|++.+|..++.++...... ++ ..+...+.++...+++.+|..+|..+.+.+
T Consensus 182 a~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 182 ADLLYKEREYVPARQYYDLFAQGGGQ--NA----RSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSCC--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcC--cH----HHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 78899999999999999887653211 11 233445677778899999999888886644
No 42
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.46 E-value=0.00012 Score=70.66 Aligned_cols=213 Identities=8% Similarity=-0.049 Sum_probs=142.8
Q ss_pred CCCCHHHHHHHHHHhhcCCccc-hhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHhc
Q 014143 28 VETDPEGALAGFAEVVAMEPEK-AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN-YSEKCINNIMDFVS 105 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~-~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~-~~~k~v~~il~~~~ 105 (430)
..+++++|++.+.+.+...+.. ......++..++.++...|+++++.+.+...+... +..+.. ........+...+.
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA-RQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHH
Confidence 3578999999999998876533 23356788899999999999999999999999876 332222 22222223322222
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhhh--hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHH
Q 014143 106 GSASQNFSLLREFYQTTLKALEEAKNE--RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (430)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~e~l~~~~~~--kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e 183 (430)
... +.+.....++.+++........ .........+|.++...|++++|...+.+........ .+ .....
T Consensus 105 ~~G--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~----~~~~~ 175 (373)
T 1hz4_A 105 AQG--FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY---QP----QQQLQ 175 (373)
T ss_dssp HTT--CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS---CG----GGGHH
T ss_pred HCC--CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc---Cc----HHHHH
Confidence 212 2445556666665544332221 1233455689999999999999999999988876542 12 12446
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc-hhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP-RIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 184 ~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
.+...++++...|++.+|..+++.+.........| ..........+.++...|++.+|...+.++..
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 243 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 243 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 67778899999999999999999997765443333 22222222344557788999999998887754
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.46 E-value=8.9e-05 Score=65.31 Aligned_cols=190 Identities=13% Similarity=0.050 Sum_probs=121.0
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|.+.++..+++ ..++..++.+|...|+++++.+++...+... +.. ......+...+...+
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~-----~~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 21 GQDYRQATASIEDALKSDPKN----ELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDS-----AEINNNYGWFLCGRL 90 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-----HHHHHHHHHHHHTTT
T ss_pred HhhHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCC-----hHHHHHHHHHHHHhc
Confidence 467999999999999877644 4577889999999999999999999988864 321 112233333333320
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
+ +.+.....++.+++ .............+|.++...|++++|...+.+....... ....+...
T Consensus 91 ~-~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l 153 (225)
T 2vq2_A 91 N-RPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ------------FPPAFKEL 153 (225)
T ss_dssp C-CHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------CHHHHHHH
T ss_pred C-cHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CchHHHHH
Confidence 1 23333444444433 1111112234457888888889999998888888766321 13455666
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
+.++...|++.+|..+++++...... .++ ..+...+.++...+++..|..++-.+..
T Consensus 154 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 154 ARTKMLAGQLGDADYYFKKYQSRVEV-LQA----DDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCS-CCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CCH----HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 77888889999998888887655320 111 1233445666677788777766655543
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.44 E-value=1.2e-05 Score=72.27 Aligned_cols=196 Identities=9% Similarity=-0.026 Sum_probs=127.1
Q ss_pred HHHhhcccC-CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 014143 20 CSILEKGLV-ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (430)
Q Consensus 20 ~~~~ak~~~-~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~ 98 (430)
.+..|.... .+++++|++.|.+.++..+++ ..++..++.++...|+++++.+.+...+... +.. .....
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~-----~~~~~ 95 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKED----AIPYINFANLLSSVNELERALAFYDKALELD-SSA-----ATAYY 95 (243)
T ss_dssp ----------------CCTTHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-----HHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-Ccc-----hHHHH
Confidence 344444443 457999999999999877654 5678889999999999999999999998864 321 12222
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhc
Q 014143 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (430)
Q Consensus 99 ~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~ 178 (430)
.+...+....+ .+.....++.+++. ..+ ...+...+|.++...|++++|.+.+.+.......
T Consensus 96 ~la~~~~~~~~--~~~A~~~~~~~~~~---~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------- 157 (243)
T 2q7f_A 96 GAGNVYVVKEM--YKEAKDMFEKALRA---GME---NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN---------- 157 (243)
T ss_dssp HHHHHHHHTTC--HHHHHHHHHHHHHH---TCC---SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT----------
T ss_pred HHHHHHHHhcc--HHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc----------
Confidence 23332222122 33444444444332 111 1234558899999999999999999998877321
Q ss_pred chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 179 ~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
....+...+.++...|++.+|...+.++...... + ...+...|.++...|++.+|..+|.++.+.
T Consensus 158 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 158 --DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG--H----ADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp --CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--c----HHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 1345667778899999999999999988654321 1 224455688888999999999999998764
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.41 E-value=1.6e-05 Score=72.84 Aligned_cols=122 Identities=11% Similarity=0.158 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|.++++.+|++ ..++..++.+|...|+++++++.+...+. . +. ...........+...+....
T Consensus 16 ~~~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~-~~-~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKKYNS----PYIYNRRAVCYYELAKYDLAQKDIETYFS-K-VN-ATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp TTCHHHHHHHHHHHHHTTCCC----STTHHHHHHHHHHTTCHHHHHHHHHHHHT-T-SC-TTTCCHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-c-cC-chhHHHHHHHHHHHHHHHcc
Confidence 456777777777777776543 22456667777777777777777777776 2 31 22222222333333322211
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~ 165 (430)
+ .+.....++.+++. ..+ . ..+...+|.++...|++++|.+.+.+....
T Consensus 89 ~--~~~A~~~~~~a~~~---~~~-~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 89 Q--DSLAIQQYQAAVDR---DTT-R--LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp C--HHHHHHHHHHHHHH---STT-C--THHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred c--HHHHHHHHHHHHhc---Ccc-c--HHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 1 33334444444331 100 0 122335566666666666666555555443
No 46
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.41 E-value=2.9e-05 Score=73.59 Aligned_cols=196 Identities=10% Similarity=0.087 Sum_probs=135.1
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|.+.++..+++ ..++..++.++...|+++++.+.+...+... +... .....+...+....
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVWD----AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNT-----EAFYKISTLYYQLG 202 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCH-----HHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-----HHHHHHHHHHHHcC
Confidence 467999999999999887654 4678889999999999999999999988764 3221 12222222222211
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHH--------HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcch
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWF--------KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQ 180 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~--------r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~ 180 (430)
+ .+.....++.+++.- . .+...+. .....+|.++...|++++|.+.+.+....... + ...
T Consensus 203 ~--~~~A~~~~~~a~~~~-~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~---~~~ 270 (359)
T 3ieg_A 203 D--HELSLSEVRECLKLD-Q-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-----V---AEY 270 (359)
T ss_dssp C--HHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-----S---HHH
T ss_pred C--HHHHHHHHHHHHhhC-c-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----c---hHH
Confidence 1 333344444443320 0 1111111 22446799999999999999999999887532 2 134
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 181 LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 181 ~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
....+...+.++...|++.+|...++++.... |.. ...+...|.++...|+|.+|..+|-.+.+..
T Consensus 271 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 271 TVRSKERICHCFSKDEKPVEAIRICSEVLQME-----PDN-VNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----ccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55667778899999999999999999987652 211 2345556888899999999999999997643
No 47
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.40 E-value=4.5e-05 Score=73.37 Aligned_cols=196 Identities=7% Similarity=-0.034 Sum_probs=108.7
Q ss_pred HHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh---------------hhhHHHHHH
Q 014143 34 GALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT---------------RNYSEKCIN 98 (430)
Q Consensus 34 ~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~---------------k~~~~k~v~ 98 (430)
.++..+.......+++.......+..++..+.+.|+++++.+++...+... +... -....+..+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 123 (365)
T 4eqf_A 45 VTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQ 123 (365)
T ss_dssp --------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 445555555555443332234567888999999999999999999998864 4211 111122222
Q ss_pred HHHHHhcCCCCC---------------ChhHHHHHHHHHHHHHHHhhhhhhH------HHHhHHHHHHHHHhccHHHHHH
Q 014143 99 NIMDFVSGSASQ---------------NFSLLREFYQTTLKALEEAKNERLW------FKTNLKLCKIWFDMGEYGRMSK 157 (430)
Q Consensus 99 ~il~~~~~~~~~---------------~~~~~~~~~~~~~e~l~~~~~~kl~------~r~~~~La~~~~~~g~~~~A~~ 157 (430)
.++.. .|+. +.+.....++.+++.- + .+...+ ..+...+|.++...|++++|.+
T Consensus 124 ~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 198 (365)
T 4eqf_A 124 RCLEL---QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQN-P-KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198 (365)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-H-HHHCC-------------------CCHHHHHHHH
T ss_pred HHHhc---CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-c-cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHH
Confidence 22222 1220 0111111111111100 0 000011 0122356889999999999999
Q ss_pred HHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhc
Q 014143 158 ILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQ 237 (430)
Q Consensus 158 ~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 237 (430)
++.+....... ......+...+.++...|++.+|..+++++...... ....+...|.++...|+
T Consensus 199 ~~~~al~~~p~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~ 262 (365)
T 4eqf_A 199 LYLEAAHQNGD----------MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE------DYSLWNRLGATLANGDR 262 (365)
T ss_dssp HHHHHHHHSCS----------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCcC----------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCC
Confidence 99999887432 112356667788999999999999999998765321 12345556888889999
Q ss_pred HHHHHHHHHHHHHh
Q 014143 238 WADAATDFFEAFKN 251 (430)
Q Consensus 238 y~~A~~~f~ea~~~ 251 (430)
|.+|...|-++.+.
T Consensus 263 ~~~A~~~~~~al~~ 276 (365)
T 4eqf_A 263 SEEAVEAYTRALEI 276 (365)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998764
No 48
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=98.39 E-value=6.1e-06 Score=75.40 Aligned_cols=183 Identities=13% Similarity=0.083 Sum_probs=123.3
Q ss_pred HHHhhcCHHHHHHHHHHHHh---hhccCC---Cc-hh-H-HHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhh--hcchh
Q 014143 191 MYTETKNNKKLKQLYQKALA---IKSAIP---HP-RI-M-GIIRECGGKMHMAERQWADAATDFFEAFKNYDE--AGNQR 259 (430)
Q Consensus 191 l~~~~~d~~ka~~~l~~a~~---~~~~~~---~~-~~-~-~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~--~~~~~ 259 (430)
-.+..+|+.+|...+.+.+. ..+..+ .+ .. . -.+++.++++....+|..+=-+++.....-|.. .+++.
T Consensus 16 ~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~~s~~ 95 (229)
T 4b0z_A 16 DLYDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLVPSSR 95 (229)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCCCCTT
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCCCCcc
Confidence 34567899999999887642 112111 11 11 2 366788888888777766555555544444543 24456
Q ss_pred HHHHHHHHHHHHHhhCCCCC--CCCcccccc--CCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHH
Q 014143 260 RIQCLKYLVLANMLMESEVN--PFDGQEAKP--YKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIE 335 (430)
Q Consensus 260 ~~~~lky~~l~~lL~~~~~~--~~~~~~~~~--~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~ 335 (430)
...++.|-+|+-++.++..+ .+-...... ..++|.+.....|.+++..|++.+|........ .|...-.++
T Consensus 96 ~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p-----~~~~~~~~~ 170 (229)
T 4b0z_A 96 MGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCN-----FPEFSYFMK 170 (229)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCC-----CGGGHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCc-----cchHHHHHH
Confidence 67788888888776543211 110000000 123566776678999999999999998876532 223344567
Q ss_pred HHHHHHHHHHHHHhcccccccchhhHHhHhCC-ChHHHHHHHHH
Q 014143 336 DLLKNVRTQVLLKLIKPYTRIRIPFISKELNV-PEKDVEQLLVS 378 (430)
Q Consensus 336 ~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l-~~~evE~~l~~ 378 (430)
.|..++|...+..+.+.|++|+++++++.|++ ++++++..+.+
T Consensus 171 ~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~ 214 (229)
T 4b0z_A 171 IVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEE 214 (229)
T ss_dssp HHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHH
Confidence 88999999999999999999999999999999 47889988887
No 49
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.36 E-value=4.6e-05 Score=68.68 Aligned_cols=171 Identities=7% Similarity=0.078 Sum_probs=109.7
Q ss_pred HHHhhccc-CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhh-------
Q 014143 20 CSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN------- 91 (430)
Q Consensus 20 ~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~------- 91 (430)
.|..|... ..+++++|++.|.++++..|.. .+...++..++.+|.+.|+|+++++.|..+++.. |.-...
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHH
Confidence 34444433 3467999999999999887642 3456889999999999999999999999999876 542211
Q ss_pred --------------------------hHHHHHHHHHHHhcCCCCCCh-hHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHH
Q 014143 92 --------------------------YSEKCINNIMDFVSGSASQNF-SLLREFYQTTLKALEEAKNERLWFKTNLKLCK 144 (430)
Q Consensus 92 --------------------------~~~k~v~~il~~~~~~~~~~~-~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~ 144 (430)
...+.+...-..+..-|+... ......+..+... .......+|.
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~---------~~~~~~~~a~ 155 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR---------LAKYEYSVAE 155 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH---------HHHHHHHHHH
Confidence 111111111111221222100 0000000000000 0122357899
Q ss_pred HHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014143 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (430)
Q Consensus 145 ~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~ 210 (430)
+|...|+|++|...++++....++. ...-+.+...+..+..+|++.+|...++.+..
T Consensus 156 ~~~~~~~~~~A~~~~~~~l~~~p~~---------~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 156 YYTERGAWVAVVNRVEGMLRDYPDT---------QATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTS---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHCcCC---------CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 9999999999999999998885421 22346677778899999999999999887654
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.36 E-value=2.9e-05 Score=71.18 Aligned_cols=170 Identities=10% Similarity=0.047 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhh
Q 014143 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (430)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl 134 (430)
..+...+.+++..|+++++++.+...+... +.... ....+...+....+ .+.....++.+++ ...+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~-----~~~~l~~~~~~~~~--~~~A~~~~~~a~~---~~~~~~~ 72 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPY-----IYNRRAVCYYELAK--YDLAQKDIETYFS---KVNATKA 72 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCST-----THHHHHHHHHHTTC--HHHHHHHHHHHHT---TSCTTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHH-----HHHHHHHHHHHHhh--HHHHHHHHHHHHh---ccCchhH
Confidence 456778999999999999999999998865 43221 11222222222122 4455556665554 1123334
Q ss_pred HHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014143 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (430)
Q Consensus 135 ~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~ 214 (430)
.......+|.++...|++++|.+.+.+....... ..+.+...+.++...|++.+|..+++++...
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--- 137 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT------------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--- 137 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc------------cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---
Confidence 3455679999999999999999999999887321 2356777788999999999999999887544
Q ss_pred CCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhh
Q 014143 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (430)
Q Consensus 215 ~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (430)
+|.. ...+...|......++|.+|...|-++.+...
T Consensus 138 --~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 173 (272)
T 3u4t_A 138 --TTTD-PKVFYELGQAYYYNKEYVKADSSFVKVLELKP 173 (272)
T ss_dssp --SCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred --CCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 2221 12333345233345599999999999987653
No 51
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.36 E-value=4.2e-05 Score=71.80 Aligned_cols=189 Identities=12% Similarity=0.071 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|.++++.++.+ ..++..++.++...|+++++.+++...+... +.... ....+...+....
T Consensus 35 ~g~~~~A~~~~~~~l~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-----~~~~l~~~~~~~~ 104 (330)
T 3hym_B 35 NCDFKMCYKLTSVVMEKDPFH----ASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPV-----SWFAVGCYYLMVG 104 (330)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTH-----HHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHHcCCCC----hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHH-----HHHHHHHHHHHhh
Confidence 367999999999999887644 3445567788889999999999999988864 33211 1112222222111
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
...+.....++.+++. ..+ .......+|.++...|++++|.+.+.+....... ....+...
T Consensus 105 -~~~~~A~~~~~~a~~~---~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~l 165 (330)
T 3hym_B 105 -HKNEHARRYLSKATTL---EKT---YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG------------CHLPMLYI 165 (330)
T ss_dssp -SCHHHHHHHHHHHHTT---CTT---CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT------------CSHHHHHH
T ss_pred -hhHHHHHHHHHHHHHh---CCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc------------cHHHHHHH
Confidence 0133334444444331 111 1122346677777777777777777776665321 01223335
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
+.++...|++.+|..+++++..... . ....+...|.++...++|.+|...|.++....
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~~-----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSIAP-----E-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCT-----T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCC-----C-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 5666677777777777776654321 1 12233344666667777777777777776654
No 52
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.34 E-value=0.0002 Score=66.95 Aligned_cols=61 Identities=13% Similarity=-0.072 Sum_probs=47.6
Q ss_pred HHHhhccc-CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 20 CSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 20 ~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
.+..|... ..+++++|++.|+++++..+++ ..++..++.++...|+++++.+++...+...
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 85 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPER----EEAWRSLGLTQAENEKDGLAIIALNHARMLD 85 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34444443 3457999999999999877653 4667788999999999999999999988864
No 53
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.34 E-value=6.9e-05 Score=70.19 Aligned_cols=194 Identities=11% Similarity=0.042 Sum_probs=128.1
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH--------
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNI-------- 100 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~i-------- 100 (430)
.+++++|++.|.+.++..+++ ..++..++.+|...|+++++.+.+...+... +........ ....+
T Consensus 68 ~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~ 141 (327)
T 3cv0_A 68 NEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSV-NLQADVDIDDLNV 141 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC-----------------
T ss_pred cCCHHHHHHHHHHHHhcCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHH-HhHHHHHHHHHHH
Confidence 467999999999999887654 5678889999999999999999999998764 332111111 00000
Q ss_pred --HH-HhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhh
Q 014143 101 --MD-FVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKK 177 (430)
Q Consensus 101 --l~-~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~ 177 (430)
.. .+.. .+ +.+.....++.++ +...+ .......+|.++...|++++|.+.+.+.......
T Consensus 142 ~~~~~~~~~-~~-~~~~A~~~~~~~~---~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--------- 204 (327)
T 3cv0_A 142 QSEDFFFAA-PN-EYRECRTLLHAAL---EMNPN---DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD--------- 204 (327)
T ss_dssp ----CCTTS-HH-HHHHHHHHHHHHH---HHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------
T ss_pred HHHhHHHHH-cc-cHHHHHHHHHHHH---hhCCC---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---------
Confidence 00 0100 00 0111122222222 11111 1244568899999999999999999998877321
Q ss_pred cchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhh
Q 014143 178 GSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (430)
Q Consensus 178 ~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (430)
....+...+.++...|++.+|...++++...... ++ ..+...|.++...|+|.+|...|.++......
T Consensus 205 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 205 ---DAQLWNKLGATLANGNRPQEALDAYNRALDINPG--YV----RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 1355667778899999999999999988765321 12 23445588888999999999999999876655
No 54
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.33 E-value=0.0001 Score=69.72 Aligned_cols=204 Identities=10% Similarity=0.026 Sum_probs=131.1
Q ss_pred CCCHHHHHHHHHHhhcCCc---cchhhh--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 014143 29 ETDPEGALAGFAEVVAMEP---EKAEWG--------FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI 97 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~---~~~~~~--------~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v 97 (430)
.+++++|++.|++.++..+ +..... .+.....+.++...|+++++++.+...+... +... ...
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~ 157 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDA-----ELR 157 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-----HHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCch-----HHH
Confidence 4578999999999998877 432210 1122344899999999999999999998875 4321 222
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchh-
Q 014143 98 NNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQK- 176 (430)
Q Consensus 98 ~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~- 176 (430)
..+...+....+ .+.....++.+++ ..+ -.......+|.++...|++++|...+.+......+. .+..
T Consensus 158 ~~~~~~~~~~~~--~~~A~~~~~~~~~---~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~ 226 (359)
T 3ieg_A 158 ELRAECFIKEGE--PRKAISDLKAASK---LKS---DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH---KRCFA 226 (359)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHT---TCS---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHH
T ss_pred HHHHHHHHHCCC--HHHHHHHHHHHHH---hCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---hHHHH
Confidence 333333322122 3233333333322 111 112345689999999999999999999998774321 0100
Q ss_pred --hcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 177 --KGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 177 --~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
.....+...+..+..+...|++.+|...++++....+. ++......+...|.++...|+|.+|...|-++.+.
T Consensus 227 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 227 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS--VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 00001122344577889999999999999998765432 34455555666788899999999999999998764
No 55
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.32 E-value=0.00022 Score=70.41 Aligned_cols=204 Identities=10% Similarity=0.041 Sum_probs=132.4
Q ss_pred CCCHHHHHHHHHHhhcCCccchh--hhHH---------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAE--WGFK---------ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI 97 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~--~~~k---------~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v 97 (430)
.+++++|++.|.+.++..+++.. .... ....++..+...|+++++++.+...+... +... ...
T Consensus 107 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~ 180 (450)
T 2y4t_A 107 QGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA-----ELR 180 (450)
T ss_dssp TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH-----HHH
T ss_pred cCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh-----HHH
Confidence 45789999999999988775320 1111 23345788999999999999999998864 3211 223
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchh-
Q 014143 98 NNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQK- 176 (430)
Q Consensus 98 ~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~- 176 (430)
..+...+....+ .+.....++.+++. ..+ .......+|.++...|++++|...+.+......+. ....
T Consensus 181 ~~l~~~~~~~g~--~~~A~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~ 249 (450)
T 2y4t_A 181 ELRAECFIKEGE--PRKAISDLKAASKL---KND---NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH---KRCFA 249 (450)
T ss_dssp HHHHHHHHHTTC--GGGGHHHHHHHHHH---HCS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHH
T ss_pred HHHHHHHHHCCC--HHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh---HHHHH
Confidence 333333332122 33344455544432 111 12345589999999999999999999998764321 0100
Q ss_pred --hcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 177 --KGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 177 --~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
.....++.....+..+...|++.+|..+++++...... +|......+.+.|.++...|+|.+|...|-++...
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 250 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS--IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 00001122234478899999999999999998765322 35555567777889999999999999999888653
No 56
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.28 E-value=0.00011 Score=72.62 Aligned_cols=194 Identities=9% Similarity=0.085 Sum_probs=135.1
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|.+.++..+.+ ..++..++.+|.+.|+++++.+.+...++.. +.. ......+...+....
T Consensus 156 ~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~-----~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVCVWD----AELRELRAECFIKEGEPRKAISDLKAASKLK-NDN-----TEAFYKISTLYYQLG 225 (450)
T ss_dssp HTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSC-----HHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC-----HHHHHHHHHHHHHcC
Confidence 467999999999999877643 4677889999999999999999999998864 322 122333333333212
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhh-hHH--------HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcc
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNER-LWF--------KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGS 179 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~k-l~~--------r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~ 179 (430)
+ .+.....++.+++. ..+.. .+. .....+|..+...|++++|.+.+.+....... + ..
T Consensus 226 ~--~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-----~---~~ 292 (450)
T 2y4t_A 226 D--HELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-----I---AE 292 (450)
T ss_dssp C--HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-----S---HH
T ss_pred C--HHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-----c---hH
Confidence 2 33444444444331 11111 111 11245699999999999999999999886432 2 13
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 180 QLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 180 ~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
...+.+...+.++...|++.+|...++++.... |. ....+...|.++...|+|.+|...|-.+.+.
T Consensus 293 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 293 YTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-----PD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-----TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----cc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 446778888899999999999999999987552 21 1234455688888999999999999999764
No 57
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.27 E-value=9.3e-05 Score=62.82 Aligned_cols=154 Identities=11% Similarity=0.036 Sum_probs=113.9
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|.+.++..+++ ..++..++.++...|+++++.+++...+... |
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------------~ 73 (186)
T 3as5_A 21 AGRYSQAVMLLEQVYDADAFD----VDVALHLGIAYVKTGAVDRGTELLERSLADA-----------------------P 73 (186)
T ss_dssp HTCHHHHHHHHTTTCCTTSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------T
T ss_pred hcCHHHHHHHHHHHHHhCccC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------C
Confidence 467899999999988776643 4677888999999999999998887776642 2
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
+ +. .+...+|.++...|++++|.+.+.+....... ....+...
T Consensus 74 ~-~~------------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~ 116 (186)
T 3as5_A 74 D-NV------------------------KVATVLGLTYVQVQKYDLAVPLLIKVAEANPI------------NFNVRFRL 116 (186)
T ss_dssp T-CH------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------CHHHHHHH
T ss_pred C-CH------------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH------------hHHHHHHH
Confidence 2 00 11346788888899999999999988877321 13456667
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
+.++...|++.+|..++.++...... + ...+...|.++...|+|.+|..+|..+.+..
T Consensus 117 a~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 117 GVALDNLGRFDEAIDSFKIALGLRPN--E----GKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHhcCcc--c----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 78888999999999999888654311 1 2344455778888999999999988886643
No 58
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.25 E-value=0.0002 Score=68.43 Aligned_cols=202 Identities=9% Similarity=0.025 Sum_probs=117.5
Q ss_pred CCCCHHHHHH-HHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh---------------h
Q 014143 28 VETDPEGALA-GFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR---------------N 91 (430)
Q Consensus 28 ~~~~~~~Ai~-~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k---------------~ 91 (430)
..+++++|++ .|.+.+...+++......++..++..+...|+++++.+.+...+... +.... .
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3467999999 99999887765433235667789999999999999999999998753 32111 1
Q ss_pred hHHHHHHHHHHHhcCCCCCChhHHHHH---------HHHHHHHHHHh----h-hhhhHH------------HHhHHHHHH
Q 014143 92 YSEKCINNIMDFVSGSASQNFSLLREF---------YQTTLKALEEA----K-NERLWF------------KTNLKLCKI 145 (430)
Q Consensus 92 ~~~k~v~~il~~~~~~~~~~~~~~~~~---------~~~~~e~l~~~----~-~~kl~~------------r~~~~La~~ 145 (430)
...+..+.++.. .|+ +......+ ++.+++.++.+ . +...+. .....++.+
T Consensus 116 ~A~~~~~~al~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 116 LAISALRRCLEL---KPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHH---CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHhc---CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 111222222221 122 01000000 00111111100 0 000000 000036666
Q ss_pred HHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHH
Q 014143 146 WFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIR 225 (430)
Q Consensus 146 ~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~ 225 (430)
+ ..|++++|...+.+....... .....++...+.++...|++.+|...++++..... . ....+
T Consensus 192 ~-~~~~~~~A~~~~~~a~~~~p~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~-~~~~~ 254 (368)
T 1fch_A 192 L-SDSLFLEVKELFLAAVRLDPT----------SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-----N-DYLLW 254 (368)
T ss_dssp H-HHHHHHHHHHHHHHHHHHSTT----------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T-CHHHH
T ss_pred h-hcccHHHHHHHHHHHHHhCcC----------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----C-CHHHH
Confidence 6 899999999999999877431 11346667778899999999999999999876532 1 12344
Q ss_pred HhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 226 ECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 226 ~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
...|.++...|+|.+|...|-.+...
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~ 280 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALEL 280 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55688888999999999999998764
No 59
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.25 E-value=9.9e-05 Score=75.87 Aligned_cols=189 Identities=10% Similarity=0.043 Sum_probs=123.9
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|.++++.++++ ..++..++.+|.+.|+++++.+.+..+++.. +.. ......+...+....
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~-----~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPYN----LDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK-----AVTWLAVGIYYLCVN 387 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS-----HHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHcCccc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc-----HHHHHHHHHHHHHhc
Confidence 567999999999999877643 3456778888899999999999998887653 221 123333444443322
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
+ .+.....++..++. ..+ .......++..|...|++++|.+++.+....... + ...+...
T Consensus 388 ~--~~~A~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~-------~~~~~~l 447 (597)
T 2xpi_A 388 K--ISEARRYFSKSSTM---DPQ---FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-----T-------HLPYLFL 447 (597)
T ss_dssp C--HHHHHHHHHHHHHH---CTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-----C-------SHHHHHH
T ss_pred c--HHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----c-------hHHHHHH
Confidence 2 44455555555431 111 1123447788888888888888888887765321 1 2344555
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhh
Q 014143 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (430)
+..|...|++.+|..+++++...... ++ ..+...|.++...|+|.+|...|-++.+...
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 506 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALFQY--DP----LLLNELGVVAFNKSDMQTAINHFQNALLLVK 506 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCC--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--Ch----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 67788888888888888887654221 22 3455567778888888888888888877654
No 60
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.24 E-value=0.00018 Score=64.33 Aligned_cols=126 Identities=15% Similarity=0.115 Sum_probs=90.9
Q ss_pred CCCHHHHHHHHHHhhcCCc-cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCC
Q 014143 29 ETDPEGALAGFAEVVAMEP-EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~-~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (430)
.+++++|++.|.+.++..+ .+ ..++..++.++...|+++++++++...+...
T Consensus 20 ~~~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----------------------- 72 (228)
T 4i17_A 20 AKNYAVAFEKYSEYLKLTNNQD----SVTAYNCGVCADNIKKYKEAADYFDIAIKKN----------------------- 72 (228)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----------------------
T ss_pred ccCHHHHHHHHHHHHhccCCCC----cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-----------------------
Confidence 4568888888888887765 33 2455557888888888888887777665431
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHH
Q 014143 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (430)
Q Consensus 108 ~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~ 187 (430)
|+ . ......+|.++...|++++|.+.+++.....++ +..-...+.+.+..
T Consensus 73 p~--~-----------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~ 122 (228)
T 4i17_A 73 YN--L-----------------------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG-----NATIEKLYAIYYLK 122 (228)
T ss_dssp CS--H-----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHH
T ss_pred cc--h-----------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-----cHHHHHHHHHHHHH
Confidence 22 0 112458899999999999999999999887432 11001234577888
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 188 EIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 188 ~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
...++...|++.+|...++++...
T Consensus 123 ~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 123 EGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HhHHHHHhccHHHHHHHHHHHHhc
Confidence 889999999999999999988654
No 61
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.22 E-value=6.8e-05 Score=68.40 Aligned_cols=182 Identities=12% Similarity=0.110 Sum_probs=123.1
Q ss_pred HhCCHHHHHHHHHHHHHHHhhhh--hhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHh--hhhhhHHHHhHH
Q 014143 66 RLGKYKEMMDAYREMLTYIKSAV--TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA--KNERLWFKTNLK 141 (430)
Q Consensus 66 ~~~~~~~l~e~~~~l~~~~~~~~--~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~--~~~kl~~r~~~~ 141 (430)
..|+++++.+++++.+..++... .......+...+...+....+ .+.....++.+++..+.. .+......+...
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK--YKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 45777788888888777763222 223344455555554443222 445566666666654332 223344567779
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC--CCch
Q 014143 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI--PHPR 219 (430)
Q Consensus 142 La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~--~~~~ 219 (430)
+|.++...|++++|.+.+.+.........+.++ ......+...+.++...|++.+|..+++++....... .++.
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH----PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 999999999999999999888876532211112 3457788888899999999999999999997764332 2222
Q ss_pred hHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhh
Q 014143 220 IMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (430)
Q Consensus 220 ~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (430)
.....+...|.++...|+|.+|..+|-++.+...
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3445566678999999999999999999987643
No 62
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.22 E-value=0.00047 Score=66.51 Aligned_cols=197 Identities=7% Similarity=-0.084 Sum_probs=130.9
Q ss_pred hhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHh
Q 014143 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (430)
Q Consensus 50 ~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~ 129 (430)
..+...+....+.++...|+++++.+++...+... +.........+...+...+....+ .+.....++.+++.....
T Consensus 10 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~ 86 (373)
T 1hz4_A 10 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGE--LTRSLALMQQTEQMARQH 86 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHhc
Confidence 44556677778899999999999999999988765 322221122222233222221112 444555666665543332
Q ss_pred hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014143 130 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (430)
Q Consensus 130 ~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~ 209 (430)
.+......+...+|.++...|++++|...+.+.........+... ......+...+.++...|++.+|..+++++.
T Consensus 87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (373)
T 1hz4_A 87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL----PMHEFLVRIRAQLLWAWARLDEAEASARSGI 162 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS----THHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC----cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 222223355668999999999999999999988877543221110 2234555667788999999999999999998
Q ss_pred hhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhh
Q 014143 210 AIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (430)
.......++. ....+...|.++...|++.+|..++-++......
T Consensus 163 ~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 163 EVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp HHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 7765544443 3345556788999999999999999998765433
No 63
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.22 E-value=0.00016 Score=73.07 Aligned_cols=193 Identities=11% Similarity=0.096 Sum_probs=116.2
Q ss_pred CCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCC
Q 014143 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (430)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (430)
+++++|++.|.+.++..++. ..++..++.++...|+++++.+.+...+... +... .....+...+....+
T Consensus 290 ~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~-----~~~~~la~~~~~~g~ 359 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLNPEY----PPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENV-----YPYIQLACLLYKQGK 359 (537)
T ss_dssp SCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCS-----HHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCH-----HHHHHHHHHHHHcCC
Confidence 34556666666655554432 3445666666777777777777776666653 3211 111122222221111
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHH
Q 014143 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (430)
Q Consensus 110 ~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~ 189 (430)
.+.....++.+++. ..+. ..+...+|.++...|++++|.+.+.+......... + ....+..+...+
T Consensus 360 --~~~A~~~~~~~~~~---~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---~---~~~~~~~~~~~a 425 (537)
T 3fp2_A 360 --FTESEAFFNETKLK---FPTL---PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE---K---IHVGIGPLIGKA 425 (537)
T ss_dssp --HHHHHHHHHHHHHH---CTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS---S---CSSTTHHHHHHH
T ss_pred --HHHHHHHHHHHHHh---CCCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch---h---hHHHHHHHHHHH
Confidence 22333333333321 1111 12345789999999999999999999887654321 1 123344455666
Q ss_pred HHHHhh----------cCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 190 QMYTET----------KNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 190 ~l~~~~----------~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
.++... |++.+|..+++++..... . ....+...|.++...|+|.+|..+|-.+.+..
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-----R-SEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-----T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-----C-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 777788 999999999999876532 1 12345566888999999999999999998754
No 64
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.21 E-value=9.4e-05 Score=76.04 Aligned_cols=103 Identities=9% Similarity=0.029 Sum_probs=78.4
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014143 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (430)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~ 217 (430)
+...++.++...|++++|.+++.+......+.+ .+ .......+...+.++...|++.+|...++++....
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~---p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 546 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ--SN---EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS----- 546 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CC---SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc--cc---hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----
Confidence 355889999999999999999999877643211 11 12236788888899999999999999999987653
Q ss_pred chhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 218 ~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
|. ....+...|.++...|+|.+|...|-++.+.
T Consensus 547 p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 547 TN-DANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 21 1234555678888999999999999998764
No 65
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.20 E-value=0.00019 Score=69.61 Aligned_cols=187 Identities=12% Similarity=0.134 Sum_probs=98.8
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|.+.++.+|+. ..+...++.++...|+++++.+.+...+... +... .....+...+....
T Consensus 114 ~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~-----~~~~~l~~~~~~~g 183 (388)
T 1w3b_A 114 AGDMEGAVQAYVSALQYNPDL----YCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFA-----VAWSNLGCVFNAQG 183 (388)
T ss_dssp HSCSSHHHHHHHHHHHHCTTC----THHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCH-----HHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCH-----HHHHHHHHHHHHcC
Confidence 356788888888888776643 3455677888888888888888888777653 3211 12222222222211
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
+.+.....++.+++. .+ -.......+|.++...|++++|...+.+.....++ ....+...
T Consensus 184 --~~~~A~~~~~~al~~-~p-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l 243 (388)
T 1w3b_A 184 --EIWLAIHHFEKAVTL-DP-----NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN------------HAVVHGNL 243 (388)
T ss_dssp --CHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT------------CHHHHHHH
T ss_pred --CHHHHHHHHHHHHhc-CC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC------------CHHHHHHH
Confidence 133334444444331 00 11123345666666666666666666555544210 12334444
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
+.++...|++.+|...++++...... +| ..+...|.++...|++.+|...|-++.+.
T Consensus 244 ~~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 244 ACVYYEQGLIDLAIDTYRRAIELQPH--FP----DAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCSS--CH----HHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC--CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55666666666666666665443211 11 12233355555666666666666666543
No 66
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=0.00016 Score=71.20 Aligned_cols=191 Identities=13% Similarity=0.007 Sum_probs=137.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhhhh------------hhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHH
Q 014143 60 TVKLYYRLGKYKEMMDAYREMLTYIKSAV------------TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALE 127 (430)
Q Consensus 60 l~~l~~~~~~~~~l~e~~~~l~~~~~~~~------------~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~ 127 (430)
-++-+.+.|+++++.+.|..+++.. +.. .....++++.++...+....+ .+...+.+..+++...
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~--~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKD-SSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA--KDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSC-CCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHTHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC-cccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHH
Confidence 3566788999999999999998864 321 123345667777777665333 5566667776666544
Q ss_pred HhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 014143 128 EAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 207 (430)
Q Consensus 128 ~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~ 207 (430)
..++.+.--.+...++.++...|++++|.+++.+....+.... + ......++...+.++...|++.+|..++..
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK---R---VFLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS---C---CSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC---c---cHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 4322222223444678888888999999999988877654321 1 134567777888999999999999999999
Q ss_pred HHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcchh
Q 014143 208 ALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQR 259 (430)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~ 259 (430)
+........+......++...|.++...+||..|...+-.+.........+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 212 (434)
T 4b4t_Q 161 LLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPT 212 (434)
T ss_dssp HHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCch
Confidence 8776666666556677788889999999999999999999877665544443
No 67
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.19 E-value=0.00025 Score=64.66 Aligned_cols=188 Identities=11% Similarity=0.075 Sum_probs=118.6
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
++++++|++.|.++++..+.+.+....++..++.++...|+++++.+++...+... +... .....+...+....
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~-----~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMP-----EVFNYLGIYLTQAG 91 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCH-----HHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcH-----HHHHHHHHHHHHcc
Confidence 34699999999999987543334457899999999999999999999999998875 4321 12223333332212
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
+ .+.....++.+++. ..+ .......+|.++...|++++|.+.+.+......+ + . .... .
T Consensus 92 ~--~~~A~~~~~~al~~---~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-----~----~-~~~~---~ 150 (275)
T 1xnf_A 92 N--FDAAYEAFDSVLEL---DPT---YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-----D----P-FRSL---W 150 (275)
T ss_dssp C--HHHHHHHHHHHHHH---CTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C----H-HHHH---H
T ss_pred C--HHHHHHHHHHHHhc---Ccc---ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----C----h-HHHH---H
Confidence 2 33444455544442 111 1234568999999999999999999999887432 1 1 1111 1
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
..++...|++.+|...+.++....+. ++... ..+.++...+++.+|...|.+++.
T Consensus 151 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~a~~~~~~~~~ 205 (275)
T 1xnf_A 151 LYLAEQKLDEKQAKEVLKQHFEKSDK--EQWGW-----NIVEFYLGNISEQTLMERLKADAT 205 (275)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHSCC--CSTHH-----HHHHHHTTSSCHHHHHHHHHHHCC
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCc--chHHH-----HHHHHHHHhcCHHHHHHHHHHHhc
Confidence 12346678999999998777544221 11111 123344455666777777766654
No 68
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.18 E-value=0.00015 Score=70.39 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
.+++++|+..+...++.+|.. ..++..++.+|...|+++++.+.|.+.+...
T Consensus 46 ~~~~~~a~~~~~~a~~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 97 (388)
T 1w3b_A 46 CRRLDRSAHFSTLAIKQNPLL----AEAYSNLGNVYKERGQLQEAIEHYRHALRLK 97 (388)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 457888888888888776643 5677888888888888888888888887754
No 69
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.18 E-value=0.00011 Score=74.27 Aligned_cols=192 Identities=8% Similarity=0.022 Sum_probs=124.5
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|.+.++.+++ ..++..++.++...|+++++.+++...+... +... .....+...+....
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPT-----PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYP-----PTYYHRGQMYFILQ 324 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCH-----HHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHhcCCC-----chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCH-----HHHHHHHHHHHhcC
Confidence 45688999999999887654 4667788999999999999999999888765 4321 12222333322212
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
+ .+.....++.+++. ..+ .......+|.++...|++++|...+.+....... + .+.+...
T Consensus 325 ~--~~~A~~~~~~a~~~---~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~-------~~~~~~l 384 (537)
T 3fp2_A 325 D--YKNAKEDFQKAQSL---NPE---NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-----L-------PEVPTFF 384 (537)
T ss_dssp C--HHHHHHHHHHHHHH---CTT---CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------THHHHHH
T ss_pred C--HHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C-------hHHHHHH
Confidence 2 33344444444331 111 1133457899999999999999999888877321 1 2345555
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhh----------hcHHHHHHHHHHHHHh
Q 014143 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAE----------RQWADAATDFFEAFKN 251 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~----------~~y~~A~~~f~ea~~~ 251 (430)
+.++...|++.+|...++++....................|.++... |+|.+|..+|-.+...
T Consensus 385 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 78888999999999999988766544333222211222335555566 8999999999888764
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.17 E-value=4e-05 Score=81.86 Aligned_cols=152 Identities=13% Similarity=0.109 Sum_probs=107.0
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|++.++.+++. ..++.+++.+|.+.|+++++++.|++.+..- |
T Consensus 22 ~G~~~eAi~~~~kAl~l~P~~----~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-----------------------P 74 (723)
T 4gyw_A 22 QGNIEEAVRLYRKALEVFPEF----AAAHSNLASVLQQQGKLQEALMHYKEAIRIS-----------------------P 74 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------T
T ss_pred cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------C
Confidence 456888888888888877654 4567788888888888888888887776642 2
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
+ . ......||.++.+.|++++|.+.+++....-. ...+.+...
T Consensus 75 ~--~-----------------------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P------------~~~~a~~~L 117 (723)
T 4gyw_A 75 T--F-----------------------ADAYSNMGNTLKEMQDVQGALQCYTRAIQINP------------AFADAHSNL 117 (723)
T ss_dssp T--C-----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------TCHHHHHHH
T ss_pred C--C-----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------CCHHHHHHH
Confidence 2 0 01234788888888999999888888777621 134566777
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
+.++..+|++.+|...|++|.++.... ...+...|.++...++|.+|...|..+.+
T Consensus 118 g~~~~~~g~~~eAi~~~~~Al~l~P~~------~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 118 ASIHKDSGNIPEAIASYRTALKLKPDF------PDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 788888899999999888887653221 12233346667777888888877777754
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.17 E-value=0.00016 Score=73.18 Aligned_cols=190 Identities=12% Similarity=0.077 Sum_probs=124.6
Q ss_pred CCCH-HHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCC
Q 014143 29 ETDP-EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (430)
Q Consensus 29 ~~~~-~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (430)
.+++ ++|++.|++.++.+++. ..++..++.+|...|+++++.++|...+... +. ......+...+...
T Consensus 115 ~g~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~------~~~~~~lg~~~~~~ 183 (474)
T 4abn_A 115 TPDYSPEAEVLLSKAVKLEPEL----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHC-KN------KVSLQNLSMVLRQL 183 (474)
T ss_dssp SSSCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-CC------HHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC------HHHHHHHHHHHHHh
Confidence 4578 99999999999988754 4678899999999999999999999998763 32 24444454444432
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh-hhhhHHHHhHHHHHHHHHh--------ccHHHHHHHHHHHHhhccCCCCCcchhhc
Q 014143 108 ASQNFSLLREFYQTTLKALEEAK-NERLWFKTNLKLCKIWFDM--------GEYGRMSKILKELHKSCQREDGTDDQKKG 178 (430)
Q Consensus 108 ~~~~~~~~~~~~~~~~e~l~~~~-~~kl~~r~~~~La~~~~~~--------g~~~~A~~~l~el~~~~~~~~~~~d~~~~ 178 (430)
...........++.+.+.++.+- -..-.......+|.+|... |++++|.+.+++....... .
T Consensus 184 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---------~ 254 (474)
T 4abn_A 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK---------A 254 (474)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG---------G
T ss_pred ccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC---------c
Confidence 11111112223333333333210 0001113445889999888 9999999999999887321 0
Q ss_pred chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHH
Q 014143 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATD 244 (430)
Q Consensus 179 ~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~ 244 (430)
....+.+...+.++...|++.+|...++++....... + ..+...|.++...+++.+|...
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~----~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW--P----EPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--H----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--H----HHHHHHHHHHHHHHHHHHHHHH
Confidence 1345677788899999999999999999997654221 1 2233345666666666666543
No 72
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.12 E-value=0.00017 Score=72.19 Aligned_cols=118 Identities=14% Similarity=0.081 Sum_probs=83.3
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHhhhcc
Q 014143 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE---TKNNKKLKQLYQKALAIKSA 214 (430)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~---~~d~~ka~~~l~~a~~~~~~ 214 (430)
....+|.++...|++++|...+.+........+ + .......+...+.++.. .|++.+|...++++.....
T Consensus 374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~- 446 (514)
T 2gw1_A 374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLD---G---IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP- 446 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS---S---CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc---h---HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-
Confidence 445889999999999999999999887654321 1 12224567777888999 9999999999999876532
Q ss_pred CCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q 014143 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVL 269 (430)
Q Consensus 215 ~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~l 269 (430)
. ....+...|.++...|+|.+|..+|.++.+.. ..++.....+.+.-.
T Consensus 447 ----~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~ 494 (514)
T 2gw1_A 447 ----R-SEQAKIGLAQMKLQQEDIDEAITLFEESADLA--RTMEEKLQAITFAEA 494 (514)
T ss_dssp ----T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSHHHHHHHHHHHHH
T ss_pred ----c-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 1 12334556888889999999999999997743 223344444444433
No 73
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.09 E-value=0.0012 Score=59.18 Aligned_cols=183 Identities=9% Similarity=0.088 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhh-h
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK-N 131 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~-~ 131 (430)
...++..++..+...|+++++++++...+... .. ......+...+....+ .+.....++.+++.-.... +
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~------~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~ 74 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD------ITYLNNRAAAEYEKGE--YETAISTLNDAVEQGREMRAD 74 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC------THHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc------HHHHHHHHHHHHHccc--HHHHHHHHHHHHHhCcccccc
Confidence 46788999999999999999999999998863 11 1223333333322122 4445555555555322211 1
Q ss_pred hhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCC------c------c--hhhcchHHHHHHHHHHHHHhhcC
Q 014143 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT------D------D--QKKGSQLLEVYAIEIQMYTETKN 197 (430)
Q Consensus 132 ~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~------~------d--~~~~~~~~e~~l~~~~l~~~~~d 197 (430)
......+...+|.++...|++++|.+.+.+.........-- . + ..........+...+.++...|+
T Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 75 YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 11224666799999999999999999999888753210000 0 0 00011234455555666666677
Q ss_pred HHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 198 NKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 198 ~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
+.+|...++++...... ....+...|.++...|+|.+|..+|-++.+
T Consensus 155 ~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77777766666543211 112334446666666677777766666654
No 74
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.04 E-value=0.0001 Score=73.78 Aligned_cols=192 Identities=10% Similarity=0.079 Sum_probs=123.6
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|.+.++..++ ..++..++.++...|+++++.+.+...+... +.... ....+...+....
T Consensus 250 ~~~~~~A~~~~~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-----~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELFPR-----VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSS-----VYYHRGQMNFILQ 318 (514)
T ss_dssp SSCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTH-----HHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhhCcc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHH-----HHHHHHHHHHHhC
Confidence 45788899998888877654 5677888888999999999988888887754 32111 2222222222211
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
+ .+.....++.+++. ..+ .......+|.++...|++++|...+.++...... ..+.+...
T Consensus 319 ~--~~~A~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l 378 (514)
T 2gw1_A 319 N--YDQAGKDFDKAKEL---DPE---NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE------------APEVPNFF 378 (514)
T ss_dssp C--TTHHHHHHHHHHHT---CSS---CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT------------CSHHHHHH
T ss_pred C--HHHHHHHHHHHHHh---Chh---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc------------CHHHHHHH
Confidence 2 22334444444331 111 1123457888888899999999888888776321 12455566
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhh---hhcHHHHHHHHHHHHHh
Q 014143 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA---ERQWADAATDFFEAFKN 251 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~y~~A~~~f~ea~~~ 251 (430)
+.++...|++.+|..++.++.......++.......+...|.++.. .|+|.+|...|-.+...
T Consensus 379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 7788888999999999888876554433222223344555777777 88999998888888653
No 75
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.04 E-value=0.0002 Score=59.15 Aligned_cols=116 Identities=9% Similarity=0.026 Sum_probs=94.1
Q ss_pred HHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 014143 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 215 (430)
Q Consensus 136 ~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~ 215 (430)
..+...+|.++...|++++|.+.+.+......... + .......+...+.++...|++.+|..+++++.......
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG---D---KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC---C---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 35567899999999999999999998887754321 2 13456677788899999999999999999998877777
Q ss_pred CCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcc
Q 014143 216 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN 257 (430)
Q Consensus 216 ~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~ 257 (430)
.++...+......|.++...++|.+|..+|.++.......++
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 124 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc
Confidence 777666777777899999999999999999999877655444
No 76
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.03 E-value=0.00023 Score=61.86 Aligned_cols=151 Identities=11% Similarity=0.086 Sum_probs=111.5
Q ss_pred CCCHHHHHHHHHHhhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC
Q 014143 29 ETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (430)
.+++++|++.|.+.++... .+..+...++..++.+|...|+++++.+++...+... ...
T Consensus 39 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~------------------ 99 (203)
T 3gw4_A 39 MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELL-ASL------------------ 99 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHS------------------
T ss_pred hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHc------------------
Confidence 5679999999999987432 2345567899999999999999999999999888875 221
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHH
Q 014143 107 SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (430)
Q Consensus 107 ~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l 186 (430)
++ +. .....+...+|.++...|++++|...+.+......... + .......+.
T Consensus 100 -~~-~~--------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~ 151 (203)
T 3gw4_A 100 -PE-DP--------------------LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD---D---QVAIACAFR 151 (203)
T ss_dssp -CC-CH--------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT---C---HHHHHHHHH
T ss_pred -Cc-cH--------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc---c---hHHHHHHHH
Confidence 21 00 00112345889999999999999999998887654321 2 133456667
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHH
Q 014143 187 IEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRE 226 (430)
Q Consensus 187 ~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~ 226 (430)
..+.++...|++.+|..+++++..+.....++...+....
T Consensus 152 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 191 (203)
T 3gw4_A 152 GLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMT 191 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 7788999999999999999999887777766655554433
No 77
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.94 E-value=0.00036 Score=61.99 Aligned_cols=158 Identities=15% Similarity=0.166 Sum_probs=104.6
Q ss_pred CCCCHHHHHHHHHHhhcCCccchh-hh-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAE-WG-----------FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK 95 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~-~~-----------~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k 95 (430)
..+++++|++.|.+.++.+|++.. |. .+....++.+|...|+++++++.|...+...
T Consensus 16 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------- 84 (208)
T 3urz_A 16 EAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA----------- 84 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----------
Confidence 356799999999999998875322 11 1122338999999999999999998887753
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcch
Q 014143 96 CINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQ 175 (430)
Q Consensus 96 ~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~ 175 (430)
|+ +. .....+|.++...|++++|...+.++...-++
T Consensus 85 ------------p~-~~------------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------- 120 (208)
T 3urz_A 85 ------------PN-NV------------------------DCLEACAEMQVCRGQEKDALRMYEKILQLEAD------- 120 (208)
T ss_dssp ------------TT-CH------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-------
T ss_pred ------------CC-CH------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------
Confidence 33 00 11347899999999999999999999887321
Q ss_pred hhcchHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 176 KKGSQLLEVYAIEIQMYTETKN--NKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 176 ~~~~~~~e~~l~~~~l~~~~~d--~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
..+.+.....++...++ ...+...+.++. .++|...+ +...|..+...++|.+|..+|-++.+.+
T Consensus 121 -----~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~a--~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 121 -----NLAANIFLGNYYYLTAEQEKKKLETDYKKLS-----SPTKMQYA--RYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCHHHHH--HHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred -----CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-----CCCchhHH--HHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 12344444555544443 333333333321 12232222 3345888888999999999999998754
No 78
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.91 E-value=0.00055 Score=61.04 Aligned_cols=154 Identities=14% Similarity=0.118 Sum_probs=108.5
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|.++++..+.+ ..++..++.++...|+++++.+++.+.+... +... .....+...+....
T Consensus 70 ~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~~~~a~~~~~~~ 139 (243)
T 2q7f_A 70 VNELERALAFYDKALELDSSA----ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENG-----DLFYMLGTVLVKLE 139 (243)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSH-----HHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHHHHcCCcc----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCH-----HHHHHHHHHHHHhc
Confidence 467999999999999887643 5677889999999999999999999998875 3221 12222333222212
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
+ .+.....++.+++. ..+ .......+|.++...|++++|.+.+.+....... ....+...
T Consensus 140 ~--~~~A~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l 199 (243)
T 2q7f_A 140 Q--PKLALPYLQRAVEL---NEN---DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG------------HADAFYNA 199 (243)
T ss_dssp C--HHHHHHHHHHHHHH---CTT---CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT------------CHHHHHHH
T ss_pred c--HHHHHHHHHHHHHh---CCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------------cHHHHHHH
Confidence 2 33444444444332 111 1234568999999999999999999998877321 23466777
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 189 IQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
+.++...|++.+|..+++++....
T Consensus 200 a~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 200 GVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHccCHHHHHHHHHHHHccC
Confidence 889999999999999999987653
No 79
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.90 E-value=0.00085 Score=61.34 Aligned_cols=142 Identities=8% Similarity=0.101 Sum_probs=100.8
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYR--------LGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNI 100 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~--------~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~i 100 (430)
.+++++|++.|.++++..|++. ....++..++.++.. .|+++++++.+..++... +.-... .
T Consensus 65 ~~~~~~A~~~~~~~l~~~p~~~-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~--~------ 134 (261)
T 3qky_A 65 NKEYLLAASEYERFIQIYQIDP-RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELV--D------ 134 (261)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCT-THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTH--H------
T ss_pred hCcHHHHHHHHHHHHHHCCCCc-hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhH--H------
Confidence 4679999999999999877532 246889999999999 999999999999998875 431100 0
Q ss_pred HHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcch
Q 014143 101 MDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQ 180 (430)
Q Consensus 101 l~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~ 180 (430)
.....+..+... .......+|.+|...|+|++|...++++.....+. ..
T Consensus 135 -------------~a~~~~~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~ 183 (261)
T 3qky_A 135 -------------DATQKIRELRAK---------LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT---------PW 183 (261)
T ss_dssp -------------HHHHHHHHHHHH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS---------TT
T ss_pred -------------HHHHHHHHHHHH---------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC---------ch
Confidence 000111111111 11224689999999999999999999998875421 22
Q ss_pred HHHHHHHHHHHHHhh----------cCHHHHHHHHHHHHhh
Q 014143 181 LLEVYAIEIQMYTET----------KNNKKLKQLYQKALAI 211 (430)
Q Consensus 181 ~~e~~l~~~~l~~~~----------~d~~ka~~~l~~a~~~ 211 (430)
..+.+...+.++..+ |++.+|...++++...
T Consensus 184 ~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 184 ADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 445666667777766 8899999999887654
No 80
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.88 E-value=0.00012 Score=74.59 Aligned_cols=140 Identities=11% Similarity=0.035 Sum_probs=102.6
Q ss_pred CCCCHHHHHHHHHHhhcCCc----cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 014143 28 VETDPEGALAGFAEVVAMEP----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDF 103 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~----~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~ 103 (430)
.++++++|+..+++.++... ++-.++.+++.+|+.+|..+|+|+++..++.+.+...+...
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l--------------- 385 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLY--------------- 385 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS---------------
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHc---------------
Confidence 46789999999999998643 33456899999999999999999999999999988762221
Q ss_pred hcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHH
Q 014143 104 VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (430)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e 183 (430)
. |+.+. + .....+||.+|...|+|++|..++++........-|.+- ....+
T Consensus 386 -G--~~Hp~------------~----------a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H----p~~~~ 436 (490)
T 3n71_A 386 -H--HNNAQ------------L----------GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH----PITKD 436 (490)
T ss_dssp -C--TTCHH------------H----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS----HHHHH
T ss_pred -C--CCCHH------------H----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC----hHHHH
Confidence 1 22110 0 112459999999999999999999887776544445432 23445
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 184 VYAIEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 184 ~~l~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
......+.+..++.+..|...|..++..
T Consensus 437 ~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 437 LEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556677788888888888887643
No 81
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.88 E-value=0.003 Score=55.19 Aligned_cols=169 Identities=9% Similarity=-0.075 Sum_probs=115.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 132 (430)
...++..++.++...|+++++.+.+...+... +... .....+...+....+ .+.....++.+++. ..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~---~~~- 74 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNE-----LAWLVRAEIYQYLKV--NDKAQESFRQALSI---KPD- 74 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-----HHHHHHHHHHHHTTC--HHHHHHHHHHHHHH---CTT-
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccch-----HHHHHHHHHHHHcCC--hHHHHHHHHHHHHh---CCC-
Confidence 46788899999999999999999999998865 4321 122223332222122 33444455544432 111
Q ss_pred hhHHHHhHHHHHHHHHh-ccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 133 RLWFKTNLKLCKIWFDM-GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~-g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
...+...+|.++... |++++|.+.+.+... ... + ......+...+.++...|++.+|..+++++...
T Consensus 75 --~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~-----~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 142 (225)
T 2vq2_A 75 --SAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPT-----Y----PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA 142 (225)
T ss_dssp --CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STT-----C----SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcC-----C----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 112345899999999 999999999999887 111 1 223566777788999999999999999988754
Q ss_pred hccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 212 KSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 212 ~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
... + ...+...|.++...|+|.+|...|.++...
T Consensus 143 ~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 143 QPQ--F----PPAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp STT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCC--C----chHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 321 1 223445578888999999999999888764
No 82
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.85 E-value=0.00033 Score=57.06 Aligned_cols=101 Identities=11% Similarity=0.136 Sum_probs=82.7
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC-C
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP-H 217 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~-~ 217 (430)
...||..++..|+|++|.+.+.+.....+ .....+...+.+|..+|++.+|...++++..+..... +
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p------------~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDP------------SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence 34899999999999999999999887732 1245677788899999999999999999987765543 3
Q ss_pred chhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 218 ~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
+...+..+...|.++...++|.+|..+|-.+...
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4456667777899999999999999999998763
No 83
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.85 E-value=0.0017 Score=55.65 Aligned_cols=133 Identities=17% Similarity=0.099 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 132 (430)
+..++.++|.+|...|+++++++.|++.++.- |+ +.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-----------------------p~-~~-------------------- 39 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-----------------------PN-NV-------------------- 39 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------TT-CH--------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------CC-CH--------------------
Confidence 45678899999999999999999999887752 33 11
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
.....+|.+|...|++++|...+......... ....+......+...+++..+...+.++....
T Consensus 40 ----~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~ 103 (184)
T 3vtx_A 40 ----ETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT------------SAEAYYILGSANFMIDEKQAAIDALQRAIALN 103 (184)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 11347899999999999999999998877431 23455566778889999999999999887543
Q ss_pred ccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
+. ++ ..+...|.++...|+|.+|...|.++.+.
T Consensus 104 ~~--~~----~~~~~lg~~~~~~g~~~~A~~~~~~~l~~ 136 (184)
T 3vtx_A 104 TV--YA----DAYYKLGLVYDSMGEHDKAIEAYEKTISI 136 (184)
T ss_dssp TT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cc--ch----HHHHHHHHHHHHhCCchhHHHHHHHHHHh
Confidence 21 11 23445588899999999999999888653
No 84
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.83 E-value=0.00033 Score=72.26 Aligned_cols=153 Identities=11% Similarity=0.063 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|++.++.++++ ..++..++.+|...|+++++.+.|++.+... |
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------------------p 54 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD----FVAWLMLADAELGMGDTTAGEMAVQRGLALH-----------------------P 54 (568)
T ss_dssp -------------------CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-----------------------T
T ss_pred CccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------C
Confidence 357899999999999887654 4678899999999999999999998877642 2
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
+ +. .....+|.++...|++++|.+.+++......+ ..+.+...
T Consensus 55 ~-~~------------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l 97 (568)
T 2vsy_A 55 G-HP------------------------EAVARLGRVRWTQQRHAEAAVLLQQASDAAPE------------HPGIALWL 97 (568)
T ss_dssp T-CH------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHH
T ss_pred C-CH------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------------CHHHHHHH
Confidence 2 00 01347788888888888888888887776221 13455666
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhh---hcHHHHHHHHHHHHHh
Q 014143 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAE---RQWADAATDFFEAFKN 251 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~y~~A~~~f~ea~~~ 251 (430)
+.++...|++.+|..+++++...... ++ ..+...|.++... +++.+|...|.++.+.
T Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 98 GHALEDAGQAEAAAAAYTRAHQLLPE--EP----YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 77788888888888888887655321 11 2233346666677 8888888888887654
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.83 E-value=0.0014 Score=58.39 Aligned_cols=136 Identities=15% Similarity=0.130 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhh
Q 014143 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (430)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl 134 (430)
.++...|.++...|+++++++.|...+... +. ++ .
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~--------------------~~--~---------------------- 42 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NN--------------------QD--S---------------------- 42 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TT--------------------CC--H----------------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CC--------------------CC--c----------------------
Confidence 678889999999999999999999988764 20 12 1
Q ss_pred HHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014143 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (430)
Q Consensus 135 ~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~ 214 (430)
.....+|..+...|++++|.+.+.+.....+ .....+...+.++...|++.+|...++++....+.
T Consensus 43 --~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 108 (228)
T 4i17_A 43 --VTAYNCGVCADNIKKYKEAADYFDIAIKKNY------------NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG 108 (228)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC------------SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred --HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc------------chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 0123588999999999999999999887621 24567778889999999999999999998765432
Q ss_pred CCCchh---HHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 215 IPHPRI---MGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 215 ~~~~~~---~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
++.. .+..+...|.++...|+|.+|...|..+.+.
T Consensus 109 --~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 109 --NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred --cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 2322 3455677899999999999999999999763
No 86
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.82 E-value=0.002 Score=57.92 Aligned_cols=168 Identities=13% Similarity=0.064 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 132 (430)
...++..++.++...|+++++.+.+...+... +.. ......+...+....+ .+.....++.+++. ..+
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~-----~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~---~~~- 103 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSS-----ADAHAALAVVFQTEME--PKLADEEYRKALAS---DSR- 103 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTC-----HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH---CTT-
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCh-----HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHH---CcC-
Confidence 47888999999999999999999999998864 322 1222223333222122 33444444444332 111
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
...+...+|.++...|++++|.+++.+... ... + ......+...+.++...|++.+|..++.++....
T Consensus 104 --~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~-----~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (252)
T 2ho1_A 104 --NARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTL-----Y----PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171 (252)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTT-----C----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-Ccc-----C----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 123456889999999999999999998876 100 1 2235666777888999999999999999887653
Q ss_pred ccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
.. + ...+...|.++...++|.+|...|..+.+
T Consensus 172 ~~--~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 203 (252)
T 2ho1_A 172 RN--Q----PSVALEMADLLYKEREYVPARQYYDLFAQ 203 (252)
T ss_dssp SC--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cc--c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 1 23345567888889999999998888765
No 87
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.81 E-value=0.00077 Score=68.09 Aligned_cols=186 Identities=13% Similarity=0.044 Sum_probs=127.8
Q ss_pred HHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCC
Q 014143 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKY-KEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ 110 (430)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~-~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~ 110 (430)
.++|++.+.+.....++ ...++..++.++...|++ +++.++|.+.++.- +... .....+...+....+
T Consensus 84 ~~~al~~l~~~~~~~~~----~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~-----~a~~~lg~~~~~~g~- 152 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQV----EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELV-----EAWNQLGEVYWKKGD- 152 (474)
T ss_dssp HHHHHHHHHHHHTTCCC----CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCH-----HHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhccCch----hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCH-----HHHHHHHHHHHHcCC-
Confidence 56677777766555443 367889999999999999 99999999999875 4322 222233333322112
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHh---------ccHHHHHHHHHHHHhhccCCCCCcchhhcchH
Q 014143 111 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDM---------GEYGRMSKILKELHKSCQREDGTDDQKKGSQL 181 (430)
Q Consensus 111 ~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~---------g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~ 181 (430)
.+.....++.+++. ..+ ......+|.++... |++++|.+.+.+......+ .
T Consensus 153 -~~~A~~~~~~al~~---~p~----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------------~ 212 (474)
T 4abn_A 153 -VTSAHTCFSGALTH---CKN----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL------------D 212 (474)
T ss_dssp -HHHHHHHHHHHHTT---CCC----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT------------C
T ss_pred -HHHHHHHHHHHHhh---CCC----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC------------C
Confidence 33444444444431 112 24566899999999 9999999999999887321 1
Q ss_pred HHHHHHHHHHHHhh--------cCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 182 LEVYAIEIQMYTET--------KNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 182 ~e~~l~~~~l~~~~--------~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
...+...+.++... |++.+|..+++++...... ..-....+...|.++...|+|.+|...|.++.+.
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK---ASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG---GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC---cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555666777777 8999999999999876321 0123445566788999999999999999998764
No 88
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.77 E-value=0.0024 Score=59.95 Aligned_cols=194 Identities=12% Similarity=0.117 Sum_probs=120.7
Q ss_pred HHhhcc-cCCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 014143 21 SILEKG-LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINN 99 (430)
Q Consensus 21 ~~~ak~-~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~ 99 (430)
++.++. +..+++++|+..++.. + .+ ...++..++..+...|+++++++.+..++.. +..+.+...-..
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~-----~-~~-~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~--~~~P~~~~~~~~-- 106 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPS-----S-AP-ELQAVRMFAEYLASHSRRDAIVAELDREMSR--SVDVTNTTFLLM-- 106 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTT-----S-CH-HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS--CCCCSCHHHHHH--
T ss_pred HHHHHHHHHCCCHHHHHHHhccc-----C-Ch-hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc--ccCCCCHHHHHH--
Confidence 444554 3456799999877542 1 12 3688889999999999999999999988763 101111111111
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcc
Q 014143 100 IMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGS 179 (430)
Q Consensus 100 il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~ 179 (430)
+...+.. .+ +. +.+++.++. .-.......+|.++...|++++|.+.++++...-. + .
T Consensus 107 la~~~~~-~g-~~-------~~Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p------~----~ 163 (291)
T 3mkr_A 107 AASIYFY-DQ-NP-------DAALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDE------D----A 163 (291)
T ss_dssp HHHHHHH-TT-CH-------HHHHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------T----C
T ss_pred HHHHHHH-CC-CH-------HHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc------C----c
Confidence 1111111 11 12 222233222 11223455889999999999999999999987732 1 1
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhh
Q 014143 180 QLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (430)
Q Consensus 180 ~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (430)
....+......++...|++.+|...++++.... |. ...++...|.++...|+|.+|...|.++......
T Consensus 164 ~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-----p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 164 TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-----SP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-----CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-----CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 122222223345556688999999999886542 11 1234455688889999999999999999876544
No 89
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.77 E-value=0.0052 Score=56.22 Aligned_cols=176 Identities=16% Similarity=0.162 Sum_probs=121.7
Q ss_pred CCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc
Q 014143 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYR----LGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVS 105 (430)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~----~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~ 105 (430)
+++++|++.|++.++.. + ..++..++.+|.. .|+++++.+++.+....- .......+...+.
T Consensus 20 ~~~~~A~~~~~~a~~~~--~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~ 85 (273)
T 1ouv_A 20 KDFTQAKKYFEKACDLK--E----NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------YSNGCHLLGNLYY 85 (273)
T ss_dssp TCHHHHHHHHHHHHHTT--C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC--C----HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHh
Confidence 48999999999998732 2 3678889999999 999999999999887642 1122223333332
Q ss_pred C----CCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHH----hccHHHHHHHHHHHHhhccCCCCCcchhh
Q 014143 106 G----SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKK 177 (430)
Q Consensus 106 ~----~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~----~g~~~~A~~~l~el~~~~~~~~~~~d~~~ 177 (430)
. .. +.+.....++.+.+. . .......||.+|.. .|++++|.+.+......- +
T Consensus 86 ~g~~~~~--~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~--- 145 (273)
T 1ouv_A 86 SGQGVSQ--NTNKALQYYSKACDL----K----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-------D--- 145 (273)
T ss_dssp HTSSSCC--CHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-------C---
T ss_pred CCCCccc--CHHHHHHHHHHHHHc----C----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-------c---
Confidence 2 12 244444555554431 1 22445689999999 999999999999887651 1
Q ss_pred cchHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhh----hhcHHHHHHHHHHHH
Q 014143 178 GSQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA----ERQWADAATDFFEAF 249 (430)
Q Consensus 178 ~~~~~e~~l~~~~l~~~----~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~y~~A~~~f~ea~ 249 (430)
.+.+.....++.. .+++.+|..+++++.... ++. .....|.++.. .++|.+|..+|..+.
T Consensus 146 ----~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~----a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 213 (273)
T 1ouv_A 146 ----GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK----DSP----GCFNAGNMYHHGEGATKNFKEALARYSKAC 213 (273)
T ss_dssp ----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHH----HHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHH----HHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 1334445667777 899999999999886542 222 22334777777 899999999999887
Q ss_pred Hh
Q 014143 250 KN 251 (430)
Q Consensus 250 ~~ 251 (430)
+.
T Consensus 214 ~~ 215 (273)
T 1ouv_A 214 EL 215 (273)
T ss_dssp HT
T ss_pred hC
Confidence 63
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.77 E-value=0.0048 Score=55.14 Aligned_cols=188 Identities=10% Similarity=-0.051 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhh
Q 014143 52 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 131 (430)
Q Consensus 52 ~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ 131 (430)
|...++.+.+..+.+.|+|+++++.+..++... +. + .......-.+...+-...+ .+.....++..++ ..++
T Consensus 2 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-p~-~-~~~~~a~~~lg~~~~~~~~--~~~A~~~~~~~l~---~~P~ 73 (225)
T 2yhc_A 2 NPPNEIYATAQQKLQDGNWRQAITQLEALDNRY-PF-G-PYSQQVQLDLIYAYYKNAD--LPLAQAAIDRFIR---LNPT 73 (225)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT-S-TTHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHH---HCTT
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC-C-hHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHH---HCcC
Confidence 456778889999999999999999999999865 42 1 1122222223332222122 3333333333332 1111
Q ss_pred hhhHHHHhHHHH------------------HHHHHhccHHHHHHHHHHHHhhccCCCCCcchhh-----cchHHHHHHHH
Q 014143 132 ERLWFKTNLKLC------------------KIWFDMGEYGRMSKILKELHKSCQREDGTDDQKK-----GSQLLEVYAIE 188 (430)
Q Consensus 132 ~kl~~r~~~~La------------------~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~-----~~~~~e~~l~~ 188 (430)
....-.....+| ..+.+.|++++|...++++....++.+...+... ...+.+.....
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~ 153 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSV 153 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111001122333 4444578999999999999887543321101000 00001222445
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
+.++...|++..|...++++.+.. ++...........|..+...|++.+|...|-.+..
T Consensus 154 a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 154 AEYYTERGAWVAVVNRVEGMLRDY---PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHC---cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 677888999999999888876542 22222233445568888888888888877766544
No 91
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.77 E-value=0.0032 Score=56.09 Aligned_cols=165 Identities=13% Similarity=0.157 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 014143 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (430)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~k 133 (430)
..++..++.++.+.|+++++...|...+..- |.... ....+...+....+ .+.....++.+++. .++
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~-----a~~~lg~~~~~~g~--~~~A~~~~~~al~~---~P~-- 71 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPE-----ALYWLARTQLKLGL--VNPALENGKTLVAR---TPR-- 71 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHH-----HHHHHHHHHHHTTC--HHHHHHHHHHHHHH---CTT--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH-----HHHHHHHHHHHcCC--HHHHHHHHHHHHHh---CCC--
Confidence 4567889999999999999999999988764 43221 12222222221111 33334444444331 111
Q ss_pred hHHHHhHHHHHHHHHh-----------ccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHH
Q 014143 134 LWFKTNLKLCKIWFDM-----------GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLK 202 (430)
Q Consensus 134 l~~r~~~~La~~~~~~-----------g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~ 202 (430)
.......+|.++... |++++|...+.+....-+ ...+.+.....++...|++.+|.
T Consensus 72 -~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P------------~~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 72 -YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP------------RYAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp -CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc------------ccHHHHHHHHHHHHHcCChHHHH
Confidence 123345889999999 999999999999888732 12356667788999999999999
Q ss_pred HHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 203 QLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 203 ~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
..++++..+. .+|. .+...|.++...|+|.+|...|-.+.+.
T Consensus 139 ~~~~~al~~~---~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 139 ASLKQALALE---DTPE----IRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp HHHHHHHHHC---CCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc---cchH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999998765 3333 3345588888999999999999998764
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.76 E-value=0.00012 Score=61.59 Aligned_cols=119 Identities=11% Similarity=0.014 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCC
Q 014143 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (430)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (430)
+++++|++.|++.+..+++. ..+.-.++.+|++.|+++++.+++.+.++.. |+
T Consensus 11 ~~~e~ai~~~~~a~~~~p~~----~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-----------------------p~ 63 (150)
T 4ga2_A 11 ADVERYIASVQGSTPSPRQK----SIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-----------------------ER 63 (150)
T ss_dssp HHHHHHHHHHHHHSCSHHHH----HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT
T ss_pred ChHHHHHHHHHHhcccCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------CC
Confidence 46899999999998766532 3345679999999999999999999887753 33
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHH
Q 014143 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (430)
Q Consensus 110 ~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~ 189 (430)
+. .....+|.+|...|++++|...++.....-+ ...+.+...+
T Consensus 64 -~~------------------------~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p------------~~~~~~~~la 106 (150)
T 4ga2_A 64 -DP------------------------KAHRFLGLLYELEENTDKAVECYRRSVELNP------------TQKDLVLKIA 106 (150)
T ss_dssp -CH------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------TCHHHHHHHH
T ss_pred -CH------------------------HHHHHHHHHHHHcCchHHHHHHHHHHHHhCC------------CCHHHHHHHH
Confidence 00 1134789999999999999999999887732 1246677778
Q ss_pred HHHHhhcCHHH-HHHHHHHHHhhh
Q 014143 190 QMYTETKNNKK-LKQLYQKALAIK 212 (430)
Q Consensus 190 ~l~~~~~d~~k-a~~~l~~a~~~~ 212 (430)
.++...|++.+ ++.++++|.++.
T Consensus 107 ~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 107 ELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp HHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred HHHHHcCChHHHHHHHHHHHHHhC
Confidence 88999999875 555678887654
No 93
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.75 E-value=0.003 Score=57.85 Aligned_cols=178 Identities=15% Similarity=0.084 Sum_probs=123.7
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYR----LGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~----~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~ 104 (430)
.+++++|++.|++.++.. ...++..++.+|.. .|++++++++|++....- .......+...+
T Consensus 55 ~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~ 120 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--------YAEGCASLGGIY 120 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--------CccHHHHHHHHH
Confidence 568999999999998764 25788899999999 999999999999887641 122333333333
Q ss_pred cCCC--CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHH----hccHHHHHHHHHHHHhhccCCCCCcchhhc
Q 014143 105 SGSA--SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (430)
Q Consensus 105 ~~~~--~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~----~g~~~~A~~~l~el~~~~~~~~~~~d~~~~ 178 (430)
.... ..+.+.....++.+.+. . .......+|.+|.. .+++++|.+.++.....- +
T Consensus 121 ~~~~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~---- 181 (273)
T 1ouv_A 121 HDGKVVTRDFKKAVEYFTKACDL----N----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-------D---- 181 (273)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------C----
T ss_pred HcCCCcccCHHHHHHHHHHHHhc----C----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------C----
Confidence 3200 11244445555554431 1 12345689999998 899999999999876551 1
Q ss_pred chHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhh----hhcHHHHHHHHHHHHH
Q 014143 179 SQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA----ERQWADAATDFFEAFK 250 (430)
Q Consensus 179 ~~~~e~~l~~~~l~~~----~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~y~~A~~~f~ea~~ 250 (430)
...+.....++.. .+|+.+|..+++++.... ++ ......|.++.. .+++.+|..+|..+.+
T Consensus 182 ---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~----~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 182 ---SPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----NG----GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp ---HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----CH----HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC----CH----HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence 2344556678888 999999999999886542 22 122334677777 8999999999999865
No 94
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.75 E-value=0.00049 Score=68.44 Aligned_cols=207 Identities=11% Similarity=0.051 Sum_probs=110.8
Q ss_pred CCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhH--HHHHHHHHHHhcCC
Q 014143 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYS--EKCINNIMDFVSGS 107 (430)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~--~k~v~~il~~~~~~ 107 (430)
+++++|++.|++.+..+++. ..++..++.+|...|+++++++.+.+.++.. |....... +.+.+.........
T Consensus 227 ~~~~~a~~~~~~al~~~~~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~ 301 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKAPGV----TDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNL 301 (472)
T ss_dssp ---CHHHHHHHHHHHHCSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhCccH----HHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhH
Confidence 35678888888887776543 4567789999999999999999999998875 54222111 11111111111110
Q ss_pred C---CCChhHHHHHHHHHHHHHHHhhhh-hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHH
Q 014143 108 A---SQNFSLLREFYQTTLKALEEAKNE-RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (430)
Q Consensus 108 ~---~~~~~~~~~~~~~~~e~l~~~~~~-kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e 183 (430)
. ..........++.+.+.++.+... .........+|.++...|++++|.+.+++....-.. + ...-.
T Consensus 302 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~-----~----~~~~~ 372 (472)
T 4g1t_A 302 RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT-----P----VAKQL 372 (472)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC-----H----HHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC-----C----hHHHH
Confidence 0 001122233344444443332111 111233458999999999999999999988765321 1 11222
Q ss_pred HHHHHHHH-HHhhcCHHHHHHHHHHHHhhhccCC-------------------CchhHHHHHHhhhHhhhhhhcHHHHHH
Q 014143 184 VYAIEIQM-YTETKNNKKLKQLYQKALAIKSAIP-------------------HPRIMGIIRECGGKMHMAERQWADAAT 243 (430)
Q Consensus 184 ~~l~~~~l-~~~~~d~~ka~~~l~~a~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~y~~A~~ 243 (430)
++.....+ ....|++.+|...|.++.++..... +|.. +..+...|.++...|+|.+|..
T Consensus 373 ~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~-~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 373 LHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGAD-SEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-C-TTHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHH
Confidence 33333333 3467899999999999876543221 1111 1223445778888888888888
Q ss_pred HHHHHHHh
Q 014143 244 DFFEAFKN 251 (430)
Q Consensus 244 ~f~ea~~~ 251 (430)
+|-.+.+.
T Consensus 452 ~y~kALe~ 459 (472)
T 4g1t_A 452 DSERGLES 459 (472)
T ss_dssp --------
T ss_pred HHHHHHhc
Confidence 88888763
No 95
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.67 E-value=0.021 Score=53.44 Aligned_cols=186 Identities=11% Similarity=0.106 Sum_probs=119.2
Q ss_pred cCCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC
Q 014143 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (430)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (430)
+..+++++|++.++++...+|+. ...+..-+++.|...|+++.++..++.. . ......+..+...+..
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~---~~e~~~~l~r~yi~~g~~~~al~~~~~~--------~-~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPER---DVERDVFLYRAYLAQRKYGVVLDEIKPS--------S-APELQAVRMFAEYLAS 77 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHH---HHHHHHHHHHHHHHTTCHHHHHHHSCTT--------S-CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcccCCchh---hHHHHHHHHHHHHHCCCHHHHHHHhccc--------C-ChhHHHHHHHHHHHcC
Confidence 34568999999999886655432 2345566789999999999999766431 1 1234566666666665
Q ss_pred CCCCChhHHHHHHHHHHHHHHHh-hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHH
Q 014143 107 SASQNFSLLREFYQTTLKALEEA-KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVY 185 (430)
Q Consensus 107 ~~~~~~~~~~~~~~~~~e~l~~~-~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~ 185 (430)
..+ .+ +-++...+.+... ..+.. .....+|.++...|++++|.+.+.. + + ..+.+
T Consensus 78 ~~~--~~---~A~~~l~~ll~~~~~P~~~--~~~~~la~~~~~~g~~~~Al~~l~~-------~---~-------~~~~~ 133 (291)
T 3mkr_A 78 HSR--RD---AIVAELDREMSRSVDVTNT--TFLLMAASIYFYDQNPDAALRTLHQ-------G---D-------SLECM 133 (291)
T ss_dssp STT--HH---HHHHHHHHHHHSCCCCSCH--HHHHHHHHHHHHTTCHHHHHHHHTT-------C---C-------SHHHH
T ss_pred CCc--HH---HHHHHHHHHHhcccCCCCH--HHHHHHHHHHHHCCCHHHHHHHHhC-------C---C-------CHHHH
Confidence 222 22 2222222222210 01111 2345899999999999999998887 1 1 13567
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 186 AIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 186 l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
...++++...|++.+|...++++.... ++. ....+-..-..+....++|.+|...|-++.+.+
T Consensus 134 ~~l~~~~~~~g~~~~A~~~l~~~~~~~---p~~-~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~ 196 (291)
T 3mkr_A 134 AMTVQILLKLDRLDLARKELKKMQDQD---EDA-TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC 196 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC---cCc-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC
Confidence 777889999999999999999987663 221 111111111122335689999999999998753
No 96
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.65 E-value=0.00054 Score=65.90 Aligned_cols=149 Identities=10% Similarity=0.122 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 132 (430)
...++..++.+|++.|+++++++.|...+... +.... ...+.... ..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~-------------------~~~~~~~~-------------~~ 192 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESS-------------------FSNEEAQK-------------AQ 192 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCC-------------------CCSHHHHH-------------HH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hcccc-------------------CChHHHHH-------------HH
Confidence 46788999999999999999999999998875 43210 00100000 11
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
.....+...+|.++...|+|++|...+.+...... .....+...+.++..+|++.+|...++++..+.
T Consensus 193 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 193 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS------------NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 12234566999999999999999999999988732 124566777889999999999999999998763
Q ss_pred ccCCCchhHHHHHHhhhHhhhhhhcHHHHHH-HHHHHHHhh
Q 014143 213 SAIPHPRIMGIIRECGGKMHMAERQWADAAT-DFFEAFKNY 252 (430)
Q Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~-~f~ea~~~~ 252 (430)
.. . ...+...|.++...+++.+|.+ .|...|..+
T Consensus 261 P~-----~-~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 261 PN-----N-KAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp SS-----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 1 1233445777778888888854 444445444
No 97
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.63 E-value=0.0036 Score=61.44 Aligned_cols=181 Identities=9% Similarity=0.010 Sum_probs=104.0
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
...+|.++...|++++|...+.+....-. .....+.....++..+|++.+|..+++++.....
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP------------~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P----- 231 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDA------------KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV----- 231 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCc------------cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-----
Confidence 34778888888999999999999888722 1245566667788889999999999999876532
Q ss_pred hhHHHHHHhhhHhhhh-hhcHHHH-----HHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCCCCCCcc--ccccCC
Q 014143 219 RIMGIIRECGGKMHMA-ERQWADA-----ATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQ--EAKPYK 290 (430)
Q Consensus 219 ~~~~~~~~~~g~~~~~-~~~y~~A-----~~~f~ea~~~~~~~~~~~~~~~lky~~l~~lL~~~~~~~~~~~--~~~~~~ 290 (430)
.. ...+..-|.++.. .+.+.+| ..+|..+...- |....+ +.-+..++.......+..- ......
T Consensus 232 ~~-~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-----P~~~~a--~~~l~~ll~~~g~~~~~~a~~~~~~~~ 303 (382)
T 2h6f_A 232 RN-NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-----PHNESA--WNYLKGILQDRGLSKYPNLLNQLLDLQ 303 (382)
T ss_dssp TC-HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-----TTCHHH--HHHHHHHHTTTCGGGCHHHHHHHHHHT
T ss_pred CC-HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-----CCCHHH--HHHHHHHHHccCccchHHHHHHHHHhc
Confidence 21 2233444556655 4443666 35666665421 222222 2223333332211001000 000012
Q ss_pred CCcchH-HHHHHHHHHhhC------CHHH-HHHHHHHhHHh-hcCChhHHHHHHHHHHHHHHH
Q 014143 291 NDPEIL-AMTNLIAAYQRN------EIIE-FEKILKSNRKT-IMDDPFIRNYIEDLLKNVRTQ 344 (430)
Q Consensus 291 ~~~~~~-~l~~L~~af~~~------dl~~-f~~~l~~~~~~-l~~D~~l~~~~~~L~~~i~~~ 344 (430)
.+|... .+..|..++... +... +.+.+.-+... ...||.-...|..+...+..+
T Consensus 304 ~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 304 PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 234433 455666666542 2232 46677777666 688999888888877666543
No 98
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.61 E-value=0.0014 Score=70.00 Aligned_cols=132 Identities=15% Similarity=0.185 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 132 (430)
...++.++|.+|.++|++++++++|++.++.. |+. .
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-----------------------P~~-~-------------------- 43 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-----------------------PEF-A-------------------- 43 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------SCC-H--------------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------CCC-H--------------------
Confidence 36889999999999999999999998887753 430 0
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
....+||.+|.+.|++++|...+++....-. ...+.+...+.++..+|++.+|...|++|..+.
T Consensus 44 ----~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P------------~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~ 107 (723)
T 4gyw_A 44 ----AAHSNLASVLQQQGKLQEALMHYKEAIRISP------------TFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 107 (723)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 1134889999999999999999999887721 135677788899999999999999999998764
Q ss_pred ccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
. . .+..+...|.++...|+|.+|..+|.++.+
T Consensus 108 P-----~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 108 P-----A-FADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp T-----T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-----C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 2 123344558889999999999999999975
No 99
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.59 E-value=0.0016 Score=59.14 Aligned_cols=190 Identities=11% Similarity=0.036 Sum_probs=115.6
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|.+.++.++++ ..++..++.+|...|+++++.+++...+... +... .....+...+....
T Consensus 56 ~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~-----~~~~~la~~~~~~g 125 (275)
T 1xnf_A 56 LGLRALARNDFSQALAIRPDM----PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYN-----YAHLNRGIALYYGG 125 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCT-----HHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-cccc-----HHHHHHHHHHHHhc
Confidence 467999999999999987754 4677889999999999999999999999875 4322 22223333332212
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
+ .+.....++.+++. .++.. ... ....+....|++++|...+.+....... + ... ...
T Consensus 126 ~--~~~A~~~~~~a~~~---~~~~~-~~~---~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~----~~~----~~~ 183 (275)
T 1xnf_A 126 R--DKLAQDDLLAFYQD---DPNDP-FRS---LWLYLAEQKLDEKQAKEVLKQHFEKSDK-----E----QWG----WNI 183 (275)
T ss_dssp C--HHHHHHHHHHHHHH---CTTCH-HHH---HHHHHHHHHHCHHHHHHHHHHHHHHSCC-----C----STH----HHH
T ss_pred c--HHHHHHHHHHHHHh---CCCCh-HHH---HHHHHHHHhcCHHHHHHHHHHHHhcCCc-----c----hHH----HHH
Confidence 2 33444555555442 11111 111 1223345668899999888777666431 1 111 123
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
+.++...++..+|...+.++....... .|. ....+...|.++...|+|.+|..+|-.+....
T Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 184 VEFYLGNISEQTLMERLKADATDNTSL-AEH-LSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHTTSSCHHHHHHHHHHHCCSHHHH-HHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHhcccccc-ccc-ccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 455666777777777777764333221 111 12344455777777788888888888876543
No 100
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.59 E-value=0.0025 Score=51.67 Aligned_cols=115 Identities=10% Similarity=0.136 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 132 (430)
...+.+++|..++++|+|++++++|++.+... |+ +.
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-----------------------p~-~~-------------------- 42 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-----------------------PS-NI-------------------- 42 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH--------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------CC-CH--------------------
Confidence 46778899999999999999999998887642 33 10
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
.....+|.+|...|+|++|.+.+.+.......... + .......+.....++..+|++.+|..+++++....
T Consensus 43 ----~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~--~---~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 43 ----TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA--D---YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ----HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch--h---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 11347899999999999999999888776432211 1 13345677788889999999999999999987542
Q ss_pred ccCCCchhHHH
Q 014143 213 SAIPHPRIMGI 223 (430)
Q Consensus 213 ~~~~~~~~~~~ 223 (430)
++|.+...
T Consensus 114 ---~~~~~~~~ 121 (127)
T 4gcn_A 114 ---RDPELVKK 121 (127)
T ss_dssp ---CCHHHHHH
T ss_pred ---cCHHHHHH
Confidence 35654433
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.56 E-value=0.0014 Score=69.40 Aligned_cols=153 Identities=12% Similarity=0.062 Sum_probs=111.7
Q ss_pred cCCCCHHHHHHHHHHhh--------cCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 014143 27 LVETDPEGALAGFAEVV--------AMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (430)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii--------~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~ 98 (430)
+..+++++|++.|.+.+ +.++++ ..++..++.++.+.|+++++++.++..+...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------------- 463 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSES----VELPLMEVRALLDLGDVAKATRKLDDLAERV-------------- 463 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTC----SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccc----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--------------
Confidence 67788999999999998 554433 5678889999999999999999998887753
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhc
Q 014143 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (430)
Q Consensus 99 ~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~ 178 (430)
|+ +. .....+|.++...|++++|.+.+++....-.+
T Consensus 464 ---------p~-~~------------------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---------- 499 (681)
T 2pzi_A 464 ---------GW-RW------------------------RLVWYRAVAELLTGDYDSATKHFTEVLDTFPG---------- 499 (681)
T ss_dssp ---------CC-CH------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT----------
T ss_pred ---------cc-hH------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------
Confidence 33 00 11347788888889999999888888777321
Q ss_pred chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 179 ~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
..+.+...+.++...|++.+ ...|+++.... |.. ...+...|.++...|+|.+|...|-.+.+
T Consensus 500 --~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-----P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 500 --ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-----DGV-ISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp --CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-----TTC-HHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred --ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-----Cch-HHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 13455566777888888888 88888886553 221 12344457888888889888888877643
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.55 E-value=0.0035 Score=49.44 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=28.6
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014143 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (430)
Q Consensus 141 ~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~ 209 (430)
.+|.++...|++++|.+.+.+....... ....+...+.++...|++.+|...+..+.
T Consensus 74 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 74 NLGNAYYKQGDYDEAIEYYQKALELDPR------------SAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC------------ChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4455555556666666655555544210 11233334455555566666555555543
No 103
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.51 E-value=0.0043 Score=52.14 Aligned_cols=121 Identities=12% Similarity=0.093 Sum_probs=94.0
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|.+.++..++. ..++..++.++...|+++++.+++...+... |
T Consensus 55 ~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------------------~ 107 (186)
T 3as5_A 55 TGAVDRGTELLERSLADAPDN----VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-----------------------P 107 (186)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------T
T ss_pred cCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----------------------c
Confidence 567999999999998876643 4667889999999999999999988776642 2
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
+ +. .....+|.++...|++++|.+.+.+....... ....+...
T Consensus 108 ~-~~------------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l 150 (186)
T 3as5_A 108 I-NF------------------------NVRFRLGVALDNLGRFDEAIDSFKIALGLRPN------------EGKVHRAI 150 (186)
T ss_dssp T-CH------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHH
T ss_pred H-hH------------------------HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc------------chHHHHHH
Confidence 2 00 11247788899999999999999998877321 13566677
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhc
Q 014143 189 IQMYTETKNNKKLKQLYQKALAIKS 213 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~~~~ 213 (430)
+.++...|++.+|..+++++....+
T Consensus 151 a~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 151 AFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 7889999999999999998876543
No 104
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.49 E-value=0.01 Score=46.63 Aligned_cols=130 Identities=17% Similarity=0.250 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhh
Q 014143 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (430)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl 134 (430)
.++..++.++...|+++++.+.+...+... |+ +.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------------------~~-~~---------------------- 35 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-----------------------PR-SA---------------------- 35 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------TT-CH----------------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-----------------------Cc-ch----------------------
Confidence 356778999999999999998887775531 22 00
Q ss_pred HHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014143 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (430)
Q Consensus 135 ~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~ 214 (430)
.....+|.++...|++++|.+.+.+....... ....+...+.++...|++.+|...++.+......
T Consensus 36 --~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 101 (136)
T 2fo7_A 36 --EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101 (136)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred --hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 01236788888999999999999998776321 1245556678899999999999999988654221
Q ss_pred CCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 215 ~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
+ ...+...|.++...|++.+|...|.++..
T Consensus 102 --~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 102 --S----AEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp --C----HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred --C----hHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 1 12334457788889999999999988765
No 105
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.48 E-value=0.011 Score=48.94 Aligned_cols=134 Identities=10% Similarity=0.066 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 132 (430)
....+..++..+...|+++++.+.+...+... |+ +.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----------------------~~-~~-------------------- 47 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELN-----------------------PS-NA-------------------- 47 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------------------TT-CH--------------------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------------------CC-Ch--------------------
Confidence 46788899999999999999999998887642 22 00
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
.+...+|.++...|++++|.+.+.+....... ....+...+.++...|++.+|..++.++....
T Consensus 48 ----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 48 ----IYYGNRSLAYLRTECYGYALGDATRAIELDKK------------YIKGYYRRAASNMALGKFRAALRDYETVVKVK 111 (166)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 12347888999999999999999998877321 23566677788999999999999999987653
Q ss_pred ccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
.. ++.. ......+..+...++|.+|...+-.+-.
T Consensus 112 p~--~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 112 PH--DKDA--KMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TT--CHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC--CHHH--HHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 21 2221 1222234445567888888777665533
No 106
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.47 E-value=0.0025 Score=54.25 Aligned_cols=121 Identities=13% Similarity=0.228 Sum_probs=85.1
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCC
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (430)
..+++++|++.|.+.++.++++ ..++..++.+|...|+++++.++|...+...
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----------------------- 74 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQN----SEQWALLGEYYLWQNDYSNSLLAYRQALQLR----------------------- 74 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------------
T ss_pred hccCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------------
Confidence 3557999999999999887754 4678889999999999999999998887753
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHH-HHHhccH--HHHHHHHHHHHhhccCCCCCcchhhcchHHHH
Q 014143 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKI-WFDMGEY--GRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (430)
Q Consensus 108 ~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~-~~~~g~~--~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~ 184 (430)
|+ +. .....+|.+ +...|++ ++|...+.+....... ....
T Consensus 75 p~-~~------------------------~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~ 117 (177)
T 2e2e_A 75 GE-NA------------------------ELYAALATVLYYQASQHMTAQTRAMIDKALALDSN------------EITA 117 (177)
T ss_dssp CS-CH------------------------HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT------------CHHH
T ss_pred CC-CH------------------------HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC------------cHHH
Confidence 22 00 012356666 6677887 8888888877766321 1245
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 185 YAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 185 ~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
+...+.++...|++.+|...+.++....
T Consensus 118 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 118 LMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 5566677888888888888888776553
No 107
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.46 E-value=0.0032 Score=62.40 Aligned_cols=203 Identities=9% Similarity=0.009 Sum_probs=111.6
Q ss_pred CCCHHHHHHHHHHhhcCCc----c-chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHH
Q 014143 29 ETDPEGALAGFAEVVAMEP----E-KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR---NYSEKCINNI 100 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~----~-~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k---~~~~k~v~~i 100 (430)
.+++++|++.|++.++..+ + .......++.+++.+|...|+++++.+++.+.+... +.... .....+....
T Consensus 64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~-~~~~~~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 64 KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC-EKFSSPYRIESPELDCEE 142 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSCCSSCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-HhcccccchhhHHHHHHH
Confidence 5789999999999887532 1 122346678899999999999999999999998875 32211 1112222221
Q ss_pred HHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHH---HhccHHHHHHHHHHHHhhccCCCCCcchhh
Q 014143 101 MDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWF---DMGEYGRMSKILKELHKSCQREDGTDDQKK 177 (430)
Q Consensus 101 l~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~---~~g~~~~A~~~l~el~~~~~~~~~~~d~~~ 177 (430)
...+......+.+.....++.+++. .++. . .....++.++. ..|++++|.+.+++....-+. +
T Consensus 143 g~~~~~~~~~~y~~A~~~~~kal~~---~p~~-~--~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-----~--- 208 (472)
T 4g1t_A 143 GWTRLKCGGNQNERAKVCFEKALEK---KPKN-P--EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-----N--- 208 (472)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHH---STTC-H--HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-----C---
T ss_pred HHHHHHHccccHHHHHHHHHHHHHh---CCCC-H--HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-----c---
Confidence 1111000001122333334433331 1111 1 11223444433 346667788877776665321 1
Q ss_pred cchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 178 GSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 178 ~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
......+......++...+++.+|..+++++..... .. ...+...|.++...++|.+|...|..+.+..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-----~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 277 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-----GV-TDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-----SC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-----cH-HHHHHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence 112222222333445566788899999988865432 11 1233445888889999999999999987643
No 108
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.46 E-value=0.0043 Score=51.50 Aligned_cols=125 Identities=10% Similarity=0.080 Sum_probs=93.4
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCC
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (430)
..+++++|++.|.+.++..+++ ..++..++.++...|+++++.+.+...+...
T Consensus 25 ~~~~~~~A~~~~~~al~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----------------------- 77 (166)
T 1a17_A 25 KAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELD----------------------- 77 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------
Confidence 3568999999999999887654 5678899999999999999999998877642
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHH
Q 014143 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (430)
Q Consensus 108 ~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~ 187 (430)
|+ +. .....+|.++...|++++|...+.+....... + ......+.
T Consensus 78 ~~-~~------------------------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-----~-----~~~~~~~~ 122 (166)
T 1a17_A 78 KK-YI------------------------KGYYRRAASNMALGKFRAALRDYETVVKVKPH-----D-----KDAKMKYQ 122 (166)
T ss_dssp TT-CH------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----C-----HHHHHHHH
T ss_pred cc-cH------------------------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----C-----HHHHHHHH
Confidence 22 00 11347889999999999999999998877431 1 12233345
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014143 188 EIQMYTETKNNKKLKQLYQKALAIKSA 214 (430)
Q Consensus 188 ~~~l~~~~~d~~ka~~~l~~a~~~~~~ 214 (430)
.+..+...|++.+|...+..+..+...
T Consensus 123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 123 ECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 555677889999999998887655433
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.46 E-value=0.0019 Score=52.49 Aligned_cols=95 Identities=14% Similarity=0.144 Sum_probs=76.4
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
...+|..++..|+|++|.+.+++.....+ .....+...+.++..+|++.+|...++++..+..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p----- 78 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDP------------ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS----- 78 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-----
Confidence 44789999999999999999999887732 1246777788899999999999999999976532
Q ss_pred hhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 219 ~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
.. ...+...|.++...|+|.+|...|..+.+.
T Consensus 79 ~~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 79 KF-IKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp TC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hh-hHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 21 234455688999999999999999999763
No 110
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.37 E-value=0.0059 Score=48.12 Aligned_cols=102 Identities=13% Similarity=0.128 Sum_probs=80.0
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC-C
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP-H 217 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~-~ 217 (430)
...+|..+...|++++|...+.+....... ....+...+.++...|++.+|..+++++........ +
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 74 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT------------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED 74 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh
Confidence 458899999999999999999998877321 235666778889999999999999999977654332 2
Q ss_pred chhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 218 ~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
+......+...|.++...++|.+|..+|..+.+..
T Consensus 75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 33335566667899999999999999999987743
No 111
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.37 E-value=0.0089 Score=47.49 Aligned_cols=101 Identities=10% Similarity=0.014 Sum_probs=77.7
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCch
Q 014143 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (430)
Q Consensus 140 ~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~ 219 (430)
..+|..+...|+|++|.+.+..+.....+ + ....+.+...+.++...|++.+|...++++....+ +..
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-----~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p---~~~ 73 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-----G----VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP---THD 73 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-----S----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TST
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-----C----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC---CCc
Confidence 57899999999999999999998887432 1 22346667778899999999999999998865432 211
Q ss_pred hHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 220 IMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 220 ~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
.........|.++...|+|.+|...|-.+...+
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 123344556888999999999999999998765
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.36 E-value=0.0011 Score=56.84 Aligned_cols=154 Identities=9% Similarity=0.045 Sum_probs=96.9
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCC
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (430)
..+++++|+..|.+.++.+|++ ..++..++.++...|+++++.+.+...+... + .. ..... ...+......
T Consensus 18 ~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p--~~-~~~~~-~~~~~~~~~~ 88 (176)
T 2r5s_A 18 QQGEHAQALNVIQTLSDELQSR----GDVKLAKADCLLETKQFELAQELLATIPLEY-Q--DN-SYKSL-IAKLELHQQA 88 (176)
T ss_dssp HTTCHHHHHHHHHTSCHHHHTS----HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C--CH-HHHHH-HHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C--Ch-HHHHH-HHHHHHHhhc
Confidence 3567999999999998877654 5778899999999999999999998876643 2 11 11111 1111111110
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHH
Q 014143 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (430)
Q Consensus 108 ~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~ 187 (430)
.. . .....++.+++ ..++ .......+|.++...|++++|...+.++...-... .+ ...+..
T Consensus 89 ~~--~-~a~~~~~~al~---~~P~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~-------~~a~~~ 149 (176)
T 2r5s_A 89 AE--S-PELKRLEQELA---ANPD---NFELACELAVQYNQVGRDEEALELLWNILKVNLGA---QD-------GEVKKT 149 (176)
T ss_dssp TS--C-HHHHHHHHHHH---HSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT---TT-------THHHHH
T ss_pred cc--c-hHHHHHHHHHH---hCCC---CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc---Ch-------HHHHHH
Confidence 01 0 01222222222 1111 12345588999999999999999999887763211 01 123444
Q ss_pred HHHHHHhhcCHHHHHHHHHHHH
Q 014143 188 EIQMYTETKNNKKLKQLYQKAL 209 (430)
Q Consensus 188 ~~~l~~~~~d~~ka~~~l~~a~ 209 (430)
...++...|+..+|...|+++.
T Consensus 150 l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 150 FMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHH
Confidence 5577888899998888888764
No 113
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.32 E-value=0.0063 Score=61.76 Aligned_cols=145 Identities=13% Similarity=0.078 Sum_probs=100.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhH
Q 014143 61 VKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNL 140 (430)
Q Consensus 61 ~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~ 140 (430)
+.-+..+|+|+++.+++.+.+...+...+ |+ .. -.+++..
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg------------------~~-Hp---------------------~~a~~~~ 355 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFA------------------DT-NL---------------------YVLRLLS 355 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBC------------------TT-SH---------------------HHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcC------------------CC-CH---------------------HHHHHHH
Confidence 34466788888888888877776522211 21 01 1123455
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC---C
Q 014143 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP---H 217 (430)
Q Consensus 141 ~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~---~ 217 (430)
.||.+|...|+|++|..++++.........|.+. ......+...+.+|..+|++.+|..+|.+|..+...+. |
T Consensus 356 nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H----p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 356 IASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN----AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 8999999999999999988887665433334332 34566677788899999999999999999987776543 4
Q ss_pred chhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 218 ~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
|.+.. +....+..+...+.|+.|-..|+.+-+
T Consensus 432 p~~~~-~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 432 PITKD-LEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65543 445556677788888888888877643
No 114
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.32 E-value=0.0057 Score=49.54 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 132 (430)
...+.+..|..|++.|+|+++++.|++.++.- |+ +.
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-----------------------p~-~~-------------------- 47 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-----------------------PE-NA-------------------- 47 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH--------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------CC-CH--------------------
Confidence 36778899999999999999999998887653 32 00
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
.....+|..+...|++++|...+......-. ...+.+...+.++..+|++.+|...++++.++.
T Consensus 48 ----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 48 ----ILYSNRAACLTKLMEFQRALDDCDTCIRLDS------------KFIKGYIRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHhhHHHhhccHHHHHHHHHHHHHhhh------------hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 1134788999999999999999998887721 134667778889999999999999999997763
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.29 E-value=0.01 Score=51.69 Aligned_cols=136 Identities=17% Similarity=0.056 Sum_probs=96.6
Q ss_pred HHhhccc-CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 014143 21 SILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINN 99 (430)
Q Consensus 21 ~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~ 99 (430)
|..|... ..+++++|++.|.++++. ...++..++.+|...|+++++.+.+...+...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------- 67 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDP-------HSRICFNIGCMYTILKNMTEAEKAFTRSINRD--------------- 67 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------
Confidence 3344433 346799999999998622 24688999999999999999999988776642
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcch----
Q 014143 100 IMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQ---- 175 (430)
Q Consensus 100 il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~---- 175 (430)
|+ .. .....+|.++...|++++|.+.+++............-.
T Consensus 68 --------~~-~~------------------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 114 (213)
T 1hh8_A 68 --------KH-LA------------------------VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114 (213)
T ss_dssp --------TT-CH------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred --------cc-ch------------------------HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcc
Confidence 22 00 113488999999999999999999998875432100000
Q ss_pred hhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 176 KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 176 ~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
.......+.+...+.++...|++.+|...++++...
T Consensus 115 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 001234577778888899999999999999888754
No 116
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.23 E-value=0.0031 Score=52.74 Aligned_cols=94 Identities=13% Similarity=0.145 Sum_probs=72.8
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
.+.||.+|.+.|+|++|.+.+.+....-+ ...+.+...+.++...|++.+|...++++..+.+. ++
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~~p------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~ 99 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINVQE------------RDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT--QK 99 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC--CH
Confidence 35899999999999999999999988732 12467777888999999999999999999766422 12
Q ss_pred hhHHHHHHhhhHhhhhhhcHHHHHHHHHH-HHH
Q 014143 219 RIMGIIRECGGKMHMAERQWADAATDFFE-AFK 250 (430)
Q Consensus 219 ~~~~~~~~~~g~~~~~~~~y~~A~~~f~e-a~~ 250 (430)
..+...|.++...+++.+|...|++ +.+
T Consensus 100 ----~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 100 ----DLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp ----HHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 2334457888889999998888764 443
No 117
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.19 E-value=0.0045 Score=57.86 Aligned_cols=154 Identities=8% Similarity=0.006 Sum_probs=99.3
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCC
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (430)
..+++++|++.|++.++.+|++ ..++..++.++...|+++++.+.+...+... + ..........+......
T Consensus 129 ~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-p----~~~~~~~~~~~~l~~~~ 199 (287)
T 3qou_A 129 QESNYTDALPLLXDAWQLSNQN----GEIGLLLAETLIALNRSEDAEAVLXTIPLQD-Q----DTRYQGLVAQIELLXQA 199 (287)
T ss_dssp HTTCHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-C----SHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCcc----hhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-c----chHHHHHHHHHHHHhhc
Confidence 4568999999999999988865 5678899999999999999999998886643 2 11122222222222211
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHH
Q 014143 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (430)
Q Consensus 108 ~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~ 187 (430)
.. . .....++..++ ...+ .......||.++...|++++|...+.++...-.+ ..-.+.+..
T Consensus 200 ~~--~-~a~~~l~~al~---~~P~---~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~----------~~~~~a~~~ 260 (287)
T 3qou_A 200 AD--T-PEIQQLQQQVA---ENPE---DAALATQLALQLHQVGRNEEALELLFGHLRXDLT----------AADGQTRXT 260 (287)
T ss_dssp TS--C-HHHHHHHHHHH---HCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------GGGGHHHHH
T ss_pred cc--C-ccHHHHHHHHh---cCCc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc----------cccchHHHH
Confidence 11 0 11222222222 1111 1134558999999999999999999998887321 111244455
Q ss_pred HHHHHHhhcCHHHHHHHHHHHH
Q 014143 188 EIQMYTETKNNKKLKQLYQKAL 209 (430)
Q Consensus 188 ~~~l~~~~~d~~ka~~~l~~a~ 209 (430)
...++...|+...|...|+++.
T Consensus 261 l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 261 FQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHH
Confidence 5677888898888888887764
No 118
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.18 E-value=0.034 Score=52.09 Aligned_cols=191 Identities=10% Similarity=0.080 Sum_probs=119.5
Q ss_pred HHHHHHHHHHhhc-CCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCC
Q 014143 32 PEGALAGFAEVVA-MEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ 110 (430)
Q Consensus 32 ~~~Ai~~~~~ii~-~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~ 110 (430)
+++|++.|++.++ ..|+. ..+....+.++...|+++++.+.|...+... +.... .+............+
T Consensus 80 ~~~A~~~~~rAl~~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~----~~~~~~~~~~~~~~~- 149 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKN----MLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPT----LVYIQYMKFARRAEG- 149 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTH----HHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCcc----HHHHHHHHHHHHhcC-
Confidence 3899999999998 56643 3466788999999999999999999998753 32111 122222222211011
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHH-hccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHH
Q 014143 111 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD-MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (430)
Q Consensus 111 ~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~-~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~ 189 (430)
.+.....++.+++. .. ..-.+| +..+.+... .|++++|.++++.......+ ..+++..-+
T Consensus 150 -~~~A~~~~~~a~~~-~p-~~~~~~----~~~a~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~~ 210 (308)
T 2ond_A 150 -IKSGRMIFKKARED-AR-TRHHVY----VTAALMEYYCSKDKSVAFKIFELGLKKYGD------------IPEYVLAYI 210 (308)
T ss_dssp -HHHHHHHHHHHHTS-TT-CCTHHH----HHHHHHHHHTSCCHHHHHHHHHHHHHHHTT------------CHHHHHHHH
T ss_pred -HHHHHHHHHHHHhc-CC-CCHHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------cHHHHHHHH
Confidence 22233333333321 00 111122 234444332 69999999999988877431 135566667
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhh
Q 014143 190 QMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (430)
Q Consensus 190 ~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (430)
.++...|++.+|+.+++++.... ..+|.-...++..-+.+....|++.+|...+..+.+.+.
T Consensus 211 ~~~~~~g~~~~A~~~~~~al~~~--~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 211 DYLSHLNEDNNTRVLFERVLTSG--SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHSS--SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 78888999999999999986531 113333344555556666778899999988888876553
No 119
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.014 Score=46.34 Aligned_cols=96 Identities=13% Similarity=0.030 Sum_probs=76.8
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
...+|..+...|+|++|...+.+....... ....+...+.++...|++.+|...++++.....
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----- 69 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP----- 69 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----
Confidence 357899999999999999999998887321 236777788899999999999999999976532
Q ss_pred hhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 219 ~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
.. ...+...|.++...|+|.+|...|..+.+..
T Consensus 70 ~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 70 NF-VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp TC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 21 2344556888999999999999999997654
No 120
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.14 E-value=0.034 Score=46.42 Aligned_cols=118 Identities=14% Similarity=0.156 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 132 (430)
....+...|..+++.|+|+++++.|...+..+ +.... ...|+ .+. . .. ..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~-~~~~~--------------~~~~~--~~~---~-----~~-----~~ 59 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRL-DTLIL--------------REKPG--EPE---W-----VE-----LD 59 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHHH--------------TSCTT--SHH---H-----HH-----HH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhcc--------------cCCCC--HHH---H-----HH-----HH
Confidence 46788999999999999999999999998876 32110 11233 100 0 00 01
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
.....+...+|..|...|+|++|...+......-. .....+...+.++..+|++.+|...++++..+.
T Consensus 60 ~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p------------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 60 RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE------------TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC------------cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 12224456899999999999999999999887721 134567777889999999999999999987663
No 121
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.12 E-value=0.012 Score=49.38 Aligned_cols=97 Identities=7% Similarity=0.015 Sum_probs=78.1
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014143 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (430)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~ 217 (430)
....+|..+...|+|++|...+.+...... ....++...+.++...|++.+|...++++..+..
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---- 76 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAP------------ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP---- 76 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----
Confidence 345889999999999999999999988732 1246677778899999999999999999976632
Q ss_pred chhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 218 ~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
. ....+...|.++...++|.+|..+|..+.+..
T Consensus 77 -~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 77 -K-YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp -T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 2 12345556889999999999999999998754
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.12 E-value=0.01 Score=51.75 Aligned_cols=135 Identities=12% Similarity=0.044 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhh
Q 014143 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (430)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl 134 (430)
..+..++..+...|+++++++.|...+ . |+ .
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~------------------------~-~~--~---------------------- 37 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ------------------------D-PH--S---------------------- 37 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS------------------------S-CC--H----------------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc------------------------C-CC--h----------------------
Confidence 345678889999999999988775431 0 11 0
Q ss_pred HHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014143 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (430)
Q Consensus 135 ~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~ 214 (430)
.+...+|.++...|++++|.+.+.+...... .....+...+.++...|++.+|...++++......
T Consensus 38 --~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 103 (213)
T 1hh8_A 38 --RICFNIGCMYTILKNMTEAEKAFTRSINRDK------------HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103 (213)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------------cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Confidence 1234889999999999999999999887732 12456677788999999999999999999765433
Q ss_pred CC----------CchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 215 IP----------HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 215 ~~----------~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
.. ........+...|.++...|+|.+|..+|..+.+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 104 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 21 111123455667889999999999999999997654
No 123
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.12 E-value=0.011 Score=49.74 Aligned_cols=98 Identities=10% Similarity=0.015 Sum_probs=78.5
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014143 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (430)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~ 216 (430)
.....+|..+...|+|++|...++.+...-+ ...+.+...+.++...|++.+|...|+++..+.+..
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P------------~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~- 103 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF------------YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND- 103 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC-
Confidence 3456899999999999999999999988732 124567777889999999999999999998765332
Q ss_pred CchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 217 ~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
|. .+...|..+...|+|.+|...|..+....
T Consensus 104 -~~----~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 104 -YT----PVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp -CH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -cH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 22 34455888999999999999999998754
No 124
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.09 E-value=0.017 Score=48.05 Aligned_cols=112 Identities=10% Similarity=0.005 Sum_probs=82.9
Q ss_pred HHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHH
Q 014143 38 GFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLRE 117 (430)
Q Consensus 38 ~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~ 117 (430)
.|+++++.+|+ ...++..++..+...|+++++.+.|...+..- |+ +.
T Consensus 9 ~~~~al~~~p~----~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----------------------p~-~~----- 55 (148)
T 2vgx_A 9 TIAMLNEISSD----TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-----------------------HY-DS----- 55 (148)
T ss_dssp SHHHHTTCCHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH-----
T ss_pred hHHHHHcCCHh----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----------------------cc-cH-----
Confidence 45566666543 25677889999999999999999988776642 32 00
Q ss_pred HHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcC
Q 014143 118 FYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN 197 (430)
Q Consensus 118 ~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d 197 (430)
.....+|.++...|+|++|.+.+........+ + .+.+...+.++...|+
T Consensus 56 -------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-----~-------~~~~~~lg~~~~~~g~ 104 (148)
T 2vgx_A 56 -------------------RFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-----E-------PRFPFHAAECLLQXGE 104 (148)
T ss_dssp -------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----C-------THHHHHHHHHHHHTTC
T ss_pred -------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-----C-------chHHHHHHHHHHHcCC
Confidence 01237888999999999999999998877321 1 2455666788999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 014143 198 NKKLKQLYQKALAIKS 213 (430)
Q Consensus 198 ~~ka~~~l~~a~~~~~ 213 (430)
+.+|...++++.....
T Consensus 105 ~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 105 LAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCc
Confidence 9999999999877654
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.07 E-value=0.018 Score=48.44 Aligned_cols=100 Identities=12% Similarity=0.057 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 132 (430)
...++..++..+.+.|+++++.+.|+..+..- |+ +.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----------------------P~-~~-------------------- 70 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-----------------------FY-NV-------------------- 70 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH--------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------CC-CH--------------------
Confidence 46788999999999999999999999887753 33 11
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
.....||..+...|+|++|...+.+....-++ ..+.+...+.++..+|++.+|...++++....
T Consensus 71 ----~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~------------~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 71 ----DYIMGLAAIYQIKEQFQQAADLYAVAFALGKN------------DYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 01347899999999999999999999888431 13466677889999999999999999997653
No 126
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.06 E-value=0.014 Score=46.78 Aligned_cols=96 Identities=9% Similarity=0.051 Sum_probs=76.7
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
...+|..+...|+|++|...+......... ...++...+.++...|++.+|...++++.....
T Consensus 12 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p----- 74 (137)
T 3q49_B 12 LKEQGNRLFVGRKYPEAAACYGRAITRNPL------------VAVYYTNRALCYLKMQQPEQALADCRRALELDG----- 74 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhhCcC------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-----
Confidence 458899999999999999999998887321 245677778899999999999999999876532
Q ss_pred hhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 219 ~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
. ....+...|.++...++|.+|...|..+....
T Consensus 75 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 75 Q-SVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred h-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 2 12344556888999999999999999998654
No 127
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.06 E-value=0.014 Score=47.93 Aligned_cols=112 Identities=10% Similarity=0.027 Sum_probs=80.0
Q ss_pred HHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHH
Q 014143 38 GFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLRE 117 (430)
Q Consensus 38 ~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~ 117 (430)
.|.++++.+|+ ...++..++..+...|+++++.+++...+..- |+ +.
T Consensus 6 ~l~~al~~~p~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----------------------p~-~~----- 52 (142)
T 2xcb_A 6 TLAMLRGLSED----TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-----------------------HY-DA----- 52 (142)
T ss_dssp ---CCTTCCHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH-----
T ss_pred hHHHHHcCCHH----HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-----------------------Cc-cH-----
Confidence 45555555543 25667788999999999999999988776642 32 01
Q ss_pred HHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcC
Q 014143 118 FYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN 197 (430)
Q Consensus 118 ~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d 197 (430)
.....+|.++...|+|++|...+......-.+ + .+.+...+.++...|+
T Consensus 53 -------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~-------~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 53 -------------------RYFLGLGACRQSLGLYEQALQSYSYGALMDIN-----E-------PRFPFHAAECHLQLGD 101 (142)
T ss_dssp -------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------THHHHHHHHHHHHTTC
T ss_pred -------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-----C-------cHHHHHHHHHHHHcCC
Confidence 01237888899999999999999988877321 1 2455666788889999
Q ss_pred HHHHHHHHHHHHhhhc
Q 014143 198 NKKLKQLYQKALAIKS 213 (430)
Q Consensus 198 ~~ka~~~l~~a~~~~~ 213 (430)
+.+|...++++.....
T Consensus 102 ~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 102 LDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999998876654
No 128
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.05 E-value=0.013 Score=60.10 Aligned_cols=123 Identities=11% Similarity=0.023 Sum_probs=95.5
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|++.++.++++ ..++..++.+|...|+++++.+++++.+... |
T Consensus 36 ~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------------------p 88 (568)
T 2vsy_A 36 MGDTTAGEMAVQRGLALHPGH----PEAVARLGRVRWTQQRHAEAAVLLQQASDAA-----------------------P 88 (568)
T ss_dssp HTCHHHHHHHHHHHHTTSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------T
T ss_pred cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----------------------C
Confidence 467999999999999988754 5678899999999999999999998887752 2
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
+ +. .....+|.++...|++++|.+.+++......+ ..+.+...
T Consensus 89 ~-~~------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l 131 (568)
T 2vsy_A 89 E-HP------------------------GIALWLGHALEDAGQAEAAAAAYTRAHQLLPE------------EPYITAQL 131 (568)
T ss_dssp T-CH------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHH
T ss_pred C-CH------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHH
Confidence 2 00 01347888999999999999999988877321 13455666
Q ss_pred HHHHHhh---cCHHHHHHHHHHHHhhhccC
Q 014143 189 IQMYTET---KNNKKLKQLYQKALAIKSAI 215 (430)
Q Consensus 189 ~~l~~~~---~d~~ka~~~l~~a~~~~~~~ 215 (430)
+.++... |++.+|...++++.......
T Consensus 132 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 132 LNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 7788888 99999999999887665443
No 129
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.03 E-value=0.0062 Score=64.42 Aligned_cols=117 Identities=9% Similarity=0.038 Sum_probs=91.7
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|.+.++.++++ ..++..++.+|...|+++++.+.|++.+... |
T Consensus 446 ~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----------------------P 498 (681)
T 2pzi_A 446 LGDVAKATRKLDDLAERVGWR----WRLVWYRAVAELLTGDYDSATKHFTEVLDTF-----------------------P 498 (681)
T ss_dssp HTCHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----------------------T
T ss_pred cCCHHHHHHHHHHHhccCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------C
Confidence 467999999999999887754 5788899999999999999999999888763 3
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHH
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~ 188 (430)
+.. .....+|.++...|+|++ .+.+++....-. ...+.+...
T Consensus 499 ~~~-------------------------~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P------------~~~~a~~~l 540 (681)
T 2pzi_A 499 GEL-------------------------APKLALAATAELAGNTDE-HKFYQTVWSTND------------GVISAAFGL 540 (681)
T ss_dssp TCS-------------------------HHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT------------TCHHHHHHH
T ss_pred CCh-------------------------HHHHHHHHHHHHcCChHH-HHHHHHHHHhCC------------chHHHHHHH
Confidence 310 012478888899999999 888888877621 123566777
Q ss_pred HHHHHhhcCHHHHHHHHHHHHh
Q 014143 189 IQMYTETKNNKKLKQLYQKALA 210 (430)
Q Consensus 189 ~~l~~~~~d~~ka~~~l~~a~~ 210 (430)
+.++...|++.+|...|+++..
T Consensus 541 g~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 541 ARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHHcCCHHHHHHHHHhhcc
Confidence 8889999999999999887653
No 130
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.00 E-value=0.027 Score=46.09 Aligned_cols=96 Identities=14% Similarity=0.064 Sum_probs=75.5
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
...+|..+...|+|++|...+..+...-+ .....+...+.++...|++.+|...++++...... +|
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~ 86 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDH------------YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN--EP 86 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CT
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCC------------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--Cc
Confidence 45789999999999999999999887622 12356667778899999999999999999766432 22
Q ss_pred hhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 219 ~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
. .+...|.++...|+|.+|...|..+....
T Consensus 87 ~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 87 R----FPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp H----HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2 33455888999999999999999987654
No 131
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.96 E-value=0.0046 Score=61.71 Aligned_cols=104 Identities=10% Similarity=0.074 Sum_probs=78.3
Q ss_pred CCCHHHHHHHHHHhhcCCc----cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh
Q 014143 29 ETDPEGALAGFAEVVAMEP----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~----~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~ 104 (430)
.+++++|+..|++.++... ++-..+.+++.+|+.+|..+|+|+++..++++.+...+...
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l---------------- 374 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHY---------------- 374 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS----------------
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHc----------------
Confidence 4579999999999998543 33456899999999999999999999999999988763321
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCC
Q 014143 105 SGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT 172 (430)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~ 172 (430)
. |+.+. + .....+||.+|...|+|++|.+++++........-|.
T Consensus 375 G--~~Hp~------------~----------a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~ 418 (433)
T 3qww_A 375 P--VYSLN------------V----------ASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGK 418 (433)
T ss_dssp C--SSCHH------------H----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred C--CCChH------------H----------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCC
Confidence 1 22110 0 0124599999999999999999998887765443343
No 132
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.95 E-value=0.013 Score=58.28 Aligned_cols=104 Identities=14% Similarity=0.103 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHhhcCCc----cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh
Q 014143 29 ETDPEGALAGFAEVVAMEP----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~----~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~ 104 (430)
++++++|++.+++.++... ++-..+.+++.+++.+|..+|+|+++.+++.+.+...+...
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l---------------- 363 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF---------------- 363 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS----------------
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc----------------
Confidence 4579999999999998754 34456899999999999999999999999999998762221
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCC
Q 014143 105 SGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT 172 (430)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~ 172 (430)
. |+. . .......+||.+|...|+|++|.+++++........-|.
T Consensus 364 g--~~H-p---------------------~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~ 407 (429)
T 3qwp_A 364 P--GSH-P---------------------VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGR 407 (429)
T ss_dssp C--SSC-H---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred C--CCC-h---------------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 1 221 1 001124599999999999999999998887765444444
No 133
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.94 E-value=0.024 Score=47.13 Aligned_cols=96 Identities=11% Similarity=0.055 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
...+|..+...|+|++|...+..+...-.. ..+.+...+.++...|++.+|...++++...... +|
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~ 89 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHY------------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX--EP 89 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCcc------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--Cc
Confidence 458899999999999999999998877321 2345566778899999999999999999766432 12
Q ss_pred hhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 219 ~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
. .+...|.++...|++.+|...|..+.+..
T Consensus 90 ~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 90 R----FPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp H----HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred h----HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 2 33445888999999999999999987644
No 134
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.90 E-value=0.044 Score=54.79 Aligned_cols=145 Identities=10% Similarity=0.118 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 132 (430)
...++...+..|++.|+|++++..|...+... +... ....+... ...
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~-------------------~~~~~~~~-------------~~~ 313 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEY-------------------GLSEKESK-------------ASE 313 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCC-------------------SCCHHHHH-------------HHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccc-------------------cCChHHHH-------------HHH
Confidence 45688899999999999999999999998875 4321 10010000 011
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
.....+..++|..|...|+|++|...+.+....-. .....+...+.++..++++.+|...++++..+.
T Consensus 314 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p------------~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 314 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS------------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 22335567999999999999999999999988732 124567777889999999999999999997653
Q ss_pred ccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHH
Q 014143 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (430)
Q Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea 248 (430)
. ... ..+...|.++...+++.+|.+..+..
T Consensus 382 P-----~~~-~a~~~l~~~~~~~~~~~~a~~~~~~~ 411 (457)
T 1kt0_A 382 P-----QNK-AARLQISMCQKKAKEHNERDRRIYAN 411 (457)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-----CCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 211 12333466666777887777655443
No 135
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.89 E-value=0.045 Score=45.74 Aligned_cols=102 Identities=12% Similarity=0.070 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 132 (430)
....+..++.+++..|+|++++++|...+... |+ +.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----------------------p~-~~-------------------- 45 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-----------------------PA-NP-------------------- 45 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------------------TT-CH--------------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------Cc-CH--------------------
Confidence 47788999999999999999999998887753 22 00
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
.+...+|.+|...|+|++|...+........ .....+...+.++..+|++.+|...++++....
T Consensus 46 ----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 46 ----IYLSNRAAAYSASGQHEKAAEDAELATVVDP------------KYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 1234788999999999999999999887732 124567777888999999999999999987765
Q ss_pred cc
Q 014143 213 SA 214 (430)
Q Consensus 213 ~~ 214 (430)
..
T Consensus 110 p~ 111 (164)
T 3sz7_A 110 GN 111 (164)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.87 E-value=0.043 Score=42.79 Aligned_cols=96 Identities=9% Similarity=0.014 Sum_probs=75.3
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014143 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (430)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~ 217 (430)
....+|..+...|++++|...+.+....... ....+...+.++...|++.+|...+.++....
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----- 76 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPA------------NAVYFCNRAAAYSKLGNYAGAVQDCERAICID----- 76 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-----
Confidence 4558899999999999999999998877321 13566677888999999999999999887642
Q ss_pred chhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 218 ~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
|.. ...+...|.++...++|.+|..+|.++...
T Consensus 77 ~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 77 PAY-SKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 111 234455688899999999999999998764
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.86 E-value=0.022 Score=44.96 Aligned_cols=95 Identities=13% Similarity=0.075 Sum_probs=75.0
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
...+|..+...|++++|.+.+.+...... ...+.+...+.++...|++.+|..+++++.....
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~------------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~----- 81 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNP------------KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP----- 81 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTCT------------TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----
Confidence 45889999999999999999999877622 1245667778889999999999999999876532
Q ss_pred hhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 219 ~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
. ....+...|.++...++|.+|..+|.++...
T Consensus 82 ~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 82 T-FIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 1 1234455688888999999999999998764
No 138
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.85 E-value=0.015 Score=46.01 Aligned_cols=93 Identities=14% Similarity=0.167 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|.++++..|++ .+...++..++.++...|+++++.+.+..++... |
T Consensus 15 ~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-----------------------p 70 (129)
T 2xev_A 15 NGKYDDASQLFLSFLELYPNG-VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-----------------------P 70 (129)
T ss_dssp TTCHHHHHHHHHHHHHHCSSS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------T
T ss_pred hCCHHHHHHHHHHHHHHCCCC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-----------------------C
Confidence 567999999999999887753 3345788899999999999999999999887754 2
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~ 167 (430)
+... .......+|.++...|++++|...++++....+
T Consensus 71 ~~~~----------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 71 THDK----------------------AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp TSTT----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred CCcc----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 2100 001235789999999999999999999988753
No 139
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.85 E-value=0.033 Score=48.22 Aligned_cols=116 Identities=13% Similarity=0.117 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 132 (430)
....+..++..++..|+|+++++.|.+.+... +.. |+..... +.. ...
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~-------------------~~~~~~~-----------~~~-~~~ 84 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHT-------------------EEWDDQI-----------LLD-KKK 84 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTC-------------------TTCCCHH-----------HHH-HHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcc-------------------cccchhh-----------HHH-HHH
Confidence 46678889999999999999999999988865 321 1111100 000 011
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
.+...+...+|..+...|+|++|...+........ .....+...+.++...|++.+|...+.++....
T Consensus 85 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 85 NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK------------NNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc------------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 12234566899999999999999999999888732 123566777889999999999999999987653
No 140
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.80 E-value=0.24 Score=43.51 Aligned_cols=179 Identities=7% Similarity=0.089 Sum_probs=116.1
Q ss_pred HHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCC--
Q 014143 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS-- 109 (430)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~-- 109 (430)
..+|++.|++..+.. ...++..++.+|...+++++++++|++.... . .......+-..+.. .+
T Consensus 2 ~~eA~~~~~~aa~~g------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g------~~~a~~~lg~~y~~-~g~~ 66 (212)
T 3rjv_A 2 ATEPGSQYQQQAEAG------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--G------DGDALALLAQLKIR-NPQQ 66 (212)
T ss_dssp --CTTHHHHHHHHTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--T------CHHHHHHHHHHTTS-STTS
T ss_pred CchHHHHHHHHHHCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--C------CHHHHHHHHHHHHc-CCCC
Confidence 356888888886542 2578899999999999999999999988663 1 12233344444443 21
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHH----hccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHH
Q 014143 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVY 185 (430)
Q Consensus 110 ~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~----~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~ 185 (430)
.+.+....+++.+.+ . -.......||.+|.. .+++++|.+++...-..-. . ....+.+
T Consensus 67 ~~~~~A~~~~~~A~~---~-----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~-----~-----~~~~~a~ 128 (212)
T 3rjv_A 67 ADYPQARQLAEKAVE---A-----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE-----S-----DAAVDAQ 128 (212)
T ss_dssp CCHHHHHHHHHHHHH---T-----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT-----S-----HHHHHHH
T ss_pred CCHHHHHHHHHHHHH---C-----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC-----C-----cchHHHH
Confidence 134444455555432 1 122345689999988 7899999999988765511 0 0124555
Q ss_pred HHHHHHHHh----hcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhh------hhcHHHHHHHHHHHHH
Q 014143 186 AIEIQMYTE----TKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA------ERQWADAATDFFEAFK 250 (430)
Q Consensus 186 l~~~~l~~~----~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~y~~A~~~f~ea~~ 250 (430)
.....+|.. .+|+.+|..+++++.... .+|. +.+ ..|.++.. .+|+.+|..+|..+.+
T Consensus 129 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~---~~~~--a~~--~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 129 MLLGLIYASGVHGPEDDVKASEYFKGSSSLS---RTGY--AEY--WAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS---CTTH--HHH--HHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC---CCHH--HHH--HHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 566677777 789999999999986541 1222 222 22555543 3389999999999865
No 141
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.78 E-value=0.023 Score=43.58 Aligned_cols=95 Identities=13% Similarity=0.046 Sum_probs=73.7
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
...+|..+...|++++|...+.+....... ....+...+.++...|++.+|...++++.....
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----- 69 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPH------------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP----- 69 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCC------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-----
Confidence 457899999999999999999998877321 135666777889999999999999998876532
Q ss_pred hhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 219 ~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
. ....+...|.++...++|.+|...|..+.+.
T Consensus 70 ~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 70 D-WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred c-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 1 1223445578888999999999999988753
No 142
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.78 E-value=0.017 Score=46.26 Aligned_cols=93 Identities=6% Similarity=-0.032 Sum_probs=73.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCch
Q 014143 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (430)
Q Consensus 140 ~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~ 219 (430)
..+|..+...|++++|...++.....-. ...+.+...+.++...|++.+|...++++..... .
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-----~ 83 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEP------------EREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-----K 83 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----C
Confidence 4788999999999999999999888732 1245667778889999999999999999876532 2
Q ss_pred hHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 220 IMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 220 ~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
. ...+...|.++...|++.+|...|..+.+
T Consensus 84 ~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 84 D-IAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 12344558888899999999999988765
No 143
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.77 E-value=0.026 Score=45.57 Aligned_cols=99 Identities=10% Similarity=-0.040 Sum_probs=77.3
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014143 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (430)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~ 217 (430)
....+|..+...|+|++|.+.+.+...... ++ ......+...+.++...+++.+|...++++...... +
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-----~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~ 98 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLDA-----TP----QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG--D 98 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSCC-----CH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--C
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHcc-----cc----hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc--C
Confidence 345889999999999999999999987632 11 234677778888999999999999999998765321 1
Q ss_pred chhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 218 ~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
...+...|.++...++|.+|...|.++...
T Consensus 99 ----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 99 ----VKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 234455688888999999999999998764
No 144
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.76 E-value=0.011 Score=45.17 Aligned_cols=97 Identities=6% Similarity=-0.018 Sum_probs=74.7
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
...+|..+...|++++|...+.+....... ....+...+.++...|++.+|...++++......
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---- 72 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPE------------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIED---- 72 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC----
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc----
Confidence 457899999999999999999998877321 1345667788899999999999999998765322
Q ss_pred hhHHHHHHhhhHhhhhh-hcHHHHHHHHHHHHHh
Q 014143 219 RIMGIIRECGGKMHMAE-RQWADAATDFFEAFKN 251 (430)
Q Consensus 219 ~~~~~~~~~~g~~~~~~-~~y~~A~~~f~ea~~~ 251 (430)
......+...|.++... ++|.+|..+|..+...
T Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 73 EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 11223455568888899 9999999999888654
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.75 E-value=0.026 Score=44.50 Aligned_cols=28 Identities=7% Similarity=0.049 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSC 166 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~ 166 (430)
...+|.++...|++++|.+.+.+.....
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 4588999999999999999999988773
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.045 Score=43.33 Aligned_cols=99 Identities=9% Similarity=0.080 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 014143 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (430)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~k 133 (430)
...+...|..+++.|+++++++.|...+... |+ +.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----------------------p~-~~--------------------- 38 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-----------------------PE-DA--------------------- 38 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH---------------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------------------CC-Ch---------------------
Confidence 5678889999999999999999998887753 32 00
Q ss_pred hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 134 l~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
.....+|..+...|+|++|...+.+....-. .....+...+.++...|++.+|...++++....
T Consensus 39 ---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 39 ---RGYSNRAAALAKLMSFPEAIADCNKAIEKDP------------NFVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------------CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 1234789999999999999999999887732 124567777889999999999999999987664
No 147
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=96.68 E-value=0.004 Score=44.83 Aligned_cols=58 Identities=12% Similarity=0.232 Sum_probs=52.6
Q ss_pred HHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCC
Q 014143 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (430)
Q Consensus 345 ~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (430)
.+..+++.-+.+.+++||..||++.+++-.-|-.+..+|+|.|.||-..+.|++++..
T Consensus 11 ~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~eE 68 (72)
T 1wi9_A 11 EFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPSG 68 (72)
T ss_dssp HHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCSS
T ss_pred HHHHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHHH
Confidence 4466778889999999999999999999999999999999999999999999988653
No 148
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.66 E-value=0.045 Score=53.21 Aligned_cols=142 Identities=13% Similarity=0.082 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 132 (430)
....+..++..+++.|+|+++++.|++.+... +... . . .. . ... ....
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~-~~~~------------~---~-~~--~---~~~----------~~~~ 269 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV-EGSR------------A---A-AE--D---ADG----------AKLQ 269 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHH------------H---H-SC--H---HHH----------GGGH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-hcCc------------c---c-cC--h---HHH----------HHHH
Confidence 35678889999999999999999999999876 3321 0 0 00 0 000 0011
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
.....+..++|..|...|+|++|.+.+.+....-. .....+...+.++..++++.+|...++++....
T Consensus 270 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p------------~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 270 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP------------SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 12224566899999999999999999999987621 124566777889999999999999999997664
Q ss_pred ccCCCchhHHHHHHhhhHhhhhhhcHHHHHHH
Q 014143 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATD 244 (430)
Q Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~ 244 (430)
.. ++. ++...+.++...+++.++.+.
T Consensus 338 P~--~~~----~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 338 PE--DKA----IQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TT--CHH----HHHHHHHHHHHHHHHHHHHHC
T ss_pred CC--CHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 22 222 222234444455555555443
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.66 E-value=0.028 Score=53.69 Aligned_cols=119 Identities=9% Similarity=0.086 Sum_probs=88.2
Q ss_pred CCCHHHHHHHHHHhhcCCccch-----------hhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 014143 29 ETDPEGALAGFAEVVAMEPEKA-----------EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI 97 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~-----------~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v 97 (430)
.+++++|++.|.+.++..++.. .....++.+++.+|.+.|+++++++++...+...
T Consensus 160 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~------------- 226 (336)
T 1p5q_A 160 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD------------- 226 (336)
T ss_dssp HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------
Confidence 5679999999999998876431 2225788899999999999999999998887753
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhh
Q 014143 98 NNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKK 177 (430)
Q Consensus 98 ~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~ 177 (430)
|+ +. ....++|.+|...|++++|...+++....... +
T Consensus 227 ----------p~-~~------------------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-----~--- 263 (336)
T 1p5q_A 227 ----------SN-NE------------------------KGLSRRGEAHLAVNDFELARADFQKVLQLYPN-----N--- 263 (336)
T ss_dssp ----------TT-CH------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-----C---
T ss_pred ----------CC-cH------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-----C---
Confidence 32 00 12348899999999999999999999887321 1
Q ss_pred cchHHHHHHHHHHHHHhhcCHHHH-HHHHHH
Q 014143 178 GSQLLEVYAIEIQMYTETKNNKKL-KQLYQK 207 (430)
Q Consensus 178 ~~~~~e~~l~~~~l~~~~~d~~ka-~~~l~~ 207 (430)
...+.....++...+++.++ +..|.+
T Consensus 264 ----~~a~~~l~~~~~~~~~~~~a~~~~~~~ 290 (336)
T 1p5q_A 264 ----KAAKTQLAVCQQRIRRQLAREKKLYAN 290 (336)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24555566777788888777 344443
No 150
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.65 E-value=0.027 Score=47.01 Aligned_cols=108 Identities=12% Similarity=0.073 Sum_probs=78.6
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhccCC-----CCCcch-hhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQRE-----DGTDDQ-KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~-----~~~~d~-~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
....+|..++..|+|++|...+.+....+... +...+. ........++...+..+..+|++.+|...++++..+
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 34588999999999999999888877763211 000000 001345678888889999999999999999998766
Q ss_pred hccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 212 KSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 212 ~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
. |.. ...+...|.++...|+|.+|..+|..+...
T Consensus 93 ~-----p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 E-----ETN-EKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp S-----TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-----Ccc-hHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3 221 234455688999999999999999999764
No 151
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=96.65 E-value=0.11 Score=52.67 Aligned_cols=188 Identities=12% Similarity=0.072 Sum_probs=117.1
Q ss_pred HHHHHHHHhhc-CCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCCh
Q 014143 34 GALAGFAEVVA-MEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNF 112 (430)
Q Consensus 34 ~Ai~~~~~ii~-~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~ 112 (430)
+|++.|...++ ..|+. ..+....+.++.+.|+++++.+.|...+... +... +.+....+.....
T Consensus 304 ~A~~~~~~Al~~~~p~~----~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~----~~~~~~~~~~~~~------ 368 (530)
T 2ooe_A 304 EAANIYERAISTLLKKN----MLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDP----TLVYIQYMKFARR------ 368 (530)
T ss_dssp HHHHHHHHHTTTTCSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCH----HHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHhCccc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCc----hHHHHHHHHHHHH------
Confidence 89999999987 55543 4566778899999999999999999998853 3211 1122222222211
Q ss_pred hHHHHHHHHHHHHHHHhhh-hhhHHHHhHHHHHH-HHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHH
Q 014143 113 SLLREFYQTTLKALEEAKN-ERLWFKTNLKLCKI-WFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ 190 (430)
Q Consensus 113 ~~~~~~~~~~~e~l~~~~~-~kl~~r~~~~La~~-~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~ 190 (430)
..-++.+++.++.+.. ......+....+.+ +...|++++|.+++........+ + .+++..-+.
T Consensus 369 ---~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-----~-------~~~~~~~~~ 433 (530)
T 2ooe_A 369 ---AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-----I-------PEYVLAYID 433 (530)
T ss_dssp ---HHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-----C-------HHHHHHHHH
T ss_pred ---hcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-----C-------HHHHHHHHH
Confidence 1112233333332210 00011222233333 33589999999999988877531 1 355566677
Q ss_pred HHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhh
Q 014143 191 MYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (430)
Q Consensus 191 l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (430)
+....|+..+|+.+++++..... .+|.....++..-+.+....|+..++...+..+.+.+.
T Consensus 434 ~~~~~g~~~~Ar~~~~~al~~~~--~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 434 YLSHLNEDNNTRVLFERVLTSGS--LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHTTTTCHHHHHHHHHHHHHSCC--SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHhCCCHhhHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 78889999999999999865421 14544445555445555567888888888888877664
No 152
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.58 E-value=0.35 Score=48.23 Aligned_cols=178 Identities=11% Similarity=0.089 Sum_probs=109.2
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYR----LGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~----~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~ 104 (430)
..|+++|++.|++..+.. ...+...++.+|.. .++++++.++|.+.... + .. .....+...+
T Consensus 56 ~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~-~~-----~a~~~Lg~~y 121 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--G-LP-----QAQQNLGVMY 121 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T-CH-----HHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C-CH-----HHHHHHHHHH
Confidence 568999999999987652 14688899999999 99999999999988663 1 11 1122222222
Q ss_pred cCCC--CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHH----hccHHHHHHHHHHHHhhccCCCCCcchhhc
Q 014143 105 SGSA--SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (430)
Q Consensus 105 ~~~~--~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~----~g~~~~A~~~l~el~~~~~~~~~~~d~~~~ 178 (430)
.... ..+.+....+++.+.+. + .......||.+|.. .+++++|.+.++..... | +
T Consensus 122 ~~g~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-----~--~---- 182 (490)
T 2xm6_A 122 HEGNGVKVDKAESVKWFRLAAEQ----G----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-----G--N---- 182 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T--C----
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----C--C----
Confidence 2211 11244444555544331 1 12345588888887 78899998888877554 1 1
Q ss_pred chHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhh----hhcHHHHHHHHHHHHH
Q 014143 179 SQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA----ERQWADAATDFFEAFK 250 (430)
Q Consensus 179 ~~~~e~~l~~~~l~~~----~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~y~~A~~~f~ea~~ 250 (430)
.+.+.....+|.. .+|+.+|..+++++... .+|. + ....|.++.. .+|+.+|..+|..+.+
T Consensus 183 ---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~--a--~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 183 ---VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS----GDEL--G--QLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp ---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHH--H--HHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----CCHH--H--HHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 1233344455665 67888888888877542 1222 1 1122444443 6778888777777654
No 153
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.51 E-value=0.047 Score=42.16 Aligned_cols=96 Identities=14% Similarity=0.161 Sum_probs=73.0
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014143 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (430)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~ 217 (430)
....+|..+...|++++|.+.+.+....... ....+...+.++...|++.+|..+++++...... +
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~ 76 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--N 76 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--c
Confidence 3457899999999999999999998876321 1345666778899999999999999988654211 1
Q ss_pred chhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 218 ~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
+ ..+...|.++...++|.+|...|.++...
T Consensus 77 ~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 77 A----EAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp H----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 2 23344578888899999999999988764
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.50 E-value=0.039 Score=47.74 Aligned_cols=108 Identities=16% Similarity=0.013 Sum_probs=79.2
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCc----chhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 014143 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTD----DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (430)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~----d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~ 213 (430)
....+|..++..|+|++|.+.+.+........+... +.........++...+.++...|++.+|..+++++....
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 345889999999999999999999988754321100 000011234777788889999999999999999987653
Q ss_pred cCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 214 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 214 ~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
|. ....+...|.++...++|.+|..+|..+...
T Consensus 119 ----p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 119 ----KN-NVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp ----TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----cc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 22 1234455688899999999999999998764
No 155
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.49 E-value=0.21 Score=47.24 Aligned_cols=127 Identities=12% Similarity=0.074 Sum_probs=81.2
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHhhhcc
Q 014143 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK--NNKKLKQLYQKALAIKSA 214 (430)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~--d~~ka~~~l~~a~~~~~~ 214 (430)
.+...++++++..|+.+.|.+.+++++..-. |..+...-+-+.+.++.+.+..| ++..|-.+|+.... .
T Consensus 137 ea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~------d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~ 207 (310)
T 3mv2_B 137 ELLLLAIEVALLNNNVSTASTIFDNYTNAIE------DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---T 207 (310)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC------HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---T
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc------cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---h
Confidence 3455889999999999999999999987721 00001124556777776676666 89999888887532 2
Q ss_pred CCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhh-----hcchhHHHHHHHHHHHHHhhCC
Q 014143 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE-----AGNQRRIQCLKYLVLANMLMES 276 (430)
Q Consensus 215 ~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~-----~~~~~~~~~lky~~l~~lL~~~ 276 (430)
.+++.....+ +. .++..|+|.+|...+......+.+ ..+|.-.+++..++.+..+.++
T Consensus 208 ~p~~~~~~lL--ln--~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 208 FPTWKTQLGL--LN--LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp SCSHHHHHHH--HH--HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred CCCcccHHHH--HH--HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 2221111111 11 688899999999998765444322 1134456678777777766554
No 156
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=96.49 E-value=0.25 Score=45.93 Aligned_cols=184 Identities=9% Similarity=0.061 Sum_probs=104.0
Q ss_pred HHHHHHHHHhhcCCccchhhhHHHHHHHHHHH-------HHhCCH-------HHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 014143 33 EGALAGFAEVVAMEPEKAEWGFKALKQTVKLY-------YRLGKY-------KEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (430)
Q Consensus 33 ~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~-------~~~~~~-------~~l~e~~~~l~~~~~~~~~k~~~~k~v~ 98 (430)
+.|+..|++.++..|.+ ..+....+.++ .+.|++ +++.+.|...+..+.+.- ..+-.
T Consensus 33 ~~a~~~~~~al~~~p~~----~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~-----~~~~~ 103 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHH----PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN-----MLLYF 103 (308)
T ss_dssp HHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC-----HHHHH
T ss_pred HHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc-----HHHHH
Confidence 78999999999887743 22334444444 356875 788888877776321221 11222
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhc
Q 014143 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (430)
Q Consensus 99 ~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~ 178 (430)
.......... +.+.....++.+++. .. .+.. .+...+|.++...|++++|.+++.........
T Consensus 104 ~~~~~~~~~~--~~~~A~~~~~~al~~-~p-~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~---------- 166 (308)
T 2ond_A 104 AYADYEESRM--KYEKVHSIYNRLLAI-ED-IDPT---LVYIQYMKFARRAEGIKSGRMIFKKAREDART---------- 166 (308)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHTS-SS-SCTH---HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC----------
T ss_pred HHHHHHHhcC--CHHHHHHHHHHHHhc-cc-cCcc---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC----------
Confidence 2222222211 233445555555441 11 0111 13446778888888888888888877665221
Q ss_pred chHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 179 SQLLEVYAIEIQMYT-ETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 179 ~~~~e~~l~~~~l~~-~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
. ..+++..+.+.. ..|++.+|..+++++.+.... ...++...|.++...|++.+|...|-.+..
T Consensus 167 ~--~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 167 R--HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD------IPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp C--THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1 233333333332 368888888888888655321 123444456666677888888888877765
No 157
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.48 E-value=0.069 Score=41.64 Aligned_cols=106 Identities=16% Similarity=0.233 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 132 (430)
...++..++.++...|+++++.+++...+... |+ +.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------------------~~-~~-------------------- 38 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD-----------------------PT-NM-------------------- 38 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH--------------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----------------------Cc-cH--------------------
Confidence 35678889999999999999999998877642 22 00
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
.+...+|.++...|++++|...+.+........++ + .......+...+.++...|++.+|..+++++...
T Consensus 39 ----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 39 ----TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE--D---YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT--C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccch--h---HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 12347889999999999999999988877532111 1 1233677788889999999999999999988764
No 158
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.47 E-value=0.13 Score=39.97 Aligned_cols=99 Identities=11% Similarity=0.097 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 132 (430)
...++..++..+...|+++++.+++...+... |+ +.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------------~~-~~-------------------- 46 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-----------------------PA-NA-------------------- 46 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH--------------------
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-----------------------CC-CH--------------------
Confidence 46788899999999999999999988776642 22 00
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
.....+|.++...|++++|.+.+.+....... ....+...+.++...|++.+|...+.++...
T Consensus 47 ----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 47 ----VYFCNRAAAYSKLGNYAGAVQDCERAICIDPA------------YSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 11347788888999999999999888876321 1345667778899999999999999988765
No 159
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.46 E-value=0.018 Score=45.44 Aligned_cols=90 Identities=9% Similarity=0.106 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (430)
.+++++|++.|++.++...++. ....++..++.+|...|+++++++++.+.+... |
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----------------------p 58 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGK-DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-----------------------P 58 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------T
T ss_pred CCcHHHHHHHHHHHHHcCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------C
Confidence 4578999999999998843222 246888999999999999999999998887753 3
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014143 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~ 167 (430)
+. . .....+|.++...|++++|...+.+......
T Consensus 59 ~~-~------------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 59 NH-Q------------------------ALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92 (117)
T ss_dssp TC-H------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred Cc-h------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 30 0 1134789999999999999999999887743
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.43 E-value=0.19 Score=39.94 Aligned_cols=102 Identities=13% Similarity=0.010 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 132 (430)
....+..++..++..|+++++.+.|...+... |+ +.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----------------------~~-~~-------------------- 43 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-----------------------PL-VA-------------------- 43 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH--------------------
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-----------------------cC-cH--------------------
Confidence 36788899999999999999999998887753 22 00
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
.....+|.++...|++++|...+........ .....+...+.++...|++.+|...+.++....
T Consensus 44 ----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 44 ----VYYTNRALCYLKMQQPEQALADCRRALELDG------------QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 1134789999999999999999999887732 124566777889999999999999999987665
Q ss_pred cc
Q 014143 213 SA 214 (430)
Q Consensus 213 ~~ 214 (430)
..
T Consensus 108 p~ 109 (137)
T 3q49_B 108 KE 109 (137)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 161
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.0056 Score=47.17 Aligned_cols=86 Identities=14% Similarity=0.045 Sum_probs=57.3
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
...+|..+...|+|++|.+.+.+....... ....+...+.++...|++.+|...++++........++
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 74 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQ------------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV 74 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHH
Confidence 457888999999999999999888877321 13556677788889999999999998887654333223
Q ss_pred hhHHHHHHhhhHhhhhhh
Q 014143 219 RIMGIIRECGGKMHMAER 236 (430)
Q Consensus 219 ~~~~~~~~~~g~~~~~~~ 236 (430)
...+......|..+...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~ 92 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVG 92 (111)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333344444333
No 162
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.36 E-value=0.0078 Score=60.77 Aligned_cols=118 Identities=11% Similarity=0.081 Sum_probs=83.6
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCC
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (430)
..+++++|++.|++.++.+++. ..++..++.+|.+.|+++++.+.+++.+...
T Consensus 18 ~~g~~~~A~~~~~~Al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----------------------- 70 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELD----------------------- 70 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-----------------------
T ss_pred HhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------------------
Confidence 3568999999999999987754 6788999999999999999999998776642
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHH
Q 014143 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (430)
Q Consensus 108 ~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~ 187 (430)
|+ +. .....+|.+|...|++++|.+.+++......+ + ......+.
T Consensus 71 p~-~~------------------------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-----~-----~~~~~~l~ 115 (477)
T 1wao_1 71 KK-YI------------------------KGYYRRAASNMALGKFRAALRDYETVVKVKPH-----D-----KDAKMKYQ 115 (477)
T ss_dssp TT-CH------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-----C-----TTHHHHHH
T ss_pred CC-CH------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C-----HHHHHHHH
Confidence 32 00 11347899999999999999999998887432 1 11222333
Q ss_pred HHHHHHhhcCHHHHHHHHHH
Q 014143 188 EIQMYTETKNNKKLKQLYQK 207 (430)
Q Consensus 188 ~~~l~~~~~d~~ka~~~l~~ 207 (430)
.+..+...|++.+|...+++
T Consensus 116 ~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 116 ECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHHhccccc
Confidence 34447778899999888873
No 163
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.35 E-value=0.35 Score=54.52 Aligned_cols=181 Identities=13% Similarity=0.152 Sum_probs=96.9
Q ss_pred hhcccCC-CCHHHHHHHHHHhhcCCc---cc--hhh-------------hHHH--------HHHHHHHHHHhCCHHHHHH
Q 014143 23 LEKGLVE-TDPEGALAGFAEVVAMEP---EK--AEW-------------GFKA--------LKQTVKLYYRLGKYKEMMD 75 (430)
Q Consensus 23 ~ak~~~~-~~~~~Ai~~~~~ii~~~~---~~--~~~-------------~~k~--------l~~l~~l~~~~~~~~~l~e 75 (430)
.+|.++. ++|.+|++.|++++-..+ +. ... .... ...++.++.+.|.++++.+
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~ 1070 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFA 1070 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHH
Confidence 3444444 469999999999984322 11 000 0001 1235788999999999999
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHH
Q 014143 76 AYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRM 155 (430)
Q Consensus 76 ~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A 155 (430)
+|++.-... +.+..+++.+. -++.+.+..+.+....+| .++|+.+++.|++++|
T Consensus 1071 IYkKa~~~~----------~A~~VLie~i~------------nldrAiE~Aervn~p~vW----sqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1071 IFRKFDVNT----------SAVQVLIEHIG------------NLDRAYEFAERCNEPAVW----SQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHcCCHH----------HHHHHHHHHHh------------hHHHHHHHHHhcCCHHHH----HHHHHHHHhCCCHHHH
Confidence 998864221 11112222221 111122222222333343 3677777777777777
Q ss_pred HHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC--------------------
Q 014143 156 SKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI-------------------- 215 (430)
Q Consensus 156 ~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~-------------------- 215 (430)
.+.+.+. ++ .+.+...+..+...|++..|-.+|..|++.....
T Consensus 1125 IdsYiKA----------dD-------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele 1187 (1630)
T 1xi4_A 1125 IDSYIKA----------DD-------PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELE 1187 (1630)
T ss_pred HHHHHhc----------CC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHH
Confidence 7766332 11 1223334566667777777777776665443110
Q ss_pred ---CCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHH
Q 014143 216 ---PHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (430)
Q Consensus 216 ---~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea 248 (430)
..+. .+.+ ..-|..+..+|+|.+|..+|..+
T Consensus 1188 ~fI~~~n-~ad~-~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1188 EFINGPN-NAHI-QQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHHhCCC-HHHH-HHHHHHHHhcCCHHHHHHHHHhh
Confidence 0011 0111 23567777788888888777766
No 164
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.33 E-value=0.1 Score=39.71 Aligned_cols=98 Identities=12% Similarity=0.109 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 014143 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (430)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~k 133 (430)
..++..++..+...|+++++.+.+...+... |+ +.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------------~~-~~--------------------- 38 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-----------------------PH-NH--------------------- 38 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH---------------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----------------------CC-cH---------------------
Confidence 5677889999999999999999988876642 22 00
Q ss_pred hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 134 l~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
.....+|.++...|++++|...+.+....... ..+.+...+.++...|++.+|...+.++...
T Consensus 39 ---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 39 ---VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------------WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 11347788889999999999999988877321 2355666778889999999999999888654
No 165
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.29 E-value=0.85 Score=45.34 Aligned_cols=48 Identities=8% Similarity=0.069 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHH----hCCHHHHHHHHHHHHH
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYR----LGKYKEMMDAYREMLT 82 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~----~~~~~~l~e~~~~l~~ 82 (430)
..|+++|++.|++..+... ..+...++.+|.. .++++++.+++.+...
T Consensus 200 ~~~~~~A~~~~~~a~~~~~------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSGD------ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 4567777777777655421 2345556666665 5666666666655543
No 166
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.25 E-value=0.024 Score=43.51 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~ 104 (430)
.+++++|++.|++.++.+|+. ..++..++.+|...|+++++.+.|.+.+... +..+......-+..++...
T Consensus 20 ~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-~~~~~~~~~~~l~~~l~~~ 90 (100)
T 3ma5_A 20 HDNASRALALFEELVETDPDY----VGTYYHLGKLYERLDRTDDAIDTYAQGIEVA-REEGTQKDLSELQDAKLKA 90 (100)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh-hcCCchhHHHHHHHHHHHc
Confidence 467999999999999988754 3478889999999999999999999999876 4444444444444454443
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.25 E-value=0.026 Score=45.15 Aligned_cols=86 Identities=14% Similarity=-0.012 Sum_probs=68.0
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCC
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (430)
..+++++|+..|++.++.+|++ ..++..++.++...|+++++++.+...+..-
T Consensus 29 ~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----------------------- 81 (121)
T 1hxi_A 29 KLANLAEAALAFEAVCQKEPER----EEAWRSLGLTQAENEKDGLAIIALNHARMLD----------------------- 81 (121)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HcCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------
Confidence 3567999999999999988754 5677889999999999999999988877753
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014143 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (430)
Q Consensus 108 ~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~ 165 (430)
|+ +. .....||.++...|++++|...+.+....
T Consensus 82 P~-~~------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 82 PK-DI------------------------AVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp TT-CH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CC-CH------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33 00 01347889999999999999999887765
No 168
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.24 E-value=0.039 Score=54.95 Aligned_cols=102 Identities=9% Similarity=-0.022 Sum_probs=79.1
Q ss_pred HhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC---CchhHHHH
Q 014143 148 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP---HPRIMGII 224 (430)
Q Consensus 148 ~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~---~~~~~~~~ 224 (430)
..|+|++|..++++........-|.+. ...+..+-..+.+|..+|+|.+|..++.++..+...++ ||.+-..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~H----p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~- 384 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSN----VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM- 384 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTS----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH-
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhc----hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH-
Confidence 457899999999888876555444432 45677788888999999999999999999987766654 4654333
Q ss_pred HHhhhHhhhhhhcHHHHHHHHHHHHHhhhh
Q 014143 225 RECGGKMHMAERQWADAATDFFEAFKNYDE 254 (430)
Q Consensus 225 ~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (430)
..-.|.++...|+|.+|...|.+|++.+..
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIAIMEV 414 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 334588899999999999999999877654
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.22 E-value=0.031 Score=42.42 Aligned_cols=89 Identities=16% Similarity=0.178 Sum_probs=68.5
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCC
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (430)
..+++++|+..|.+.++..+.+ ..++..++.++...|+++++.+.+...+...
T Consensus 18 ~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----------------------- 70 (112)
T 2kck_A 18 DAGNYTESIDLFEKAIQLDPEE----SKYWLMKGKALYNLERYEEAVDCYNYVINVI----------------------- 70 (112)
T ss_dssp SSCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----------------------
T ss_pred HhhhHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------------------
Confidence 3567999999999999887643 4567889999999999999999888776542
Q ss_pred CCC-ChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHh-ccHHHHHHHHHHHHhhcc
Q 014143 108 ASQ-NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDM-GEYGRMSKILKELHKSCQ 167 (430)
Q Consensus 108 ~~~-~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~-g~~~~A~~~l~el~~~~~ 167 (430)
|+. +. .+...+|.++... |++++|.+.+..+.....
T Consensus 71 ~~~~~~------------------------~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 71 EDEYNK------------------------DVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp CCTTCH------------------------HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred cccchH------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 110 00 1234788999999 999999999999987754
No 170
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.21 E-value=0.082 Score=46.30 Aligned_cols=94 Identities=16% Similarity=0.137 Sum_probs=72.1
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHH----------------HHHHHHhhcCHHHHHH
Q 014143 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI----------------EIQMYTETKNNKKLKQ 203 (430)
Q Consensus 140 ~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~----------------~~~l~~~~~d~~ka~~ 203 (430)
+..|..+.+.|+|++|...+.+....-++ ..+.+.. .+.++...|++.+|..
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNID------------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHH------------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 46788889999999999999988876321 1233334 6788999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 204 LYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 204 ~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
.++++....+ .- ...+...|.++...|+|.+|...|..+.+.
T Consensus 76 ~~~~al~~~p-----~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 76 FYKELLQKAP-----NN-VDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHHCT-----TC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-----CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999876532 21 223444588899999999999999999764
No 171
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.16 E-value=0.13 Score=51.15 Aligned_cols=108 Identities=9% Similarity=-0.001 Sum_probs=82.9
Q ss_pred HHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC---Cch
Q 014143 143 CKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP---HPR 219 (430)
Q Consensus 143 a~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~---~~~ 219 (430)
..-+...|+|++|.+++++........-|.+. ...+..+-..+.+|..+|+|.+|..++.++..+...++ ||.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h----~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~ 369 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDIN----IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 369 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTS----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccc----hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH
Confidence 33355779999999999988876555444432 45678888888999999999999999999987766544 465
Q ss_pred hHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhh
Q 014143 220 IMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA 255 (430)
Q Consensus 220 ~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~ 255 (430)
+- ....-.|.++...|+|.+|..+|.+|++.+...
T Consensus 370 ~a-~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~ 404 (429)
T 3qwp_A 370 RG-VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVT 404 (429)
T ss_dssp HH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 43 333445888999999999999999998877643
No 172
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.045 Score=50.91 Aligned_cols=151 Identities=13% Similarity=0.155 Sum_probs=97.2
Q ss_pred HHHhhhHhhhhhhcHHHHHHHHHHHHHhhhh-----hcchhHHHHHHHHHHHHHhhCCCCCCCCc------cccccCCCC
Q 014143 224 IRECGGKMHMAERQWADAATDFFEAFKNYDE-----AGNQRRIQCLKYLVLANMLMESEVNPFDG------QEAKPYKND 292 (430)
Q Consensus 224 ~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~-----~~~~~~~~~lky~~l~~lL~~~~~~~~~~------~~~~~~~~~ 292 (430)
+++.++++....+|+.+=-+++..-..-|.. ..++....++.|-+|+-+..++..+ |.. .......++
T Consensus 61 v~E~~a~~si~~~D~~~F~~~~~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLylL~~n~~~e-fh~~Le~L~~~~~~~~~d 139 (274)
T 4b4t_T 61 ILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTTK-FHSELQYLDKHIKNLEDD 139 (274)
T ss_dssp CHHHHHHCCSSCSSHHHHHHHHHHHHHHTTTTSSCSSCSHHHHHHHHHHHHHHHHHHCSTH-HHHHHHSSSCSSSTTTCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHHHHHcCCHHH-HHHHHHhcchhhHhHhcC
Confidence 4555666666666666555555554444432 1234556677777776654433211 211 011123346
Q ss_pred cchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCC-hHH
Q 014143 293 PEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVP-EKD 371 (430)
Q Consensus 293 ~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~-~~e 371 (430)
|.+..-..|.+++..|++.+|-++...... -.+...-.++.+..++|...+..+.+.|.+|+++.+++.|+++ .++
T Consensus 140 ~~Ik~al~le~al~eGnY~kff~l~~~~~~---p~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e 216 (274)
T 4b4t_T 140 SLLSYPIKLDRWLMEGSYQKAWDLLQSGSQ---NISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKE 216 (274)
T ss_dssp HHHHHHHHHHHHHHHTCSHHHHHHHHTCTT---CCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhcCCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHH
Confidence 667766789999999999999876654211 0122344567889999999999999999999999999999994 667
Q ss_pred HHHHHHH
Q 014143 372 VEQLLVS 378 (430)
Q Consensus 372 vE~~l~~ 378 (430)
+...+-+
T Consensus 217 ~~~F~~~ 223 (274)
T 4b4t_T 217 TEKFALE 223 (274)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766655
No 173
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.13 E-value=0.15 Score=39.09 Aligned_cols=99 Identities=19% Similarity=0.295 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 132 (430)
...++..++.++...|+++++.+++...+... |+ +.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------------~~-~~-------------------- 43 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----------------------PN-NA-------------------- 43 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH--------------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----------------------cC-cH--------------------
Confidence 35778889999999999999999888776542 22 00
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
.....+|.++...|++++|...+.+....... ....+...+.++...|++.+|..+++++...
T Consensus 44 ----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 44 ----EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 01236788889999999999999888776321 1245556678888999999999999888654
No 174
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.00 E-value=0.074 Score=44.82 Aligned_cols=97 Identities=13% Similarity=0.092 Sum_probs=74.0
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHH-HHhhcCH--HHHHHHHHHHHhhhcc
Q 014143 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM-YTETKNN--KKLKQLYQKALAIKSA 214 (430)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l-~~~~~d~--~ka~~~l~~a~~~~~~ 214 (430)
....+|.++...|++++|...+.+....... ....+...+.+ +...|++ .+|...++++.....
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p- 112 (177)
T 2e2e_A 46 QWALLGEYYLWQNDYSNSLLAYRQALQLRGE------------NAELYAALATVLYYQASQHMTAQTRAMIDKALALDS- 112 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS------------CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC-
Confidence 3458899999999999999999998887431 13455566666 7788998 999999998876532
Q ss_pred CCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 215 ~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
.. ...+...|.++...|+|.+|...|..++...
T Consensus 113 ----~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 113 ----NE-ITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp ----TC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred ----Cc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 11 2234456888899999999999999998754
No 175
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=95.93 E-value=0.12 Score=50.56 Aligned_cols=133 Identities=6% Similarity=-0.019 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 132 (430)
...++..++.++...|+++++++.|.+.+... |+ +.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-----------------------P~-~~-------------------- 131 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-----------------------AA-NY-------------------- 131 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-----------------------TT-CH--------------------
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-----------------------cc-CH--------------------
Confidence 35678889999999999999999998887753 33 10
Q ss_pred hhHHHHhHHHHHHHHHhcc-HHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 133 RLWFKTNLKLCKIWFDMGE-YGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~-~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
.....+|.++...|+ +++|...+.+....-. .....+.....++..+|++.+|...++++...
T Consensus 132 ----~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P------------~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l 195 (382)
T 2h6f_A 132 ----TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP------------KNYQVWHHRRVLVEWLRDPSQELEFIADILNQ 195 (382)
T ss_dssp ----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 012367888888996 9999999999988732 12456677778899999999999999999765
Q ss_pred hccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 212 KSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 212 ~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
.. .- ...+...|.++...|+|.+|..+|-.+.+.
T Consensus 196 dP-----~~-~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 196 DA-----KN-YHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp CT-----TC-HHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred Cc-----cC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 32 21 223445578888899999999999998763
No 176
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.93 E-value=0.11 Score=41.65 Aligned_cols=103 Identities=10% Similarity=0.090 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 132 (430)
....+..++..+...|+++++.++|...+... |+ . .
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----------------------~~--~----~--------------- 62 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD-----------------------AT--P----Q--------------- 62 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-----------------------CC--H----H---------------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----------------------cc--c----h---------------
Confidence 46788999999999999999999998776532 22 1 0
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
........+|..+...|++++|...+.+...... + ....+...+.++...|++.+|...++++....
T Consensus 63 -~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 63 -DQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG------G------DVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS------C------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc------c------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 0012245889999999999999999998877632 1 14566677888999999999999999887653
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.91 E-value=0.069 Score=51.86 Aligned_cols=107 Identities=11% Similarity=0.020 Sum_probs=77.6
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCC--CCcc--hhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQRED--GTDD--QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~--~~~d--~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~ 214 (430)
...+|..++..|+|++|.+.+++........+ ...+ ..........+...+.++..++++.+|..+++++....
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-- 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-- 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--
Confidence 45889999999999999998888877432100 0000 00013456788888899999999999999999997642
Q ss_pred CCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 215 ~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
|. ....+...|.++...++|.+|..+|.++.+.
T Consensus 304 ---p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 ---PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp ---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 22 1233445588899999999999999999764
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.84 E-value=0.027 Score=53.86 Aligned_cols=150 Identities=10% Similarity=0.058 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 132 (430)
....+...+..+++.|+|++++..|...+... +... .+.. .+ .... ....
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~-------------~~~~-~~----~~~~----~~~~------- 227 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM-GDDF-------------MFQL-YG----KYQD----MALA------- 227 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS-CHHH-------------HHTC-CH----HHHH----HHHH-------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-ccch-------------hhhh-cc----cHHH----HHHH-------
Confidence 45678889999999999999999999988865 3211 0110 00 0001 1011
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
+...+..++|..|...|+|++|...+........ .....+...+..+..+|++.+|...++++..+.
T Consensus 228 -l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p------------~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 228 -VKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE------------KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp -HHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred -HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 1113456899999999999999999999887732 124566777889999999999999999886543
Q ss_pred ccCCCchhHHHHHHhhhHh-hhhhhcHHHHHHHHHHHHHh
Q 014143 213 SAIPHPRIMGIIRECGGKM-HMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 213 ~~~~~~~~~~~~~~~~g~~-~~~~~~y~~A~~~f~ea~~~ 251 (430)
.. ++... ...+.+ ....+.+..+...|..+|..
T Consensus 295 p~--~~~a~----~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 295 PD--DKAIR----RELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ----------------------------------------
T ss_pred CC--CHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 22 12111 111222 22344556666666666543
No 179
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.82 E-value=0.11 Score=44.21 Aligned_cols=104 Identities=11% Similarity=0.127 Sum_probs=78.2
Q ss_pred CCCCHHHHHHHHHHhhcCCcc-------ch-hhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 014143 28 VETDPEGALAGFAEVVAMEPE-------KA-EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINN 99 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~-------~~-~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~ 99 (430)
..+++++|++.|.+.++.+|+ +. +....++.+.+.++.+.|+|+++++.+...+..|+...
T Consensus 23 ~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~----------- 91 (159)
T 2hr2_A 23 VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG----------- 91 (159)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc-----------
Confidence 356899999999999998775 21 11234888999999999999999999999988752221
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccC
Q 014143 100 IMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (430)
Q Consensus 100 il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~ 168 (430)
.-.|+ +.+.|++...++|..+...|++++|...+++.....++
T Consensus 92 -----e~~pd---------------------~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 92 -----ELNQD---------------------EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp -----CTTST---------------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----cCCCc---------------------hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 11132 22344444578999999999999999999999888654
No 180
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.82 E-value=0.067 Score=49.53 Aligned_cols=96 Identities=9% Similarity=0.045 Sum_probs=75.6
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
...+|..+...|+|++|...+.+...... ....++...+.++...|++.+|...++++... +|
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p 69 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNP------------LVAVYYTNRALCYLKMQQPEQALADCRRALEL-----DG 69 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----CT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CC
Confidence 35789999999999999999999888732 12456777788999999999999999988654 22
Q ss_pred hhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 219 ~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
.. ...+...|.++...|+|.+|...|..+.+..
T Consensus 70 ~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 70 QS-VKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp TC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 21 2234455888999999999999999997644
No 181
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.69 E-value=0.067 Score=40.22 Aligned_cols=73 Identities=21% Similarity=0.342 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFK-ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k-~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (430)
.+++++|++.|++.++.++++ .. ++..++.+|...|+++++.+.|...+... +.......-..+..++..+..
T Consensus 13 ~~~~~~A~~~~~~al~~~p~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~a~~~~~~ 86 (99)
T 2kc7_A 13 QGDIENALQALEEFLQTEPVG----KDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQARKMVMDILNFYNK 86 (99)
T ss_dssp HTCHHHHHHHHHHHHHHCSST----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 467999999999999987754 34 88899999999999999999999999875 543333333445555555543
No 182
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.54 E-value=0.29 Score=41.47 Aligned_cols=109 Identities=12% Similarity=-0.018 Sum_probs=78.5
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCc--chhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc-cCC
Q 014143 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTD--DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS-AIP 216 (430)
Q Consensus 140 ~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~--d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~-~~~ 216 (430)
..+|..++..|+|++|...+.+......+.+... +. .......+...+..+..+|++.+|...+++|..+-| ...
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~--~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDH--AGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhh--ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 4788999999999999999998888865422110 00 011234778888889999999999999999987611 111
Q ss_pred -CchhHHHHH----HhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 217 -HPRIMGIIR----ECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 217 -~~~~~~~~~----~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
+|.. +..+ .-.|..+...|+|.+|..+|-.+.+-
T Consensus 93 ~~pd~-~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 93 LNQDE-GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TTSTH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCch-HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3321 2233 45688888999999999999999764
No 183
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.45 E-value=0.1 Score=39.84 Aligned_cols=64 Identities=11% Similarity=0.192 Sum_probs=50.3
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~ 214 (430)
...+|.++...|+|++|.+.+++....-.+ ....+...+.++...|++.+|...++++..+...
T Consensus 10 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 10 RYALAQEHLKHDNASRALALFEELVETDPD------------YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 458899999999999999999998877321 2346667778899999999999999988765443
No 184
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.34 E-value=0.1 Score=40.55 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
.+++++|++.|++.++.+++. ..++..++.+|...|+++++.+.+...+...
T Consensus 32 ~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 32 HEQFDAALPHLRAALDFDPTY----SVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 467899999999999887654 4567889999999999999999999988875
No 185
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.27 E-value=0.033 Score=52.04 Aligned_cols=97 Identities=13% Similarity=0.117 Sum_probs=72.0
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014143 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (430)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~ 216 (430)
.+.+.+|.++.+.|+|++|.+.+..+...- . + .+ .....+.+++..++++.|..+++.+. ..+
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-----p-~------~~-~~~~~a~l~~~~~r~~dA~~~l~~a~----~~~ 165 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAG-----S-E------HL-VAWMKAVVYGAAERWTDVIDQVKSAG----KWP 165 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-----C-H------HH-HHHHHHHHHHHTTCHHHHHHHHTTGG----GCS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----C-c------hH-HHHHHHHHHHHcCCHHHHHHHHHHhh----ccC
Confidence 345578888999999999999888776531 1 1 22 44455668999999999999887442 233
Q ss_pred CchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 217 ~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
+|.....++.+.|..+...|++.+|..+|-++..
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND 199 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 5554556777789999999999999999998864
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=95.26 E-value=0.14 Score=51.18 Aligned_cols=108 Identities=17% Similarity=0.164 Sum_probs=79.8
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcc---hhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014143 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDD---QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (430)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d---~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~ 214 (430)
....+|..++..|+|++|...+.+........+...+ ..........+...+.++..++++.+|...++++..+..
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p- 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS- 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-
Confidence 3558899999999999999999998887543210000 000123467788888999999999999999999987532
Q ss_pred CCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 215 ~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
. ....+...|.++...++|.+|..+|..+.+.
T Consensus 349 ----~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 349 ----A-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp ----T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ----c-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2 1233445588999999999999999999763
No 187
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=95.09 E-value=0.75 Score=42.36 Aligned_cols=132 Identities=11% Similarity=0.040 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 014143 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (430)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~k 133 (430)
...+..++..+...|+++++.+.|+..+..- |+ +.
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----------------------P~-~~--------------------- 151 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-----------------------NQ-NG--------------------- 151 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----------------------TS-CH---------------------
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-----------------------Cc-ch---------------------
Confidence 3566788999999999999999998887753 33 00
Q ss_pred hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 014143 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (430)
Q Consensus 134 l~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~ 213 (430)
.....||.++...|++++|...++.+...-. + .. ...+.....+...++...|...++++....
T Consensus 152 ---~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p------~----~~--~~~~~~~~~l~~~~~~~~a~~~l~~al~~~- 215 (287)
T 3qou_A 152 ---EIGLLLAETLIALNRSEDAEAVLXTIPLQDQ------D----TR--YQGLVAQIELLXQAADTPEIQQLQQQVAEN- 215 (287)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC------S----HH--HHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-
T ss_pred ---hHHHHHHHHHHHCCCHHHHHHHHHhCchhhc------c----hH--HHHHHHHHHHHhhcccCccHHHHHHHHhcC-
Confidence 1234788899999999999998887755521 1 11 112222223445566777777777765432
Q ss_pred cCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 214 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 214 ~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
|.- ...+...|.++...|+|.+|...|..+...
T Consensus 216 ----P~~-~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 216 ----PED-AALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp ----TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----Ccc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 221 123344477888889999999999888764
No 188
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=95.08 E-value=0.8 Score=46.06 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=11.9
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHh
Q 014143 141 KLCKIWFDMGEYGRMSKILKELHK 164 (430)
Q Consensus 141 ~La~~~~~~g~~~~A~~~l~el~~ 164 (430)
.+|.++...|++++|..++.....
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~ 349 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLA 349 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhC
Confidence 344444445555555555554444
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=95.06 E-value=0.11 Score=40.73 Aligned_cols=89 Identities=8% Similarity=0.035 Sum_probs=65.1
Q ss_pred hccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhh
Q 014143 149 MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECG 228 (430)
Q Consensus 149 ~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~ 228 (430)
.|++++|...+++...... ++ ......+...+.++...|++.+|...++++....+ .. ...+...
T Consensus 3 ~g~~~~A~~~~~~al~~~~-----~~----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----~~-~~~~~~l 67 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGL-----QG----KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-----NH-QALRVFY 67 (117)
T ss_dssp ----CCCHHHHHHHHSSCC-----CH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-HHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCC-----CC----ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----Cc-hHHHHHH
Confidence 5888999999988877521 12 23467778888999999999999999999876532 21 2344556
Q ss_pred hHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 229 GKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 229 g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
|.++...|+|.+|...|..+....
T Consensus 68 ~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 68 AMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888999999999999999997653
No 190
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=95.00 E-value=0.18 Score=47.66 Aligned_cols=103 Identities=9% Similarity=0.017 Sum_probs=74.3
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCch
Q 014143 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (430)
Q Consensus 140 ~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~ 219 (430)
.-+|.++...|++++|++++.+....- + ....++.++..+++++..|+...|+..+++............
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~-------~---~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~ 173 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDND-------E---AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGD 173 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSS-------C---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccC-------C---CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccc
Confidence 488999999999999999999874431 1 024678999999999999999999999987754421000001
Q ss_pred hHHHHHHhhhHhhhhhh--cHHHHHHHHHHHHHhh
Q 014143 220 IMGIIRECGGKMHMAER--QWADAATDFFEAFKNY 252 (430)
Q Consensus 220 ~~~~~~~~~g~~~~~~~--~y~~A~~~f~ea~~~~ 252 (430)
-...+.+..|.+.+..| +|.+|+..|-+..+.|
T Consensus 174 d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~ 208 (310)
T 3mv2_B 174 NEMILNLAESYIKFATNKETATSNFYYYEELSQTF 208 (310)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC
Confidence 22345566676666555 8999999998886665
No 191
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.90 E-value=0.33 Score=44.74 Aligned_cols=100 Identities=13% Similarity=0.009 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 014143 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (430)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~k 133 (430)
..++..++..++..|+++++.+.|...+... |+ +.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----------------------p~-~~--------------------- 38 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-----------------------PL-VA--------------------- 38 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------SC-CH---------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------Cc-cH---------------------
Confidence 4678889999999999999999998887753 32 00
Q ss_pred hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 014143 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (430)
Q Consensus 134 l~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~ 213 (430)
.....+|.+|...|++++|...+.+....-. .....+...+.++...|++.+|...++++.....
T Consensus 39 ---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 39 ---VYYTNRALCYLKMQQPEQALADCRRALELDG------------QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 0133677888888888888888877766521 1234555667778888888888888888765543
No 192
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=94.36 E-value=2.1 Score=37.24 Aligned_cols=151 Identities=12% Similarity=0.024 Sum_probs=96.1
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLG----KYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~----~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~ 104 (430)
..|+++|++.|++..+.. ...++..++.+|.. + +++++.++|.+.... . .......+-..+
T Consensus 31 ~~~~~~A~~~~~~a~~~g------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~---g-----~~~a~~~Lg~~y 95 (212)
T 3rjv_A 31 SGDYQKAEYWAQKAAAQG------DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA---G-----SKSGEIVLARVL 95 (212)
T ss_dssp HTCHHHHHHHHHHHHHTT------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT---T-----CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC---C-----CHHHHHHHHHHH
Confidence 468999999999997653 25788899999998 7 999999999988542 1 122334444444
Q ss_pred cCCC--CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHH----hccHHHHHHHHHHHHhhccCCCCCcchhhc
Q 014143 105 SGSA--SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (430)
Q Consensus 105 ~~~~--~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~----~g~~~~A~~~l~el~~~~~~~~~~~d~~~~ 178 (430)
.... ..+.+....+++.+.+. .+..-.......||.+|.. .+++++|..+++..-.. . +. .
T Consensus 96 ~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~---~~-~---- 162 (212)
T 3rjv_A 96 VNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-S---RT-G---- 162 (212)
T ss_dssp TCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-S---CT-T----
T ss_pred HcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-C---CC-H----
Confidence 3310 11243344444444221 1110124556799999999 88999999999988665 1 11 1
Q ss_pred chHHHHHHHHHHHHHh------hcCHHHHHHHHHHHHhh
Q 014143 179 SQLLEVYAIEIQMYTE------TKNNKKLKQLYQKALAI 211 (430)
Q Consensus 179 ~~~~e~~l~~~~l~~~------~~d~~ka~~~l~~a~~~ 211 (430)
..+.....+|.. .+|+.+|..++++|...
T Consensus 163 ----~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 163 ----YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp ----HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 122333445543 23899999999988543
No 193
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.31 E-value=2.9 Score=47.40 Aligned_cols=160 Identities=11% Similarity=0.173 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh-------hhhhhHHHHHHHHHH
Q 014143 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA-------VTRNYSEKCINNIMD 102 (430)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~-------~~k~~~~k~v~~il~ 102 (430)
+++++|++.|.+. ++ ...+..++..|.+.|+|++++++|..-++..+.. ..-++.. -+..+-+
T Consensus 1119 G~~kEAIdsYiKA-----dD----~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~-rleele~ 1188 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA-----DD----PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN-RLAELEE 1188 (1630)
T ss_pred CCHHHHHHHHHhc-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhc-CHHHHHH
Confidence 4577888887553 11 4566778999999999999999998766543110 0001111 1122223
Q ss_pred HhcCCCCCChhHHHHHHHHHHHHHHHh----hhhhhHH--HHhHHHHHHHHHhccHHHHHHHHHHHHhh---------cc
Q 014143 103 FVSGSASQNFSLLREFYQTTLKALEEA----KNERLWF--KTNLKLCKIWFDMGEYGRMSKILKELHKS---------CQ 167 (430)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~e~l~~~----~~~kl~~--r~~~~La~~~~~~g~~~~A~~~l~el~~~---------~~ 167 (430)
++.. ++ . ..+..+. +.+... .....|- ....++|..+...|+|++|.+...+.... |.
T Consensus 1189 fI~~-~n--~---ad~~~iG-d~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1189 FING-PN--N---AHIQQVG-DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACV 1261 (1630)
T ss_pred HHhC-CC--H---HHHHHHH-HHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3322 22 2 1222221 111110 0111222 23458899999999999998877665322 10
Q ss_pred CCCCCcchhhc----c----hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014143 168 REDGTDDQKKG----S----QLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (430)
Q Consensus 168 ~~~~~~d~~~~----~----~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~ 210 (430)
+. .+ .+. . ..-+.+-..+++|...|.+..|-.+++.+..
T Consensus 1262 e~---~E-f~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1262 DG---KE-FRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred hh---hH-HHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 00 00 000 0 0122333556788899999999999988854
No 194
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.23 E-value=0.36 Score=35.97 Aligned_cols=61 Identities=20% Similarity=0.222 Sum_probs=49.6
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHH-HHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE-VYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 140 ~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e-~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
+.+|..+...|+|++|.+.+++...... + ... .+...+.++...|++.+|...++++....
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p-----~-------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEP-----V-------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS-----S-------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-----C-------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4788899999999999999999887732 1 134 66777888999999999999999987653
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=94.21 E-value=0.41 Score=36.91 Aligned_cols=63 Identities=10% Similarity=0.066 Sum_probs=48.3
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
....+|.++...|++++|.+.+.+...... .....+...+.++...|++.+|...++++....
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDFDP------------TYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCC------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 345788899999999999999988877632 123455666788888999999999998886554
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=94.02 E-value=0.1 Score=39.65 Aligned_cols=53 Identities=13% Similarity=0.284 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
..+++++|++.|.+.++.+|++ ..++..++.++...|+++++++.+...+...
T Consensus 16 ~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 16 KQGLYREAVHCYDQLITAQPQN----PVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3568999999999999987754 4678899999999999999999998887653
No 197
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=93.93 E-value=0.14 Score=46.02 Aligned_cols=94 Identities=12% Similarity=0.077 Sum_probs=70.6
Q ss_pred CCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhC-CCh
Q 014143 291 NDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELN-VPE 369 (430)
Q Consensus 291 ~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~-l~~ 369 (430)
.+|.+..+..|.+...++++.+|-+.++. ++-+...+..|.+.+|......+...|++|+++.+++.|| ++.
T Consensus 95 ~~~~I~~i~~L~~~L~~~~y~~fW~~l~~-------~~~l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~ 167 (226)
T 1rz4_A 95 EERPIRQILYLGDLLETCHFQAFWQALDE-------NMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSD 167 (226)
T ss_dssp TSTTHHHHHHHHHHHHTTCHHHHHHHSCT-------TCHHHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCH
T ss_pred cCHHHHHHHHHHHHHHcCCHHHHHHHHhc-------ChhHHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCH
Confidence 46788888899999999999988765543 3444444556778888877788889999999999999995 899
Q ss_pred HHHHHHHHHhhhcCceeEeeeccCCEEEE
Q 014143 370 KDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (430)
Q Consensus 370 ~evE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (430)
++++.++.+- | =++| .+|.|.+
T Consensus 168 ~el~~fi~~~---G---W~vd-~~g~I~~ 189 (226)
T 1rz4_A 168 SQLKVWMSKY---G---WSAD-ESGQIFI 189 (226)
T ss_dssp HHHHHHHHHH---T---CEEC-C--CEEC
T ss_pred HHHHHHHHHC---C---CEEC-CCccEEe
Confidence 9999998872 2 1454 5566655
No 198
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.75 E-value=0.38 Score=37.07 Aligned_cols=69 Identities=12% Similarity=0.092 Sum_probs=54.3
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
...||..+++.|+|..|...++.........+.. .....+++...+..+..+|++.+|..+++++.+..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~-----~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEIS-----TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC-----SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCC-----cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4689999999999999999999887765332110 12356777778889999999999999999987653
No 199
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.57 E-value=0.29 Score=47.90 Aligned_cols=135 Identities=8% Similarity=0.108 Sum_probs=91.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhh---------
Q 014143 60 TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK--------- 130 (430)
Q Consensus 60 l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~--------- 130 (430)
+.+++...+..+.++++|..|+..|+..+++-+..+++..+.+...+ .+...++++.+...+....
T Consensus 45 L~~~~~~~~~~~~~~~ly~~fi~~f~~kin~L~lv~~~~~~~~~~~d-----~~~al~~L~~~~~~~~~~~~~~~~~~~~ 119 (393)
T 4b4t_O 45 LTKFFDDAKSTPLRLRLYDNFVSKFYDKINQLSVVKYLLASLKDSKD-----FDESLKYLDDLKAQFQELDSKKQRNNGS 119 (393)
T ss_dssp THHHHCCCSSCCCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHTTC-----HHHHHHHHHHHTTTSHHHHSSCCCCCCS
T ss_pred HHHHHhChhcchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC-----HHHHHHHHHHHHHHHhhhhhhhhcccch
Confidence 44555555566677899999999998888998888887666665532 3334455544433332210
Q ss_pred --hhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHH
Q 014143 131 --NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQ 203 (430)
Q Consensus 131 --~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~ 203 (430)
...-.+.+...++.+|+..|+.++|.+++.++.......++. + ......+|-..+.+|...+++..+..
T Consensus 120 ~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~-~---~~v~~~~y~~~~~~~~~~~~~a~~y~ 190 (393)
T 4b4t_O 120 KDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI-P---LRITNSFYSTNSQYFKFKNDFNSFYY 190 (393)
T ss_dssp SSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS-S---SHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc-c---HHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 001133455589999999999999999999999877655443 2 25667788888888888888877443
No 200
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=93.56 E-value=0.14 Score=51.41 Aligned_cols=94 Identities=13% Similarity=0.029 Sum_probs=74.3
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCch
Q 014143 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (430)
Q Consensus 140 ~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~ 219 (430)
..+|..+...|+|++|.+.+++...... .....+...+.++..+|++.+|..+++++.... |.
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-----p~ 72 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNP------------SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-----KK 72 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-----TT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CC
Confidence 3677888899999999999999888732 124667777889999999999999999997652 22
Q ss_pred hHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 220 IMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 220 ~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
. +..+...|.++...++|.+|..+|.++.+.
T Consensus 73 ~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 73 Y-IKGYYRRAASNMALGKFRAALRDYETVVKV 103 (477)
T ss_dssp C-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1 223445588899999999999999999774
No 201
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=93.36 E-value=1.9 Score=35.94 Aligned_cols=164 Identities=12% Similarity=0.083 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhH
Q 014143 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLW 135 (430)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~ 135 (430)
.+...+..+...|+++++...|+..+..- +.... ....+...+....+ .+.....++.+++ ...+ ..+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~-----a~~~la~~~~~~g~--~~~A~~~~~~a~~---~~p~-~~~ 75 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGD-----VKLAKADCLLETKQ--FELAQELLATIPL---EYQD-NSY 75 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHH-----HHHHHHHHHHHTTC--HHHHHHHHTTCCG---GGCC-HHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHH-----HHHHHHHHHHHCCC--HHHHHHHHHHhhh---ccCC-hHH
Confidence 35567889999999999999999887764 43211 11111111111011 1112222221111 0000 011
Q ss_pred HHHhHHHHHHHH-HhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014143 136 FKTNLKLCKIWF-DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (430)
Q Consensus 136 ~r~~~~La~~~~-~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~ 214 (430)
...++.+.. ..++..+|...+++....-+ ...+.+...+.++...|++.+|...++++......
T Consensus 76 ---~~~~~~~~~~~~~~~~~a~~~~~~al~~~P------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 76 ---KSLIAKLELHQQAAESPELKRLEQELAANP------------DNFELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp ---HHHHHHHHHHHHHTSCHHHHHHHHHHHHST------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred ---HHHHHHHHHHhhcccchHHHHHHHHHHhCC------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 111222211 22233345556655555421 12345556667777888888888888777654321
Q ss_pred CCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 215 ~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
..++ ..+...|.++...|++.+|...|..++.
T Consensus 141 ~~~~----~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 141 AQDG----EVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TTTT----HHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred cChH----HHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 1111 1223335666667777777777766643
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=93.35 E-value=0.24 Score=35.97 Aligned_cols=52 Identities=21% Similarity=0.451 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
.+++++|++.|.+.++..+++ ..++..++.++...|+++++.+++...+...
T Consensus 22 ~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 22 QGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 467999999999999887654 4677889999999999999999999888764
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=93.28 E-value=0.52 Score=34.08 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=49.3
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
....+|..+...|++++|.+.+.+....... ....+...+.++...|++.+|..+++++...
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3457899999999999999999988876321 1345666778889999999999999988765
No 204
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=93.24 E-value=2.8 Score=42.22 Aligned_cols=173 Identities=12% Similarity=0.062 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhh
Q 014143 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (430)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl 134 (430)
-.+..++..|.+.|+.+++++++..+... + +.+ .....+.++..+..............++.+.+.++......+
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~--G-v~p--d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~ 101 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRN--G-VQL--SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV 101 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHH--T-CCC--CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc--C-CCC--CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCC
Confidence 35677889999999999999999998764 2 322 233456677766542110000000111222222221111111
Q ss_pred --HHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 135 --WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 135 --~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
-..+..-|...+...|++++|.+++.++...-..+ + +..|-..+..|...|++.+|..+++.-...
T Consensus 102 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P----d-------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~- 169 (501)
T 4g26_A 102 VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP----R-------LRSYGPALFGFCRKGDADKAYEVDAHMVES- 169 (501)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----c-------cceehHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 11234467888999999999999999998763221 1 345556667888999999999998875432
Q ss_pred ccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHH
Q 014143 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (430)
Q Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea 248 (430)
.-.++... +......+...|++.+|...|.+-
T Consensus 170 G~~Pd~~t----y~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 170 EVVPEEPE----LAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp TCCCCHHH----HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCHHH----HHHHHHHHhhCCCHHHHHHHHHHH
Confidence 11223221 111223355788899998887775
No 205
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=92.99 E-value=7 Score=38.39 Aligned_cols=174 Identities=8% Similarity=0.088 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCC
Q 014143 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLG---KYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (430)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~---~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (430)
+.++|...++.....++ .+...++.+|.+.| ++++++++|+.....- +. . +.....+...+...
T Consensus 160 ~~~~a~~~~~~a~~~~~-------~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~--~---a~~~~~Lg~~y~~g 226 (452)
T 3e4b_A 160 HLDDVERICKAALNTTD-------ICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TV--T---AQRVDSVARVLGDA 226 (452)
T ss_dssp GHHHHHHHHHHHTTTCT-------THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CS--C---HHHHHHHHHHHTCG
T ss_pred CHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CH--H---HHHHHHHHHHHhCC
Confidence 34445555555433221 27788999999999 8888888888776642 11 1 11112233333321
Q ss_pred --CCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHH-H--HHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHH
Q 014143 108 --ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKI-W--FDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL 182 (430)
Q Consensus 108 --~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~-~--~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~ 182 (430)
...+.+....+++.+. .-.......||.+ + ...|++++|.+++++.-.. | + .
T Consensus 227 ~~~~~d~~~A~~~~~~aa---------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-----g--~-------~ 283 (452)
T 3e4b_A 227 TLGTPDEKTAQALLEKIA---------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-----D--Q-------P 283 (452)
T ss_dssp GGSSCCHHHHHHHHHHHG---------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-----T--C-------H
T ss_pred CCCCCCHHHHHHHHHHHc---------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-----C--C-------H
Confidence 1122334444444432 1112334588888 4 4678999999999887644 1 1 1
Q ss_pred HHHHHHHHHHHhhc-----CHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhh----hhcHHHHHHHHHHHHH
Q 014143 183 EVYAIEIQMYTETK-----NNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA----ERQWADAATDFFEAFK 250 (430)
Q Consensus 183 e~~l~~~~l~~~~~-----d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~y~~A~~~f~ea~~ 250 (430)
+.+.....+|. .| |+.+|..++++|. -.+|. +.+. .|.++.. .+|+.+|..+|..+.+
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~--A~~~--Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVA--ADYY--LGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHH--HHHH--HHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHH--HHHH--HHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 22333344554 44 9999999998764 11232 2222 2444443 5699999999998865
No 206
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=92.95 E-value=0.27 Score=46.74 Aligned_cols=106 Identities=11% Similarity=-0.091 Sum_probs=75.0
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCC-----CCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQRED-----GTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~-----~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~ 213 (430)
...+|..++..|+|++|...+.+......... +..+..........+...+.++..++++.+|..+++++....
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 260 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE- 260 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 45889999999999999999998777643100 000000001122477778889999999999999999987653
Q ss_pred cCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 214 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 214 ~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
|. ....+...|..+...++|.+|..+|..+.+
T Consensus 261 ----p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 261 ----EK-NPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp ----TT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred ----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 123345558889999999999999998865
No 207
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.61 E-value=0.15 Score=39.46 Aligned_cols=72 Identities=13% Similarity=0.020 Sum_probs=55.7
Q ss_pred chhhHHHHHHhhcccCC-CCHHHHHHHHHHhhcCCcc---chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 13 FTVSRVLCSILEKGLVE-TDPEGALAGFAEVVAMEPE---KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 13 ~~~~~~~~~~~ak~~~~-~~~~~Ai~~~~~ii~~~~~---~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
|.++...|+.-|+...+ +++..|+.-|+..++..++ .+.....++.+++..|++.|+++.++.++...+..-
T Consensus 1 ~~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 1 MFLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 34566777777776644 5799999999999875321 122346889999999999999999999999998864
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.60 E-value=0.3 Score=37.11 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
.++|...|++.++.+|+. .+++..+|.++++.|+|++++++++.++..-
T Consensus 25 ~~~A~~~l~~AL~~dp~~----~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYN----EAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 689999999999998764 7899999999999999999999999998754
No 209
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=92.54 E-value=8.2 Score=37.52 Aligned_cols=131 Identities=11% Similarity=0.075 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHhhcCCc-cchhhhHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC
Q 014143 30 TDPEGALAGFAEVVAMEP-EKAEWGFK--ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (430)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~-~~~~~~~k--~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (430)
+..+.-++...+.++-.. ++..| .| .=.+++.+|.+.|+|.++++.+..++...+..-.+....++.---+..+..
T Consensus 73 ~~~~~~~~~~~~~~~~a~~~~r~f-lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~ 151 (394)
T 3txn_A 73 AGTGIEVQLCKDCIEWAKQEKRTF-LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA 151 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Confidence 344555666666554322 23444 33 224789999999999999999999999873322355555555555555544
Q ss_pred CCCCChhHHHHHHHHHHHHHHHh-hhhhhHHHHhHHHHHHHH-HhccHHHHHHHHHHHH
Q 014143 107 SASQNFSLLREFYQTTLKALEEA-KNERLWFKTNLKLCKIWF-DMGEYGRMSKILKELH 163 (430)
Q Consensus 107 ~~~~~~~~~~~~~~~~~e~l~~~-~~~kl~~r~~~~La~~~~-~~g~~~~A~~~l~el~ 163 (430)
.. |.......+..++...... +..++--++..--|.++. ..++|.+|...+-+.-
T Consensus 152 ~~--n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 152 LS--NLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp TT--CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred hc--cHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 33 3667777888887665443 444555566667888899 8999999987766654
No 210
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.97 E-value=8.5 Score=36.46 Aligned_cols=48 Identities=10% Similarity=0.105 Sum_probs=38.6
Q ss_pred CCCCcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCCh-hHHHHHHH
Q 014143 289 YKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDP-FIRNYIED 336 (430)
Q Consensus 289 ~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~-~l~~~~~~ 336 (430)
|...|.+..+.-|+.+...+....|..+.+.|+..+..|| .+.+.++.
T Consensus 239 ~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~ 287 (336)
T 3lpz_A 239 FPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTALEL 287 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHH
T ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 4345777888889999999999999999999999999998 65544433
No 211
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=91.96 E-value=6.7 Score=38.52 Aligned_cols=92 Identities=7% Similarity=0.005 Sum_probs=59.6
Q ss_pred HhHHHHHHHHHhc---cHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhh----cCHHHHHHHHHHHHh
Q 014143 138 TNLKLCKIWFDMG---EYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET----KNNKKLKQLYQKALA 210 (430)
Q Consensus 138 ~~~~La~~~~~~g---~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~----~d~~ka~~~l~~a~~ 210 (430)
....||.+|...| ++.+|.+.+...-..-. .+ ...+.....+|... +|+.+|..+++++.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-----~~-------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa- 244 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-----VT-------AQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-----SC-------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-----HH-------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-
Confidence 4568999999999 89999998888766521 11 12222333445443 79999999998875
Q ss_pred hhccCCCchhHHHHHHhhhHh-h--hhhhcHHHHHHHHHHHHH
Q 014143 211 IKSAIPHPRIMGIIRECGGKM-H--MAERQWADAATDFFEAFK 250 (430)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~g~~-~--~~~~~y~~A~~~f~ea~~ 250 (430)
. .+|..+ +. .|.+ + ...+|+.+|..+|..+.+
T Consensus 245 --~--g~~~a~--~~--Lg~~~~~~~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 245 --P--GYPASW--VS--LAQLLYDFPELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp --G--GSTHHH--HH--HHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred --C--CCHHHH--HH--HHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 1 122222 11 1333 2 358899999999998864
No 212
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=91.76 E-value=0.45 Score=34.92 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=40.0
Q ss_pred HHHHHhccccc---ccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeecc
Q 014143 344 QVLLKLIKPYT---RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV 392 (430)
Q Consensus 344 ~~l~~i~~~Y~---~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~ 392 (430)
+.|+.+++.-. +++..+||+.+|++...|...|-+|..+|.|.+.-+.+
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~ 68 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTP 68 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSS
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 34445555444 89999999999999999999999999999998765444
No 213
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=90.51 E-value=1.8 Score=32.98 Aligned_cols=72 Identities=13% Similarity=0.196 Sum_probs=49.6
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeec--cCCEEEEccCCccchHHHHHHHHHHHHHHHHHHHhhhc
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ--VNRLLERGDRSKGMKKYTAIDKWNSQLRSLYQTVSNRV 429 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq--~~g~v~~~~~~~~~~~~~~l~~w~~~v~~l~~~v~~~~ 429 (430)
...++..+||+.+|++..-|-..|.+|...|.|...-|. ..+.+..+... .+.+..+...+..+...+.+++
T Consensus 32 ~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~g-----~~~~~~~~~~~~~~~~~~~~~l 105 (109)
T 1sfx_A 32 RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKP-----EKVLKEFKSSILGEIERIEKMF 105 (109)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCH-----HHHHHHHHHHHHHHHHHHHTTS
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEecCcH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 456999999999999999999999999999999876654 33334443321 2344444555555555555443
No 214
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.97 E-value=6.9 Score=38.41 Aligned_cols=108 Identities=9% Similarity=0.024 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 014143 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (430)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~k 133 (430)
.++...++++|.+.|+++++.+.|..+.... .. ++.+++ ++-.++...-...+ .......++.+...+...++..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~-~~-~~~kid-~~l~~irl~l~~~d--~~~~~~~~~ka~~~~~~~~d~~ 205 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKA-IS-TGAKID-VMLTIARLGFFYND--QLYVKEKLEAVNSMIEKGGDWE 205 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHH-TC-CCSHHH-HHHHHHHHHHHHTC--HHHHHHHHHHHHHHHTTCCCTH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CC-hHHHHH-HHHHHHHHHHHhcc--HHHHHHHHHHHHHhhhcCCCHH
Confidence 6788999999999999999999999998875 22 344443 33333333221123 5566777777766555433333
Q ss_pred hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014143 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (430)
Q Consensus 134 l~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~ 166 (430)
+..++..--|.++...++|.+|.+.+-++-...
T Consensus 206 ~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 206 RRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 333444456667778899999998887775543
No 215
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=89.92 E-value=0.41 Score=35.24 Aligned_cols=43 Identities=21% Similarity=0.222 Sum_probs=38.5
Q ss_pred HHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcee
Q 014143 344 QVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 344 ~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
..|+.+++...++++++||+.|++|+.-|...|..+...|.+.
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3456777778999999999999999999999999999999873
No 216
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=89.64 E-value=9 Score=38.42 Aligned_cols=156 Identities=11% Similarity=0.023 Sum_probs=96.8
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCC---------HHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGK---------YKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~---------~~~l~e~~~~l~~~~~~~~~k~~~~k~v~ 98 (430)
+.+++++|++.|.+..+..-.- ....+..++..|...+. .+.+.+.+..+... .+.+ .....+
T Consensus 38 k~G~~~~A~~lf~~M~~~Gv~p---d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~---G~~P--d~~tyn 109 (501)
T 4g26_A 38 KKGDVLEALRLYDEARRNGVQL---SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD---KVVP--NEATFT 109 (501)
T ss_dssp TSCCHHHHHHHHHHHHHHTCCC---CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT---TCCC--CHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCC---CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh---CCCC--CHHHHH
Confidence 4568999999999986643211 13456667777876554 56777777776542 2222 223456
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhc
Q 014143 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (430)
Q Consensus 99 ~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~ 178 (430)
.++..+..... .+....+++...+ . + -.--..+..-+...|...|++++|.+++.++...-..+ +
T Consensus 110 ~lI~~~~~~g~--~~~A~~l~~~M~~---~-g-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P----d---- 174 (501)
T 4g26_A 110 NGARLAVAKDD--PEMAFDMVKQMKA---F-G-IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP----E---- 174 (501)
T ss_dssp HHHHHHHHHTC--HHHHHHHHHHHHH---T-T-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC----C----
T ss_pred HHHHHHHhcCC--HHHHHHHHHHHHH---c-C-CCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----C----
Confidence 66666654222 3233333322211 0 0 00112334467788899999999999999998763222 1
Q ss_pred chHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014143 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (430)
Q Consensus 179 ~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~ 209 (430)
...|...+..|...|+..+|..++++-+
T Consensus 175 ---~~ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 175 ---EPELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 2455666788999999999999998764
No 217
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=89.58 E-value=0.48 Score=35.15 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=41.2
Q ss_pred HHHHhccccc---ccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 345 VLLKLIKPYT---RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 345 ~l~~i~~~Y~---~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
.|+.+++... +++..+||+.||++...|...|.+|-.+|.|.-. +...|.=.+..+
T Consensus 14 ~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~-g~~~~~W~i~~~ 72 (81)
T 1qbj_A 14 RILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE-AGTPPLWKIAVS 72 (81)
T ss_dssp HHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-SSSSCEEEEC--
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec-CCCCCeeEEeCc
Confidence 3445555545 9999999999999999999999999999999543 233355555443
No 218
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=89.07 E-value=0.57 Score=35.25 Aligned_cols=44 Identities=11% Similarity=0.173 Sum_probs=39.4
Q ss_pred HHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEe
Q 014143 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (430)
Q Consensus 345 ~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~ 388 (430)
.|+.+++-..++++++||+.|++|+.-|...|..+...|.|.=.
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45677777899999999999999999999999999999988654
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=88.63 E-value=0.85 Score=38.18 Aligned_cols=51 Identities=18% Similarity=0.138 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHhhcCC-ccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 31 DPEGALAGFAEVVAME-PEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 31 ~~~~Ai~~~~~ii~~~-~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
+.++++..|+++++.+ |+ -...++..++-.|++.|+|+++.+++..++..-
T Consensus 50 ~~~~gI~lLe~ll~~~~p~---~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 50 DIRKGIVLLEELLPKGSKE---EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHHHHHHSCHH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCcc---chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3569999999999876 32 246789999999999999999999999999863
No 220
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=87.72 E-value=3.3 Score=31.01 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=49.1
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC---EEEEccCCccchHHHHHHHHHHHHHHHHHHH
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDRSKGMKKYTAIDKWNSQLRSLYQTV 425 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g---~v~~~~~~~~~~~~~~l~~w~~~v~~l~~~v 425 (430)
...+++.+||+.+|++..-+-..|.+|...|.|...-+..+| .+.+++. -.+.+..|...+..+...+
T Consensus 28 ~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~-----g~~~~~~~~~~~~~~~~~~ 98 (100)
T 1ub9_A 28 RRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDF-----GMEEAKRFLSSLKAVIDGL 98 (100)
T ss_dssp HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHH-----HHHHHHHHHHHHHHHHHhc
Confidence 356899999999999999999999999999999876643333 3333322 2355666666666665543
No 221
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=87.02 E-value=0.84 Score=38.50 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHH
Q 014143 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLG-----------KYKEMMDAYREMLTY 83 (430)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~-----------~~~~l~e~~~~l~~~ 83 (430)
+++|+..|++.++.+|+. ..++..+|.+|.+.| ++++++++|++-+..
T Consensus 62 ~~eAi~~le~AL~ldP~~----~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKK----DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 689999999999998864 567889999999875 788888877777775
No 222
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=86.63 E-value=0.9 Score=33.31 Aligned_cols=33 Identities=12% Similarity=0.062 Sum_probs=30.9
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCcee
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
-.+++.+||+.+|++..-|...|..|-..|.|.
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 569999999999999999999999999999984
No 223
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=86.49 E-value=9.5 Score=35.20 Aligned_cols=100 Identities=7% Similarity=-0.152 Sum_probs=74.7
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014143 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (430)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~ 217 (430)
....+|.++.+.|+|++|...+....... ++ ...-.++......+..+|++.+|...|+++.. -+.
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-------d~---~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~----g~~ 202 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP-------DK---FLAGAAGVAHGVAAANLALFTEAERRLTEAND----SPA 202 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-------CH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----STT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccC-------Cc---ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc----CCC
Confidence 44678889999999999999997443321 21 22245666777889999999999999998752 122
Q ss_pred -chhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 218 -PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 218 -~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
|..........|..+...|+..+|...|-++...
T Consensus 203 ~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 203 GEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5444445567799999999999999999998764
No 224
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=86.46 E-value=1 Score=31.84 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=31.5
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeE
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g 387 (430)
..++..+||+.+|+|...|.+.|..|..+|.|..
T Consensus 24 ~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 24 GPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp SCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 5699999999999999999999999999999754
No 225
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.38 E-value=8.6 Score=37.95 Aligned_cols=111 Identities=20% Similarity=0.162 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHh-hh
Q 014143 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA-KN 131 (430)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~-~~ 131 (430)
..|....++++|.+.|++.++.+.+..+..-..+...+..-.+.+-..+..+-...+ .......+..+....... ..
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d--~~~a~~~~~ki~~~~~~~~~~ 213 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGD--YSQATVLSRKILKKTFKNPKY 213 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhhcccCCc
Confidence 457778899999999999999999999876553444555544454444444433233 444555555554433322 23
Q ss_pred hhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014143 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (430)
Q Consensus 132 ~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~ 165 (430)
..+-++...-.|.++...++|.+|.+.+.++-..
T Consensus 214 ~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 214 ESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3454555667889999999999999888777653
No 226
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=86.14 E-value=1.4 Score=36.10 Aligned_cols=61 Identities=8% Similarity=-0.030 Sum_probs=50.0
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeE--eeeccCCEEEEccCCccchHHHHHHHHHH
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG--HIDQVNRLLERGDRSKGMKKYTAIDKWNS 416 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g--~IDq~~g~v~~~~~~~~~~~~~~l~~w~~ 416 (430)
..-.+.+.||+.+|+++.+|...|.+|+..|.|.= +.|..++.....+-.+ ++++|..+-.
T Consensus 49 ~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~p---L~ekL~~~~~ 111 (135)
T 2v79_A 49 SYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQP---LWGKLYEYIQ 111 (135)
T ss_dssp CCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHH---HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHH---HHHHHHHHHH
Confidence 45688999999999999999999999999999864 6677777777777654 6888877543
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.82 E-value=10 Score=31.97 Aligned_cols=69 Identities=13% Similarity=0.036 Sum_probs=47.6
Q ss_pred HHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014143 143 CKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (430)
Q Consensus 143 a~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~ 214 (430)
.+-.++.|.|+.|.-+..-+.......+.... ...+.+++..-+..++..++|.+|...|++|......
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~s---p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~ 95 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFS---PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA 95 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCccccc---HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 45566778898887666555555432221111 2567788888889999999999999999998554443
No 228
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=85.19 E-value=2.3 Score=42.18 Aligned_cols=174 Identities=10% Similarity=0.083 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHH--h--hh
Q 014143 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE--A--KN 131 (430)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~--~--~~ 131 (430)
++..+|..|++.|+|+++..+|.+...+. ....--.-..-.+..++.+.+..+ .+.-..+...|.+.=++ + ..
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~-~LA~~L~~Lg~yq~AVea~~KA~~--~~~Wk~v~~aCv~~~ef~lA~~~~ 200 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNVSNFG-RLASTLVHLGEYQAAVDGARKANS--TRTWKEVCFACVDGKEFRLAQMCG 200 (449)
T ss_dssp -------------CTTTHHHHHHHTTCHH-HHHHHHHTTTCHHHHHHHHHHHTC--HHHHHHHHHHHHHTTCHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhHH-HHHHHHHHhccHHHHHHHHHHcCC--chhHHHHHHHHHHcCcHHHHHHHH
Confidence 67888999999999999999998764432 111000000001112222222111 22223333333331001 0 00
Q ss_pred hhhHH--HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014143 132 ERLWF--KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (430)
Q Consensus 132 ~kl~~--r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~ 209 (430)
..+.. .-...++.+|.+.|.+++|..++...... | ..++.++-....+|.+- ...++.+.++
T Consensus 201 l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l--------e----~ah~~~ftel~il~~ky-~p~k~~ehl~--- 264 (449)
T 1b89_A 201 LHIVVHADELEELINYYQDRGYFEELITMLEAALGL--------E----RAHMGMFTELAILYSKF-KPQKMREHLE--- 264 (449)
T ss_dssp TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------T----TCCHHHHHHHHHHHHTT-CHHHHHHHHH---
T ss_pred HHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC--------c----HHHHHHHHHHHHHHHhc-CHHHHHHHHH---
Confidence 01111 11225778899999999999999888655 2 22445544444444333 3344333332
Q ss_pred hhhccCCCch-hH----HHHHHhhhHhhhhhhcHHHHHHHHHHH
Q 014143 210 AIKSAIPHPR-IM----GIIRECGGKMHMAERQWADAATDFFEA 248 (430)
Q Consensus 210 ~~~~~~~~~~-~~----~~~~~~~g~~~~~~~~y~~A~~~f~ea 248 (430)
...+.+.-|+ +. +.+|.--.-+|.+-++|..|.....+.
T Consensus 265 ~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 265 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 2223333333 22 223443455677789999998877776
No 229
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=84.32 E-value=2.6 Score=33.63 Aligned_cols=70 Identities=11% Similarity=0.100 Sum_probs=49.6
Q ss_pred cchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeecc--CCEEEEccCCccch----HHHHHHHHHHHHHHHHHHH
Q 014143 356 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV--NRLLERGDRSKGMK----KYTAIDKWNSQLRSLYQTV 425 (430)
Q Consensus 356 I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~--~g~v~~~~~~~~~~----~~~~l~~w~~~v~~l~~~v 425 (430)
++...||+.++++..-|-..|..|...|.|.-.-+.. .|......+.+... +.+.+.+|.+.+.+.+..+
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 118 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIYSKNQIRNIIQKIVQSWADRLGQELKEW 118 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997654433 23333332222222 3456667888777665443
No 230
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=83.38 E-value=5.7 Score=30.03 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=37.1
Q ss_pred HHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccC
Q 014143 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN 393 (430)
Q Consensus 347 ~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~ 393 (430)
..+......++..+||+.+|++..-|-..|..|...|.|...-+..+
T Consensus 28 ~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~ 74 (109)
T 2d1h_A 28 LKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGK 74 (109)
T ss_dssp HHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC---
T ss_pred HHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccC
Confidence 33343356799999999999999999999999999999986655443
No 231
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=83.01 E-value=6.5 Score=31.22 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=38.1
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCE
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~ 395 (430)
...++..+||+.+|++..-+-..|.+|...|.|.-..|..++.
T Consensus 46 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R 88 (138)
T 1jgs_A 46 AACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKR 88 (138)
T ss_dssp HSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSS
T ss_pred cCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCc
Confidence 3568999999999999999999999999999998877766654
No 232
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=82.87 E-value=0.39 Score=47.64 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 014143 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYRE 79 (430)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~ 79 (430)
+.++|.+.++++ +... +..++++.+.+.|+++++++.|.+
T Consensus 18 ~ld~A~~fae~~----~~~~-----vWs~La~A~l~~g~~~eAIdsfik 57 (449)
T 1b89_A 18 NLDRAYEFAERC----NEPA-----VWSQLAKAQLQKGMVKEAIDSYIK 57 (449)
T ss_dssp -------------------------------------------------
T ss_pred CHHHHHHHHHhC----CChH-----HHHHHHHHHHHcCCHHHHHHHHHc
Confidence 467777777666 1112 335788888888888888887755
No 233
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=82.41 E-value=6.8 Score=30.12 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=48.7
Q ss_pred ccccchhhHHhHh-CCChHHHHHHHHHhhhcCceeEeeeccCCE---EEEccCCc-cchHHHHHHHHHHH
Q 014143 353 YTRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNRL---LERGDRSK-GMKKYTAIDKWNSQ 417 (430)
Q Consensus 353 Y~~I~l~~lA~~l-~l~~~evE~~l~~lI~~g~i~g~IDq~~g~---v~~~~~~~-~~~~~~~l~~w~~~ 417 (430)
...+++.+||+.+ |++..-+-..|.+|...|.|..+.|..++. +.+++... .-.....+.+|..+
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~~~~~~l~~w~~~ 94 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEGILDMLXAWGAN 94 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHHHHHHHHHHHHHH
Confidence 4678999999999 999999999999999999999888876653 33343321 11334566677765
No 234
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=82.31 E-value=7.9 Score=30.68 Aligned_cols=43 Identities=7% Similarity=-0.036 Sum_probs=37.9
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCE
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~ 395 (430)
...++..+||+.+|++..-|-..|.+|...|.|.-.-|..++.
T Consensus 50 ~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R 92 (140)
T 2nnn_A 50 TGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGR 92 (140)
T ss_dssp HSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCC
Confidence 3479999999999999999999999999999998877766554
No 235
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=82.06 E-value=7.3 Score=30.99 Aligned_cols=43 Identities=7% Similarity=0.031 Sum_probs=38.0
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCE
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~ 395 (430)
...++..+||+.++++..-|-..|.+|...|.|.-..|..++.
T Consensus 48 ~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R 90 (142)
T 2fbi_A 48 QGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQR 90 (142)
T ss_dssp HCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCC
Confidence 4469999999999999999999999999999998877766654
No 236
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=81.76 E-value=8.5 Score=30.82 Aligned_cols=48 Identities=13% Similarity=0.119 Sum_probs=40.3
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC---EEEEcc
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (430)
...++..+||+.+|++..-|-..|.+|...|.|.-.-|..++ .+.+++
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~ 98 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITE 98 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECH
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECH
Confidence 678999999999999999999999999999999877665544 455543
No 237
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=81.50 E-value=3.5 Score=29.98 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=31.9
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeE
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g 387 (430)
..++..+||+.+|+|..-|-..|..|...|.|..
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 5699999999999999999999999999999974
No 238
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=81.39 E-value=7.6 Score=30.77 Aligned_cols=44 Identities=18% Similarity=0.115 Sum_probs=38.9
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEE
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLL 396 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v 396 (430)
...++..+||+.++++..-|-..|.+|...|.|.-.-|..++..
T Consensus 41 ~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~ 84 (138)
T 3bpv_A 41 EPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRR 84 (138)
T ss_dssp STTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcee
Confidence 46799999999999999999999999999999988777766543
No 239
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=81.25 E-value=12 Score=29.76 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=61.9
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhhhccCCC
Q 014143 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALAIKSAIPH 217 (430)
Q Consensus 142 La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~----~~d~~ka~~~l~~a~~~~~~~~~ 217 (430)
||.+|...+.+++|.++++..-.. | + .+-+.....+|.. .+|+.+|..++++|-.. .+
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~-----g--~-------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~ 92 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL-----N--S-------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----ND 92 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT-----T--C-------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC-----C--C-------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----CC
Confidence 888888888888898888877655 1 1 1233344566766 78999999999998543 22
Q ss_pred chhHHHHHHhhhHhhhh----hhcHHHHHHHHHHHHH
Q 014143 218 PRIMGIIRECGGKMHMA----ERQWADAATDFFEAFK 250 (430)
Q Consensus 218 ~~~~~~~~~~~g~~~~~----~~~y~~A~~~f~ea~~ 250 (430)
|. +.+ ..|.++.. .+|+.+|..+|..+.+
T Consensus 93 ~~--a~~--~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 93 QD--GCL--ILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HH--HHH--HHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HH--HHH--HHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 32 222 23666666 8999999999999865
No 240
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=80.84 E-value=7.9 Score=31.93 Aligned_cols=48 Identities=10% Similarity=0.162 Sum_probs=40.8
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC---EEEEcc
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (430)
...++..+||+.++++..-|-..|.+|...|.|.-.-|..++ .|.+++
T Consensus 58 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~ 108 (162)
T 3k0l_A 58 KPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTP 108 (162)
T ss_dssp CTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECH
Confidence 457999999999999999999999999999999888777665 444443
No 241
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=80.80 E-value=6.1 Score=31.73 Aligned_cols=49 Identities=18% Similarity=0.123 Sum_probs=38.8
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccC---CEEEEccC
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERGDR 401 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~---g~v~~~~~ 401 (430)
...++..+||+.++++..-+-..|.+|...|.|.-.-|..+ ..|.+++.
T Consensus 49 ~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~ 100 (143)
T 3oop_A 49 NEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDK 100 (143)
T ss_dssp HSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHH
T ss_pred cCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHH
Confidence 36799999999999999999999999999999987665444 45666643
No 242
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=80.73 E-value=7.8 Score=30.99 Aligned_cols=51 Identities=10% Similarity=0.036 Sum_probs=41.7
Q ss_pred ccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC---EEEEccC
Q 014143 351 KPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (430)
Q Consensus 351 ~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g---~v~~~~~ 401 (430)
.....++...||+.++++..-|-..|.+|...|.|.-.-|..++ .+.+++.
T Consensus 48 ~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~ 101 (146)
T 2fbh_A 48 RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPK 101 (146)
T ss_dssp HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTT
T ss_pred HcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHh
Confidence 45578999999999999999999999999999999876655444 5666543
No 243
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=80.72 E-value=9.3 Score=30.77 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=36.1
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCE
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~ 395 (430)
...++..+||+.++++..-|-..|.+|...|.|.-.-|..++.
T Consensus 54 ~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R 96 (150)
T 2rdp_A 54 EGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRR 96 (150)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcc
Confidence 3579999999999999999999999999999998776655553
No 244
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=80.44 E-value=59 Score=33.86 Aligned_cols=194 Identities=10% Similarity=0.028 Sum_probs=95.9
Q ss_pred CHHHHH-HHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh-------hhh---------hH
Q 014143 31 DPEGAL-AGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV-------TRN---------YS 93 (430)
Q Consensus 31 ~~~~Ai-~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~-------~k~---------~~ 93 (430)
+.++|. +.|...+...|.. ...--+.+.+....|+.+.+.+.|..++..+.... +.+ ..
T Consensus 358 ~~~~a~r~il~rAi~~~P~s----~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~ 433 (679)
T 4e6h_A 358 TDSTVITKYLKLGQQCIPNS----AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKL 433 (679)
T ss_dssp CCTTHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccch
Confidence 345665 7777666544422 23335567788889999999999999887641111 100 11
Q ss_pred HHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhc-cHHHHHHHHHHHHhhccCCCCC
Q 014143 94 EKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMG-EYGRMSKILKELHKSCQREDGT 172 (430)
Q Consensus 94 ~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g-~~~~A~~~l~el~~~~~~~~~~ 172 (430)
..+-...+.......+ .+....+++.+++.. ..... ++....|.+....| +++.|.+++....+.+.+
T Consensus 434 ~~vWi~y~~~erR~~~--l~~AR~vf~~A~~~~-~~~~~----~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~---- 502 (679)
T 4e6h_A 434 TYVYCVYMNTMKRIQG--LAASRKIFGKCRRLK-KLVTP----DIYLENAYIEYHISKDTKTACKVLELGLKYFAT---- 502 (679)
T ss_dssp HHHHHHHHHHHHHHHC--HHHHHHHHHHHHHTG-GGSCT----HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhc-CCCCh----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC----
Confidence 1111122222111111 223333444433310 00112 22335566655554 488888888888877642
Q ss_pred cchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 173 DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 173 ~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
+ . .+.+.-+++....|+..+||.++++|.+.. +++.-...++..-..+-...|+...+.+..-.+.+
T Consensus 503 -~----~---~~w~~y~~fe~~~~~~~~AR~lferal~~~---~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 503 -D----G---EYINKYLDFLIYVNEESQVKSLFESSIDKI---SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp -C----H---HHHHHHHHHHHHHTCHHHHHHHHHHHTTTS---SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred -c----h---HHHHHHHHHHHhCCCHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 1 122333445556788888988888875332 22222333333333333334454444444444433
No 245
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=80.24 E-value=8.9 Score=30.48 Aligned_cols=47 Identities=19% Similarity=0.110 Sum_probs=38.4
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC---EEEEcc
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (430)
..++..+||+.++++..-+-..|.+|...|.|.-.-|..++ .|.+++
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~ 95 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTT 95 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECH
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECH
Confidence 47999999999999999999999999999999877666555 444443
No 246
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=80.17 E-value=9.3 Score=30.52 Aligned_cols=43 Identities=23% Similarity=0.138 Sum_probs=38.3
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCE
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~ 395 (430)
...++...||+.++++..-+-..|.+|...|.|.-.-|..++.
T Consensus 45 ~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r 87 (145)
T 2a61_A 45 EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRR 87 (145)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCc
Confidence 4579999999999999999999999999999998887766654
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.15 E-value=78 Score=35.09 Aligned_cols=204 Identities=14% Similarity=0.137 Sum_probs=95.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhhh-----------------hhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHH
Q 014143 58 KQTVKLYYRLGKYKEMMDAYREMLTYIKSA-----------------VTRNYSEKCINNIMDFVSGSASQNFSLLREFYQ 120 (430)
Q Consensus 58 ~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~-----------------~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~ 120 (430)
.-+|.+|...|+++++.+++.+...-+... ........-..+++..+++.. ..+...++..
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~--~~~~vi~fa~ 923 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES--AYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS--CCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 446888899999999998886532211000 000001112233344443311 1334444444
Q ss_pred HHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHH---HHH-H-hh
Q 014143 121 TTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI---QMY-T-ET 195 (430)
Q Consensus 121 ~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~---~l~-~-~~ 195 (430)
.+++.... .+..+-..+..++-+.+++.|+|++|...|......-.. .+ .-..++....... +++ + .-
T Consensus 924 lAi~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r----~~--cLr~LV~~lce~~~~~~L~~lpf~ 996 (1139)
T 4fhn_B 924 LADASKET-DDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK----KS--CLLDFVNQLTKQGKINQLLNYSMP 996 (1139)
T ss_dssp HHHHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC----HH--HHHHHHHHHHHHCCHHHHHHHTTT
T ss_pred HHHHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH----HH--HHHHHHHHHHhCCChhhhhCCCCc
Confidence 44432111 122222223346677788899999998877655433110 01 0111121111110 111 1 12
Q ss_pred cCHHHHHHHH-HHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhc----ch-hHHHHHHHHHH
Q 014143 196 KNNKKLKQLY-QKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG----NQ-RRIQCLKYLVL 269 (430)
Q Consensus 196 ~d~~ka~~~l-~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~----~~-~~~~~lky~~l 269 (430)
|........+ .+|++.......|.+...+|. .|+..+||..|+...|+-...+.... .. ...++-.|+++
T Consensus 997 gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs----~ri~r~dyR~AA~vmYe~~~RL~~~~~~~~~~~~~~q~~~yL~~ 1072 (1139)
T 4fhn_B 997 TLRQDVDNLLERKAFQMINVESQPCWYNILFS----WRYKHQNYRDAAAIIYEKLSRYISTTELIGKKERTFIIEHYLIV 1072 (1139)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHH----HHHHHHTTSCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCccccCCCHHHHhHh----hhhccCChHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHH
Confidence 4444444333 345544322222443333222 45678999999999999866554321 11 12233347766
Q ss_pred HHHhh
Q 014143 270 ANMLM 274 (430)
Q Consensus 270 ~~lL~ 274 (430)
...|+
T Consensus 1073 INaLs 1077 (1139)
T 4fhn_B 1073 LNTLE 1077 (1139)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65565
No 248
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=80.14 E-value=4.6 Score=32.45 Aligned_cols=44 Identities=5% Similarity=0.024 Sum_probs=29.9
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEE
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLL 396 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v 396 (430)
...++.++||+.+|++..-+-..|.+|...|.|.-.-|..++..
T Consensus 49 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~ 92 (142)
T 3ech_A 49 QRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRS 92 (142)
T ss_dssp TTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC---------
T ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCCe
Confidence 34799999999999999999999999999999987777666543
No 249
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=80.11 E-value=8.4 Score=30.80 Aligned_cols=47 Identities=15% Similarity=0.050 Sum_probs=39.4
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC---EEEEc
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERG 399 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g---~v~~~ 399 (430)
...++...||+.++++..-|-..|.+|...|.|.-.-|..++ .+.++
T Consensus 41 ~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT 90 (144)
T 1lj9_A 41 NPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYAT 90 (144)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEEC
T ss_pred CcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEC
Confidence 357899999999999999999999999999999877765554 44454
No 250
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=80.05 E-value=15 Score=29.30 Aligned_cols=112 Identities=8% Similarity=0.033 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC-
Q 014143 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA- 108 (430)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~- 108 (430)
.|+++|++.|++..+.... .+. ++.+|...+..++++++|++.... + .......+-..+....
T Consensus 9 ~d~~~A~~~~~~aa~~g~~------~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g------~~~a~~~Lg~~y~~G~g 72 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM------FGC--LSLVSNSQINKQKLFQYLSKACEL--N------SGNGCRFLGDFYENGKY 72 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT------THH--HHHHTCTTSCHHHHHHHHHHHHHT--T------CHHHHHHHHHHHHHCSS
T ss_pred cCHHHHHHHHHHHHcCCCH------hhh--HHHHHHcCCCHHHHHHHHHHHHcC--C------CHHHHHHHHHHHHcCCC
Confidence 4689999999999766421 222 999999999999988888877663 1 1223334444443211
Q ss_pred -CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHH----hccHHHHHHHHHHHHhh
Q 014143 109 -SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKS 165 (430)
Q Consensus 109 -~~~~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~----~g~~~~A~~~l~el~~~ 165 (430)
..+.+....+++.+.+. -.......||.+|.. .+|+++|.++++..-..
T Consensus 73 ~~~d~~~A~~~~~~Aa~~--------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 73 VKKDLRKAAQYYSKACGL--------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 12344445555555331 112345689999998 89999999999887665
No 251
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=80.05 E-value=6.6 Score=31.54 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=34.8
Q ss_pred HHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCE
Q 014143 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (430)
Q Consensus 347 ~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~ 395 (430)
+..+.... ++..+||+.+|++..-|-..|.+|...|.|.-.-|..++.
T Consensus 44 L~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R 91 (146)
T 3tgn_A 44 LMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDAR 91 (146)
T ss_dssp HHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--------
T ss_pred HHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCc
Confidence 33444445 9999999999999999999999999999998877655554
No 252
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=80.03 E-value=7.1 Score=30.61 Aligned_cols=63 Identities=14% Similarity=0.189 Sum_probs=44.9
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCCccchHHHHHHHHHHHHHHH
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSL 421 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~~w~~~v~~l 421 (430)
..++..+||+.+|++..-|-..|..|...|.|...-+.......++ +. ....+..|......+
T Consensus 30 ~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~-~~----~~~~l~~~~~~~~~~ 92 (118)
T 3f6o_A 30 GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIE-KE----PFTAVEAWLAEQQEL 92 (118)
T ss_dssp CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC-SH----HHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEEC-HH----HHHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999988766322222222 21 345555555555443
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=79.62 E-value=8.5 Score=32.49 Aligned_cols=68 Identities=7% Similarity=0.098 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhhhcc---CCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhh
Q 014143 185 YAIEIQMYTETKNNKKLKQLYQKALAIKSA---IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (430)
Q Consensus 185 ~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (430)
+..+++-.+..+-|.-|..+.+.+.+..+. ...|........+-|..++.+++|..|...|..+..-.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK 93 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 456778888889999999988887665543 23466777777888999999999999999999997644
No 254
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=79.50 E-value=14 Score=28.31 Aligned_cols=37 Identities=11% Similarity=0.080 Sum_probs=33.8
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeee
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 390 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~ID 390 (430)
..++..+||+.+|++..-|-..|..|...|.|...-+
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 4589999999999999999999999999999987655
No 255
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=79.38 E-value=11 Score=27.94 Aligned_cols=50 Identities=12% Similarity=0.085 Sum_probs=38.8
Q ss_pred hcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEE
Q 014143 349 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (430)
Q Consensus 349 i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (430)
++..-..++..+||+.+|++..-+-..|..|...|.|...-|.......+
T Consensus 32 ~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l 81 (99)
T 3cuo_A 32 MLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSI 81 (99)
T ss_dssp HHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEE
T ss_pred HHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEE
Confidence 33334578999999999999999999999999999997765543333333
No 256
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=79.30 E-value=5.7 Score=30.67 Aligned_cols=37 Identities=8% Similarity=0.047 Sum_probs=33.9
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeee
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 390 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~ID 390 (430)
..+++.+||+.+|++..-|-..|..|...|.|...-|
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~ 73 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSGGLVEARRE 73 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 5689999999999999999999999999999987654
No 257
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=79.06 E-value=5.3 Score=37.63 Aligned_cols=83 Identities=13% Similarity=0.179 Sum_probs=57.9
Q ss_pred CCcchHHHHHHHHHHhh---------------CCHHHHHHHHHHhHHhhcCChhHHHHH-HHHHHHHHHHHHHHhcccc-
Q 014143 291 NDPEILAMTNLIAAYQR---------------NEIIEFEKILKSNRKTIMDDPFIRNYI-EDLLKNVRTQVLLKLIKPY- 353 (430)
Q Consensus 291 ~~~~~~~l~~L~~af~~---------------~dl~~f~~~l~~~~~~l~~D~~l~~~~-~~L~~~i~~~~l~~i~~~Y- 353 (430)
++|.+..=..+..++.+ +++..|..+... ...|++..++ +....++|..+|..+.+.|
T Consensus 145 ~~p~Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFrL~~~-----~~~pyL~aclle~~~~~vR~~AL~~i~kay~ 219 (316)
T 3t5v_A 145 QDKLVQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQLMQS-----PSLPLLMGFFLQMHLTDIRFYALRALSHTLN 219 (316)
T ss_dssp TSHHHHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHHHHTC-----TTSCHHHHHHHGGGHHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHHHHhcccccccccccccccchHHHHHHHHhc-----cCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555543356666642 688888876543 1135655443 3456789999999999988
Q ss_pred ---cccchhhHHhHhCCC-hHHHHHHHHH
Q 014143 354 ---TRIRIPFISKELNVP-EKDVEQLLVS 378 (430)
Q Consensus 354 ---~~I~l~~lA~~l~l~-~~evE~~l~~ 378 (430)
..++++++++.|+++ .++++.++..
T Consensus 220 ~k~~~~pl~~L~~~L~Fds~ee~~~F~~~ 248 (316)
T 3t5v_A 220 KKHKPIPFIYLENMLLFNNRQEIIEFCNY 248 (316)
T ss_dssp TTCCCEEHHHHHHHTTCSSHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 489999999999995 7787777643
No 258
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=78.71 E-value=11 Score=30.28 Aligned_cols=68 Identities=19% Similarity=0.105 Sum_probs=50.8
Q ss_pred hhHHHHHHhhcccCCCC-H---HHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 15 VSRVLCSILEKGLVETD-P---EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 15 ~~~~~~~~~ak~~~~~~-~---~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
++....+--|-.+..++ + ..+|.++.+++..+. ..-.-.++..++--|++.|+|+++..++..++..-
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~--p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS--KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 34444555555555553 4 459999999988752 12246789999999999999999999999999863
No 259
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=78.69 E-value=7.1 Score=30.95 Aligned_cols=42 Identities=2% Similarity=0.133 Sum_probs=36.9
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g 394 (430)
...++..+||+.++++..-|-..|.+|...|.|.-.-|..++
T Consensus 45 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 86 (139)
T 3bja_A 45 SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQ 86 (139)
T ss_dssp SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCC
Confidence 457999999999999999999999999999999876665554
No 260
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=78.62 E-value=9.3 Score=30.99 Aligned_cols=51 Identities=20% Similarity=0.203 Sum_probs=40.8
Q ss_pred cccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC---EEEEcc
Q 014143 350 IKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (430)
Q Consensus 350 ~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (430)
+.....++...||+.++++..-|-..|.+|...|.|.-.-|..++ .+.+++
T Consensus 46 l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~ 99 (155)
T 1s3j_A 46 LKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTD 99 (155)
T ss_dssp HHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECH
T ss_pred HHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECH
Confidence 333457999999999999999999999999999999877665544 444443
No 261
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=78.28 E-value=15 Score=27.30 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=34.6
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeec
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq 391 (430)
..+++.+||+.+|++..-|-..|..|...|.|...-+.
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g 72 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEA 72 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 68999999999999999999999999999999876443
No 262
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=77.99 E-value=12 Score=30.42 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=39.5
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC---EEEEcc
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (430)
...++..+||+.++++..-|-..|.+|...|.|.-.-|..++ .+.+++
T Consensus 56 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~ 106 (154)
T 2eth_A 56 FGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTE 106 (154)
T ss_dssp HCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECH
Confidence 347999999999999999999999999999999877765554 444443
No 263
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=77.89 E-value=12 Score=31.40 Aligned_cols=84 Identities=14% Similarity=0.039 Sum_probs=48.5
Q ss_pred hccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhc----------CHHHHHHHHHHHHhhhccCCCc
Q 014143 149 MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK----------NNKKLKQLYQKALAIKSAIPHP 218 (430)
Q Consensus 149 ~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~----------d~~ka~~~l~~a~~~~~~~~~~ 218 (430)
.+.|++|.+.+......-.+ + .+.+.....++...+ .+.+|...|++|.++...
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~-----~-------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~---- 78 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPL-----D-------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---- 78 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HhHHHHHHHHHHHHHHHCCC-----C-------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC----
Confidence 35677777777776666321 1 223332233333333 366899999988876432
Q ss_pred hhHHHHHHhhhHhhhhh-----------hcHHHHHHHHHHHHH
Q 014143 219 RIMGIIRECGGKMHMAE-----------RQWADAATDFFEAFK 250 (430)
Q Consensus 219 ~~~~~~~~~~g~~~~~~-----------~~y~~A~~~f~ea~~ 250 (430)
. ...+.+.|..+... ++|.+|..+|..+.+
T Consensus 79 -~-~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 79 -K-DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp -C-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -c-HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 1 22334446666544 478888888888765
No 264
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=77.83 E-value=8.1 Score=31.24 Aligned_cols=52 Identities=8% Similarity=0.049 Sum_probs=41.4
Q ss_pred hcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccC---CEEEEcc
Q 014143 349 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERGD 400 (430)
Q Consensus 349 i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~---g~v~~~~ 400 (430)
.+.....++..+||+.+|++..-+-..|.+|...|.|.-.-|..+ ..+.+++
T Consensus 48 ~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~ 102 (152)
T 3bj6_A 48 GLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTP 102 (152)
T ss_dssp HHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECH
T ss_pred HHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEECh
Confidence 333345799999999999999999999999999999987665444 3555554
No 265
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=77.80 E-value=12 Score=30.00 Aligned_cols=48 Identities=13% Similarity=0.064 Sum_probs=37.6
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC---EEEEcc
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (430)
...++...||+.+|++..-|-..|.+|...|.|.-.-|..++ .+.+++
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~ 98 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSS 98 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECH
Confidence 567999999999999999999999999999999876555444 455554
No 266
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=77.48 E-value=11 Score=32.13 Aligned_cols=44 Identities=11% Similarity=0.257 Sum_probs=39.5
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCE
Q 014143 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (430)
Q Consensus 352 ~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~ 395 (430)
|...++.+.||+.++++..-|-..|.+|...|.|.-.-|..++.
T Consensus 54 ~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR 97 (189)
T 3nqo_A 54 PEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKR 97 (189)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSS
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCCC
Confidence 45689999999999999999999999999999999888777653
No 267
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=77.23 E-value=9.3 Score=31.31 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=38.7
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC---EEEEcc
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (430)
...++..+||+.++++..-+-..|.+|...|.|.-.-|..++ .|.+++
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~ 112 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTE 112 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECH
Confidence 367999999999999999999999999999999877766555 455553
No 268
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=76.92 E-value=11 Score=31.24 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=40.0
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC---EEEEcc
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (430)
...++..+||+.+|++..-|-..|.+|...|.|.-..|..++ .|.+++
T Consensus 57 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~ 107 (168)
T 2nyx_A 57 HGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTK 107 (168)
T ss_dssp HCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECH
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECH
Confidence 357999999999999999999999999999999877776555 344443
No 269
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=76.66 E-value=11 Score=28.12 Aligned_cols=49 Identities=10% Similarity=0.045 Sum_probs=41.5
Q ss_pred ccccchhhH----HhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 353 YTRIRIPFI----SKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 353 Y~~I~l~~l----A~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
...++..+| |+.++++..-+-..|.+|...|.|.-..|.....+.+++.
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~ 72 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEK 72 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHH
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHH
Confidence 467889999 9999999999999999999999998888875556666654
No 270
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=76.58 E-value=11 Score=30.63 Aligned_cols=54 Identities=9% Similarity=0.054 Sum_probs=40.3
Q ss_pred HHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccC---CEEEEcc
Q 014143 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERGD 400 (430)
Q Consensus 347 ~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~---g~v~~~~ 400 (430)
+.++.....++..+||+.+|++..-|-..|.+|...|.|.-..|..+ ..+.+++
T Consensus 49 L~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~ 105 (155)
T 3cdh_A 49 LACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTD 105 (155)
T ss_dssp HHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECH
T ss_pred HHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECH
Confidence 33444456799999999999999999999999999999986655444 4455554
No 271
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=75.97 E-value=12 Score=30.71 Aligned_cols=48 Identities=13% Similarity=0.053 Sum_probs=38.4
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccC---CEEEEcc
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERGD 400 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~---g~v~~~~ 400 (430)
...++..+||+.++++..-|-..|.+|...|.|.-.-|..+ ..+.+++
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~ 114 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTP 114 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECH
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECH
Confidence 45799999999999999999999999999999987665444 3455543
No 272
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=75.59 E-value=4.6 Score=32.95 Aligned_cols=47 Identities=15% Similarity=0.240 Sum_probs=39.5
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeE---eeecc
Q 014143 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG---HIDQV 392 (430)
Q Consensus 346 l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g---~IDq~ 392 (430)
|+..+....++++.+||+.+|+|...|-..+.+|...|.|.+ .+|+.
T Consensus 10 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 10 IIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecccChh
Confidence 444455557899999999999999999999999999999964 56765
No 273
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=75.57 E-value=4.3 Score=33.41 Aligned_cols=48 Identities=13% Similarity=0.215 Sum_probs=40.1
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeE---eeeccC
Q 014143 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG---HIDQVN 393 (430)
Q Consensus 346 l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g---~IDq~~ 393 (430)
|+..+....++++.+||+.+|+|...+-..+.+|...|.|.+ .+|+..
T Consensus 13 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~ 63 (152)
T 2cg4_A 13 ILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPKQ 63 (152)
T ss_dssp HHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTTT
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHHH
Confidence 344444557899999999999999999999999999999964 678653
No 274
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=75.49 E-value=15 Score=27.76 Aligned_cols=66 Identities=11% Similarity=0.043 Sum_probs=45.6
Q ss_pred cchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCCccchHHHHHHH---HHHHHHHHHHHHhh
Q 014143 356 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDK---WNSQLRSLYQTVSN 427 (430)
Q Consensus 356 I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~~---w~~~v~~l~~~v~~ 427 (430)
++...||..+|++...+...+-.|...|.|.-. .|-..+++... ...+.+.. +...+..+...+.+
T Consensus 21 ~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~----~~~~~LT~kG~--~~l~~l~~~~~~l~~l~~~e~~l~~ 89 (95)
T 1r7j_A 21 SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE----GKQYMLTKKGE--ELLEDIRKFNEMRKNMDQLKEKINS 89 (95)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE----TTEEEECHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE----CCeeEEChhHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998654 33355555432 23444444 44444444444433
No 275
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=75.28 E-value=6.9 Score=31.47 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=40.2
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccC---CEEEEccC
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERGDR 401 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~---g~v~~~~~ 401 (430)
...++..+||+.++++..-+-..|.+|...|.|.-.-|..+ ..|.+++.
T Consensus 43 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~ 94 (145)
T 3g3z_A 43 EGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTET 94 (145)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChh
Confidence 34599999999999999999999999999999986655544 45666643
No 276
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=74.98 E-value=7.7 Score=31.76 Aligned_cols=55 Identities=13% Similarity=0.099 Sum_probs=40.9
Q ss_pred HHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEcc
Q 014143 344 QVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (430)
Q Consensus 344 ~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (430)
+.+..+...... +.+.||+.+++|...+++.+.+|...|.|...=. ..|+.--.+
T Consensus 13 ~~L~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG-~GGy~Lar~ 67 (145)
T 1xd7_A 13 HILSLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG-VPGASLKKD 67 (145)
T ss_dssp HHHHHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS-SSSCEESSC
T ss_pred HHHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC-CCCceecCC
Confidence 344545443445 9999999999999999999999999999976544 444443333
No 277
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=74.66 E-value=4.7 Score=33.62 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=39.0
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcee---Eeeecc
Q 014143 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 392 (430)
Q Consensus 346 l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~---g~IDq~ 392 (430)
|+..+....++++.+||+.+|+|...+-..+.+|...|.|. +.+|+.
T Consensus 15 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 15 ILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChH
Confidence 34445555679999999999999999999999999999996 456654
No 278
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=74.58 E-value=9.7 Score=29.54 Aligned_cols=74 Identities=11% Similarity=0.073 Sum_probs=51.6
Q ss_pred HHHHhcccccccchhhHHhHh-CCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCC-ccchHHHHHHHHHHHHH
Q 014143 345 VLLKLIKPYTRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS-KGMKKYTAIDKWNSQLR 419 (430)
Q Consensus 345 ~l~~i~~~Y~~I~l~~lA~~l-~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~-~~~~~~~~l~~w~~~v~ 419 (430)
.|..+..--.++++.+|++.+ |++..-+-..|..|-..|.|.-+.+ ....+..++.. ........+..|.....
T Consensus 32 IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~-r~~~y~LT~~G~~l~~~l~~l~~w~~~~~ 107 (111)
T 3df8_A 32 IISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG-QITTYALTEKGMNVRNSLMPLLQYISVLD 107 (111)
T ss_dssp HHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES-SSEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec-CcEEEEECccHHHHHHHHHHHHHHHHHhc
Confidence 334443322346699999999 9999999999999999999998888 44444444432 11124567777887654
No 279
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=74.50 E-value=9.8 Score=31.16 Aligned_cols=47 Identities=15% Similarity=0.163 Sum_probs=35.3
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC---EEEEc
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERG 399 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g---~v~~~ 399 (430)
...++...||+.++++..-|-..|.+|...|.|.-.-|..++ .+.++
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT 110 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALS 110 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEEC
Confidence 467999999999999999999999999999999866654444 44444
No 280
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=74.10 E-value=11 Score=31.08 Aligned_cols=49 Identities=8% Similarity=0.121 Sum_probs=38.9
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccC---CEEEEccC
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERGDR 401 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~---g~v~~~~~ 401 (430)
...++..+||+.++++..-+-..|.+|...|.|.-.-|..+ ..|.+++.
T Consensus 65 ~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~ 116 (161)
T 3e6m_A 65 YGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRK 116 (161)
T ss_dssp HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHH
Confidence 34799999999999999999999999999999986665544 45666643
No 281
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=73.97 E-value=8.9 Score=30.85 Aligned_cols=49 Identities=12% Similarity=0.106 Sum_probs=36.2
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC---EEEEcc
Q 014143 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (430)
Q Consensus 352 ~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (430)
....++..+||+.++++..-|-..|.+|...|.|.-.-|..++ .|.+++
T Consensus 51 ~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~ 102 (148)
T 3nrv_A 51 SASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTE 102 (148)
T ss_dssp HSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEECH
T ss_pred cCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECH
Confidence 3458999999999999999999999999999999866555444 455553
No 282
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=73.81 E-value=1.8 Score=33.65 Aligned_cols=50 Identities=20% Similarity=0.123 Sum_probs=37.5
Q ss_pred HhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEe--eeccCCEEE
Q 014143 348 KLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH--IDQVNRLLE 397 (430)
Q Consensus 348 ~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~--IDq~~g~v~ 397 (430)
.+..+=..++...||+.+|+|..-|-..+..|...|.+... -|+..|...
T Consensus 26 ~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v 77 (110)
T 1q1h_A 26 ILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFI 77 (110)
T ss_dssp HHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEEC---CCCCE
T ss_pred HHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecccCCCceEE
Confidence 33345446899999999999999999999999999999754 223445433
No 283
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=73.75 E-value=12 Score=28.73 Aligned_cols=65 Identities=15% Similarity=0.027 Sum_probs=47.3
Q ss_pred ccccchhhHHhHh-CCChHHHHHHHHHhhhcCceeEeeeccCCE---EEEccCC-ccchHHHHHHHHHHH
Q 014143 353 YTRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNRL---LERGDRS-KGMKKYTAIDKWNSQ 417 (430)
Q Consensus 353 Y~~I~l~~lA~~l-~l~~~evE~~l~~lI~~g~i~g~IDq~~g~---v~~~~~~-~~~~~~~~l~~w~~~ 417 (430)
...+++.+||+.+ |++..-+-..|.+|...|.|..+.|..++. +.+++.. ..-.....+.+|..+
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~l~~l~~w~~~ 105 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLPIIDEIAKFGME 105 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHHHHHHHHHHHHH
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHHHHHHHHHHHHHH
Confidence 4578999999999 599999999999999999999888776653 3333321 111234566677653
No 284
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=73.36 E-value=6.2 Score=31.45 Aligned_cols=47 Identities=15% Similarity=0.054 Sum_probs=39.4
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC---EEEEc
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERG 399 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g---~v~~~ 399 (430)
...++..+||+.++++..-|-..|.+|...|.|.-.-|..++ .+.++
T Consensus 43 ~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT 92 (142)
T 3bdd_A 43 DAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPT 92 (142)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEEC
Confidence 457999999999999999999999999999999877765544 44444
No 285
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=72.97 E-value=5.2 Score=32.84 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=39.2
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeE---eeecc
Q 014143 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG---HIDQV 392 (430)
Q Consensus 346 l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g---~IDq~ 392 (430)
|+..+....+++..+||+.+|+|...+-..+.+|...|.|.+ .+|..
T Consensus 14 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 14 LVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChH
Confidence 344455557899999999999999999999999999999863 46754
No 286
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=72.87 E-value=7.9 Score=31.42 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=39.3
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeE--eeeccCC---EEEEcc
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG--HIDQVNR---LLERGD 400 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g--~IDq~~g---~v~~~~ 400 (430)
...++..+||+.++++..-|-..|.+|...|.|.- .-|..++ .+.+++
T Consensus 53 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~ 105 (154)
T 2qww_A 53 TPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSK 105 (154)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECH
Confidence 35699999999999999999999999999999987 6665555 566654
No 287
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=72.85 E-value=13 Score=29.55 Aligned_cols=46 Identities=9% Similarity=0.122 Sum_probs=39.1
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC---EEEEcc
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (430)
.++...||+.++++..-|-..|.+|...|.|.-.-|..++ .+.+++
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~ 98 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTK 98 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECH
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECH
Confidence 7999999999999999999999999999999877665554 455553
No 288
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=72.70 E-value=13 Score=29.79 Aligned_cols=42 Identities=19% Similarity=0.082 Sum_probs=38.0
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCE
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~ 395 (430)
..++..+||+.+|+|..-|-..|.+|...|.|.-.-|..++.
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~r 81 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGERK 81 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCSS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCce
Confidence 579999999999999999999999999999999887776653
No 289
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=72.34 E-value=6.9 Score=31.77 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=48.9
Q ss_pred hhHHHHHHhhcccCCC----CHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014143 15 VSRVLCSILEKGLVET----DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (430)
Q Consensus 15 ~~~~~~~~~ak~~~~~----~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (430)
|+.-..+--|-++..+ +...+|..+.+++..+++. .-.++..++--+++.|+|+.+..+...++..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~---~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR---RRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3344444444444333 4568999999998765432 4678999999999999999999999999875
No 290
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=72.31 E-value=18 Score=29.88 Aligned_cols=49 Identities=8% Similarity=0.056 Sum_probs=37.8
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccC---CEEEEccC
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERGDR 401 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~---g~v~~~~~ 401 (430)
...++..+||+.++++..-|-..|.+|...|.|.-.-|..+ ..|.+++.
T Consensus 66 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~ 117 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEK 117 (166)
T ss_dssp CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGG
T ss_pred CCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHH
Confidence 34699999999999999999999999999999987665444 45666653
No 291
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=72.10 E-value=4.6 Score=33.79 Aligned_cols=49 Identities=12% Similarity=0.251 Sum_probs=41.7
Q ss_pred HHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcee---EeeeccC
Q 014143 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQVN 393 (430)
Q Consensus 345 ~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~---g~IDq~~ 393 (430)
.|+..++.-.++++.+||+.+|+|...|-.-+-+|...|.|. +.+|+..
T Consensus 7 ~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~~ 58 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPVK 58 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHHH
Confidence 456666666789999999999999999999999999999986 5677653
No 292
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=71.34 E-value=6.7 Score=32.12 Aligned_cols=46 Identities=9% Similarity=0.121 Sum_probs=38.2
Q ss_pred HHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcee---Eeeecc
Q 014143 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 392 (430)
Q Consensus 347 ~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~---g~IDq~ 392 (430)
+..+....++++.+||+.+|++...+-..+.+|...|.|. +.+|+.
T Consensus 13 L~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 13 VRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEeccChh
Confidence 3344445789999999999999999999999999999995 456655
No 293
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=71.02 E-value=4.9 Score=29.69 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=33.4
Q ss_pred HhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeE
Q 014143 348 KLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (430)
Q Consensus 348 ~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g 387 (430)
.+++.-. ++..+||+.||++...|-..|-+|-.+|.|..
T Consensus 24 ~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 24 KTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp HHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 3444333 99999999999999999999999999999865
No 294
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=70.92 E-value=18 Score=27.86 Aligned_cols=66 Identities=8% Similarity=0.030 Sum_probs=47.3
Q ss_pred cccchhhHHhHh-CCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCCcc-chH---HHHHHHHHHHHH
Q 014143 354 TRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKG-MKK---YTAIDKWNSQLR 419 (430)
Q Consensus 354 ~~I~l~~lA~~l-~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~-~~~---~~~l~~w~~~v~ 419 (430)
..+++.+||+.+ +++..-+-..|.+|...|.|....|..++......-.+. ... ...+.+|.....
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~~~~~~l~~w~~~~~ 104 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYDALSSLCHWGETFA 104 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHHHHHHHHHHHHHHHH
Confidence 568999999999 999999999999999999999888876654333221111 112 245566766543
No 295
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=70.53 E-value=16 Score=29.49 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=32.1
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCE
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~ 395 (430)
..++..+||+.++++..-+-..|.+|...|.|.-.-|..++.
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R 94 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRR 94 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC--------
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccc
Confidence 358999999999999999999999999999998766666654
No 296
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=70.01 E-value=30 Score=27.57 Aligned_cols=66 Identities=15% Similarity=0.060 Sum_probs=47.8
Q ss_pred ccccchhhHHhHh-CCChHHHHHHHHHhhhcCceeEeeeccCCEE---EEccCCc-cchHHHHHHHHHHHH
Q 014143 353 YTRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNRLL---ERGDRSK-GMKKYTAIDKWNSQL 418 (430)
Q Consensus 353 Y~~I~l~~lA~~l-~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v---~~~~~~~-~~~~~~~l~~w~~~v 418 (430)
....++.+|++.+ |++..-+-..|.+|...|.|.-+.|..++.. .+++... .-.....+.+|....
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~l~~l~~w~~~~ 116 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDXVAALADWIELN 116 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHHHHHHHHHHHHHHH
Confidence 4678999999999 7999999999999999999998888766533 3333211 112234556676644
No 297
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=70.00 E-value=6.9 Score=33.07 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=38.6
Q ss_pred HHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcee---Eeeecc
Q 014143 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 392 (430)
Q Consensus 347 ~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~---g~IDq~ 392 (430)
+..+..-.++++.+||+.+|+|...|-..+.+|...|.|. +.+|+.
T Consensus 23 L~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 23 LRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTT
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHH
Confidence 4444445689999999999999999999999999999996 456765
No 298
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=69.80 E-value=7.7 Score=31.89 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=50.3
Q ss_pred hhHHHHHHhhcccCCC----CHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014143 15 VSRVLCSILEKGLVET----DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (430)
Q Consensus 15 ~~~~~~~~~ak~~~~~----~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (430)
++....|--|-.+..+ +...+|..++.++...++. .-.++..++--+++.|+|+++..+...++..
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~---~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR---RRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST---HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc---hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4444555555445433 3568999999998865542 4678999999999999999999999999885
No 299
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=69.77 E-value=18 Score=26.88 Aligned_cols=63 Identities=10% Similarity=0.120 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhcC---HHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHh
Q 014143 183 EVYAIEIQMYTETKN---NKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (430)
Q Consensus 183 e~~l~~~~l~~~~~d---~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (430)
+++...+......++ ..+|+..++++...... ...+. ...|..++..|+|.+|..+|....+.
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~----~~rA~--~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY----NEAAL--SLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT----CHHHH--HHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC----CHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444443443 68999999999875322 12233 33489999999999999999998764
No 300
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=69.75 E-value=17 Score=29.66 Aligned_cols=53 Identities=21% Similarity=0.144 Sum_probs=39.7
Q ss_pred HHHHhccc--ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEE
Q 014143 345 VLLKLIKP--YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLE 397 (430)
Q Consensus 345 ~l~~i~~~--Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~ 397 (430)
.+..+... -..++..+||+.+++|...+++.+.+|-..|.|...=....|..-
T Consensus 16 ~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~L 70 (143)
T 3t8r_A 16 LMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQL 70 (143)
T ss_dssp HHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEE
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeee
Confidence 44444432 246999999999999999999999999999999765333334433
No 301
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=69.74 E-value=26 Score=29.22 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=38.5
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
..++..+||+.+++|+..+++.+.+|...|.|...=....|..--.++
T Consensus 43 ~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 90 (159)
T 3lwf_A 43 GPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDP 90 (159)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecCCH
Confidence 469999999999999999999999999999998764444454443433
No 302
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=69.74 E-value=46 Score=27.49 Aligned_cols=65 Identities=11% Similarity=-0.013 Sum_probs=47.6
Q ss_pred HHhHHHHHHHHHhc---cHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 137 KTNLKLCKIWFDMG---EYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 137 r~~~~La~~~~~~g---~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
.+..++|-.+...+ +++++..+|.++..... + ...-+.+...+-.|.+.+||.+|+.+.+.+..+
T Consensus 33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~------p----~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS------K----EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC------H----HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC------c----cchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44557777777766 78899999999988730 1 123345555566778999999999999988765
No 303
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=69.38 E-value=13 Score=29.54 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=35.3
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
..++..+||+.+|+|...+++.+..|...|.|...=....|+.--.
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~ 70 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGS 70 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEESS
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEeCC
Confidence 5789999999999999999999999999999875433333444333
No 304
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=69.38 E-value=12 Score=30.24 Aligned_cols=53 Identities=9% Similarity=0.205 Sum_probs=38.6
Q ss_pred HHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeE--eeeccCC---EEEEcc
Q 014143 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG--HIDQVNR---LLERGD 400 (430)
Q Consensus 347 ~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g--~IDq~~g---~v~~~~ 400 (430)
+.++ ....++..+||+.++++..-|-..|.+|...|.|.- ..|..++ .|..++
T Consensus 44 L~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~ 101 (151)
T 3kp7_A 44 LNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSN 101 (151)
T ss_dssp HHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-----------CCBEECH
T ss_pred HHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECH
Confidence 3344 567899999999999999999999999999999985 3355555 455553
No 305
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=68.63 E-value=5.1 Score=33.95 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=38.9
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcee---Eeeecc
Q 014143 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 392 (430)
Q Consensus 346 l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~---g~IDq~ 392 (430)
|+..+....++++.+||+.+|++...|-..+.+|...|.|. +.+|+.
T Consensus 32 IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~~ 81 (171)
T 2e1c_A 32 IIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPE 81 (171)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECHH
Confidence 34444445789999999999999999999999999999985 457764
No 306
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=68.35 E-value=26 Score=27.80 Aligned_cols=40 Identities=10% Similarity=0.168 Sum_probs=36.5
Q ss_pred chhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEE
Q 014143 357 RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLL 396 (430)
Q Consensus 357 ~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v 396 (430)
+.+.||+.+|++..-+-..|.+|...|.|.-.-|..++..
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~ 91 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRI 91 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCce
Confidence 9999999999999999999999999999998887777643
No 307
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=67.58 E-value=6.5 Score=32.13 Aligned_cols=47 Identities=21% Similarity=0.397 Sum_probs=39.6
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeE---eeecc
Q 014143 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG---HIDQV 392 (430)
Q Consensus 346 l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g---~IDq~ 392 (430)
|+..+..-.+++..+||+.+|++...+-..+.+|...|.|.+ .+|+.
T Consensus 8 il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 8 ILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp HHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEeecCHH
Confidence 444555556899999999999999999999999999999965 67764
No 308
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=67.49 E-value=13 Score=30.36 Aligned_cols=49 Identities=20% Similarity=0.200 Sum_probs=37.1
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC---EEEEcc
Q 014143 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (430)
Q Consensus 352 ~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (430)
....++..+||+.++++..-+-..|.+|...|.|.-.-|..++ .+.+++
T Consensus 59 ~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~ 110 (160)
T 3boq_A 59 NPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTD 110 (160)
T ss_dssp CTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECH
T ss_pred cCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEECh
Confidence 4467999999999999999999999999999999866555444 455554
No 309
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=66.92 E-value=5.5 Score=32.73 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=38.5
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcee---Eeeecc
Q 014143 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 392 (430)
Q Consensus 346 l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~---g~IDq~ 392 (430)
|+..+....++++.+||+.+|+|...+-..+.+|...|.|. +.+|+.
T Consensus 12 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (151)
T 2cyy_A 12 IIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPE 61 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCGG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECHH
Confidence 34444445789999999999999999999999999999985 456653
No 310
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=66.68 E-value=83 Score=29.27 Aligned_cols=34 Identities=9% Similarity=0.015 Sum_probs=28.8
Q ss_pred CcchHHHHHHHHHHhhCCHHHHHHHHHHhHHhhc
Q 014143 292 DPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIM 325 (430)
Q Consensus 292 ~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~ 325 (430)
.|.+..+.-|+.+...++...|..+.+.|++.+.
T Consensus 242 ~pllnF~~lLl~t~e~~~~~lF~~L~~~Y~~~L~ 275 (312)
T 2wpv_A 242 YSDLNFLQLLLITCQTKDKSYFLNLKNHYLDFSQ 275 (312)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHCHHHHH
T ss_pred CccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 5778888889999999999999999999887654
No 311
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=66.58 E-value=41 Score=27.25 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=40.3
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC---EEEEccC
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g---~v~~~~~ 401 (430)
..++.+.||+.++++..-+-..|.+|...|.|.=..|..++ .|.+++.
T Consensus 45 ~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~ 95 (151)
T 4aik_A 45 PEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQ 95 (151)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGG
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHH
Confidence 35667899999999999999999999999999888887776 4555543
No 312
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=65.33 E-value=17 Score=29.74 Aligned_cols=46 Identities=7% Similarity=-0.022 Sum_probs=35.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEcc
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (430)
..++..+||+.+++|...+++.+.+|...|.|...=. ..|+.--.+
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG-~GGy~L~~~ 74 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG-PGGAGLLKD 74 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC-CCceEeCCC
Confidence 5799999999999999999999999999999876544 334433333
No 313
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=64.11 E-value=31 Score=27.66 Aligned_cols=67 Identities=9% Similarity=0.050 Sum_probs=50.0
Q ss_pred ccccchhhHHhHh-CCChHHHHHHHHHhhhcCceeEeeeccCCE---EEEccCC-ccchHHHHHHHHHHHHH
Q 014143 353 YTRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNRL---LERGDRS-KGMKKYTAIDKWNSQLR 419 (430)
Q Consensus 353 Y~~I~l~~lA~~l-~l~~~evE~~l~~lI~~g~i~g~IDq~~g~---v~~~~~~-~~~~~~~~l~~w~~~v~ 419 (430)
....++++|++.+ |++..-+-..|.+|..+|.|.=+.+..++. +..++.. ........+.+|+..-.
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~~l~~l~~W~~~~~ 108 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQMKEWGESNR 108 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999 999999999999999999998777766542 2333321 22234677888886543
No 314
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=63.76 E-value=8.1 Score=31.10 Aligned_cols=41 Identities=24% Similarity=0.367 Sum_probs=35.1
Q ss_pred HHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeE
Q 014143 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (430)
Q Consensus 347 ~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g 387 (430)
+..+..-.++++.+||+.+|+|..-+-..+.+|...|.|.+
T Consensus 10 l~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 10 LEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEec
Confidence 33444456889999999999999999999999999999964
No 315
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=63.58 E-value=11 Score=30.32 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=27.3
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEE
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLL 396 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v 396 (430)
..++..+||+.++++..-+-..|.+|...|.|.-.-|..++..
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~ 98 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQ 98 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCchh
Confidence 6799999999999999999999999999999987776666543
No 316
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=62.51 E-value=17 Score=28.22 Aligned_cols=63 Identities=21% Similarity=0.175 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 335 ~~L~~~i~~~~l~~i~~~Y~~I-~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
..+++.++..-+..-..|=.++ +...||+.+|++..-|.+-+..|..+|.|..+ +..|+.+..
T Consensus 12 ~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~--~~~G~~V~~ 75 (113)
T 3tqn_A 12 QQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR--RGLGMLVKA 75 (113)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECT
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--cCCeEEEeC
Confidence 3445555544444455677888 89999999999999999999999999998543 556665543
No 317
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=62.39 E-value=20 Score=29.54 Aligned_cols=42 Identities=17% Similarity=0.059 Sum_probs=35.4
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCE
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~ 395 (430)
..++...||+.++++..-|-..|.+|...|.|.-.-|..++.
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR 102 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRR 102 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCC
Confidence 479999999999999999999999999999999888777764
No 318
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=62.02 E-value=12 Score=27.83 Aligned_cols=47 Identities=13% Similarity=0.307 Sum_probs=38.2
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
.++..+||+.++++..-|-..|.+|...|.|...-|.-...|.+++.
T Consensus 30 ~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~ 76 (95)
T 2qvo_A 30 DVYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDK 76 (95)
T ss_dssp CEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChh
Confidence 39999999999999999999999999999994444544456666643
No 319
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=61.88 E-value=23 Score=27.80 Aligned_cols=48 Identities=15% Similarity=0.154 Sum_probs=39.5
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC---EEEEccC
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g---~v~~~~~ 401 (430)
..++..+||+.++++..-+-..|-+|...|.|.-.-|..++ .|.+++.
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~ 102 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQ 102 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHH
Confidence 56999999999999999999999999999999766555554 4555543
No 320
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=61.15 E-value=19 Score=28.59 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=39.5
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC---EEEEcc
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (430)
...++...||+.++++..-|-..|.+|...|.|.-.-|..++ .+.+++
T Consensus 49 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~ 99 (142)
T 2bv6_A 49 ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTD 99 (142)
T ss_dssp SSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECH
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEECh
Confidence 346999999999999999999999999999999877765444 444443
No 321
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=61.00 E-value=20 Score=26.56 Aligned_cols=46 Identities=20% Similarity=0.128 Sum_probs=36.4
Q ss_pred ccchhhHHhHhCCChHH-HHHHHHHhhhcCcee-EeeeccCCEEEEcc
Q 014143 355 RIRIPFISKELNVPEKD-VEQLLVSLILDNRID-GHIDQVNRLLERGD 400 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~e-vE~~l~~lI~~g~i~-g~IDq~~g~v~~~~ 400 (430)
.++..+||+.++++..- +-..|.+|...|.|. ..-|+....+.+++
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~ 77 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTE 77 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECH
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECH
Confidence 69999999999999999 999999999999998 12233334455544
No 322
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=60.61 E-value=40 Score=29.99 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=38.6
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEcc
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (430)
.-..+.+.||+.+|+|+..|+..+.+|...|-+. -..+|.|.+.+
T Consensus 176 ~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~---~~~~~~~~~~~ 220 (232)
T 2qlz_A 176 NGRATVEELSDRLNLKEREVREKISEMARFVPVK---IINDNTVVLDE 220 (232)
T ss_dssp SSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEE---EETTTEEEECH
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeE---EecCCeEEecH
Confidence 4788999999999999999999999999999987 34567777654
No 323
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=60.30 E-value=24 Score=28.69 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=46.9
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC--EEEEccCC-ccchHHHHHHHHHHH
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR--LLERGDRS-KGMKKYTAIDKWNSQ 417 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g--~v~~~~~~-~~~~~~~~l~~w~~~ 417 (430)
....++.+|++.+|++..-+-..|.+|...|.|.-..|..++ .+.+++.. ..-.....+.+|...
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~~~l~~l~~w~~~ 102 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALFPLLVAIRQWGED 102 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999988876655 22333221 111234456667654
No 324
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=60.14 E-value=53 Score=29.94 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=46.0
Q ss_pred cCCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
++.+++++|++....-|..+|.+ .+.=..+.++++=.|+|+.+...++.+.+..
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~d----a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKD----ASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HhCCCHHHHHHHHHHHHHhCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 56678999999999999998865 3444568899999999999999999998875
No 325
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=59.84 E-value=29 Score=27.48 Aligned_cols=54 Identities=11% Similarity=0.144 Sum_probs=40.7
Q ss_pred HHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC---EEEEcc
Q 014143 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (430)
Q Consensus 347 ~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (430)
+.++.....++.++||+.++++..-+-..|.+|...|.|.-.-|..++ .|.+++
T Consensus 42 L~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~ 98 (140)
T 3hsr_A 42 LMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTE 98 (140)
T ss_dssp HHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECH
T ss_pred HHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeECh
Confidence 344444568999999999999999999999999999999877666555 555554
No 326
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=59.83 E-value=22 Score=25.67 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=34.4
Q ss_pred hcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEe
Q 014143 349 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (430)
Q Consensus 349 i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~ 388 (430)
-+.+=...+...||..||++..+|-+.|-+|-..|.+...
T Consensus 23 ~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 23 SLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp TSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecC
Confidence 4445566999999999999999999999999999988653
No 327
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=58.67 E-value=54 Score=24.39 Aligned_cols=47 Identities=6% Similarity=0.083 Sum_probs=38.2
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEcc
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (430)
...++.+||+.+|++..-|-..|..|...|.|..+-+.......+++
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~ 81 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTE 81 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECc
Confidence 45899999999999999999999999999999876654444444443
No 328
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=57.52 E-value=68 Score=25.24 Aligned_cols=90 Identities=11% Similarity=0.140 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccchhhHHhH-----hCCChHHHHHHHHHhhhcCceeEeeeccCC----EEEEcc
Q 014143 330 IRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKE-----LNVPEKDVEQLLVSLILDNRIDGHIDQVNR----LLERGD 400 (430)
Q Consensus 330 l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~-----l~l~~~evE~~l~~lI~~g~i~g~IDq~~g----~v~~~~ 400 (430)
+......+.+......++.++. ....--.|.+. ++++..-+-..|.+|-.+|.|...-+..++ +..+++
T Consensus 10 ~~~~~~~l~~g~l~~~IL~lL~--~p~~GYei~~~l~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~ 87 (123)
T 3ri2_A 10 VSSMVLELRRGTLVMLVLSQLR--EPAYGYALVKSLADHGIPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTD 87 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECH
T ss_pred HHHHHHHHHhCcHHHHHHHHHc--CCCCHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECH
Confidence 3444455655555666666653 33333333333 588999999999999999999887654322 223333
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHh
Q 014143 401 RSKGMKKYTAIDKWNSQLRSLYQTVS 426 (430)
Q Consensus 401 ~~~~~~~~~~l~~w~~~v~~l~~~v~ 426 (430)
. -.+.+..|......+...|.
T Consensus 88 ~-----Gr~~l~~~~~~~~~~~~~i~ 108 (123)
T 3ri2_A 88 E-----GLRVLREVEAQWHVLCDGVG 108 (123)
T ss_dssp H-----HHHHHHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHHHHHHHH
Confidence 2 23555566555555554443
No 329
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=57.47 E-value=24 Score=26.12 Aligned_cols=44 Identities=16% Similarity=-0.007 Sum_probs=36.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
..+++.+||+.+|++..-|-..|..|...|.|...- |...++..
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~----g~y~l~~~ 85 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG----ERWVVTDA 85 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET----TEEEECTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC----CEEEECCC
Confidence 568999999999999999999999999999997532 55555544
No 330
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=56.86 E-value=21 Score=28.22 Aligned_cols=63 Identities=11% Similarity=0.056 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 335 ~~L~~~i~~~~l~~i~~~Y~~I-~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
..+++.++..-+..-..|=.++ +...||+.+|++..-|.+-+..|..+|.|..+ +..|+.+..
T Consensus 16 ~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~ 79 (125)
T 3neu_A 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK--RGMGSFVTS 79 (125)
T ss_dssp HHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECC
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe--cCCEEEEec
Confidence 3445555544444445677888 59999999999999999999999999988653 456666654
No 331
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=56.61 E-value=8.9 Score=28.03 Aligned_cols=40 Identities=8% Similarity=0.173 Sum_probs=35.2
Q ss_pred HHhcccccccchhhHHhHhCCChH-HHHHHHHHhhhcCcee
Q 014143 347 LKLIKPYTRIRIPFISKELNVPEK-DVEQLLVSLILDNRID 386 (430)
Q Consensus 347 ~~i~~~Y~~I~l~~lA~~l~l~~~-evE~~l~~lI~~g~i~ 386 (430)
+.+++--...+...||+.||++.. .|-..|..|-.+|.|.
T Consensus 17 L~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 17 CDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEE
Confidence 455555567899999999999999 9999999999999997
No 332
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=56.50 E-value=20 Score=28.53 Aligned_cols=63 Identities=10% Similarity=0.120 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 335 ~~L~~~i~~~~l~~i~~~Y~~I-~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
..+++.++..-+..-..|=.++ +...||+.+|+|..-|..-+..|..+|.|.. -+..|+.+..
T Consensus 14 ~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~--~~g~G~~V~~ 77 (126)
T 3by6_A 14 LQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRT--IPGKGTFITG 77 (126)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECS
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--ecCCeEEEcc
Confidence 3445555544444445677899 9999999999999999999999999999854 4566776654
No 333
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=56.48 E-value=43 Score=26.59 Aligned_cols=47 Identities=19% Similarity=0.104 Sum_probs=38.8
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 352 ~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
....++...||+.+|++..-|-..|.+|...|.|.-. +.+.+.+++.
T Consensus 19 ~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~---~~~~~~LT~~ 65 (142)
T 1on2_A 19 EKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLTSK 65 (142)
T ss_dssp HHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE---TTTEEEECHH
T ss_pred hcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe---eCceEEEchh
Confidence 3457999999999999999999999999999998654 3466777653
No 334
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=56.20 E-value=31 Score=28.75 Aligned_cols=44 Identities=9% Similarity=0.160 Sum_probs=36.2
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEE
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLL 396 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v 396 (430)
=..++...||+.+++|...+++.+.+|-..|.|...=-...|+.
T Consensus 26 ~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~~GGy~ 69 (162)
T 3k69_A 26 DSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQ 69 (162)
T ss_dssp TSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEE
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeE
Confidence 35699999999999999999999999999999876533333443
No 335
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=55.91 E-value=13 Score=25.16 Aligned_cols=41 Identities=29% Similarity=0.263 Sum_probs=33.3
Q ss_pred HHHhccc-ccccchhhHHhHhCCChHHHHHHHHHhhhcCcee
Q 014143 346 LLKLIKP-YTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 346 l~~i~~~-Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
++.+++. =--+.++..|+.+|++.++|-..|.+|=..|.|.
T Consensus 15 lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 15 LLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 3444433 2468899999999999999999999999999875
No 336
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=55.85 E-value=70 Score=24.84 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=32.9
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEee
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHI 389 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~I 389 (430)
...+++.+||+.+|++..-|-..|..|...|.+...-
T Consensus 54 ~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~ 90 (122)
T 1u2w_A 54 DEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRK 90 (122)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 3568999999999999999999999999999997653
No 337
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=54.03 E-value=19 Score=28.07 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=41.9
Q ss_pred HHHhcccccccchhhHHhHh--CCChHHHHHHHHHhhhcCceeEeeeccCCEEEEcc
Q 014143 346 LLKLIKPYTRIRIPFISKEL--NVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (430)
Q Consensus 346 l~~i~~~Y~~I~l~~lA~~l--~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (430)
|+.++.-..+++...||+.+ |++...|-+.|.+|...|.|... ..|+..+++
T Consensus 18 IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~---~rg~Y~LT~ 71 (111)
T 3b73_A 18 ILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL---ANGVYVITE 71 (111)
T ss_dssp HHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC---STTCEEECH
T ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec---CCceEEECc
Confidence 34444445689999999999 99999999999999999999874 556555553
No 338
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=53.64 E-value=31 Score=26.08 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=33.4
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeee
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 390 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~ID 390 (430)
..+++.+||+.+|++..-|-..|..|...|.+...-+
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQ 74 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4579999999999999999999999999999987644
No 339
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=53.53 E-value=17 Score=27.73 Aligned_cols=51 Identities=8% Similarity=0.034 Sum_probs=39.9
Q ss_pred Hhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEE
Q 014143 348 KLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (430)
Q Consensus 348 ~i~~~Y~~I-~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (430)
....|=.++ +...||+.+|++..-|..-+..|..+|.|...-.-..|+.+.
T Consensus 35 ~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~ 86 (102)
T 2b0l_A 35 EELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIK 86 (102)
T ss_dssp TSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEE
T ss_pred hhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEe
Confidence 455666777 999999999999999999999999999986543113465544
No 340
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=53.52 E-value=12 Score=29.86 Aligned_cols=58 Identities=7% Similarity=-0.019 Sum_probs=39.9
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccC-C-EEEEccCCccchHHHHHHHHH
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN-R-LLERGDRSKGMKKYTAIDKWN 415 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~-g-~v~~~~~~~~~~~~~~l~~w~ 415 (430)
-++.+.||+.+|+++..|...|.+++..|.|.=+-|..+ | +...++-.+ ++++|..+.
T Consensus 51 ~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~~~g~~~~~Ydl~p---l~~kL~~~~ 110 (128)
T 2vn2_A 51 FPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHTDEQGIRNEKYTLEP---LWEKLVHHL 110 (128)
T ss_dssp SCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC----------CEECHH---HHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEECCCCcEEEEEehHH---HHHHHHHHH
Confidence 389999999999999999999999999999865444332 3 223334333 567776654
No 341
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=53.30 E-value=27 Score=25.29 Aligned_cols=37 Identities=16% Similarity=0.397 Sum_probs=31.1
Q ss_pred hcccccccchhhHHhHhCCChHHHHHHHHHhhhcCce
Q 014143 349 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRI 385 (430)
Q Consensus 349 i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i 385 (430)
+-+.=+-++-..||+.+|++..+|.+.+-+|=.+|+|
T Consensus 28 LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI 64 (80)
T 2lnb_A 28 LTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKV 64 (80)
T ss_dssp HHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCc
Confidence 3334456788999999999999999999999888876
No 342
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=53.29 E-value=43 Score=27.86 Aligned_cols=65 Identities=20% Similarity=0.189 Sum_probs=50.9
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014143 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (430)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~ 210 (430)
+.|..+-++.|.+ .+.+|.++|.++++.....+. .. ..+++.-+++-..+||..+|+..+.+|..
T Consensus 58 rrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hK-----------kF-AKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 58 ESFARIQVRFAEL-KAIQEPDDARDYFQMARANCK-----------KF-AFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCT-----------TB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhH-----------HH-HHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 4555666677766 566999999999999987632 23 66777778888899999999999998864
No 343
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=52.73 E-value=63 Score=25.39 Aligned_cols=51 Identities=12% Similarity=0.051 Sum_probs=40.3
Q ss_pred HHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 347 ~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
..+.+.-..+++.+||+.+|++..-|-..|.+|...|.|.-. . +.+.+++.
T Consensus 23 ~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~--~--~~~~Lt~~ 73 (139)
T 2x4h_A 23 KRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKK--E--DGVWITNN 73 (139)
T ss_dssp HHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--T--TEEEECHH
T ss_pred HHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEec--C--CeEEEChh
Confidence 334445578999999999999999999999999999988642 2 66777653
No 344
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=52.59 E-value=85 Score=24.83 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 335 ~~L~~~i~~~~l~~i~~~Y~~I-~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
..+++.|+..-+.--..|=.++ +...||+.+|+|..-|..-+..|-.+|.|..+ +..|+.+..
T Consensus 17 ~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~--~g~G~~V~~ 80 (134)
T 4ham_A 17 EQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITV--KGKGTFIAN 80 (134)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECC
T ss_pred HHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE--cCcEEEEeC
Confidence 3455555555455556787888 78899999999999999999999999999654 556766644
No 345
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=52.53 E-value=14 Score=29.79 Aligned_cols=48 Identities=13% Similarity=0.219 Sum_probs=36.4
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC---EEEEcc
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (430)
...++...||+.++++..-|-..|.+|...|.|.-.-|..++ .|.+++
T Consensus 53 ~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~ 103 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTD 103 (149)
T ss_dssp SSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECS
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECH
Confidence 467899999999999999999999999999999866655554 566654
No 346
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=52.24 E-value=8.3 Score=29.30 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 336 DLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 336 ~L~~~i~~~~l~~i~~~Y~~I-~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
.+.+.++..-+.....|=.++ +...||+.+|++..-|..-+..|...|.|.. -+..|+.+..
T Consensus 15 ~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~--~~g~G~~v~~ 77 (102)
T 1v4r_A 15 DVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSS--RGALGTVVEK 77 (102)
T ss_dssp HHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEE--ETTTEEESCS
T ss_pred HHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--eCCCeEEEcc
Confidence 344444433333344556788 9999999999999999999999999999864 3444655443
No 347
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=51.97 E-value=23 Score=30.51 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=33.3
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEe
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~ 388 (430)
.+++..+||+.+|++..-|-..|.+|...|.|.+.
T Consensus 32 ~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 68999999999999999999999999999999876
No 348
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=51.30 E-value=29 Score=27.67 Aligned_cols=62 Identities=5% Similarity=-0.006 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 336 DLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 336 ~L~~~i~~~~l~~i~~~Y~~I-~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
.+++.++..-+..-..|=.++ +...||+.+|+|..-|..-+..|..+|.|.. -+..|+.+..
T Consensus 8 ~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~--~~g~G~~V~~ 70 (129)
T 2ek5_A 8 QIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYK--KRGIGMFVSA 70 (129)
T ss_dssp HHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEE--ETTTEEEECT
T ss_pred HHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE--ecCCEEEEec
Confidence 344444443333345677888 8999999999999999999999999999854 4556666543
No 349
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=51.21 E-value=20 Score=28.89 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=37.5
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC---EEEEcc
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (430)
...++..+||+.++++..-|-..|.+|...|.|.-..|..++ .+.+++
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~ 109 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTE 109 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECH
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECH
Confidence 457999999999999999999999999999999876655444 566554
No 350
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=49.81 E-value=13 Score=26.76 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=23.8
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHH
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVS 378 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~ 378 (430)
|-+.++..||..+|++.++||..+..
T Consensus 46 YL~~~l~eia~~l~~~~~eve~vL~~ 71 (76)
T 2k9l_A 46 FLSKSVEEISDVLRCSVEELEKVRQK 71 (76)
T ss_dssp TTCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 88999999999999999999987754
No 351
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=48.45 E-value=29 Score=28.47 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=39.3
Q ss_pred HHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeecc
Q 014143 341 VRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV 392 (430)
Q Consensus 341 i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~ 392 (430)
.|...|..+. -...+...||+.+|++..-|-..|..|...|.|..+-|..
T Consensus 59 ~R~~IL~~L~--~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr 108 (151)
T 3f6v_A 59 TRRRLVQLLT--SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGR 108 (151)
T ss_dssp HHHHHHHHGG--GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 3444444443 3568999999999999999999999999999998765433
No 352
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=47.63 E-value=11 Score=36.08 Aligned_cols=53 Identities=17% Similarity=0.205 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHH---HHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcee
Q 014143 333 YIEDLLKNVRTQV---LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 333 ~~~~L~~~i~~~~---l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
|..-+-+.++..| +++++. ...+|-.+||+.+|++..-|-..+.+|+.+|.|.
T Consensus 9 ~~~~~~~~~~~~~~~~il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~ 64 (380)
T 2hoe_A 9 HHHHMPKSVRAENISRILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVV 64 (380)
T ss_dssp -------------CCCSHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred ccccCchhHHHHHHHHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3333444455543 466667 8899999999999999999999999999999985
No 353
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=47.40 E-value=19 Score=26.04 Aligned_cols=35 Identities=11% Similarity=0.354 Sum_probs=31.8
Q ss_pred cccccchhhHHhHh-CCChHHHHHHHHHhhhcCcee
Q 014143 352 PYTRIRIPFISKEL-NVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 352 ~Y~~I~l~~lA~~l-~l~~~evE~~l~~lI~~g~i~ 386 (430)
+=+..-|.++++.+ +..+.+|.+.+..||.+|++.
T Consensus 18 ~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~le 53 (78)
T 1ucr_A 18 SKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVLE 53 (78)
T ss_dssp HSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred ccccchHHHHHHHccccCHHHHHHHHHHHHhcCceE
Confidence 45688899999999 999999999999999999984
No 354
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=47.06 E-value=18 Score=28.83 Aligned_cols=47 Identities=9% Similarity=0.150 Sum_probs=39.1
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeecc---CCEEEEcc
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV---NRLLERGD 400 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~---~g~v~~~~ 400 (430)
..++..+||+.++++..-|-..|.+|...|.|.-..|.. ...+.+++
T Consensus 53 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~ 102 (147)
T 1z91_A 53 ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTE 102 (147)
T ss_dssp SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECH
T ss_pred CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECH
Confidence 478999999999999999999999999999997666544 44566654
No 355
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=46.90 E-value=1.2e+02 Score=31.18 Aligned_cols=26 Identities=8% Similarity=-0.015 Sum_probs=21.9
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhh
Q 014143 140 LKLCKIWFDMGEYGRMSKILKELHKS 165 (430)
Q Consensus 140 ~~La~~~~~~g~~~~A~~~l~el~~~ 165 (430)
.+||+.+++.|+++.|.+.+..+...
T Consensus 685 ~~la~~al~~~~~~~A~~~y~~~~d~ 710 (814)
T 3mkq_A 685 RALGDASLQRFNFKLAIEAFTNAHDL 710 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHccCh
Confidence 47899999999999999988887554
No 356
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=46.72 E-value=11 Score=33.48 Aligned_cols=69 Identities=16% Similarity=0.063 Sum_probs=38.5
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCCccchHH----HHHHHHHHHHHHHHHHHh
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKY----TAIDKWNSQLRSLYQTVS 426 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~----~~l~~w~~~v~~l~~~v~ 426 (430)
-.++-.+||..+|++.+-+-+.+.++..+|.|. ...|.+.+.+++.-.... .-+..|+..+++|-...+
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d~~~L~~~a~~~~~~~~~~~~~~~~l~~~~~ 248 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRENILD----KKKNKIIVYNLGELKHLSEQTSYYSDPNSSSVDKLAAALD 248 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----ECSSEEEESCHHHHHHHHTSSCCCC---------------
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeE----eCCCEEEEecHHHHHHHHccCcccccCCchhHHHHHHhhc
Confidence 367889999999999999999999999998774 345677776543211111 114458888877766543
No 357
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=45.71 E-value=1e+02 Score=23.89 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=33.2
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeee
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 390 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~ID 390 (430)
...++.+||+.+|++..-+-..|..|...|.+...-+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 94 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4588999999999999999999999999999977544
No 358
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=45.37 E-value=25 Score=29.38 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=35.7
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC---EEEEcc
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (430)
.++..+||+.++++..-|-..|.+|...|.|.-.-|..++ .|.+++
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~ 134 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTP 134 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECH
Confidence 4999999999999999999999999999999766555444 455554
No 359
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=45.20 E-value=86 Score=29.92 Aligned_cols=67 Identities=9% Similarity=-0.010 Sum_probs=51.8
Q ss_pred hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014143 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (430)
Q Consensus 134 l~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~ 212 (430)
.++.+...++..++..|++.+|...+..+...-. +-=+.+...|+.+...|+...|...|+..+...
T Consensus 169 ~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P------------~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 169 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHP------------YREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3445566889999999999999998888865511 112467777889999999999999999886543
No 360
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=44.62 E-value=68 Score=24.51 Aligned_cols=46 Identities=11% Similarity=0.061 Sum_probs=36.2
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
..+++.++|+.+|++..-|-..|..|...|.+.-.- ..+.+..+..
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~--~~r~~~~~~~ 89 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDR--AGRSIVYSLY 89 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEE--ETTEEEEEES
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe--cCCEEEEEEc
Confidence 468999999999999999999999999999886533 3334444433
No 361
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=43.80 E-value=64 Score=21.43 Aligned_cols=50 Identities=10% Similarity=0.036 Sum_probs=35.8
Q ss_pred HHHHHHhcccccccchhhHHhHh-----CCChHHHHHHHHHhhhcCceeEeeeccCCEEE
Q 014143 343 TQVLLKLIKPYTRIRIPFISKEL-----NVPEKDVEQLLVSLILDNRIDGHIDQVNRLLE 397 (430)
Q Consensus 343 ~~~l~~i~~~Y~~I~l~~lA~~l-----~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~ 397 (430)
...|..++..-..++.++|++.+ +++..-|-..|-+ .|.+ ++..++|...
T Consensus 7 ~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~---lg~v--~~~~~~~~~~ 61 (64)
T 2p5k_A 7 HIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKE---LHLV--KVPTNNGSYK 61 (64)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHH---HTCE--EEEETTTEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHH---cCCE--EEecCCCcee
Confidence 33445555555689999999999 9999988888873 4666 5555666544
No 362
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=42.77 E-value=61 Score=25.00 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=32.6
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeee
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 390 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~ID 390 (430)
..++.+||+.+|++..-|-..|..|...|.+...-|
T Consensus 34 ~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~ 69 (118)
T 2jsc_A 34 VCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYE 69 (118)
T ss_dssp CCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEEC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEE
Confidence 478899999999999999999999999999987644
No 363
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=41.92 E-value=1.5e+02 Score=24.59 Aligned_cols=51 Identities=8% Similarity=0.147 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccC
Q 014143 112 FSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (430)
Q Consensus 112 ~~~~~~~~~~~~e~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~ 168 (430)
.+-....|..++.. .|-|.++-+..|++...+|+...|.++|......+..
T Consensus 76 ~d~aR~vy~~a~~~------hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 76 PDDARDYFQMARAN------CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp GGGCHHHHHHHHHH------CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 34456788888773 3445788889999999999999999999999988653
No 364
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=41.22 E-value=67 Score=30.71 Aligned_cols=53 Identities=17% Similarity=0.262 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014143 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (430)
..+++.+|+..+...+..+|-+ ..+..+++..+...|+..++++.|..+...+
T Consensus 183 ~~g~~~~a~~~l~~~~~~~P~~----E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 183 ACGRASAVIAELEALTFEHPYR----EPLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4567888888888888776632 5678899999999999999999999998876
No 365
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=40.44 E-value=39 Score=22.30 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=24.8
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhh
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~ 381 (430)
..-.+..+||+.+|+|+.-|...+.++..
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45678899999999999999988887654
No 366
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=39.81 E-value=38 Score=28.77 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=37.2
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
.++-.+||..+|++.+-+-+.+.+|-.+|.|. ...|.+.+.++
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d~ 211 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVK----LSRGKITILDS 211 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEESCH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----eCCCEEEEeCH
Confidence 67889999999999999999999999998874 34677888765
No 367
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=39.59 E-value=31 Score=29.82 Aligned_cols=47 Identities=9% Similarity=-0.095 Sum_probs=37.8
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC---EEEEcc
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 400 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g---~v~~~~ 400 (430)
..++...||+.++++..-+-..|-+|...|.|.-.-|..++ .|.+++
T Consensus 61 ~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~ 110 (207)
T 2fxa_A 61 NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTE 110 (207)
T ss_dssp TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECH
Confidence 47999999999999999999999999999999887776665 555553
No 368
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=39.59 E-value=70 Score=23.80 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=33.8
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHH
Q 014143 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM 191 (430)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l 191 (430)
..+.-|+-+++.|+|.+|.-++.++...+.++ . -...+.+|+.+.+-
T Consensus 55 ~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~----~---i~ki~~fyl~ec~k 101 (106)
T 2vkj_A 55 SLIAEGKDLFETANYGEALVFFEKALNLSDNE----E---IKKIASFYLEECRK 101 (106)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH----H---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHccccCH----H---HHHHHHHHHHHHHH
Confidence 34456667888999999999999999887542 1 23456677776553
No 369
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=39.35 E-value=37 Score=32.60 Aligned_cols=41 Identities=7% Similarity=0.190 Sum_probs=36.4
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcee
Q 014143 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 346 l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
+++++.....+|-.+||+.+|++..-|-..+.+|+..|.|.
T Consensus 21 il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~ 61 (406)
T 1z6r_A 21 VYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQ 61 (406)
T ss_dssp HHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 45556667899999999999999999999999999999984
No 370
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=39.30 E-value=72 Score=24.22 Aligned_cols=61 Identities=10% Similarity=0.010 Sum_probs=39.3
Q ss_pred hHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCC----EEEEccCCccchHHHHHHHHHHHHHHHHHHH
Q 014143 360 FISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR----LLERGDRSKGMKKYTAIDKWNSQLRSLYQTV 425 (430)
Q Consensus 360 ~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g----~v~~~~~~~~~~~~~~l~~w~~~v~~l~~~v 425 (430)
.|++.++++..-+-..|.+|..+|.|...-+..+| +..+++. -.+.+..|......+...+
T Consensus 31 ~l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~-----G~~~l~~~~~~~~~~~~~i 95 (108)
T 3l7w_A 31 TIKLIASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDS-----GEKHLVYLTKEWSVYKMTI 95 (108)
T ss_dssp HHTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHH-----HHHHHHHHHHHHHHHHHHH
Confidence 34445789999999999999999999988765444 2233332 2344555555444444443
No 371
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=39.22 E-value=60 Score=28.98 Aligned_cols=67 Identities=15% Similarity=0.093 Sum_probs=41.8
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCCcc-chHHHHHHHHHHHHHHH
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKG-MKKYTAIDKWNSQLRSL 421 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~-~~~~~~l~~w~~~v~~l 421 (430)
...++.++||+.+|+|..-+-..|.+|...|.|... ...+.+..+..-.. ......+.-|.+.-.++
T Consensus 164 ~~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~--~r~~~~~LT~~G~~l~~~~~~~~~w~~aq~~~ 231 (244)
T 2wte_A 164 TKGTGITELAKMLDKSEKTLINKIAELKKFGILTQK--GKDRKVELNELGLNVIKLNKSVIESSKSSEEL 231 (244)
T ss_dssp HTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTTEEEECHHHHHHHHHTC------------
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCccEEEECHHHHHHHHHHhcccccHHHHHHH
Confidence 357999999999999999999999999999999775 45667777643211 11233444566554443
No 372
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=37.96 E-value=2e+02 Score=24.87 Aligned_cols=70 Identities=11% Similarity=0.140 Sum_probs=53.2
Q ss_pred hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014143 130 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (430)
Q Consensus 130 ~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~ 209 (430)
.|+-.++++-++.|+.. ..++..++.+++.-+...-. +..+..+|..-+.++-..|++.+|...|..+.
T Consensus 74 kND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~I----------G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI 142 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGI----------GTKLSLFYEEFSKLLENAQFFLEAKVLLELGA 142 (202)
T ss_dssp TTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTS----------STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCC----------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46667788878888776 34446788888888887632 23456788888889999999999999999886
Q ss_pred h
Q 014143 210 A 210 (430)
Q Consensus 210 ~ 210 (430)
.
T Consensus 143 ~ 143 (202)
T 3esl_A 143 E 143 (202)
T ss_dssp H
T ss_pred H
Confidence 4
No 373
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=37.82 E-value=26 Score=27.66 Aligned_cols=33 Identities=6% Similarity=0.149 Sum_probs=30.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCc-ee
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNR-ID 386 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~-i~ 386 (430)
.-.+++.||+.-|++...++..|.+++..|. ++
T Consensus 31 ~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~~l~ 64 (122)
T 3iuo_A 31 RKVALDDIAVSHGLDFPELLSEVETIVYSGTRIN 64 (122)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHHHcCCccC
Confidence 7889999999999999999999999999995 54
No 374
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=37.36 E-value=7 Score=35.83 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=0.0
Q ss_pred cccchhhHHhHh-CCChHHHHHHHHHhhhcCceeEeeec
Q 014143 354 TRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQ 391 (430)
Q Consensus 354 ~~I~l~~lA~~l-~l~~~evE~~l~~lI~~g~i~g~IDq 391 (430)
.=|++..|++.+ ++++++|...|-.|+.+|.|.-.||.
T Consensus 223 ~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTiDd 261 (270)
T 2pi2_A 223 EGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDD 261 (270)
T ss_dssp ---------------------------------------
T ss_pred cCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEeccccc
Confidence 568888999998 69999999999999999999999985
No 375
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=37.31 E-value=60 Score=26.04 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=39.7
Q ss_pred ccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCE---EEEcc
Q 014143 351 KPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL---LERGD 400 (430)
Q Consensus 351 ~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~---v~~~~ 400 (430)
.+-..++.+.||+.++++..-+-..|.+|...|.|.=.-|..++. |.+++
T Consensus 47 ~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~ 99 (147)
T 4b8x_A 47 SKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITD 99 (147)
T ss_dssp SGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEECH
T ss_pred CCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECH
Confidence 345679999999999999999999999999999999888877764 44443
No 376
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=37.27 E-value=1e+02 Score=24.61 Aligned_cols=42 Identities=7% Similarity=0.110 Sum_probs=29.0
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEE
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLL 396 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v 396 (430)
..++..+||+.++++..-+-..|-+|...|.|. +.|..++..
T Consensus 51 ~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr-~~~~~DrR~ 92 (148)
T 4fx0_A 51 IDLTMSELAARIGVERTTLTRNLEVMRRDGLVR-VMAGADARC 92 (148)
T ss_dssp ---CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC----------
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE-eeCCCCCCe
Confidence 569999999999999999999999999999994 456555543
No 377
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=37.12 E-value=31 Score=23.63 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=26.1
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhh
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~ 381 (430)
+.-.|..+||+.+|+|..-|...+.+++.
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 57899999999999999999999988764
No 378
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=36.89 E-value=44 Score=24.81 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=26.3
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhc
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILD 382 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~ 382 (430)
+.-.+..+||+.+|++..-|...+.++...
T Consensus 40 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 40 SEGLTNKQIADRMFLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 677899999999999999999998887653
No 379
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=36.69 E-value=58 Score=27.55 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=37.5
Q ss_pred HHHHHHHHhcccc-cccchhhHHhHhCCChHHHHHHHHHhhhcCc-eeE
Q 014143 341 VRTQVLLKLIKPY-TRIRIPFISKELNVPEKDVEQLLVSLILDNR-IDG 387 (430)
Q Consensus 341 i~~~~l~~i~~~Y-~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~-i~g 387 (430)
-|...|+.++..- ..++.++||+.+|+|..-|..-|..|-..|. |.+
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 3445566666543 4599999999999999999999999988888 754
No 380
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=36.65 E-value=44 Score=32.46 Aligned_cols=41 Identities=24% Similarity=0.222 Sum_probs=35.9
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcee
Q 014143 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 346 l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
+++++.....+|-.+||+.+|++..-|-..+.+|+.+|.|.
T Consensus 44 il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~ 84 (429)
T 1z05_A 44 VYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIH 84 (429)
T ss_dssp HHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 44455556889999999999999999999999999999884
No 381
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=36.56 E-value=71 Score=27.34 Aligned_cols=44 Identities=7% Similarity=0.027 Sum_probs=36.9
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
-.++-.+||..+|++.+-+-+.+.++..+|.|. ...|.|.+.++
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d~ 222 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSERMLA----LDGKRIKIIDC 222 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE----EETTEEEESCH
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEe----eCCCEEEEeCH
Confidence 467889999999999999999999999998874 33567777764
No 382
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=36.36 E-value=91 Score=22.02 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=35.3
Q ss_pred HHHHhcccc--cccchhhHHhHh-----CCChHHHHHHHHHhhhcCceeE
Q 014143 345 VLLKLIKPY--TRIRIPFISKEL-----NVPEKDVEQLLVSLILDNRIDG 387 (430)
Q Consensus 345 ~l~~i~~~Y--~~I~l~~lA~~l-----~l~~~evE~~l~~lI~~g~i~g 387 (430)
.|+.++... ..++..+|++.+ +++..-|-..|..|...|.|.-
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE
Confidence 344444332 579999999999 9999999999999999999974
No 383
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=35.90 E-value=93 Score=27.61 Aligned_cols=61 Identities=13% Similarity=0.161 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEcc
Q 014143 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (430)
Q Consensus 335 ~~L~~~i~~~~l~~i~~~Y~~I-~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (430)
..+.+.++..-. . ..|=.++ +-..||+.+|++..-|.+-+..|..+|.|.- +..|+.+...
T Consensus 17 ~~i~~~l~~~I~-~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~---~g~Gt~V~~~ 78 (248)
T 3f8m_A 17 QVVRAELDRMLD-G-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER---RGRTTVVARP 78 (248)
T ss_dssp HHHHHHHHHHHH-H-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE---ETTEEEECCC
T ss_pred HHHHHHHHHHHh-C-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe---CCCEEEEccC
Confidence 345555554443 4 7777889 8999999999999999999999999999976 7788776543
No 384
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=35.70 E-value=1.2e+02 Score=26.06 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=43.1
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 346 l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
|..+.+.-..++..+||+.++++..-|-..|.+|...|.|.-.-| +.|..++.
T Consensus 11 I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~---~~i~LT~~ 63 (214)
T 3hrs_A 11 LYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK---AGYLLTDL 63 (214)
T ss_dssp HHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT---TEEEECHH
T ss_pred HHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecC---CCeEECHH
Confidence 344455567899999999999999999999999999999865433 67888764
No 385
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=35.34 E-value=58 Score=28.73 Aligned_cols=63 Identities=11% Similarity=0.055 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEE
Q 014143 333 YIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLE 397 (430)
Q Consensus 333 ~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~ 397 (430)
..+.+++.|+..-+.....|=.+++...||+.||+|..-|-.-|..|-.+|.+.-+ +..|+++
T Consensus 27 ~~~~v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~--~~~G~~V 89 (237)
T 3c7j_A 27 ARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVE--THKGAVV 89 (237)
T ss_dssp HHHHHHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE--TTTEEEE
T ss_pred cHHHHHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--CCCceEE
Confidence 34557777776666666788899999999999999999999999999999998643 3445543
No 386
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=34.57 E-value=57 Score=27.32 Aligned_cols=43 Identities=9% Similarity=0.037 Sum_probs=36.7
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
.++-.+||..+|++.+-|-+.+.+|-.+|.|. ...|.|.+.++
T Consensus 146 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d~ 188 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTKVIGELAREGYIR----SGYGKIQLLDL 188 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEESCH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----eCCCEEEEeCH
Confidence 57889999999999999999999999999875 33577888764
No 387
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=34.48 E-value=51 Score=24.06 Aligned_cols=30 Identities=10% Similarity=0.063 Sum_probs=26.1
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhc
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILD 382 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~ 382 (430)
+.-.+..+||+.+|++..-|...+.++...
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTHVSNILSK 71 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 567899999999999999999998887643
No 388
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=34.32 E-value=57 Score=23.37 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=25.9
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhc
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILD 382 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~ 382 (430)
+.-.+..+||+.+|++..-|...+.++...
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVHVKHMLKK 63 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 577899999999999999999988876543
No 389
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=34.10 E-value=1.2e+02 Score=24.22 Aligned_cols=45 Identities=18% Similarity=0.036 Sum_probs=36.4
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
..++...||+.+|++..-|-..|.+|...|.|.-+- ++.+.+++.
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~---~~~~~lT~~ 97 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIP---WRGVFLTAE 97 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEET---TTEEEECHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEec---CCceEEChh
Confidence 568899999999999999999999999999876432 355666643
No 390
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=34.04 E-value=26 Score=27.78 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 336 DLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 336 ~L~~~i~~~~l~~i~~~Y~~I-~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
.+++.++..-+..-..|=.++ +...||+.+|++..-|.+-+..|..+|.|..+ +..|+.+..
T Consensus 15 ~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~~~G~~V~~ 77 (126)
T 3ic7_A 15 QIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNK--RGIGFFVAS 77 (126)
T ss_dssp HHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEE--TTTEEEECT
T ss_pred HHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE--cCCccEEcc
Confidence 344445444444445677899 89999999999999999999999999998654 556665543
No 391
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=33.93 E-value=52 Score=27.81 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=37.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
-.++-.+||..+|++.+-+-+.+.++-.+|.|. ...|.+.+.++
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d~ 205 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEEGVVR----LGPGTVEVREA 205 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEESCH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEeCH
Confidence 567899999999999999999999999999884 34577888765
No 392
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=33.47 E-value=2.5e+02 Score=25.86 Aligned_cols=86 Identities=10% Similarity=-0.064 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhh-----cCHHHHHHHHHHHHhhhccCCCchhHHHHHH
Q 014143 152 YGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET-----KNNKKLKQLYQKALAIKSAIPHPRIMGIIRE 226 (430)
Q Consensus 152 ~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~-----~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~ 226 (430)
...|...+++.... |+ .-.--..|.....+|... ||..+|+.++++|..++..- .+. .+.
T Consensus 179 l~~A~a~lerAleL--------DP--~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~---~id--~~v 243 (301)
T 3u64_A 179 VHAAVMMLERACDL--------WP--SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH---DPD--HHI 243 (301)
T ss_dssp HHHHHHHHHHHHHH--------CT--THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT---CSH--HHH
T ss_pred HHHHHHHHHHHHHh--------CC--CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC---Cch--HHH
Confidence 44566677777666 21 112223555556677774 99999999999999875421 122 223
Q ss_pred hhhHhhhh-hhcHHHHHHHHHHHHHhh
Q 014143 227 CGGKMHMA-ERQWADAATDFFEAFKNY 252 (430)
Q Consensus 227 ~~g~~~~~-~~~y~~A~~~f~ea~~~~ 252 (430)
..|..++. .+++..|.+++-++....
T Consensus 244 ~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 244 TYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 33565555 599999999999997644
No 393
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=33.45 E-value=62 Score=22.13 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=24.4
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhh
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~ 381 (430)
+.-.+..+||+.+|++..-|...+.++..
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45569999999999999999988887653
No 394
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=33.39 E-value=48 Score=27.77 Aligned_cols=42 Identities=14% Similarity=0.078 Sum_probs=34.6
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEcc
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (430)
.++-.+||..+|++.+-+-+.+.++-.+|.|. ...|.|.+.+
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d 205 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVH----VKGKTMVVFG 205 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEEET
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEEe
Confidence 57889999999999999999999999999874 2345566554
No 395
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=33.33 E-value=1e+02 Score=31.30 Aligned_cols=81 Identities=12% Similarity=0.189 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchh-hHHhHhCCChHHHHH
Q 014143 296 LAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIP-FISKELNVPEKDVEQ 374 (430)
Q Consensus 296 ~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~-~lA~~l~l~~~evE~ 374 (430)
..+++-.+.|+. .|+++.+.+..--..||-+...+..-......-.+..+.+-|..+.+. .-.+-+.-+++++|.
T Consensus 486 ~~iKe~fk~Fn~----~Fee~~~~q~~w~VpD~~LR~~Lr~~i~~~v~paY~~F~~r~~~~~~~k~~~KyiKytpe~le~ 561 (571)
T 2pft_A 486 QMIKERFKGFND----GLEELCKIQKVWAIPDTEQRDKIRQAQKDIVKETYGAFLHRYGSVPFTKNPEKYIKYRVEQVGD 561 (571)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSCHHHHCCCCHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHhCCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCCCCccccCHHHHHH
Confidence 456777777776 688777766543346888765443333333334455555556666664 355667899999999
Q ss_pred HHHHhh
Q 014143 375 LLVSLI 380 (430)
Q Consensus 375 ~l~~lI 380 (430)
.|.++.
T Consensus 562 ~L~~LF 567 (571)
T 2pft_A 562 MIDRLF 567 (571)
T ss_dssp HHHTSS
T ss_pred HHHHHh
Confidence 998864
No 396
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=32.82 E-value=2.2e+02 Score=23.93 Aligned_cols=48 Identities=19% Similarity=0.171 Sum_probs=29.0
Q ss_pred HHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 014143 144 KIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (430)
Q Consensus 144 ~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a 208 (430)
.+-++.|+++.|.++..++.. + .+|.- .++..+..||+.-|..+|.++
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~~---------~-----~~Wk~---Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLND---------S-----ITWER---LIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHCC---------H-----HHHHH---HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHhCC---------H-----HHHHH---HHHHHHHcCChHHHHHHHHHh
Confidence 345678999999998877621 1 23332 234455666666666666654
No 397
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=32.77 E-value=1e+02 Score=22.72 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=31.9
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeee
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 390 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~ID 390 (430)
...++.+||+.+|++..-+-..+..|-.. .+..+-+
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~ 75 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQ 75 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEe
Confidence 46899999999999999999999999998 8876644
No 398
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=32.44 E-value=73 Score=27.17 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=36.6
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
.++-.+||..+|++.+-+-+.+.++..+|.|. ...|.+.+.++
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d~ 219 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIR----LEGKSVLISDS 219 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEESCH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE----ecCCEEEEcCH
Confidence 57889999999999999999999999998774 34577887765
No 399
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=32.44 E-value=1.1e+02 Score=27.00 Aligned_cols=62 Identities=11% Similarity=0.160 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 336 DLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 336 ~L~~~i~~~~l~~i~~~Y~~I-~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
.+.+.++..-...-..|=.++ +...||+.+|++..-|.+-+..|..+|.|..+ +..|+.+..
T Consensus 14 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~ 76 (243)
T 2wv0_A 14 QIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRL--KGRGTFVSK 76 (243)
T ss_dssp HHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--TTSCEEECC
T ss_pred HHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe--CCCeEEEeC
Confidence 344444443333345666888 89999999999999999999999999998643 566776643
No 400
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=32.40 E-value=59 Score=24.55 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=24.8
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhh
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLIL 381 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~ 381 (430)
...|+.+||+.+|+|.+-|...+.+++.
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlk 65 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALR 65 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6789999999999999999988887764
No 401
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=32.37 E-value=1.4e+02 Score=31.01 Aligned_cols=31 Identities=10% Similarity=0.009 Sum_probs=25.2
Q ss_pred hHHHHhHHHHHHH--HHhccHHHHHHHHHHHHh
Q 014143 134 LWFKTNLKLCKIW--FDMGEYGRMSKILKELHK 164 (430)
Q Consensus 134 l~~r~~~~La~~~--~~~g~~~~A~~~l~el~~ 164 (430)
-.+++.+++..++ +..|+|+.|++.+.++.-
T Consensus 534 ~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~l 566 (661)
T 2qx5_A 534 EICMLLLNISSIRELYFNKQWQETLSQMELLDL 566 (661)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 3456677888887 788999999999999863
No 402
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=32.15 E-value=65 Score=22.41 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=26.0
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhc
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILD 382 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~ 382 (430)
+.-.+..+||+.+|++..-|...+.++...
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRANVMAK 58 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 677899999999999999999988876653
No 403
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=31.68 E-value=1.3e+02 Score=28.20 Aligned_cols=63 Identities=16% Similarity=0.267 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 014143 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI 97 (430)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v 97 (430)
++++++.+.++++.+|+. .|..+.+.-+....-..|..+++.+++.+|.+. .-.-+++...+.
T Consensus 254 l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--Dp~r~~~y~d~~ 316 (331)
T 3dss_A 254 LQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLR 316 (331)
T ss_dssp HHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--CGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--CcchhhHHHHHH
Confidence 689999999999998864 787666554444444467788888888888775 333455544443
No 404
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=31.41 E-value=53 Score=28.02 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=37.0
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCC
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (430)
-.++-.+||..+|++.+-+-+.+.+|-.+|.|. ...|.+.+.+++
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d~~ 221 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIH----LDGREISILDRE 221 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEE----ESSSCEEESCST
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEE----ecCCEEEEeCHH
Confidence 467889999999999999999999999998874 345667776654
No 405
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=31.27 E-value=95 Score=24.40 Aligned_cols=60 Identities=12% Similarity=0.130 Sum_probs=45.7
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhcccccccchhh-HHhHhCCChHHHHHHHHHhhhcCce
Q 014143 325 MDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPF-ISKELNVPEKDVEQLLVSLILDNRI 385 (430)
Q Consensus 325 ~~D~~l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~-lA~~l~l~~~evE~~l~~lI~~g~i 385 (430)
..|..|.++...|-++|. .-+..+.++|+++|+++ +..++|++.-+....+-.+...|.+
T Consensus 17 l~d~el~~rar~LA~kIv-~pv~el~~~hTTvSVERtVlr~mGidgvda~~iVd~~~e~gLL 77 (121)
T 3kp1_E 17 LSDEELQTRFWEMAEKIV-DPLLDLGKKNTTPSIERSVLLRMGFSSLEAKAIVDKTMDRGLM 77 (121)
T ss_dssp CCHHHHHHHHHHHHHHHH-HHHHHHHHHEECHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCG
T ss_pred CCHHHHHHHHHHHHHHHH-HHHHHHHHcCCccHHHHHHHHHhCCCccchHHHHHHHHHcccc
Confidence 356677777777777775 34567889999999986 7889999988888766666666665
No 406
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=30.88 E-value=55 Score=27.49 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=34.5
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEcc
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (430)
.++-.+||..+|++.+-+-+.+.+|-.+|.|. ...|.+.+.+
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d 208 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS----AHGKTIVVYG 208 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEEEC
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE----eCCCEEEEEe
Confidence 67889999999999999999999999998775 2345555544
No 407
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=30.85 E-value=21 Score=28.15 Aligned_cols=51 Identities=16% Similarity=0.303 Sum_probs=32.9
Q ss_pred HHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeec
Q 014143 341 VRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391 (430)
Q Consensus 341 i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq 391 (430)
.+...|.++..|=-+=.|++|+=.=-=-...||..|..|...|.|.++||.
T Consensus 38 ~r~~iL~qiLtpeAreRL~rI~lVKPEkA~~VE~~LI~lAq~Gqi~~kIte 88 (118)
T 2cru_A 38 MRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSE 88 (118)
T ss_dssp HHHHHHHHHBCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCCSCBCH
T ss_pred HHHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 345556777777544444444321000135899999999999999998863
No 408
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=30.80 E-value=68 Score=23.37 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=25.6
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHhhh
Q 014143 352 PYTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (430)
Q Consensus 352 ~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~ 381 (430)
.+.-.+...||+.+|++..-|...+.++..
T Consensus 50 ~~~g~s~~eIA~~lgis~~tV~~~l~ra~~ 79 (92)
T 3hug_A 50 YYRGWSTAQIATDLGIAEGTVKSRLHYAVR 79 (92)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 367789999999999999999988887653
No 409
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=30.67 E-value=82 Score=27.14 Aligned_cols=63 Identities=11% Similarity=0.145 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 335 EDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 335 ~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
+.+++.|+..-+.--..|=.+++-..||+.+|+|..-|-.-|..|-.+|.+.-+ +..|+.+..
T Consensus 15 ~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~--~~~G~~V~~ 77 (218)
T 3sxy_A 15 TKVYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVV--PRVGFFVTD 77 (218)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE--TTTEEEECC
T ss_pred HHHHHHHHHHHHhCCCCCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--CCCceEEcC
Confidence 345555655555555678899999999999999999999999999999999654 455665543
No 410
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=30.45 E-value=1.2e+02 Score=31.27 Aligned_cols=83 Identities=10% Similarity=0.053 Sum_probs=49.1
Q ss_pred HHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc------cCCC
Q 014143 144 KIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS------AIPH 217 (430)
Q Consensus 144 ~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~------~~~~ 217 (430)
.+.++.|++++|.++.+.+ ++ . ...-..+++++..+|+..|..+|.++..... ...+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~----------~~----~---~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~ 722 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE----------SA----E---MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNN 722 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC----------CC----H---HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred ehhhhcCCHHHHHHHHHhh----------Cc----H---hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCC
Confidence 4567789999999876433 12 1 2334456778889999999998887642211 1111
Q ss_pred chhHHHHHHhhhHhhhhhhcHHHHHHHHHH
Q 014143 218 PRIMGIIRECGGKMHMAERQWADAATDFFE 247 (430)
Q Consensus 218 ~~~~~~~~~~~g~~~~~~~~y~~A~~~f~e 247 (430)
+... ...+.+...++++..|...|+.
T Consensus 723 ~~~~----~~~~~~a~~~~~~~~A~~~~~~ 748 (814)
T 3mkq_A 723 KEGL----VTLAKDAETTGKFNLAFNAYWI 748 (814)
T ss_dssp HHHH----HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHcCchHHHHHHHHH
Confidence 1111 1224555567777777766654
No 411
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=30.29 E-value=75 Score=26.12 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=37.7
Q ss_pred HHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcee
Q 014143 344 QVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 344 ~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
..++++.+ .-+.+..+||+.+|+|-..+...|-.+=.+|.+.
T Consensus 14 ~~ILE~Lk-~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~ 55 (165)
T 2vxz_A 14 RDILALLA-DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVT 55 (165)
T ss_dssp HHHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHHHHH-hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceE
Confidence 35677777 8999999999999999999999999999999885
No 412
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=30.02 E-value=66 Score=27.53 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcC
Q 014143 338 LKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDN 383 (430)
Q Consensus 338 ~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g 383 (430)
.+.-|.+.|+++++-...++.++||+.|++|++-+..-+..|=..+
T Consensus 9 ~k~eR~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~ 54 (190)
T 4a0z_A 9 KKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPE 54 (190)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcc
Confidence 3445677788888888999999999999999988877776664443
No 413
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=29.99 E-value=77 Score=26.33 Aligned_cols=43 Identities=16% Similarity=0.082 Sum_probs=36.1
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
.++-.+||+.+|++.+-|-+.+.+|..+|.|. ...|.+.+.++
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d~ 181 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIA----TAYRRVYLLDL 181 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEE----EETTEEEECCH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEeCH
Confidence 47788999999999999999999999998874 33567777764
No 414
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=29.73 E-value=1.2e+02 Score=26.03 Aligned_cols=63 Identities=14% Similarity=0.158 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 335 EDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 335 ~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
+.+++.|+..-+.--..|=.+++-..||+.||+|-.-|-.-|..|-.+|.|.-+ +..|+.+..
T Consensus 19 ~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~--~~~G~~V~~ 81 (222)
T 3ihu_A 19 DTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQ--RHRGAVIRR 81 (222)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--STTCEEECC
T ss_pred HHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--cCCCeEEec
Confidence 455666666655666788899999999999999999999999999999999754 445665543
No 415
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=29.59 E-value=75 Score=27.63 Aligned_cols=46 Identities=13% Similarity=0.111 Sum_probs=36.8
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCCc
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSK 403 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~ 403 (430)
-.++-.+||..+|++.+-|-+.+.+|..+|.|. ...|.|.+.+++.
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~----~~~~~i~I~d~~~ 237 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLGDLREKKMIS----IHKKKITVHKPVT 237 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEECC---
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEE----EcCCEEEECCHHH
Confidence 367889999999999999999999999998875 3367788877643
No 416
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=29.52 E-value=40 Score=27.03 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=23.7
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHH
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVS 378 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~ 378 (430)
|-+.+++.||..++++.++||..+..
T Consensus 37 YL~~~l~eia~~l~~~~~eve~vL~~ 62 (130)
T 2k9m_A 37 FLSKSVEEISDVLRCSVEELEKVRQK 62 (130)
T ss_dssp SBSSCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 88999999999999999999987754
No 417
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=29.13 E-value=44 Score=23.22 Aligned_cols=28 Identities=7% Similarity=0.089 Sum_probs=24.5
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhh
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLIL 381 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~ 381 (430)
.-.|..+||+.+|+|..-|...+.+++.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~ 56 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALR 56 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6789999999999999999988877653
No 418
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=28.61 E-value=20 Score=29.74 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=35.4
Q ss_pred hcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeE
Q 014143 349 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (430)
Q Consensus 349 i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g 387 (430)
.+.|-.+++...||+.+|+|..-|-.-+.+|..+|.|.+
T Consensus 21 ~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 21 ELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp HHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred HHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 556788899999999999999999999999999999975
No 419
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=28.42 E-value=1.9e+02 Score=21.80 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=34.0
Q ss_pred ccccchhhHHhHhC----CChHHHHHHHHHhhhcCceeEeee
Q 014143 353 YTRIRIPFISKELN----VPEKDVEQLLVSLILDNRIDGHID 390 (430)
Q Consensus 353 Y~~I~l~~lA~~l~----l~~~evE~~l~~lI~~g~i~g~ID 390 (430)
...++..+||+.++ ++..-|-..|-+|...|.|.-.-|
T Consensus 22 ~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~ 63 (123)
T 1okr_A 22 KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKD 63 (123)
T ss_dssp HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEec
Confidence 45799999999999 789999999999999999976655
No 420
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=28.40 E-value=1.8e+02 Score=27.68 Aligned_cols=61 Identities=15% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 183 e~~l~~~~l~~~~~d~~ka~~~l~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
.++...+..+...|++..|...+++|...+ |. ...+...|.++...|++.+|...|..++.
T Consensus 278 ~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-----~s--~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 278 IIYQIKAVSALVKGKTDESYQAINTGIDLE-----MS--WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----CC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----CC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
No 421
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=27.79 E-value=38 Score=20.76 Aligned_cols=27 Identities=7% Similarity=0.172 Sum_probs=22.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhh
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLI 380 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI 380 (430)
.-.+...||+.+|++..-|..++.+.-
T Consensus 20 ~g~s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 20 LNVSLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHCST
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhhHH
Confidence 457899999999999999998886543
No 422
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=27.77 E-value=3.4e+02 Score=24.42 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=33.0
Q ss_pred eecccchh--hHHHHHHhhcccCCC-CHHHHHHHHHHhhcCCcc----chhhhHHHHHHHH
Q 014143 8 LFSDEFTV--SRVLCSILEKGLVET-DPEGALAGFAEVVAMEPE----KAEWGFKALKQTV 61 (430)
Q Consensus 8 ~~~~~~~~--~~~~~~~~ak~~~~~-~~~~Ai~~~~~ii~~~~~----~~~~~~k~l~~l~ 61 (430)
.|.|-|+. ++....|.||-..+. .+++..+..+++++.+++ ....-..++++.+
T Consensus 20 ~~~~~~~~m~~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvI 80 (261)
T 3ubw_A 20 YFQGAMGSMDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVI 80 (261)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhcc
Confidence 47788875 789999999977666 499999999999987653 1222344555544
No 423
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=27.42 E-value=30 Score=25.29 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhhcCceeEeeec
Q 014143 370 KDVEQLLVSLILDNRIDGHIDQ 391 (430)
Q Consensus 370 ~evE~~l~~lI~~g~i~g~IDq 391 (430)
..||..|.+|...|.|.|+||.
T Consensus 37 ~~VE~~Li~lAq~Gqi~~ki~e 58 (80)
T 1eij_A 37 EQIELQLIQLAQMGRVRSKITD 58 (80)
T ss_dssp HHHHHHHHHHHHCCSSCCCCCH
T ss_pred HHHHHHHHHHHHcCCCCCCcCH
Confidence 5899999999999999998874
No 424
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=27.42 E-value=1.2e+02 Score=22.73 Aligned_cols=65 Identities=12% Similarity=0.015 Sum_probs=46.5
Q ss_pred HHHHhcccccccchhhHHh-HhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCCccchHHHHHHHH
Q 014143 345 VLLKLIKPYTRIRIPFISK-ELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKW 414 (430)
Q Consensus 345 ~l~~i~~~Y~~I~l~~lA~-~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~~~~~~~~~l~~w 414 (430)
+|+..+.-...+|.++||+ .++++..-+-+-|-.|+.+|.+. -|.. + |..+.... ....+...-|
T Consensus 20 siL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe--~~~~-D-l~LT~~G~-~~l~~a~~~W 85 (95)
T 1bja_A 20 TILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE--KSGD-G-LIITGEAQ-DIISNAATLY 85 (95)
T ss_dssp HHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE--EETT-E-EEECHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee--cCCC-C-eeeCHhHH-HHHHHHHHHH
Confidence 4444443334899999999 99999999999999999999998 3333 3 66665432 2345566668
No 425
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=27.13 E-value=1.1e+02 Score=21.94 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=26.0
Q ss_pred hcccccccchhhHHhHhC-----------CChHHHHHHHHHhhhcCcee
Q 014143 349 LIKPYTRIRIPFISKELN-----------VPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 349 i~~~Y~~I~l~~lA~~l~-----------l~~~evE~~l~~lI~~g~i~ 386 (430)
+...+.++++++|...+. ++.++++..|.+++.+|++.
T Consensus 16 MLtN~~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e~kL~ 64 (74)
T 1ldd_A 16 MLTNLGAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLK 64 (74)
T ss_dssp HHHHHCSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHhcCCCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhCCeEE
Confidence 334456666666655542 24478899999999999885
No 426
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=27.01 E-value=75 Score=27.35 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=36.8
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccCC
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~~ 402 (430)
-.++-.+||+.+|++.+-+-+.+.++..+|.|. ...|.|.+.+++
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~----~~~~~i~I~d~~ 229 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDNGLIE----LHRKEILIPDAQ 229 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCE----EETTEEEESCGG
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEE----ecCCEEEEeChH
Confidence 367889999999999999999999999999875 235667776543
No 427
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=26.96 E-value=53 Score=22.18 Aligned_cols=29 Identities=3% Similarity=-0.083 Sum_probs=24.6
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhh
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~ 381 (430)
+.-.+...||+.+|+|+.-|...+.++..
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~~~ra~~ 57 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSRVARARD 57 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46689999999999999999888877653
No 428
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=26.92 E-value=96 Score=27.29 Aligned_cols=63 Identities=5% Similarity=-0.000 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEcc
Q 014143 336 DLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (430)
Q Consensus 336 ~L~~~i~~~~l~~i~~~Y~~I-~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (430)
.+.+.++..-...-..|=.++ +-..||+.+|++..-|.+-+..|..+|.|..+ +..|+.+...
T Consensus 13 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~~ 76 (236)
T 3edp_A 13 VIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRK--NGVGLYVQPK 76 (236)
T ss_dssp HHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECCC
T ss_pred HHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE--CCceEEEccC
Confidence 444444443333345677899 89999999999999999999999999998654 5667766543
No 429
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=26.78 E-value=99 Score=26.49 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=34.7
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
.++-.+||..+|++.+-+-+.+.+|-.+| | .. ..|.|.+.++
T Consensus 178 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g-i--~~--~~~~i~I~d~ 219 (237)
T 3fx3_A 178 PYDKMLIAGRLGMKPESLSRAFSRLKAAG-V--TV--KRNHAEIEDI 219 (237)
T ss_dssp CSCTHHHHHHTTCCHHHHHHHHHHHGGGT-E--EC--CTTEEEESCH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCC-e--Ee--eCCEEEEcCH
Confidence 34568999999999999999999999999 5 33 4578888765
No 430
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=26.11 E-value=1.2e+02 Score=22.48 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=32.4
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEe
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~ 388 (430)
.-|+..+||+.++++...|-..|-+|...|.|.-.
T Consensus 35 ~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 35 KGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp TCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 47999999999999999999999999999999843
No 431
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=26.02 E-value=58 Score=24.38 Aligned_cols=33 Identities=24% Similarity=0.231 Sum_probs=23.7
Q ss_pred HHHHHhcccccccchhhHHhHhCCChHHHHHHHH
Q 014143 344 QVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLV 377 (430)
Q Consensus 344 ~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~ 377 (430)
..|+.++.... +++.++|+.+|+|..-|-..|.
T Consensus 10 ~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 10 IKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHc
Confidence 34445544433 8999999999999887776653
No 432
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=25.89 E-value=1.5e+02 Score=25.92 Aligned_cols=61 Identities=10% Similarity=0.114 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 337 LLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 337 L~~~i~~~~l~~i~~~Y~~I-~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
+.+.++..-...-..|=.++ +-..||+.+|++..-|.+-+..|..+|.|.- -+..|+.+..
T Consensus 10 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~--~~g~G~~V~~ 71 (239)
T 3bwg_A 10 IATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQ--VRGSGIFVRK 71 (239)
T ss_dssp HHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECC
T ss_pred HHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE--eCCceEEEec
Confidence 34444433333345677889 8999999999999999999999999999964 3566666543
No 433
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=25.62 E-value=2.4e+02 Score=24.04 Aligned_cols=38 Identities=24% Similarity=0.222 Sum_probs=34.9
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeee
Q 014143 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 390 (430)
Q Consensus 353 Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~ID 390 (430)
....+...||+.+|++..-+-..|..|...|.|...-+
T Consensus 26 ~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~ 63 (202)
T 2p4w_A 26 KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVE 63 (202)
T ss_dssp HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEee
Confidence 35689999999999999999999999999999988766
No 434
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=25.55 E-value=91 Score=22.85 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=24.9
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhh
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLIL 381 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~ 381 (430)
.-.+...||+.+|+++.-|+..+.++..
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6678999999999999999999988754
No 435
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=25.39 E-value=32 Score=25.14 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhhcCceeEeeec
Q 014143 370 KDVEQLLVSLILDNRIDGHIDQ 391 (430)
Q Consensus 370 ~evE~~l~~lI~~g~i~g~IDq 391 (430)
..||..|.+|...|.|.++||.
T Consensus 35 ~~VE~~Li~lAq~Gqi~~ki~e 56 (81)
T 2fh0_A 35 QAVETYLKKLIATNNVTHKITE 56 (81)
T ss_dssp HHHHHHHHHHHHHTCCSCCBCH
T ss_pred HHHHHHHHHHHHcCCCCCCcCH
Confidence 5899999999999999998873
No 436
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=25.24 E-value=2.9e+02 Score=22.87 Aligned_cols=79 Identities=18% Similarity=0.292 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHH---hhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHH
Q 014143 116 REFYQTTLKALEE---AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMY 192 (430)
Q Consensus 116 ~~~~~~~~e~l~~---~~~~kl~~r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~ 192 (430)
..+++.|...+.. -.|+-.++++-++.|+.. +++.+++.-+...-. +..+..+|..-+.++
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~~I----------G~~~AlfY~~wA~~l 106 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQGI----------GVSLAQFYISWAEEY 106 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHTTS----------STTBHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCc----------chhhHHHHHHHHHHH
Confidence 3445555444332 245567777777777663 335566777666522 234567888888889
Q ss_pred HhhcCHHHHHHHHHHHHh
Q 014143 193 TETKNNKKLKQLYQKALA 210 (430)
Q Consensus 193 ~~~~d~~ka~~~l~~a~~ 210 (430)
-..|++.+|...|..+..
T Consensus 107 E~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 107 EARENFRKADAIFQEGIQ 124 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999998865
No 437
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=25.23 E-value=1.5e+02 Score=22.36 Aligned_cols=43 Identities=7% Similarity=0.111 Sum_probs=34.1
Q ss_pred HHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHH
Q 014143 300 NLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRT 343 (430)
Q Consensus 300 ~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~ 343 (430)
.+.+.|. +|-.......+..+..+..|+.|...++.|.+++..
T Consensus 55 ~IG~~fg-RDHsTV~ha~~ki~~~~~~d~~l~~~i~~l~~~l~~ 97 (101)
T 3pvv_A 55 KIGQAFG-RDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQ 97 (101)
T ss_dssp HHHHHTT-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHC-CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHh
Confidence 5666777 887777777777777788999999999988887764
No 438
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.05 E-value=1.3e+02 Score=30.07 Aligned_cols=66 Identities=11% Similarity=0.079 Sum_probs=51.6
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014143 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (430)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~ 209 (430)
.+...|...|+..+.|+.|.+++.... ......+ ....+.++....+++...++|.+|...+..|-
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~s-----n~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTDVS-----SSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCC-----HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344477888999999999999999875 2211111 25678888899999999999999999998874
No 439
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=24.81 E-value=57 Score=23.60 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=25.2
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhh
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLIL 381 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~ 381 (430)
.-.|+..||+.+|+|+.-|...+.+++.
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999888764
No 440
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=24.76 E-value=4e+02 Score=24.25 Aligned_cols=129 Identities=9% Similarity=0.100 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHhhhhhhhh--------------
Q 014143 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYK--EMMDAYREMLTYIKSAVTRNY-------------- 92 (430)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~--~l~e~~~~l~~~~~~~~~k~~-------------- 92 (430)
..+++++++.+.++++.++.+ +.+-.+-+-++...|+++ +.++.+..++..- +....+-
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkn----y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKN----HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGC
T ss_pred cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Q ss_pred ----HHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHH---------------HHhHHHHHHHHHhccHH
Q 014143 93 ----SEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF---------------KTNLKLCKIWFDMGEYG 153 (430)
Q Consensus 93 ----~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~kl~~---------------r~~~~La~~~~~~g~~~ 153 (430)
..+.+.-+-..+...|+ ....=.....++.........-.-+ ....-||.++.+.|+++
T Consensus 198 ~~~~~~eEl~~~~~aI~~~p~--n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKCPQ--NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHCSS--CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred hhhhHHHHHHHHHHHHHhCCC--CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Q ss_pred HHHHHHHHHHh
Q 014143 154 RMSKILKELHK 164 (430)
Q Consensus 154 ~A~~~l~el~~ 164 (430)
+|.+++..+..
T Consensus 276 ~A~~~~~~l~~ 286 (306)
T 3dra_A 276 ESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
No 441
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=24.75 E-value=5.8e+02 Score=26.19 Aligned_cols=96 Identities=7% Similarity=-0.024 Sum_probs=58.3
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHhhhccCC
Q 014143 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET-KNNKKLKQLYQKALAIKSAIP 216 (430)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~-~d~~ka~~~l~~a~~~~~~~~ 216 (430)
+-+..+++....|+.+.|..++......+.. ....+++.-+.+.... +|..+|+.++..+.+.-..
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-----------~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~-- 502 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-----------VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT-- 502 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-----------SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----------CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC--
Confidence 3446667777778888999988888766211 1123444444554444 4589999999988654211
Q ss_pred CchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHH
Q 014143 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (430)
Q Consensus 217 ~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (430)
+|. ++..-+.+....++...|...|-.+..
T Consensus 503 ~~~----~w~~y~~fe~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 503 DGE----YINKYLDFLIYVNEESQVKSLFESSID 532 (679)
T ss_dssp CHH----HHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred chH----HHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 232 233334445556777777777776654
No 442
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=24.71 E-value=76 Score=24.69 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=29.7
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCceeE
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g 387 (430)
-.+..++|..+|++...+..++..+...|.+..
T Consensus 20 p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~ 52 (121)
T 2pjp_A 20 PWWVRDLAKETGTDEQAMRLTLRQAAQQGIITA 52 (121)
T ss_dssp CEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 457889999999999999999999999998865
No 443
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=24.57 E-value=1.2e+02 Score=27.24 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 335 ~~L~~~i~~~~l~~i~~~Y~~I-~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
..+.+.++..-...-..|=.++ +-..||+.+|++..-|.+-+..|..+|.|.. -+..|+.+..
T Consensus 32 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~--~~g~G~~V~~ 95 (272)
T 3eet_A 32 LRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEG--RSGSGTYVRE 95 (272)
T ss_dssp HHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--CCC--EEECC
T ss_pred HHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--ecCceEEEec
Confidence 3444444444334445677889 8999999999999999999999999999853 2344555443
No 444
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=24.48 E-value=2.5e+02 Score=23.90 Aligned_cols=56 Identities=13% Similarity=-0.022 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHhhcCCcc--------------chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014143 28 VETDPEGALAGFAEVVAMEPE--------------KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (430)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~--------------~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (430)
+..|+..|+..+.+|++..-+ +.+...=-..-++.+|.+.|+-++++.+|...-+.
T Consensus 74 klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 74 KKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
No 445
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=23.95 E-value=1.2e+02 Score=20.46 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=33.9
Q ss_pred HHhcccc-cccchhhHHhHhCCChHHHHHHHHHhhhcCceeE
Q 014143 347 LKLIKPY-TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (430)
Q Consensus 347 ~~i~~~Y-~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g 387 (430)
+..+.+. .-++-.++|..+|+|.+....-+-++.++|.+.-
T Consensus 9 Lall~s~~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRK 50 (68)
T 3i71_A 9 LALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRK 50 (68)
T ss_dssp HHHHHHCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhh
Confidence 3344443 5688999999999999999999999999999854
No 446
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=23.78 E-value=3.3e+02 Score=29.97 Aligned_cols=124 Identities=13% Similarity=-0.007 Sum_probs=71.9
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcc-----------hhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 014143 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDD-----------QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 207 (430)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d-----------~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~ 207 (430)
+.-+|..++..|++++|..+.++.-........... ......+..+|...+.++...+-+..+-.+...
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 468999999999999999988765332211100000 000123456788888888888888887777666
Q ss_pred HHhhhccCCCchhHHHHHHhhhHhhhhhhcHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q 014143 208 ALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVL 269 (430)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~l 269 (430)
|...... .++.+...++..-=..++.-++|.+|+.-.... .....+.++|+.++.
T Consensus 925 Ai~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~------pd~~~r~~cLr~LV~ 979 (1139)
T 4fhn_B 925 ADASKET-DDEDLSIAITHETLKTACAAGKFDAAHVALMVL------STTPLKKSCLLDFVN 979 (1139)
T ss_dssp HHHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH------HHSSSCHHHHHHHHH
T ss_pred HHHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC------CCHHHHHHHHHHHHH
Confidence 6543221 234444444332233455667777776555432 122345678877653
No 447
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=23.72 E-value=1.4e+02 Score=23.06 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=41.4
Q ss_pred cccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 350 IKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 350 ~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
+..|+-||..-+++++++...-+...|-.|-..|.|.-..-+....|+..
T Consensus 54 Vpk~KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYTr 103 (108)
T 3u5c_Z 54 VPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYTR 103 (108)
T ss_dssp CSSCSSBSHHHHHHTTCCCTTHHHHHHHHHSSSSSCEEEECCSSCCEEEC
T ss_pred ccCCeEEeHHHhhhhhhhhHHHHHHHHHHHHHCCCEEEEecCCCEEEEec
Confidence 44599999999999999999999999999999999987664444445543
No 448
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=23.66 E-value=1.6e+02 Score=29.79 Aligned_cols=79 Identities=10% Similarity=0.276 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHhHHhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHH
Q 014143 297 AMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLL 376 (430)
Q Consensus 297 ~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l 376 (430)
.+++-.+.|+. .|+++.+.+..--..||.+...+..-......-.++.+.+-|.. .-..-.+-+.-+++++|..|
T Consensus 485 ~iKe~fk~FN~----~Fee~~~~q~~w~vpD~~LR~~Lr~~i~~~v~P~Y~~F~~ry~~-~~k~~~KyiKytpe~le~~l 559 (564)
T 2b1e_A 485 QIKEKFRKFNE----GFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKD-SFKNPRKHIKYTPDELTTVL 559 (564)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGG-GSSSGGGTCSCCHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHhcCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCCCCcccCCHHHHHHHH
Confidence 34444444443 35555555433233588886544433333333445555555665 23445666888999999999
Q ss_pred HHhh
Q 014143 377 VSLI 380 (430)
Q Consensus 377 ~~lI 380 (430)
.++.
T Consensus 560 ~~L~ 563 (564)
T 2b1e_A 560 NQLV 563 (564)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9875
No 449
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=23.44 E-value=1.3e+02 Score=26.37 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEE
Q 014143 335 EDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (430)
Q Consensus 335 ~~L~~~i~~~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (430)
+.+++.|+..-+.--.+|=.+++-..||+.||+|-.-|-.-|..|-.+|.|.-+ +..|+.+.
T Consensus 31 ~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~--~~~G~~V~ 92 (239)
T 2hs5_A 31 TRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHE--LNRGVFVR 92 (239)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--CCCeeEEe
Confidence 445556655555555678889999999999999999999999999999998643 44565544
No 450
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=23.35 E-value=2.1e+02 Score=20.55 Aligned_cols=48 Identities=15% Similarity=0.052 Sum_probs=40.0
Q ss_pred ccccccchhhHHhHhCC-ChHHHHHHHHHhhhcCceeEeeeccCCEEEEcc
Q 014143 351 KPYTRIRIPFISKELNV-PEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (430)
Q Consensus 351 ~~Y~~I~l~~lA~~l~l-~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~ 400 (430)
......++++|++..++ +.+++-.-|.=+-.+++|. +++.+|.+.+.-
T Consensus 20 ~~~~~~s~~el~k~t~l~~d~el~lAiGWLaREdKI~--~~~~~~~l~v~l 68 (77)
T 2l01_A 20 NGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV--TSEVEGEIFVKL 68 (77)
T ss_dssp TTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHHTTCEE--EEEETTEEEEEE
T ss_pred hcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhhcCceE--EEeeCCEEEEEe
Confidence 33478999999999999 9999999888888999874 677788777753
No 451
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=23.22 E-value=3.3e+02 Score=22.82 Aligned_cols=49 Identities=22% Similarity=0.220 Sum_probs=34.3
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 014143 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (430)
Q Consensus 140 ~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a 208 (430)
.+||+.-+..|+++-|.+.++.++.. + .+. -+|...||..+.+..-+.|
T Consensus 38 k~Lg~~AL~~gn~~lAe~cy~~~~D~--------~------~L~------~Ly~~tg~~e~L~kla~iA 86 (177)
T 3mkq_B 38 ERLIQEALAQGNASLAEMIYQTQHSF--------D------KLS------FLYLVTGDVNKLSKMQNIA 86 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTTCH--------H------HHH------HHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHhCCH--------H------HHH------HHHHHhCCHHHHHHHHHHH
Confidence 48899999999999999999888665 2 111 2456677777766554433
No 452
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=23.04 E-value=66 Score=27.55 Aligned_cols=44 Identities=16% Similarity=0.083 Sum_probs=36.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
-.++-.+||..+|++.+-+-+.+.+|-.+|.|. ...|.+.+.++
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d~ 217 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLKRLEAHNILE----VSPRSVTLLDL 217 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----ECSSCEEESCH
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE----ecCCEEEEeCH
Confidence 367889999999999999999999999998875 33567777654
No 453
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.60 E-value=61 Score=23.00 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=24.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhh
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLIL 381 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~ 381 (430)
+.-.+..||+.+||+.+.|..|..++=.
T Consensus 31 s~eei~~LA~~lgL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 31 NSDELLKISIAVGLPQEFVKEWFEQRKV 58 (71)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHhhccc
Confidence 6667999999999999999999998753
No 454
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=22.33 E-value=3.5e+02 Score=24.85 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=50.0
Q ss_pred HHhHHHHHHHHHh-----ccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHh
Q 014143 137 KTNLKLCKIWFDM-----GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE-TKNNKKLKQLYQKALA 210 (430)
Q Consensus 137 r~~~~La~~~~~~-----g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~-~~d~~ka~~~l~~a~~ 210 (430)
....-||.+|... |+.++|...+++......+ ..+..+..-++.+.. .+|+..++.+++++..
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~-----------~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA-----------HDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT-----------TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC-----------CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 3455788898884 9999999999999998532 113444455666666 5999999999999987
Q ss_pred hhcc
Q 014143 211 IKSA 214 (430)
Q Consensus 211 ~~~~ 214 (430)
....
T Consensus 269 a~p~ 272 (301)
T 3u64_A 269 IDPE 272 (301)
T ss_dssp CCGG
T ss_pred CCCC
Confidence 6443
No 455
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=22.16 E-value=2.7e+02 Score=21.34 Aligned_cols=35 Identities=23% Similarity=0.119 Sum_probs=28.0
Q ss_pred cchhhHHhHh------CCChHHHHHHHHHhhhcCceeEeee
Q 014143 356 IRIPFISKEL------NVPEKDVEQLLVSLILDNRIDGHID 390 (430)
Q Consensus 356 I~l~~lA~~l------~l~~~evE~~l~~lI~~g~i~g~ID 390 (430)
...-.|++.+ +++..-+-..|.+|-.+|.|...-+
T Consensus 25 ~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~ 65 (117)
T 4esf_A 25 TYGYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNIEKK 65 (117)
T ss_dssp BCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEee
Confidence 4444555554 7899999999999999999998765
No 456
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=22.09 E-value=93 Score=29.69 Aligned_cols=59 Identities=14% Similarity=0.032 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHH----Hh-cccccccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeee
Q 014143 332 NYIEDLLKNVRTQVLL----KL-IKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 390 (430)
Q Consensus 332 ~~~~~L~~~i~~~~l~----~i-~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~ID 390 (430)
.+...+...++.+.+- -. -++|.+.+...+|+++|++...++..+.+|-..|..-++..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (403)
T 3ez9_A 15 LRASALLKAMSQDIEDQRKEFNQTEYYQTFTRNAVAKLPKLSRRIVDQAIKEMEEDGYQFNKKQ 78 (403)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHTTTCCCCCBCHHHHHHSTTCCHHHHHHHHHHHHHTSCCCCEEE
T ss_pred HHHHHHHHHHHHHHhccccCcCccccCCCcCHHHHHHHhCCCHHHHHHHHHHHhhcCCCCCcCC
Confidence 3444444445544444 22 35689999999999999999999999998888888877643
No 457
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=21.93 E-value=2.3e+02 Score=27.78 Aligned_cols=73 Identities=15% Similarity=0.087 Sum_probs=56.8
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhccCCCCCcchhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014143 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (430)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~~l~el~~~~~~~~~~~d~~~~~~~~e~~l~~~~l~~~~~d~~ka~~~l~~a~~~ 211 (430)
-+...|-++|++.|+..-|..++..+.....-+ . .+.......+.+.-...+++...++|.+|...+..|-..
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p-~-~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLA-H-FNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCS-C-GGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCc-C-hhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 445578899999999999999999888753211 1 122235678899999999999999999999999988544
No 458
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=21.89 E-value=7.8e+02 Score=26.61 Aligned_cols=97 Identities=12% Similarity=0.147 Sum_probs=55.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHH-HHHhhhhhhHHHHh
Q 014143 61 VKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKA-LEEAKNERLWFKTN 139 (430)
Q Consensus 61 ~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~~e~-l~~~~~~kl~~r~~ 139 (430)
.++|+..|++++++.+=-.--+.|.-.-...++..+|.++++.+.+.. .+.++..-+. -...-+.+ ...+-
T Consensus 77 Skvyy~Lg~~~~al~yaL~aG~~fd~~~~seYv~tiis~cid~y~~~~-------~~~~~~~~~~~~~~~id~r-L~~Lv 148 (963)
T 4ady_A 77 SKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEA-------SKQYTKDEQFYTKDIIDPK-LTSIF 148 (963)
T ss_dssp HHHHHHHTCHHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHHHHHHHHH-------HHHHHHCTTGGGSSCSCHH-HHHHH
T ss_pred HHHheeccchHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHHHHHH-------hhccccccccccccccCHH-HHHHH
Confidence 599999999999998754433444222356778888888888764311 0000000000 00000111 11333
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhh
Q 014143 140 LKLCKIWFDMGEYGRMSKILKELHKS 165 (430)
Q Consensus 140 ~~La~~~~~~g~~~~A~~~l~el~~~ 165 (430)
.++.....+.|.+.+|..++-|++..
T Consensus 149 ~~iv~~cl~hnae~~AvdLalE~erL 174 (963)
T 4ady_A 149 ERMIEKCLKASELKLALGIALEGYRL 174 (963)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhH
Confidence 46667777888888888887777654
No 459
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=21.89 E-value=71 Score=27.11 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=36.1
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeecc-CCEEEEccC
Q 014143 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV-NRLLERGDR 401 (430)
Q Consensus 354 ~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~-~g~v~~~~~ 401 (430)
-.++-.+||+.+|++.+-+-+.+.++..+|.| ... .|.+.+.++
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I----~~~~~~~i~i~d~ 210 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKMGIL----ERVNQRTLLLKDL 210 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSE----EESSSSEEEESCH
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCE----EEcCCCEEEEcCH
Confidence 36788999999999999999999999999876 343 567777654
No 460
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=21.66 E-value=67 Score=27.35 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=29.4
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCcee
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
.++-.+||..+|++.+-+-+.+.+|..+|.|.
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~ 194 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSLIKEGYIS 194 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 47889999999999999999999999998874
No 461
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=21.61 E-value=1.4e+02 Score=25.77 Aligned_cols=62 Identities=11% Similarity=0.020 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEE
Q 014143 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (430)
Q Consensus 335 ~~L~~~i~~~~l~~i~~~Y~~I-~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~ 398 (430)
+.+++.|+..-+..-..|=.++ +-..||+.+|+|-.-|-.-|..|..+|.|.- -+..|+.+.
T Consensus 10 ~~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~--~~g~G~~V~ 72 (239)
T 1hw1_A 10 GFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTI--QHGKPTKVN 72 (239)
T ss_dssp HHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE--ecCCCcEee
Confidence 3445555544444445778999 7999999999999999999999999999864 344566554
No 462
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=21.40 E-value=1.4e+02 Score=24.15 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=42.9
Q ss_pred cccc-cccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 350 IKPY-TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 350 ~~~Y-~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
+..| +-||...|+++|+++..-+...|..|...|.|.-..-+....|+..
T Consensus 57 Vpk~gKlITpsvlseRlkI~gSLARkaLreL~~kGlIk~V~kh~~q~IYTr 107 (143)
T 2xzm_8 57 PSKVGKVLTVSTVVEKLKVNGSLARQLMRTMADRKLVEKVAKNGNQWVYSV 107 (143)
T ss_dssp CTTSCSEECHHHHHHHHCBCHHHHHHHHHHHHHTTSEEEEEEETTEEEEEE
T ss_pred hcccceeecHHHHHHHhcchHHHHHHHHHHHHHCCCEEEEecCCCeEEEec
Confidence 4458 9999999999999999999999999999999987766665555554
No 463
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=21.35 E-value=70 Score=27.24 Aligned_cols=43 Identities=9% Similarity=0.090 Sum_probs=34.6
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
.++-.+||..+|++.+-+-+.+.+|-.+|.|. ...|.|.+.++
T Consensus 187 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d~ 229 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQADGLLH----ARGKTVVLYGT 229 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEEEC-
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE----ECCCEEEEeeC
Confidence 47889999999999999999999999998875 23466666543
No 464
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=21.03 E-value=1.5e+02 Score=19.52 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=27.7
Q ss_pred chhhHHhHhCCChHHHHHHHHHhhhcCceeEeeeccCCEEEEc
Q 014143 357 RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (430)
Q Consensus 357 ~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g~IDq~~g~v~~~ 399 (430)
-|.+||+.++=+++.+-+++..=.- -.|.|| +|.+.+.
T Consensus 13 Nf~~Ia~~L~R~p~hv~ky~~~ELG---t~g~id--~~rlii~ 50 (52)
T 1k8b_A 13 NFRELAKAVNRDEEFFAKYLLKETG---SAGNLE--GGRLILQ 50 (52)
T ss_dssp CHHHHHHHHHTCHHHHHHHHHHHHS---SEEEEE--TTEEEEE
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHhC---CCeeec--CCEEEEe
Confidence 4789999999999988877664221 257888 6666654
No 465
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=20.99 E-value=1.2e+02 Score=24.07 Aligned_cols=30 Identities=10% Similarity=-0.001 Sum_probs=25.9
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHhhh
Q 014143 352 PYTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (430)
Q Consensus 352 ~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~ 381 (430)
.+.-.+...||+.+|+|+.-|...+.++..
T Consensus 121 ~~~g~s~~EIA~~lgis~~tV~~~~~ra~~ 150 (164)
T 3mzy_A 121 LIRGYSYREIATILSKNLKSIDNTIQRIRK 150 (164)
T ss_dssp HTTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567889999999999999999988887653
No 466
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=20.90 E-value=1.4e+02 Score=25.27 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=30.2
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCceeE
Q 014143 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~g 387 (430)
..|+.+||+.+|++..-|-..|..|-..|.|..
T Consensus 24 ~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~ 56 (196)
T 3k2z_A 24 PPSVREIARRFRITPRGALLHLIALEKKGYIER 56 (196)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEC
T ss_pred CCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEe
Confidence 489999999999998899999999999999854
No 467
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=20.79 E-value=1.3e+02 Score=25.87 Aligned_cols=43 Identities=9% Similarity=0.097 Sum_probs=36.1
Q ss_pred ccchhhHHhHhCCCh-HHHHHHHHHhhhcCceeEeeeccCCEEEEccC
Q 014143 355 RIRIPFISKELNVPE-KDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (430)
Q Consensus 355 ~I~l~~lA~~l~l~~-~evE~~l~~lI~~g~i~g~IDq~~g~v~~~~~ 401 (430)
.++-.+||..+|++. +-+-+.+.+|-.+|.|. ...|.|.+.++
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~----~~~~~i~I~d~ 212 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIV----YKNSCFYVQNL 212 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEE----EETTEEEESCH
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEE----ecCCEEEEeCH
Confidence 577899999999999 79999999999998764 33577888765
No 468
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=20.44 E-value=1.1e+02 Score=28.31 Aligned_cols=43 Identities=9% Similarity=-0.058 Sum_probs=35.8
Q ss_pred HHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcee
Q 014143 344 QVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (430)
Q Consensus 344 ~~l~~i~~~Y~~I~l~~lA~~l~l~~~evE~~l~~lI~~g~i~ 386 (430)
..|+.++..-..++.++||+.+++|..-|.+.|..|-..|.+-
T Consensus 8 ~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i 50 (321)
T 1bia_A 8 LKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDV 50 (321)
T ss_dssp HHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcE
Confidence 3455565556789999999999999999999999998888763
No 469
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=20.29 E-value=5.3e+02 Score=24.04 Aligned_cols=26 Identities=15% Similarity=0.367 Sum_probs=19.9
Q ss_pred CchhHHHHHHhhhHhhhhhhcHHHHHHHHH
Q 014143 217 HPRIMGIIRECGGKMHMAERQWADAATDFF 246 (430)
Q Consensus 217 ~~~~~~~~~~~~g~~~~~~~~y~~A~~~f~ 246 (430)
||.+. ..-|.+++.+++|.+|..+|.
T Consensus 135 dp~LH----~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 135 DPELH----HVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp CHHHH----HHHHHHHHHTTCHHHHHHHHT
T ss_pred CHHHH----HHHHHHHHccCCHHHHHHHHH
Confidence 56554 344788888999999999986
Done!