Query 014144
Match_columns 430
No_of_seqs 65 out of 67
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 06:15:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014144.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014144hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p8ia1 d.58.55.1 (A:1-115) Pu 16.2 23 0.0017 28.6 1.2 19 380-398 67-85 (115)
2 d1g2ha_ a.4.1.12 (A:) Transcri 15.6 23 0.0017 24.9 1.0 18 95-112 44-61 (61)
3 d1vd6a1 c.1.18.3 (A:8-224) Put 9.7 71 0.0052 25.1 2.4 22 381-404 168-189 (217)
4 d1vp2a_ c.51.4.1 (A:) Putative 9.5 42 0.0031 28.1 0.9 11 242-252 170-180 (189)
5 d1ql3a_ a.3.1.1 (A:) Cytochrom 9.0 47 0.0034 25.0 0.9 20 372-391 79-98 (99)
6 d3dhxa1 d.58.18.13 (A:2-100) M 6.9 1.8E+02 0.013 21.4 3.5 25 378-402 74-98 (99)
7 d3c2ca_ a.3.1.1 (A:) Cytochrom 6.8 87 0.0064 22.6 1.6 16 375-390 95-110 (112)
8 d1ycca_ a.3.1.1 (A:) Mitochond 6.4 92 0.0067 23.6 1.6 18 374-391 89-106 (108)
9 d1lfma_ a.3.1.1 (A:) Mitochond 6.3 1.1E+02 0.008 21.3 1.9 18 374-391 84-101 (103)
10 d1c6sa_ a.3.1.1 (A:) Cytochrom 6.1 3.9E+02 0.028 17.9 5.0 24 368-391 57-80 (87)
No 1
>d2p8ia1 d.58.55.1 (A:1-115) Putative dioxygenase BxeB0224 {Burkholderia xenovorans [TaxId: 36873]}
Probab=16.25 E-value=23 Score=28.55 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=16.6
Q ss_pred HHHHHHHHhhcCCCceEEE
Q 014144 380 KRQALVTYLENNRAGITVF 398 (430)
Q Consensus 380 kRQAlVtYLq~N~~GITvf 398 (430)
.-.++|.+|+-||||.||+
T Consensus 67 ~F~~vv~WL~~nRg~LsVl 85 (115)
T d2p8ia1 67 QFADLVGWLTLNHGALDIF 85 (115)
T ss_dssp HHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHHhCCCceEE
Confidence 3457899999999999997
No 2
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=15.59 E-value=23 Score=24.91 Aligned_cols=18 Identities=17% Similarity=0.449 Sum_probs=15.0
Q ss_pred HHHHHHhhhhhhhcccce
Q 014144 95 IISFLSLSSWSRKYGLNR 112 (430)
Q Consensus 95 avsf~cLS~~~rkyGLRr 112 (430)
.|+--+|.+.++|||++|
T Consensus 44 gisr~tL~rKlkk~gi~k 61 (61)
T d1g2ha_ 44 GVSHTAIANKLKQYGIGK 61 (61)
T ss_dssp TSCTHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHhCCCC
Confidence 456678999999999976
No 3
>d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]}
Probab=9.66 E-value=71 Score=25.11 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=18.4
Q ss_pred HHHHHHHhhcCCCceEEEEeeeeh
Q 014144 381 RQALVTYLENNRAGITVFGFMMDR 404 (430)
Q Consensus 381 RQAlVtYLq~N~~GITvfGf~lDR 404 (430)
.+++|..+.++ |+.||.|++|-
T Consensus 168 ~~~~v~~~~~~--g~~v~~wTvn~ 189 (217)
T d1vd6a1 168 TEEAVAGWRKR--GLFVVAWTVNE 189 (217)
T ss_dssp CHHHHHHHHHT--TCEEEEECCCC
T ss_pred HHHHHHHHHHC--CCEEEEECCCC
Confidence 46789999876 99999999964
No 4
>d1vp2a_ c.51.4.1 (A:) Putative inosine/xanthosine triphosphate pyrophosphatase TM0159 {Thermotoga maritima [TaxId: 2336]}
Probab=9.50 E-value=42 Score=28.12 Aligned_cols=11 Identities=55% Similarity=0.621 Sum_probs=8.8
Q ss_pred hhhhhhHHHHH
Q 014144 242 IISHRYRAFIL 252 (430)
Q Consensus 242 ~ISHRfR~Fil 252 (430)
+||||.|.+--
T Consensus 170 ~iSHR~~A~~k 180 (189)
T d1vp2a_ 170 KISHRSKAFRK 180 (189)
T ss_dssp HHSHHHHHHHH
T ss_pred hcCHHHHHHHH
Confidence 58999998753
No 5
>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans [TaxId: 266]}
Probab=8.96 E-value=47 Score=25.01 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=15.8
Q ss_pred CccchhHHHHHHHHHHhhcC
Q 014144 372 YPQTVSYQKRQALVTYLENN 391 (430)
Q Consensus 372 ~~~~~SfqkRQAlVtYLq~N 391 (430)
+....+=+.|++++.||+..
T Consensus 79 ~~gl~~~~d~~dliaYLks~ 98 (99)
T d1ql3a_ 79 FAGLPKIEDRANLIAYLEGQ 98 (99)
T ss_dssp CCCCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHhhc
Confidence 43455788999999999875
No 6
>d3dhxa1 d.58.18.13 (A:2-100) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}
Probab=6.95 E-value=1.8e+02 Score=21.42 Aligned_cols=25 Identities=24% Similarity=0.599 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhcCCCceEEEEeee
Q 014144 378 YQKRQALVTYLENNRAGITVFGFMM 402 (430)
Q Consensus 378 fqkRQAlVtYLq~N~~GITvfGf~l 402 (430)
=++.|+...||+.+.--+.|-|+++
T Consensus 74 ~~~i~~al~~L~~~~v~vEvlgyV~ 98 (99)
T d3dhxa1 74 QQDTQAAIAWLQEHHVKVEVLGYVL 98 (99)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCeEEEeeeec
Confidence 3577888999999999999999987
No 7
>d3c2ca_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum rubrum [TaxId: 1085]}
Probab=6.83 E-value=87 Score=22.65 Aligned_cols=16 Identities=13% Similarity=0.337 Sum_probs=13.7
Q ss_pred chhHHHHHHHHHHhhc
Q 014144 375 TVSYQKRQALVTYLEN 390 (430)
Q Consensus 375 ~~SfqkRQAlVtYLq~ 390 (430)
..+=|.|.++|.||+.
T Consensus 95 ~ls~qdi~divAYL~t 110 (112)
T d3c2ca_ 95 LTKDDEIENVIAYLKT 110 (112)
T ss_dssp CCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4578999999999985
No 8
>d1ycca_ a.3.1.1 (A:) Mitochondrial cytochrome c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.44 E-value=92 Score=23.57 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=14.5
Q ss_pred cchhHHHHHHHHHHhhcC
Q 014144 374 QTVSYQKRQALVTYLENN 391 (430)
Q Consensus 374 ~~~SfqkRQAlVtYLq~N 391 (430)
...+=+.|++++.||+..
T Consensus 89 gi~~~~d~~~liaYLks~ 106 (108)
T d1ycca_ 89 GLKKEKDRNDLITYLKKA 106 (108)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 444678999999999964
No 9
>d1lfma_ a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin tuna (Thunnus thynnus) [TaxId: 8237]}
Probab=6.30 E-value=1.1e+02 Score=21.35 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=14.6
Q ss_pred cchhHHHHHHHHHHhhcC
Q 014144 374 QTVSYQKRQALVTYLENN 391 (430)
Q Consensus 374 ~~~SfqkRQAlVtYLq~N 391 (430)
..-+=|+|+++|.||+..
T Consensus 84 ~~ls~~ei~dviAYLkt~ 101 (103)
T d1lfma_ 84 GIKKKGERQDLVAYLKSA 101 (103)
T ss_dssp CCCSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 345789999999999864
No 10
>d1c6sa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Cyanobacterium (Synechococcus elongatus) [TaxId: 32046]}
Probab=6.15 E-value=3.9e+02 Score=17.93 Aligned_cols=24 Identities=13% Similarity=0.333 Sum_probs=17.8
Q ss_pred CCCCCccchhHHHHHHHHHHhhcC
Q 014144 368 INPIYPQTVSYQKRQALVTYLENN 391 (430)
Q Consensus 368 ~~~~~~~~~SfqkRQAlVtYLq~N 391 (430)
.+|.+....|=+...+++.|+.++
T Consensus 57 ~mp~~~~~Ls~~ei~~v~aYi~~~ 80 (87)
T d1c6sa_ 57 AMPAFAGRLTDEQIQDVAAYVLDQ 80 (87)
T ss_dssp TBCCCTTTSCSHHHHHHHHHHHHH
T ss_pred ccccccCCCCHHHHHHHHHHHHHH
Confidence 356666556778899999999653
Done!