Query 014145
Match_columns 430
No_of_seqs 169 out of 2237
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 02:16:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 1.3E-22 2.8E-27 223.2 20.0 302 32-393 596-903 (1153)
2 PLN03210 Resistant to P. syrin 99.8 1.7E-19 3.7E-24 198.6 19.3 285 38-376 621-910 (1153)
3 PLN00113 leucine-rich repeat r 99.8 7.2E-19 1.6E-23 192.5 17.1 287 76-393 137-438 (968)
4 PLN00113 leucine-rich repeat r 99.8 7.6E-19 1.6E-23 192.3 13.5 352 43-423 204-586 (968)
5 KOG4194 Membrane glycoprotein 99.6 2.3E-16 4.9E-21 152.0 6.7 310 47-391 98-447 (873)
6 KOG4194 Membrane glycoprotein 99.6 5.6E-17 1.2E-21 156.2 0.6 215 131-367 213-447 (873)
7 KOG0444 Cytoskeletal regulator 99.6 1E-16 2.3E-21 155.4 -3.1 132 221-373 243-376 (1255)
8 KOG0444 Cytoskeletal regulator 99.6 8E-17 1.7E-21 156.2 -4.0 324 29-394 33-373 (1255)
9 KOG4341 F-box protein containi 99.4 3.8E-15 8.2E-20 138.6 -7.2 284 80-392 139-435 (483)
10 PRK15387 E3 ubiquitin-protein 99.4 8.4E-12 1.8E-16 129.5 14.8 254 51-394 201-456 (788)
11 KOG4341 F-box protein containi 99.3 9.9E-15 2.1E-19 135.9 -7.9 310 51-390 138-459 (483)
12 PRK15387 E3 ubiquitin-protein 99.3 1.6E-11 3.4E-16 127.5 13.2 244 39-371 212-457 (788)
13 KOG0472 Leucine-rich repeat pr 99.2 1.8E-13 4E-18 126.8 -5.4 310 38-396 193-541 (565)
14 KOG0618 Serine/threonine phosp 99.2 3.2E-12 7E-17 129.8 0.9 214 164-394 217-487 (1081)
15 PRK15370 E3 ubiquitin-protein 99.1 2.1E-10 4.6E-15 119.7 10.8 244 51-370 178-426 (754)
16 KOG4658 Apoptotic ATPase [Sign 99.1 4.5E-11 9.8E-16 126.6 4.6 126 248-378 714-848 (889)
17 PRK15370 E3 ubiquitin-protein 99.1 1.4E-10 3E-15 121.1 8.0 234 40-344 190-426 (754)
18 KOG0472 Leucine-rich repeat pr 99.1 6.5E-13 1.4E-17 123.2 -9.8 240 101-394 64-308 (565)
19 KOG0618 Serine/threonine phosp 98.9 9.1E-11 2E-15 119.5 -2.2 115 213-345 373-488 (1081)
20 KOG4658 Apoptotic ATPase [Sign 98.9 2E-09 4.4E-14 114.2 5.1 290 49-378 543-866 (889)
21 cd00116 LRR_RI Leucine-rich re 98.7 2.1E-09 4.6E-14 102.6 -0.9 88 223-312 137-232 (319)
22 KOG0617 Ras suppressor protein 98.7 9.4E-10 2E-14 91.2 -3.2 83 77-177 31-113 (264)
23 cd00116 LRR_RI Leucine-rich re 98.6 8.9E-09 1.9E-13 98.3 1.6 91 220-312 162-261 (319)
24 KOG3207 Beta-tubulin folding c 98.5 2.5E-08 5.3E-13 94.2 0.8 38 77-115 119-156 (505)
25 KOG3207 Beta-tubulin folding c 98.5 3.1E-08 6.6E-13 93.6 -0.0 203 49-283 119-334 (505)
26 KOG0617 Ras suppressor protein 98.4 1E-08 2.2E-13 85.1 -3.7 173 39-273 22-194 (264)
27 KOG4237 Extracellular matrix p 98.3 3.2E-08 6.8E-13 92.4 -3.6 85 219-310 270-355 (498)
28 KOG4237 Extracellular matrix p 98.3 3.9E-08 8.5E-13 91.8 -3.6 95 297-402 270-366 (498)
29 KOG1947 Leucine rich repeat pr 98.3 4.6E-08 9.9E-13 98.9 -4.0 16 221-236 293-308 (482)
30 PF14580 LRR_9: Leucine-rich r 98.2 1.1E-06 2.4E-11 75.4 3.5 106 51-177 19-124 (175)
31 KOG2120 SCF ubiquitin ligase, 98.2 5.7E-08 1.2E-12 87.6 -4.6 178 52-261 186-373 (419)
32 PRK15386 type III secretion pr 98.1 1.2E-05 2.6E-10 77.5 8.7 32 332-368 155-186 (426)
33 PRK15386 type III secretion pr 98.1 2.6E-05 5.6E-10 75.3 10.9 16 106-121 73-88 (426)
34 KOG2120 SCF ubiquitin ligase, 98.1 1.9E-07 4E-12 84.3 -3.4 145 248-393 207-373 (419)
35 PF14580 LRR_9: Leucine-rich r 98.1 3.8E-06 8.2E-11 72.1 4.2 55 79-148 19-73 (175)
36 KOG1947 Leucine rich repeat pr 98.0 2.1E-07 4.5E-12 94.1 -5.7 113 78-197 187-307 (482)
37 PF13855 LRR_8: Leucine rich r 98.0 9.8E-06 2.1E-10 56.8 4.1 59 79-149 1-59 (61)
38 KOG1259 Nischarin, modulator o 97.9 6.7E-06 1.4E-10 74.5 2.9 127 186-345 285-411 (490)
39 KOG2982 Uncharacterized conser 97.7 1.7E-05 3.6E-10 71.9 1.6 92 223-317 173-265 (418)
40 PF13855 LRR_8: Leucine rich r 97.6 0.00013 2.8E-09 51.1 5.5 58 223-285 1-59 (61)
41 KOG1259 Nischarin, modulator o 97.6 8.6E-06 1.9E-10 73.8 -1.2 81 136-234 326-410 (490)
42 KOG0532 Leucine-rich repeat (L 97.5 1E-05 2.2E-10 79.3 -3.1 139 38-201 85-227 (722)
43 KOG3665 ZYG-1-like serine/thre 97.3 0.00011 2.3E-09 76.8 2.6 112 50-178 121-232 (699)
44 COG4886 Leucine-rich repeat (L 97.2 0.00025 5.5E-09 69.9 3.9 174 77-291 114-293 (394)
45 COG4886 Leucine-rich repeat (L 97.2 0.00033 7.1E-09 69.1 4.5 172 101-313 112-289 (394)
46 KOG3665 ZYG-1-like serine/thre 96.8 0.00031 6.7E-09 73.4 0.4 86 78-177 121-206 (699)
47 KOG1909 Ran GTPase-activating 96.8 0.00024 5.1E-09 66.0 -0.6 242 39-312 18-281 (382)
48 PLN03150 hypothetical protein; 96.7 0.0039 8.4E-08 65.1 6.9 82 81-177 420-501 (623)
49 PLN03150 hypothetical protein; 96.6 0.0029 6.3E-08 66.1 5.7 110 52-181 419-530 (623)
50 KOG1859 Leucine-rich repeat pr 96.6 5.2E-05 1.1E-09 76.6 -6.9 86 219-312 205-290 (1096)
51 KOG2982 Uncharacterized conser 96.5 0.00082 1.8E-08 61.3 0.3 92 251-350 173-266 (418)
52 KOG1859 Leucine-rich repeat pr 96.2 7.3E-05 1.6E-09 75.5 -8.6 102 136-262 184-290 (1096)
53 PF12799 LRR_4: Leucine Rich r 96.2 0.0058 1.3E-07 39.4 3.1 39 79-121 1-39 (44)
54 KOG0531 Protein phosphatase 1, 96.1 0.00099 2.1E-08 66.1 -1.4 104 76-200 92-201 (414)
55 KOG0532 Leucine-rich repeat (L 96.1 0.00091 2E-08 66.1 -1.7 73 39-121 109-181 (722)
56 KOG1644 U2-associated snRNP A' 95.7 0.022 4.7E-07 49.4 5.3 84 78-177 41-124 (233)
57 PF12799 LRR_4: Leucine Rich r 95.2 0.022 4.7E-07 36.7 3.0 33 252-285 2-34 (44)
58 KOG0531 Protein phosphatase 1, 94.7 0.0088 1.9E-07 59.4 0.1 114 40-177 84-197 (414)
59 KOG1909 Ran GTPase-activating 94.6 0.0043 9.4E-08 57.8 -2.2 146 220-371 154-310 (382)
60 KOG1644 U2-associated snRNP A' 94.4 0.092 2E-06 45.6 5.5 109 52-177 43-151 (233)
61 KOG3864 Uncharacterized conser 94.3 0.0052 1.1E-07 53.1 -2.1 66 298-370 122-187 (221)
62 KOG2123 Uncharacterized conser 94.1 0.0012 2.6E-08 59.7 -6.7 85 222-315 18-102 (388)
63 KOG3864 Uncharacterized conser 94.0 0.0063 1.4E-07 52.6 -2.2 44 273-316 123-166 (221)
64 KOG2739 Leucine-rich acidic nu 93.7 0.033 7.2E-07 50.1 1.6 40 136-177 88-127 (260)
65 KOG2123 Uncharacterized conser 92.3 0.012 2.6E-07 53.4 -3.2 83 50-151 18-100 (388)
66 KOG2739 Leucine-rich acidic nu 91.8 0.099 2.1E-06 47.1 2.0 89 219-311 61-153 (260)
67 PF13306 LRR_5: Leucine rich r 91.2 1 2.2E-05 36.2 7.3 10 137-146 33-42 (129)
68 PF13306 LRR_5: Leucine rich r 90.0 1.9 4.1E-05 34.5 7.9 14 101-114 31-44 (129)
69 PF13504 LRR_7: Leucine rich r 88.9 0.31 6.7E-06 24.2 1.5 15 360-375 2-16 (17)
70 COG5238 RNA1 Ran GTPase-activa 87.0 0.11 2.5E-06 47.1 -1.4 142 162-312 88-253 (388)
71 PF00560 LRR_1: Leucine Rich R 83.9 0.76 1.7E-05 24.4 1.5 17 361-378 2-18 (22)
72 smart00367 LRR_CC Leucine-rich 83.3 0.72 1.6E-05 25.7 1.2 17 358-374 1-17 (26)
73 KOG4579 Leucine-rich repeat (L 79.5 0.22 4.8E-06 40.6 -2.4 60 104-177 52-111 (177)
74 KOG4579 Leucine-rich repeat (L 75.0 0.16 3.4E-06 41.5 -4.4 61 77-150 51-111 (177)
75 smart00370 LRR Leucine-rich re 56.9 6.3 0.00014 21.6 1.0 11 105-115 2-12 (26)
76 smart00369 LRR_TYP Leucine-ric 56.9 6.3 0.00014 21.6 1.0 11 105-115 2-12 (26)
77 COG5238 RNA1 Ran GTPase-activa 53.1 8.6 0.00019 35.4 1.8 102 39-149 18-130 (388)
78 PF13516 LRR_6: Leucine Rich r 50.8 9.7 0.00021 20.4 1.1 12 105-116 2-13 (24)
79 PF07725 LRR_3: Leucine Rich R 39.5 15 0.00033 19.1 0.7 19 52-71 1-19 (20)
80 smart00365 LRR_SD22 Leucine-ri 29.4 46 0.001 18.6 1.6 17 104-121 1-17 (26)
81 smart00368 LRR_RI Leucine rich 21.2 59 0.0013 18.2 1.1 12 105-116 2-13 (28)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.3e-22 Score=223.18 Aligned_cols=302 Identities=20% Similarity=0.324 Sum_probs=186.5
Q ss_pred ecccccchhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEE
Q 014145 32 WEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLE 111 (430)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 111 (430)
|.++ +++.+|... .+.+|+.|++.++. ++.+|.+. ..+++|+.|++++|.++..++ . +..+++|++|+
T Consensus 596 ~~~~---~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~----~~l~~Lk~L~Ls~~~~l~~ip-~--ls~l~~Le~L~ 663 (1153)
T PLN03210 596 WDKY---PLRCMPSNF-RPENLVKLQMQGSK-LEKLWDGV----HSLTGLRNIDLRGSKNLKEIP-D--LSMATNLETLK 663 (1153)
T ss_pred ecCC---CCCCCCCcC-CccCCcEEECcCcc-cccccccc----ccCCCCCEEECCCCCCcCcCC-c--cccCCcccEEE
Confidence 5553 355566554 56899999999876 88888887 789999999999998777654 3 56789999999
Q ss_pred EecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc--CCCceE
Q 014145 112 VRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVH 189 (430)
Q Consensus 112 l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~ 189 (430)
+++|..+..+ |..+ ..+++|+.|++.+|..+..+|.. .++++|++|.+.+|..+..++ +.+|+.
T Consensus 664 L~~c~~L~~l---------p~si-~~L~~L~~L~L~~c~~L~~Lp~~----i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~ 729 (1153)
T PLN03210 664 LSDCSSLVEL---------PSSI-QYLNKLEDLDMSRCENLEILPTG----INLKSLYRLNLSGCSRLKSFPDISTNISW 729 (1153)
T ss_pred ecCCCCcccc---------chhh-hccCCCCEEeCCCCCCcCccCCc----CCCCCCCEEeCCCCCCccccccccCCcCe
Confidence 9999988887 6665 88999999999999999988764 378999999999999888876 568999
Q ss_pred EEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCch----hhhhcccccEEEeecCCCcc
Q 014145 190 VTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDE----SNKAFANLIRLKISECSKLQ 265 (430)
Q Consensus 190 L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~----~~~~l~~L~~L~l~~c~~l~ 265 (430)
|+++++.+..+++ ...+++|++|.+.++... .++....+ ....+++|+.|++++|+.+.
T Consensus 730 L~L~~n~i~~lP~----------------~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~ 792 (1153)
T PLN03210 730 LDLDETAIEEFPS----------------NLRLENLDELILCEMKSE-KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV 792 (1153)
T ss_pred eecCCCccccccc----------------cccccccccccccccchh-hccccccccchhhhhccccchheeCCCCCCcc
Confidence 9999998766541 123445555555443211 00000000 00223455556665555555
Q ss_pred cccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCC
Q 014145 266 KLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPS 345 (430)
Q Consensus 266 ~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 345 (430)
.+|..+.++++|+.|++++|..++.+|.. .++++|+.|++++|..+..++.. ..+|+.|++.+. .
T Consensus 793 ~lP~si~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p~~-----------~~nL~~L~Ls~n-~ 857 (1153)
T PLN03210 793 ELPSSIQNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSRLRTFPDI-----------STNISDLNLSRT-G 857 (1153)
T ss_pred ccChhhhCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCcccccccc-----------ccccCEeECCCC-C
Confidence 55555555555666666655555555432 14555555666555554433210 233444444432 3
Q ss_pred CceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeeecccc
Q 014145 346 LTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 393 (430)
Q Consensus 346 L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~ 393 (430)
++.++.. ...+++|+.|++.+|++++.+|.....+++|+.+++.+|
T Consensus 858 i~~iP~s--i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 858 IEEVPWW--IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CccChHH--HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 3333321 112444444444444444444443334444444444443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=1.7e-19 Score=198.62 Aligned_cols=285 Identities=24% Similarity=0.356 Sum_probs=200.8
Q ss_pred chhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCC
Q 014145 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 117 (430)
+.+..+|.+...+++|+.|+++++..++.++. . ..+++|+.|++++|..+..++.. +..+++|+.|++++|..
T Consensus 621 s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l----s~l~~Le~L~L~~c~~L~~lp~s--i~~L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 621 SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-L----SMATNLETLKLSDCSSLVELPSS--IQYLNKLEDLDMSRCEN 693 (1153)
T ss_pred ccccccccccccCCCCCEEECCCCCCcCcCCc-c----ccCCcccEEEecCCCCccccchh--hhccCCCCEEeCCCCCC
Confidence 56777888888999999999999877776442 1 46899999999999988775443 78899999999999998
Q ss_pred ccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc----CCCceEEEec
Q 014145 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTD 193 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~l~ 193 (430)
++.+ |.++ .+++|+.|++++|..+..+|. ...+|++|.+.++. ++.+| ..+|+.|.+.
T Consensus 694 L~~L---------p~~i--~l~sL~~L~Lsgc~~L~~~p~------~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~ 755 (1153)
T PLN03210 694 LEIL---------PTGI--NLKSLYRLNLSGCSRLKSFPD------ISTNISWLDLDETA-IEEFPSNLRLENLDELILC 755 (1153)
T ss_pred cCcc---------CCcC--CCCCCCEEeCCCCCCcccccc------ccCCcCeeecCCCc-ccccccccccccccccccc
Confidence 8887 5543 689999999999988877754 24688899998775 66555 3467777776
Q ss_pred CCCCCcccC-CCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcc
Q 014145 194 NKEPEKLTS-EENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSW 272 (430)
Q Consensus 194 ~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~ 272 (430)
++....+.. +..+ .. .....+++|+.|++++++.+..++. .+ ..+++|+.|++++|..++.+|...
T Consensus 756 ~~~~~~l~~~~~~l------~~--~~~~~~~sL~~L~Ls~n~~l~~lP~-si---~~L~~L~~L~Ls~C~~L~~LP~~~- 822 (1153)
T PLN03210 756 EMKSEKLWERVQPL------TP--LMTMLSPSLTRLFLSDIPSLVELPS-SI---QNLHKLEHLEIENCINLETLPTGI- 822 (1153)
T ss_pred ccchhhcccccccc------ch--hhhhccccchheeCCCCCCccccCh-hh---hCCCCCCEEECCCCCCcCeeCCCC-
Confidence 644322110 0000 00 0012346788888888776666543 33 677888888888888888887655
Q ss_pred cCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccC
Q 014145 273 HLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLG 352 (430)
Q Consensus 273 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 352 (430)
.+++|+.|++++|..+..++. ...+|++|+++++ .+++++. ....+++|+.|++.+|++|+.++..
T Consensus 823 ~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~n-~i~~iP~--------si~~l~~L~~L~L~~C~~L~~l~~~ 888 (1153)
T PLN03210 823 NLESLESLDLSGCSRLRTFPD-----ISTNISDLNLSRT-GIEEVPW--------WIEKFSNLSFLDMNGCNNLQRVSLN 888 (1153)
T ss_pred CccccCEEECCCCCccccccc-----cccccCEeECCCC-CCccChH--------HHhcCCCCCEEECCCCCCcCccCcc
Confidence 678888888888887776653 1356777777664 3444431 2233777888888888888877663
Q ss_pred CcccCCCCccEEeeccCCCCcccC
Q 014145 353 NYALEFPSLEHVVVRQCPTMKIFS 376 (430)
Q Consensus 353 ~~~~~~~~L~~L~l~~c~~l~~~~ 376 (430)
. ..+++|+.+++.+|.+++.++
T Consensus 889 ~--~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 889 I--SKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred c--ccccCCCeeecCCCccccccc
Confidence 3 346778888888887776543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.80 E-value=7.2e-19 Score=192.47 Aligned_cols=287 Identities=14% Similarity=0.061 Sum_probs=127.8
Q ss_pred CCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccc
Q 014145 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~ 155 (430)
+.+++|++|++++|. +....|.. ++.+++|++|++++|.....+ |..+ ..+++|++|+++++.....+
T Consensus 137 ~~l~~L~~L~Ls~n~-~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~---------p~~~-~~l~~L~~L~L~~n~l~~~~ 204 (968)
T PLN00113 137 GSIPNLETLDLSNNM-LSGEIPND-IGSFSSLKVLDLGGNVLVGKI---------PNSL-TNLTSLEFLTLASNQLVGQI 204 (968)
T ss_pred cccCCCCEEECcCCc-ccccCChH-HhcCCCCCEEECccCcccccC---------Chhh-hhCcCCCeeeccCCCCcCcC
Confidence 345555555555542 22222322 455566666666655322222 2332 55566666666655433333
Q ss_pred cCCccccccCCCccEEEeccCCCccccc-----CCCceEEEecCCCCCccc-----CCCceeeec---C-c-ccccccCC
Q 014145 156 CNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKLT-----SEENFFLTD---Q-I-QPLFDEKV 220 (430)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~~~-----~~~~l~~~~---~-~-~~~~~~~~ 220 (430)
|.. +..+++|++|.+.+|......+ ..+|++|++++|.+.+.. .++++..++ . . ..+-....
T Consensus 205 p~~---l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 281 (968)
T PLN00113 205 PRE---LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF 281 (968)
T ss_pred ChH---HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh
Confidence 332 4455666666665554222222 345666666655533211 111111110 0 0 00011122
Q ss_pred CCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccc
Q 014145 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESL 300 (430)
Q Consensus 221 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l 300 (430)
.+++|++|+++++ .+....+..+ ..+++|+.|++.++.....+|..+..+++|+.|++++|.-...++. .++.+
T Consensus 282 ~l~~L~~L~Ls~n-~l~~~~p~~~---~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~--~l~~~ 355 (968)
T PLN00113 282 SLQKLISLDLSDN-SLSGEIPELV---IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK--NLGKH 355 (968)
T ss_pred hccCcCEEECcCC-eeccCCChhH---cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh--HHhCC
Confidence 3344444444433 1211111111 3344444444444433333333344444444444444432222222 23334
Q ss_pred cccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCc
Q 014145 301 VNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVV 380 (430)
Q Consensus 301 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 380 (430)
++|+.|+++++.....++ .....+++|+.|++.++.--..++. ....+++|+.|++.+|.....+|..+.
T Consensus 356 ~~L~~L~Ls~n~l~~~~p--------~~~~~~~~L~~L~l~~n~l~~~~p~--~~~~~~~L~~L~L~~n~l~~~~p~~~~ 425 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIP--------EGLCSSGNLFKLILFSNSLEGEIPK--SLGACRSLRRVRLQDNSFSGELPSEFT 425 (968)
T ss_pred CCCcEEECCCCeeEeeCC--------hhHhCcCCCCEEECcCCEecccCCH--HHhCCCCCCEEECcCCEeeeECChhHh
Confidence 444445444432211111 0111244555666655433223332 223477888888888766556776677
Q ss_pred CCCCceeeecccc
Q 014145 381 DAPKLNKVKPTEE 393 (430)
Q Consensus 381 ~~~~L~~l~l~~~ 393 (430)
.+++|+.+++.++
T Consensus 426 ~l~~L~~L~Ls~N 438 (968)
T PLN00113 426 KLPLVYFLDISNN 438 (968)
T ss_pred cCCCCCEEECcCC
Confidence 7888888888664
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.78 E-value=7.6e-19 Score=192.32 Aligned_cols=352 Identities=14% Similarity=0.065 Sum_probs=169.5
Q ss_pred hhhcccCCCCcceeecccccCCe-eeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEe
Q 014145 43 CYEEMIGFRDIKYLQLGHFPRLQ-EIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEV 121 (430)
Q Consensus 43 l~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 121 (430)
+|..+..+++|++|+++++. +. .++... ..+++|++|++++|. +....|.. +..+++|++|++++|.....+
T Consensus 204 ~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l----~~l~~L~~L~L~~n~-l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~ 276 (968)
T PLN00113 204 IPRELGQMKSLKWIYLGYNN-LSGEIPYEI----GGLTSLNHLDLVYNN-LTGPIPSS-LGNLKNLQYLFLYQNKLSGPI 276 (968)
T ss_pred CChHHcCcCCccEEECcCCc-cCCcCChhH----hcCCCCCEEECcCce-eccccChh-HhCCCCCCEEECcCCeeeccC
Confidence 45555566677777766655 32 212111 455666666666653 33223322 555666666666665322111
Q ss_pred cc------------c--ccc-cCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc---
Q 014145 122 LH------------L--EEL-NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--- 183 (430)
Q Consensus 122 ~~------------~--~~~-~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--- 183 (430)
.. + ..+ ...|.. +..+++|+.|++.++.....+|.. +..+++|++|.+.+|......+
T Consensus 277 p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~l~~n~~~~~~~~~---~~~l~~L~~L~L~~n~l~~~~p~~l 352 (968)
T PLN00113 277 PPSIFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNFTGKIPVA---LTSLPRLQVLQLWSNKFSGEIPKNL 352 (968)
T ss_pred chhHhhccCcCEEECcCCeeccCCChh-HcCCCCCcEEECCCCccCCcCChh---HhcCCCCCEEECcCCCCcCcCChHH
Confidence 00 0 000 000111 134444455544444332222222 3344555555555443221222
Q ss_pred --CCCceEEEecCCCCCccc--------CCCceeeecC--cccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcc
Q 014145 184 --SNSVVHVTTDNKEPEKLT--------SEENFFLTDQ--IQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFA 251 (430)
Q Consensus 184 --~~~L~~L~l~~~~~~~~~--------~~~~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~ 251 (430)
..+|+.|++++|.+.... .++.+.+.+. ...+....+.+++|+.|+++++ .+....+..+ ..++
T Consensus 353 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n-~l~~~~p~~~---~~l~ 428 (968)
T PLN00113 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN-SFSGELPSEF---TKLP 428 (968)
T ss_pred hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC-EeeeECChhH---hcCC
Confidence 234555555554432111 1111111100 0111112334555666666554 2322222223 4556
Q ss_pred cccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCccee
Q 014145 252 NLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVV 331 (430)
Q Consensus 252 ~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 331 (430)
+|+.|+++++.....++.....+++|+.|++++|.....++. ....++|+.|++++|.....++ .....
T Consensus 429 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~---~~~~~~L~~L~ls~n~l~~~~~--------~~~~~ 497 (968)
T PLN00113 429 LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD---SFGSKRLENLDLSRNQFSGAVP--------RKLGS 497 (968)
T ss_pred CCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc---ccccccceEEECcCCccCCccC--------hhhhh
Confidence 666666666544444444444566666666666654444432 1223566667776654322221 11223
Q ss_pred ecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeeeccccCCCCCcccccCchhHHHH
Q 014145 332 FEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTIK 411 (430)
Q Consensus 332 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~l~ 411 (430)
+++|+.|+++++.-...++. ....+++|++|++++|.....+|..+..+++|+.+++.++..-. ..........+++
T Consensus 498 l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~ 574 (968)
T PLN00113 498 LSELMQLKLSENKLSGEIPD--ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG-EIPKNLGNVESLV 574 (968)
T ss_pred hhccCEEECcCCcceeeCCh--HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc-cCChhHhcCcccC
Confidence 67788888888744444543 22347889999999887766777777788999999997654221 1111112223455
Q ss_pred HHHHHhhccccC
Q 014145 412 KLFNEMNSKEKI 423 (430)
Q Consensus 412 ~~~~~~~~~~~~ 423 (430)
.+.+..+.+..-
T Consensus 575 ~l~ls~N~l~~~ 586 (968)
T PLN00113 575 QVNISHNHLHGS 586 (968)
T ss_pred EEeccCCcceee
Confidence 556666665543
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.64 E-value=2.3e-16 Score=152.01 Aligned_cols=310 Identities=16% Similarity=0.161 Sum_probs=155.4
Q ss_pred ccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccc
Q 014145 47 MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEE 126 (430)
Q Consensus 47 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 126 (430)
...+|+|+.+++.++. ++.++... ....+|+.|++.+ |+........++.++.|++||++.| .+.++
T Consensus 98 f~nl~nLq~v~l~~N~-Lt~IP~f~----~~sghl~~L~L~~--N~I~sv~se~L~~l~alrslDLSrN-~is~i----- 164 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKNE-LTRIPRFG----HESGHLEKLDLRH--NLISSVTSEELSALPALRSLDLSRN-LISEI----- 164 (873)
T ss_pred HhcCCcceeeeeccch-hhhccccc----ccccceeEEeeec--cccccccHHHHHhHhhhhhhhhhhc-hhhcc-----
Confidence 4567888888888665 77766655 5566788888887 4444444444677888888888887 46665
Q ss_pred ccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc------CCCceEEEecCCCCCcc
Q 014145 127 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKL 200 (430)
Q Consensus 127 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~~~ 200 (430)
|...+..-.++++|++.++ .+..+ ..+...++.+|..|.+.++. ++.+| .+.|+.|++.+|.+..+
T Consensus 165 ----~~~sfp~~~ni~~L~La~N-~It~l--~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 165 ----PKPSFPAKVNIKKLNLASN-RITTL--ETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred ----cCCCCCCCCCceEEeeccc-ccccc--ccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeee
Confidence 3333344456777777663 44333 22224455666666666654 55554 34566666666553321
Q ss_pred --------cCCCceeeec-Ccccccc-cCCCCCCCCEEecccC-----------------------CCceeeccCCchhh
Q 014145 201 --------TSEENFFLTD-QIQPLFD-EKVAFPQLRYLELSRL-----------------------HKVQHLWKENDESN 247 (430)
Q Consensus 201 --------~~~~~l~~~~-~~~~~~~-~~~~~~~L~~L~l~~~-----------------------~~l~~~~~~~~~~~ 247 (430)
.+++.+.+.+ +..++-+ .+..+.++++|++... +.+..+....+
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W--- 313 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW--- 313 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh---
Confidence 1222222211 0111110 1122334444444431 23444444333
Q ss_pred hhcccccEEEeecCCCcccccCC-cccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccC
Q 014145 248 KAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEA 326 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 326 (430)
..+++|+.|++++. .++.++.. +..+..|++|.++. +++.++.... +..+.+|++|++.+... .-.+ +.-+
T Consensus 314 sftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~a-f~~lssL~~LdLr~N~l-s~~I----EDaa 385 (873)
T KOG4194|consen 314 SFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGA-FVGLSSLHKLDLRSNEL-SWCI----EDAA 385 (873)
T ss_pred hhcccceeEecccc-ccccCChhHHHHHHHhhhhcccc-cchHHHHhhH-HHHhhhhhhhcCcCCeE-EEEE----ecch
Confidence 44444444444442 33333321 22344444444444 2333333221 23344555555544321 1111 1111
Q ss_pred CcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeeecc
Q 014145 327 KGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPT 391 (430)
Q Consensus 327 ~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~ 391 (430)
.....+++|++|.+.+ .+++.++.. -+..+++|++|++.+..--..-+..++++ .|++|.+.
T Consensus 386 ~~f~gl~~LrkL~l~g-Nqlk~I~kr-Afsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 386 VAFNGLPSLRKLRLTG-NQLKSIPKR-AFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred hhhccchhhhheeecC-ceeeecchh-hhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 1222366677777766 366666642 23356677777776654433344445555 66666663
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.62 E-value=5.6e-17 Score=156.16 Aligned_cols=215 Identities=16% Similarity=0.205 Sum_probs=126.7
Q ss_pred ccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccc------cCCCceEEEecCCCCCcc----
Q 014145 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETF------ISNSVVHVTTDNKEPEKL---- 200 (430)
Q Consensus 131 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~------~~~~L~~L~l~~~~~~~~---- 200 (430)
|.-.+..+|+|+.|++..+ .++.+ .+. ....+++|+.|.+.++. +..+ .+..+++|+++.|.+...
T Consensus 213 p~r~Fk~L~~L~~LdLnrN-~iriv-e~l-tFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~ 288 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRN-RIRIV-EGL-TFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW 288 (873)
T ss_pred CHHHhhhcchhhhhhcccc-ceeee-hhh-hhcCchhhhhhhhhhcC-cccccCcceeeecccceeecccchhhhhhccc
Confidence 4444556666666666542 22211 010 13455566666655443 2211 145566666665553321
Q ss_pred -cCCCceeeec----Ccccc-cccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCC-ccc
Q 014145 201 -TSEENFFLTD----QIQPL-FDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWH 273 (430)
Q Consensus 201 -~~~~~l~~~~----~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-l~~ 273 (430)
..+++++.++ ....+ .++....++|+.|++++ +.++.+.++.+ ..+..|++|.++.. .++.+... +..
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf---~~L~~Le~LnLs~N-si~~l~e~af~~ 363 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSF---RVLSQLEELNLSHN-SIDHLAEGAFVG 363 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEeccc-cccccCChhHH---HHHHHhhhhccccc-chHHHHhhHHHH
Confidence 1223332211 11111 12345678999999998 58999888888 88999999999984 45555433 346
Q ss_pred CCCCCEEEEccCCC---cccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceec
Q 014145 274 LENLATLEVSKCHG---LINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFC 350 (430)
Q Consensus 274 l~~L~~L~l~~c~~---l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~ 350 (430)
+.+|++|+++...- +++. .. .+..+++|++|++.+ ++++.+... ....++.|+.|++.+. -+.++.
T Consensus 364 lssL~~LdLr~N~ls~~IEDa-a~-~f~gl~~LrkL~l~g-Nqlk~I~kr-------Afsgl~~LE~LdL~~N-aiaSIq 432 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDA-AV-AFNGLPSLRKLRLTG-NQLKSIPKR-------AFSGLEALEHLDLGDN-AIASIQ 432 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecc-hh-hhccchhhhheeecC-ceeeecchh-------hhccCcccceecCCCC-cceeec
Confidence 77888998887532 2231 22 234589999999987 467777543 2233888999999874 566666
Q ss_pred cCCcccCCCCccEEeec
Q 014145 351 LGNYALEFPSLEHVVVR 367 (430)
Q Consensus 351 ~~~~~~~~~~L~~L~l~ 367 (430)
... +..+ .|++|.+.
T Consensus 433 ~nA-Fe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 433 PNA-FEPM-ELKELVMN 447 (873)
T ss_pred ccc-cccc-hhhhhhhc
Confidence 522 2233 78888865
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.57 E-value=1e-16 Score=155.40 Aligned_cols=132 Identities=23% Similarity=0.291 Sum_probs=73.8
Q ss_pred CCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcc--cccCchhhc
Q 014145 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLI--NVLTLSTSE 298 (430)
Q Consensus 221 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~--~l~~~~~~~ 298 (430)
.+++|+.|.+++ +.++.+.... ..-.+|++|+++. +.++.+|..+..++.|+.|++.+. +++ -+|+ .++
T Consensus 243 ~l~~LrrLNLS~-N~iteL~~~~----~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~N-kL~FeGiPS--GIG 313 (1255)
T KOG0444|consen 243 KLRNLRRLNLSG-NKITELNMTE----GEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNN-KLTFEGIPS--GIG 313 (1255)
T ss_pred hhhhhheeccCc-CceeeeeccH----HHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccC-cccccCCcc--chh
Confidence 455667777776 3555543221 3345666777766 356667766667777777766553 233 2332 356
Q ss_pred cccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCc
Q 014145 299 SLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMK 373 (430)
Q Consensus 299 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~ 373 (430)
.+.+|+.+...+. +++-++ .+..-+++|+.|.+.+ ..|..++.+... ++.|+.|+++..+++-
T Consensus 314 KL~~Levf~aanN-~LElVP--------EglcRC~kL~kL~L~~-NrLiTLPeaIHl--L~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 314 KLIQLEVFHAANN-KLELVP--------EGLCRCVKLQKLKLDH-NRLITLPEAIHL--LPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhhhHHHHhhcc-ccccCc--------hhhhhhHHHHHhcccc-cceeechhhhhh--cCCcceeeccCCcCcc
Confidence 6666666665542 233222 2233366666666653 455556554444 6667777777766663
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.57 E-value=8e-17 Score=156.18 Aligned_cols=324 Identities=19% Similarity=0.232 Sum_probs=187.1
Q ss_pred ceeecccccchhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCc-cCchhHHHhcCCC
Q 014145 29 LRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLS-AIPANLIRCLNNL 107 (430)
Q Consensus 29 ~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~~~l~~L 107 (430)
..+|----++.+..+|+++..+.+|++|.+.++. +..+.-.. ..+|.||.+.+.+. ++.. -+|.. +-++.-|
T Consensus 33 ~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGEL----s~Lp~LRsv~~R~N-~LKnsGiP~d-iF~l~dL 105 (1255)
T KOG0444|consen 33 QMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ-LISVHGEL----SDLPRLRSVIVRDN-NLKNSGIPTD-IFRLKDL 105 (1255)
T ss_pred heeEEEechhhhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhh----ccchhhHHHhhhcc-ccccCCCCch-hcccccc
Confidence 4555443447788899999999999999998876 65533222 56888888888876 3433 33544 4458889
Q ss_pred CEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccC---
Q 014145 108 RWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFIS--- 184 (430)
Q Consensus 108 ~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~--- 184 (430)
..||++.| .+.++ |.++ ..-.++-.|++++ ++++.+|... ..++..|-.|+++++. +..+||
T Consensus 106 t~lDLShN-qL~Ev---------P~~L-E~AKn~iVLNLS~-N~IetIPn~l--finLtDLLfLDLS~Nr-Le~LPPQ~R 170 (1255)
T KOG0444|consen 106 TILDLSHN-QLREV---------PTNL-EYAKNSIVLNLSY-NNIETIPNSL--FINLTDLLFLDLSNNR-LEMLPPQIR 170 (1255)
T ss_pred eeeecchh-hhhhc---------chhh-hhhcCcEEEEccc-CccccCCchH--HHhhHhHhhhccccch-hhhcCHHHH
Confidence 99999988 57776 5665 5666777788876 4666676543 3456666777777654 666663
Q ss_pred --CCceEEEecCCCCCccc-----CCCceeeec------CcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcc
Q 014145 185 --NSVVHVTTDNKEPEKLT-----SEENFFLTD------QIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFA 251 (430)
Q Consensus 185 --~~L~~L~l~~~~~~~~~-----~~~~l~~~~------~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~ 251 (430)
..|+.|.+++|++.... +++++.+++ +...+-.++..+.+|..++++. +++..++... -.++
T Consensus 171 RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecl----y~l~ 245 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECL----YKLR 245 (1255)
T ss_pred HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHH----hhhh
Confidence 46777777777754422 111111110 0111112223334444444443 2333332111 3344
Q ss_pred cccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCccee
Q 014145 252 NLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVV 331 (430)
Q Consensus 252 ~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 331 (430)
+|+.|++++. .++++......-.+|++|+++. ++++.+|. .+..++.|+.|.+.+.. +. .++.+.+...
T Consensus 246 ~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~--avcKL~kL~kLy~n~Nk-L~------FeGiPSGIGK 314 (1255)
T KOG0444|consen 246 NLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTVLPD--AVCKLTKLTKLYANNNK-LT------FEGIPSGIGK 314 (1255)
T ss_pred hhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhccchH--HHhhhHHHHHHHhccCc-cc------ccCCccchhh
Confidence 4444444442 3333322222333444444444 23444443 23344555555554322 11 1233334444
Q ss_pred ecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeeeccccC
Q 014145 332 FEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 332 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 394 (430)
+..|+.+...+ .+|.-++.+ .+.|+.|+.|.+.+ ..+-++|.+.--++.|+.|+++..+
T Consensus 315 L~~Levf~aan-N~LElVPEg--lcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 315 LIQLEVFHAAN-NKLELVPEG--LCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhhHHHHhhc-cccccCchh--hhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCc
Confidence 56666666665 467777764 45699999999954 5666899888788999999997644
No 9
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.39 E-value=3.8e-15 Score=138.60 Aligned_cols=284 Identities=16% Similarity=0.178 Sum_probs=121.2
Q ss_pred CcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCCc
Q 014145 80 NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFT 159 (430)
Q Consensus 80 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~ 159 (430)
.|+.|.+++|..........+...++++++|.+.+|..+++-- -.++...+++|++|++..|..+.......
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s--------~~sla~~C~~l~~l~L~~c~~iT~~~Lk~ 210 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSS--------LLSLARYCRKLRHLNLHSCSSITDVSLKY 210 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHH--------HHHHHHhcchhhhhhhcccchhHHHHHHH
Confidence 3455555555444333333334455555555555554333210 01223444555555555554444332110
Q ss_pred cccccCCCccEEEeccCCCccccc-------CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEeccc
Q 014145 160 ENIIEMPELRYLAIENCPDMETFI-------SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSR 232 (430)
Q Consensus 160 ~~~~~~~~L~~L~l~~c~~l~~~~-------~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (430)
....+++|++++++-|+.++... ...++.+...||.-.+.-. +....+..+.+..+++..
T Consensus 211 -la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~------------l~~~~~~~~~i~~lnl~~ 277 (483)
T KOG4341|consen 211 -LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEA------------LLKAAAYCLEILKLNLQH 277 (483)
T ss_pred -HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHH------------HHHHhccChHhhccchhh
Confidence 12345555555555555444321 1223333333443221110 001122334455555555
Q ss_pred CCCceeeccCCchhhhhcccccEEEeecCCCccccc-CCc-ccCCCCCEEEEccCCCcccccCchhhccccccceEeecc
Q 014145 233 LHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TPS-WHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIAD 310 (430)
Q Consensus 233 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~l-~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~ 310 (430)
|..+++.. .+.+...+..|+.|+.++|......+ ..+ ...++|+.+.+..|..+.+.....+..+++.|+.+++.+
T Consensus 278 c~~lTD~~--~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 278 CNQLTDED--LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE 355 (483)
T ss_pred hccccchH--HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence 54444421 22222445555555555555443221 112 244556666666665555544333344555555555555
Q ss_pred ccccchhhcccccccCCcceeecccceEeccCCCCCceecc---CCcccCCCCccEEeeccCCCCcccC-CCCcCCCCce
Q 014145 311 CKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCL---GNYALEFPSLEHVVVRQCPTMKIFS-QGVVDAPKLN 386 (430)
Q Consensus 311 c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~---~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~ 386 (430)
|..+.+-. .......++.|+.|.+.+|...++-.+ .........|+.+.+.+|+.++.-. .....+++|+
T Consensus 356 ~~~~~d~t------L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le 429 (483)
T KOG4341|consen 356 CGLITDGT------LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLE 429 (483)
T ss_pred cceehhhh------HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccc
Confidence 54433220 001112255555555555555444311 1112234455555555555554322 1233455555
Q ss_pred eeeccc
Q 014145 387 KVKPTE 392 (430)
Q Consensus 387 ~l~l~~ 392 (430)
++++.+
T Consensus 430 ri~l~~ 435 (483)
T KOG4341|consen 430 RIELID 435 (483)
T ss_pred eeeeec
Confidence 555533
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.36 E-value=8.4e-12 Score=129.53 Aligned_cols=254 Identities=18% Similarity=0.138 Sum_probs=148.8
Q ss_pred CCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCC
Q 014145 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 130 (430)
..-..|+++++. ++.++.. ..++|+.|.+.++ +++.++. .+++|++|++++| .++.+
T Consensus 201 ~~~~~LdLs~~~-LtsLP~~------l~~~L~~L~L~~N-~Lt~LP~-----lp~~Lk~LdLs~N-~LtsL--------- 257 (788)
T PRK15387 201 NGNAVLNVGESG-LTTLPDC------LPAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSL--------- 257 (788)
T ss_pred CCCcEEEcCCCC-CCcCCcc------hhcCCCEEEccCC-cCCCCCC-----CCCCCcEEEecCC-ccCcc---------
Confidence 356678888775 6654332 2357888888885 5666433 2578999999887 56665
Q ss_pred ccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc--CCCceEEEecCCCCCcccCCCceee
Q 014145 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFL 208 (430)
Q Consensus 131 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~ 208 (430)
|. ..++|+.|++.++ .+..++. ...+|+.|.+.++. ++.++ +++|+.|++++|.+..+.
T Consensus 258 P~----lp~sL~~L~Ls~N-~L~~Lp~------lp~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~N~L~~Lp------- 318 (788)
T PRK15387 258 PV----LPPGLLELSIFSN-PLTHLPA------LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQLASLP------- 318 (788)
T ss_pred cC----cccccceeeccCC-chhhhhh------chhhcCEEECcCCc-cccccccccccceeECCCCccccCC-------
Confidence 32 2367888888875 4555543 23567888888764 66665 567888888888776654
Q ss_pred ecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCc
Q 014145 209 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGL 288 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l 288 (430)
.....|+.|+++++ +++.++ ...++|+.|+++++ .+..+|.. ..+|+.|+++++ .+
T Consensus 319 -----------~lp~~L~~L~Ls~N-~L~~LP-------~lp~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N-~L 374 (788)
T PRK15387 319 -----------ALPSELCKLWAYNN-QLTSLP-------TLPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN-RL 374 (788)
T ss_pred -----------CCcccccccccccC-cccccc-------ccccccceEecCCC-ccCCCCCC---Ccccceehhhcc-cc
Confidence 12235666666653 444432 12246677777663 45555432 235566666553 34
Q ss_pred ccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeecc
Q 014145 289 INVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ 368 (430)
Q Consensus 289 ~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~ 368 (430)
..++. ..++|+.|+++++. +..++. .+++|+.|+++++ .++.++.. ..+|+.|++++
T Consensus 375 ~~LP~-----l~~~L~~LdLs~N~-Lt~LP~-----------l~s~L~~LdLS~N-~LssIP~l-----~~~L~~L~Ls~ 431 (788)
T PRK15387 375 TSLPA-----LPSGLKELIVSGNR-LTSLPV-----------LPSELKELMVSGN-RLTSLPML-----PSGLLSLSVYR 431 (788)
T ss_pred ccCcc-----cccccceEEecCCc-ccCCCC-----------cccCCCEEEccCC-cCCCCCcc-----hhhhhhhhhcc
Confidence 44442 12356666666542 333321 1345666666664 45555421 23566666655
Q ss_pred CCCCcccCCCCcCCCCceeeeccccC
Q 014145 369 CPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 369 c~~l~~~~~~~~~~~~L~~l~l~~~~ 394 (430)
+ +++.+|..+..+++|+.|++.+++
T Consensus 432 N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 432 N-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred C-cccccChHHhhccCCCeEECCCCC
Confidence 3 455666555556666666665543
No 11
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.34 E-value=9.9e-15 Score=135.85 Aligned_cols=310 Identities=18% Similarity=0.173 Sum_probs=214.5
Q ss_pred CCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCC
Q 014145 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 130 (430)
-.|+.|.++++.....-.... ....+|+++.|.+.+|.++++..-..+.+.|++|++|++..|..++...-
T Consensus 138 g~lk~LSlrG~r~v~~sslrt--~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L------- 208 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRT--FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL------- 208 (483)
T ss_pred cccccccccccccCCcchhhH--HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH-------
Confidence 478999999988655422222 12568999999999999888765556678899999999999987766521
Q ss_pred ccCcCCcCCccceeecCCccccccccCCc-cccccCCCccEEEeccCCCccccc-------CCCceEEEecCCCCCcccC
Q 014145 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFT-ENIIEMPELRYLAIENCPDMETFI-------SNSVVHVTTDNKEPEKLTS 202 (430)
Q Consensus 131 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~~~-------~~~L~~L~l~~~~~~~~~~ 202 (430)
..+...+++|++|+++.|+.+..- +. .....+..++++...+|..+..-. ..-+..+++..|...+-
T Consensus 209 -k~la~gC~kL~~lNlSwc~qi~~~--gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD-- 283 (483)
T KOG4341|consen 209 -KYLAEGCRKLKYLNLSWCPQISGN--GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTD-- 283 (483)
T ss_pred -HHHHHhhhhHHHhhhccCchhhcC--cchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccc--
Confidence 123578899999999999887651 10 013456667788777887655432 23355556556653221
Q ss_pred CCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCccccc--CCcccCCCCCEE
Q 014145 203 EENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV--TPSWHLENLATL 280 (430)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~l~~l~~L~~L 280 (430)
..++.....+.+|+.|+.++|..+.+.....+ ....++|+.|.+.+|..++..- ....+.+.|+.+
T Consensus 284 ----------~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL--g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l 351 (483)
T KOG4341|consen 284 ----------EDLWLIACGCHALQVLCYSSCTDITDEVLWAL--GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERL 351 (483)
T ss_pred ----------hHHHHHhhhhhHhhhhcccCCCCCchHHHHHH--hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhh
Confidence 11233345678999999999988766543333 2677999999999998766431 122378899999
Q ss_pred EEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCC
Q 014145 281 EVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPS 360 (430)
Q Consensus 281 ~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~ 360 (430)
++.+|-...+........+++.|+.|.+++|..+.+... ............|..+++.+||.+++-... ....+++
T Consensus 352 ~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi---~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~~ 427 (483)
T KOG4341|consen 352 DLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI---RHLSSSSCSLEGLEVLELDNCPLITDATLE-HLSICRN 427 (483)
T ss_pred cccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh---hhhhhccccccccceeeecCCCCchHHHHH-HHhhCcc
Confidence 999998777653333466899999999999988776521 111222234778999999999998875542 2335899
Q ss_pred ccEEeeccCCCCcccC--CCCcCCCCceeeec
Q 014145 361 LEHVVVRQCPTMKIFS--QGVVDAPKLNKVKP 390 (430)
Q Consensus 361 L~~L~l~~c~~l~~~~--~~~~~~~~L~~l~l 390 (430)
|+.+++.+|..+++-+ .-..++|+++....
T Consensus 428 Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 428 LERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred cceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 9999999999886533 22446777776555
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.31 E-value=1.6e-11 Score=127.51 Aligned_cols=244 Identities=17% Similarity=0.113 Sum_probs=167.5
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
.+..+|..+. ++|+.|++.++. ++.++ . ..++|++|+++++ ++..+++. .++|++|++++|. +
T Consensus 212 ~LtsLP~~l~--~~L~~L~L~~N~-Lt~LP------~-lp~~Lk~LdLs~N-~LtsLP~l-----p~sL~~L~Ls~N~-L 274 (788)
T PRK15387 212 GLTTLPDCLP--AHITTLVIPDNN-LTSLP------A-LPPELRTLEVSGN-QLTSLPVL-----PPGLLELSIFSNP-L 274 (788)
T ss_pred CCCcCCcchh--cCCCEEEccCCc-CCCCC------C-CCCCCcEEEecCC-ccCcccCc-----ccccceeeccCCc-h
Confidence 3445665543 489999999865 77632 2 3589999999997 56665432 5689999999984 6
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc--CCCceEEEecCCC
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKE 196 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~ 196 (430)
..+ |. ...+|+.|+++++ .+..+|. ..++|++|+++++. ++.++ +..|+.|.+++|.
T Consensus 275 ~~L---------p~----lp~~L~~L~Ls~N-~Lt~LP~------~p~~L~~LdLS~N~-L~~Lp~lp~~L~~L~Ls~N~ 333 (788)
T PRK15387 275 THL---------PA----LPSGLCKLWIFGN-QLTSLPV------LPPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQ 333 (788)
T ss_pred hhh---------hh----chhhcCEEECcCC-ccccccc------cccccceeECCCCc-cccCCCCcccccccccccCc
Confidence 555 22 2357888999885 5666643 24789999998874 66665 5678889998888
Q ss_pred CCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCC
Q 014145 197 PEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLEN 276 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~ 276 (430)
+..+. ....+|+.|++++ ++++.++ ...++|+.|++.++ .+..+|.. ..+
T Consensus 334 L~~LP------------------~lp~~Lq~LdLS~-N~Ls~LP-------~lp~~L~~L~Ls~N-~L~~LP~l---~~~ 383 (788)
T PRK15387 334 LTSLP------------------TLPSGLQELSVSD-NQLASLP-------TLPSELYKLWAYNN-RLTSLPAL---PSG 383 (788)
T ss_pred ccccc------------------ccccccceEecCC-CccCCCC-------CCCcccceehhhcc-ccccCccc---ccc
Confidence 77654 1235789999988 4666654 23457888888774 56666643 357
Q ss_pred CCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCccc
Q 014145 277 LATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYAL 356 (430)
Q Consensus 277 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~ 356 (430)
|+.|+++++ .+..+|. ..++|+.|+++++. +..++. .+.+|+.|+++++ +++.++. ...
T Consensus 384 L~~LdLs~N-~Lt~LP~-----l~s~L~~LdLS~N~-LssIP~-----------l~~~L~~L~Ls~N-qLt~LP~--sl~ 442 (788)
T PRK15387 384 LKELIVSGN-RLTSLPV-----LPSELKELMVSGNR-LTSLPM-----------LPSGLLSLSVYRN-QLTRLPE--SLI 442 (788)
T ss_pred cceEEecCC-cccCCCC-----cccCCCEEEccCCc-CCCCCc-----------chhhhhhhhhccC-cccccCh--HHh
Confidence 889999885 4666553 13578899998864 444431 1456788888874 6777765 234
Q ss_pred CCCCccEEeeccCCC
Q 014145 357 EFPSLEHVVVRQCPT 371 (430)
Q Consensus 357 ~~~~L~~L~l~~c~~ 371 (430)
.+++|+.|++.+++-
T Consensus 443 ~L~~L~~LdLs~N~L 457 (788)
T PRK15387 443 HLSSETTVNLEGNPL 457 (788)
T ss_pred hccCCCeEECCCCCC
Confidence 578889999988753
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.23 E-value=1.8e-13 Score=126.82 Aligned_cols=310 Identities=17% Similarity=0.190 Sum_probs=181.6
Q ss_pred chhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCC
Q 014145 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 117 (430)
+-+..+|.+++.+.+|..|+++.++ +..++. . ..+.-|+.+.++. +..+..|-.+..++++|.+||+.+| +
T Consensus 193 N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPe-f----~gcs~L~Elh~g~--N~i~~lpae~~~~L~~l~vLDLRdN-k 263 (565)
T KOG0472|consen 193 NLLETLPPELGGLESLELLYLRRNK-IRFLPE-F----PGCSLLKELHVGE--NQIEMLPAEHLKHLNSLLVLDLRDN-K 263 (565)
T ss_pred hhhhcCChhhcchhhhHHHHhhhcc-cccCCC-C----CccHHHHHHHhcc--cHHHhhHHHHhcccccceeeecccc-c
Confidence 4566677778888888888877665 544331 1 3566777777776 4455556666778888888888887 5
Q ss_pred ccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc-----C------CC
Q 014145 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----S------NS 186 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~------~~ 186 (430)
++++ |+++ ..+++|++|++++ ..+..+|.. .+++ .|+.|.+.++| ++.+- . ..
T Consensus 264 lke~---------Pde~-clLrsL~rLDlSN-N~is~Lp~s---Lgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKy 327 (565)
T KOG0472|consen 264 LKEV---------PDEI-CLLRSLERLDLSN-NDISSLPYS---LGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKY 327 (565)
T ss_pred cccC---------chHH-HHhhhhhhhcccC-CccccCCcc---cccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHH
Confidence 7777 6776 7778888888887 466667665 6677 78888887777 32211 0 01
Q ss_pred ceE----EEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeec--
Q 014145 187 VVH----VTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISE-- 260 (430)
Q Consensus 187 L~~----L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~-- 260 (430)
|+. =.++.....+.... +.-...|.+.....+.+.|++++ .+++.++.+.|.+. .-.-....+++.
T Consensus 328 Lrs~~~~dglS~se~~~e~~~------t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~-~~~~Vt~VnfskNq 399 (565)
T KOG0472|consen 328 LRSKIKDDGLSQSEGGTETAM------TLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAA-KSEIVTSVNFSKNQ 399 (565)
T ss_pred HHHhhccCCCCCCcccccccC------CCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHh-hhcceEEEecccch
Confidence 111 00111110000000 00011222233344667777776 35666666555331 112233344443
Q ss_pred ---------------------CCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhc
Q 014145 261 ---------------------CSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQ 319 (430)
Q Consensus 261 ---------------------c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 319 (430)
.+.+..+|..+..+++|..|++++. -+.++|.. .+.+..|+.|+++... ...++.
T Consensus 400 L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e--~~~lv~Lq~LnlS~Nr-Fr~lP~ 475 (565)
T KOG0472|consen 400 LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEE--MGSLVRLQTLNLSFNR-FRMLPE 475 (565)
T ss_pred HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchh--hhhhhhhheecccccc-cccchH
Confidence 2233334445567778888888773 46677653 4566678888887652 222210
Q ss_pred ccccccCCccee-ecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeeeccccCCC
Q 014145 320 LQVGEEAKGCVV-FEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDG 396 (430)
Q Consensus 320 ~~~~~~~~~~~~-~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~~~ 396 (430)
+.. +..++.+-.+ -.++.+++.. +...+.+|..|++.+ ..++.+|.+...+.+|+++++.|.+..
T Consensus 476 ---------~~y~lq~lEtllas-~nqi~~vd~~-~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 476 ---------CLYELQTLETLLAS-NNQIGSVDPS-GLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ---------HHhhHHHHHHHHhc-cccccccChH-HhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCccC
Confidence 000 1223333333 3467777653 345688899999976 577899999999999999999876533
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.20 E-value=3.2e-12 Score=129.81 Aligned_cols=214 Identities=14% Similarity=0.140 Sum_probs=131.4
Q ss_pred cCCCccEEEeccCCCccccc---CCCceEEEecCCCCCccc-------CCCceeee------------------------
Q 014145 164 EMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLT-------SEENFFLT------------------------ 209 (430)
Q Consensus 164 ~~~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~-------~~~~l~~~------------------------ 209 (430)
.-++|+.|...+|+-.+... |.+++.++++.+....+. +++.+...
T Consensus 217 ~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred cCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhh
Confidence 34566666666666443332 567777777766543322 23333221
Q ss_pred cCcccccccCCCCCCCCEEecccCCCceeeccCCchhh----------------------hhcccccEEEeecCCCcccc
Q 014145 210 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESN----------------------KAFANLIRLKISECSKLQKL 267 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~----------------------~~l~~L~~L~l~~c~~l~~l 267 (430)
++.+-+-...+.++.|++|++.. +++.+++...+.+. ..++.|+.|.+.+...-...
T Consensus 297 nel~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 297 NELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred hhhhhCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence 02333334456678889999887 36666654333211 33455555555554333334
Q ss_pred cCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCc
Q 014145 268 VTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLT 347 (430)
Q Consensus 268 ~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 347 (430)
...+.++.+|+.|++++. .+..+|.. ...+++.|+.|++++. +++.++. ....+++|++|...+ ..+.
T Consensus 376 ~p~l~~~~hLKVLhLsyN-rL~~fpas-~~~kle~LeeL~LSGN-kL~~Lp~--------tva~~~~L~tL~ahs-N~l~ 443 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYN-RLNSFPAS-KLRKLEELEELNLSGN-KLTTLPD--------TVANLGRLHTLRAHS-NQLL 443 (1081)
T ss_pred hhhhccccceeeeeeccc-ccccCCHH-HHhchHHhHHHhcccc-hhhhhhH--------HHHhhhhhHHHhhcC-Ccee
Confidence 445778899999999984 57777764 3678899999999984 5666652 222377888877665 3677
Q ss_pred eeccCCcccCCCCccEEeeccCCCCcccCCC-CcCCCCceeeeccccC
Q 014145 348 SFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEEE 394 (430)
Q Consensus 348 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~l~l~~~~ 394 (430)
.+|. ...+++|+.++++ |.+++.+-.. ..++|+|++++++|..
T Consensus 444 ~fPe---~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 444 SFPE---LAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred echh---hhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCc
Confidence 7772 3457889999994 5666543322 2245899999998865
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.13 E-value=2.1e-10 Score=119.70 Aligned_cols=244 Identities=15% Similarity=0.143 Sum_probs=146.4
Q ss_pred CCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCC
Q 014145 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 130 (430)
.+...|++++.. ++.++. .-.++|+.|+++++ ++..+ |..+ ..+|++|++++| .+..+
T Consensus 178 ~~~~~L~L~~~~-LtsLP~------~Ip~~L~~L~Ls~N-~LtsL-P~~l---~~nL~~L~Ls~N-~LtsL--------- 235 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPA------CIPEQITTLILDNN-ELKSL-PENL---QGNIKTLYANSN-QLTSI--------- 235 (754)
T ss_pred cCceEEEeCCCC-cCcCCc------ccccCCcEEEecCC-CCCcC-Chhh---ccCCCEEECCCC-ccccC---------
Confidence 467888888765 665332 22357899999886 56664 3332 358999999987 46665
Q ss_pred ccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc---CCCceEEEecCCCCCcccCCCcee
Q 014145 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSEENFF 207 (430)
Q Consensus 131 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~~~l~ 207 (430)
|..+ .++|+.|+++++ .+..+|.. + ..+|+.|++.++ +++.+| +.+|+.|++++|.+..+.
T Consensus 236 P~~l---~~~L~~L~Ls~N-~L~~LP~~---l--~s~L~~L~Ls~N-~L~~LP~~l~~sL~~L~Ls~N~Lt~LP------ 299 (754)
T PRK15370 236 PATL---PDTIQEMELSIN-RITELPER---L--PSALQSLDLFHN-KISCLPENLPEELRYLSVYDNSIRTLP------ 299 (754)
T ss_pred Chhh---hccccEEECcCC-ccCcCChh---H--hCCCCEEECcCC-ccCccccccCCCCcEEECCCCccccCc------
Confidence 4433 347888999886 45566543 2 247888888755 466655 457888888888766544
Q ss_pred eecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCC
Q 014145 208 LTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHG 287 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 287 (430)
....++|+.|+++++ .++.++. ...++|+.|++.+| .+..+|..+ .++|+.|++++| .
T Consensus 300 -----------~~lp~sL~~L~Ls~N-~Lt~LP~------~l~~sL~~L~Ls~N-~Lt~LP~~l--~~sL~~L~Ls~N-~ 357 (754)
T PRK15370 300 -----------AHLPSGITHLNVQSN-SLTALPE------TLPPGLKTLEAGEN-ALTSLPASL--PPELQVLDVSKN-Q 357 (754)
T ss_pred -----------ccchhhHHHHHhcCC-ccccCCc------cccccceeccccCC-ccccCChhh--cCcccEEECCCC-C
Confidence 112246777777764 4554432 22357777777776 355565433 257777777776 3
Q ss_pred cccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCC--cccCCCCccEEe
Q 014145 288 LINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGN--YALEFPSLEHVV 365 (430)
Q Consensus 288 l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~--~~~~~~~L~~L~ 365 (430)
+..+|.. + .+.|++|++++|. +..++.. ....|+.|+++++ +++.++... ....++++..+.
T Consensus 358 L~~LP~~--l--p~~L~~LdLs~N~-Lt~LP~~----------l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~ 421 (754)
T PRK15370 358 ITVLPET--L--PPTITTLDVSRNA-LTNLPEN----------LPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRII 421 (754)
T ss_pred CCcCChh--h--cCCcCEEECCCCc-CCCCCHh----------HHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEE
Confidence 5544421 1 2567777777763 4444311 1235667777664 455554311 111246667777
Q ss_pred eccCC
Q 014145 366 VRQCP 370 (430)
Q Consensus 366 l~~c~ 370 (430)
+.+.+
T Consensus 422 L~~Np 426 (754)
T PRK15370 422 VEYNP 426 (754)
T ss_pred eeCCC
Confidence 76654
No 16
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.11 E-value=4.5e-11 Score=126.61 Aligned_cols=126 Identities=22% Similarity=0.320 Sum_probs=89.3
Q ss_pred hhcccccEEEeecCCCcccccCC-----ccc-CCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhccc
Q 014145 248 KAFANLIRLKISECSKLQKLVTP-----SWH-LENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQ 321 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l~~l~~~-----l~~-l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 321 (430)
..+.+|+.|.+.+|...+....+ ... |+++..+.+.+|..++++.+ ..-.|+|+.|.+..|+.+++++...
T Consensus 714 ~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~---~~f~~~L~~l~l~~~~~~e~~i~~~ 790 (889)
T KOG4658|consen 714 GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW---LLFAPHLTSLSLVSCRLLEDIIPKL 790 (889)
T ss_pred ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccch---hhccCcccEEEEecccccccCCCHH
Confidence 67889999999998775432211 112 66788888888988888764 3345899999999999988876543
Q ss_pred cccc--CCcceeecccceE-eccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCC
Q 014145 322 VGEE--AKGCVVFEELGYL-GLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG 378 (430)
Q Consensus 322 ~~~~--~~~~~~~~~L~~L-~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 378 (430)
.... ......|+++..+ .+.+.+.+..++... ..++.|+.+.+..|++++.+|..
T Consensus 791 k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~--l~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 791 KALLELKELILPFNKLEGLRMLCSLGGLPQLYWLP--LSFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred HHhhhcccEEecccccccceeeecCCCCceeEecc--cCccchhheehhcCcccccCccc
Confidence 1111 1123457778877 477777777777633 34677999999999999988765
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.11 E-value=1.4e-10 Score=121.06 Aligned_cols=234 Identities=18% Similarity=0.201 Sum_probs=153.7
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
+..+|..+. ++|+.|+++++. ++.++. ..+++|+.|++++| ++..+ |..+ ..+|+.|++++|. +.
T Consensus 190 LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~------~l~~nL~~L~Ls~N-~LtsL-P~~l---~~~L~~L~Ls~N~-L~ 254 (754)
T PRK15370 190 LTTIPACIP--EQITTLILDNNE-LKSLPE------NLQGNIKTLYANSN-QLTSI-PATL---PDTIQEMELSINR-IT 254 (754)
T ss_pred cCcCCcccc--cCCcEEEecCCC-CCcCCh------hhccCCCEEECCCC-ccccC-Chhh---hccccEEECcCCc-cC
Confidence 334554432 479999999875 776433 34579999999987 46664 4332 3579999999984 55
Q ss_pred EecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc---CCCceEEEecCCC
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKE 196 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~ 196 (430)
.+ |..+ ..+|+.|+++++ .+..+|.. + .++|+.|++++|. ++.++ +.+|+.|++++|.
T Consensus 255 ~L---------P~~l---~s~L~~L~Ls~N-~L~~LP~~---l--~~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~ 315 (754)
T PRK15370 255 EL---------PERL---PSALQSLDLFHN-KISCLPEN---L--PEELRYLSVYDNS-IRTLPAHLPSGITHLNVQSNS 315 (754)
T ss_pred cC---------ChhH---hCCCCEEECcCC-ccCccccc---c--CCCCcEEECCCCc-cccCcccchhhHHHHHhcCCc
Confidence 65 4443 257999999864 66667543 2 2589999999874 77665 4578899999988
Q ss_pred CCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCC
Q 014145 197 PEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLEN 276 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~ 276 (430)
+..+. ....++|+.|+++++ .++.++. ..+++|+.|+++++ .+..+|..+ .++
T Consensus 316 Lt~LP-----------------~~l~~sL~~L~Ls~N-~Lt~LP~------~l~~sL~~L~Ls~N-~L~~LP~~l--p~~ 368 (754)
T PRK15370 316 LTALP-----------------ETLPPGLKTLEAGEN-ALTSLPA------SLPPELQVLDVSKN-QITVLPETL--PPT 368 (754)
T ss_pred cccCC-----------------ccccccceeccccCC-ccccCCh------hhcCcccEEECCCC-CCCcCChhh--cCC
Confidence 77654 123468999999886 5665532 23468999999987 456666543 368
Q ss_pred CCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCC
Q 014145 277 LATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLP 344 (430)
Q Consensus 277 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 344 (430)
|+.|++++| .+..+|.. + ...|+.|+++++. +..++. ..+.-....+.+..|.+.+.+
T Consensus 369 L~~LdLs~N-~Lt~LP~~--l--~~sL~~LdLs~N~-L~~LP~----sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 369 ITTLDVSRN-ALTNLPEN--L--PAALQIMQASRNN-LVRLPE----SLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred cCEEECCCC-cCCCCCHh--H--HHHHHHHhhccCC-cccCch----hHHHHhhcCCCccEEEeeCCC
Confidence 999999987 46666542 1 1368888888753 444431 111111124666777776644
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.07 E-value=6.5e-13 Score=123.23 Aligned_cols=240 Identities=17% Similarity=0.153 Sum_probs=159.0
Q ss_pred HHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcc
Q 014145 101 IRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDME 180 (430)
Q Consensus 101 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 180 (430)
+..+..|.+|.++++. +... |..+ +.+..++.++.+.. ++..+|.. +.+.++|.++.+.+.. +.
T Consensus 64 l~nL~~l~vl~~~~n~-l~~l---------p~ai-g~l~~l~~l~vs~n-~ls~lp~~---i~s~~~l~~l~~s~n~-~~ 127 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNK-LSQL---------PAAI-GELEALKSLNVSHN-KLSELPEQ---IGSLISLVKLDCSSNE-LK 127 (565)
T ss_pred hhcccceeEEEeccch-hhhC---------CHHH-HHHHHHHHhhcccc-hHhhccHH---Hhhhhhhhhhhccccc-ee
Confidence 4445555555555553 2222 3333 44455555555542 34444433 4455555555555443 33
Q ss_pred ccc-----CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccE
Q 014145 181 TFI-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIR 255 (430)
Q Consensus 181 ~~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~ 255 (430)
.++ ...+.+++.++|.+.+.+ .+.+.+.+|..|++.+ ++++.+++.. -.++.|++
T Consensus 128 el~~~i~~~~~l~dl~~~~N~i~slp---------------~~~~~~~~l~~l~~~~-n~l~~l~~~~----i~m~~L~~ 187 (565)
T KOG0472|consen 128 ELPDSIGRLLDLEDLDATNNQISSLP---------------EDMVNLSKLSKLDLEG-NKLKALPENH----IAMKRLKH 187 (565)
T ss_pred ecCchHHHHhhhhhhhccccccccCc---------------hHHHHHHHHHHhhccc-cchhhCCHHH----HHHHHHHh
Confidence 222 234555555666555443 2345566788888887 4666665544 34889999
Q ss_pred EEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeeccc
Q 014145 256 LKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEEL 335 (430)
Q Consensus 256 L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L 335 (430)
|+... +.++++|..++.+.+|..|++.. +++..+|. +++|..|.+|+++. ..++.+++. ....++++
T Consensus 188 ld~~~-N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPe---f~gcs~L~Elh~g~-N~i~~lpae-------~~~~L~~l 254 (565)
T KOG0472|consen 188 LDCNS-NLLETLPPELGGLESLELLYLRR-NKIRFLPE---FPGCSLLKELHVGE-NQIEMLPAE-------HLKHLNSL 254 (565)
T ss_pred cccch-hhhhcCChhhcchhhhHHHHhhh-cccccCCC---CCccHHHHHHHhcc-cHHHhhHHH-------Hhcccccc
Confidence 98876 47889999999999999999988 46778875 67888999999976 456655532 33458899
Q ss_pred ceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeeeccccC
Q 014145 336 GYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 336 ~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 394 (430)
..|++++ .++++++.+.+. +.+|++|++++ ..+..+|.....+ .|+.+.+.|.+
T Consensus 255 ~vLDLRd-Nklke~Pde~cl--LrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 255 LVLDLRD-NKLKEVPDEICL--LRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred eeeeccc-cccccCchHHHH--hhhhhhhcccC-CccccCCcccccc-eeeehhhcCCc
Confidence 9999998 489999986554 89999999987 4777888877666 88888887654
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.92 E-value=9.1e-11 Score=119.48 Aligned_cols=115 Identities=22% Similarity=0.309 Sum_probs=72.5
Q ss_pred ccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCccccc
Q 014145 213 QPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVL 292 (430)
Q Consensus 213 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~ 292 (430)
+..|..+..+++|+-|++++ +.+.+++...+ ..+..|++|++++ +.++.+|..+..+..|++|...+ +.+..+|
T Consensus 373 d~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~---~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP 446 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSY-NRLNSFPASKL---RKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFP 446 (1081)
T ss_pred ccchhhhccccceeeeeecc-cccccCCHHHH---hchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-Cceeech
Confidence 34444556677777777777 35666655544 6667777777777 46777776666777777776655 3455665
Q ss_pred CchhhccccccceEeeccccccchhhcccccccCCcceee-cccceEeccCCCC
Q 014145 293 TLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVF-EELGYLGLDCLPS 345 (430)
Q Consensus 293 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~ 345 (430)
. +..+++|+.+|++ |+.+.++.... ... |.|++|++++.+.
T Consensus 447 e---~~~l~qL~~lDlS-~N~L~~~~l~~--------~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 447 E---LAQLPQLKVLDLS-CNNLSEVTLPE--------ALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred h---hhhcCcceEEecc-cchhhhhhhhh--------hCCCcccceeeccCCcc
Confidence 3 4567777788875 45555544221 112 6777777777654
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.85 E-value=2e-09 Score=114.22 Aligned_cols=290 Identities=19% Similarity=0.256 Sum_probs=171.1
Q ss_pred CCCCcceeecccccC-CeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccc
Q 014145 49 GFRDIKYLQLGHFPR-LQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 127 (430)
Q Consensus 49 ~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 127 (430)
..++|++|-+.+... +..+..+. ...+|.|++|++++|..+..+|.. ++.+.+|++|++++. .+..+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~f---f~~m~~LrVLDLs~~~~l~~LP~~--I~~Li~LryL~L~~t-~I~~L------ 610 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEF---FRSLPLLRVLDLSGNSSLSKLPSS--IGELVHLRYLDLSDT-GISHL------ 610 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHH---HhhCcceEEEECCCCCccCcCChH--HhhhhhhhcccccCC-Ccccc------
Confidence 345788887776542 22211100 145888999999998877775443 778999999999886 56666
Q ss_pred cCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC-Cccccc------CCCceEEEecCCCC---
Q 014145 128 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP-DMETFI------SNSVVHVTTDNKEP--- 197 (430)
Q Consensus 128 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~-~l~~~~------~~~L~~L~l~~~~~--- 197 (430)
|.++ +++.+|.+|++..+..+..++.. ...+++|++|.+.... ...... ..+|+.+.++....
T Consensus 611 ---P~~l-~~Lk~L~~Lnl~~~~~l~~~~~i---~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~ 683 (889)
T KOG4658|consen 611 ---PSGL-GNLKKLIYLNLEVTGRLESIPGI---LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLL 683 (889)
T ss_pred ---chHH-HHHHhhheeccccccccccccch---hhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhH
Confidence 7787 88889999999888777766432 4558899999886543 111111 23444444433332
Q ss_pred CcccCCCcee-------ee-cCcccccccCCCCCCCCEEecccCCCceee--ccCCchhhhh-cccccEEEeecCCCccc
Q 014145 198 EKLTSEENFF-------LT-DQIQPLFDEKVAFPQLRYLELSRLHKVQHL--WKENDESNKA-FANLIRLKISECSKLQK 266 (430)
Q Consensus 198 ~~~~~~~~l~-------~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~~-l~~L~~L~l~~c~~l~~ 266 (430)
.......++. +. ........+.+.+.+|++|.+.+|...+.. +.+.... .. ++++..+.+.+|..+..
T Consensus 684 e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~-~~~f~~l~~~~~~~~~~~r~ 762 (889)
T KOG4658|consen 684 EDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIV-LLCFPNLSKVSILNCHMLRD 762 (889)
T ss_pred hhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccch-hhhHHHHHHHHhhccccccc
Confidence 1111111111 00 123444456778899999999998664321 1111111 22 56777777778766665
Q ss_pred ccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEee-----------ccccccchhhcccccccCCcceeeccc
Q 014145 267 LVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKI-----------ADCKMIEQIIQLQVGEEAKGCVVFEEL 335 (430)
Q Consensus 267 l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l-----------~~c~~l~~~~~~~~~~~~~~~~~~~~L 335 (430)
+ .+....++|+.|++..|..+++..+. ...+..+..+.+ .+.+.+.++.. ....+++|
T Consensus 763 l-~~~~f~~~L~~l~l~~~~~~e~~i~~--~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~--------~~l~~~~l 831 (889)
T KOG4658|consen 763 L-TWLLFAPHLTSLSLVSCRLLEDIIPK--LKALLELKELILPFNKLEGLRMLCSLGGLPQLYW--------LPLSFLKL 831 (889)
T ss_pred c-chhhccCcccEEEEecccccccCCCH--HHHhhhcccEEecccccccceeeecCCCCceeEe--------cccCccch
Confidence 4 45567789999999999988877552 233333433222 22222222211 11224556
Q ss_pred ceEeccCCCCCceeccCCcccCCCCccEEeeccC-CCCcccCCC
Q 014145 336 GYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC-PTMKIFSQG 378 (430)
Q Consensus 336 ~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c-~~l~~~~~~ 378 (430)
+.+.+..||++..+ |.+..+.+.+| .++...|.+
T Consensus 832 ~~~~ve~~p~l~~~---------P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 832 EELIVEECPKLGKL---------PLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred hheehhcCcccccC---------ccccccceeccccceeecCCc
Confidence 66666666665544 56677778776 666655554
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.69 E-value=2.1e-09 Score=102.62 Aligned_cols=88 Identities=20% Similarity=0.145 Sum_probs=44.0
Q ss_pred CCCCEEecccCCCceeecc-CCchhhhhcccccEEEeecCCCcc----cccCCcccCCCCCEEEEccCCCcccccCc---
Q 014145 223 PQLRYLELSRLHKVQHLWK-ENDESNKAFANLIRLKISECSKLQ----KLVTPSWHLENLATLEVSKCHGLINVLTL--- 294 (430)
Q Consensus 223 ~~L~~L~l~~~~~l~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~----~l~~~l~~l~~L~~L~l~~c~~l~~l~~~--- 294 (430)
++|+.|++++|. ++.... ........+++|+.|++++|.... .++..+..+++|+.|++++|. +.+....
T Consensus 137 ~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~ 214 (319)
T cd00116 137 PALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALA 214 (319)
T ss_pred CCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHH
Confidence 677888887763 331100 011111344567777777764321 222223344677777777763 3221110
Q ss_pred hhhccccccceEeecccc
Q 014145 295 STSESLVNLGRMKIADCK 312 (430)
Q Consensus 295 ~~~~~l~~L~~L~l~~c~ 312 (430)
..+..+++|++|++++|+
T Consensus 215 ~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 215 ETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHhcccCCCCEEecCCCc
Confidence 123345667777777654
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.68 E-value=9.4e-10 Score=91.16 Aligned_cols=83 Identities=24% Similarity=0.308 Sum_probs=54.7
Q ss_pred CCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCcccccccc
Q 014145 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 77 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
.+.++..|.+++. +++..+|. +..+.+|++|.+++| .++++ |.++ ..+++|+.|++. +..+...|
T Consensus 31 ~~s~ITrLtLSHN-Kl~~vppn--ia~l~nlevln~~nn-qie~l---------p~~i-ssl~klr~lnvg-mnrl~~lp 95 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVVPPN--IAELKNLEVLNLSNN-QIEEL---------PTSI-SSLPKLRILNVG-MNRLNILP 95 (264)
T ss_pred chhhhhhhhcccC-ceeecCCc--HHHhhhhhhhhcccc-hhhhc---------Chhh-hhchhhhheecc-hhhhhcCc
Confidence 3456666667664 34443343 556777777777776 46665 5665 777777777776 45666676
Q ss_pred CCccccccCCCccEEEeccCC
Q 014145 157 NFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~c~ 177 (430)
.+ .+++|.|+.|++.++.
T Consensus 96 rg---fgs~p~levldltynn 113 (264)
T KOG0617|consen 96 RG---FGSFPALEVLDLTYNN 113 (264)
T ss_pred cc---cCCCchhhhhhccccc
Confidence 66 6677888887777654
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.64 E-value=8.9e-09 Score=98.30 Aligned_cols=91 Identities=18% Similarity=0.131 Sum_probs=50.9
Q ss_pred CCCCCCCEEecccCCCceeeccCC-chhhhhcccccEEEeecCCCcc----cccCCcccCCCCCEEEEccCCCcccccCc
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKEN-DESNKAFANLIRLKISECSKLQ----KLVTPSWHLENLATLEVSKCHGLINVLTL 294 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~----~l~~~l~~l~~L~~L~l~~c~~l~~l~~~ 294 (430)
..+++|++|+++++ .++...... ......+++|+.|++++|..-. .+...+..+++|++|++++|. +.+....
T Consensus 162 ~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~ 239 (319)
T cd00116 162 RANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAA 239 (319)
T ss_pred HhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHH
Confidence 44567888888875 343211110 0011334588888888875321 233345567889999999874 4432221
Q ss_pred hhhcc----ccccceEeecccc
Q 014145 295 STSES----LVNLGRMKIADCK 312 (430)
Q Consensus 295 ~~~~~----l~~L~~L~l~~c~ 312 (430)
.+... .+.|++|++++|.
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHhccCCCceEEEccCCC
Confidence 12222 2577777777664
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.5e-08 Score=94.23 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=16.8
Q ss_pred CCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecC
Q 014145 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 77 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 115 (430)
.+.+|+.+.+.+|. +......+....|++++.|+++.|
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~N 156 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRN 156 (505)
T ss_pred hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhh
Confidence 34455555555543 222111123445555555555544
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=3.1e-08 Score=93.59 Aligned_cols=203 Identities=17% Similarity=0.203 Sum_probs=127.4
Q ss_pred CCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccC--chhHHHhcCCCCEEEEecCCCccEeccccc
Q 014145 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAI--PANLIRCLNNLRWLEVRNCDSLEEVLHLEE 126 (430)
Q Consensus 49 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 126 (430)
.+.+|+...+++++ +....... -...+++++.|++++ ++...+ ...++..+|+|+.|.++.|...-..
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~--~~k~~~~v~~LdLS~--NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~----- 188 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEE--YSKILPNVRDLDLSR--NLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI----- 188 (505)
T ss_pred hHHhhhheeecCcc-ccccchhh--hhhhCCcceeecchh--hhHHhHHHHHHHHHhcccchhcccccccccCCc-----
Confidence 46788888888877 55422110 124699999999998 554433 3346788999999999998543222
Q ss_pred ccCCccCcCCcCCccceeecCCccc-cccccCCccccccCCCccEEEeccCCCccccc-----CCCceEEEecCCCCCcc
Q 014145 127 LNADKEHIGPLFPKLFELTLMDLPK-LKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKL 200 (430)
Q Consensus 127 ~~~~~~~l~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~~ 200 (430)
.......+++|+.|.+..|.. +.++... ...||+|+.|.+.++..+.... +..|++|++++|++...
T Consensus 189 ----~s~~~~~l~~lK~L~l~~CGls~k~V~~~---~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~ 261 (505)
T KOG3207|consen 189 ----SSNTTLLLSHLKQLVLNSCGLSWKDVQWI---LLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF 261 (505)
T ss_pred ----cccchhhhhhhheEEeccCCCCHHHHHHH---HHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc
Confidence 111124678999999999863 3333221 5689999999999885333221 56788999999886654
Q ss_pred cCCCceeeecCcccccccCCCCCCCCEEecccCCCceeecc---CCchhhhhcccccEEEeecCCCccccc--CCcccCC
Q 014145 201 TSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWK---ENDESNKAFANLIRLKISECSKLQKLV--TPSWHLE 275 (430)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~l~~l~ 275 (430)
.. +.-.+.++.|..|.++.+ ++.++.. ++......+++|++|++...+. ...+ ..+..++
T Consensus 262 ~~-------------~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I-~~w~sl~~l~~l~ 326 (505)
T KOG3207|consen 262 DQ-------------GYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNI-RDWRSLNHLRTLE 326 (505)
T ss_pred cc-------------ccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCcc-ccccccchhhccc
Confidence 31 123467888888888775 4444321 1111125678888888877543 2111 2334555
Q ss_pred CCCEEEEc
Q 014145 276 NLATLEVS 283 (430)
Q Consensus 276 ~L~~L~l~ 283 (430)
+|+.|.+.
T Consensus 327 nlk~l~~~ 334 (505)
T KOG3207|consen 327 NLKHLRIT 334 (505)
T ss_pred hhhhhhcc
Confidence 66666543
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.42 E-value=1e-08 Score=85.15 Aligned_cols=173 Identities=22% Similarity=0.194 Sum_probs=111.8
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
++.+++ +++...+..+|.+++++ +.-++... ..+.+|+.|++.+. .+.++++. ++++++|+.|.+.-| .+
T Consensus 22 sf~~~~-gLf~~s~ITrLtLSHNK-l~~vppni----a~l~nlevln~~nn-qie~lp~~--issl~klr~lnvgmn-rl 91 (264)
T KOG0617|consen 22 SFEELP-GLFNMSNITRLTLSHNK-LTVVPPNI----AELKNLEVLNLSNN-QIEELPTS--ISSLPKLRILNVGMN-RL 91 (264)
T ss_pred cHhhcc-cccchhhhhhhhcccCc-eeecCCcH----HHhhhhhhhhcccc-hhhhcChh--hhhchhhhheecchh-hh
Confidence 444444 35677888899999877 77666665 67889999999885 35554443 778999999998766 34
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCC
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPE 198 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~ 198 (430)
..+ |.++ +.+|.|+.|++.+. ++.+-... +....|..|+.|.+.++. +..+|
T Consensus 92 ~~l---------prgf-gs~p~levldltyn-nl~e~~lp-gnff~m~tlralyl~dnd-fe~lp--------------- 143 (264)
T KOG0617|consen 92 NIL---------PRGF-GSFPALEVLDLTYN-NLNENSLP-GNFFYMTTLRALYLGDND-FEILP--------------- 143 (264)
T ss_pred hcC---------cccc-CCCchhhhhhcccc-ccccccCC-cchhHHHHHHHHHhcCCC-cccCC---------------
Confidence 444 6776 88999999999874 33322111 114445555555565543 33222
Q ss_pred cccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCccc
Q 014145 199 KLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWH 273 (430)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~ 273 (430)
.+++.+++|+-|.++.. .+-+++.+. ..++.|++|.+.+. .++.+|..+.+
T Consensus 144 ------------------~dvg~lt~lqil~lrdn-dll~lpkei----g~lt~lrelhiqgn-rl~vlppel~~ 194 (264)
T KOG0617|consen 144 ------------------PDVGKLTNLQILSLRDN-DLLSLPKEI----GDLTRLRELHIQGN-RLTVLPPELAN 194 (264)
T ss_pred ------------------hhhhhhcceeEEeeccC-chhhCcHHH----HHHHHHHHHhcccc-eeeecChhhhh
Confidence 34567777777777773 455554443 67777888888773 56666655443
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.31 E-value=3.2e-08 Score=92.37 Aligned_cols=85 Identities=22% Similarity=0.250 Sum_probs=61.8
Q ss_pred CCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCC-cccCCCCCEEEEccCCCcccccCchhh
Q 014145 219 KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTS 297 (430)
Q Consensus 219 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~ 297 (430)
+..+++|+.|++++ +.++.+....| .....+++|.+... .+..+... +..+..|++|++.+. +++.+.+.+ +
T Consensus 270 f~~L~~L~~lnlsn-N~i~~i~~~aF---e~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~a-F 342 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSN-NKITRIEDGAF---EGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGA-F 342 (498)
T ss_pred HhhcccceEeccCC-Cccchhhhhhh---cchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC-eeEEEeccc-c
Confidence 35678999999998 57888877777 77888999999884 55544332 347788999999984 577665543 4
Q ss_pred ccccccceEeecc
Q 014145 298 ESLVNLGRMKIAD 310 (430)
Q Consensus 298 ~~l~~L~~L~l~~ 310 (430)
..+..|.+|.+-.
T Consensus 343 ~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 343 QTLFSLSTLNLLS 355 (498)
T ss_pred cccceeeeeehcc
Confidence 5666777877654
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.29 E-value=3.9e-08 Score=91.75 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=53.1
Q ss_pred hccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccC
Q 014145 297 SESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFS 376 (430)
Q Consensus 297 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 376 (430)
++.+++|++|++++. .+.++.. + ......+++.|.+.. .++..+..+ .+..+..|+.|.+.+. +++.+.
T Consensus 270 f~~L~~L~~lnlsnN-~i~~i~~---~----aFe~~a~l~eL~L~~-N~l~~v~~~-~f~~ls~L~tL~L~~N-~it~~~ 338 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNN-KITRIED---G----AFEGAAELQELYLTR-NKLEFVSSG-MFQGLSGLKTLSLYDN-QITTVA 338 (498)
T ss_pred HhhcccceEeccCCC-ccchhhh---h----hhcchhhhhhhhcCc-chHHHHHHH-hhhccccceeeeecCC-eeEEEe
Confidence 566777777777663 4444421 1 112255666666665 355555542 2345667777777774 454444
Q ss_pred -CCCcCCCCceeeeccccCCC-CCcccc
Q 014145 377 -QGVVDAPKLNKVKPTEEEDG-DDEGCW 402 (430)
Q Consensus 377 -~~~~~~~~L~~l~l~~~~~~-~~~~~~ 402 (430)
..+.+..+|.+|.+-+.++. +.++.|
T Consensus 339 ~~aF~~~~~l~~l~l~~Np~~CnC~l~w 366 (498)
T KOG4237|consen 339 PGAFQTLFSLSTLNLLSNPFNCNCRLAW 366 (498)
T ss_pred cccccccceeeeeehccCcccCccchHH
Confidence 33566777777777554422 344444
No 29
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.27 E-value=4.6e-08 Score=98.87 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=8.9
Q ss_pred CCCCCCEEecccCCCc
Q 014145 221 AFPQLRYLELSRLHKV 236 (430)
Q Consensus 221 ~~~~L~~L~l~~~~~l 236 (430)
.++.|++|++++|..+
T Consensus 293 ~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 293 RCPSLRELDLSGCHGL 308 (482)
T ss_pred hcCcccEEeeecCccc
Confidence 3455666666655544
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.20 E-value=1.1e-06 Score=75.39 Aligned_cols=106 Identities=21% Similarity=0.314 Sum_probs=32.8
Q ss_pred CCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCC
Q 014145 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 130 (430)
.++++|+++++. ++.+-.-. ..+.+|+.|+++++ .+..+.. +..+++|++|++++| .++.+
T Consensus 19 ~~~~~L~L~~n~-I~~Ie~L~----~~l~~L~~L~Ls~N-~I~~l~~---l~~L~~L~~L~L~~N-~I~~i--------- 79 (175)
T PF14580_consen 19 VKLRELNLRGNQ-ISTIENLG----ATLDKLEVLDLSNN-QITKLEG---LPGLPRLKTLDLSNN-RISSI--------- 79 (175)
T ss_dssp ------------------S------TT-TT--EEE-TTS---S--TT-------TT--EEE--SS----S----------
T ss_pred cccccccccccc-cccccchh----hhhcCCCEEECCCC-CCccccC---ccChhhhhhcccCCC-CCCcc---------
Confidence 367888888776 55432111 24678888888886 3554332 556888888888887 45555
Q ss_pred ccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 131 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
+.++...+|+|++|.+.++ .+.++..... +..+|+|+.|++.++|
T Consensus 80 ~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~-L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNN-KISDLNELEP-LSSLPKLRVLSLEGNP 124 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS----SCCCCGG-GGG-TT--EEE-TT-G
T ss_pred ccchHHhCCcCCEEECcCC-cCCChHHhHH-HHcCCCcceeeccCCc
Confidence 2222235788888888763 4444422211 5567777777777666
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=5.7e-08 Score=87.57 Aligned_cols=178 Identities=20% Similarity=0.170 Sum_probs=87.9
Q ss_pred CcceeecccccCCeee-ccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCC
Q 014145 52 DIKYLQLGHFPRLQEI-WHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 52 ~L~~L~l~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 130 (430)
+|++||++... ++.- -++. ...+.+|+.|.+.+.. +.+ +...-+..-.+|+.|+++.|..+++...
T Consensus 186 Rlq~lDLS~s~-it~stl~~i---Ls~C~kLk~lSlEg~~-LdD-~I~~~iAkN~~L~~lnlsm~sG~t~n~~------- 252 (419)
T KOG2120|consen 186 RLQHLDLSNSV-ITVSTLHGI---LSQCSKLKNLSLEGLR-LDD-PIVNTIAKNSNLVRLNLSMCSGFTENAL------- 252 (419)
T ss_pred hhHHhhcchhh-eeHHHHHHH---HHHHHhhhhccccccc-cCc-HHHHHHhccccceeeccccccccchhHH-------
Confidence 57888877544 4310 0000 1235666666666642 222 2222345556777777777765544311
Q ss_pred ccCcCCcCCccceeecCCccccccccCCccccc-cCCCccEEEeccCCCccccc--------CCCceEEEecCCCCCccc
Q 014145 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENII-EMPELRYLAIENCPDMETFI--------SNSVVHVTTDNKEPEKLT 201 (430)
Q Consensus 131 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~--------~~~L~~L~l~~~~~~~~~ 201 (430)
..++..+..|.+|+++.|....+...-. +. --++|+.|++++|.+.-... ++++.+|++++|....-.
T Consensus 253 -~ll~~scs~L~~LNlsWc~l~~~~Vtv~--V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~ 329 (419)
T KOG2120|consen 253 -QLLLSSCSRLDELNLSWCFLFTEKVTVA--VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND 329 (419)
T ss_pred -HHHHHhhhhHhhcCchHhhccchhhhHH--HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch
Confidence 2224566777777777665443331100 11 13467777777765322111 445555555555532211
Q ss_pred CCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecC
Q 014145 202 SEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISEC 261 (430)
Q Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c 261 (430)
.|..+..++.|++|.++.|..+.- +.+-.....|+|.+|++.+|
T Consensus 330 -------------~~~~~~kf~~L~~lSlsRCY~i~p---~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 330 -------------CFQEFFKFNYLQHLSLSRCYDIIP---ETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred -------------HHHHHHhcchheeeehhhhcCCCh---HHeeeeccCcceEEEEeccc
Confidence 223344566666666666654321 11111144556666666554
No 32
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.10 E-value=1.2e-05 Score=77.50 Aligned_cols=32 Identities=16% Similarity=0.076 Sum_probs=16.1
Q ss_pred ecccceEeccCCCCCceeccCCcccCCCCccEEeecc
Q 014145 332 FEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ 368 (430)
Q Consensus 332 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~ 368 (430)
+++|++|.+.+|..+. ++.+ . -.+|+.|.+..
T Consensus 155 PsSLk~L~Is~c~~i~-LP~~--L--P~SLk~L~ls~ 186 (426)
T PRK15386 155 SPSLKTLSLTGCSNII-LPEK--L--PESLQSITLHI 186 (426)
T ss_pred CCcccEEEecCCCccc-Cccc--c--cccCcEEEecc
Confidence 3456666666665442 2210 0 13566666654
No 33
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.09 E-value=2.6e-05 Score=75.29 Aligned_cols=16 Identities=25% Similarity=0.638 Sum_probs=7.4
Q ss_pred CCCEEEEecCCCccEe
Q 014145 106 NLRWLEVRNCDSLEEV 121 (430)
Q Consensus 106 ~L~~L~l~~~~~l~~~ 121 (430)
+|++|.+++|..+..+
T Consensus 73 sLtsL~Lsnc~nLtsL 88 (426)
T PRK15386 73 ELTEITIENCNNLTTL 88 (426)
T ss_pred CCcEEEccCCCCcccC
Confidence 3555555554444333
No 34
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.9e-07 Score=84.30 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=75.8
Q ss_pred hhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccc---
Q 014145 248 KAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGE--- 324 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~--- 324 (430)
..+..|+.|.+.+...-..+...+..-.+|++|+++.|.+++.....-.+.+|..|+.|+++.|....+.+.-.+..
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise 286 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE 286 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence 44455555555553322233233334445555555555555544333334455555555555554322221100000
Q ss_pred -------------c-----CCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcc-cCCCCcCCCCc
Q 014145 325 -------------E-----AKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKI-FSQGVVDAPKL 385 (430)
Q Consensus 325 -------------~-----~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~L 385 (430)
. +.-..-+|.|.+|++++|..++.-+. .....|+.|++|.++.|-.+-- --..+...|+|
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~-~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl 365 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSL 365 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH-HHHHhcchheeeehhhhcCCChHHeeeeccCcce
Confidence 0 00011277788888888887776322 2344688899999988876521 11234578899
Q ss_pred eeeecccc
Q 014145 386 NKVKPTEE 393 (430)
Q Consensus 386 ~~l~l~~~ 393 (430)
.++++.|+
T Consensus 366 ~yLdv~g~ 373 (419)
T KOG2120|consen 366 VYLDVFGC 373 (419)
T ss_pred EEEEeccc
Confidence 99999775
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.07 E-value=3.8e-06 Score=72.12 Aligned_cols=55 Identities=27% Similarity=0.394 Sum_probs=10.2
Q ss_pred CCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCC
Q 014145 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMD 148 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~ 148 (430)
.+++.|++.++. +..+- ..-..+.+|++|++++| .++.+ +++ ..+++|++|++++
T Consensus 19 ~~~~~L~L~~n~-I~~Ie--~L~~~l~~L~~L~Ls~N-~I~~l----------~~l-~~L~~L~~L~L~~ 73 (175)
T PF14580_consen 19 VKLRELNLRGNQ-ISTIE--NLGATLDKLEVLDLSNN-QITKL----------EGL-PGLPRLKTLDLSN 73 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S------------TT-----TT--EEE--S
T ss_pred cccccccccccc-ccccc--chhhhhcCCCEEECCCC-CCccc----------cCc-cChhhhhhcccCC
Confidence 345666666642 22211 11113556666666665 34444 222 4455666666655
No 36
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.00 E-value=2.1e-07 Score=94.11 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=59.3
Q ss_pred CCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecC-CCccEecccccccCCccCcCCcCCccceeecCCcccccccc
Q 014145 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC-DSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 78 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~-~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
+++|+.|.+.+|..+....-..+...+++|+.|++++| ....... .. ...+...+++|+.|++.++..+....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~--~~~~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSP----LL--LLLLLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccch----hH--hhhhhhhcCCcCccchhhhhccCchh
Confidence 56677777777666555332334556677777777663 1111110 00 01123445667777776665443331
Q ss_pred CCccccccCCCccEEEeccCCCccccc-------CCCceEEEecCCCC
Q 014145 157 NFTENIIEMPELRYLAIENCPDMETFI-------SNSVVHVTTDNKEP 197 (430)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~c~~l~~~~-------~~~L~~L~l~~~~~ 197 (430)
...- ...+++|++|.+.+|..+++.. ++.|++|++++|..
T Consensus 261 l~~l-~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 261 LSAL-ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHH-HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 1100 1236677777766676655443 45677777776663
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.97 E-value=9.8e-06 Score=56.82 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=30.2
Q ss_pred CCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCc
Q 014145 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDL 149 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~ 149 (430)
|+|+.|++++| ++..++ .+.+.++++|++|++++| .+..+ +.+.+..+++|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~-~~~f~~l~~L~~L~l~~N-~l~~i---------~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIP-PDSFSNLPNLETLDLSNN-NLTSI---------PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEEC-TTTTTTGTTESEEEETSS-SESEE---------ETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccC-HHHHcCCCCCCEeEccCC-ccCcc---------CHHHHcCCCCCCEEeCcCC
Confidence 34555555555 344432 223555566666666654 34444 3444455555555555554
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.90 E-value=6.7e-06 Score=74.53 Aligned_cols=127 Identities=18% Similarity=0.181 Sum_probs=79.8
Q ss_pred CceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcc
Q 014145 186 SVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQ 265 (430)
Q Consensus 186 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 265 (430)
.|+++++++|.+..+. .+....|.++.|+++.+ ++..+.. + ..+++|+.|++++. .+.
T Consensus 285 ~LtelDLS~N~I~~iD---------------ESvKL~Pkir~L~lS~N-~i~~v~n--L---a~L~~L~~LDLS~N-~Ls 342 (490)
T KOG1259|consen 285 ELTELDLSGNLITQID---------------ESVKLAPKLRRLILSQN-RIRTVQN--L---AELPQLQLLDLSGN-LLA 342 (490)
T ss_pred hhhhccccccchhhhh---------------hhhhhccceeEEecccc-ceeeehh--h---hhcccceEeecccc-hhH
Confidence 4677777777776655 34556788888888874 5555432 3 67788888888873 555
Q ss_pred cccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCC
Q 014145 266 KLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPS 345 (430)
Q Consensus 266 ~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 345 (430)
++-.+-..+-|.++|.+.+. .++++. .++.+-+|++||+++. .++++-. ..+...+|.|+.+.+.+.|-
T Consensus 343 ~~~Gwh~KLGNIKtL~La~N-~iE~LS---GL~KLYSLvnLDl~~N-~Ie~lde------V~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 343 ECVGWHLKLGNIKTLKLAQN-KIETLS---GLRKLYSLVNLDLSSN-QIEELDE------VNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhhHhhhcCEeeeehhhh-hHhhhh---hhHhhhhheecccccc-chhhHHH------hcccccccHHHHHhhcCCCc
Confidence 55444446677788888773 455554 3566777888888764 3443310 01223367777777766553
No 39
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=1.7e-05 Score=71.93 Aligned_cols=92 Identities=11% Similarity=0.203 Sum_probs=47.6
Q ss_pred CCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCccccc-CCcccCCCCCEEEEccCCCcccccCchhhcccc
Q 014145 223 PQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TPSWHLENLATLEVSKCHGLINVLTLSTSESLV 301 (430)
Q Consensus 223 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 301 (430)
+.+++|.+.+|.. ..|.+.-.....+|++..+.+..|+.-+.-. .....++.+.-|.+.. .++.+..+..-+..|+
T Consensus 173 ~~v~tlh~~~c~~--~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~ 249 (418)
T KOG2982|consen 173 TEVLTLHQLPCLE--QLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFP 249 (418)
T ss_pred hhhhhhhcCCcHH--HHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcc-cccccHHHHHHHcCCc
Confidence 4555555555521 1122211112556777777777765432211 1222444444455544 3455444433456778
Q ss_pred ccceEeeccccccchh
Q 014145 302 NLGRMKIADCKMIEQI 317 (430)
Q Consensus 302 ~L~~L~l~~c~~l~~~ 317 (430)
+|..|.+.+.|..+.+
T Consensus 250 ~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 250 QLVDLRVSENPLSDPL 265 (418)
T ss_pred hhheeeccCCcccccc
Confidence 8888888877765554
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.64 E-value=0.00013 Score=51.06 Aligned_cols=58 Identities=28% Similarity=0.336 Sum_probs=33.1
Q ss_pred CCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccC-CcccCCCCCEEEEccC
Q 014145 223 PQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKC 285 (430)
Q Consensus 223 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c 285 (430)
|+|++|+++++ +++.++...+ ..+++|+.|+++++ .+..++. .+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f---~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSF---SNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTT---TTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHH---cCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 35666666664 5666655555 56666666666654 3444443 3445666666666554
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.61 E-value=8.6e-06 Score=73.84 Aligned_cols=81 Identities=20% Similarity=0.267 Sum_probs=41.4
Q ss_pred CcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc----CCCceEEEecCCCCCcccCCCceeeecC
Q 014145 136 PLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTSEENFFLTDQ 211 (430)
Q Consensus 136 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 211 (430)
..+++|..|+++++ .+.++..+ ...+-+.++|.+..+. +.+++ ..+|..|++.+|.+.....
T Consensus 326 a~L~~L~~LDLS~N-~Ls~~~Gw---h~KLGNIKtL~La~N~-iE~LSGL~KLYSLvnLDl~~N~Ie~lde--------- 391 (490)
T KOG1259|consen 326 AELPQLQLLDLSGN-LLAECVGW---HLKLGNIKTLKLAQNK-IETLSGLRKLYSLVNLDLSSNQIEELDE--------- 391 (490)
T ss_pred hhcccceEeecccc-hhHhhhhh---HhhhcCEeeeehhhhh-HhhhhhhHhhhhheeccccccchhhHHH---------
Confidence 44455555555542 22222111 3344555555555432 33333 3456666666666554321
Q ss_pred cccccccCCCCCCCCEEecccCC
Q 014145 212 IQPLFDEKVAFPQLRYLELSRLH 234 (430)
Q Consensus 212 ~~~~~~~~~~~~~L~~L~l~~~~ 234 (430)
..++|.+|.|+.+.+.+++
T Consensus 392 ----V~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 392 ----VNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ----hcccccccHHHHHhhcCCC
Confidence 1346778888888887754
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.45 E-value=1e-05 Score=79.35 Aligned_cols=139 Identities=22% Similarity=0.243 Sum_probs=94.2
Q ss_pred chhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCC
Q 014145 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 117 (430)
+.+.++|.+...|-.|+.+.++.+. +..++... ..+..|.+|+++... .+..|.+ +-.|+ |++|.+++| +
T Consensus 85 NR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i----~~L~~lt~l~ls~Nq--lS~lp~~-lC~lp-Lkvli~sNN-k 154 (722)
T KOG0532|consen 85 NRFSELPEEACAFVSLESLILYHNC-IRTIPEAI----CNLEALTFLDLSSNQ--LSHLPDG-LCDLP-LKVLIVSNN-K 154 (722)
T ss_pred cccccCchHHHHHHHHHHHHHHhcc-ceecchhh----hhhhHHHHhhhccch--hhcCChh-hhcCc-ceeEEEecC-c
Confidence 5678899999999999999998766 55444444 677888888888753 3334544 33455 999999987 5
Q ss_pred ccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc----CCCceEEEec
Q 014145 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTD 193 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~l~ 193 (430)
++.+ |+++ +..+.|..|+.++| .+..++.. +..+.+|+.|++.++. +..++ ...|..|+++
T Consensus 155 l~~l---------p~~i-g~~~tl~~ld~s~n-ei~slpsq---l~~l~slr~l~vrRn~-l~~lp~El~~LpLi~lDfS 219 (722)
T KOG0532|consen 155 LTSL---------PEEI-GLLPTLAHLDVSKN-EIQSLPSQ---LGYLTSLRDLNVRRNH-LEDLPEELCSLPLIRLDFS 219 (722)
T ss_pred cccC---------Cccc-ccchhHHHhhhhhh-hhhhchHH---hhhHHHHHHHHHhhhh-hhhCCHHHhCCceeeeecc
Confidence 7776 6777 57888888888875 55556554 6677777777777665 43333 2244555555
Q ss_pred CCCCCccc
Q 014145 194 NKEPEKLT 201 (430)
Q Consensus 194 ~~~~~~~~ 201 (430)
.|.+..+.
T Consensus 220 cNkis~iP 227 (722)
T KOG0532|consen 220 CNKISYLP 227 (722)
T ss_pred cCceeecc
Confidence 55554443
No 43
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.34 E-value=0.00011 Score=76.84 Aligned_cols=112 Identities=17% Similarity=0.297 Sum_probs=65.1
Q ss_pred CCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccC
Q 014145 50 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 129 (430)
Q Consensus 50 l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 129 (430)
=.+|++|++++...+..-|... . ...+|.|+.|.+.+-. +....-....+++|||..||||++ .++.+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~k-i-g~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-------- 188 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKK-I-GTMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGT-NISNL-------- 188 (699)
T ss_pred HHhhhhcCccccchhhccHHHH-H-hhhCcccceEEecCce-ecchhHHHHhhccCccceeecCCC-CccCc--------
Confidence 3578888887765555545333 1 1357888888887742 211111224567888888888876 45554
Q ss_pred CccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCC
Q 014145 130 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPD 178 (430)
Q Consensus 130 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~ 178 (430)
.|+ ..+.+|+.|.+.+..-.. ...... +.++.+|+.|+++.-..
T Consensus 189 --~GI-S~LknLq~L~mrnLe~e~-~~~l~~-LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 189 --SGI-SRLKNLQVLSMRNLEFES-YQDLID-LFNLKKLRVLDISRDKN 232 (699)
T ss_pred --HHH-hccccHHHHhccCCCCCc-hhhHHH-HhcccCCCeeecccccc
Confidence 343 667777777777653221 111111 55677777777776543
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.24 E-value=0.00025 Score=69.87 Aligned_cols=174 Identities=22% Similarity=0.262 Sum_probs=111.2
Q ss_pred CCCCcceEEEeCCCCCCccCchhHHHhcC-CCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccc
Q 014145 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLN-NLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 77 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~ 155 (430)
.++.++.|.+.+. .+.++.+. ...+. +|+.|+++++ .+..+ |..+ ..++.|+.|+++++ .+..+
T Consensus 114 ~~~~l~~L~l~~n-~i~~i~~~--~~~~~~nL~~L~l~~N-~i~~l---------~~~~-~~l~~L~~L~l~~N-~l~~l 178 (394)
T COG4886 114 ELTNLTSLDLDNN-NITDIPPL--IGLLKSNLKELDLSDN-KIESL---------PSPL-RNLPNLKNLDLSFN-DLSDL 178 (394)
T ss_pred cccceeEEecCCc-ccccCccc--cccchhhccccccccc-chhhh---------hhhh-hccccccccccCCc-hhhhh
Confidence 4567888887765 45555544 33342 7888888887 35444 2233 77888888888885 55556
Q ss_pred cCCccccccCCCccEEEeccCCCccccc-----CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEec
Q 014145 156 CNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLEL 230 (430)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l 230 (430)
+.. ....++|+.|.++++. ++.++ +..|+.+.++++....+. .....+.++..+.+
T Consensus 179 ~~~---~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~---------------~~~~~~~~l~~l~l 239 (394)
T COG4886 179 PKL---LSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELL---------------SSLSNLKNLSGLEL 239 (394)
T ss_pred hhh---hhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecc---------------hhhhhccccccccc
Confidence 543 3377888888888865 66665 335888888888533322 12345566666665
Q ss_pred ccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccc
Q 014145 231 SRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINV 291 (430)
Q Consensus 231 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l 291 (430)
.+. .+..+ .... ..+++++.|+++++ .+..++. +..+.+++.|++++.......
T Consensus 240 ~~n-~~~~~-~~~~---~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 240 SNN-KLEDL-PESI---GNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred CCc-eeeec-cchh---ccccccceeccccc-ccccccc-ccccCccCEEeccCccccccc
Confidence 543 33332 2222 66778999988885 5566654 678888999999886544433
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.22 E-value=0.00033 Score=69.06 Aligned_cols=172 Identities=23% Similarity=0.314 Sum_probs=122.1
Q ss_pred HHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCC-ccceeecCCccccccccCCccccccCCCccEEEeccCCCc
Q 014145 101 IRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFP-KLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDM 179 (430)
Q Consensus 101 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l 179 (430)
+..+.++..|++.++ .+..+ +... ..+. +|+.|++++. .+..++.. +..+++|+.|.+.+++ +
T Consensus 112 ~~~~~~l~~L~l~~n-~i~~i---------~~~~-~~~~~nL~~L~l~~N-~i~~l~~~---~~~l~~L~~L~l~~N~-l 175 (394)
T COG4886 112 LLELTNLTSLDLDNN-NITDI---------PPLI-GLLKSNLKELDLSDN-KIESLPSP---LRNLPNLKNLDLSFND-L 175 (394)
T ss_pred hhcccceeEEecCCc-ccccC---------cccc-ccchhhccccccccc-chhhhhhh---hhccccccccccCCch-h
Confidence 345678999999887 46565 3332 5553 8999999984 66666433 7899999999999987 6
Q ss_pred cccc-----CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhccccc
Q 014145 180 ETFI-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLI 254 (430)
Q Consensus 180 ~~~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~ 254 (430)
+.++ .+.++.++++++.+..+.. .......|++|.+++...++.. ... ..++++.
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~---------------~~~~~~~L~~l~~~~N~~~~~~--~~~---~~~~~l~ 235 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNKISDLPP---------------EIELLSALEELDLSNNSIIELL--SSL---SNLKNLS 235 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCccccCch---------------hhhhhhhhhhhhhcCCcceecc--hhh---hhccccc
Confidence 6655 4679999999999887661 1134556999999985423332 222 6667777
Q ss_pred EEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccc
Q 014145 255 RLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKM 313 (430)
Q Consensus 255 ~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~ 313 (430)
.+.+.+ ..+..++..+..+++++.|+++++ .+.++.. .+.+..++.|++++...
T Consensus 236 ~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 236 GLELSN-NKLEDLPESIGNLSNLETLDLSNN-QISSISS---LGSLTNLRELDLSGNSL 289 (394)
T ss_pred ccccCC-ceeeeccchhccccccceeccccc-ccccccc---ccccCccCEEeccCccc
Confidence 777544 344454666778889999999985 5666654 67788999999987543
No 46
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.84 E-value=0.00031 Score=73.38 Aligned_cols=86 Identities=20% Similarity=0.295 Sum_probs=52.2
Q ss_pred CCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccC
Q 014145 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 157 (430)
Q Consensus 78 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~ 157 (430)
-.+|++|+++|-..+..-++..+..-+|+|+.|.+++-..... ++ ..+..+||+|..|+++++ ++..+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~-----dF----~~lc~sFpNL~sLDIS~T-nI~nl~- 189 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND-----DF----SQLCASFPNLRSLDISGT-NISNLS- 189 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch-----hH----HHHhhccCccceeecCCC-CccCcH-
Confidence 3578888887765555555555566678888888876321111 00 112457788888888875 344341
Q ss_pred CccccccCCCccEEEeccCC
Q 014145 158 FTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~c~ 177 (430)
+ +..+++|+.|.+.+..
T Consensus 190 G---IS~LknLq~L~mrnLe 206 (699)
T KOG3665|consen 190 G---ISRLKNLQVLSMRNLE 206 (699)
T ss_pred H---HhccccHHHHhccCCC
Confidence 2 6677777777776654
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.82 E-value=0.00024 Score=66.01 Aligned_cols=242 Identities=16% Similarity=0.069 Sum_probs=115.4
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeee--ccCCCCCCCCCCCcceEEEeCCCCCCcc----Cchh------HHHhcCC
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEI--WHGQALPVSFFNNLRHLVVDDCTNMLSA----IPAN------LIRCLNN 106 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~~l~~L~~L~l~~c~~l~~~----~~~~------~~~~l~~ 106 (430)
..+.+...+-++..++.++++++.--..- |.+..+ .+-++|+.-++++. ++.. .|.. .+..+++
T Consensus 18 d~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L--~~~~~L~~v~~sd~--ftGR~~~Ei~e~L~~l~~aL~~~~~ 93 (382)
T KOG1909|consen 18 DEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVL--ASKKELREVNLSDM--FTGRLKDEIPEALKMLSKALLGCPK 93 (382)
T ss_pred hhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHH--hhcccceeeehHhh--hcCCcHHHHHHHHHHHHHHHhcCCc
Confidence 34556666778899999999987621110 111101 33457777777762 2221 1221 2446789
Q ss_pred CCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccc-cCC
Q 014145 107 LRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETF-ISN 185 (430)
Q Consensus 107 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-~~~ 185 (430)
|++|++|+|-. +.- ++..+ ..++..+..|++|.+.+|.. ....... ++ ..|..|. ..+-. .++
T Consensus 94 L~~ldLSDNA~-G~~----g~~~l-~~ll~s~~~L~eL~L~N~Gl-g~~ag~~--l~--~al~~l~-----~~kk~~~~~ 157 (382)
T KOG1909|consen 94 LQKLDLSDNAF-GPK----GIRGL-EELLSSCTDLEELYLNNCGL-GPEAGGR--LG--RALFELA-----VNKKAASKP 157 (382)
T ss_pred eeEeecccccc-Ccc----chHHH-HHHHHhccCHHHHhhhcCCC-ChhHHHH--HH--HHHHHHH-----HHhccCCCc
Confidence 99999999842 211 11111 11235577888888888743 2111000 00 0011111 00000 133
Q ss_pred CceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeecc-CCchhhhhcccccEEEeecCCCc
Q 014145 186 SVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWK-ENDESNKAFANLIRLKISECSKL 264 (430)
Q Consensus 186 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~l~~L~~L~l~~c~~l 264 (430)
.|+.+...+|....-.. + .+... +...+.|+.+.+... .+..-.. ........+++|+.|++.+...-
T Consensus 158 ~Lrv~i~~rNrlen~ga-~------~~A~~---~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 158 KLRVFICGRNRLENGGA-T------ALAEA---FQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ceEEEEeeccccccccH-H------HHHHH---HHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 44444444444322110 0 00111 123356666666553 2211000 00111166778888887764221
Q ss_pred c----cccCCcccCCCCCEEEEccCCCcccccC----chhhccccccceEeecccc
Q 014145 265 Q----KLVTPSWHLENLATLEVSKCHGLINVLT----LSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 265 ~----~l~~~l~~l~~L~~L~l~~c~~l~~l~~----~~~~~~l~~L~~L~l~~c~ 312 (430)
. .+...+..+++|+.+++++|. +++-.. .++..+.|.|+.|.+.+|.
T Consensus 227 ~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 227 LEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred hHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcch
Confidence 1 222345566778888888884 332211 1123456788888887764
No 48
>PLN03150 hypothetical protein; Provisional
Probab=96.66 E-value=0.0039 Score=65.14 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=55.7
Q ss_pred cceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCCcc
Q 014145 81 LRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTE 160 (430)
Q Consensus 81 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~ 160 (430)
++.|+++++ .+....|.. +..+++|+.|++++|..-+.+ |..+ ..+++|+.|+++++.....+|..
T Consensus 420 v~~L~L~~n-~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~i---------P~~~-~~l~~L~~LdLs~N~lsg~iP~~-- 485 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPND-ISKLRHLQSINLSGNSIRGNI---------PPSL-GSITSLEVLDLSYNSFNGSIPES-- 485 (623)
T ss_pred EEEEECCCC-CccccCCHH-HhCCCCCCEEECCCCcccCcC---------ChHH-hCCCCCCEEECCCCCCCCCCchH--
Confidence 677777776 344444444 677888888888887533344 4444 77888888888886554555544
Q ss_pred ccccCCCccEEEeccCC
Q 014145 161 NIIEMPELRYLAIENCP 177 (430)
Q Consensus 161 ~~~~~~~L~~L~l~~c~ 177 (430)
+..+++|+.|++.++.
T Consensus 486 -l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 486 -LGQLTSLRILNLNGNS 501 (623)
T ss_pred -HhcCCCCCEEECcCCc
Confidence 6678888888887765
No 49
>PLN03150 hypothetical protein; Provisional
Probab=96.63 E-value=0.0029 Score=66.07 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=77.8
Q ss_pred CcceeecccccCCee-eccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCC
Q 014145 52 DIKYLQLGHFPRLQE-IWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 52 ~L~~L~l~~~~~l~~-~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 130 (430)
.++.|+|+++. +.. ++... ..+++|+.|+++++. +....|.. +..+++|+.|++++|..-..+
T Consensus 419 ~v~~L~L~~n~-L~g~ip~~i----~~L~~L~~L~Ls~N~-l~g~iP~~-~~~l~~L~~LdLs~N~lsg~i--------- 482 (623)
T PLN03150 419 FIDGLGLDNQG-LRGFIPNDI----SKLRHLQSINLSGNS-IRGNIPPS-LGSITSLEVLDLSYNSFNGSI--------- 482 (623)
T ss_pred EEEEEECCCCC-ccccCCHHH----hCCCCCCEEECCCCc-ccCcCChH-HhCCCCCCEEECCCCCCCCCC---------
Confidence 47888888776 543 22222 578999999999974 55444544 788999999999999544444
Q ss_pred ccCcCCcCCccceeecCCccccccccCCcccccc-CCCccEEEeccCCCccc
Q 014145 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIE-MPELRYLAIENCPDMET 181 (430)
Q Consensus 131 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~-~~~L~~L~l~~c~~l~~ 181 (430)
|..+ ..+++|+.|+++++.....+|.. +.. ..++..+.+.+++.+-.
T Consensus 483 P~~l-~~L~~L~~L~Ls~N~l~g~iP~~---l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 483 PESL-GQLTSLRILNLNGNSLSGRVPAA---LGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred chHH-hcCCCCCEEECcCCcccccCChH---HhhccccCceEEecCCccccC
Confidence 4554 88999999999998766667654 333 34677888887765543
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.61 E-value=5.2e-05 Score=76.58 Aligned_cols=86 Identities=22% Similarity=0.157 Sum_probs=48.0
Q ss_pred CCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhc
Q 014145 219 KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSE 298 (430)
Q Consensus 219 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~ 298 (430)
+..++.|++|||++ +.++.++.-.. .. ..|+.|.+++. .++++ .++.++.+|+.|+++.+ -+........+.
T Consensus 205 Lr~l~~LkhLDlsy-N~L~~vp~l~~---~g-c~L~~L~lrnN-~l~tL-~gie~LksL~~LDlsyN-ll~~hseL~pLw 276 (1096)
T KOG1859|consen 205 LRRLPKLKHLDLSY-NCLRHVPQLSM---VG-CKLQLLNLRNN-ALTTL-RGIENLKSLYGLDLSYN-LLSEHSELEPLW 276 (1096)
T ss_pred HHhccccccccccc-chhccccccch---hh-hhheeeeeccc-HHHhh-hhHHhhhhhhccchhHh-hhhcchhhhHHH
Confidence 45567777777776 35555532221 22 23777777763 45555 34557777777777753 222222222344
Q ss_pred cccccceEeecccc
Q 014145 299 SLVNLGRMKIADCK 312 (430)
Q Consensus 299 ~l~~L~~L~l~~c~ 312 (430)
.+..|..|++.++|
T Consensus 277 sLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 277 SLSSLIVLWLEGNP 290 (1096)
T ss_pred HHHHHHHHhhcCCc
Confidence 55667777776654
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.00082 Score=61.28 Aligned_cols=92 Identities=15% Similarity=0.110 Sum_probs=44.7
Q ss_pred ccccEEEeecCCCccc--ccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCc
Q 014145 251 ANLIRLKISECSKLQK--LVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKG 328 (430)
Q Consensus 251 ~~L~~L~l~~c~~l~~--l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 328 (430)
+.+++|.+.+|..... .-.....||++..+.+..|+ +++..+......+|.+.-|.+.. .++..+..- +.
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~-~~idswasv------D~ 244 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGA-NNIDSWASV------DA 244 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhcc-cccccHHHH------HH
Confidence 4556666666543221 11112356677777776664 44444433344555555555543 233332211 11
Q ss_pred ceeecccceEeccCCCCCceec
Q 014145 329 CVVFEELGYLGLDCLPSLTSFC 350 (430)
Q Consensus 329 ~~~~~~L~~L~l~~c~~L~~~~ 350 (430)
...|+.|..|.+.+.|-...+.
T Consensus 245 Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 245 LNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred HcCCchhheeeccCCccccccc
Confidence 1226666666666666554443
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.18 E-value=7.3e-05 Score=75.53 Aligned_cols=102 Identities=20% Similarity=0.189 Sum_probs=61.2
Q ss_pred CcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc---C--CCceEEEecCCCCCcccCCCceeeec
Q 014145 136 PLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---S--NSVVHVTTDNKEPEKLTSEENFFLTD 210 (430)
Q Consensus 136 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~--~~L~~L~l~~~~~~~~~~~~~l~~~~ 210 (430)
..++.|+.|+++.+ ++..... +..++.|++|++.++. ++.++ + ..|+.|.+.+|.+.+.-
T Consensus 184 qll~ale~LnLshN-k~~~v~~----Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN~l~tL~--------- 248 (1096)
T KOG1859|consen 184 QLLPALESLNLSHN-KFTKVDN----LRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNNALTTLR--------- 248 (1096)
T ss_pred HHHHHhhhhccchh-hhhhhHH----HHhcccccccccccch-hccccccchhhhhheeeeecccHHHhhh---------
Confidence 56678888888874 3433332 6678888888887654 44443 1 24777788777766543
Q ss_pred CcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCC
Q 014145 211 QIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECS 262 (430)
Q Consensus 211 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~ 262 (430)
.+..+.+|+.||++++ -+... .+.. ....+..|+.|.+.+.+
T Consensus 249 -------gie~LksL~~LDlsyN-ll~~h-seL~-pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 249 -------GIENLKSLYGLDLSYN-LLSEH-SELE-PLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred -------hHHhhhhhhccchhHh-hhhcc-hhhh-HHHHHHHHHHHhhcCCc
Confidence 3456677788887763 22221 1111 11456677777777654
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.17 E-value=0.0058 Score=39.41 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=22.2
Q ss_pred CCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEe
Q 014145 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEV 121 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 121 (430)
++|++|+++++ ++.++++. +.+|++|++|++++| .+.++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~--l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPE--LSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGH--GTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCC-CCcccCch--HhCCCCCCEEEecCC-CCCCC
Confidence 45677777766 45554332 556777777777776 34443
No 54
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.08 E-value=0.00099 Score=66.14 Aligned_cols=104 Identities=15% Similarity=0.167 Sum_probs=59.4
Q ss_pred CCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccc
Q 014145 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~ 155 (430)
..+.+|+.|++.+. .+..+... +.++++|++|++++| .++.+ .++ ..++.|+.|++.++ .+..+
T Consensus 92 ~~~~~l~~l~l~~n-~i~~i~~~--l~~~~~L~~L~ls~N-~I~~i----------~~l-~~l~~L~~L~l~~N-~i~~~ 155 (414)
T KOG0531|consen 92 SKLKSLEALDLYDN-KIEKIENL--LSSLVNLQVLDLSFN-KITKL----------EGL-STLTLLKELNLSGN-LISDI 155 (414)
T ss_pred ccccceeeeecccc-chhhcccc--hhhhhcchheecccc-ccccc----------cch-hhccchhhheeccC-cchhc
Confidence 45677777777764 33333221 446777888888877 45555 333 55666777777774 34434
Q ss_pred cCCccccccCCCccEEEeccCCCccccc------CCCceEEEecCCCCCcc
Q 014145 156 CNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKL 200 (430)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~~~ 200 (430)
.. ...+++|+.+.+.++. ++.+. ...++.+.+.++.+..+
T Consensus 156 ~~----~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 156 SG----LESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred cC----CccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCchhcc
Confidence 22 3346677777776665 32222 23455556666665443
No 55
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.06 E-value=0.00091 Score=66.09 Aligned_cols=73 Identities=21% Similarity=0.289 Sum_probs=45.2
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
.+..+|..+..+..|.+++|+.+. +...+.+. .+--|+.|.+++. +++.++.. ++..+.|..||.+.|. +
T Consensus 109 ~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~l-----C~lpLkvli~sNN-kl~~lp~~--ig~~~tl~~ld~s~ne-i 178 (722)
T KOG0532|consen 109 CIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGL-----CDLPLKVLIVSNN-KLTSLPEE--IGLLPTLAHLDVSKNE-I 178 (722)
T ss_pred cceecchhhhhhhHHHHhhhccch-hhcCChhh-----hcCcceeEEEecC-ccccCCcc--cccchhHHHhhhhhhh-h
Confidence 455566667777788888887655 55433333 2345777777765 45554433 4467778888887773 4
Q ss_pred cEe
Q 014145 119 EEV 121 (430)
Q Consensus 119 ~~~ 121 (430)
..+
T Consensus 179 ~sl 181 (722)
T KOG0532|consen 179 QSL 181 (722)
T ss_pred hhc
Confidence 444
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.68 E-value=0.022 Score=49.37 Aligned_cols=84 Identities=17% Similarity=0.333 Sum_probs=52.9
Q ss_pred CCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccC
Q 014145 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 157 (430)
Q Consensus 78 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~ 157 (430)
..+...+++++.. +..+. .+.++++|.+|.+.+| .+..+ .+.+...+|+|.+|.+.++ ++.++..
T Consensus 41 ~d~~d~iDLtdNd-l~~l~---~lp~l~rL~tLll~nN-rIt~I---------~p~L~~~~p~l~~L~LtnN-si~~l~d 105 (233)
T KOG1644|consen 41 LDQFDAIDLTDND-LRKLD---NLPHLPRLHTLLLNNN-RITRI---------DPDLDTFLPNLKTLILTNN-SIQELGD 105 (233)
T ss_pred ccccceecccccc-hhhcc---cCCCccccceEEecCC-cceee---------ccchhhhccccceEEecCc-chhhhhh
Confidence 4456677777652 32221 1456888888888887 46666 4555567788888888873 4444432
Q ss_pred CccccccCCCccEEEeccCC
Q 014145 158 FTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~c~ 177 (430)
... ...+|.|++|.+-+++
T Consensus 106 l~p-La~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 106 LDP-LASCPKLEYLTLLGNP 124 (233)
T ss_pred cch-hccCCccceeeecCCc
Confidence 222 5677777777776665
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.23 E-value=0.022 Score=36.70 Aligned_cols=33 Identities=33% Similarity=0.387 Sum_probs=16.4
Q ss_pred cccEEEeecCCCcccccCCcccCCCCCEEEEccC
Q 014145 252 NLIRLKISECSKLQKLVTPSWHLENLATLEVSKC 285 (430)
Q Consensus 252 ~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c 285 (430)
+|++|+++++ .++.+|..+..+++|+.|+++++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence 4555555553 34445444555555555555554
No 58
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.73 E-value=0.0088 Score=59.38 Aligned_cols=114 Identities=18% Similarity=0.136 Sum_probs=77.5
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
+++.-..+..|.+|+.|++.+.. ++.+.... ..+++|++|++++. .+..+.+ +..+..|+.|++++| .+.
T Consensus 84 i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l----~~~~~L~~L~ls~N-~I~~i~~---l~~l~~L~~L~l~~N-~i~ 153 (414)
T KOG0531|consen 84 IAKILNHLSKLKSLEALDLYDNK-IEKIENLL----SSLVNLQVLDLSFN-KITKLEG---LSTLTLLKELNLSGN-LIS 153 (414)
T ss_pred hhhhhcccccccceeeeeccccc-hhhcccch----hhhhcchheecccc-ccccccc---hhhccchhhheeccC-cch
Confidence 44434447789999999999877 77643212 57999999999985 4555444 446788999999998 466
Q ss_pred EecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
.+ .++ ..++.|+.+++.++. +..+... . ...+.+++.+.+.++.
T Consensus 154 ~~----------~~~-~~l~~L~~l~l~~n~-i~~ie~~-~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 154 DI----------SGL-ESLKSLKLLDLSYNR-IVDIEND-E-LSELISLEELDLGGNS 197 (414)
T ss_pred hc----------cCC-ccchhhhcccCCcch-hhhhhhh-h-hhhccchHHHhccCCc
Confidence 65 232 457888899998853 3333220 0 2567778888877765
No 59
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.60 E-value=0.0043 Score=57.85 Aligned_cols=146 Identities=16% Similarity=0.119 Sum_probs=86.7
Q ss_pred CCCCCCCEEecccCCCceeeccCCch-hhhhcccccEEEeecCCCcc----cccCCcccCCCCCEEEEccCCCcccccCc
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDE-SNKAFANLIRLKISECSKLQ----KLVTPSWHLENLATLEVSKCHGLINVLTL 294 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~c~~l~----~l~~~l~~l~~L~~L~l~~c~~l~~l~~~ 294 (430)
+.-+.|+.+...++ .+.+.....++ .....+.|+.+.+.+...-. -+...+..+++|+.|+++++. ++.-...
T Consensus 154 ~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~ 231 (382)
T KOG1909|consen 154 ASKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSV 231 (382)
T ss_pred CCCcceEEEEeecc-ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHH
Confidence 45679999998874 55553222211 12566899999998754432 122345689999999999864 3222111
Q ss_pred h---hhccccccceEeeccccccchhhcccccccCC-cceeecccceEeccCCCCCceec--cCCcccCCCCccEEeecc
Q 014145 295 S---TSESLVNLGRMKIADCKMIEQIIQLQVGEEAK-GCVVFEELGYLGLDCLPSLTSFC--LGNYALEFPSLEHVVVRQ 368 (430)
Q Consensus 295 ~---~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~c~~L~~~~--~~~~~~~~~~L~~L~l~~ 368 (430)
. ....+++|+.|++++|.. +.-... .+.. -...+|+|+.|.+.++.-=++-. ........|.|++|++.+
T Consensus 232 ~LakaL~s~~~L~El~l~dcll-~~~Ga~---a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLL-ENEGAI---AFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred HHHHHhcccchheeeccccccc-ccccHH---HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 1 245678899999999953 211000 0000 01228999999999874311100 000112368999999999
Q ss_pred CCC
Q 014145 369 CPT 371 (430)
Q Consensus 369 c~~ 371 (430)
|..
T Consensus 308 N~l 310 (382)
T KOG1909|consen 308 NRL 310 (382)
T ss_pred ccc
Confidence 855
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.40 E-value=0.092 Score=45.60 Aligned_cols=109 Identities=23% Similarity=0.293 Sum_probs=66.6
Q ss_pred CcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCc
Q 014145 52 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 131 (430)
Q Consensus 52 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 131 (430)
....++++++. +..+ .....+++|..|.+++. .++.+.|. +..-+++|+.|.+++| ++..++++
T Consensus 43 ~~d~iDLtdNd-l~~l-----~~lp~l~rL~tLll~nN-rIt~I~p~-L~~~~p~l~~L~LtnN-si~~l~dl------- 106 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKL-----DNLPHLPRLHTLLLNNN-RITRIDPD-LDTFLPNLKTLILTNN-SIQELGDL------- 106 (233)
T ss_pred ccceecccccc-hhhc-----ccCCCccccceEEecCC-cceeeccc-hhhhccccceEEecCc-chhhhhhc-------
Confidence 45566666655 3221 11145778888888875 45554443 3556788999999998 56555331
Q ss_pred cCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 132 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 132 ~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
..+ ..+|+|++|.+-+.+.-..--.-..-+..+|+|+.|++..-.
T Consensus 107 ~pL-a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 107 DPL-ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred chh-ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 233 678999999987754322110011115678888888887543
No 61
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.35 E-value=0.0052 Score=53.08 Aligned_cols=66 Identities=21% Similarity=0.338 Sum_probs=28.8
Q ss_pred ccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCC
Q 014145 298 ESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP 370 (430)
Q Consensus 298 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~ 370 (430)
..++.++.|.+.+|..+.+.....+. ..+++|+.|++++|+.+++.... ....+++|+.|.+.+.+
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~------~~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLG------GLAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRRLHLYDLP 187 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhc------ccccchheeeccCCCeechhHHH-HHHHhhhhHHHHhcCch
Confidence 34444555555555544444322111 12455555555555555544321 12234555555554443
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.11 E-value=0.0012 Score=59.67 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=62.9
Q ss_pred CCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhcccc
Q 014145 222 FPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLV 301 (430)
Q Consensus 222 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 301 (430)
+.+.+.|++.+| ++.++... ..++.|+.|.++-. .+.++ ..+..|++|++|+++.+ .+.++....++.++|
T Consensus 18 l~~vkKLNcwg~-~L~DIsic-----~kMp~lEVLsLSvN-kIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISIC-----EKMPLLEVLSLSVN-KISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCC-CccHHHHH-----HhcccceeEEeecc-ccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCc
Confidence 457788888886 56665322 77899999999874 45555 34668889999999873 577776666788999
Q ss_pred ccceEeeccccccc
Q 014145 302 NLGRMKIADCKMIE 315 (430)
Q Consensus 302 ~L~~L~l~~c~~l~ 315 (430)
+|+.|+|..++..+
T Consensus 89 sLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 89 SLRTLWLDENPCCG 102 (388)
T ss_pred hhhhHhhccCCccc
Confidence 99999998876544
No 63
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.03 E-value=0.0063 Score=52.56 Aligned_cols=44 Identities=14% Similarity=0.272 Sum_probs=19.3
Q ss_pred cCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccch
Q 014145 273 HLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQ 316 (430)
Q Consensus 273 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~ 316 (430)
.++.++.|.+.+|..+.+--.....+-.++|+.|+|+.|+.+.+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 34444444445554444332222222334555555555554443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.69 E-value=0.033 Score=50.09 Aligned_cols=40 Identities=25% Similarity=0.360 Sum_probs=17.9
Q ss_pred CcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 136 PLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 136 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
..+|+|++++++++. ++.+.. ......+++|..|.+.+|+
T Consensus 88 e~~P~l~~l~ls~Nk-i~~lst-l~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 88 EKAPNLKVLNLSGNK-IKDLST-LRPLKELENLKSLDLFNCS 127 (260)
T ss_pred hhCCceeEEeecCCc-cccccc-cchhhhhcchhhhhcccCC
Confidence 344566666655532 221111 0114455555566665555
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.34 E-value=0.012 Score=53.39 Aligned_cols=83 Identities=23% Similarity=0.203 Sum_probs=48.6
Q ss_pred CCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccC
Q 014145 50 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 129 (430)
Q Consensus 50 l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 129 (430)
+.+.+.|+..+|. +.++..+. .|+.|+.|.++-. ++.++.| +..|.+|++|.+..|. +.++ +++..
T Consensus 18 l~~vkKLNcwg~~-L~DIsic~-----kMp~lEVLsLSvN-kIssL~p---l~rCtrLkElYLRkN~-I~sl---dEL~Y 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISICE-----KMPLLEVLSLSVN-KISSLAP---LQRCTRLKELYLRKNC-IESL---DELEY 83 (388)
T ss_pred HHHhhhhcccCCC-ccHHHHHH-----hcccceeEEeecc-ccccchh---HHHHHHHHHHHHHhcc-cccH---HHHHH
Confidence 4466677777665 66543333 6777777777764 3444333 4567777777777662 3322 22222
Q ss_pred CccCcCCcCCccceeecCCccc
Q 014145 130 DKEHIGPLFPKLFELTLMDLPK 151 (430)
Q Consensus 130 ~~~~l~~~l~~L~~L~l~~~~~ 151 (430)
+ .++|+|+.|.|..++.
T Consensus 84 L-----knlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 84 L-----KNLPSLRTLWLDENPC 100 (388)
T ss_pred H-----hcCchhhhHhhccCCc
Confidence 2 5667777777766443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.82 E-value=0.099 Score=47.12 Aligned_cols=89 Identities=26% Similarity=0.170 Sum_probs=41.1
Q ss_pred CCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCC--cccccCCcccCCCCCEEEEccCCCcccccC--c
Q 014145 219 KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSK--LQKLVTPSWHLENLATLEVSKCHGLINVLT--L 294 (430)
Q Consensus 219 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~--l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~--~ 294 (430)
.-.+|+|++|.++..+.-........ ...+|+|+.|.+++... +.++ ..+..+.+|..|++.+|.... +.. .
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl--~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL~~Ldl~n~~~~~-l~dyre 136 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVL--AEKAPNLKVLNLSGNKIKDLSTL-RPLKELENLKSLDLFNCSVTN-LDDYRE 136 (260)
T ss_pred CCCcchhhhhcccCCcccccccceeh--hhhCCceeEEeecCCcccccccc-chhhhhcchhhhhcccCCccc-cccHHH
Confidence 34456666666665311111111111 13446777777666422 1222 224455666666666664332 111 1
Q ss_pred hhhccccccceEeeccc
Q 014145 295 STSESLVNLGRMKIADC 311 (430)
Q Consensus 295 ~~~~~l~~L~~L~l~~c 311 (430)
.++.-+++|.+|+-.++
T Consensus 137 ~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 137 KVFLLLPSLKYLDGCDV 153 (260)
T ss_pred HHHHHhhhhcccccccc
Confidence 12344566666665544
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.17 E-value=1 Score=36.15 Aligned_cols=10 Identities=10% Similarity=0.089 Sum_probs=3.0
Q ss_pred cCCccceeec
Q 014145 137 LFPKLFELTL 146 (430)
Q Consensus 137 ~l~~L~~L~l 146 (430)
.+++|+.+.+
T Consensus 33 ~~~~l~~i~~ 42 (129)
T PF13306_consen 33 NCTSLKSINF 42 (129)
T ss_dssp T-TT-SEEEE
T ss_pred cccccccccc
Confidence 3333333333
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.97 E-value=1.9 Score=34.52 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=5.9
Q ss_pred HHhcCCCCEEEEec
Q 014145 101 IRCLNNLRWLEVRN 114 (430)
Q Consensus 101 ~~~l~~L~~L~l~~ 114 (430)
+.++.+|+.+.+.+
T Consensus 31 F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 31 FSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT-SEEEESS
T ss_pred cccccccccccccc
Confidence 44454555555543
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.92 E-value=0.31 Score=24.23 Aligned_cols=15 Identities=7% Similarity=0.149 Sum_probs=6.7
Q ss_pred CccEEeeccCCCCccc
Q 014145 360 SLEHVVVRQCPTMKIF 375 (430)
Q Consensus 360 ~L~~L~l~~c~~l~~~ 375 (430)
+|+.|++++|. ++.+
T Consensus 2 ~L~~L~l~~n~-L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSL 16 (17)
T ss_dssp T-SEEEETSS---SSE
T ss_pred ccCEEECCCCC-CCCC
Confidence 45666666654 4444
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=87.00 E-value=0.11 Score=47.12 Aligned_cols=142 Identities=15% Similarity=0.182 Sum_probs=78.3
Q ss_pred cccCCCccEEEeccCCCccccc---------CCCceEEEecCCCCCccc------CCCceeeecCcccccccCCCCCCCC
Q 014145 162 IIEMPELRYLAIENCPDMETFI---------SNSVVHVTTDNKEPEKLT------SEENFFLTDQIQPLFDEKVAFPQLR 226 (430)
Q Consensus 162 ~~~~~~L~~L~l~~c~~l~~~~---------~~~L~~L~l~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~L~ 226 (430)
...||+|++.+++++..-..++ ...+++|.+++|.+..+. .+.++.+. .-...-|.|+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~n-------KKaa~kp~Le 160 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYN-------KKAADKPKLE 160 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHH-------hhhccCCCce
Confidence 4478888888888876333333 236888999888765432 01111100 0123456788
Q ss_pred EEecccCCCceeeccCCchhh-hhcccccEEEeecCCCccc-----ccCCcccCCCCCEEEEccCCCcccccCch---hh
Q 014145 227 YLELSRLHKVQHLWKENDESN-KAFANLIRLKISECSKLQK-----LVTPSWHLENLATLEVSKCHGLINVLTLS---TS 297 (430)
Q Consensus 227 ~L~l~~~~~l~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~-----l~~~l~~l~~L~~L~l~~c~~l~~l~~~~---~~ 297 (430)
...... +.+...+...++.. ..-.+|+.+.+.+...-.. +.-.+..+++|+.|++.+.. ++...+.. ..
T Consensus 161 ~vicgr-NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al 238 (388)
T COG5238 161 VVICGR-NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADAL 238 (388)
T ss_pred EEEecc-chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHh
Confidence 777766 34544332222111 2235788888887543221 12234577889999998753 22222111 12
Q ss_pred ccccccceEeecccc
Q 014145 298 ESLVNLGRMKIADCK 312 (430)
Q Consensus 298 ~~l~~L~~L~l~~c~ 312 (430)
...+.|+.|.+.+|-
T Consensus 239 ~~W~~lrEL~lnDCl 253 (388)
T COG5238 239 CEWNLLRELRLNDCL 253 (388)
T ss_pred cccchhhhccccchh
Confidence 344667888888884
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=83.89 E-value=0.76 Score=24.45 Aligned_cols=17 Identities=12% Similarity=0.133 Sum_probs=9.2
Q ss_pred ccEEeeccCCCCcccCCC
Q 014145 361 LEHVVVRQCPTMKIFSQG 378 (430)
Q Consensus 361 L~~L~l~~c~~l~~~~~~ 378 (430)
|++|++++| .++.+|..
T Consensus 2 L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp ESEEEETSS-EESEEGTT
T ss_pred ccEEECCCC-cCEeCChh
Confidence 556666665 44455543
No 72
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.29 E-value=0.72 Score=25.69 Aligned_cols=17 Identities=18% Similarity=0.450 Sum_probs=12.5
Q ss_pred CCCccEEeeccCCCCcc
Q 014145 358 FPSLEHVVVRQCPTMKI 374 (430)
Q Consensus 358 ~~~L~~L~l~~c~~l~~ 374 (430)
+|+|++|++++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46778888888877764
No 73
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=79.47 E-value=0.22 Score=40.62 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=30.7
Q ss_pred cCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 104 LNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 104 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
...|...++++| .++.+ |..+...+|.++.|++.+ +.+.++|.. ++.||.|+.|++..++
T Consensus 52 ~~el~~i~ls~N-~fk~f---------p~kft~kf~t~t~lNl~~-neisdvPeE---~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 52 GYELTKISLSDN-GFKKF---------PKKFTIKFPTATTLNLAN-NEISDVPEE---LAAMPALRSLNLRFNP 111 (177)
T ss_pred CceEEEEecccc-hhhhC---------CHHHhhccchhhhhhcch-hhhhhchHH---HhhhHHhhhcccccCc
Confidence 344555555555 23333 444444555556666655 344445433 5556666666665554
No 74
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=75.03 E-value=0.16 Score=41.47 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=40.1
Q ss_pred CCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCcc
Q 014145 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLP 150 (430)
Q Consensus 77 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~ 150 (430)
....|...++++. .+. .+|..+...++-++.|.+.+| .+..+ |+.+ ..+|.|+.|++..++
T Consensus 51 ~~~el~~i~ls~N-~fk-~fp~kft~kf~t~t~lNl~~n-eisdv---------PeE~-Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 51 KGYELTKISLSDN-GFK-KFPKKFTIKFPTATTLNLANN-EISDV---------PEEL-AAMPALRSLNLRFNP 111 (177)
T ss_pred CCceEEEEecccc-hhh-hCCHHHhhccchhhhhhcchh-hhhhc---------hHHH-hhhHHhhhcccccCc
Confidence 3445666677774 233 356565666777888888776 46666 6664 777888888888753
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=56.85 E-value=6.3 Score=21.63 Aligned_cols=11 Identities=45% Similarity=0.534 Sum_probs=5.5
Q ss_pred CCCCEEEEecC
Q 014145 105 NNLRWLEVRNC 115 (430)
Q Consensus 105 ~~L~~L~l~~~ 115 (430)
++|++|++++|
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00370 2 PNLRELDLSNN 12 (26)
T ss_pred CCCCEEECCCC
Confidence 34555555554
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=56.85 E-value=6.3 Score=21.63 Aligned_cols=11 Identities=45% Similarity=0.534 Sum_probs=5.5
Q ss_pred CCCCEEEEecC
Q 014145 105 NNLRWLEVRNC 115 (430)
Q Consensus 105 ~~L~~L~l~~~ 115 (430)
++|++|++++|
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00369 2 PNLRELDLSNN 12 (26)
T ss_pred CCCCEEECCCC
Confidence 34555555554
No 77
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=53.08 E-value=8.6 Score=35.37 Aligned_cols=102 Identities=16% Similarity=0.102 Sum_probs=54.2
Q ss_pred hhhhhhhcccCCCCcceeecccccCCe-e--eccCCCCCCCCCCCcceEEEeCCC--CCCccCchh------HHHhcCCC
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQ-E--IWHGQALPVSFFNNLRHLVVDDCT--NMLSAIPAN------LIRCLNNL 107 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~-~--~~~~~~~~~~~l~~L~~L~l~~c~--~l~~~~~~~------~~~~l~~L 107 (430)
..+.++..+.....++.++++++. +. + -|.+..+ ..-.+|+..++++-. ...+-.+.. .+-+||+|
T Consensus 18 Dvk~v~eel~~~d~~~evdLSGNt-igtEA~e~l~~~i--a~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l 94 (388)
T COG5238 18 DVKGVVEELEMMDELVEVDLSGNT-IGTEAMEELCNVI--ANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRL 94 (388)
T ss_pred hhhHHHHHHHhhcceeEEeccCCc-ccHHHHHHHHHHH--hhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcc
Confidence 344566666667889999999876 32 1 0221100 234566666666521 011111111 24468999
Q ss_pred CEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCc
Q 014145 108 RWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDL 149 (430)
Q Consensus 108 ~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~ 149 (430)
+..++|+|..-...+. .+ ..++..-+.|++|.+.+|
T Consensus 95 ~~v~LSDNAfg~~~~e--~L----~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 95 QKVDLSDNAFGSEFPE--EL----GDLISSSTDLVHLKLNNN 130 (388)
T ss_pred eeeeccccccCcccch--HH----HHHHhcCCCceeEEeecC
Confidence 9999998843322200 00 111344567888888775
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=50.75 E-value=9.7 Score=20.40 Aligned_cols=12 Identities=33% Similarity=0.418 Sum_probs=6.4
Q ss_pred CCCCEEEEecCC
Q 014145 105 NNLRWLEVRNCD 116 (430)
Q Consensus 105 ~~L~~L~l~~~~ 116 (430)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 566777776663
No 79
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=39.46 E-value=15 Score=19.13 Aligned_cols=19 Identities=21% Similarity=0.532 Sum_probs=13.1
Q ss_pred CcceeecccccCCeeeccCC
Q 014145 52 DIKYLQLGHFPRLQEIWHGQ 71 (430)
Q Consensus 52 ~L~~L~l~~~~~l~~~~~~~ 71 (430)
+|..|++.+.+ ++.+|.|.
T Consensus 1 ~LVeL~m~~S~-lekLW~G~ 19 (20)
T PF07725_consen 1 NLVELNMPYSK-LEKLWEGV 19 (20)
T ss_pred CcEEEECCCCC-hHHhcCcc
Confidence 46677777654 77777764
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=29.36 E-value=46 Score=18.57 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=11.1
Q ss_pred cCCCCEEEEecCCCccEe
Q 014145 104 LNNLRWLEVRNCDSLEEV 121 (430)
Q Consensus 104 l~~L~~L~l~~~~~l~~~ 121 (430)
+.+|++|++++| .++.+
T Consensus 1 L~~L~~L~L~~N-kI~~I 17 (26)
T smart00365 1 LTNLEELDLSQN-KIKKI 17 (26)
T ss_pred CCccCEEECCCC-cccee
Confidence 356788888777 35444
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=21.20 E-value=59 Score=18.22 Aligned_cols=12 Identities=33% Similarity=0.424 Sum_probs=8.4
Q ss_pred CCCCEEEEecCC
Q 014145 105 NNLRWLEVRNCD 116 (430)
Q Consensus 105 ~~L~~L~l~~~~ 116 (430)
++|++|++++|.
T Consensus 2 ~~L~~LdL~~N~ 13 (28)
T smart00368 2 PSLRELDLSNNK 13 (28)
T ss_pred CccCEEECCCCC
Confidence 457778887773
Done!