Query 014145
Match_columns 430
No_of_seqs 169 out of 2237
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 06:16:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014145.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014145hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 99.9 1.3E-20 4.5E-25 180.9 21.7 278 47-393 62-343 (347)
2 2id5_A Lingo-1, leucine rich r 99.9 4.5E-20 1.5E-24 185.0 23.9 303 39-394 22-331 (477)
3 3o6n_A APL1; leucine-rich repe 99.9 4.2E-20 1.4E-24 180.4 22.1 291 39-394 56-350 (390)
4 4fmz_A Internalin; leucine ric 99.8 1E-19 3.6E-24 174.6 21.0 277 49-394 42-322 (347)
5 3t6q_A CD180 antigen; protein- 99.8 8.2E-20 2.8E-24 188.5 20.8 134 46-199 52-193 (606)
6 1o6v_A Internalin A; bacterial 99.8 4.8E-19 1.6E-23 177.0 25.7 291 47-394 86-386 (466)
7 3oja_B Anopheles plasmodium-re 99.8 1.5E-19 5.1E-24 186.3 22.6 288 38-370 61-356 (597)
8 4eco_A Uncharacterized protein 99.8 1.2E-20 4.1E-25 195.8 13.5 321 38-395 193-578 (636)
9 3vq2_A TLR4, TOLL-like recepto 99.8 1.2E-19 4E-24 187.4 20.9 63 47-115 52-114 (606)
10 3t6q_A CD180 antigen; protein- 99.8 2.9E-18 9.8E-23 177.0 30.9 240 135-393 274-533 (606)
11 3rgz_A Protein brassinosteroid 99.8 1.5E-19 5E-24 191.7 20.0 241 43-313 285-550 (768)
12 3rgz_A Protein brassinosteroid 99.8 1.6E-19 5.6E-24 191.3 20.4 319 48-393 197-548 (768)
13 4eco_A Uncharacterized protein 99.8 8.1E-20 2.8E-24 189.5 17.4 311 43-394 239-598 (636)
14 3v47_A TOLL-like receptor 5B a 99.8 1.3E-18 4.5E-23 173.1 25.4 132 250-394 274-406 (455)
15 4ecn_A Leucine-rich repeat pro 99.8 2.3E-19 7.8E-24 190.5 20.9 233 136-394 570-838 (876)
16 4ecn_A Leucine-rich repeat pro 99.8 5.6E-20 1.9E-24 195.1 15.2 322 38-395 435-818 (876)
17 3o6n_A APL1; leucine-rich repe 99.8 8.4E-19 2.9E-23 171.1 21.2 269 39-370 80-350 (390)
18 3vq2_A TLR4, TOLL-like recepto 99.8 2E-18 7E-23 178.1 24.6 159 219-394 395-556 (606)
19 2z81_A CD282 antigen, TOLL-lik 99.8 1E-18 3.5E-23 178.1 21.5 159 222-394 333-508 (549)
20 2z7x_B TOLL-like receptor 1, v 99.8 2.9E-18 9.8E-23 173.7 24.6 156 220-394 321-479 (520)
21 4fcg_A Uncharacterized protein 99.8 1.2E-18 4.1E-23 166.0 18.3 219 49-308 79-308 (328)
22 3oja_B Anopheles plasmodium-re 99.8 2.2E-18 7.4E-23 177.6 21.1 264 39-344 86-356 (597)
23 1o6v_A Internalin A; bacterial 99.8 7.1E-18 2.4E-22 168.5 24.0 291 47-394 64-364 (466)
24 3bz5_A Internalin-J, INLJ; leu 99.8 4.8E-18 1.6E-22 169.1 22.3 272 46-393 59-349 (457)
25 2id5_A Lingo-1, leucine rich r 99.8 8.3E-18 2.8E-22 168.5 23.2 273 76-394 29-307 (477)
26 2z63_A TOLL-like receptor 4, v 99.8 7.3E-18 2.5E-22 172.5 22.9 135 248-394 393-529 (570)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.2E-17 4.1E-22 170.9 24.1 153 220-394 350-508 (562)
28 2z63_A TOLL-like receptor 4, v 99.8 1.1E-18 3.9E-23 178.5 15.6 133 46-199 47-191 (570)
29 2z81_A CD282 antigen, TOLL-lik 99.8 1.5E-18 5.2E-23 176.9 16.0 109 276-393 311-420 (549)
30 1ziw_A TOLL-like receptor 3; i 99.8 4.8E-18 1.6E-22 177.7 18.9 134 47-200 45-186 (680)
31 3bz5_A Internalin-J, INLJ; leu 99.8 7.7E-18 2.6E-22 167.6 18.8 250 47-369 81-349 (457)
32 2z7x_B TOLL-like receptor 1, v 99.8 1.4E-17 4.7E-22 168.7 20.8 133 249-394 322-455 (520)
33 3v47_A TOLL-like receptor 5B a 99.8 9.4E-18 3.2E-22 166.9 18.3 323 39-394 21-382 (455)
34 3j0a_A TOLL-like receptor 5; m 99.8 1.8E-17 6.3E-22 177.4 21.7 92 44-149 66-158 (844)
35 4fcg_A Uncharacterized protein 99.8 2E-17 6.7E-22 157.6 18.1 232 77-368 79-310 (328)
36 1ziw_A TOLL-like receptor 3; i 99.8 4.2E-17 1.5E-21 170.5 22.3 324 40-393 16-391 (680)
37 1xku_A Decorin; proteoglycan, 99.8 6.3E-17 2.2E-21 154.1 21.2 154 220-392 168-328 (330)
38 2ft3_A Biglycan; proteoglycan, 99.8 6.6E-17 2.2E-21 154.2 20.9 284 52-393 34-330 (332)
39 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 6.7E-17 2.3E-21 165.3 21.2 317 39-394 42-484 (562)
40 3j0a_A TOLL-like receptor 5; m 99.7 1.3E-16 4.5E-21 170.8 24.1 316 40-393 16-391 (844)
41 2ft3_A Biglycan; proteoglycan, 99.7 6.5E-17 2.2E-21 154.2 18.9 277 39-370 44-331 (332)
42 1xku_A Decorin; proteoglycan, 99.7 3.3E-16 1.1E-20 149.1 23.1 106 248-369 168-273 (330)
43 3zyi_A Leucine-rich repeat-con 99.7 9.3E-17 3.2E-21 159.8 19.9 231 39-312 65-301 (452)
44 3zyj_A Leucine-rich repeat-con 99.7 1.3E-16 4.5E-21 158.1 20.7 232 38-312 53-290 (440)
45 3g06_A SSPH2 (leucine-rich rep 99.7 3.7E-16 1.3E-20 160.5 23.4 254 51-394 40-295 (622)
46 1ogq_A PGIP-2, polygalacturona 99.7 3.6E-17 1.2E-21 154.7 13.5 107 51-177 50-160 (313)
47 2z80_A TOLL-like receptor 2, v 99.7 1.4E-16 4.7E-21 153.3 16.6 256 78-394 51-312 (353)
48 4g8a_A TOLL-like receptor 4; l 99.7 1.1E-15 3.7E-20 158.1 24.0 134 250-394 444-578 (635)
49 3g06_A SSPH2 (leucine-rich rep 99.7 1E-15 3.5E-20 157.3 21.6 245 39-372 51-297 (622)
50 2z80_A TOLL-like receptor 2, v 99.7 1.3E-16 4.6E-21 153.3 14.2 270 38-371 41-313 (353)
51 1ogq_A PGIP-2, polygalacturona 99.7 1.6E-16 5.6E-21 150.2 13.8 248 79-393 50-301 (313)
52 1ozn_A Reticulon 4 receptor; N 99.7 4.1E-16 1.4E-20 145.3 16.0 207 50-313 31-237 (285)
53 1jl5_A Outer protein YOPM; leu 99.7 1.7E-15 5.9E-20 150.5 21.2 155 79-285 131-287 (454)
54 3o53_A Protein LRIM1, AGAP0063 99.7 4.7E-17 1.6E-21 154.2 9.4 112 37-177 19-131 (317)
55 4g8a_A TOLL-like receptor 4; l 99.7 3.1E-15 1.1E-19 154.6 22.5 87 298-394 466-553 (635)
56 3zyi_A Leucine-rich repeat-con 99.7 4.9E-15 1.7E-19 147.3 22.7 178 79-311 75-252 (452)
57 1jl5_A Outer protein YOPM; leu 99.7 6.4E-15 2.2E-19 146.4 22.9 291 79-422 91-410 (454)
58 3zyj_A Leucine-rich repeat-con 99.7 6.1E-15 2.1E-19 146.1 22.0 181 76-311 61-241 (440)
59 2z66_A Variable lymphocyte rec 99.6 3.4E-15 1.2E-19 140.5 17.2 214 39-312 18-234 (306)
60 3o53_A Protein LRIM1, AGAP0063 99.6 2.6E-16 8.9E-21 149.1 8.9 243 77-375 32-278 (317)
61 4ay9_X Follicle-stimulating ho 99.6 4.3E-15 1.5E-19 142.7 17.5 230 38-310 19-255 (350)
62 2xwt_C Thyrotropin receptor; s 99.6 1.1E-14 3.6E-19 132.0 15.5 202 51-313 31-238 (239)
63 2xwt_C Thyrotropin receptor; s 99.6 1.8E-14 6.1E-19 130.6 16.7 180 79-311 31-215 (239)
64 2z66_A Variable lymphocyte rec 99.6 2.7E-14 9.1E-19 134.3 18.2 183 77-311 26-209 (306)
65 2p1m_B Transport inhibitor res 99.6 4.4E-17 1.5E-21 167.5 -1.3 149 32-195 89-245 (594)
66 3oja_A Leucine-rich immune mol 99.6 1.8E-15 6.3E-20 151.7 10.5 235 77-367 32-270 (487)
67 1ozn_A Reticulon 4 receptor; N 99.6 4.6E-14 1.6E-18 131.4 18.8 207 76-344 29-236 (285)
68 3ogk_B Coronatine-insensitive 99.6 1.6E-16 5.6E-21 163.3 1.9 337 32-394 96-474 (592)
69 4ay9_X Follicle-stimulating ho 99.6 3.9E-14 1.3E-18 136.0 18.4 225 78-367 29-254 (350)
70 3ogk_B Coronatine-insensitive 99.6 5E-16 1.7E-20 159.6 5.0 318 48-392 70-445 (592)
71 2p1m_B Transport inhibitor res 99.6 3.4E-16 1.2E-20 160.9 3.4 139 48-196 63-222 (594)
72 3oja_A Leucine-rich immune mol 99.6 2.3E-14 7.8E-19 143.7 15.9 212 49-314 32-250 (487)
73 1z7x_W Ribonuclease inhibitor; 99.6 5.4E-17 1.9E-21 161.6 -5.0 149 40-199 45-213 (461)
74 2o6q_A Variable lymphocyte rec 99.5 1.6E-13 5.6E-18 126.6 17.8 199 52-312 17-216 (270)
75 2z62_A TOLL-like receptor 4, v 99.5 2.8E-13 9.5E-18 125.4 17.3 213 40-312 19-235 (276)
76 1p9a_G Platelet glycoprotein I 99.5 4.5E-13 1.5E-17 125.0 17.8 199 47-311 6-205 (290)
77 2ast_B S-phase kinase-associat 99.5 9.7E-15 3.3E-19 139.1 5.2 234 51-351 70-310 (336)
78 1h6u_A Internalin H; cell adhe 99.5 2.4E-13 8.3E-18 128.0 14.5 189 50-312 40-228 (308)
79 3rfs_A Internalin B, repeat mo 99.5 1.6E-13 5.5E-18 126.8 13.1 60 221-285 155-215 (272)
80 1h6u_A Internalin H; cell adhe 99.5 3.8E-13 1.3E-17 126.7 15.5 195 76-349 38-232 (308)
81 1z7x_W Ribonuclease inhibitor; 99.5 4.7E-16 1.6E-20 154.8 -5.8 318 48-394 25-381 (461)
82 2z62_A TOLL-like receptor 4, v 99.5 8.7E-13 3E-17 122.0 16.6 191 40-286 40-235 (276)
83 2o6q_A Variable lymphocyte rec 99.5 7.4E-13 2.5E-17 122.2 15.9 189 39-286 27-216 (270)
84 2ast_B S-phase kinase-associat 99.5 3.7E-14 1.3E-18 135.1 6.5 245 52-343 23-282 (336)
85 1wwl_A Monocyte differentiatio 99.4 4.8E-14 1.7E-18 133.1 5.2 108 220-343 198-306 (312)
86 1wwl_A Monocyte differentiatio 99.4 2E-12 6.9E-17 121.9 15.2 198 78-312 94-307 (312)
87 1p9a_G Platelet glycoprotein I 99.4 5.3E-12 1.8E-16 117.8 17.7 200 76-345 7-207 (290)
88 2ca6_A RAN GTPase-activating p 99.4 6.4E-14 2.2E-18 136.3 4.1 268 27-344 8-314 (386)
89 3rfs_A Internalin B, repeat mo 99.4 1.3E-11 4.5E-16 113.9 16.0 178 76-312 38-216 (272)
90 4glp_A Monocyte differentiatio 99.4 8.2E-12 2.8E-16 117.6 14.6 85 220-312 221-305 (310)
91 3m19_A Variable lymphocyte rec 99.3 1.7E-11 5.7E-16 111.8 15.5 174 52-285 15-189 (251)
92 1h6t_A Internalin B; cell adhe 99.3 2.8E-11 9.5E-16 112.9 13.7 169 76-312 43-211 (291)
93 4ezg_A Putative uncharacterize 99.3 2.8E-11 9.4E-16 106.1 11.6 59 248-311 133-191 (197)
94 1h6t_A Internalin B; cell adhe 99.3 4.3E-11 1.5E-15 111.6 13.5 168 49-286 44-211 (291)
95 4glp_A Monocyte differentiatio 99.3 4.5E-12 1.5E-16 119.4 6.8 229 79-344 64-305 (310)
96 3m19_A Variable lymphocyte rec 99.2 1.9E-10 6.6E-15 104.7 15.7 177 79-313 14-191 (251)
97 1m9s_A Internalin B; cell inva 99.2 5.3E-11 1.8E-15 122.0 13.0 184 50-285 20-207 (605)
98 1m9s_A Internalin B; cell inva 99.2 4.3E-11 1.5E-15 122.7 11.7 165 49-263 41-209 (605)
99 4ezg_A Putative uncharacterize 99.2 7.5E-11 2.6E-15 103.3 11.4 150 49-261 42-191 (197)
100 3goz_A Leucine-rich repeat-con 99.2 4.2E-12 1.4E-16 122.3 2.7 89 50-150 21-120 (362)
101 2ca6_A RAN GTPase-activating p 99.2 3.5E-12 1.2E-16 123.9 2.2 140 223-372 159-316 (386)
102 3cvr_A Invasion plasmid antige 99.1 4.8E-10 1.6E-14 113.8 15.6 115 51-200 59-175 (571)
103 3goz_A Leucine-rich repeat-con 99.1 1.5E-11 5E-16 118.5 2.0 240 78-344 21-295 (362)
104 2o6s_A Variable lymphocyte rec 99.1 5.8E-10 2E-14 98.4 11.6 35 79-115 28-62 (208)
105 1xeu_A Internalin C; cellular 99.1 2.2E-10 7.4E-15 105.2 8.6 109 39-176 8-116 (263)
106 2v70_A SLIT-2, SLIT homolog 2 99.1 1.3E-09 4.5E-14 97.1 13.4 60 79-149 32-91 (220)
107 3cvr_A Invasion plasmid antige 99.1 1.7E-09 5.9E-14 109.7 15.8 178 79-316 59-245 (571)
108 2o6s_A Variable lymphocyte rec 99.1 1.7E-09 5.8E-14 95.3 13.0 149 104-312 27-176 (208)
109 1xeu_A Internalin C; cellular 99.0 8.6E-10 2.9E-14 101.1 10.5 107 47-182 37-143 (263)
110 2v9t_B SLIT homolog 2 protein 99.0 4.9E-09 1.7E-13 93.3 13.4 12 273-284 150-161 (220)
111 3e6j_A Variable lymphocyte rec 99.0 2.7E-09 9.3E-14 95.6 11.7 115 40-176 31-145 (229)
112 2xot_A Amphoterin-induced prot 99.0 3.2E-09 1.1E-13 102.1 11.6 118 40-177 30-147 (361)
113 3e6j_A Variable lymphocyte rec 99.0 6.3E-09 2.2E-13 93.2 12.8 60 78-149 39-98 (229)
114 2xot_A Amphoterin-induced prot 98.9 8.7E-09 3E-13 99.0 14.4 85 220-311 109-199 (361)
115 2v9t_B SLIT homolog 2 protein 98.9 1.5E-08 5.2E-13 90.1 14.6 37 221-261 126-162 (220)
116 2v70_A SLIT-2, SLIT homolog 2 98.9 2.1E-08 7.2E-13 89.2 13.7 149 82-285 14-163 (220)
117 1dce_A Protein (RAB geranylger 98.9 5.6E-11 1.9E-15 121.0 -3.8 106 183-312 439-544 (567)
118 3sb4_A Hypothetical leucine ri 98.9 2.6E-08 8.9E-13 94.3 14.5 86 222-317 225-312 (329)
119 3sb4_A Hypothetical leucine ri 98.8 2.5E-08 8.6E-13 94.4 12.3 102 273-389 224-327 (329)
120 2ell_A Acidic leucine-rich nuc 98.8 1.2E-08 4E-13 86.6 7.2 131 222-370 23-158 (168)
121 2ell_A Acidic leucine-rich nuc 98.7 2.4E-08 8.3E-13 84.6 7.5 133 248-394 21-158 (168)
122 1a9n_A U2A', U2A'; complex (nu 98.7 4.9E-08 1.7E-12 83.5 9.3 88 219-312 60-151 (176)
123 2je0_A Acidic leucine-rich nuc 98.7 3.6E-08 1.2E-12 81.7 8.2 84 220-309 61-148 (149)
124 2je0_A Acidic leucine-rich nuc 98.7 1.9E-08 6.4E-13 83.5 6.3 85 220-311 39-123 (149)
125 1w8a_A SLIT protein; signaling 98.7 6.6E-08 2.3E-12 84.0 9.2 117 40-177 20-137 (192)
126 1w8a_A SLIT protein; signaling 98.6 1.8E-07 6.3E-12 81.1 11.5 103 54-177 11-113 (192)
127 2wfh_A SLIT homolog 2 protein 98.6 8.2E-08 2.8E-12 83.5 8.6 116 40-177 22-137 (193)
128 1a9n_A U2A', U2A'; complex (nu 98.6 2E-07 7E-12 79.6 9.2 82 223-312 42-124 (176)
129 4fdw_A Leucine rich hypothetic 98.6 9.2E-06 3.2E-10 78.8 21.8 253 79-390 113-377 (401)
130 2wfh_A SLIT homolog 2 protein 98.5 5.9E-07 2E-11 78.0 11.6 87 219-312 50-137 (193)
131 2o6r_A Variable lymphocyte rec 98.5 8.1E-07 2.8E-11 75.8 11.6 84 78-176 27-110 (177)
132 2o6r_A Variable lymphocyte rec 98.5 1.4E-06 4.8E-11 74.3 12.1 86 220-312 49-135 (177)
133 4fdw_A Leucine rich hypothetic 98.4 2.6E-05 8.9E-10 75.6 21.1 211 51-311 135-355 (401)
134 4b8c_D Glucose-repressible alc 98.4 2.5E-07 8.6E-12 96.9 7.3 115 40-177 213-327 (727)
135 1dce_A Protein (RAB geranylger 98.4 6.4E-07 2.2E-11 91.1 10.1 186 38-281 359-566 (567)
136 4b8c_D Glucose-repressible alc 98.4 8.9E-08 3.1E-12 100.4 3.5 107 100-238 219-330 (727)
137 3e4g_A ATP synthase subunit S, 98.3 4.4E-07 1.5E-11 76.8 5.0 18 273-290 83-100 (176)
138 3g39_A Variable lymphocyte rec 98.3 2.1E-06 7.2E-11 72.8 8.9 103 53-177 11-113 (170)
139 2r9u_A Variable lymphocyte rec 98.3 2.8E-06 9.6E-11 72.3 8.9 85 78-177 32-116 (174)
140 4fs7_A Uncharacterized protein 98.2 9.6E-05 3.3E-09 71.4 20.4 284 49-390 69-373 (394)
141 3e4g_A ATP synthase subunit S, 98.2 1.1E-06 3.9E-11 74.3 5.3 94 275-374 61-154 (176)
142 1ds9_A Outer arm dynein; leuci 98.2 3E-08 1E-12 86.6 -5.2 115 40-177 37-151 (198)
143 1ds9_A Outer arm dynein; leuci 98.2 4.1E-08 1.4E-12 85.7 -4.4 15 101-115 44-58 (198)
144 4fs7_A Uncharacterized protein 98.1 0.0002 7E-09 69.1 18.8 59 76-148 68-126 (394)
145 3g39_A Variable lymphocyte rec 98.1 2E-05 6.9E-10 66.6 10.0 83 222-311 29-112 (170)
146 2r9u_A Variable lymphocyte rec 98.0 3.3E-05 1.1E-09 65.6 10.1 82 223-311 33-115 (174)
147 2ifg_A High affinity nerve gro 97.9 2E-05 6.8E-10 74.8 8.0 94 39-149 20-113 (347)
148 2ra8_A Uncharacterized protein 97.9 1.6E-05 5.4E-10 75.9 6.4 68 220-290 249-321 (362)
149 2ifg_A High affinity nerve gro 97.8 3.6E-05 1.2E-09 72.9 8.3 102 56-177 13-114 (347)
150 3un9_A NLR family member X1; l 97.8 7.7E-07 2.6E-11 85.6 -4.0 43 220-263 208-251 (372)
151 2ra8_A Uncharacterized protein 97.7 1.9E-05 6.7E-10 75.3 4.7 15 101-115 135-149 (362)
152 4gt6_A Cell surface protein; l 97.6 0.012 4.2E-07 56.4 22.6 103 273-392 263-366 (394)
153 3un9_A NLR family member X1; l 97.6 6.9E-06 2.4E-10 78.9 -0.7 70 220-291 180-254 (372)
154 4gt6_A Cell surface protein; l 97.5 0.019 6.4E-07 55.1 22.4 142 224-390 243-385 (394)
155 4h09_A Hypothetical leucine ri 97.0 0.12 4.2E-06 48.9 21.4 77 223-309 217-294 (379)
156 4h09_A Hypothetical leucine ri 96.6 0.47 1.6E-05 44.8 24.8 56 248-308 214-270 (379)
157 3rw6_A Nuclear RNA export fact 95.5 0.013 4.6E-07 52.9 5.0 38 77-115 168-206 (267)
158 1io0_A Tropomodulin; LRR prote 95.0 0.0071 2.4E-07 51.5 1.5 91 220-312 62-162 (185)
159 1io0_A Tropomodulin; LRR prote 95.0 0.0052 1.8E-07 52.3 0.6 64 222-286 92-162 (185)
160 3rw6_A Nuclear RNA export fact 94.7 0.033 1.1E-06 50.3 5.1 12 273-284 194-205 (267)
161 3rfe_A Platelet glycoprotein I 80.3 3 0.0001 32.7 5.6 34 223-260 31-64 (130)
162 3rfe_A Platelet glycoprotein I 80.1 1.5 5.2E-05 34.4 3.8 34 80-115 32-65 (130)
163 1pgv_A TMD-1, tropomodulin TMD 70.9 2 7E-05 36.5 2.4 65 220-285 67-136 (197)
164 1pgv_A TMD-1, tropomodulin TMD 48.8 12 0.00042 31.6 3.3 13 103-115 39-51 (197)
165 2lz0_A Uncharacterized protein 28.0 70 0.0024 23.4 4.2 40 132-175 13-52 (100)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=1.3e-20 Score=180.85 Aligned_cols=278 Identities=16% Similarity=0.224 Sum_probs=163.9
Q ss_pred ccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccc
Q 014145 47 MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEE 126 (430)
Q Consensus 47 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 126 (430)
+..+++|++|+++++. +..+.. ...+++|++|++++| .+..+ +. +..+++|++|++++|. +..+
T Consensus 62 ~~~~~~L~~L~l~~n~-i~~~~~-----~~~l~~L~~L~L~~n-~i~~~-~~--~~~l~~L~~L~l~~n~-i~~~----- 125 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQ-ITDISP-----LSNLVKLTNLYIGTN-KITDI-SA--LQNLTNLRELYLNEDN-ISDI----- 125 (347)
T ss_dssp GGGCTTCCEEECCSSC-CCCCGG-----GTTCTTCCEEECCSS-CCCCC-GG--GTTCTTCSEEECTTSC-CCCC-----
T ss_pred hhhcCCccEEEccCCc-cccchh-----hhcCCcCCEEEccCC-cccCc-hH--HcCCCcCCEEECcCCc-ccCc-----
Confidence 3455666666666554 444322 145666666666665 33332 21 4556666666666653 3333
Q ss_pred ccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc----CCCceEEEecCCCCCcccC
Q 014145 127 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTS 202 (430)
Q Consensus 127 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~ 202 (430)
+. +..+++|++|+++++..+..++. +..+++|++|.+.+|. ++..+ .++|+.|++++|.+.++.
T Consensus 126 ----~~--~~~l~~L~~L~l~~n~~~~~~~~----~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~- 193 (347)
T 4fmz_A 126 ----SP--LANLTKMYSLNLGANHNLSDLSP----LSNMTGLNYLTVTESK-VKDVTPIANLTDLYSLSLNYNQIEDIS- 193 (347)
T ss_dssp ----GG--GTTCTTCCEEECTTCTTCCCCGG----GTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECTTSCCCCCG-
T ss_pred ----hh--hccCCceeEEECCCCCCcccccc----hhhCCCCcEEEecCCC-cCCchhhccCCCCCEEEccCCcccccc-
Confidence 11 25566666666666655544432 4566666666666654 33222 456666666666655433
Q ss_pred CCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEE
Q 014145 203 EENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEV 282 (430)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l 282 (430)
....+++|+.|+++++ .+..+.. + ..+++|++|++++|. +..++. +..+++|++|++
T Consensus 194 ---------------~~~~l~~L~~L~l~~n-~l~~~~~--~---~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l 250 (347)
T 4fmz_A 194 ---------------PLASLTSLHYFTAYVN-QITDITP--V---ANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEI 250 (347)
T ss_dssp ---------------GGGGCTTCCEEECCSS-CCCCCGG--G---GGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEEC
T ss_pred ---------------cccCCCccceeecccC-CCCCCch--h---hcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEEC
Confidence 2456777888888775 4444322 2 677888888888863 444443 667788888888
Q ss_pred ccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCcc
Q 014145 283 SKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLE 362 (430)
Q Consensus 283 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~ 362 (430)
++| .+..++ .+..+++|++|++++|. +.++. ....+++|++|++++|. ++..... ....+++|+
T Consensus 251 ~~n-~l~~~~---~~~~l~~L~~L~l~~n~-l~~~~---------~~~~l~~L~~L~L~~n~-l~~~~~~-~l~~l~~L~ 314 (347)
T 4fmz_A 251 GTN-QISDIN---AVKDLTKLKMLNVGSNQ-ISDIS---------VLNNLSQLNSLFLNNNQ-LGNEDME-VIGGLTNLT 314 (347)
T ss_dssp CSS-CCCCCG---GGTTCTTCCEEECCSSC-CCCCG---------GGGGCTTCSEEECCSSC-CCGGGHH-HHHTCTTCS
T ss_pred CCC-ccCCCh---hHhcCCCcCEEEccCCc-cCCCh---------hhcCCCCCCEEECcCCc-CCCcChh-HhhccccCC
Confidence 876 455543 35667788888887763 33332 12237788888888873 4433321 223478888
Q ss_pred EEeeccCCCCcccCCCCcCCCCceeeecccc
Q 014145 363 HVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 393 (430)
Q Consensus 363 ~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~ 393 (430)
+|++++|+ ++.++. ...+++|+++++.++
T Consensus 315 ~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 315 TLFLSQNH-ITDIRP-LASLSKMDSADFANQ 343 (347)
T ss_dssp EEECCSSS-CCCCGG-GGGCTTCSEESSSCC
T ss_pred EEEccCCc-cccccC-hhhhhccceeehhhh
Confidence 88888875 444433 556788888888654
No 2
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=4.5e-20 Score=185.02 Aligned_cols=303 Identities=17% Similarity=0.151 Sum_probs=223.1
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
.+..+|.++ .++++.|+++++. ++.+.... ...+++|++|+++++ .+..+.+.. +.++++|++|++++| .+
T Consensus 22 ~l~~ip~~~--~~~l~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l 92 (477)
T 2id5_A 22 RFVAVPEGI--PTETRLLDLGKNR-IKTLNQDE---FASFPHLEELELNEN-IVSAVEPGA-FNNLFNLRTLGLRSN-RL 92 (477)
T ss_dssp CCSSCCSCC--CTTCSEEECCSSC-CCEECTTT---TTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CC
T ss_pred CcCcCCCCC--CCCCcEEECCCCc-cceECHhH---ccCCCCCCEEECCCC-ccCEeChhh-hhCCccCCEEECCCC-cC
Confidence 355566554 3589999999887 77654322 256899999999997 466654543 778999999999998 46
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc------CCCceEEEe
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTT 192 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~l 192 (430)
..+ |.+.+..+++|++|+++++......+.. +..+++|++|++.++. ++... .++|+.|++
T Consensus 93 ~~~---------~~~~~~~l~~L~~L~Ls~n~i~~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 93 KLI---------PLGVFTGLSNLTKLDISENKIVILLDYM---FQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTL 159 (477)
T ss_dssp CSC---------CTTSSTTCTTCCEEECTTSCCCEECTTT---TTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEE
T ss_pred Ccc---------CcccccCCCCCCEEECCCCccccCChhH---ccccccCCEEECCCCc-cceeChhhccCCCCCCEEEC
Confidence 665 5565688999999999986433322222 6789999999999876 54443 468999999
Q ss_pred cCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcc
Q 014145 193 DNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSW 272 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~ 272 (430)
++|.+..+.+ .....+++|+.|+++++ .+..+....+ ..+++|+.|++++++.+..++....
T Consensus 160 ~~n~l~~~~~--------------~~l~~l~~L~~L~l~~n-~i~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~~ 221 (477)
T 2id5_A 160 EKCNLTSIPT--------------EALSHLHGLIVLRLRHL-NINAIRDYSF---KRLYRLKVLEISHWPYLDTMTPNCL 221 (477)
T ss_dssp ESCCCSSCCH--------------HHHTTCTTCCEEEEESC-CCCEECTTCS---CSCTTCCEEEEECCTTCCEECTTTT
T ss_pred CCCcCcccCh--------------hHhcccCCCcEEeCCCC-cCcEeChhhc---ccCcccceeeCCCCccccccCcccc
Confidence 9998776541 12467889999999985 6677766666 7889999999999988888887777
Q ss_pred cCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccC
Q 014145 273 HLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLG 352 (430)
Q Consensus 273 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 352 (430)
...+|++|++++| .++.++.. .+..+++|++|+++++. +..+.. .....+++|++|++.++ .++.+...
T Consensus 222 ~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~-------~~~~~l~~L~~L~L~~n-~l~~~~~~ 290 (477)
T 2id5_A 222 YGLNLTSLSITHC-NLTAVPYL-AVRHLVYLRFLNLSYNP-ISTIEG-------SMLHELLRLQEIQLVGG-QLAVVEPY 290 (477)
T ss_dssp TTCCCSEEEEESS-CCCSCCHH-HHTTCTTCCEEECCSSC-CCEECT-------TSCTTCTTCCEEECCSS-CCSEECTT
T ss_pred cCccccEEECcCC-cccccCHH-HhcCccccCeeECCCCc-CCccCh-------hhccccccCCEEECCCC-ccceECHH
Confidence 7779999999997 46666533 35778999999999875 443321 11223789999999986 66666542
Q ss_pred CcccCCCCccEEeeccCCCCcccCCC-CcCCCCceeeeccccC
Q 014145 353 NYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEEE 394 (430)
Q Consensus 353 ~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~l~l~~~~ 394 (430)
....+++|++|+++++ .++.++.. +..+++|++|++.+++
T Consensus 291 -~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 291 -AFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp -TBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred -HhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 2346899999999987 56666653 4678899999997754
No 3
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=4.2e-20 Score=180.38 Aligned_cols=291 Identities=15% Similarity=0.161 Sum_probs=191.0
Q ss_pred hhhhhhhc-ccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCC
Q 014145 39 TIQKCYEE-MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 39 ~~~~l~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 117 (430)
.++.+|.. +..+++|++|+++++. ++.+.... ...+++|++|+++++. +..+++. .+.++++|++|++++| .
T Consensus 56 ~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~ 128 (390)
T 3o6n_A 56 TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYA---FAYAHTIQKLYMGFNA-IRYLPPH-VFQNVPLLTVLVLERN-D 128 (390)
T ss_dssp EESEECTHHHHHCCCCSEEECTTSC-CCEECTTT---TTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSS-C
T ss_pred chhhCChhHhcccccCcEEECCCCc-ccccChhh---ccCCCCcCEEECCCCC-CCcCCHH-HhcCCCCCCEEECCCC-c
Confidence 35555555 3467888888888776 66543322 1567888888888873 5554443 3667888888888887 4
Q ss_pred ccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc---CCCceEEEecC
Q 014145 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDN 194 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~ 194 (430)
+..+ |.+++..+++|++|+++++. +..++.. .+..+++|++|++.++. ++..+ .++|+.+++++
T Consensus 129 l~~l---------~~~~~~~l~~L~~L~L~~n~-l~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 129 LSSL---------PRGIFHNTPKLTTLSMSNNN-LERIEDD--TFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSY 195 (390)
T ss_dssp CCCC---------CTTTTTTCTTCCEEECCSSC-CCBCCTT--TTSSCTTCCEEECCSSC-CSBCCGGGCTTCSEEECCS
T ss_pred cCcC---------CHHHhcCCCCCcEEECCCCc-cCccChh--hccCCCCCCEEECCCCc-CCccccccccccceeeccc
Confidence 5555 55555778888888888763 4334221 15677888888888765 54443 56777888877
Q ss_pred CCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccC
Q 014145 195 KEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHL 274 (430)
Q Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l 274 (430)
+.+..+. ..++|++|+++++ .+..++. ..+++|+.|+++++. +... ..+..+
T Consensus 196 n~l~~~~-------------------~~~~L~~L~l~~n-~l~~~~~------~~~~~L~~L~l~~n~-l~~~-~~l~~l 247 (390)
T 3o6n_A 196 NLLSTLA-------------------IPIAVEELDASHN-SINVVRG------PVNVELTILKLQHNN-LTDT-AWLLNY 247 (390)
T ss_dssp SCCSEEE-------------------CCSSCSEEECCSS-CCCEEEC------CCCSSCCEEECCSSC-CCCC-GGGGGC
T ss_pred ccccccC-------------------CCCcceEEECCCC-eeeeccc------cccccccEEECCCCC-Cccc-HHHcCC
Confidence 7665532 3457888888875 5555532 334788888888864 3433 356678
Q ss_pred CCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCc
Q 014145 275 ENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNY 354 (430)
Q Consensus 275 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~ 354 (430)
++|++|+++++. +..+... .+..+++|++|+++++. +..+.. ....+++|++|+++++ .++.++..
T Consensus 248 ~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~--------~~~~l~~L~~L~L~~n-~l~~~~~~-- 313 (390)
T 3o6n_A 248 PGLVEVDLSYNE-LEKIMYH-PFVKMQRLERLYISNNR-LVALNL--------YGQPIPTLKVLDLSHN-HLLHVERN-- 313 (390)
T ss_dssp TTCSEEECCSSC-CCEEESG-GGTTCSSCCEEECCSSC-CCEEEC--------SSSCCTTCCEEECCSS-CCCCCGGG--
T ss_pred CCccEEECCCCc-CCCcChh-HccccccCCEEECCCCc-CcccCc--------ccCCCCCCCEEECCCC-cceecCcc--
Confidence 888888888864 4444332 35677888888888764 333321 1233788888888887 56666542
Q ss_pred ccCCCCccEEeeccCCCCcccCCCCcCCCCceeeeccccC
Q 014145 355 ALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 355 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 394 (430)
...+++|++|++++|. ++.++ ...+++|++|++.+++
T Consensus 314 ~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 314 QPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp HHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred ccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCC
Confidence 2347888889888874 55554 4467888888886543
No 4
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=1e-19 Score=174.58 Aligned_cols=277 Identities=12% Similarity=0.165 Sum_probs=212.2
Q ss_pred CCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccccc
Q 014145 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 128 (430)
.+++|++|++.++. +..+. +. ..+++|++|++++| .+..+++ +..+++|++|++++| .+..+
T Consensus 42 ~l~~L~~L~l~~~~-i~~~~-~~----~~~~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n-~i~~~------- 103 (347)
T 4fmz_A 42 ELESITKLVVAGEK-VASIQ-GI----EYLTNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTN-KITDI------- 103 (347)
T ss_dssp HHTTCSEEECCSSC-CCCCT-TG----GGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCC-------
T ss_pred hcccccEEEEeCCc-cccch-hh----hhcCCccEEEccCC-ccccchh---hhcCCcCCEEEccCC-cccCc-------
Confidence 57899999999876 66532 12 57899999999998 5666444 678999999999998 45554
Q ss_pred CCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc----CCCceEEEecCCCCCcccCCC
Q 014145 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTSEE 204 (430)
Q Consensus 129 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~~~ 204 (430)
+ . +..+++|++|+++++ .+..++. +..+++|++|++.+|..+...+ .++|+.|++++|.+..+.
T Consensus 104 --~-~-~~~l~~L~~L~l~~n-~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--- 171 (347)
T 4fmz_A 104 --S-A-LQNLTNLRELYLNED-NISDISP----LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT--- 171 (347)
T ss_dssp --G-G-GTTCTTCSEEECTTS-CCCCCGG----GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCG---
T ss_pred --h-H-HcCCCcCCEEECcCC-cccCchh----hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCch---
Confidence 2 2 478899999999986 4555543 6789999999999998777655 578999999999877655
Q ss_pred ceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEcc
Q 014145 205 NFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSK 284 (430)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~ 284 (430)
....+++|++|+++++ .++.+.. + ..+++|+.|+++++. +..++. +..+++|++|++++
T Consensus 172 -------------~~~~l~~L~~L~l~~n-~l~~~~~--~---~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 172 -------------PIANLTDLYSLSLNYN-QIEDISP--L---ASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGN 230 (347)
T ss_dssp -------------GGGGCTTCSEEECTTS-CCCCCGG--G---GGCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCS
T ss_pred -------------hhccCCCCCEEEccCC-ccccccc--c---cCCCccceeecccCC-CCCCch-hhcCCcCCEEEccC
Confidence 2467899999999996 5555433 3 788999999999974 444433 67889999999999
Q ss_pred CCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEE
Q 014145 285 CHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHV 364 (430)
Q Consensus 285 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L 364 (430)
|. +..++. +..+++|++|++++|. +..+. ....+++|++|++.++ .+++++. ...+++|++|
T Consensus 231 n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~---------~~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L 292 (347)
T 4fmz_A 231 NK-ITDLSP---LANLSQLTWLEIGTNQ-ISDIN---------AVKDLTKLKMLNVGSN-QISDISV---LNNLSQLNSL 292 (347)
T ss_dssp SC-CCCCGG---GTTCTTCCEEECCSSC-CCCCG---------GGTTCTTCCEEECCSS-CCCCCGG---GGGCTTCSEE
T ss_pred Cc-cCCCcc---hhcCCCCCEEECCCCc-cCCCh---------hHhcCCCcCEEEccCC-ccCCChh---hcCCCCCCEE
Confidence 74 555553 6788999999999874 43332 2233889999999997 6666642 3458999999
Q ss_pred eeccCCCCcccCCCCcCCCCceeeeccccC
Q 014145 365 VVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 365 ~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 394 (430)
++++|.-....+..+..+++|+++++.++.
T Consensus 293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp ECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred ECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 999986544444556678999999998765
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=8.2e-20 Score=188.54 Aligned_cols=134 Identities=10% Similarity=0.056 Sum_probs=69.9
Q ss_pred cccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccc
Q 014145 46 EMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLE 125 (430)
Q Consensus 46 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 125 (430)
.+..+++|++|+++++. +..+.... ...+++|++|+++++ .+....|.. +.++++|++|++++|. +..+
T Consensus 52 ~~~~l~~L~~L~Ls~n~-i~~~~~~~---~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n~-i~~l---- 120 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQ-IYWIHEDT---FQSQHRLDTLVLTAN-PLIFMAETA-LSGPKALKHLFFIQTG-ISSI---- 120 (606)
T ss_dssp TSTTCTTCSEEECTTCC-CCEECTTT---TTTCTTCCEEECTTC-CCSEECTTT-TSSCTTCCEEECTTSC-CSCG----
T ss_pred HhccCccceEEECCCCc-cceeChhh---ccCccccCeeeCCCC-cccccChhh-hcccccccEeeccccC-cccC----
Confidence 45566677777776665 44432211 145666777777665 344433332 5566677777776663 3333
Q ss_pred cccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc------CCCce--EEEecCCCC
Q 014145 126 ELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVV--HVTTDNKEP 197 (430)
Q Consensus 126 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~--~L~l~~~~~ 197 (430)
+...+..+++|++|+++++ .+..++... ...+++|++|++.++. ++..+ ..+++ .+++++|.+
T Consensus 121 -----~~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 121 -----DFIPLHNQKTLESLYLGSN-HISSIKLPK--GFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp -----GGSCCTTCTTCCEEECCSS-CCCCCCCCT--TCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred -----CcchhccCCcccEEECCCC-cccccCccc--ccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCcc
Confidence 1122356667777777664 333331111 2236667777766654 33332 33455 566666654
Q ss_pred Cc
Q 014145 198 EK 199 (430)
Q Consensus 198 ~~ 199 (430)
.+
T Consensus 192 ~~ 193 (606)
T 3t6q_A 192 AG 193 (606)
T ss_dssp CE
T ss_pred Cc
Confidence 43
No 6
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=4.8e-19 Score=177.04 Aligned_cols=291 Identities=13% Similarity=0.186 Sum_probs=162.6
Q ss_pred ccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccc
Q 014145 47 MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEE 126 (430)
Q Consensus 47 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 126 (430)
+..+++|++|+++++. +..+.. ...+++|++|++++| .+...++ +..+++|++|++++|. +..+.
T Consensus 86 ~~~l~~L~~L~l~~n~-l~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~---- 150 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQ-IADITP-----LANLTNLTGLTLFNN-QITDIDP---LKNLTNLNRLELSSNT-ISDIS---- 150 (466)
T ss_dssp GTTCTTCCEEECCSSC-CCCCGG-----GTTCTTCCEEECCSS-CCCCCGG---GTTCTTCSEEEEEEEE-ECCCG----
T ss_pred hhccccCCEEECCCCc-cccChh-----hcCCCCCCEEECCCC-CCCCChH---HcCCCCCCEEECCCCc-cCCCh----
Confidence 4445555555555544 333221 145566666666665 3443322 4456666666666652 32221
Q ss_pred ccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc----CCCceEEEecCCCCCcccC
Q 014145 127 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTS 202 (430)
Q Consensus 127 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~ 202 (430)
. +..+++|++|++.+ .+..++. +..+++|++|++.+|. ++.++ .++|+.|++++|.+.++.+
T Consensus 151 ------~-~~~l~~L~~L~l~~--~~~~~~~----~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~ 216 (466)
T 1o6v_A 151 ------A-LSGLTSLQQLSFGN--QVTDLKP----LANLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDITP 216 (466)
T ss_dssp ------G-GTTCTTCSEEEEEE--SCCCCGG----GTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG
T ss_pred ------h-hccCCcccEeecCC--cccCchh----hccCCCCCEEECcCCc-CCCChhhccCCCCCEEEecCCccccccc
Confidence 1 13334444444432 1111111 3455566666665554 33322 3455666665555443321
Q ss_pred ------CCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCC
Q 014145 203 ------EENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLEN 276 (430)
Q Consensus 203 ------~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~ 276 (430)
++.+.+.+..-..+.....+++|+.|+++++ .+..+.. + ..+++|+.|+++++. +..++. +..+++
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~--~---~~l~~L~~L~l~~n~-l~~~~~-~~~l~~ 288 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN-QISNLAP--L---SGLTKLTELKLGANQ-ISNISP-LAGLTA 288 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCCGG--G---TTCTTCSEEECCSSC-CCCCGG-GTTCTT
T ss_pred ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCC-ccccchh--h---hcCCCCCEEECCCCc-cCcccc-ccCCCc
Confidence 1111111110001123456788888888885 4444332 2 677888888888864 444443 667888
Q ss_pred CCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCccc
Q 014145 277 LATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYAL 356 (430)
Q Consensus 277 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~ 356 (430)
|+.|++++|. +..++. ++.+++|+.|++++|. +..+. ....+++|++|++.++ .++.++ ...
T Consensus 289 L~~L~L~~n~-l~~~~~---~~~l~~L~~L~L~~n~-l~~~~---------~~~~l~~L~~L~l~~n-~l~~~~---~l~ 350 (466)
T 1o6v_A 289 LTNLELNENQ-LEDISP---ISNLKNLTYLTLYFNN-ISDIS---------PVSSLTKLQRLFFYNN-KVSDVS---SLA 350 (466)
T ss_dssp CSEEECCSSC-CSCCGG---GGGCTTCSEEECCSSC-CSCCG---------GGGGCTTCCEEECCSS-CCCCCG---GGT
T ss_pred cCeEEcCCCc-ccCchh---hcCCCCCCEEECcCCc-CCCch---------hhccCccCCEeECCCC-ccCCch---hhc
Confidence 8888888864 555543 5678889999998874 33322 1223788999999887 566553 234
Q ss_pred CCCCccEEeeccCCCCcccCCCCcCCCCceeeeccccC
Q 014145 357 EFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 357 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 394 (430)
.+++|++|++++|......| ...+++|+++++.++.
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 58899999998885544444 5578899999987653
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=1.5e-19 Score=186.28 Aligned_cols=288 Identities=16% Similarity=0.188 Sum_probs=162.7
Q ss_pred chhhhhhhcc-cCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCC
Q 014145 38 STIQKCYEEM-IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD 116 (430)
Q Consensus 38 ~~~~~l~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 116 (430)
+.+..+|... ..+++|++|+++++. +..++... ...+++|++|++++|. +..+++. .++++++|++|++++|
T Consensus 61 ~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n- 133 (597)
T 3oja_B 61 STMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYA---FAYAHTIQKLYMGFNA-IRYLPPH-VFQNVPLLTVLVLERN- 133 (597)
T ss_dssp CEESEECTHHHHHCCCCSEEECTTSC-CCEECTTT---TTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSS-
T ss_pred CCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHH---hcCCCCCCEEECCCCc-CCCCCHH-HHcCCCCCCEEEeeCC-
Confidence 3455566553 468899999999877 77654322 1568899999999874 6664443 3678999999999998
Q ss_pred CccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc---CCCceEEEec
Q 014145 117 SLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTD 193 (430)
Q Consensus 117 ~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~l~ 193 (430)
.+..+ |.+++..+++|++|+++++. +..++.. .+..+++|++|++.+|. ++..+ .++|+.++++
T Consensus 134 ~l~~l---------~~~~~~~l~~L~~L~Ls~N~-l~~~~~~--~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~L~l~ 200 (597)
T 3oja_B 134 DLSSL---------PRGIFHNTPKLTTLSMSNNN-LERIEDD--TFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVS 200 (597)
T ss_dssp CCCCC---------CTTTTTTCTTCCEEECCSSC-CCBCCTT--TTTTCTTCCEEECTTSC-CSBCCGGGCTTCSEEECC
T ss_pred CCCCC---------CHHHhccCCCCCEEEeeCCc-CCCCChh--hhhcCCcCcEEECcCCC-CCCcChhhhhhhhhhhcc
Confidence 46555 56666888999999999864 4444321 26678899999998875 55544 5678888888
Q ss_pred CCCCCcccC---CCceeeecC-cccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccC
Q 014145 194 NKEPEKLTS---EENFFLTDQ-IQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT 269 (430)
Q Consensus 194 ~~~~~~~~~---~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 269 (430)
+|.+..+.. ++.+.+.+. ...+ .....++|+.|+++++ .++.. ..+ ..+++|+.|+++++......|.
T Consensus 201 ~n~l~~l~~~~~L~~L~ls~n~l~~~--~~~~~~~L~~L~L~~n-~l~~~--~~l---~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 201 YNLLSTLAIPIAVEELDASHNSINVV--RGPVNVELTILKLQHN-NLTDT--AWL---LNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp SSCCSEEECCTTCSEEECCSSCCCEE--ECSCCSCCCEEECCSS-CCCCC--GGG---GGCTTCSEEECCSSCCCEEESG
T ss_pred cCccccccCCchhheeeccCCccccc--ccccCCCCCEEECCCC-CCCCC--hhh---ccCCCCCEEECCCCccCCCCHH
Confidence 877655331 111111110 0000 0112345555555553 23321 111 4555666666655533333344
Q ss_pred CcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCcee
Q 014145 270 PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSF 349 (430)
Q Consensus 270 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 349 (430)
.+..+++|+.|++++| .+..++. ....+++|+.|++++|. +..++. ....+++|++|+++++ .++.+
T Consensus 273 ~~~~l~~L~~L~Ls~N-~l~~l~~--~~~~l~~L~~L~Ls~N~-l~~i~~--------~~~~l~~L~~L~L~~N-~l~~~ 339 (597)
T 3oja_B 273 PFVKMQRLERLYISNN-RLVALNL--YGQPIPTLKVLDLSHNH-LLHVER--------NQPQFDRLENLYLDHN-SIVTL 339 (597)
T ss_dssp GGTTCSSCCEEECTTS-CCCEEEC--SSSCCTTCCEEECCSSC-CCCCGG--------GHHHHTTCSEEECCSS-CCCCC
T ss_pred HhcCccCCCEEECCCC-CCCCCCc--ccccCCCCcEEECCCCC-CCccCc--------ccccCCCCCEEECCCC-CCCCc
Confidence 4555556666666554 2343332 23445556666665543 222210 1122555666666554 33443
Q ss_pred ccCCcccCCCCccEEeeccCC
Q 014145 350 CLGNYALEFPSLEHVVVRQCP 370 (430)
Q Consensus 350 ~~~~~~~~~~~L~~L~l~~c~ 370 (430)
+. ..+++|++|++.+++
T Consensus 340 ~~----~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 340 KL----STHHTLKNLTLSHND 356 (597)
T ss_dssp CC----CTTCCCSEEECCSSC
T ss_pred Ch----hhcCCCCEEEeeCCC
Confidence 32 125556666665543
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=1.2e-20 Score=195.77 Aligned_cols=321 Identities=13% Similarity=0.174 Sum_probs=181.4
Q ss_pred chhhhhhhcccCCCCcceeecccccCCee------------------eccCCCCCCC--CCCCcceEEEeCCCCCCccCc
Q 014145 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQE------------------IWHGQALPVS--FFNNLRHLVVDDCTNMLSAIP 97 (430)
Q Consensus 38 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~------------------~~~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~ 97 (430)
+.+..+|..+..+++|++|+++++. +.. ++... . .+++|++|++++|..... .|
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l----~~~~l~~L~~L~L~~n~l~~~-~p 266 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDL----KWDNLKDLTDVEVYNCPNLTK-LP 266 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCC----CGGGCTTCCEEEEECCTTCSS-CC
T ss_pred CCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhh----hhcccCCCCEEEecCCcCCcc-Ch
Confidence 3455577778888899999998877 665 33333 4 788899999988853333 44
Q ss_pred hhHHHhcCCCCEEEEecCCCccE--ecccccccCCccCcCCc------CCccceeecCCccccccccC--CccccccCCC
Q 014145 98 ANLIRCLNNLRWLEVRNCDSLEE--VLHLEELNADKEHIGPL------FPKLFELTLMDLPKLKRFCN--FTENIIEMPE 167 (430)
Q Consensus 98 ~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~l~~~------l~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~ 167 (430)
.. +.++++|++|++++|..+.. + |.++ .. +++|++|+++++ .+..+|. . +..+++
T Consensus 267 ~~-l~~l~~L~~L~Ls~n~~l~~~~l---------p~~~-~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~---l~~l~~ 331 (636)
T 4eco_A 267 TF-LKALPEMQLINVACNRGISGEQL---------KDDW-QALADAPVGEKIQIIYIGYN-NLKTFPVETS---LQKMKK 331 (636)
T ss_dssp TT-TTTCSSCCEEECTTCTTSCHHHH---------HHHH-HHHHHSGGGGTCCEEECCSS-CCSSCCCHHH---HTTCTT
T ss_pred HH-HhcCCCCCEEECcCCCCCccccc---------hHHH-HhhhccccCCCCCEEECCCC-cCCccCchhh---hccCCC
Confidence 33 67788888888888863432 3 2332 22 367777777765 3334543 2 556667
Q ss_pred ccEEEeccCCCcc-ccc----CCCceEEEecCCCCCcccC--------CCceeeec-CcccccccCCC--CCCCCEEecc
Q 014145 168 LRYLAIENCPDME-TFI----SNSVVHVTTDNKEPEKLTS--------EENFFLTD-QIQPLFDEKVA--FPQLRYLELS 231 (430)
Q Consensus 168 L~~L~l~~c~~l~-~~~----~~~L~~L~l~~~~~~~~~~--------~~~l~~~~-~~~~~~~~~~~--~~~L~~L~l~ 231 (430)
|++|++.+|. ++ .++ .++|+.|++++|.+..+.. ++.+.+.+ ....+-..... +++|+.|+++
T Consensus 332 L~~L~L~~N~-l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls 410 (636)
T 4eco_A 332 LGMLECLYNQ-LEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFS 410 (636)
T ss_dssp CCEEECCSCC-CEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECC
T ss_pred CCEEeCcCCc-CccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECc
Confidence 7777776654 33 333 2456666666665443321 11111111 01111111222 2367777777
Q ss_pred cCCCceeeccCCchhh----hhcccccEEEeecCCCcccccCCcc-cCCCCCEEEEccCCCcccccCchhh------ccc
Q 014145 232 RLHKVQHLWKENDESN----KAFANLIRLKISECSKLQKLVTPSW-HLENLATLEVSKCHGLINVLTLSTS------ESL 300 (430)
Q Consensus 232 ~~~~l~~~~~~~~~~~----~~l~~L~~L~l~~c~~l~~l~~~l~-~l~~L~~L~l~~c~~l~~l~~~~~~------~~l 300 (430)
++ .+....+..+... -.+++|+.|+++++ .+..+|.... .+++|+.|+++++. +..++...+. .++
T Consensus 411 ~N-~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l 487 (636)
T 4eco_A 411 YN-EIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNT 487 (636)
T ss_dssp SS-CTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTG
T ss_pred CC-cCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhcccccccccc
Confidence 64 3333222222000 04557777777775 3445655433 46777777777753 4455442111 112
Q ss_pred cccceEeeccccccchhhcccccccCCcce--eecccceEeccCCCCCceeccCCcccCCCCccEEeecc------CCCC
Q 014145 301 VNLGRMKIADCKMIEQIIQLQVGEEAKGCV--VFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ------CPTM 372 (430)
Q Consensus 301 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~------c~~l 372 (430)
++|++|+++++. +..++. ... .+++|++|++.++ .++.++. ....+++|++|++++ +...
T Consensus 488 ~~L~~L~Ls~N~-l~~lp~--------~~~~~~l~~L~~L~Ls~N-~l~~ip~--~~~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 488 YLLTSIDLRFNK-LTKLSD--------DFRATTLPYLVGIDLSYN-SFSKFPT--QPLNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp GGCCEEECCSSC-CCBCCG--------GGSTTTCTTCCEEECCSS-CCSSCCC--GGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred CCccEEECcCCc-CCccCh--------hhhhccCCCcCEEECCCC-CCCCcCh--hhhcCCCCCEEECCCCcccccCccc
Confidence 377777777764 333321 111 3677888888875 4555554 233478888888854 3334
Q ss_pred cccCCCCcCCCCceeeeccccCC
Q 014145 373 KIFSQGVVDAPKLNKVKPTEEED 395 (430)
Q Consensus 373 ~~~~~~~~~~~~L~~l~l~~~~~ 395 (430)
+.+|..+..+++|++|++.++.-
T Consensus 556 ~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 556 REWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CCCCTTGGGCSSCCEEECCSSCC
T ss_pred ccChHHHhcCCCCCEEECCCCcC
Confidence 56676677788888888876543
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=1.2e-19 Score=187.39 Aligned_cols=63 Identities=17% Similarity=0.278 Sum_probs=37.0
Q ss_pred ccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecC
Q 014145 47 MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 47 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 115 (430)
+..+++|++|+++++. +..+.... ...+++|++|++++|. +....|.. ++++++|++|++++|
T Consensus 52 ~~~l~~L~~L~Ls~n~-l~~i~~~~---~~~l~~L~~L~Ls~n~-l~~~~p~~-~~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCE-IETIEDKA---WHGLHHLSNLILTGNP-IQSFSPGS-FSGLTSLENLVAVET 114 (606)
T ss_dssp TTTCTTCCEEECTTCC-CCEECTTT---TTTCTTCCEEECTTCC-CCCCCTTS-STTCTTCCEEECTTS
T ss_pred ccCCccCcEEeCCCCc-ccccCHHH---hhchhhcCEeECCCCc-ccccChhh-cCCcccCCEEEccCC
Confidence 4466777777777665 55443221 1456677777777663 44443433 556777777777766
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=2.9e-18 Score=176.96 Aligned_cols=240 Identities=18% Similarity=0.126 Sum_probs=116.5
Q ss_pred CCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc------CCCceEEEecCCCCC-cc-----cC
Q 014145 135 GPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPE-KL-----TS 202 (430)
Q Consensus 135 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~-~~-----~~ 202 (430)
+..+++|++|+++++ .+..+|.. +..+++|++|++.+|. ++..+ .++|+.|++++|... .+ ..
T Consensus 274 ~~~l~~L~~L~l~~n-~l~~lp~~---l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 274 FHCFSGLQELDLTAT-HLSELPSG---LVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp TTTCTTCSEEECTTS-CCSCCCSS---CCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred hccccCCCEEeccCC-ccCCCChh---hcccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence 345566666666664 34445443 4556666666666654 33221 345666666666532 11 11
Q ss_pred CCceeeec----Ccccc---cccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccC-CcccC
Q 014145 203 EENFFLTD----QIQPL---FDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHL 274 (430)
Q Consensus 203 ~~~l~~~~----~~~~~---~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~l~~l 274 (430)
+++++.++ ..... ....+.+++|++|+++++ .+..+.+..+ ..+++|+.|+++++......+. .+..+
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~l 424 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAF---KECPQLELLDLAFTRLKVKDAQSPFQNL 424 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTTT---TTCTTCSEEECTTCCEECCTTCCTTTTC
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHHh---cCCccCCeEECCCCcCCCcccchhhhCc
Confidence 22222211 00000 112344556666666553 3444444444 4556666666665533222222 24455
Q ss_pred CCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCc
Q 014145 275 ENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNY 354 (430)
Q Consensus 275 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~ 354 (430)
++|+.|++++|. +...+.. .++.+++|++|++++|......+. .......+++|++|++++| .++.+... .
T Consensus 425 ~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~ 495 (606)
T 3t6q_A 425 HLLKVLNLSHSL-LDISSEQ-LFDGLPALQHLNLQGNHFPKGNIQ-----KTNSLQTLGRLEILVLSFC-DLSSIDQH-A 495 (606)
T ss_dssp TTCCEEECTTCC-CBTTCTT-TTTTCTTCCEEECTTCBCGGGEEC-----SSCGGGGCTTCCEEECTTS-CCCEECTT-T
T ss_pred ccCCEEECCCCc-cCCcCHH-HHhCCCCCCEEECCCCCCCccccc-----cchhhccCCCccEEECCCC-ccCccChh-h
Confidence 666666666653 2222211 244566666666666543211110 0011223666777777765 44544321 2
Q ss_pred ccCCCCccEEeeccCCCCcccCCCCcCCCCceeeecccc
Q 014145 355 ALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 393 (430)
Q Consensus 355 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~ 393 (430)
...+++|++|++++|.-....|..+..+++| .+++.++
T Consensus 496 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 2346677777777764444444455566666 6766554
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=1.5e-19 Score=191.72 Aligned_cols=241 Identities=15% Similarity=0.015 Sum_probs=114.9
Q ss_pred hhhcccC-CCCcceeecccccCCeee-ccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccE
Q 014145 43 CYEEMIG-FRDIKYLQLGHFPRLQEI-WHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEE 120 (430)
Q Consensus 43 l~~~~~~-l~~L~~L~l~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 120 (430)
+|..+.. +++|++|+++++. +... +... ..+++|+.|++++|. +....|...+..+++|++|++++|.....
T Consensus 285 ip~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~----~~l~~L~~L~L~~n~-l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~ 358 (768)
T 3rgz_A 285 IPDFLSGACDTLTGLDLSGNH-FYGAVPPFF----GSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGE 358 (768)
T ss_dssp CCCCSCTTCTTCSEEECCSSE-EEECCCGGG----GGCTTCCEEECCSSE-EEEECCHHHHTTCTTCCEEECCSSEEEEC
T ss_pred cCHHHHhhcCcCCEEECcCCc-CCCccchHH----hcCCCccEEECCCCc-ccCcCCHHHHhcCCCCCEEeCcCCccCcc
Confidence 3444433 2666666666665 3321 1111 445666666666653 33223433355566666666666532112
Q ss_pred ecc-ccc----c-----------cCCccCcC-CcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcc-cc
Q 014145 121 VLH-LEE----L-----------NADKEHIG-PLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDME-TF 182 (430)
Q Consensus 121 ~~~-~~~----~-----------~~~~~~l~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~ 182 (430)
+.. +.. + +..|..+. ..+++|++|+++++.....+|.. +..+++|++|++.+|. ++ ..
T Consensus 359 ~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~N~-l~~~~ 434 (768)
T 3rgz_A 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT---LSNCSELVSLHLSFNY-LSGTI 434 (768)
T ss_dssp CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG---GGGCTTCCEEECCSSE-EESCC
T ss_pred ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHH---HhcCCCCCEEECcCCc-ccCcc
Confidence 200 000 0 00011110 11345555555554333233322 4455555555555543 22 11
Q ss_pred c-----CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEE
Q 014145 183 I-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLK 257 (430)
Q Consensus 183 ~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~ 257 (430)
+ .++|+.|++++|.+.+.. ....+.+++|++|+++++ .+....+..+ ..+++|+.|+
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~--------------p~~~~~l~~L~~L~L~~N-~l~~~~p~~l---~~l~~L~~L~ 496 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEI--------------PQELMYVKTLETLILDFN-DLTGEIPSGL---SNCTNLNWIS 496 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCC--------------CGGGGGCTTCCEEECCSS-CCCSCCCGGG---GGCTTCCEEE
T ss_pred cHHHhcCCCCCEEECCCCcccCcC--------------CHHHcCCCCceEEEecCC-cccCcCCHHH---hcCCCCCEEE
Confidence 1 345555555555543221 122345566666666664 3332223333 5566666666
Q ss_pred eecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccc
Q 014145 258 ISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKM 313 (430)
Q Consensus 258 l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~ 313 (430)
++++.....+|.++..+++|+.|++++|.-...+|. .++.+++|++|++++|+.
T Consensus 497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG--GGGGCTTCCEEECCSSEE
T ss_pred ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH--HHcCCCCCCEEECCCCcc
Confidence 666654445666666666666666666644334433 245566666666666543
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=1.6e-19 Score=191.31 Aligned_cols=319 Identities=11% Similarity=-0.000 Sum_probs=187.4
Q ss_pred cCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccc--
Q 014145 48 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLE-- 125 (430)
Q Consensus 48 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-- 125 (430)
..+++|++|+++++. +....... ..+++|++|++++|. +....|.. +..+++|++|++++|.. ....+..
T Consensus 197 ~~l~~L~~L~Ls~n~-l~~~~~~l----~~l~~L~~L~Ls~n~-l~~~~~~~-l~~l~~L~~L~Ls~n~l-~~~~~~~~l 268 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNN-FSTGIPFL----GDCSALQHLDISGNK-LSGDFSRA-ISTCTELKLLNISSNQF-VGPIPPLPL 268 (768)
T ss_dssp TTCTTCCEEECCSSC-CCSCCCBC----TTCCSCCEEECCSSC-CCSCHHHH-TTTCSSCCEEECCSSCC-EESCCCCCC
T ss_pred ccCCcCCEEECcCCc-CCCCCccc----ccCCCCCEEECcCCc-CCCcccHH-HhcCCCCCEEECCCCcc-cCccCcccc
Confidence 456777777777665 33211112 456777777777763 33323332 56677777777776632 2111100
Q ss_pred -----------cc-cCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc------CCCc
Q 014145 126 -----------EL-NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSV 187 (430)
Q Consensus 126 -----------~~-~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L 187 (430)
.+ +..|..+...+++|++|+++++.....+|.. +..+++|++|++.+|.....++ .++|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L 345 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF---FGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG---GGGCTTCCEEECCSSEEEEECCHHHHTTCTTC
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH---HhcCCCccEEECCCCcccCcCCHHHHhcCCCC
Confidence 00 0223444333467777777765443334333 5667777777777665221222 4567
Q ss_pred eEEEecCCCCCcc-c--------CCCceeeecC--cccccccCCC--CCCCCEEecccCCCceeeccCCchhhhhccccc
Q 014145 188 VHVTTDNKEPEKL-T--------SEENFFLTDQ--IQPLFDEKVA--FPQLRYLELSRLHKVQHLWKENDESNKAFANLI 254 (430)
Q Consensus 188 ~~L~l~~~~~~~~-~--------~~~~l~~~~~--~~~~~~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~ 254 (430)
+.|++++|.+.+. . +++.+.+.+. ...+...... +++|++|+++++ .+....+..+ ..+++|+
T Consensus 346 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~p~~l---~~l~~L~ 421 (768)
T 3rgz_A 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN-GFTGKIPPTL---SNCSELV 421 (768)
T ss_dssp CEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS-EEEEECCGGG---GGCTTCC
T ss_pred CEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC-ccccccCHHH---hcCCCCC
Confidence 7777777764321 1 1222222110 0111122222 567888888875 4444434444 6778888
Q ss_pred EEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecc
Q 014145 255 RLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEE 334 (430)
Q Consensus 255 ~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 334 (430)
.|+++++.....+|..+..+++|+.|++++|.-...++. .+..+++|++|++++|.....++ .....+++
T Consensus 422 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p--------~~l~~l~~ 491 (768)
T 3rgz_A 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDLTGEIP--------SGLSNCTN 491 (768)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSCCC--------GGGGGCTT
T ss_pred EEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH--HHcCCCCceEEEecCCcccCcCC--------HHHhcCCC
Confidence 888888755556677777888888888888764444443 35677888888888875432322 12233788
Q ss_pred cceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeeecccc
Q 014145 335 LGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 393 (430)
Q Consensus 335 L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~ 393 (430)
|++|++.++.--..++.. ...+++|++|++++|.....+|..+..+++|+.+++.++
T Consensus 492 L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 492 LNWISLSNNRLTGEIPKW--IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred CCEEEccCCccCCcCChH--HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 888888887544455542 234788899999888666677877778888888888664
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=8.1e-20 Score=189.53 Aligned_cols=311 Identities=11% Similarity=0.069 Sum_probs=209.8
Q ss_pred hhhccc--CCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCc-cCchhHHHhc------CCCCEEEEe
Q 014145 43 CYEEMI--GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLS-AIPANLIRCL------NNLRWLEVR 113 (430)
Q Consensus 43 l~~~~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~~~l------~~L~~L~l~ 113 (430)
+|..+. .+++|++|+++++.-...++... ..+++|++|++++|..+.. ..|.. +..+ ++|++|+++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~ 313 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL----KALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIG 313 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTT----TTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHH----hcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECC
Confidence 888888 89999999999887333433333 6789999999999853554 34444 4444 899999999
Q ss_pred cCCCccEecccccccCCcc--CcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc-----CCC
Q 014145 114 NCDSLEEVLHLEELNADKE--HIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNS 186 (430)
Q Consensus 114 ~~~~l~~~~~~~~~~~~~~--~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~ 186 (430)
+|. +..+ |. .+ ..+++|++|+++++.....+| . +..+++|++|.+.++. ++.++ ..+
T Consensus 314 ~n~-l~~i---------p~~~~l-~~l~~L~~L~L~~N~l~g~ip-~---~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~ 377 (636)
T 4eco_A 314 YNN-LKTF---------PVETSL-QKMKKLGMLECLYNQLEGKLP-A---FGSEIKLASLNLAYNQ-ITEIPANFCGFTE 377 (636)
T ss_dssp SSC-CSSC---------CCHHHH-TTCTTCCEEECCSCCCEEECC-C---CEEEEEESEEECCSSE-EEECCTTSEEECT
T ss_pred CCc-CCcc---------Cchhhh-ccCCCCCEEeCcCCcCccchh-h---hCCCCCCCEEECCCCc-cccccHhhhhhcc
Confidence 884 4454 44 33 777888888888764433665 2 6677788888887764 44444 345
Q ss_pred -ceEEEecCCCCCcccC------CCceeeecC----ccccc-ccCC-------CCCCCCEEecccCCCceeeccCCchhh
Q 014145 187 -VVHVTTDNKEPEKLTS------EENFFLTDQ----IQPLF-DEKV-------AFPQLRYLELSRLHKVQHLWKENDESN 247 (430)
Q Consensus 187 -L~~L~l~~~~~~~~~~------~~~l~~~~~----~~~~~-~~~~-------~~~~L~~L~l~~~~~l~~~~~~~~~~~ 247 (430)
|+.|++++|.+..+.. ++++..++- ..... ..+. .+++|++|+++++ .++.++...+
T Consensus 378 ~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--- 453 (636)
T 4eco_A 378 QVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELF--- 453 (636)
T ss_dssp TCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHH---
T ss_pred cCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHH---
Confidence 7888888777654432 113333221 11100 1122 5679999999996 5666544433
Q ss_pred hhcccccEEEeecCCCcccccCCccc--------CCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhc
Q 014145 248 KAFANLIRLKISECSKLQKLVTPSWH--------LENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQ 319 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l~~l~~~l~~--------l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 319 (430)
..+++|+.|+++++. +..+|..... +++|+.|++++|. +..++.......+++|++|+++++. +..++
T Consensus 454 ~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip- 529 (636)
T 4eco_A 454 STGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNS-FSKFP- 529 (636)
T ss_dssp HTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSC-CSSCC-
T ss_pred ccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCC-CCCcC-
Confidence 568999999999974 5577765432 2299999999974 6677653111389999999999875 33333
Q ss_pred ccccccCCcceeecccceEeccCCC------CCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeeecccc
Q 014145 320 LQVGEEAKGCVVFEELGYLGLDCLP------SLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 393 (430)
Q Consensus 320 ~~~~~~~~~~~~~~~L~~L~l~~c~------~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~ 393 (430)
.....+++|++|+++++. -...++. ....+++|++|++++|.- +.+|.... ++|+.|++.++
T Consensus 530 -------~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N 597 (636)
T 4eco_A 530 -------TQPLNSSTLKGFGIRNQRDAQGNRTLREWPE--GITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDN 597 (636)
T ss_dssp -------CGGGGCSSCCEEECCSCBCTTCCBCCCCCCT--TGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSC
T ss_pred -------hhhhcCCCCCEEECCCCcccccCcccccChH--HHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCC
Confidence 123348999999996543 2344544 234589999999999855 88887753 89999999776
Q ss_pred C
Q 014145 394 E 394 (430)
Q Consensus 394 ~ 394 (430)
+
T Consensus 598 ~ 598 (636)
T 4eco_A 598 P 598 (636)
T ss_dssp T
T ss_pred C
Confidence 4
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=1.3e-18 Score=173.10 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=96.6
Q ss_pred cccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcc
Q 014145 250 FANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGC 329 (430)
Q Consensus 250 l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 329 (430)
.++|+.|+++++......+..+..+++|++|++++|. +..++.. .+..+++|++|++++|. +..+.. ...
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~-------~~~ 343 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDN-AFWGLTHLLKLNLSQNF-LGSIDS-------RMF 343 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSC-CCEECG-------GGG
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChh-HhcCcccCCEEECCCCc-cCCcCh-------hHh
Confidence 3689999999876655666778889999999999975 5555432 35778999999999874 333321 112
Q ss_pred eeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCC-CcCCCCceeeeccccC
Q 014145 330 VVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEEE 394 (430)
Q Consensus 330 ~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~l~l~~~~ 394 (430)
..+++|++|+++++ .++.+... ....+++|++|+++++ .++.++.. +..+++|++|++.+++
T Consensus 344 ~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 344 ENLDKLEVLDLSYN-HIRALGDQ-SFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCcccCCEEECCCC-cccccChh-hccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 23889999999997 56666432 2345899999999996 56666654 4688999999996654
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=2.3e-19 Score=190.47 Aligned_cols=233 Identities=12% Similarity=0.039 Sum_probs=141.3
Q ss_pred CcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc-----CCC-ceEEEecCCCCCcccC------C
Q 014145 136 PLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNS-VVHVTTDNKEPEKLTS------E 203 (430)
Q Consensus 136 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~-L~~L~l~~~~~~~~~~------~ 203 (430)
..+++|+.|+++++. +..+| . +..+++|++|.+.+|. ++.++ .++ |+.|++++|.+..+.. .
T Consensus 570 ~~L~~L~~L~Ls~N~-l~~lp-~---~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~ 643 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNK-VRHLE-A---FGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSV 643 (876)
T ss_dssp TTCTTCCEEECTTSC-CCBCC-C---CCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCS
T ss_pred hcCCCCCEEECCCCC-cccch-h---hcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCCCCcCchhhhcccc
Confidence 667777777777753 33555 2 6677777777777765 44444 234 7777777777554431 1
Q ss_pred Cceeeec----Cc----ccccccCC--CCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCccc
Q 014145 204 ENFFLTD----QI----QPLFDEKV--AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWH 273 (430)
Q Consensus 204 ~~l~~~~----~~----~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~ 273 (430)
..+..++ .. ..+....+ ..++|+.|+++++ .+..++...+ ..+++|+.|+++++ .+..+|.....
T Consensus 644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~---~~l~~L~~L~Ls~N-~L~~ip~~~~~ 718 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELF---ATGSPISTIILSNN-LMTSIPENSLK 718 (876)
T ss_dssp SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHH---HTTCCCSEEECCSC-CCSCCCTTSSS
T ss_pred CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHH---ccCCCCCEEECCCC-cCCccChHHhc
Confidence 1133221 01 11111122 2347888888875 4555443322 46788888888886 45566654433
Q ss_pred --------CCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCC-
Q 014145 274 --------LENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLP- 344 (430)
Q Consensus 274 --------l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~- 344 (430)
+++|+.|++++| .+..++.......+++|+.|+++++. +..++ .....+++|+.|++++++
T Consensus 719 ~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp--------~~l~~L~~L~~L~Ls~N~~ 788 (876)
T 4ecn_A 719 PKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNC-FSSFP--------TQPLNSSQLKAFGIRHQRD 788 (876)
T ss_dssp CTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSC-CSSCC--------CGGGGCTTCCEEECCCCBC
T ss_pred cccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCC-CCccc--------hhhhcCCCCCEEECCCCCC
Confidence 238888998887 46666542111378889999988864 33332 122347888899887643
Q ss_pred -----CCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeeeccccC
Q 014145 345 -----SLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 345 -----~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 394 (430)
-...++. ....+++|++|++++|.- +.+|.... ++|+.|++.+++
T Consensus 789 ls~N~l~~~ip~--~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 789 AEGNRILRQWPT--GITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp TTCCBCCCCCCT--TGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred cccccccccChH--HHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence 2334443 233588899999988754 78887653 689999997664
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=5.6e-20 Score=195.15 Aligned_cols=322 Identities=14% Similarity=0.137 Sum_probs=198.4
Q ss_pred chhhhhhhcccCCCCcceeecccccCCee------------------eccCCCCCCC--CCCCcceEEEeCCCCCCccCc
Q 014145 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQE------------------IWHGQALPVS--FFNNLRHLVVDDCTNMLSAIP 97 (430)
Q Consensus 38 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~------------------~~~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~ 97 (430)
+.+..+|..+..+++|++|+++++. +.. ++... + .+++|++|++++|..... .|
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l----~f~~L~~L~~L~Ls~N~l~~~-iP 508 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEEL----SWSNLKDLTDVELYNCPNMTQ-LP 508 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCC----CGGGCTTCCEEEEESCTTCCS-CC
T ss_pred CcccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhh----hhccCCCCCEEECcCCCCCcc-Ch
Confidence 3445588888999999999999887 665 33333 4 789999999999854444 45
Q ss_pred hhHHHhcCCCCEEEEecCCCccE--ecccccccCCccCc------CCcCCccceeecCCccccccccC--CccccccCCC
Q 014145 98 ANLIRCLNNLRWLEVRNCDSLEE--VLHLEELNADKEHI------GPLFPKLFELTLMDLPKLKRFCN--FTENIIEMPE 167 (430)
Q Consensus 98 ~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~l------~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~ 167 (430)
.. +.++++|++|++++|..+.. + |.++ ...+++|++|+++++. +..+|. . +..+++
T Consensus 509 ~~-l~~L~~L~~L~Ls~N~~lsg~~i---------P~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~---l~~L~~ 574 (876)
T 4ecn_A 509 DF-LYDLPELQSLNIACNRGISAAQL---------KADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASAS---LQKMVK 574 (876)
T ss_dssp GG-GGGCSSCCEEECTTCTTSCHHHH---------HHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHH---HTTCTT
T ss_pred HH-HhCCCCCCEEECcCCCCcccccc---------hHHHHhhhhcccccCCccEEEeeCCc-CCccCChhh---hhcCCC
Confidence 33 78899999999999963443 3 2222 2456799999999974 446765 3 778999
Q ss_pred ccEEEeccCCCccccc----CCCceEEEecCCCCCcccC--------CCceeeec-CcccccccCCCC--CCCCEEeccc
Q 014145 168 LRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTS--------EENFFLTD-QIQPLFDEKVAF--PQLRYLELSR 232 (430)
Q Consensus 168 L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~--------~~~l~~~~-~~~~~~~~~~~~--~~L~~L~l~~ 232 (430)
|++|++.+|. ++.++ .++|+.|++++|.+..+.. ++.|.+.+ ....+-...... ++|+.|++++
T Consensus 575 L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~ 653 (876)
T 4ecn_A 575 LGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY 653 (876)
T ss_dssp CCEEECTTSC-CCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCS
T ss_pred CCEEECCCCC-cccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcC
Confidence 9999999986 55554 5689999999998765441 22222211 111111111222 2366666665
Q ss_pred CCCceeeccCCchhhh--hcccccEEEeecCCCcccccCCcc-cCCCCCEEEEccCCCcccccCchh------hcccccc
Q 014145 233 LHKVQHLWKENDESNK--AFANLIRLKISECSKLQKLVTPSW-HLENLATLEVSKCHGLINVLTLST------SESLVNL 303 (430)
Q Consensus 233 ~~~l~~~~~~~~~~~~--~l~~L~~L~l~~c~~l~~l~~~l~-~l~~L~~L~l~~c~~l~~l~~~~~------~~~l~~L 303 (430)
+ .+....+....... .+++|+.|+++++. +..+|..+. .+++|+.|++++| .+..++...+ .+++++|
T Consensus 654 N-~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L 730 (876)
T 4ecn_A 654 N-KIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLL 730 (876)
T ss_dssp S-CTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGC
T ss_pred C-cCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCc
Confidence 4 22221111000001 23467777777653 445554443 5677777777775 3445543211 1123477
Q ss_pred ceEeeccccccchhhcccccccCCcce--eecccceEeccCCCCCceeccCCcccCCCCccEEeecc------CCCCccc
Q 014145 304 GRMKIADCKMIEQIIQLQVGEEAKGCV--VFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ------CPTMKIF 375 (430)
Q Consensus 304 ~~L~l~~c~~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~------c~~l~~~ 375 (430)
+.|++++|. +..++. ... .+++|+.|+++++ .++.++. ....+++|+.|++++ |.....+
T Consensus 731 ~~L~Ls~N~-L~~lp~--------~l~~~~l~~L~~L~Ls~N-~L~~lp~--~l~~L~~L~~L~Ls~N~~ls~N~l~~~i 798 (876)
T 4ecn_A 731 TTIDLRFNK-LTSLSD--------DFRATTLPYLSNMDVSYN-CFSSFPT--QPLNSSQLKAFGIRHQRDAEGNRILRQW 798 (876)
T ss_dssp CEEECCSSC-CCCCCG--------GGSTTTCTTCCEEECCSS-CCSSCCC--GGGGCTTCCEEECCCCBCTTCCBCCCCC
T ss_pred cEEECCCCC-CccchH--------HhhhccCCCcCEEEeCCC-CCCccch--hhhcCCCCCEEECCCCCCcccccccccC
Confidence 777777763 333321 111 3677888888775 5555554 233578888888865 3334566
Q ss_pred CCCCcCCCCceeeeccccCC
Q 014145 376 SQGVVDAPKLNKVKPTEEED 395 (430)
Q Consensus 376 ~~~~~~~~~L~~l~l~~~~~ 395 (430)
|..+..+++|++|++.++..
T Consensus 799 p~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 799 PTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CTTGGGCSSCCEEECCSSCC
T ss_pred hHHHhcCCCCCEEECCCCCC
Confidence 76677788888888876653
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=8.4e-19 Score=171.14 Aligned_cols=269 Identities=15% Similarity=0.166 Sum_probs=201.7
Q ss_pred hhhhhhh-cccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCC
Q 014145 39 TIQKCYE-EMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 39 ~~~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 117 (430)
.+..++. .+..+++|++|+++++. +..+.... ...+++|++|+++++ .+..+ |...+..+++|++|++++|.
T Consensus 80 ~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l~~l-~~~~~~~l~~L~~L~L~~n~- 152 (390)
T 3o6n_A 80 QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV---FQNVPLLTVLVLERN-DLSSL-PRGIFHNTPKLTTLSMSNNN- 152 (390)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-
T ss_pred cccccChhhccCCCCcCEEECCCCC-CCcCCHHH---hcCCCCCCEEECCCC-ccCcC-CHHHhcCCCCCcEEECCCCc-
Confidence 3444443 46678999999999887 66543221 257899999999998 46654 44446789999999999984
Q ss_pred ccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc-CCCceEEEecCCC
Q 014145 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-SNSVVHVTTDNKE 196 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~L~~L~l~~~~ 196 (430)
+..+ +...+..+++|++|+++++ .+..++ ...+++|++|++.++. ++.++ +.+++.|++++|.
T Consensus 153 l~~~---------~~~~~~~l~~L~~L~l~~n-~l~~~~-----~~~l~~L~~L~l~~n~-l~~~~~~~~L~~L~l~~n~ 216 (390)
T 3o6n_A 153 LERI---------EDDTFQATTSLQNLQLSSN-RLTHVD-----LSLIPSLFHANVSYNL-LSTLAIPIAVEELDASHNS 216 (390)
T ss_dssp CCBC---------CTTTTSSCTTCCEEECCSS-CCSBCC-----GGGCTTCSEEECCSSC-CSEEECCSSCSEEECCSSC
T ss_pred cCcc---------ChhhccCCCCCCEEECCCC-cCCccc-----cccccccceeeccccc-ccccCCCCcceEEECCCCe
Confidence 5554 3444588999999999986 444442 5678999999999875 66555 7799999999999
Q ss_pred CCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCC
Q 014145 197 PEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLEN 276 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~ 276 (430)
+..+. ...+++|+.|+++++ .++.. ..+ ..+++|++|+++++......|..+..+++
T Consensus 217 l~~~~-----------------~~~~~~L~~L~l~~n-~l~~~--~~l---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (390)
T 3o6n_A 217 INVVR-----------------GPVNVELTILKLQHN-NLTDT--AWL---LNYPGLVEVDLSYNELEKIMYHPFVKMQR 273 (390)
T ss_dssp CCEEE-----------------CCCCSSCCEEECCSS-CCCCC--GGG---GGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred eeecc-----------------ccccccccEEECCCC-CCccc--HHH---cCCCCccEEECCCCcCCCcChhHcccccc
Confidence 87754 244679999999996 55553 223 78899999999998554455667788999
Q ss_pred CCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCccc
Q 014145 277 LATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYAL 356 (430)
Q Consensus 277 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~ 356 (430)
|++|+++++ .+..++. ....+++|++|++++|. +..++. ....+++|++|++.++ .++.++. .
T Consensus 274 L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~n~-l~~~~~--------~~~~l~~L~~L~L~~N-~i~~~~~----~ 336 (390)
T 3o6n_A 274 LERLYISNN-RLVALNL--YGQPIPTLKVLDLSHNH-LLHVER--------NQPQFDRLENLYLDHN-SIVTLKL----S 336 (390)
T ss_dssp CCEEECCSS-CCCEEEC--SSSCCTTCCEEECCSSC-CCCCGG--------GHHHHTTCSEEECCSS-CCCCCCC----C
T ss_pred CCEEECCCC-cCcccCc--ccCCCCCCCEEECCCCc-ceecCc--------cccccCcCCEEECCCC-ccceeCc----h
Confidence 999999996 4666654 34678999999999984 444431 2234899999999997 4676654 2
Q ss_pred CCCCccEEeeccCC
Q 014145 357 EFPSLEHVVVRQCP 370 (430)
Q Consensus 357 ~~~~L~~L~l~~c~ 370 (430)
.+++|++|++.+++
T Consensus 337 ~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 337 THHTLKNLTLSHND 350 (390)
T ss_dssp TTCCCSEEECCSSC
T ss_pred hhccCCEEEcCCCC
Confidence 38999999999875
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=2e-18 Score=178.06 Aligned_cols=159 Identities=16% Similarity=0.104 Sum_probs=89.6
Q ss_pred CCCCCCCCEEecccCCCceeecc-CCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCccc-ccCchh
Q 014145 219 KVAFPQLRYLELSRLHKVQHLWK-ENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLIN-VLTLST 296 (430)
Q Consensus 219 ~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~-l~~~~~ 296 (430)
...+++|+.|+++++ .+....+ ..+ ..+++|+.|++++|......|..+..+++|++|++++|.-... ++. .
T Consensus 395 ~~~l~~L~~L~l~~n-~l~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~ 468 (606)
T 3vq2_A 395 FMGLEELQHLDFQHS-TLKRVTEFSAF---LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN--V 468 (606)
T ss_dssp CTTCTTCCEEECTTS-EEESTTTTTTT---TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS--C
T ss_pred ccCCCCCCeeECCCC-ccCCccChhhh---hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH--h
Confidence 344555555555553 2333222 222 4556666666666554444455555666666666666532221 221 2
Q ss_pred hccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccC
Q 014145 297 SESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFS 376 (430)
Q Consensus 297 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 376 (430)
++.+++|++|++++|.. ..+.. .....+++|++|+++++ .++.+... ....+++|++|++++|. ++.+|
T Consensus 469 ~~~l~~L~~L~Ls~n~l-~~~~~-------~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~l~~N~-l~~~p 537 (606)
T 3vq2_A 469 FANTTNLTFLDLSKCQL-EQISW-------GVFDTLHRLQLLNMSHN-NLLFLDSS-HYNQLYSLSTLDCSFNR-IETSK 537 (606)
T ss_dssp CTTCTTCCEEECTTSCC-CEECT-------TTTTTCTTCCEEECCSS-CCSCEEGG-GTTTCTTCCEEECTTSC-CCCEE
T ss_pred hccCCCCCEEECCCCcC-CccCh-------hhhcccccCCEEECCCC-cCCCcCHH-HccCCCcCCEEECCCCc-CcccC
Confidence 45566777777766632 22210 11223677888888877 44444221 23457888888888874 66777
Q ss_pred CCCcCCC-CceeeeccccC
Q 014145 377 QGVVDAP-KLNKVKPTEEE 394 (430)
Q Consensus 377 ~~~~~~~-~L~~l~l~~~~ 394 (430)
.....++ +|+++++.+++
T Consensus 538 ~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 538 GILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp SCGGGSCTTCCEEECCSCC
T ss_pred HhHhhhcccCcEEEccCCC
Confidence 7766666 58888887654
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=1e-18 Score=178.15 Aligned_cols=159 Identities=15% Similarity=0.146 Sum_probs=87.7
Q ss_pred CCCCCEEecccCCCceeecc---CCchhhhhcccccEEEeecCCCccccc---CCcccCCCCCEEEEccCCCcccccCch
Q 014145 222 FPQLRYLELSRLHKVQHLWK---ENDESNKAFANLIRLKISECSKLQKLV---TPSWHLENLATLEVSKCHGLINVLTLS 295 (430)
Q Consensus 222 ~~~L~~L~l~~~~~l~~~~~---~~~~~~~~l~~L~~L~l~~c~~l~~l~---~~l~~l~~L~~L~l~~c~~l~~l~~~~ 295 (430)
+++|+.|+++++. +....+ ..+ ..+++|+.|+++++. ++.++ ..+..+++|++|++++| .++.+|.
T Consensus 333 l~~L~~L~Ls~N~-l~~~~~~~~~~~---~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~-- 404 (549)
T 2z81_A 333 LKSLEFLDLSENL-MVEEYLKNSACK---GAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRN-TFHPMPD-- 404 (549)
T ss_dssp CTTCCEEECCSSC-CCHHHHHHHTCT---TSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCS--
T ss_pred CccccEEEccCCc-cccccccchhhh---hccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCC-CCccCCh--
Confidence 5666777776642 322111 111 455666777766653 33332 12445666666666665 3444443
Q ss_pred hhccccccceEeeccccccchhhcccc----------cccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEe
Q 014145 296 TSESLVNLGRMKIADCKMIEQIIQLQV----------GEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVV 365 (430)
Q Consensus 296 ~~~~l~~L~~L~l~~c~~l~~~~~~~~----------~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~ 365 (430)
.++.+++|++|++++|. +..+..... .........+++|++|+++++ .++.++.. ..+++|++|+
T Consensus 405 ~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~---~~l~~L~~L~ 479 (549)
T 2z81_A 405 SCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDA---SLFPVLLVMK 479 (549)
T ss_dssp CCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCG---GGCTTCCEEE
T ss_pred hhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCc---ccCccCCEEe
Confidence 23445566666665543 222110000 000000113678888888876 66666642 2478999999
Q ss_pred eccCCCCcccCC-CCcCCCCceeeeccccC
Q 014145 366 VRQCPTMKIFSQ-GVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 366 l~~c~~l~~~~~-~~~~~~~L~~l~l~~~~ 394 (430)
+++| .++.++. .+..+++|+.+++.+++
T Consensus 480 Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 480 ISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred cCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 9887 5555554 36678999999997765
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=2.9e-18 Score=173.71 Aligned_cols=156 Identities=13% Similarity=0.115 Sum_probs=116.3
Q ss_pred CCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcc--cccCCcccCCCCCEEEEccCCCcccccCchhh
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQ--KLVTPSWHLENLATLEVSKCHGLINVLTLSTS 297 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~ 297 (430)
..+++|++|+++++ .+....+..+ ..+++|+.|+++++.... .+|..+..+++|++|++++|.-...++.. .+
T Consensus 321 ~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~-~~ 395 (520)
T 2z7x_B 321 SKISPFLHLDFSNN-LLTDTVFENC---GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG-DC 395 (520)
T ss_dssp SSCCCCCEEECCSS-CCCTTTTTTC---CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC-SC
T ss_pred hhCCcccEEEeECC-ccChhhhhhh---ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc-hh
Confidence 57889999999996 5555334444 788999999999975433 45556778999999999997533325532 24
Q ss_pred ccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCC
Q 014145 298 ESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ 377 (430)
Q Consensus 298 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 377 (430)
..+++|++|++++|.....++.. ..++|++|+++++ .++.++.. ...+++|++|++++| .++.+|.
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~~~~~----------l~~~L~~L~Ls~N-~l~~ip~~--~~~l~~L~~L~L~~N-~l~~l~~ 461 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDTIFRC----------LPPRIKVLDLHSN-KIKSIPKQ--VVKLEALQELNVASN-QLKSVPD 461 (520)
T ss_dssp CCCTTCCEEECCSSCCCGGGGGS----------CCTTCCEEECCSS-CCCCCCGG--GGGCTTCCEEECCSS-CCCCCCT
T ss_pred ccCccCCEEECcCCCCCcchhhh----------hcccCCEEECCCC-cccccchh--hhcCCCCCEEECCCC-cCCccCH
Confidence 66789999999998643333311 1279999999997 77777763 336899999999997 6778887
Q ss_pred C-CcCCCCceeeeccccC
Q 014145 378 G-VVDAPKLNKVKPTEEE 394 (430)
Q Consensus 378 ~-~~~~~~L~~l~l~~~~ 394 (430)
. +..+++|+++++.+++
T Consensus 462 ~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 462 GIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred HHhccCCcccEEECcCCC
Confidence 6 6788999999996654
No 21
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=1.2e-18 Score=166.00 Aligned_cols=219 Identities=18% Similarity=0.229 Sum_probs=127.0
Q ss_pred CCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccccc
Q 014145 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 128 (430)
.+++++.|+++++. ++.++... ..+++|++|+++++. +..+ |.. +..+++|++|++++|. +..+
T Consensus 79 ~~~~l~~L~L~~n~-l~~lp~~l----~~l~~L~~L~L~~n~-l~~l-p~~-~~~l~~L~~L~Ls~n~-l~~l------- 142 (328)
T 4fcg_A 79 TQPGRVALELRSVP-LPQFPDQA----FRLSHLQHMTIDAAG-LMEL-PDT-MQQFAGLETLTLARNP-LRAL------- 142 (328)
T ss_dssp TSTTCCEEEEESSC-CSSCCSCG----GGGTTCSEEEEESSC-CCCC-CSC-GGGGTTCSEEEEESCC-CCCC-------
T ss_pred cccceeEEEccCCC-chhcChhh----hhCCCCCEEECCCCC-ccch-hHH-HhccCCCCEEECCCCc-cccC-------
Confidence 45789999999876 66655444 568899999999874 5543 433 6789999999999984 5555
Q ss_pred CCccCcCCcCCccceeecCCccccccccCCccc------cccCCCccEEEeccCCCccccc-----CCCceEEEecCCCC
Q 014145 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTEN------IIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEP 197 (430)
Q Consensus 129 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~------~~~~~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~ 197 (430)
|..+ ..+++|++|++++|..+..+|..... +..+++|++|++.+|. ++.++ .++|+.|++++|.+
T Consensus 143 --p~~l-~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 143 --PASI-ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp --CGGG-GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCC
T ss_pred --cHHH-hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCC
Confidence 5554 78899999999998877777654210 2247788888887764 44333 23445555555444
Q ss_pred CcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCC
Q 014145 198 EKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENL 277 (430)
Q Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L 277 (430)
.++. ...+.+++|++|++++|.....+ +..+ ..+++|+.|++++|+....+|..+..+++|
T Consensus 219 ~~l~---------------~~l~~l~~L~~L~Ls~n~~~~~~-p~~~---~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 279 (328)
T 4fcg_A 219 SALG---------------PAIHHLPKLEELDLRGCTALRNY-PPIF---GGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279 (328)
T ss_dssp CCCC---------------GGGGGCTTCCEEECTTCTTCCBC-CCCT---TCCCCCCEEECTTCTTCCBCCTTGGGCTTC
T ss_pred CcCc---------------hhhccCCCCCEEECcCCcchhhh-HHHh---cCCCCCCEEECCCCCchhhcchhhhcCCCC
Confidence 4332 12234444555555544333322 2222 344445555555444444444444444455
Q ss_pred CEEEEccCCCcccccCchhhccccccceEee
Q 014145 278 ATLEVSKCHGLINVLTLSTSESLVNLGRMKI 308 (430)
Q Consensus 278 ~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l 308 (430)
+.|++++|+.+..+|. .++.+++|+.+++
T Consensus 280 ~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l 308 (328)
T 4fcg_A 280 EKLDLRGCVNLSRLPS--LIAQLPANCIILV 308 (328)
T ss_dssp CEEECTTCTTCCCCCG--GGGGSCTTCEEEC
T ss_pred CEEeCCCCCchhhccH--HHhhccCceEEeC
Confidence 5555554444444443 2344444444444
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=2.2e-18 Score=177.59 Aligned_cols=264 Identities=17% Similarity=0.145 Sum_probs=191.7
Q ss_pred hhhhhhh-cccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCC
Q 014145 39 TIQKCYE-EMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 39 ~~~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 117 (430)
.+..++. .+..+++|++|+++++. +..+.... .+.+++|++|++++| .+..+ |...+.++++|++|++++|.
T Consensus 86 ~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l~~l-~~~~~~~l~~L~~L~Ls~N~- 158 (597)
T 3oja_B 86 QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV---FQNVPLLTVLVLERN-DLSSL-PRGIFHNTPKLTTLSMSNNN- 158 (597)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-
T ss_pred CCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHH---HcCCCCCCEEEeeCC-CCCCC-CHHHhccCCCCCEEEeeCCc-
Confidence 3444443 56688999999999887 66543322 257899999999998 46664 44446789999999999984
Q ss_pred ccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc-CCCceEEEecCCC
Q 014145 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-SNSVVHVTTDNKE 196 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~L~~L~l~~~~ 196 (430)
+..+ +...+..+++|++|+++++ .+..++ ...+++|+.|++.++. ++.++ +.+|+.|++++|.
T Consensus 159 l~~~---------~~~~~~~l~~L~~L~L~~N-~l~~~~-----~~~l~~L~~L~l~~n~-l~~l~~~~~L~~L~ls~n~ 222 (597)
T 3oja_B 159 LERI---------EDDTFQATTSLQNLQLSSN-RLTHVD-----LSLIPSLFHANVSYNL-LSTLAIPIAVEELDASHNS 222 (597)
T ss_dssp CCBC---------CTTTTTTCTTCCEEECTTS-CCSBCC-----GGGCTTCSEEECCSSC-CSEEECCTTCSEEECCSSC
T ss_pred CCCC---------ChhhhhcCCcCcEEECcCC-CCCCcC-----hhhhhhhhhhhcccCc-cccccCCchhheeeccCCc
Confidence 5555 3444588999999999986 444442 5678899999998875 55544 6788888888887
Q ss_pred CCccc-----CCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCc
Q 014145 197 PEKLT-----SEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS 271 (430)
Q Consensus 197 ~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l 271 (430)
+..+. +++.+.+.+..-......+.+++|+.|+++++ .+..+.+..+ ..+++|+.|+++++ .+..+|...
T Consensus 223 l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~Ls~N-~l~~l~~~~ 297 (597)
T 3oja_B 223 INVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPF---VKMQRLERLYISNN-RLVALNLYG 297 (597)
T ss_dssp CCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCEEESGGG---TTCSSCCEEECTTS-CCCEEECSS
T ss_pred ccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCC-ccCCCCHHHh---cCccCCCEEECCCC-CCCCCCccc
Confidence 65432 23333332211111234677899999999996 6777656665 78999999999996 567778777
Q ss_pred ccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCC
Q 014145 272 WHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLP 344 (430)
Q Consensus 272 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 344 (430)
..+++|+.|++++|. +..++. .+..+++|++|++++|.. ..+. ...+++|++|++.+++
T Consensus 298 ~~l~~L~~L~Ls~N~-l~~i~~--~~~~l~~L~~L~L~~N~l-~~~~----------~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 298 QPIPTLKVLDLSHNH-LLHVER--NQPQFDRLENLYLDHNSI-VTLK----------LSTHHTLKNLTLSHND 356 (597)
T ss_dssp SCCTTCCEEECCSSC-CCCCGG--GHHHHTTCSEEECCSSCC-CCCC----------CCTTCCCSEEECCSSC
T ss_pred ccCCCCcEEECCCCC-CCccCc--ccccCCCCCEEECCCCCC-CCcC----------hhhcCCCCEEEeeCCC
Confidence 789999999999974 566654 357899999999999763 3332 2237899999999875
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=7.1e-18 Score=168.54 Aligned_cols=291 Identities=13% Similarity=0.199 Sum_probs=190.8
Q ss_pred ccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccc
Q 014145 47 MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEE 126 (430)
Q Consensus 47 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 126 (430)
+..+++|++|+++++. ++.+.. . ..+++|++|++++| .+...++ +.++++|++|++++| .+..+
T Consensus 64 ~~~l~~L~~L~Ls~n~-l~~~~~-~----~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~~----- 127 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQ-LTDITP-L----KNLTKLVDILMNNN-QIADITP---LANLTNLTGLTLFNN-QITDI----- 127 (466)
T ss_dssp GGGCTTCCEEECCSSC-CCCCGG-G----TTCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCC-----
T ss_pred hhhhcCCCEEECCCCc-cCCchh-h----hccccCCEEECCCC-ccccChh---hcCCCCCCEEECCCC-CCCCC-----
Confidence 5568889999988876 665433 2 57888999999887 3555433 567889999999888 45554
Q ss_pred ccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc----CCCceEEEecCCCCCcccC
Q 014145 127 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTS 202 (430)
Q Consensus 127 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~ 202 (430)
+. +..+++|++|+++++ .+..++. +..+++|++|.+.+. +...+ .++|+.|++++|.+..+..
T Consensus 128 ----~~--~~~l~~L~~L~l~~n-~l~~~~~----~~~l~~L~~L~l~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 194 (466)
T 1o6v_A 128 ----DP--LKNLTNLNRLELSSN-TISDISA----LSGLTSLQQLSFGNQ--VTDLKPLANLTTLERLDISSNKVSDISV 194 (466)
T ss_dssp ----GG--GTTCTTCSEEEEEEE-EECCCGG----GTTCTTCSEEEEEES--CCCCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred ----hH--HcCCCCCCEEECCCC-ccCCChh----hccCCcccEeecCCc--ccCchhhccCCCCCEEECcCCcCCCChh
Confidence 22 377889999999886 3444432 678889999988642 33222 5689999999998665432
Q ss_pred ---CCcee---eecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCC
Q 014145 203 ---EENFF---LTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLEN 276 (430)
Q Consensus 203 ---~~~l~---~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~ 276 (430)
+++++ +.+..-......+.+++|+.|+++++ .++.+. .+ ..+++|+.|+++++. +..++. +..+++
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~--~l---~~l~~L~~L~l~~n~-l~~~~~-~~~l~~ 266 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN-QLKDIG--TL---ASLTNLTDLDLANNQ-ISNLAP-LSGLTK 266 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCG--GG---GGCTTCSEEECCSSC-CCCCGG-GTTCTT
T ss_pred hccCCCCCEEEecCCcccccccccccCCCCEEECCCC-Ccccch--hh---hcCCCCCEEECCCCc-cccchh-hhcCCC
Confidence 22222 22111111112455777888888775 444431 22 667888888888764 333332 567788
Q ss_pred CCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCccc
Q 014145 277 LATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYAL 356 (430)
Q Consensus 277 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~ 356 (430)
|+.|++++|. +..++. +..+++|++|++++|. +..+. ....+++|++|++.++ .++.+.. ..
T Consensus 267 L~~L~l~~n~-l~~~~~---~~~l~~L~~L~L~~n~-l~~~~---------~~~~l~~L~~L~L~~n-~l~~~~~---~~ 328 (466)
T 1o6v_A 267 LTELKLGANQ-ISNISP---LAGLTALTNLELNENQ-LEDIS---------PISNLKNLTYLTLYFN-NISDISP---VS 328 (466)
T ss_dssp CSEEECCSSC-CCCCGG---GTTCTTCSEEECCSSC-CSCCG---------GGGGCTTCSEEECCSS-CCSCCGG---GG
T ss_pred CCEEECCCCc-cCcccc---ccCCCccCeEEcCCCc-ccCch---------hhcCCCCCCEEECcCC-cCCCchh---hc
Confidence 8888888763 444443 5667888888888764 33332 1223788899999887 4555443 23
Q ss_pred CCCCccEEeeccCCCCcccCCCCcCCCCceeeeccccC
Q 014145 357 EFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 357 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 394 (430)
.+++|++|++.+| .++.++ ....+++|+.+++.++.
T Consensus 329 ~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 329 SLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp GCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC
T ss_pred cCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc
Confidence 4789999999887 455553 35578899999997654
No 24
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.80 E-value=4.8e-18 Score=169.09 Aligned_cols=272 Identities=14% Similarity=0.083 Sum_probs=155.4
Q ss_pred cccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccc
Q 014145 46 EMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLE 125 (430)
Q Consensus 46 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 125 (430)
++..+++|++|+++++. ++.+ +...+++|++|++++|. +..+ + +.++++|++|++++| .+..+
T Consensus 59 ~l~~l~~L~~L~Ls~n~-l~~~------~~~~l~~L~~L~Ls~N~-l~~~-~---~~~l~~L~~L~L~~N-~l~~l---- 121 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNN-ITTL------DLSQNTNLTYLACDSNK-LTNL-D---VTPLTKLTYLNCDTN-KLTKL---- 121 (457)
T ss_dssp TGGGCTTCSEEECCSSC-CSCC------CCTTCTTCSEEECCSSC-CSCC-C---CTTCTTCCEEECCSS-CCSCC----
T ss_pred hhcccCCCCEEEccCCc-CCeE------ccccCCCCCEEECcCCC-Ccee-e---cCCCCcCCEEECCCC-cCCee----
Confidence 34556666666666654 5542 22456666666666653 4442 2 345666666666666 33333
Q ss_pred cccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc---CCCceEEEecCCCCCcccC
Q 014145 126 ELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTS 202 (430)
Q Consensus 126 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~ 202 (430)
+ +..+++|++|+++++ .+..++ +..+++|++|++.+|..+..++ .++|+.|++++|.+.++.
T Consensus 122 -----~---~~~l~~L~~L~l~~N-~l~~l~-----l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~- 186 (457)
T 3bz5_A 122 -----D---VSQNPLLTYLNCARN-TLTEID-----VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD- 186 (457)
T ss_dssp -----C---CTTCTTCCEEECTTS-CCSCCC-----CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC-
T ss_pred -----c---CCCCCcCCEEECCCC-ccceec-----cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec-
Confidence 1 255667777777664 333331 4566677777777665454433 456677777776655532
Q ss_pred CCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEE
Q 014145 203 EENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEV 282 (430)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l 282 (430)
.+.+++|+.|+++++ .++.+. + ..+++|+.|+++++ .+..+| +..+++|+.|++
T Consensus 187 ----------------l~~l~~L~~L~l~~N-~l~~~~---l---~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l 240 (457)
T 3bz5_A 187 ----------------VSQNKLLNRLNCDTN-NITKLD---L---NQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDC 240 (457)
T ss_dssp ----------------CTTCTTCCEEECCSS-CCSCCC---C---TTCTTCSEEECCSS-CCSCCC--CTTCTTCSEEEC
T ss_pred ----------------cccCCCCCEEECcCC-cCCeec---c---ccCCCCCEEECcCC-cccccC--ccccCCCCEEEe
Confidence 456677888888774 455441 2 66778888888775 344555 567778888888
Q ss_pred ccCCCcccccCchhhccccccceEee----------ccccccchhhcccccccCCcceeecccceEeccCCCCCceeccC
Q 014145 283 SKCHGLINVLTLSTSESLVNLGRMKI----------ADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLG 352 (430)
Q Consensus 283 ~~c~~l~~l~~~~~~~~l~~L~~L~l----------~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 352 (430)
+++ .+..++ .+.+++|+.|++ ++|..+..++. ..+++|+.|++++|+.+..++..
T Consensus 241 ~~N-~l~~~~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~----------~~l~~L~~L~Ls~n~~l~~l~~~ 305 (457)
T 3bz5_A 241 SVN-PLTELD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA----------EGCRKIKELDVTHNTQLYLLDCQ 305 (457)
T ss_dssp CSS-CCSCCC----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC----------TTCTTCCCCCCTTCTTCCEEECT
T ss_pred eCC-cCCCcC----HHHCCCCCEEeccCCCCCEEECCCCccCCcccc----------cccccCCEEECCCCcccceeccC
Confidence 775 344443 234444544443 33332222221 12577888888887766665531
Q ss_pred C------cccCCCCccEEeeccCCCCcccCCCCcCCCCceeeecccc
Q 014145 353 N------YALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 393 (430)
Q Consensus 353 ~------~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~ 393 (430)
. ....+++|++|+++++ +++.++ +..+++|+.+++.+.
T Consensus 306 ~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 306 AAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNA 349 (457)
T ss_dssp TCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSS
T ss_pred CCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCC
Confidence 1 0123456666666554 344443 456778888887553
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.79 E-value=8.3e-18 Score=168.47 Aligned_cols=273 Identities=14% Similarity=0.088 Sum_probs=203.4
Q ss_pred CCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccc
Q 014145 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~ 155 (430)
...++++.|+++++ ++..+.+.. +.++++|++|++++| .+..+ +...+..+++|++|+++++ .+..+
T Consensus 29 ~~~~~l~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~i~~~---------~~~~~~~l~~L~~L~L~~n-~l~~~ 95 (477)
T 2id5_A 29 GIPTETRLLDLGKN-RIKTLNQDE-FASFPHLEELELNEN-IVSAV---------EPGAFNNLFNLRTLGLRSN-RLKLI 95 (477)
T ss_dssp CCCTTCSEEECCSS-CCCEECTTT-TTTCTTCCEEECTTS-CCCEE---------CTTTTTTCTTCCEEECCSS-CCCSC
T ss_pred CCCCCCcEEECCCC-ccceECHhH-ccCCCCCCEEECCCC-ccCEe---------ChhhhhCCccCCEEECCCC-cCCcc
Confidence 34578999999997 466654443 788999999999998 56666 3344588999999999986 56666
Q ss_pred cCCccccccCCCccEEEeccCCCccccc------CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEe
Q 014145 156 CNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLE 229 (430)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ 229 (430)
+.. .+..+++|++|++.++. ++... .++|+.|++++|.+..+.+ ..+..+++|++|+
T Consensus 96 ~~~--~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------------~~~~~l~~L~~L~ 158 (477)
T 2id5_A 96 PLG--VFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISH--------------RAFSGLNSLEQLT 158 (477)
T ss_dssp CTT--SSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECT--------------TSSTTCTTCCEEE
T ss_pred Ccc--cccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeCh--------------hhccCCCCCCEEE
Confidence 543 25689999999999986 44432 5689999999998776541 2356789999999
Q ss_pred cccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeec
Q 014145 230 LSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIA 309 (430)
Q Consensus 230 l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~ 309 (430)
++++ .++.+....+ ..+++|+.|++.++......+..+..+++|+.|++++|..+..++.. .....+|++|+++
T Consensus 159 l~~n-~l~~~~~~~l---~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~ 232 (477)
T 2id5_A 159 LEKC-NLTSIPTEAL---SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN--CLYGLNLTSLSIT 232 (477)
T ss_dssp EESC-CCSSCCHHHH---TTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT--TTTTCCCSEEEEE
T ss_pred CCCC-cCcccChhHh---cccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc--cccCccccEEECc
Confidence 9996 5666554444 77899999999997544433445778999999999999888887653 3344589999999
Q ss_pred cccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeee
Q 014145 310 DCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVK 389 (430)
Q Consensus 310 ~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~ 389 (430)
+|. +..+... ....+++|++|+++++ .++.++.. ....+++|++|++.++.-....+..+..+++|++|+
T Consensus 233 ~n~-l~~~~~~-------~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 302 (477)
T 2id5_A 233 HCN-LTAVPYL-------AVRHLVYLRFLNLSYN-PISTIEGS-MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302 (477)
T ss_dssp SSC-CCSCCHH-------HHTTCTTCCEEECCSS-CCCEECTT-SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEE
T ss_pred CCc-ccccCHH-------HhcCccccCeeECCCC-cCCccChh-hccccccCCEEECCCCccceECHHHhcCcccCCEEE
Confidence 874 4443211 1123789999999987 47777642 234689999999999855444566677899999999
Q ss_pred ccccC
Q 014145 390 PTEEE 394 (430)
Q Consensus 390 l~~~~ 394 (430)
+.++.
T Consensus 303 L~~N~ 307 (477)
T 2id5_A 303 VSGNQ 307 (477)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 97753
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.79 E-value=7.3e-18 Score=172.49 Aligned_cols=135 Identities=17% Similarity=0.125 Sum_probs=77.8
Q ss_pred hhcccccEEEeecCCCccccc-CCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccC
Q 014145 248 KAFANLIRLKISECSKLQKLV-TPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEA 326 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 326 (430)
..+++|+.|+++++......+ ..+..+++|+.|++++|.-....+. .+..+++|++|++++|...... .+
T Consensus 393 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~-------~p 463 (570)
T 2z63_A 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG--IFNGLSSLEVLKMAGNSFQENF-------LP 463 (570)
T ss_dssp ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT--TTTTCTTCCEEECTTCEEGGGE-------EC
T ss_pred cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh--hhhcCCcCcEEECcCCcCcccc-------ch
Confidence 444555555555543222222 2344566666666666542222221 2455677777777766432111 11
Q ss_pred CcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccC-CCCcCCCCceeeeccccC
Q 014145 327 KGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFS-QGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 327 ~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~l~l~~~~ 394 (430)
.....+++|++|++.+| .++.+... ....+++|++|++++| .++.++ ..+..+++|+++++.+++
T Consensus 464 ~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 464 DIFTELRNLTFLDLSQC-QLEQLSPT-AFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp SCCTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhhcccCCCEEECCCC-ccccCChh-hhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 12233788899999887 55655331 2345889999999987 455554 446678999999996654
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=1.2e-17 Score=170.86 Aligned_cols=153 Identities=13% Similarity=0.137 Sum_probs=109.6
Q ss_pred CCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcc---cccCCcccCCCCCEEEEccCCCccc-ccCch
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQ---KLVTPSWHLENLATLEVSKCHGLIN-VLTLS 295 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~---~l~~~l~~l~~L~~L~l~~c~~l~~-l~~~~ 295 (430)
..+++|++|+++++ .++...+..+ ..+++|+.|+++++. +. .+|..+..+++|+.|+++++. +.. ++..
T Consensus 350 ~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~- 422 (562)
T 3a79_B 350 PSPSSFTFLNFTQN-VFTDSVFQGC---STLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDR- 422 (562)
T ss_dssp SSCCCCCEEECCSS-CCCTTTTTTC---CSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSC-
T ss_pred cCCCCceEEECCCC-ccccchhhhh---cccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCc-CCCccChh-
Confidence 56778888888885 4554334444 677888888888863 44 334456778888888888875 443 5432
Q ss_pred hhccccccceEeeccccccchhhcccccccCCcceee-cccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcc
Q 014145 296 TSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVF-EELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKI 374 (430)
Q Consensus 296 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 374 (430)
.+..+++|++|+++++..-..++. .+ ++|++|+++++ .++.++.+. ..+++|++|+++++ .++.
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~-----------~l~~~L~~L~L~~N-~l~~ip~~~--~~l~~L~~L~L~~N-~l~~ 487 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVFR-----------CLPPKVKVLDLHNN-RIMSIPKDV--THLQALQELNVASN-QLKS 487 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGGS-----------SCCTTCSEEECCSS-CCCCCCTTT--TSSCCCSEEECCSS-CCCC
T ss_pred hhcCcccCCEEECCCCCCCcchhh-----------hhcCcCCEEECCCC-cCcccChhh--cCCCCCCEEECCCC-CCCC
Confidence 345678888898888754333321 13 68999999987 788887643 36899999999986 6678
Q ss_pred cCCC-CcCCCCceeeeccccC
Q 014145 375 FSQG-VVDAPKLNKVKPTEEE 394 (430)
Q Consensus 375 ~~~~-~~~~~~L~~l~l~~~~ 394 (430)
+|.. +..+++|+.+++.+++
T Consensus 488 l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 488 VPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCTTSTTTCTTCCCEECCSCC
T ss_pred CCHHHHhcCCCCCEEEecCCC
Confidence 8877 7789999999997654
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=178.49 Aligned_cols=133 Identities=14% Similarity=0.208 Sum_probs=83.8
Q ss_pred cccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccc
Q 014145 46 EMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLE 125 (430)
Q Consensus 46 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 125 (430)
.+..+++|++|+++++. +..+.... ...+++|++|+++++. +..+++.. +.++++|++|++++| .+..+
T Consensus 47 ~~~~l~~L~~L~Ls~n~-i~~i~~~~---~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n-~l~~l---- 115 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCE-IQTIEDGA---YQSLSHLSTLILTGNP-IQSLALGA-FSGLSSLQKLVAVET-NLASL---- 115 (570)
T ss_dssp TTTTCSSCCEEECTTCC-CCEECTTT---TTTCTTCCEEECTTCC-CCEECTTT-TTTCTTCCEEECTTS-CCCCS----
T ss_pred HhhCCCCceEEECCCCc-CCccCccc---ccCchhCCEEeCcCCc-CCccCHhh-hcCcccccccccccc-ccccC----
Confidence 35567888888888775 66543322 1467888888888863 55544333 667888888888887 35544
Q ss_pred cccCCccCcCCcCCccceeecCCcccccc--ccCCccccccCCCccEEEeccCCCcccccC------CCc----eEEEec
Q 014145 126 ELNADKEHIGPLFPKLFELTLMDLPKLKR--FCNFTENIIEMPELRYLAIENCPDMETFIS------NSV----VHVTTD 193 (430)
Q Consensus 126 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~------~~L----~~L~l~ 193 (430)
+...+..+++|++|+++++. +.. +|.. +..+++|++|++.++. ++..++ ..+ +.++++
T Consensus 116 -----~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~---~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 116 -----ENFPIGHLKTLKELNVAHNL-IQSFKLPEY---FSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp -----TTCSCTTCTTCCEEECCSSC-CCCCCCCGG---GGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECT
T ss_pred -----CCccccccccccEEecCCCc-cceecChhh---hcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccC
Confidence 23224778888888888763 332 3332 6678888888888775 443321 123 566666
Q ss_pred CCCCCc
Q 014145 194 NKEPEK 199 (430)
Q Consensus 194 ~~~~~~ 199 (430)
+|.+..
T Consensus 186 ~n~l~~ 191 (570)
T 2z63_A 186 LNPMNF 191 (570)
T ss_dssp TCCCCE
T ss_pred CCCcee
Confidence 665443
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=1.5e-18 Score=176.87 Aligned_cols=109 Identities=16% Similarity=0.162 Sum_probs=52.3
Q ss_pred CCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceecc-CCc
Q 014145 276 NLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCL-GNY 354 (430)
Q Consensus 276 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~-~~~ 354 (430)
+|++|+++++. +..++.. +.+.+++|++|+++++.....++... . ....+++|++|+++++ .++.++. +..
T Consensus 311 ~L~~L~l~~n~-l~~ip~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~-~----~~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 382 (549)
T 2z81_A 311 KVKRITVENSK-VFLVPCS-FSQHLKSLEFLDLSENLMVEEYLKNS-A----CKGAWPSLQTLVLSQN-HLRSMQKTGEI 382 (549)
T ss_dssp TCCEEEEESSC-CCCCCHH-HHHHCTTCCEEECCSSCCCHHHHHHH-T----CTTSSTTCCEEECTTS-CCCCHHHHHHH
T ss_pred cceEEEeccCc-cccCCHH-HHhcCccccEEEccCCccccccccch-h----hhhccccCcEEEccCC-cccccccchhh
Confidence 44555555432 3333321 22456777777777765433222100 0 0112566666666664 4444321 111
Q ss_pred ccCCCCccEEeeccCCCCcccCCCCcCCCCceeeecccc
Q 014145 355 ALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 393 (430)
Q Consensus 355 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~ 393 (430)
...+++|++|++++| .++.+|.....+++|++|++.++
T Consensus 383 ~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N 420 (549)
T 2z81_A 383 LLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSST 420 (549)
T ss_dssp GGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTS
T ss_pred hhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCC
Confidence 223566666666665 44455555555555666665443
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.78 E-value=4.8e-18 Score=177.75 Aligned_cols=134 Identities=11% Similarity=0.130 Sum_probs=80.2
Q ss_pred ccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccc
Q 014145 47 MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEE 126 (430)
Q Consensus 47 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 126 (430)
+..+++|++|+++++. +..+.... ...+++|++|++++| .+..+++ ..+.++++|++|++++|. +..+
T Consensus 45 ~~~l~~L~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l~~l~~-~~~~~l~~L~~L~L~~n~-l~~~----- 112 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNT-ISKLEPEL---CQKLPMLKVLNLQHN-ELSQLSD-KTFAFCTNLTELHLMSNS-IQKI----- 112 (680)
T ss_dssp GGGGTTCSEEECCSSC-CCCCCTTH---HHHCTTCCEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSSC-CCCC-----
T ss_pred HhCCCcCcEEECCCCc-cCccCHHH---HhcccCcCEEECCCC-ccCccCh-hhhccCCCCCEEECCCCc-cCcc-----
Confidence 4556777777777665 44422111 135677777777776 3554333 235667777777777773 4444
Q ss_pred ccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc--------CCCceEEEecCCCCC
Q 014145 127 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--------SNSVVHVTTDNKEPE 198 (430)
Q Consensus 127 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--------~~~L~~L~l~~~~~~ 198 (430)
+...+..+++|++|+++++......+.. +..+++|++|++.++. ++..+ ..+|+.|++++|.+.
T Consensus 113 ----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 113 ----KNNPFVKQKNLITLDLSHNGLSSTKLGT---QVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp ----CSCTTTTCTTCCEEECCSSCCSCCCCCS---SSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred ----ChhHccccCCCCEEECCCCcccccCchh---hcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCccc
Confidence 3333477788888888776432222221 5567788888887764 33332 256788888777655
Q ss_pred cc
Q 014145 199 KL 200 (430)
Q Consensus 199 ~~ 200 (430)
++
T Consensus 185 ~~ 186 (680)
T 1ziw_A 185 EF 186 (680)
T ss_dssp CB
T ss_pred cc
Confidence 43
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.77 E-value=7.7e-18 Score=167.60 Aligned_cols=250 Identities=16% Similarity=0.147 Sum_probs=179.4
Q ss_pred ccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccc
Q 014145 47 MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEE 126 (430)
Q Consensus 47 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 126 (430)
+..+++|++|+++++. ++.+ +...+++|++|+++++ .+..+ + +..+++|++|++++|. +..+
T Consensus 81 ~~~l~~L~~L~Ls~N~-l~~~------~~~~l~~L~~L~L~~N-~l~~l-~---~~~l~~L~~L~l~~N~-l~~l----- 142 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNK-LTNL------DVTPLTKLTYLNCDTN-KLTKL-D---VSQNPLLTYLNCARNT-LTEI----- 142 (457)
T ss_dssp CTTCTTCSEEECCSSC-CSCC------CCTTCTTCCEEECCSS-CCSCC-C---CTTCTTCCEEECTTSC-CSCC-----
T ss_pred cccCCCCCEEECcCCC-Ccee------ecCCCCcCCEEECCCC-cCCee-c---CCCCCcCCEEECCCCc-ccee-----
Confidence 6688999999999887 7663 2367999999999998 46654 3 5679999999999984 5444
Q ss_pred ccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc---CCCceEEEecCCCCCcccCC
Q 014145 127 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSE 203 (430)
Q Consensus 127 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~ 203 (430)
+ +..+++|++|+++++..+..++ +..+++|++|++.+|. ++.++ .++|+.|++++|.+..+.
T Consensus 143 ----~---l~~l~~L~~L~l~~n~~~~~~~-----~~~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L~l~~N~l~~~~-- 207 (457)
T 3bz5_A 143 ----D---VSHNTQLTELDCHLNKKITKLD-----VTPQTQLTTLDCSFNK-ITELDVSQNKLLNRLNCDTNNITKLD-- 207 (457)
T ss_dssp ----C---CTTCTTCCEEECTTCSCCCCCC-----CTTCTTCCEEECCSSC-CCCCCCTTCTTCCEEECCSSCCSCCC--
T ss_pred ----c---cccCCcCCEEECCCCCcccccc-----cccCCcCCEEECCCCc-cceeccccCCCCCEEECcCCcCCeec--
Confidence 1 3678999999999987776662 6688999999999885 66655 568999999999877643
Q ss_pred CceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCC------
Q 014145 204 ENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENL------ 277 (430)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L------ 277 (430)
.+.+++|+.|+++++ .++.++ + ..+++|+.|+++++. +..++ ...+++|
T Consensus 208 ---------------l~~l~~L~~L~Ls~N-~l~~ip---~---~~l~~L~~L~l~~N~-l~~~~--~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 208 ---------------LNQNIQLTFLDCSSN-KLTEID---V---TPLTQLTYFDCSVNP-LTELD--VSTLSKLTTLHCI 262 (457)
T ss_dssp ---------------CTTCTTCSEEECCSS-CCSCCC---C---TTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECT
T ss_pred ---------------cccCCCCCEEECcCC-cccccC---c---cccCCCCEEEeeCCc-CCCcC--HHHCCCCCEEecc
Confidence 567899999999985 566653 3 678999999999864 44444 2344444
Q ss_pred ----CEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCC
Q 014145 278 ----ATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGN 353 (430)
Q Consensus 278 ----~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~ 353 (430)
+.|++++|..+..++ .+.+++|++|++++|..++.++.. .++|+.|+++++++|+.+....
T Consensus 263 ~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~-----------~~~L~~L~l~~~~~L~~L~L~~ 327 (457)
T 3bz5_A 263 QTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQ-----------AAGITELDLSQNPKLVYLYLNN 327 (457)
T ss_dssp TCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECT-----------TCCCSCCCCTTCTTCCEEECTT
T ss_pred CCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccC-----------CCcceEechhhcccCCEEECCC
Confidence 555566665555554 356789999999999877766521 2344444555555444443211
Q ss_pred ------cccCCCCccEEeeccC
Q 014145 354 ------YALEFPSLEHVVVRQC 369 (430)
Q Consensus 354 ------~~~~~~~L~~L~l~~c 369 (430)
....+++|+.|+++++
T Consensus 328 N~l~~l~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 328 TELTELDVSHNTKLKSLSCVNA 349 (457)
T ss_dssp CCCSCCCCTTCTTCSEEECCSS
T ss_pred CcccccccccCCcCcEEECCCC
Confidence 1234788888888764
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.77 E-value=1.4e-17 Score=168.71 Aligned_cols=133 Identities=14% Similarity=0.146 Sum_probs=80.2
Q ss_pred hcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccC-chhhccccccceEeeccccccchhhcccccccCC
Q 014145 249 AFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLT-LSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAK 327 (430)
Q Consensus 249 ~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 327 (430)
.+++|++|+++++.....+|..+..+++|++|++++|. +..++. ...++.+++|++|+++++.....++..
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~------- 393 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG------- 393 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC-------
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccccc-------
Confidence 45666777776664444455566667777777777653 333221 112456677777777766432223210
Q ss_pred cceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeeeccccC
Q 014145 328 GCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 328 ~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 394 (430)
....+++|++|+++++.--..++.. . .++|++|++++| .++.+|.....+++|+++++.++.
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~~~~--l--~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTIFRC--L--PPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGGGGS--C--CTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC
T ss_pred hhccCccCCEEECcCCCCCcchhhh--h--cccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc
Confidence 1223677888888776432333221 1 268899999887 566788776688999999997753
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.77 E-value=9.4e-18 Score=166.92 Aligned_cols=323 Identities=14% Similarity=0.104 Sum_probs=203.6
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
.++++|. + .++|++|+++++. ++.+.... ...+++|++|++++|.....+ +...+.++++|++|++++|. +
T Consensus 21 ~l~~lp~-l--~~~l~~L~Ls~n~-i~~~~~~~---~~~l~~L~~L~L~~n~~~~~i-~~~~~~~l~~L~~L~Ls~n~-l 91 (455)
T 3v47_A 21 GLHQVPE-L--PAHVNYVDLSLNS-IAELNETS---FSRLQDLQFLKVEQQTPGLVI-RNNTFRGLSSLIILKLDYNQ-F 91 (455)
T ss_dssp CCSSCCC-C--CTTCCEEECCSSC-CCEECTTT---TSSCTTCCEEECCCCSTTCEE-CTTTTTTCTTCCEEECTTCT-T
T ss_pred CcccCCC-C--CCccCEEEecCCc-cCcCChhH---hccCccccEEECcCCcccceE-CcccccccccCCEEeCCCCc-c
Confidence 3555665 2 2799999999887 77653222 267999999999998533243 33347789999999999995 5
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc-------CCCceEEE
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-------SNSVVHVT 191 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-------~~~L~~L~ 191 (430)
..+ +...+..+++|++|+++++.....++.. ..+..+++|++|++.++. ++... .++|+.|+
T Consensus 92 ~~~---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~ 160 (455)
T 3v47_A 92 LQL---------ETGAFNGLANLEVLTLTQCNLDGAVLSG-NFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLD 160 (455)
T ss_dssp CEE---------CTTTTTTCTTCCEEECTTSCCBTHHHHS-STTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEE
T ss_pred Ccc---------ChhhccCcccCCEEeCCCCCCCccccCc-ccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEe
Confidence 555 2333488999999999997543333322 126689999999999986 44332 56899999
Q ss_pred ecCCCCCcccC--C-----CceeeecCcccccc-------------cCCCCCCCCEEecccCCCceeeccCCchhhhhcc
Q 014145 192 TDNKEPEKLTS--E-----ENFFLTDQIQPLFD-------------EKVAFPQLRYLELSRLHKVQHLWKENDESNKAFA 251 (430)
Q Consensus 192 l~~~~~~~~~~--~-----~~l~~~~~~~~~~~-------------~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~ 251 (430)
+++|.+.++.+ + .++..++....-+. ....+++|++|+++++ .+....+..+......+
T Consensus 161 L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~ 239 (455)
T 3v47_A 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN-GFKESMAKRFFDAIAGT 239 (455)
T ss_dssp CTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS-CCCHHHHHHHHHHTTTC
T ss_pred CCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCC-cccccchhhhhcccccc
Confidence 99998766442 1 12222221000000 0123356666666664 23222122111101226
Q ss_pred cccEEEeecCCCccccc----------CCc--ccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhc
Q 014145 252 NLIRLKISECSKLQKLV----------TPS--WHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQ 319 (430)
Q Consensus 252 ~L~~L~l~~c~~l~~l~----------~~l--~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 319 (430)
+|+.|+++++....... ..+ ...++|+.|+++++. +...+.. .++.+++|++|+++++.. ..+..
T Consensus 240 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~l-~~~~~ 316 (455)
T 3v47_A 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKS-VFSHFTDLEQLTLAQNEI-NKIDD 316 (455)
T ss_dssp CEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECTT-TTTTCTTCCEEECTTSCC-CEECT
T ss_pred ceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc-ccccchh-hcccCCCCCEEECCCCcc-cccCh
Confidence 67777776653322110 001 123689999999875 4443332 367889999999998753 33321
Q ss_pred ccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeeeccccC
Q 014145 320 LQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 320 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 394 (430)
.....+++|++|+++++ .++.+... ....+++|++|++++|.-....|..+..+++|++|++.++.
T Consensus 317 -------~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 317 -------NAFWGLTHLLKLNLSQN-FLGSIDSR-MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp -------TTTTTCTTCCEEECCSS-CCCEECGG-GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred -------hHhcCcccCCEEECCCC-ccCCcChh-HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 11223789999999997 66766432 23458999999999985544446677789999999997753
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=1.8e-17 Score=177.37 Aligned_cols=92 Identities=13% Similarity=0.145 Sum_probs=50.7
Q ss_pred hhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCc-cCchhHHHhcCCCCEEEEecCCCccEec
Q 014145 44 YEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLS-AIPANLIRCLNNLRWLEVRNCDSLEEVL 122 (430)
Q Consensus 44 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 122 (430)
+..+..+++|++|+++++. +..+.... ...+++|++|++++|. +.. .+....+.++++|++|++++|. +..+.
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~-l~~~~p~~---~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~ 139 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSK-IYFLHPDA---FQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLY 139 (844)
T ss_dssp TTTTSSCTTCCEEECTTCC-CCEECTTS---SCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCC-CCCCC
T ss_pred HHHhcCCCCCCEEECCCCc-CcccCHhH---ccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCc-ccccc
Confidence 3445567777777777665 55432211 1456777777777763 333 2222235567777777777763 32221
Q ss_pred ccccccCCccCcCCcCCccceeecCCc
Q 014145 123 HLEELNADKEHIGPLFPKLFELTLMDL 149 (430)
Q Consensus 123 ~~~~~~~~~~~l~~~l~~L~~L~l~~~ 149 (430)
+...+..+++|++|+++++
T Consensus 140 --------~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 140 --------LHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp --------CCGGGGTCSSCCEEEEESS
T ss_pred --------cchhHhhCCCCCEEECCCC
Confidence 1122356666777766664
No 35
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.76 E-value=2e-17 Score=157.57 Aligned_cols=232 Identities=20% Similarity=0.241 Sum_probs=168.0
Q ss_pred CCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCcccccccc
Q 014145 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 77 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
..++++.|+++++ ++..+++ . +..+++|++|++++|. +..+ |..+ ..+++|++|+++++ .+..+|
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~-~-l~~l~~L~~L~L~~n~-l~~l---------p~~~-~~l~~L~~L~Ls~n-~l~~lp 143 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPD-Q-AFRLSHLQHMTIDAAG-LMEL---------PDTM-QQFAGLETLTLARN-PLRALP 143 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCS-C-GGGGTTCSEEEEESSC-CCCC---------CSCG-GGGTTCSEEEEESC-CCCCCC
T ss_pred cccceeEEEccCC-CchhcCh-h-hhhCCCCCEEECCCCC-ccch---------hHHH-hccCCCCEEECCCC-ccccCc
Confidence 4588999999997 4665444 3 5669999999999984 5555 5555 88999999999986 455666
Q ss_pred CCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCc
Q 014145 157 NFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKV 236 (430)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 236 (430)
.. +..+++|++|++.+|..+..++. .+....+. .....+++|++|+++++ .+
T Consensus 144 ~~---l~~l~~L~~L~L~~n~~~~~~p~-~~~~~~~~-----------------------~~~~~l~~L~~L~L~~n-~l 195 (328)
T 4fcg_A 144 AS---IASLNRLRELSIRACPELTELPE-PLASTDAS-----------------------GEHQGLVNLQSLRLEWT-GI 195 (328)
T ss_dssp GG---GGGCTTCCEEEEEEETTCCCCCS-CSEEEC-C-----------------------CCEEESTTCCEEEEEEE-CC
T ss_pred HH---HhcCcCCCEEECCCCCCccccCh-hHhhccch-----------------------hhhccCCCCCEEECcCC-Cc
Confidence 54 78899999999999876654432 12111110 11345778888888885 56
Q ss_pred eeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccch
Q 014145 237 QHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQ 316 (430)
Q Consensus 237 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~ 316 (430)
+.++ ..+ ..+++|+.|+++++ .+..+|..+..+++|++|++++|.....++. .++.+++|++|++++|...+.
T Consensus 196 ~~lp-~~l---~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~--~~~~l~~L~~L~L~~n~~~~~ 268 (328)
T 4fcg_A 196 RSLP-ASI---ANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPP--IFGGRAPLKRLILKDCSNLLT 268 (328)
T ss_dssp CCCC-GGG---GGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCC--CTTCCCCCCEEECTTCTTCCB
T ss_pred Ccch-Hhh---cCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHH--HhcCCCCCCEEECCCCCchhh
Confidence 6553 233 77888999999886 4556777777888899999998887777665 367788899999988876655
Q ss_pred hhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeecc
Q 014145 317 IIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ 368 (430)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~ 368 (430)
++. ....+++|++|++++|+.++.++.. ...+++|+.+.+..
T Consensus 269 ~p~--------~~~~l~~L~~L~L~~n~~~~~iP~~--l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 269 LPL--------DIHRLTQLEKLDLRGCVNLSRLPSL--IAQLPANCIILVPP 310 (328)
T ss_dssp CCT--------TGGGCTTCCEEECTTCTTCCCCCGG--GGGSCTTCEEECCG
T ss_pred cch--------hhhcCCCCCEEeCCCCCchhhccHH--HhhccCceEEeCCH
Confidence 541 2234788999999998888888863 34588888888764
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.76 E-value=4.2e-17 Score=170.52 Aligned_cols=324 Identities=14% Similarity=0.138 Sum_probs=186.1
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
+.++|..+. +++++|+++++. ++.+.... ...+++|++|+++++ .+....+. .+.++++|++|++++| .+.
T Consensus 16 L~~ip~~~~--~~l~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~ 86 (680)
T 1ziw_A 16 LTQVPDDLP--TNITVLNLTHNQ-LRRLPAAN---FTRYSQLTSLDVGFN-TISKLEPE-LCQKLPMLKVLNLQHN-ELS 86 (680)
T ss_dssp CSSCCSCSC--TTCSEEECCSSC-CCCCCGGG---GGGGTTCSEEECCSS-CCCCCCTT-HHHHCTTCCEEECCSS-CCC
T ss_pred ccccccccC--CCCcEEECCCCC-CCCcCHHH---HhCCCcCcEEECCCC-ccCccCHH-HHhcccCcCEEECCCC-ccC
Confidence 555665543 699999999886 66544322 256899999999997 46665454 4888999999999998 466
Q ss_pred EecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc------CCCceEEEec
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTD 193 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~l~ 193 (430)
.+ |...+..+++|++|+++++ .+..++.. .+..+++|++|++.+|. ++..+ ..+|++|+++
T Consensus 87 ~l---------~~~~~~~l~~L~~L~L~~n-~l~~~~~~--~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~ 153 (680)
T 1ziw_A 87 QL---------SDKTFAFCTNLTELHLMSN-SIQKIKNN--PFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLS 153 (680)
T ss_dssp CC---------CTTTTTTCTTCSEEECCSS-CCCCCCSC--TTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECC
T ss_pred cc---------ChhhhccCCCCCEEECCCC-ccCccChh--HccccCCCCEEECCCCc-ccccCchhhcccccCCEEEcc
Confidence 66 5555689999999999997 45555422 26789999999999986 44433 4689999999
Q ss_pred CCCCCcccC-------CCceeeec---C-ccccc-ccCCC---------------------------CCCCCEEecccCC
Q 014145 194 NKEPEKLTS-------EENFFLTD---Q-IQPLF-DEKVA---------------------------FPQLRYLELSRLH 234 (430)
Q Consensus 194 ~~~~~~~~~-------~~~l~~~~---~-~~~~~-~~~~~---------------------------~~~L~~L~l~~~~ 234 (430)
+|.+..+.+ .+++..++ . ..... ..... .++|++|+++++
T Consensus 154 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n- 232 (680)
T 1ziw_A 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS- 232 (680)
T ss_dssp SSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTS-
T ss_pred CCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCC-
Confidence 998665431 12333221 0 00000 00111 144555555553
Q ss_pred CceeeccCCchhhhhcc--cccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeecccc
Q 014145 235 KVQHLWKENDESNKAFA--NLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 235 ~l~~~~~~~~~~~~~l~--~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 312 (430)
.+....+..+ ..++ +|+.|+++++......+..+..+++|++|+++++. +..++.. .+..+++|++|+++++.
T Consensus 233 ~l~~~~~~~~---~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~~~ 307 (680)
T 1ziw_A 233 QLSTTSNTTF---LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSH-SLHGLFNVRYLNLKRSF 307 (680)
T ss_dssp CCCEECTTTT---GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC-BSEECTT-TTTTCTTCCEEECTTCB
T ss_pred cccccChhHh---hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc-cCccChh-hhcCCCCccEEeccchh
Confidence 3444433333 3333 37777776654333333445566677777776653 3333222 24556677777776542
Q ss_pred ccchhhcccccc-cCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCC-CcccCCCC---cCCCCcee
Q 014145 313 MIEQIIQLQVGE-EAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPT-MKIFSQGV---VDAPKLNK 387 (430)
Q Consensus 313 ~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~-l~~~~~~~---~~~~~L~~ 387 (430)
.-..+....... .......+++|++|++.++ .++.+... ....+++|++|++++|.. +..++... ...++|+.
T Consensus 308 ~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~ 385 (680)
T 1ziw_A 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSN-MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385 (680)
T ss_dssp CCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTT-TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCE
T ss_pred hhcccccccccccChhhcccCCCCCEEECCCC-ccCCCChh-HhccccCCcEEECCCCchhhhhcchhhhcccccCcCce
Confidence 211110000000 0001122566777777665 34444321 223467777777777642 33333221 12356777
Q ss_pred eecccc
Q 014145 388 VKPTEE 393 (430)
Q Consensus 388 l~l~~~ 393 (430)
+++.++
T Consensus 386 L~L~~n 391 (680)
T 1ziw_A 386 LNLTKN 391 (680)
T ss_dssp EECTTS
T ss_pred EECCCC
Confidence 777554
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.75 E-value=6.3e-17 Score=154.13 Aligned_cols=154 Identities=13% Similarity=0.090 Sum_probs=73.8
Q ss_pred CCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhcc
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSES 299 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 299 (430)
..+++|++|+++++ .++.++. ...++|++|+++++......+..+..+++|++|+++++. +..++.. .+..
T Consensus 168 ~~l~~L~~L~l~~n-~l~~l~~------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~ 238 (330)
T 1xku_A 168 QGMKKLSYIRIADT-NITTIPQ------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNG-SLAN 238 (330)
T ss_dssp GGCTTCCEEECCSS-CCCSCCS------SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTT-TGGG
T ss_pred cCCCCcCEEECCCC-ccccCCc------cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChh-hccC
Confidence 34556666666653 3443322 112566666666653222223344556666666666543 3333321 2345
Q ss_pred ccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCc-----ccCCCCccEEeeccCCCCc-
Q 014145 300 LVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNY-----ALEFPSLEHVVVRQCPTMK- 373 (430)
Q Consensus 300 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~-----~~~~~~L~~L~l~~c~~l~- 373 (430)
+++|++|++++|. +..++ .....+++|++|++.++ .++.++...- ....++|+.+++.+++...
T Consensus 239 l~~L~~L~L~~N~-l~~lp--------~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 239 TPHLRELHLNNNK-LVKVP--------GGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp STTCCEEECCSSC-CSSCC--------TTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred CCCCCEEECCCCc-CccCC--------hhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCccccc
Confidence 5666666666553 22222 11122566666666654 3444433110 0123567777777665321
Q ss_pred -ccCCCCcCCCCceeeeccc
Q 014145 374 -IFSQGVVDAPKLNKVKPTE 392 (430)
Q Consensus 374 -~~~~~~~~~~~L~~l~l~~ 392 (430)
..|..+..+.+++.+++.+
T Consensus 309 ~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 309 EIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp GSCGGGGTTCCCGGGEEC--
T ss_pred ccCccccccccceeEEEecc
Confidence 2233344566677776644
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=6.6e-17 Score=154.16 Aligned_cols=284 Identities=12% Similarity=0.101 Sum_probs=161.4
Q ss_pred CcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCc
Q 014145 52 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 131 (430)
Q Consensus 52 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 131 (430)
+++.++++++. ++.+ |....++|+.|+++++ ++..+++.. +.++++|++|++++| .+..+ +
T Consensus 34 ~l~~l~~~~~~-l~~i------p~~~~~~l~~L~l~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~---------~ 94 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAV------PKEISPDTTLLDLQNN-DISELRKDD-FKGLQHLYALVLVNN-KISKI---------H 94 (332)
T ss_dssp ETTEEECCSSC-CSSC------CSCCCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEE---------C
T ss_pred cCCEEECCCCC-cccc------CCCCCCCCeEEECCCC-cCCccCHhH-hhCCCCCcEEECCCC-ccCcc---------C
Confidence 56777776654 4442 2233467777777776 355544433 566777788877777 35544 2
Q ss_pred cCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc------CCCceEEEecCCCCCcccCCCc
Q 014145 132 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTSEEN 205 (430)
Q Consensus 132 ~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~~~~~~~~ 205 (430)
...+..+++|++|+++++ .+..+|.. . .++|++|++.++. ++.++ .++|+.|++++|.+.....
T Consensus 95 ~~~~~~l~~L~~L~L~~n-~l~~l~~~---~--~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--- 164 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKN-HLVEIPPN---L--PSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGF--- 164 (332)
T ss_dssp GGGSTTCTTCCEEECCSS-CCCSCCSS---C--CTTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGS---
T ss_pred HhHhhCcCCCCEEECCCC-cCCccCcc---c--cccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCC---
Confidence 222467777777777775 44455432 2 2677777777664 44333 3567777777776543110
Q ss_pred eeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccC
Q 014145 206 FFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKC 285 (430)
Q Consensus 206 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c 285 (430)
.......+ +|+.|+++++ .++.++. ...++|++|+++++......+..+..+++|+.|+++++
T Consensus 165 ---------~~~~~~~l-~L~~L~l~~n-~l~~l~~------~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 165 ---------EPGAFDGL-KLNYLRISEA-KLTGIPK------DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227 (332)
T ss_dssp ---------CTTSSCSC-CCSCCBCCSS-BCSSCCS------SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS
T ss_pred ---------CcccccCC-ccCEEECcCC-CCCccCc------cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 00112233 7777777774 4554432 22367777777776433333345667777888887775
Q ss_pred CCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcc-----cCCCC
Q 014145 286 HGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYA-----LEFPS 360 (430)
Q Consensus 286 ~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~-----~~~~~ 360 (430)
.+..++.. .+..+++|++|+++++. +..++ .....+++|++|+++++ .++.++..... ...++
T Consensus 228 -~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~lp--------~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 228 -QIRMIENG-SLSFLPTLRELHLDNNK-LSRVP--------AGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp -CCCCCCTT-GGGGCTTCCEEECCSSC-CCBCC--------TTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCC
T ss_pred -cCCcCChh-HhhCCCCCCEEECCCCc-CeecC--------hhhhcCccCCEEECCCC-CCCccChhHcccccccccccc
Confidence 34444432 24567778888887763 33332 12233677777877775 45655432110 11466
Q ss_pred ccEEeeccCCCC--cccCCCCcCCCCceeeecccc
Q 014145 361 LEHVVVRQCPTM--KIFSQGVVDAPKLNKVKPTEE 393 (430)
Q Consensus 361 L~~L~l~~c~~l--~~~~~~~~~~~~L~~l~l~~~ 393 (430)
|+.|.+.+++.. ...+..+..+++|+.+++.++
T Consensus 296 l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp BSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 788888877643 233344556777777777543
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.75 E-value=6.7e-17 Score=165.29 Aligned_cols=317 Identities=14% Similarity=0.159 Sum_probs=180.5
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
.++.+|.++. ++|++|+++++. +..+.... ...+++|++|+++++ .+..+.|.. +.++++|++|++++|. +
T Consensus 42 ~L~~ip~~~~--~~L~~L~Ls~N~-i~~~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N~-l 112 (562)
T 3a79_B 42 NLTHVPKDLP--PRTKALSLSQNS-ISELRMPD---ISFLSELRVLRLSHN-RIRSLDFHV-FLFNQDLEYLDVSHNR-L 112 (562)
T ss_dssp CCCSCCTTSC--TTCCEEECCSSC-CCCCCGGG---TTTCTTCCEEECCSC-CCCEECTTT-TTTCTTCCEEECTTSC-C
T ss_pred CCccCCCCCC--CCcCEEECCCCC-ccccChhh---hccCCCccEEECCCC-CCCcCCHHH-hCCCCCCCEEECCCCc-C
Confidence 3455665442 788888888776 65543221 156788888888887 455544433 6678888888888874 6
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc---CCCc--eEEEec
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSV--VHVTTD 193 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L--~~L~l~ 193 (430)
..+ |.. .+++|++|+++++ .+..++.... +..+++|++|++.++. ++... ..++ +.|+++
T Consensus 113 ~~l---------p~~---~l~~L~~L~Ls~N-~l~~l~~p~~-~~~l~~L~~L~L~~n~-l~~~~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 113 QNI---------SCC---PMASLRHLDLSFN-DFDVLPVCKE-FGNLTKLTFLGLSAAK-FRQLDLLPVAHLHLSCILLD 177 (562)
T ss_dssp CEE---------CSC---CCTTCSEEECCSS-CCSBCCCCGG-GGGCTTCCEEEEECSB-CCTTTTGGGTTSCEEEEEEE
T ss_pred Ccc---------Ccc---ccccCCEEECCCC-CccccCchHh-hcccCcccEEecCCCc-cccCchhhhhhceeeEEEee
Confidence 666 333 5788888888875 3444432111 6678888888887754 33222 2334 777777
Q ss_pred CCCC--Cccc-----CC--------------------------Cceeeec--Cc-------cccccc-------------
Q 014145 194 NKEP--EKLT-----SE--------------------------ENFFLTD--QI-------QPLFDE------------- 218 (430)
Q Consensus 194 ~~~~--~~~~-----~~--------------------------~~l~~~~--~~-------~~~~~~------------- 218 (430)
+|.+ .... .+ +++..++ .. ...+..
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence 7654 2111 00 0111000 00 000000
Q ss_pred --------------CCCCCCCCEEecccCCCce-eeccCCc---------------------------------------
Q 014145 219 --------------KVAFPQLRYLELSRLHKVQ-HLWKEND--------------------------------------- 244 (430)
Q Consensus 219 --------------~~~~~~L~~L~l~~~~~l~-~~~~~~~--------------------------------------- 244 (430)
....++|++|+++++. +. .++...+
T Consensus 258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLT-ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EEEECHHHHHHHHHHHTTSSEEEEEEEEEE-ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEE
T ss_pred CCcCcHHHHHHHHHhhhcccccEEEEeccE-eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEE
Confidence 0001134444443321 11 1111000
Q ss_pred ----------hhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCc-hhhccccccceEeeccccc
Q 014145 245 ----------ESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTL-STSESLVNLGRMKIADCKM 313 (430)
Q Consensus 245 ----------~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~l~~L~~L~l~~c~~ 313 (430)
.....+++|+.|+++++.....+|..+..+++|+.|+++++ .+..++.. ..++.+++|++|+++++..
T Consensus 337 ~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l 415 (562)
T 3a79_B 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSL 415 (562)
T ss_dssp EEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCC
T ss_pred EccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcC
Confidence 00034567777777776544446666777788888888875 45544321 1246677888888877653
Q ss_pred cchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCC-CCccEEeeccCCCCcccCCCCcCCCCceeeeccc
Q 014145 314 IEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEF-PSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTE 392 (430)
Q Consensus 314 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~ 392 (430)
...+.. .....+++|++|+++++.--..++. .+ ++|++|++++| .++.+|.....+++|++|++.+
T Consensus 416 ~~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~-----~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~ 482 (562)
T 3a79_B 416 NSHAYD-------RTCAWAESILVLNLSSNMLTGSVFR-----CLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVAS 482 (562)
T ss_dssp BSCCSS-------CCCCCCTTCCEEECCSSCCCGGGGS-----SCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCS
T ss_pred CCccCh-------hhhcCcccCCEEECCCCCCCcchhh-----hhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCC
Confidence 221321 0122367888888888742222221 23 68999999987 7778888777899999999977
Q ss_pred cC
Q 014145 393 EE 394 (430)
Q Consensus 393 ~~ 394 (430)
+.
T Consensus 483 N~ 484 (562)
T 3a79_B 483 NQ 484 (562)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.74 E-value=1.3e-16 Score=170.78 Aligned_cols=316 Identities=13% Similarity=0.072 Sum_probs=191.2
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
+..+|. -.++|++|+++++. ++.+.... ...+++|++|++++|.....+.+.. ++++++|++|++++|. +.
T Consensus 16 L~~vP~---lp~~l~~LdLs~N~-i~~i~~~~---~~~l~~L~~LdLs~n~~~~~i~~~~-f~~L~~L~~L~Ls~N~-l~ 86 (844)
T 3j0a_A 16 LTQVPQ---VLNTTERLLLSFNY-IRTVTASS---FPFLEQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLGSSK-IY 86 (844)
T ss_dssp SSCCCS---SCTTCCEEEEESCC-CCEECSSS---CSSCCSCSEEEECTTCCCCEECTTT-TSSCTTCCEEECTTCC-CC
T ss_pred CCCCCC---CCCCcCEEECCCCc-CCccChhH---CcccccCeEEeCCCCCCccccCHHH-hcCCCCCCEEECCCCc-Cc
Confidence 445554 23678888888776 66543222 1567888888888875444443433 6778888888888874 55
Q ss_pred EecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc-------CCCceEEEe
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-------SNSVVHVTT 192 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-------~~~L~~L~l 192 (430)
.+ +.+.+..+++|++|+++++.....++.. ..+..+++|++|++.+|. ++... .++|+.|++
T Consensus 87 ~~---------~p~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 87 FL---------HPDAFQGLFHLFELRLYFCGLSDAVLKD-GYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDF 155 (844)
T ss_dssp EE---------CTTSSCSCSSCCCEECTTCCCSSCCSTT-CCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEE
T ss_pred cc---------CHhHccCCcccCEeeCcCCCCCcccccC-ccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEEC
Confidence 44 2333477888888888876433323222 125677888888888775 33221 457788888
Q ss_pred cCCCCCccc----------CCCceeeecC--cccccccCCCCC------CCCEEecccCCCceeeccCCch---------
Q 014145 193 DNKEPEKLT----------SEENFFLTDQ--IQPLFDEKVAFP------QLRYLELSRLHKVQHLWKENDE--------- 245 (430)
Q Consensus 193 ~~~~~~~~~----------~~~~l~~~~~--~~~~~~~~~~~~------~L~~L~l~~~~~l~~~~~~~~~--------- 245 (430)
++|.+..+. +++.+.+... ........+.++ .|+.|+++++. +.......+.
T Consensus 156 s~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~~l~ 234 (844)
T 3j0a_A 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG-WTVDITGNFSNAISKSQAF 234 (844)
T ss_dssp ESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC-SSTTTTSGGGGTSCSCCBS
T ss_pred CCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCc-CchhHHHHHHhhcCccccc
Confidence 877754332 2222222110 011111122222 49999999862 2111010000
Q ss_pred ------------------------hh--hhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhcc
Q 014145 246 ------------------------SN--KAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSES 299 (430)
Q Consensus 246 ------------------------~~--~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 299 (430)
.. ...++|+.|+++++......+..+..+++|+.|+++++. +..++.. .+..
T Consensus 235 ~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~-~~~~ 312 (844)
T 3j0a_A 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADE-AFYG 312 (844)
T ss_dssp EEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEECTT-TTTT
T ss_pred ceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCChH-HhcC
Confidence 00 113689999998875444445667788999999999864 5554432 3577
Q ss_pred ccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCC
Q 014145 300 LVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV 379 (430)
Q Consensus 300 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 379 (430)
+++|++|+++++. +..+. +.....+++|++|++.++ .++.++.. ....+++|++|+++++ .++.++.
T Consensus 313 l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N-~l~~i~~-- 379 (844)
T 3j0a_A 313 LDNLQVLNLSYNL-LGELY-------SSNFYGLPKVAYIDLQKN-HIAIIQDQ-TFKFLEKLQTLDLRDN-ALTTIHF-- 379 (844)
T ss_dssp CSSCCEEEEESCC-CSCCC-------SCSCSSCTTCCEEECCSC-CCCCCCSS-CSCSCCCCCEEEEETC-CSCCCSS--
T ss_pred CCCCCEEECCCCC-CCccC-------HHHhcCCCCCCEEECCCC-CCCccChh-hhcCCCCCCEEECCCC-CCCcccC--
Confidence 8999999998874 33332 112234789999999987 56666542 2345899999999886 4444433
Q ss_pred cCCCCceeeecccc
Q 014145 380 VDAPKLNKVKPTEE 393 (430)
Q Consensus 380 ~~~~~L~~l~l~~~ 393 (430)
+++|+.+.+.++
T Consensus 380 --~~~L~~L~l~~N 391 (844)
T 3j0a_A 380 --IPSIPDIFLSGN 391 (844)
T ss_dssp --CCSCSEEEEESC
T ss_pred --CCCcchhccCCC
Confidence 677777777654
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.74 E-value=6.5e-17 Score=154.21 Aligned_cols=277 Identities=15% Similarity=0.103 Sum_probs=193.0
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
.+.++|..+ +++|++|+++++. +..+.... ...+++|++|++++| .+..+.+.. +.++++|++|++++| .+
T Consensus 44 ~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l 114 (332)
T 2ft3_A 44 GLKAVPKEI--SPDTTLLDLQNND-ISELRKDD---FKGLQHLYALVLVNN-KISKIHEKA-FSPLRKLQKLYISKN-HL 114 (332)
T ss_dssp CCSSCCSCC--CTTCCEEECCSSC-CCEECTTT---TTTCTTCCEEECCSS-CCCEECGGG-STTCTTCCEEECCSS-CC
T ss_pred CccccCCCC--CCCCeEEECCCCc-CCccCHhH---hhCCCCCcEEECCCC-ccCccCHhH-hhCcCCCCEEECCCC-cC
Confidence 455666654 4799999999887 77654322 257899999999998 466654544 778999999999998 45
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccc--cc-----CCCceEEE
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMET--FI-----SNSVVHVT 191 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--~~-----~~~L~~L~ 191 (430)
..+ |..+ .++|++|+++++ .+..++.. .+..+++|++|++.++. ++. .. ..+|+.|+
T Consensus 115 ~~l---------~~~~---~~~L~~L~l~~n-~i~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~L~~L~ 178 (332)
T 2ft3_A 115 VEI---------PPNL---PSSLVELRIHDN-RIRKVPKG--VFSGLRNMNCIEMGGNP-LENSGFEPGAFDGLKLNYLR 178 (332)
T ss_dssp CSC---------CSSC---CTTCCEEECCSS-CCCCCCSG--GGSSCSSCCEEECCSCC-CBGGGSCTTSSCSCCCSCCB
T ss_pred Ccc---------Cccc---cccCCEEECCCC-ccCccCHh--HhCCCccCCEEECCCCc-cccCCCCcccccCCccCEEE
Confidence 555 4444 289999999986 45555432 25789999999999886 432 11 22788899
Q ss_pred ecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCccccc-CC
Q 014145 192 TDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TP 270 (430)
Q Consensus 192 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~ 270 (430)
+++|.+..+. ....++|++|+++++ .++.+....+ ..+++|+.|+++++. +..++ ..
T Consensus 179 l~~n~l~~l~-----------------~~~~~~L~~L~l~~n-~i~~~~~~~l---~~l~~L~~L~L~~N~-l~~~~~~~ 236 (332)
T 2ft3_A 179 ISEAKLTGIP-----------------KDLPETLNELHLDHN-KIQAIELEDL---LRYSKLYRLGLGHNQ-IRMIENGS 236 (332)
T ss_dssp CCSSBCSSCC-----------------SSSCSSCSCCBCCSS-CCCCCCTTSS---TTCTTCSCCBCCSSC-CCCCCTTG
T ss_pred CcCCCCCccC-----------------ccccCCCCEEECCCC-cCCccCHHHh---cCCCCCCEEECCCCc-CCcCChhH
Confidence 9999877755 233479999999985 6777665556 788999999999974 44444 45
Q ss_pred cccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCc--ceeecccceEeccCCCCCc-
Q 014145 271 SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKG--CVVFEELGYLGLDCLPSLT- 347 (430)
Q Consensus 271 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~c~~L~- 347 (430)
+..+++|++|++++| .+..++. .+..+++|++|+++++. +..+.... +... ...++.|+.|++.+++...
T Consensus 237 ~~~l~~L~~L~L~~N-~l~~lp~--~l~~l~~L~~L~l~~N~-l~~~~~~~---~~~~~~~~~~~~l~~L~l~~N~~~~~ 309 (332)
T 2ft3_A 237 LSFLPTLRELHLDNN-KLSRVPA--GLPDLKLLQVVYLHTNN-ITKVGVND---FCPVGFGVKRAYYNGISLFNNPVPYW 309 (332)
T ss_dssp GGGCTTCCEEECCSS-CCCBCCT--TGGGCTTCCEEECCSSC-CCBCCTTS---SSCSSCCSSSCCBSEEECCSSSSCGG
T ss_pred hhCCCCCCEEECCCC-cCeecCh--hhhcCccCCEEECCCCC-CCccChhH---ccccccccccccccceEeecCccccc
Confidence 778999999999987 5667765 36788999999999864 44443211 1110 1125779999999986431
Q ss_pred eeccCCcccCCCCccEEeeccCC
Q 014145 348 SFCLGNYALEFPSLEHVVVRQCP 370 (430)
Q Consensus 348 ~~~~~~~~~~~~~L~~L~l~~c~ 370 (430)
.+.. .....+++|+.+++.+++
T Consensus 310 ~~~~-~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 310 EVQP-ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GSCG-GGGTTBCCSTTEEC----
T ss_pred ccCc-ccccccchhhhhhccccc
Confidence 2222 123357889999988764
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=3.3e-16 Score=149.13 Aligned_cols=106 Identities=14% Similarity=0.148 Sum_probs=47.8
Q ss_pred hhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCC
Q 014145 248 KAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAK 327 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 327 (430)
..+++|+.|+++++ .+..+|.... ++|++|+++++. +..+... .+..+++|++|+++++. +..+.. .
T Consensus 168 ~~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~-------~ 234 (330)
T 1xku_A 168 QGMKKLSYIRIADT-NITTIPQGLP--PSLTELHLDGNK-ITKVDAA-SLKGLNNLAKLGLSFNS-ISAVDN-------G 234 (330)
T ss_dssp GGCTTCCEEECCSS-CCCSCCSSCC--TTCSEEECTTSC-CCEECTG-GGTTCTTCCEEECCSSC-CCEECT-------T
T ss_pred cCCCCcCEEECCCC-ccccCCcccc--ccCCEEECCCCc-CCccCHH-HhcCCCCCCEEECCCCc-CceeCh-------h
Confidence 44555566655554 2334443322 455556555543 3333221 23445555566555543 222110 0
Q ss_pred cceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccC
Q 014145 328 GCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC 369 (430)
Q Consensus 328 ~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c 369 (430)
....+++|++|+++++ .++.++.. ...+++|++|++++|
T Consensus 235 ~~~~l~~L~~L~L~~N-~l~~lp~~--l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 235 SLANTPHLRELHLNNN-KLVKVPGG--LADHKYIQVVYLHNN 273 (330)
T ss_dssp TGGGSTTCCEEECCSS-CCSSCCTT--TTTCSSCCEEECCSS
T ss_pred hccCCCCCCEEECCCC-cCccCChh--hccCCCcCEEECCCC
Confidence 1112455555555554 44444431 223555566665554
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=9.3e-17 Score=159.77 Aligned_cols=231 Identities=14% Similarity=0.102 Sum_probs=178.1
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
.+.++|.++. +++++|+++++. ++.+.... ...+++|+.|+++++ .+..+.+. .+.++++|++|++++| .+
T Consensus 65 ~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~Ls~n-~i~~~~~~-~~~~l~~L~~L~L~~n-~l 135 (452)
T 3zyi_A 65 GLSEVPQGIP--SNTRYLNLMENN-IQMIQADT---FRHLHHLEVLQLGRN-SIRQIEVG-AFNGLASLNTLELFDN-WL 135 (452)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSC-CCEECTTT---TTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CC
T ss_pred CcCccCCCCC--CCccEEECcCCc-CceECHHH---cCCCCCCCEEECCCC-ccCCcChh-hccCcccCCEEECCCC-cC
Confidence 3556665543 699999999887 77653322 257899999999997 46665443 3778999999999998 46
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc------CCCceEEEe
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTT 192 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~l 192 (430)
..+ +.+.+..+++|++|+++++ .+..++.. .+..+++|++|++.+|..++.++ ..+|+.|++
T Consensus 136 ~~~---------~~~~~~~l~~L~~L~L~~N-~l~~~~~~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 136 TVI---------PSGAFEYLSKLRELWLRNN-PIESIPSY--AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203 (452)
T ss_dssp SBC---------CTTTSSSCTTCCEEECCSC-CCCEECTT--TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEEC
T ss_pred Ccc---------ChhhhcccCCCCEEECCCC-CcceeCHh--HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEEC
Confidence 666 5665688999999999986 45566432 26789999999999988887765 468999999
Q ss_pred cCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcc
Q 014145 193 DNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSW 272 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~ 272 (430)
++|.+..+. ....+++|+.|+++++ .++.+.+..+ ..+++|+.|+++++......+..+.
T Consensus 204 ~~n~l~~~~----------------~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~ 263 (452)
T 3zyi_A 204 GMCNIKDMP----------------NLTPLVGLEELEMSGN-HFPEIRPGSF---HGLSSLKKLWVMNSQVSLIERNAFD 263 (452)
T ss_dssp TTSCCSSCC----------------CCTTCTTCCEEECTTS-CCSEECGGGG---TTCTTCCEEECTTSCCCEECTTTTT
T ss_pred CCCcccccc----------------cccccccccEEECcCC-cCcccCcccc---cCccCCCEEEeCCCcCceECHHHhc
Confidence 999887754 3567889999999995 6777766666 7889999999999754444456677
Q ss_pred cCCCCCEEEEccCCCcccccCchhhccccccceEeecccc
Q 014145 273 HLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 273 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 312 (430)
.+++|+.|+++++ .+..++.. .+..+++|++|++++++
T Consensus 264 ~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 264 GLASLVELNLAHN-NLSSLPHD-LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECCSS-CCSCCCTT-SSTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCC-cCCccChH-HhccccCCCEEEccCCC
Confidence 8999999999987 56766653 35678999999998765
No 44
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=1.3e-16 Score=158.10 Aligned_cols=232 Identities=14% Similarity=0.135 Sum_probs=179.8
Q ss_pred chhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCC
Q 014145 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 117 (430)
..+.++|.++. ++++.|+++++. ++.+.... ...+++|+.|+++++ .+..+.+ ..+.++++|++|++++| .
T Consensus 53 ~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~Ls~n-~i~~i~~-~~~~~l~~L~~L~L~~n-~ 123 (440)
T 3zyj_A 53 KNLREVPDGIS--TNTRLLNLHENQ-IQIIKVNS---FKHLRHLEILQLSRN-HIRTIEI-GAFNGLANLNTLELFDN-R 123 (440)
T ss_dssp CCCSSCCSCCC--TTCSEEECCSCC-CCEECTTT---TSSCSSCCEEECCSS-CCCEECG-GGGTTCSSCCEEECCSS-C
T ss_pred CCcCcCCCCCC--CCCcEEEccCCc-CCeeCHHH---hhCCCCCCEEECCCC-cCCccCh-hhccCCccCCEEECCCC-c
Confidence 34666776553 689999999887 77654332 257899999999997 4666444 34788999999999998 5
Q ss_pred ccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc------CCCceEEE
Q 014145 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVT 191 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~ 191 (430)
+..+ +.+.+..+++|++|+++++ .+..++.. .+..+++|++|++.+|..+..++ ..+|+.|+
T Consensus 124 l~~~---------~~~~~~~l~~L~~L~L~~N-~i~~~~~~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 124 LTTI---------PNGAFVYLSKLKELWLRNN-PIESIPSY--AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp CSSC---------CTTTSCSCSSCCEEECCSC-CCCEECTT--TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred CCee---------CHhHhhccccCceeeCCCC-cccccCHH--HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 6665 5555688999999999986 45556432 26789999999999988777665 46899999
Q ss_pred ecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCc
Q 014145 192 TDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS 271 (430)
Q Consensus 192 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l 271 (430)
+++|.+..+. ....+++|++|+++++ .++.+.+..+ ..+++|+.|+++++......+..+
T Consensus 192 L~~n~l~~~~----------------~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~ 251 (440)
T 3zyj_A 192 LAMCNLREIP----------------NLTPLIKLDELDLSGN-HLSAIRPGSF---QGLMHLQKLWMIQSQIQVIERNAF 251 (440)
T ss_dssp CTTSCCSSCC----------------CCTTCSSCCEEECTTS-CCCEECTTTT---TTCTTCCEEECTTCCCCEECTTSS
T ss_pred CCCCcCcccc----------------ccCCCcccCEEECCCC-ccCccChhhh---ccCccCCEEECCCCceeEEChhhh
Confidence 9999887755 3567889999999996 7888777777 889999999999975444445567
Q ss_pred ccCCCCCEEEEccCCCcccccCchhhccccccceEeecccc
Q 014145 272 WHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 272 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 312 (430)
..+++|+.|+++++ .+..++.. .+..+++|+.|++++++
T Consensus 252 ~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 252 DNLQSLVEINLAHN-NLTLLPHD-LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCTTCCEEECTTS-CCCCCCTT-TTSSCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCC-CCCccChh-HhccccCCCEEEcCCCC
Confidence 78999999999996 57666653 35778999999998754
No 45
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=3.7e-16 Score=160.54 Aligned_cols=254 Identities=19% Similarity=0.142 Sum_probs=166.2
Q ss_pred CCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCC
Q 014145 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 130 (430)
.+++.|+++++. ++.++. ...++|+.|++++| ++..+++ .+++|++|++++|. ++.+
T Consensus 40 ~~l~~L~ls~n~-L~~lp~------~l~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N~-l~~l--------- 96 (622)
T 3g06_A 40 NGNAVLNVGESG-LTTLPD------CLPAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGNQ-LTSL--------- 96 (622)
T ss_dssp HCCCEEECCSSC-CSCCCS------CCCTTCSEEEECSC-CCSCCCC-----CCTTCCEEEECSCC-CSCC---------
T ss_pred CCCcEEEecCCC-cCccCh------hhCCCCcEEEecCC-CCCCCCC-----cCCCCCEEEcCCCc-CCcC---------
Confidence 368888888776 665333 23478899999887 4665444 37889999998884 5555
Q ss_pred ccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc--CCCceEEEecCCCCCcccCCCceee
Q 014145 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFL 208 (430)
Q Consensus 131 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~ 208 (430)
|. .+++|++|+++++ .+..++. .+++|++|++.+|. ++.++ +++|+.|++++|.+.++.
T Consensus 97 p~----~l~~L~~L~Ls~N-~l~~l~~------~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N~l~~l~------- 157 (622)
T 3g06_A 97 PV----LPPGLLELSIFSN-PLTHLPA------LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQLASLP------- 157 (622)
T ss_dssp CC----CCTTCCEEEECSC-CCCCCCC------CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCC-------
T ss_pred CC----CCCCCCEEECcCC-cCCCCCC------CCCCcCEEECCCCC-CCcCCCCCCCCCEEECcCCcCCCcC-------
Confidence 33 5688888888875 4555533 46788888888775 66665 478888888888776644
Q ss_pred ecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCc
Q 014145 209 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGL 288 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l 288 (430)
..+++|+.|+++++ .++.++ ..+++|+.|+++++ .+..+|. .+++|+.|++++| .+
T Consensus 158 -----------~~~~~L~~L~L~~N-~l~~l~-------~~~~~L~~L~Ls~N-~l~~l~~---~~~~L~~L~L~~N-~l 213 (622)
T 3g06_A 158 -----------ALPSELCKLWAYNN-QLTSLP-------MLPSGLQELSVSDN-QLASLPT---LPSELYKLWAYNN-RL 213 (622)
T ss_dssp -----------CCCTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CC
T ss_pred -----------CccCCCCEEECCCC-CCCCCc-------ccCCCCcEEECCCC-CCCCCCC---ccchhhEEECcCC-cc
Confidence 23467777777774 455543 34567777777775 3445543 2367777777765 35
Q ss_pred ccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeecc
Q 014145 289 INVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ 368 (430)
Q Consensus 289 ~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~ 368 (430)
..++. .+++|++|+++++ .+..+. ..+++|++|+++++ .++.++. .+++|++|++++
T Consensus 214 ~~l~~-----~~~~L~~L~Ls~N-~L~~lp-----------~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~ 270 (622)
T 3g06_A 214 TSLPA-----LPSGLKELIVSGN-RLTSLP-----------VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYR 270 (622)
T ss_dssp SSCCC-----CCTTCCEEECCSS-CCSCCC-----------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCS
T ss_pred cccCC-----CCCCCCEEEccCC-ccCcCC-----------CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCC
Confidence 44442 2466777777765 333332 12567777777775 5666654 256777777777
Q ss_pred CCCCcccCCCCcCCCCceeeeccccC
Q 014145 369 CPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 369 c~~l~~~~~~~~~~~~L~~l~l~~~~ 394 (430)
| .++.+|..+..+++|+.|++.+++
T Consensus 271 N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 271 N-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp S-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred C-CCCcCCHHHhhccccCEEEecCCC
Confidence 6 555666666677777777775543
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=3.6e-17 Score=154.68 Aligned_cols=107 Identities=17% Similarity=0.247 Sum_probs=75.2
Q ss_pred CCcceeecccccCCe---eeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc-Eeccccc
Q 014145 51 RDIKYLQLGHFPRLQ---EIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE-EVLHLEE 126 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~---~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~ 126 (430)
.+++.|+++++. +. .++... ..+++|++|+++++.++....|.. +..+++|++|++++|. +. .+
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l----~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~-l~~~~----- 117 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSL----ANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTN-VSGAI----- 117 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGG----GGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEEC-CEEEC-----
T ss_pred ceEEEEECCCCC-ccCCcccChhH----hCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCe-eCCcC-----
Confidence 578899998876 54 233322 578899999998644566545544 6788999999999884 44 33
Q ss_pred ccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 127 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 127 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
|..+ ..+++|++|+++++.....+|.. +..+++|++|++.++.
T Consensus 118 ----p~~~-~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 118 ----PDFL-SQIKTLVTLDFSYNALSGTLPPS---ISSLPNLVGITFDGNR 160 (313)
T ss_dssp ----CGGG-GGCTTCCEEECCSSEEESCCCGG---GGGCTTCCEEECCSSC
T ss_pred ----CHHH-hCCCCCCEEeCCCCccCCcCChH---HhcCCCCCeEECcCCc
Confidence 3444 77889999999886443344443 6778888888888875
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=1.4e-16 Score=153.27 Aligned_cols=256 Identities=11% Similarity=0.103 Sum_probs=155.3
Q ss_pred CCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccC
Q 014145 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 157 (430)
Q Consensus 78 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~ 157 (430)
.++|++|+++++ ++..+++. .+.++++|++|++++| .+..+ +...+..+++|++|+++++ .+..++.
T Consensus 51 ~~~L~~L~l~~n-~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~---------~~~~~~~l~~L~~L~Ls~n-~l~~~~~ 117 (353)
T 2z80_A 51 TEAVKSLDLSNN-RITYISNS-DLQRCVNLQALVLTSN-GINTI---------EEDSFSSLGSLEHLDLSYN-YLSNLSS 117 (353)
T ss_dssp CTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECTTS-CCCEE---------CTTTTTTCTTCCEEECCSS-CCSSCCH
T ss_pred cccCcEEECCCC-cCcccCHH-HhccCCCCCEEECCCC-ccCcc---------CHhhcCCCCCCCEEECCCC-cCCcCCH
Confidence 456777777765 34443332 2556777777777776 45554 2333466677777777664 3333322
Q ss_pred CccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCce
Q 014145 158 FTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQ 237 (430)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 237 (430)
. .+..+++|++|++.++. ++.++.. .....+++|++|+++++..++
T Consensus 118 ~--~~~~l~~L~~L~L~~n~-l~~l~~~-------------------------------~~~~~l~~L~~L~l~~n~~~~ 163 (353)
T 2z80_A 118 S--WFKPLSSLTFLNLLGNP-YKTLGET-------------------------------SLFSHLTKLQILRVGNMDTFT 163 (353)
T ss_dssp H--HHTTCTTCSEEECTTCC-CSSSCSS-------------------------------CSCTTCTTCCEEEEEESSSCC
T ss_pred h--HhCCCccCCEEECCCCC-CcccCch-------------------------------hhhccCCCCcEEECCCCcccc
Confidence 1 13445666666665553 2221110 023567888888888876677
Q ss_pred eeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchh
Q 014145 238 HLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQI 317 (430)
Q Consensus 238 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~ 317 (430)
.+....+ ..+++|++|+++++......|..+..+++|++|+++++. +..++.. ....+++|++|+++++. +..+
T Consensus 164 ~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~-~~~~~~~L~~L~L~~n~-l~~~ 237 (353)
T 2z80_A 164 KIQRKDF---AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEI-FVDVTSSVECLELRDTD-LDTF 237 (353)
T ss_dssp EECTTTT---TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHH-HHHHTTTEEEEEEESCB-CTTC
T ss_pred ccCHHHc---cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhh-hhhhcccccEEECCCCc-cccc
Confidence 7666655 778888999998875444456677788889999998864 4554432 34557889999998864 3332
Q ss_pred hcccccccCCcceeecccceEeccCCCCCc-----eeccCCcccCCCCccEEeeccCCCCcccCCCC-cCCCCceeeecc
Q 014145 318 IQLQVGEEAKGCVVFEELGYLGLDCLPSLT-----SFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPT 391 (430)
Q Consensus 318 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~-----~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~l~l~ 391 (430)
.... . ......+.++.++++++ .+. .++. ....+++|++|++++| .++.+|... ..+++|++|++.
T Consensus 238 ~~~~---l-~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~--~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 238 HFSE---L-STGETNSLIKKFTFRNV-KITDESLFQVMK--LLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLH 309 (353)
T ss_dssp CCC----------CCCCCCEEEEESC-BCCHHHHHHHHH--HHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred cccc---c-ccccccchhhccccccc-cccCcchhhhHH--HHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEee
Confidence 2110 0 01112455666666665 222 2222 2235789999999887 666888764 688999999996
Q ss_pred ccC
Q 014145 392 EEE 394 (430)
Q Consensus 392 ~~~ 394 (430)
+++
T Consensus 310 ~N~ 312 (353)
T 2z80_A 310 TNP 312 (353)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.71 E-value=1.1e-15 Score=158.09 Aligned_cols=134 Identities=19% Similarity=0.114 Sum_probs=81.7
Q ss_pred cccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcc
Q 014145 250 FANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGC 329 (430)
Q Consensus 250 l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 329 (430)
+++++.++++.+......+.....++.|+.|+++++.....+.+. .+..+++|++|++++|. +..++. ...
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~-~~~~l~~L~~L~Ls~N~-L~~l~~-------~~f 514 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQ-LEQLSP-------TAF 514 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSC-CCEECT-------TTT
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhcccccccCch-hhhhccccCEEECCCCc-cCCcCh-------HHH
Confidence 334444444443222222333446677888888777555443332 35677888888888874 444321 112
Q ss_pred eeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCC-CCceeeeccccC
Q 014145 330 VVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDA-PKLNKVKPTEEE 394 (430)
Q Consensus 330 ~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~-~~L~~l~l~~~~ 394 (430)
..+++|++|+++++ +++.++.. ....+++|++|+++++.-....|..+..+ ++|+.|++.+++
T Consensus 515 ~~l~~L~~L~Ls~N-~l~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 515 NSLSSLQVLNMSHN-NFFSLDTF-PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TTCTTCCEEECTTS-CCCBCCCG-GGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred cCCCCCCEEECCCC-cCCCCChh-HHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 23788999999886 67777642 23457899999998874443344455555 589999997654
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=1e-15 Score=157.27 Aligned_cols=245 Identities=17% Similarity=0.117 Sum_probs=185.2
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
.+..+|..+. ++|++|+++++. ++.+ |. .+++|++|++++| .+..++. .+++|++|++++| .+
T Consensus 51 ~L~~lp~~l~--~~L~~L~L~~N~-l~~l------p~-~l~~L~~L~Ls~N-~l~~lp~-----~l~~L~~L~Ls~N-~l 113 (622)
T 3g06_A 51 GLTTLPDCLP--AHITTLVIPDNN-LTSL------PA-LPPELRTLEVSGN-QLTSLPV-----LPPGLLELSIFSN-PL 113 (622)
T ss_dssp CCSCCCSCCC--TTCSEEEECSCC-CSCC------CC-CCTTCCEEEECSC-CCSCCCC-----CCTTCCEEEECSC-CC
T ss_pred CcCccChhhC--CCCcEEEecCCC-CCCC------CC-cCCCCCEEEcCCC-cCCcCCC-----CCCCCCEEECcCC-cC
Confidence 4556666554 799999999886 6653 33 5799999999998 4666444 5899999999998 45
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc--CCCceEEEecCCC
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKE 196 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~ 196 (430)
..+ |. .+++|+.|+++++ .+..+|. .+++|++|++.+|. ++.++ +.+|+.|++++|.
T Consensus 114 ~~l---------~~----~l~~L~~L~L~~N-~l~~lp~------~l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~ 172 (622)
T 3g06_A 114 THL---------PA----LPSGLCKLWIFGN-QLTSLPV------LPPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQ 172 (622)
T ss_dssp CCC---------CC----CCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC
T ss_pred CCC---------CC----CCCCcCEEECCCC-CCCcCCC------CCCCCCEEECcCCc-CCCcCCccCCCCEEECCCCC
Confidence 555 23 5689999999986 5666654 35899999999985 66655 6789999999998
Q ss_pred CCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCC
Q 014145 197 PEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLEN 276 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~ 276 (430)
+..+. ..+++|+.|+++++ .++.++ ..+++|+.|+++++ .+..+|. .+++
T Consensus 173 l~~l~------------------~~~~~L~~L~Ls~N-~l~~l~-------~~~~~L~~L~L~~N-~l~~l~~---~~~~ 222 (622)
T 3g06_A 173 LTSLP------------------MLPSGLQELSVSDN-QLASLP-------TLPSELYKLWAYNN-RLTSLPA---LPSG 222 (622)
T ss_dssp CSCCC------------------CCCTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCSS-CCSSCCC---CCTT
T ss_pred CCCCc------------------ccCCCCcEEECCCC-CCCCCC-------CccchhhEEECcCC-cccccCC---CCCC
Confidence 87744 45789999999985 566543 34578999999986 4566654 3578
Q ss_pred CCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCccc
Q 014145 277 LATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYAL 356 (430)
Q Consensus 277 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~ 356 (430)
|+.|++++| .++.++ ..+++|++|+++++ .+..++. .+++|++|++.++ .++.++. ...
T Consensus 223 L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N-~L~~lp~-----------~~~~L~~L~Ls~N-~L~~lp~--~l~ 281 (622)
T 3g06_A 223 LKELIVSGN-RLTSLP-----VLPSELKELMVSGN-RLTSLPM-----------LPSGLLSLSVYRN-QLTRLPE--SLI 281 (622)
T ss_dssp CCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCCC-----------CCTTCCEEECCSS-CCCSCCG--GGG
T ss_pred CCEEEccCC-ccCcCC-----CCCCcCcEEECCCC-CCCcCCc-----------ccccCcEEeCCCC-CCCcCCH--HHh
Confidence 999999986 566655 44688999999887 4555431 3788999999987 6777765 345
Q ss_pred CCCCccEEeeccCCCC
Q 014145 357 EFPSLEHVVVRQCPTM 372 (430)
Q Consensus 357 ~~~~L~~L~l~~c~~l 372 (430)
.+++|+.|++.+++-.
T Consensus 282 ~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 282 HLSSETTVNLEGNPLS 297 (622)
T ss_dssp GSCTTCEEECCSCCCC
T ss_pred hccccCEEEecCCCCC
Confidence 6899999999988643
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=153.33 Aligned_cols=270 Identities=16% Similarity=0.115 Sum_probs=159.8
Q ss_pred chhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCC
Q 014145 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 117 (430)
..++++|.++. ++|++|+++++. ++.+.... ...+++|++|+++++ .+..+.+.. +.++++|++|++++| .
T Consensus 41 ~~l~~iP~~~~--~~L~~L~l~~n~-i~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~ 111 (353)
T 2z80_A 41 GSLNSIPSGLT--EAVKSLDLSNNR-ITYISNSD---LQRCVNLQALVLTSN-GINTIEEDS-FSSLGSLEHLDLSYN-Y 111 (353)
T ss_dssp TTCSSCCTTCC--TTCCEEECTTSC-CCEECTTT---TTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-C
T ss_pred CCccccccccc--ccCcEEECCCCc-CcccCHHH---hccCCCCCEEECCCC-ccCccCHhh-cCCCCCCCEEECCCC-c
Confidence 45667776553 599999999887 77754422 257899999999998 566654433 678999999999998 4
Q ss_pred ccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCC
Q 014145 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEP 197 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~ 197 (430)
+..+ +...+..+++|++|+++++ .+..++... .+..+++|++|++.+|..++..++.
T Consensus 112 l~~~---------~~~~~~~l~~L~~L~L~~n-~l~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~------------ 168 (353)
T 2z80_A 112 LSNL---------SSSWFKPLSSLTFLNLLGN-PYKTLGETS-LFSHLTKLQILRVGNMDTFTKIQRK------------ 168 (353)
T ss_dssp CSSC---------CHHHHTTCTTCSEEECTTC-CCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTT------------
T ss_pred CCcC---------CHhHhCCCccCCEEECCCC-CCcccCchh-hhccCCCCcEEECCCCccccccCHH------------
Confidence 5555 4443478899999999986 555565411 2678999999999998656554321
Q ss_pred CcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCc-ccCCC
Q 014145 198 EKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS-WHLEN 276 (430)
Q Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l-~~l~~ 276 (430)
..+.+++|++|+++++ .++.+.+..+ ..+++|++|+++++. +..++... ..+++
T Consensus 169 --------------------~~~~l~~L~~L~l~~n-~l~~~~~~~l---~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~ 223 (353)
T 2z80_A 169 --------------------DFAGLTFLEELEIDAS-DLQSYEPKSL---KSIQNVSHLILHMKQ-HILLLEIFVDVTSS 223 (353)
T ss_dssp --------------------TTTTCCEEEEEEEEET-TCCEECTTTT---TTCSEEEEEEEECSC-STTHHHHHHHHTTT
T ss_pred --------------------HccCCCCCCEEECCCC-CcCccCHHHH---hccccCCeecCCCCc-cccchhhhhhhccc
Confidence 1234455555555553 3444433333 455556666665543 33333221 23555
Q ss_pred CCEEEEccCCCcccccCch--hhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCc
Q 014145 277 LATLEVSKCHGLINVLTLS--TSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNY 354 (430)
Q Consensus 277 L~~L~l~~c~~l~~l~~~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~ 354 (430)
|+.|+++++. +...+... .....+.++.+++.++..-..-. ...+.....+++|++|+++++ .++.++.+.
T Consensus 224 L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l----~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~- 296 (353)
T 2z80_A 224 VECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESL----FQVMKLLNQISGLLELEFSRN-QLKSVPDGI- 296 (353)
T ss_dssp EEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHH----HHHHHHHHTCTTCCEEECCSS-CCCCCCTTT-
T ss_pred ccEEECCCCc-cccccccccccccccchhhccccccccccCcch----hhhHHHHhcccCCCEEECCCC-CCCccCHHH-
Confidence 6666665542 22221110 11223445566665543211100 000011123677788888776 566665421
Q ss_pred ccCCCCccEEeeccCCC
Q 014145 355 ALEFPSLEHVVVRQCPT 371 (430)
Q Consensus 355 ~~~~~~L~~L~l~~c~~ 371 (430)
...+++|++|++.+++-
T Consensus 297 ~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 297 FDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp TTTCTTCCEEECCSSCB
T ss_pred HhcCCCCCEEEeeCCCc
Confidence 23477888888877643
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.69 E-value=1.6e-16 Score=150.19 Aligned_cols=248 Identities=14% Similarity=0.123 Sum_probs=145.8
Q ss_pred CCcceEEEeCCCCCCc--cCchhHHHhcCCCCEEEEecCCCcc-EecccccccCCccCcCCcCCccceeecCCccccccc
Q 014145 79 NNLRHLVVDDCTNMLS--AIPANLIRCLNNLRWLEVRNCDSLE-EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~--~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~ 155 (430)
.+++.|+++++. +.. ..|.. +..+++|++|+++++..+. .+ |..+ ..+++|++|+++++.....+
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~---------p~~l-~~l~~L~~L~Ls~n~l~~~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSS-LANLPYLNFLYIGGINNLVGPI---------PPAI-AKLTQLHYLYITHTNVSGAI 117 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGG-GGGCTTCSEEEEEEETTEESCC---------CGGG-GGCTTCSEEEEEEECCEEEC
T ss_pred ceEEEEECCCCC-ccCCcccChh-HhCCCCCCeeeCCCCCcccccC---------ChhH-hcCCCCCEEECcCCeeCCcC
Confidence 689999999984 553 34443 7789999999999632343 33 4454 78899999999987544455
Q ss_pred cCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCC
Q 014145 156 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK 235 (430)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 235 (430)
|.. +..+++|++|++.++. ++...| ..++.+++|++|+++++ .
T Consensus 118 p~~---~~~l~~L~~L~Ls~N~-l~~~~p--------------------------------~~~~~l~~L~~L~L~~N-~ 160 (313)
T 1ogq_A 118 PDF---LSQIKTLVTLDFSYNA-LSGTLP--------------------------------PSISSLPNLVGITFDGN-R 160 (313)
T ss_dssp CGG---GGGCTTCCEEECCSSE-EESCCC--------------------------------GGGGGCTTCCEEECCSS-C
T ss_pred CHH---HhCCCCCCEEeCCCCc-cCCcCC--------------------------------hHHhcCCCCCeEECcCC-c
Confidence 443 6788888888888775 331111 12345566666666664 3
Q ss_pred ceeeccCCchhhhhcc-cccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeecccccc
Q 014145 236 VQHLWKENDESNKAFA-NLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMI 314 (430)
Q Consensus 236 l~~~~~~~~~~~~~l~-~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l 314 (430)
++...+..+ ..++ +|+.|+++++.....+|..+..++ |+.|+++++. +...... .+..+++|++|+++++..-
T Consensus 161 l~~~~p~~l---~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 161 ISGAIPDSY---GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM-LEGDASV-LFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp CEEECCGGG---GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE-EEECCGG-GCCTTSCCSEEECCSSEEC
T ss_pred ccCcCCHHH---hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc-ccCcCCH-HHhcCCCCCEEECCCCcee
Confidence 442222222 4444 666676666544335555555554 7777776653 3322221 2455667777777665432
Q ss_pred chhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeeecccc
Q 014145 315 EQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 393 (430)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~ 393 (430)
..+. ....+++|++|+++++.--..++. ....+++|++|+++++.-...+|.. ..+++|+.+++.++
T Consensus 235 ~~~~---------~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 235 FDLG---------KVGLSKNLNGLDLRNNRIYGTLPQ--GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp CBGG---------GCCCCTTCCEEECCSSCCEECCCG--GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSS
T ss_pred eecC---------cccccCCCCEEECcCCcccCcCCh--HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCC
Confidence 1221 112256777777776532223333 2234677777777776444455554 45667777777554
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=4.1e-16 Score=145.29 Aligned_cols=207 Identities=16% Similarity=0.096 Sum_probs=126.1
Q ss_pred CCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccC
Q 014145 50 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 129 (430)
Q Consensus 50 l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 129 (430)
.++|++|+++++. +..+.... ...+++|++|+++++ .+..+.+.. +..+++|++|++++|..+..+
T Consensus 31 ~~~l~~L~l~~n~-i~~~~~~~---~~~~~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~~l~~~-------- 96 (285)
T 1ozn_A 31 PAASQRIFLHGNR-ISHVPAAS---FRACRNLTILWLHSN-VLARIDAAA-FTGLALLEQLDLSDNAQLRSV-------- 96 (285)
T ss_dssp CTTCSEEECTTSC-CCEECTTT---TTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSCTTCCCC--------
T ss_pred CCCceEEEeeCCc-CCccCHHH---cccCCCCCEEECCCC-ccceeCHhh-cCCccCCCEEeCCCCCCcccc--------
Confidence 3567777777665 55543221 145667777777765 344433332 556677777777776545444
Q ss_pred CccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeee
Q 014145 130 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLT 209 (430)
Q Consensus 130 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 209 (430)
+...+..+++|++|+++++. +..++. ..+..+++|++|++.++. +..+.+
T Consensus 97 -~~~~~~~l~~L~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~l~~n~-------------------l~~~~~------- 146 (285)
T 1ozn_A 97 -DPATFHGLGRLHTLHLDRCG-LQELGP--GLFRGLAALQYLYLQDNA-------------------LQALPD------- 146 (285)
T ss_dssp -CTTTTTTCTTCCEEECTTSC-CCCCCT--TTTTTCTTCCEEECCSSC-------------------CCCCCT-------
T ss_pred -CHHHhcCCcCCCEEECCCCc-CCEECH--hHhhCCcCCCEEECCCCc-------------------ccccCH-------
Confidence 22333566677777776653 322311 114455666666665543 222220
Q ss_pred cCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcc
Q 014145 210 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLI 289 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~ 289 (430)
...+.+++|++|+++++ .++.+....+ ..+++|+.|+++++......|..+..+++|+.|+++++ .+.
T Consensus 147 -------~~~~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~ 214 (285)
T 1ozn_A 147 -------DTFRDLGNLTHLFLHGN-RISSVPERAF---RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLS 214 (285)
T ss_dssp -------TTTTTCTTCCEEECCSS-CCCEECTTTT---TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCS
T ss_pred -------hHhccCCCccEEECCCC-cccccCHHHh---cCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCC
Confidence 12356788888888885 6777766555 67888999999887544444667778888999999886 455
Q ss_pred cccCchhhccccccceEeeccccc
Q 014145 290 NVLTLSTSESLVNLGRMKIADCKM 313 (430)
Q Consensus 290 ~l~~~~~~~~l~~L~~L~l~~c~~ 313 (430)
.++.. .+..+++|++|++++++.
T Consensus 215 ~~~~~-~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 215 ALPTE-ALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CCCHH-HHTTCTTCCEEECCSSCE
T ss_pred cCCHH-HcccCcccCEEeccCCCc
Confidence 55432 356788888888887653
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.69 E-value=1.7e-15 Score=150.52 Aligned_cols=155 Identities=20% Similarity=0.212 Sum_probs=85.1
Q ss_pred CCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCC
Q 014145 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
++|++|++++| .+..+ |. +.++++|++|++++| .+..+ |.. .++|++|+++++ .+..++.
T Consensus 131 ~~L~~L~L~~n-~l~~l-p~--~~~l~~L~~L~l~~N-~l~~l---------p~~----~~~L~~L~L~~n-~l~~l~~- 190 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEKL-PE--LQNSSFLKIIDVDNN-SLKKL---------PDL----PPSLEFIAAGNN-QLEELPE- 190 (454)
T ss_dssp TTCCEEECCSS-CCSSC-CC--CTTCTTCCEEECCSS-CCSCC---------CCC----CTTCCEEECCSS-CCSSCCC-
T ss_pred CCCCEEECcCC-CCCCC-cc--cCCCCCCCEEECCCC-cCccc---------CCC----cccccEEECcCC-cCCcCcc-
Confidence 46666666665 34442 22 455666666666666 23333 221 246677777665 3444442
Q ss_pred ccccccCCCccEEEeccCCCccccc--CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCc
Q 014145 159 TENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKV 236 (430)
Q Consensus 159 ~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 236 (430)
+..+++|++|.+.+|. ++.++ +.+|+.|++++|.+..+. ..+.+++|++|+++++ .+
T Consensus 191 ---~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp----------------~~~~l~~L~~L~l~~N-~l 249 (454)
T 1jl5_A 191 ---LQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEELP----------------ELQNLPFLTTIYADNN-LL 249 (454)
T ss_dssp ---CTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSCC----------------CCTTCTTCCEEECCSS-CC
T ss_pred ---ccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCccc----------------ccCCCCCCCEEECCCC-cC
Confidence 5567777777777664 44443 456777777777655433 2455666777777664 34
Q ss_pred eeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccC
Q 014145 237 QHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKC 285 (430)
Q Consensus 237 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c 285 (430)
+.++ ..+++|+.|+++++. +..+|.. +++|+.|++++|
T Consensus 250 ~~l~-------~~~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~N 287 (454)
T 1jl5_A 250 KTLP-------DLPPSLEALNVRDNY-LTDLPEL---PQSLTFLDVSEN 287 (454)
T ss_dssp SSCC-------SCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS
T ss_pred Cccc-------ccccccCEEECCCCc-ccccCcc---cCcCCEEECcCC
Confidence 4332 223566666666642 3334432 255666666654
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=4.7e-17 Score=154.19 Aligned_cols=112 Identities=18% Similarity=0.275 Sum_probs=61.3
Q ss_pred cchhhhhhhcc-cCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecC
Q 014145 37 NSTIQKCYEEM-IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 37 ~~~~~~l~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 115 (430)
+..+.+.+..+ ..+++|++|+++++. ++.+.... ...+++|++|++++|. +...++ +..+++|++|++++|
T Consensus 19 ~~~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~Ls~n~-l~~~~~---~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 19 DSSLKQALASLRQSAWNVKELDLSGNP-LSQISAAD---LAPFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNN 90 (317)
T ss_dssp TTTHHHHHHHHHTTGGGCSEEECTTSC-CCCCCHHH---HTTCTTCCEEECTTSC-CEEEEE---ETTCTTCCEEECCSS
T ss_pred ccchhhhHHHHhccCCCCCEEECcCCc-cCcCCHHH---hhCCCcCCEEECCCCc-CCcchh---hhhcCCCCEEECcCC
Confidence 34444444443 245577777777665 55432111 1456777777777763 433333 456777777777776
Q ss_pred CCccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 116 DSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 116 ~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
.+..+ ...++|++|+++++ .+..++. ..+++|++|++.++.
T Consensus 91 -~l~~l--------------~~~~~L~~L~l~~n-~l~~~~~-----~~~~~L~~L~l~~N~ 131 (317)
T 3o53_A 91 -YVQEL--------------LVGPSIETLHAANN-NISRVSC-----SRGQGKKNIYLANNK 131 (317)
T ss_dssp -EEEEE--------------EECTTCCEEECCSS-CCSEEEE-----CCCSSCEEEECCSSC
T ss_pred -ccccc--------------cCCCCcCEEECCCC-ccCCcCc-----cccCCCCEEECCCCC
Confidence 34444 22367777777764 3333322 235566666666654
No 55
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.68 E-value=3.1e-15 Score=154.64 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=51.0
Q ss_pred ccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCC
Q 014145 298 ESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ 377 (430)
Q Consensus 298 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 377 (430)
..++.|+.|+++++.....+.. .....+++|++|+++++ .++.+... ....+++|++|+++++ +++.++.
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~-------~~~~~l~~L~~L~Ls~N-~L~~l~~~-~f~~l~~L~~L~Ls~N-~l~~l~~ 535 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLP-------DIFTELRNLTFLDLSQC-QLEQLSPT-AFNSLSSLQVLNMSHN-NFFSLDT 535 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEEC-------SCCTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECTTS-CCCBCCC
T ss_pred ccchhhhhhhhhhcccccccCc-------hhhhhccccCEEECCCC-ccCCcChH-HHcCCCCCCEEECCCC-cCCCCCh
Confidence 3445566666655543332211 11223677888888876 66666542 2335778888888776 4555543
Q ss_pred -CCcCCCCceeeeccccC
Q 014145 378 -GVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 378 -~~~~~~~L~~l~l~~~~ 394 (430)
.+..+++|+.|++.++.
T Consensus 536 ~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 536 FPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp GGGTTCTTCCEEECTTSC
T ss_pred hHHhCCCCCCEEECCCCc
Confidence 34567788888886643
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=4.9e-15 Score=147.33 Aligned_cols=178 Identities=22% Similarity=0.235 Sum_probs=84.0
Q ss_pred CCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCC
Q 014145 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
++++.|+++++ ++..+.+.. +.++++|++|++++| .+..+ +...+..+++|++|+++++ .+..++..
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~Ls~n-~i~~~---------~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 141 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQADT-FRHLHHLEVLQLGRN-SIRQI---------EVGAFNGLASLNTLELFDN-WLTVIPSG 141 (452)
T ss_dssp TTCSEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEE---------CTTTTTTCTTCCEEECCSS-CCSBCCTT
T ss_pred CCccEEECcCC-cCceECHHH-cCCCCCCCEEECCCC-ccCCc---------ChhhccCcccCCEEECCCC-cCCccChh
Confidence 45566666554 334333322 445556666666555 34443 2223355555666665553 33333221
Q ss_pred ccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCcee
Q 014145 159 TENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQH 238 (430)
Q Consensus 159 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 238 (430)
.+..+++|++|++.++. ++.+++ .....+++|++|++++++.++.
T Consensus 142 --~~~~l~~L~~L~L~~N~-l~~~~~--------------------------------~~~~~l~~L~~L~l~~~~~l~~ 186 (452)
T 3zyi_A 142 --AFEYLSKLRELWLRNNP-IESIPS--------------------------------YAFNRVPSLMRLDLGELKKLEY 186 (452)
T ss_dssp --TSSSCTTCCEEECCSCC-CCEECT--------------------------------TTTTTCTTCCEEECCCCTTCCE
T ss_pred --hhcccCCCCEEECCCCC-cceeCH--------------------------------hHHhcCCcccEEeCCCCCCccc
Confidence 13345555555555443 322221 1123455566666655555555
Q ss_pred eccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccc
Q 014145 239 LWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 239 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c 311 (430)
+....+ ..+++|+.|+++++ .+..+| .+..+++|++|+++++. +..++.. .+..+++|++|+++++
T Consensus 187 i~~~~~---~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 187 ISEGAF---EGLFNLKYLNLGMC-NIKDMP-NLTPLVGLEELEMSGNH-FPEIRPG-SFHGLSSLKKLWVMNS 252 (452)
T ss_dssp ECTTTT---TTCTTCCEEECTTS-CCSSCC-CCTTCTTCCEEECTTSC-CSEECGG-GGTTCTTCCEEECTTS
T ss_pred cChhhc---cCCCCCCEEECCCC-cccccc-cccccccccEEECcCCc-CcccCcc-cccCccCCCEEEeCCC
Confidence 544444 45555666665554 233333 24455555555555542 3333221 2344555555555544
No 57
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.67 E-value=6.4e-15 Score=146.37 Aligned_cols=291 Identities=15% Similarity=0.130 Sum_probs=146.6
Q ss_pred CCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCC
Q 014145 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
++|+.|+++++ .+..+ |. .+++|++|++++| .+..+ + ...++|++|+++++ .+..+|.
T Consensus 91 ~~L~~L~l~~n-~l~~l-p~----~~~~L~~L~l~~n-~l~~l---------~----~~~~~L~~L~L~~n-~l~~lp~- 148 (454)
T 1jl5_A 91 PHLESLVASCN-SLTEL-PE----LPQSLKSLLVDNN-NLKAL---------S----DLPPLLEYLGVSNN-QLEKLPE- 148 (454)
T ss_dssp TTCSEEECCSS-CCSSC-CC----CCTTCCEEECCSS-CCSCC---------C----SCCTTCCEEECCSS-CCSSCCC-
T ss_pred CCCCEEEccCC-cCCcc-cc----ccCCCcEEECCCC-ccCcc---------c----CCCCCCCEEECcCC-CCCCCcc-
Confidence 46666666654 33432 22 1356666666665 33333 1 11257888888875 4555652
Q ss_pred ccccccCCCccEEEeccCCCccccc--CCCceEEEecCCCCCcccC---CCceeeecCccccccc-CCCCCCCCEEeccc
Q 014145 159 TENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTS---EENFFLTDQIQPLFDE-KVAFPQLRYLELSR 232 (430)
Q Consensus 159 ~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~~~~~~~---~~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~ 232 (430)
+..+++|++|++.++. ++.++ +.+|+.|++++|.+.++.. ++++..++-...-+.. ....++|++|++++
T Consensus 149 ---~~~l~~L~~L~l~~N~-l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~ 224 (454)
T 1jl5_A 149 ---LQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGN 224 (454)
T ss_dssp ---CTTCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCS
T ss_pred ---cCCCCCCCEEECCCCc-CcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcC
Confidence 6778888888888775 65554 4578888888887665432 2222211100000000 11234677777776
Q ss_pred CCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeecccc
Q 014145 233 LHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 233 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 312 (430)
+ .++.++ .+ ..+++|+.|+++++ .+..+|. .+++|+.|++++|. +..++. .+++|++|+++++.
T Consensus 225 n-~l~~lp--~~---~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N~-l~~l~~-----~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 225 N-ILEELP--EL---QNLPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDNY-LTDLPE-----LPQSLTFLDVSENI 288 (454)
T ss_dssp S-CCSSCC--CC---TTCTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSSC
T ss_pred C-cCCccc--cc---CCCCCCCEEECCCC-cCCcccc---cccccCEEECCCCc-ccccCc-----ccCcCCEEECcCCc
Confidence 5 444443 13 56677777777775 3444443 23677777777653 444432 23677788877753
Q ss_pred ccchhhccc--cc------ccCCcceee-cccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCC
Q 014145 313 MIEQIIQLQ--VG------EEAKGCVVF-EELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAP 383 (430)
Q Consensus 313 ~l~~~~~~~--~~------~~~~~~~~~-~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 383 (430)
+..+.... .. ..-.....+ ++|++|+++++ .++.++. .+++|++|++++| .++.+|. .++
T Consensus 289 -l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~L~~N-~l~~lp~---~l~ 357 (454)
T 1jl5_A 289 -FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPA-----LPPRLERLIASFN-HLAEVPE---LPQ 357 (454)
T ss_dssp -CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCCCC---CCT
T ss_pred -cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-ccccccc-----cCCcCCEEECCCC-ccccccc---hhh
Confidence 22221000 00 000000011 35666666664 4444432 2578999999887 5667776 478
Q ss_pred CceeeeccccCCCC--CcccccCch------------hHHHHHHHHHhhcccc
Q 014145 384 KLNKVKPTEEEDGD--DEGCWEGNL------------NDTIKKLFNEMNSKEK 422 (430)
Q Consensus 384 ~L~~l~l~~~~~~~--~~~~~~~~~------------~~~l~~~~~~~~~~~~ 422 (430)
+|+++++.++.... ....+-... ..+++.+..+.+.+..
T Consensus 358 ~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 358 NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp TCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred hccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 99999997754222 111111111 1467777777777664
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=6.1e-15 Score=146.09 Aligned_cols=181 Identities=20% Similarity=0.252 Sum_probs=93.9
Q ss_pred CCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccc
Q 014145 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~ 155 (430)
...++++.|+++++ ++..+.+.. +.++++|++|++++| .+..+ +.+.+..+++|++|+++++ .+..+
T Consensus 61 ~~~~~l~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~Ls~n-~i~~i---------~~~~~~~l~~L~~L~L~~n-~l~~~ 127 (440)
T 3zyj_A 61 GISTNTRLLNLHEN-QIQIIKVNS-FKHLRHLEILQLSRN-HIRTI---------EIGAFNGLANLNTLELFDN-RLTTI 127 (440)
T ss_dssp CCCTTCSEEECCSC-CCCEECTTT-TSSCSSCCEEECCSS-CCCEE---------CGGGGTTCSSCCEEECCSS-CCSSC
T ss_pred CCCCCCcEEEccCC-cCCeeCHHH-hhCCCCCCEEECCCC-cCCcc---------ChhhccCCccCCEEECCCC-cCCee
Confidence 33467777777776 345443333 567777888887777 35555 3333466777777777775 45445
Q ss_pred cCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCC
Q 014145 156 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK 235 (430)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 235 (430)
+.. .+..+++|++|++.++. ++.+++ .....+++|++|++++++.
T Consensus 128 ~~~--~~~~l~~L~~L~L~~N~-i~~~~~--------------------------------~~~~~l~~L~~L~l~~~~~ 172 (440)
T 3zyj_A 128 PNG--AFVYLSKLKELWLRNNP-IESIPS--------------------------------YAFNRIPSLRRLDLGELKR 172 (440)
T ss_dssp CTT--TSCSCSSCCEEECCSCC-CCEECT--------------------------------TTTTTCTTCCEEECCCCTT
T ss_pred CHh--HhhccccCceeeCCCCc-ccccCH--------------------------------HHhhhCcccCEeCCCCCCC
Confidence 332 14566777777776654 443321 0123344555555555444
Q ss_pred ceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccc
Q 014145 236 VQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 236 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c 311 (430)
+..+....+ ..+++|+.|+++++ .+..+| .+..+++|++|+++++ .+..++.. .+..+++|++|+++++
T Consensus 173 l~~i~~~~~---~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 173 LSYISEGAF---EGLSNLRYLNLAMC-NLREIP-NLTPLIKLDELDLSGN-HLSAIRPG-SFQGLMHLQKLWMIQS 241 (440)
T ss_dssp CCEECTTTT---TTCSSCCEEECTTS-CCSSCC-CCTTCSSCCEEECTTS-CCCEECTT-TTTTCTTCCEEECTTC
T ss_pred cceeCcchh---hcccccCeecCCCC-cCcccc-ccCCCcccCEEECCCC-ccCccChh-hhccCccCCEEECCCC
Confidence 444443333 44455555555553 233333 2334445555555544 23333221 2334445555555443
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.65 E-value=3.4e-15 Score=140.46 Aligned_cols=214 Identities=17% Similarity=0.176 Sum_probs=121.5
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccC--chhHHHhcCCCCEEEEecCC
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAI--PANLIRCLNNLRWLEVRNCD 116 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L~~L~l~~~~ 116 (430)
.++++|.++ .++|++|+++++. ++.++... ...+++|++|+++++. +.... +.. +..+++|++|++++|.
T Consensus 18 ~l~~ip~~~--~~~l~~L~L~~n~-l~~i~~~~---~~~l~~L~~L~L~~n~-l~~~~~~~~~-~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 18 GLTSVPTGI--PSSATRLELESNK-LQSLPHGV---FDKLTQLTKLSLSSNG-LSFKGCCSQS-DFGTTSLKYLDLSFNG 89 (306)
T ss_dssp CCSSCCSCC--CTTCCEEECCSSC-CCCCCTTT---TTTCTTCSEEECCSSC-CCEEEEEEHH-HHSCSCCCEEECCSCS
T ss_pred CcccCCCCC--CCCCCEEECCCCc-cCccCHhH---hhccccCCEEECCCCc-cCcccCcccc-cccccccCEEECCCCc
Confidence 355566543 3689999999876 66544322 1468899999999873 44321 233 5568999999999984
Q ss_pred CccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCC
Q 014145 117 SLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKE 196 (430)
Q Consensus 117 ~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~ 196 (430)
+..+ |..+ ..+++|++|+++++ .+..++... .+..+++|++|++.+|. ++...+
T Consensus 90 -i~~l---------~~~~-~~l~~L~~L~l~~n-~l~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~------------ 143 (306)
T 2z66_A 90 -VITM---------SSNF-LGLEQLEHLDFQHS-NLKQMSEFS-VFLSLRNLIYLDISHTH-TRVAFN------------ 143 (306)
T ss_dssp -EEEE---------EEEE-ETCTTCCEEECTTS-EEESSTTTT-TTTTCTTCCEEECTTSC-CEECST------------
T ss_pred -cccC---------hhhc-CCCCCCCEEECCCC-cccccccch-hhhhccCCCEEECCCCc-CCccch------------
Confidence 5555 3443 67889999999885 444443211 15677888888888775 332211
Q ss_pred CCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCcee-eccCCchhhhhcccccEEEeecCCCcccccCCcccCC
Q 014145 197 PEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQH-LWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLE 275 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~ 275 (430)
.....+++|++|+++++ .+.. ..+..+ ..+++|+.|+++++......+..+..++
T Consensus 144 --------------------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 199 (306)
T 2z66_A 144 --------------------GIFNGLSSLEVLKMAGN-SFQENFLPDIF---TELRNLTFLDLSQCQLEQLSPTAFNSLS 199 (306)
T ss_dssp --------------------TTTTTCTTCCEEECTTC-EEGGGEECSCC---TTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred --------------------hhcccCcCCCEEECCCC-ccccccchhHH---hhCcCCCEEECCCCCcCCcCHHHhcCCC
Confidence 11234455555555553 2221 122233 4455566666655432222234444555
Q ss_pred CCCEEEEccCCCcccccCchhhccccccceEeecccc
Q 014145 276 NLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 276 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 312 (430)
+|++|+++++. +..++.. .+..+++|++|+++++.
T Consensus 200 ~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 200 SLQVLNMSHNN-FFSLDTF-PYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp TCCEEECTTSC-CSBCCSG-GGTTCTTCCEEECTTSC
T ss_pred CCCEEECCCCc-cCccChh-hccCcccCCEeECCCCC
Confidence 66666665542 3333322 13445566666665553
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.64 E-value=2.6e-16 Score=149.06 Aligned_cols=243 Identities=13% Similarity=0.066 Sum_probs=155.0
Q ss_pred CCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCcccccccc
Q 014145 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 77 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
.+++|+.|+++++ ++...++. .+..+++|++|++++|. +... +. +..+++|++|+++++ .+..++
T Consensus 32 ~~~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~---------~~--~~~l~~L~~L~Ls~n-~l~~l~ 96 (317)
T 3o53_A 32 SAWNVKELDLSGN-PLSQISAA-DLAPFTKLELLNLSSNV-LYET---------LD--LESLSTLRTLDLNNN-YVQELL 96 (317)
T ss_dssp TGGGCSEEECTTS-CCCCCCHH-HHTTCTTCCEEECTTSC-CEEE---------EE--ETTCTTCCEEECCSS-EEEEEE
T ss_pred cCCCCCEEECcCC-ccCcCCHH-HhhCCCcCCEEECCCCc-CCcc---------hh--hhhcCCCCEEECcCC-cccccc
Confidence 4678999999997 46664443 47889999999999984 5544 12 377889999999986 344442
Q ss_pred CCccccccCCCccEEEeccCCCccccc---CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccC
Q 014145 157 NFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRL 233 (430)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 233 (430)
..++|++|.+.++. ++..+ .++|+.|++++|.+..+.+ ...+.+++|+.|+++++
T Consensus 97 -------~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~--------------~~~~~l~~L~~L~Ls~N 154 (317)
T 3o53_A 97 -------VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRD--------------LDEGCRSRVQYLDLKLN 154 (317)
T ss_dssp -------ECTTCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGGG--------------BCTGGGSSEEEEECTTS
T ss_pred -------CCCCcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCccc--------------hhhhccCCCCEEECCCC
Confidence 34788888888875 55443 4567888888887665431 12345678888888875
Q ss_pred CCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccc
Q 014145 234 HKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKM 313 (430)
Q Consensus 234 ~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~ 313 (430)
.++.+....+. ..+++|+.|+++++. +..++. ...+++|++|+++++ .+..++.. +..+++|++|+++++.
T Consensus 155 -~l~~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N~- 225 (317)
T 3o53_A 155 -EIDTVNFAELA--ASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNNK- 225 (317)
T ss_dssp -CCCEEEGGGGG--GGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTSC-
T ss_pred -CCCcccHHHHh--hccCcCCEEECCCCc-Cccccc-ccccccCCEEECCCC-cCCcchhh--hcccCcccEEECcCCc-
Confidence 55554433321 356788888888763 454443 234777888888775 45555442 5567778888887763
Q ss_pred cchhhcccccccCCcceeecccceEeccCCCCC-ceeccCCcccCCCCccEEeeccCCCCccc
Q 014145 314 IEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSL-TSFCLGNYALEFPSLEHVVVRQCPTMKIF 375 (430)
Q Consensus 314 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L-~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 375 (430)
+..++ .....+++|+.|++.+++-- ..++. ....+++|+.+++.++..++..
T Consensus 226 l~~l~--------~~~~~l~~L~~L~l~~N~~~~~~~~~--~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 226 LVLIE--------KALRFSQNLEHFDLRGNGFHCGTLRD--FFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CCEEC--------TTCCCCTTCCEEECTTCCCBHHHHHH--HHHTCHHHHHHHHHHHHHHHSS
T ss_pred ccchh--------hHhhcCCCCCEEEccCCCccCcCHHH--HHhccccceEEECCCchhccCC
Confidence 33332 12223677777777776543 12221 2234677777777766665443
No 61
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=4.3e-15 Score=142.65 Aligned_cols=230 Identities=20% Similarity=0.210 Sum_probs=175.2
Q ss_pred chhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCC
Q 014145 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 117 (430)
+.++++|.++ ++++++|+++++. ++.++.+. + ..+++|++|+++++. +.+.++.+.+.++++|.++.+.++..
T Consensus 19 ~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~-f--~~l~~L~~L~Ls~N~-i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 19 SKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGA-F--SGFGDLEKIEISQND-VLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TTCCSCCTTC--CTTCSEEEEESCC-CSEECTTS-S--TTCTTCCEEEEECCT-TCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CCCCccCcCc--CCCCCEEEccCCc-CCCcCHHH-H--cCCCCCCEEECcCCC-CCCccChhHhhcchhhhhhhcccCCc
Confidence 3466777665 4689999999877 88876543 2 568999999999985 33434544567888888877666667
Q ss_pred ccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccC-------CCceEE
Q 014145 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFIS-------NSVVHV 190 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-------~~L~~L 190 (430)
+..+ +.+.+..+++|++|+++++ .+..++... .....++..+.+.++..++.++. ..++.|
T Consensus 92 l~~l---------~~~~f~~l~~L~~L~l~~n-~l~~~~~~~--~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L 159 (350)
T 4ay9_X 92 LLYI---------NPEAFQNLPNLQYLLISNT-GIKHLPDVH--KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 159 (350)
T ss_dssp CCEE---------CTTSBCCCTTCCEEEEEEE-CCSSCCCCT--TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred cccc---------Cchhhhhcccccccccccc-ccccCCchh--hcccchhhhhhhccccccccccccchhhcchhhhhh
Confidence 8887 5666789999999999986 455554321 34556788888888877776652 357889
Q ss_pred EecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCC
Q 014145 191 TTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP 270 (430)
Q Consensus 191 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 270 (430)
++++|.+.++. ......++|++|.+.+++.++.++...+ ..+++|+.|+++++ .++.+|..
T Consensus 160 ~L~~N~i~~i~---------------~~~f~~~~L~~l~l~~~n~l~~i~~~~f---~~l~~L~~LdLs~N-~l~~lp~~ 220 (350)
T 4ay9_X 160 WLNKNGIQEIH---------------NSAFNGTQLDELNLSDNNNLEELPNDVF---HGASGPVILDISRT-RIHSLPSY 220 (350)
T ss_dssp ECCSSCCCEEC---------------TTSSTTEEEEEEECTTCTTCCCCCTTTT---TTEECCSEEECTTS-CCCCCCSS
T ss_pred ccccccccCCC---------------hhhccccchhHHhhccCCcccCCCHHHh---ccCcccchhhcCCC-CcCccChh
Confidence 99999888765 2233456899999998888999887777 88999999999986 67888753
Q ss_pred cccCCCCCEEEEccCCCcccccCchhhccccccceEeecc
Q 014145 271 SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIAD 310 (430)
Q Consensus 271 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~ 310 (430)
.+.+|++|.+.++..++.+|. +..+++|+.+++.+
T Consensus 221 --~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 --GLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp --SCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred --hhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 477899999999999999885 67889999999864
No 62
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=1.1e-14 Score=132.05 Aligned_cols=202 Identities=16% Similarity=0.119 Sum_probs=130.1
Q ss_pred CCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCC
Q 014145 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 130 (430)
++|++|+++++. ++.++... ...+++|++|+++++..+..+++.. +.++++|++|++++|..++.+
T Consensus 31 ~~l~~L~l~~n~-l~~i~~~~---~~~l~~L~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~l~~~n~l~~i--------- 96 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRTIPSHA---FSNLPNISRIYVSIDVTLQQLESHS-FYNLSKVTHIEIRNTRNLTYI--------- 96 (239)
T ss_dssp TTCCEEEEESCC-CSEECTTT---TTTCTTCCEEEEECCSSCCEECTTT-EESCTTCCEEEEEEETTCCEE---------
T ss_pred CcccEEEEeCCc-ceEECHHH---ccCCCCCcEEeCCCCCCcceeCHhH-cCCCcCCcEEECCCCCCeeEc---------
Confidence 378888888776 77654432 1467888888888874455544432 567888888888884467776
Q ss_pred ccCcCCcCCccceeecCCccccccccCCccccccCCCcc---EEEeccCCCcccccCCCceEEEecCCCCCcccCCCcee
Q 014145 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELR---YLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFF 207 (430)
Q Consensus 131 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~---~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 207 (430)
+...+..+++|++|+++++ .+..+|. ...+++|+ +|++.+++.++.+++.
T Consensus 97 ~~~~f~~l~~L~~L~l~~n-~l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~~---------------------- 149 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNT-GLKMFPD----LTKVYSTDIFFILEITDNPYMTSIPVN---------------------- 149 (239)
T ss_dssp CTTSEECCTTCCEEEEEEE-CCCSCCC----CTTCCBCCSEEEEEEESCTTCCEECTT----------------------
T ss_pred CHHHhCCCCCCCEEeCCCC-CCccccc----cccccccccccEEECCCCcchhhcCcc----------------------
Confidence 4444577888888888875 3444543 34455555 7777766445443321
Q ss_pred eecCcccccccCCCCCCCC-EEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccC-CcccC-CCCCEEEEcc
Q 014145 208 LTDQIQPLFDEKVAFPQLR-YLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHL-ENLATLEVSK 284 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~l~~l-~~L~~L~l~~ 284 (430)
....+++|+ +|+++++ +++.++...+ .. ++|+.|+++++..++.++. .+..+ ++|+.|++++
T Consensus 150 ----------~~~~l~~L~~~L~l~~n-~l~~i~~~~~---~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 150 ----------AFQGLCNETLTLKLYNN-GFTSVQGYAF---NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp ----------TTTTTBSSEEEEECCSC-CCCEECTTTT---TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred ----------cccchhcceeEEEcCCC-CCcccCHhhc---CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 134567777 8888774 5666655544 33 6788888887654666643 34566 7888888887
Q ss_pred CCCcccccCchhhccccccceEeeccccc
Q 014145 285 CHGLINVLTLSTSESLVNLGRMKIADCKM 313 (430)
Q Consensus 285 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~ 313 (430)
+ .+..++. ..+++|+.|++.++..
T Consensus 215 N-~l~~l~~----~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 215 T-SVTALPS----KGLEHLKELIARNTWT 238 (239)
T ss_dssp C-CCCCCCC----TTCTTCSEEECTTC--
T ss_pred C-ccccCCh----hHhccCceeeccCccC
Confidence 4 4666653 2567788888877653
No 63
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=1.8e-14 Score=130.58 Aligned_cols=180 Identities=13% Similarity=0.112 Sum_probs=114.9
Q ss_pred CCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCC
Q 014145 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
++|+.|+++++ ++..+++ ..+.++++|++|++++|..++.+ +...+..+++|++|++++|..+..++..
T Consensus 31 ~~l~~L~l~~n-~l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i---------~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPS-HAFSNLPNISRIYVSIDVTLQQL---------ESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp TTCCEEEEESC-CCSEECT-TTTTTCTTCCEEEEECCSSCCEE---------CTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred CcccEEEEeCC-cceEECH-HHccCCCCCcEEeCCCCCCccee---------CHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 47888888886 4555444 23667888888888888657666 4444567788888888875566666432
Q ss_pred ccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCC---EEecccCCC
Q 014145 159 TENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLR---YLELSRLHK 235 (430)
Q Consensus 159 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~~~ 235 (430)
.+..+++|++|++.++. ++.++ ....+++|+ .|+++++..
T Consensus 100 --~f~~l~~L~~L~l~~n~-l~~lp----------------------------------~~~~l~~L~~L~~L~l~~N~~ 142 (239)
T 2xwt_C 100 --ALKELPLLKFLGIFNTG-LKMFP----------------------------------DLTKVYSTDIFFILEITDNPY 142 (239)
T ss_dssp --SEECCTTCCEEEEEEEC-CCSCC----------------------------------CCTTCCBCCSEEEEEEESCTT
T ss_pred --HhCCCCCCCEEeCCCCC-Ccccc----------------------------------ccccccccccccEEECCCCcc
Confidence 14567777777777664 33211 123445555 888887657
Q ss_pred ceeeccCCchhhhhccccc-EEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccc-cccceEeeccc
Q 014145 236 VQHLWKENDESNKAFANLI-RLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESL-VNLGRMKIADC 311 (430)
Q Consensus 236 l~~~~~~~~~~~~~l~~L~-~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l-~~L~~L~l~~c 311 (430)
++.+....+ ..+++|+ .|+++++ .+..+|......++|++|++++++.++.++.. .+..+ ++|++|+++++
T Consensus 143 l~~i~~~~~---~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~-~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 143 MTSIPVNAF---QGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKD-AFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp CCEECTTTT---TTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTT-TTTTCSBCCSEEECTTC
T ss_pred hhhcCcccc---cchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHH-HhhccccCCcEEECCCC
Confidence 777766655 6777888 8888775 34566654433367777777776556655443 23445 66667766653
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.60 E-value=2.7e-14 Score=134.35 Aligned_cols=183 Identities=17% Similarity=0.171 Sum_probs=107.4
Q ss_pred CCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCcccccccc
Q 014145 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 77 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
..++|+.|+++++ ++.. .+...+.++++|++|++++|. +..+.. .+..+ ..+++|++|+++++ .+..++
T Consensus 26 ~~~~l~~L~L~~n-~l~~-i~~~~~~~l~~L~~L~L~~n~-l~~~~~------~~~~~-~~~~~L~~L~Ls~n-~i~~l~ 94 (306)
T 2z66_A 26 IPSSATRLELESN-KLQS-LPHGVFDKLTQLTKLSLSSNG-LSFKGC------CSQSD-FGTTSLKYLDLSFN-GVITMS 94 (306)
T ss_dssp CCTTCCEEECCSS-CCCC-CCTTTTTTCTTCSEEECCSSC-CCEEEE------EEHHH-HSCSCCCEEECCSC-SEEEEE
T ss_pred CCCCCCEEECCCC-ccCc-cCHhHhhccccCCEEECCCCc-cCcccC------ccccc-ccccccCEEECCCC-ccccCh
Confidence 3467888888876 3554 343445678888888888773 433210 01121 34677777777775 344443
Q ss_pred CCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCc
Q 014145 157 NFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKV 236 (430)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 236 (430)
.. +..+++|++|++.++. ++..++ +.....+++|++|+++++ .+
T Consensus 95 ~~---~~~l~~L~~L~l~~n~-l~~~~~-------------------------------~~~~~~l~~L~~L~l~~n-~l 138 (306)
T 2z66_A 95 SN---FLGLEQLEHLDFQHSN-LKQMSE-------------------------------FSVFLSLRNLIYLDISHT-HT 138 (306)
T ss_dssp EE---EETCTTCCEEECTTSE-EESSTT-------------------------------TTTTTTCTTCCEEECTTS-CC
T ss_pred hh---cCCCCCCCEEECCCCc-cccccc-------------------------------chhhhhccCCCEEECCCC-cC
Confidence 32 4556666666666553 222111 012356778888888875 45
Q ss_pred eeeccCCchhhhhcccccEEEeecCCCcc-cccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccc
Q 014145 237 QHLWKENDESNKAFANLIRLKISECSKLQ-KLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 237 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c 311 (430)
.......+ ..+++|++|+++++.... .+|..+..+++|++|++++|. +..++.. .+..+++|++|+++++
T Consensus 139 ~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~N 209 (306)
T 2z66_A 139 RVAFNGIF---NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPT-AFNSLSSLQVLNMSHN 209 (306)
T ss_dssp EECSTTTT---TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECTTS
T ss_pred Cccchhhc---ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHH-HhcCCCCCCEEECCCC
Confidence 55544444 667788888888764433 356666677778888887763 4444322 2455666777777665
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=4.4e-17 Score=167.53 Aligned_cols=149 Identities=17% Similarity=0.289 Sum_probs=92.6
Q ss_pred ecccccchhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEE
Q 014145 32 WEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLE 111 (430)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 111 (430)
|++.....+..++ ..+++|++|+++++. +.+..... +. ..+++|+.|++++|..+.......+..++++|++|+
T Consensus 89 ~~~~~~~~l~~l~---~~~~~L~~L~L~~~~-~~~~~~~~-l~-~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~ 162 (594)
T 2p1m_B 89 WGGYVYPWIEAMS---SSYTWLEEIRLKRMV-VTDDCLEL-IA-KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELD 162 (594)
T ss_dssp SCCBCHHHHHHHH---HHCTTCCEEEEESCB-CCHHHHHH-HH-HHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEE
T ss_pred ccchhhHHHHHHH---HhCCCCCeEEeeCcE-EcHHHHHH-HH-HhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEe
Confidence 5555544444444 357899999999876 44311111 00 247899999999986555432334466899999999
Q ss_pred EecCCCccEecccccccCCccCcCCcCCccceeecCCcc-ccc--cccCCccccccCCCccEEEeccCCCccccc-----
Q 014145 112 VRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLP-KLK--RFCNFTENIIEMPELRYLAIENCPDMETFI----- 183 (430)
Q Consensus 112 l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~-~l~--~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----- 183 (430)
+++|. +... +.... ..+...+++|++|+++++. .+. .+.. ....+++|++|++.+|..++.++
T Consensus 163 L~~~~-i~~~----~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~l~~---l~~~~~~L~~L~L~~~~~~~~l~~~~~~ 233 (594)
T 2p1m_B 163 LRESD-VDDV----SGHWL-SHFPDTYTSLVSLNISCLASEVSFSALER---LVTRCPNLKSLKLNRAVPLEKLATLLQR 233 (594)
T ss_dssp CTTCE-EECC----CGGGG-GGSCTTCCCCCEEECTTCCSCCCHHHHHH---HHHHCTTCCEEECCTTSCHHHHHHHHHH
T ss_pred CcCCc-cCCc----chHHH-HHHhhcCCcCcEEEecccCCcCCHHHHHH---HHHhCCCCcEEecCCCCcHHHHHHHHhc
Confidence 99985 4332 11111 1223567899999998875 111 1111 03457899999999886665544
Q ss_pred CCCceEEEecCC
Q 014145 184 SNSVVHVTTDNK 195 (430)
Q Consensus 184 ~~~L~~L~l~~~ 195 (430)
.++|++|.+.++
T Consensus 234 ~~~L~~L~l~~~ 245 (594)
T 2p1m_B 234 APQLEELGTGGY 245 (594)
T ss_dssp CTTCSEEECSBC
T ss_pred CCcceEcccccc
Confidence 567888876655
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=1.8e-15 Score=151.71 Aligned_cols=235 Identities=14% Similarity=0.083 Sum_probs=151.4
Q ss_pred CCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCcccccccc
Q 014145 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 77 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
.+++|+.|+++++ .+..++|.. +..+++|++|++++|. +... +. +..+++|++|+++++ .+..++
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~---------~~--l~~l~~L~~L~Ls~N-~l~~l~ 96 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISAAD-LAPFTKLELLNLSSNV-LYET---------LD--LESLSTLRTLDLNNN-YVQELL 96 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCGGG-GTTCTTCCEEECTTSC-CEEE---------EE--CTTCTTCCEEECCSS-EEEEEE
T ss_pred cCCCccEEEeeCC-cCCCCCHHH-HhCCCCCCEEEeeCCC-CCCC---------cc--cccCCCCCEEEecCC-cCCCCC
Confidence 4668999999997 466655443 7889999999999984 5554 22 478899999999986 454443
Q ss_pred CCccccccCCCccEEEeccCCCccccc---CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccC
Q 014145 157 NFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRL 233 (430)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 233 (430)
..++|++|++.+|. ++..+ .++|+.|++++|.+.++.+ ..++.+++|+.|+++++
T Consensus 97 -------~~~~L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~--------------~~~~~l~~L~~L~Ls~N 154 (487)
T 3oja_A 97 -------VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRD--------------LDEGCRSRVQYLDLKLN 154 (487)
T ss_dssp -------ECTTCCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGG--------------BCGGGGSSEEEEECTTS
T ss_pred -------CCCCcCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCc--------------hhhcCCCCCCEEECCCC
Confidence 34888999998876 55444 4577888888887665431 12355778888888875
Q ss_pred CCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccc
Q 014145 234 HKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKM 313 (430)
Q Consensus 234 ~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~ 313 (430)
.+....+..+. ..+++|+.|+++++. +..++. ...+++|+.|+++++ .+..++.. +..+++|+.|+++++.
T Consensus 155 -~l~~~~~~~l~--~~l~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N~- 225 (487)
T 3oja_A 155 -EIDTVNFAELA--ASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNNK- 225 (487)
T ss_dssp -CCCEEEGGGGG--GGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTSC-
T ss_pred -CCCCcChHHHh--hhCCcccEEecCCCc-cccccc-cccCCCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCCc-
Confidence 55554443331 356788888888764 444443 335778888888876 35555442 5667788888887754
Q ss_pred cchhhcccccccCCcceeecccceEeccCCCCC-ceeccCCcccCCCCccEEeec
Q 014145 314 IEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSL-TSFCLGNYALEFPSLEHVVVR 367 (430)
Q Consensus 314 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L-~~~~~~~~~~~~~~L~~L~l~ 367 (430)
+..++ .....+++|+.|++.+++-. ..++. ....++.|+.+.+.
T Consensus 226 l~~lp--------~~l~~l~~L~~L~l~~N~l~c~~~~~--~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 226 LVLIE--------KALRFSQNLEHFDLRGNGFHCGTLRD--FFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCEEC--------TTCCCCTTCCEEECTTCCBCHHHHHH--HHTTCHHHHHHHHH
T ss_pred Ccccc--------hhhccCCCCCEEEcCCCCCcCcchHH--HHHhCCCCcEEecc
Confidence 33332 12223667777777776543 12221 12235666666664
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.59 E-value=4.6e-14 Score=131.35 Aligned_cols=207 Identities=16% Similarity=0.168 Sum_probs=129.4
Q ss_pred CCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccc
Q 014145 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~ 155 (430)
...++|+.|+++++ .+..+++. .+..+++|++|++++| .+..+ +...+..+++|++|+++++..+..+
T Consensus 29 ~~~~~l~~L~l~~n-~i~~~~~~-~~~~~~~L~~L~l~~n-~l~~~---------~~~~~~~l~~L~~L~l~~n~~l~~~ 96 (285)
T 1ozn_A 29 GIPAASQRIFLHGN-RISHVPAA-SFRACRNLTILWLHSN-VLARI---------DAAAFTGLALLEQLDLSDNAQLRSV 96 (285)
T ss_dssp TCCTTCSEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCCEE---------CTTTTTTCTTCCEEECCSCTTCCCC
T ss_pred CCCCCceEEEeeCC-cCCccCHH-HcccCCCCCEEECCCC-cccee---------CHhhcCCccCCCEEeCCCCCCcccc
Confidence 34567888888776 35554333 3567778888888777 45554 2233466777888888776545555
Q ss_pred cCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCC
Q 014145 156 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK 235 (430)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 235 (430)
+.. .+..+++|++|++.++. ++..++ .....+++|++|+++++ .
T Consensus 97 ~~~--~~~~l~~L~~L~l~~n~-l~~~~~--------------------------------~~~~~l~~L~~L~l~~n-~ 140 (285)
T 1ozn_A 97 DPA--TFHGLGRLHTLHLDRCG-LQELGP--------------------------------GLFRGLAALQYLYLQDN-A 140 (285)
T ss_dssp CTT--TTTTCTTCCEEECTTSC-CCCCCT--------------------------------TTTTTCTTCCEEECCSS-C
T ss_pred CHH--HhcCCcCCCEEECCCCc-CCEECH--------------------------------hHhhCCcCCCEEECCCC-c
Confidence 221 14556666666666654 222211 12356788999999885 5
Q ss_pred ceeeccCCchhhhhcccccEEEeecCCCcccccC-CcccCCCCCEEEEccCCCcccccCchhhccccccceEeecccccc
Q 014145 236 VQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMI 314 (430)
Q Consensus 236 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l 314 (430)
++.+....+ ..+++|+.|+++++ .+..++. .+..+++|+.|+++++. +..+... .+..+++|++|+++++. +
T Consensus 141 l~~~~~~~~---~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~-l 213 (285)
T 1ozn_A 141 LQALPDDTF---RDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR-VAHVHPH-AFRDLGRLMTLYLFANN-L 213 (285)
T ss_dssp CCCCCTTTT---TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSSC-C
T ss_pred ccccCHhHh---ccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc-ccccCHh-HccCcccccEeeCCCCc-C
Confidence 666655555 67888999999886 4555554 36678889999998864 4444322 35677888888888763 3
Q ss_pred chhhcccccccCCcceeecccceEeccCCC
Q 014145 315 EQIIQLQVGEEAKGCVVFEELGYLGLDCLP 344 (430)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 344 (430)
..+... ....+++|++|++.+++
T Consensus 214 ~~~~~~-------~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 214 SALPTE-------ALAPLRALQYLRLNDNP 236 (285)
T ss_dssp SCCCHH-------HHTTCTTCCEEECCSSC
T ss_pred CcCCHH-------HcccCcccCEEeccCCC
Confidence 332210 11226777777777654
No 68
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.59 E-value=1.6e-16 Score=163.26 Aligned_cols=337 Identities=11% Similarity=0.034 Sum_probs=175.7
Q ss_pred ecccccchhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCC-cceEEEeCCCCCCccCchhHHHhcCCCCEE
Q 014145 32 WEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNN-LRHLVVDDCTNMLSAIPANLIRCLNNLRWL 110 (430)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~-L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 110 (430)
|++.....+..+. ..+++|++|+++++. +.+..... +. ..+++ |++|++++|..+.......+..++++|++|
T Consensus 96 ~~~~~~~~l~~l~---~~~~~L~~L~L~~~~-i~~~~~~~-l~-~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L 169 (592)
T 3ogk_B 96 WGGYVTPWVTEIS---NNLRQLKSVHFRRMI-VSDLDLDR-LA-KARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169 (592)
T ss_dssp SCCBCHHHHHHHH---HHCTTCCEEEEESCB-CCHHHHHH-HH-HHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEE
T ss_pred ccccchHHHHHHH---hhCCCCCeEEeeccE-ecHHHHHH-HH-HhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEE
Confidence 4444433444333 257889999988775 44211100 00 12444 899999888643321122235578899999
Q ss_pred EEecCCCccEecccccccCCccCcCCcCCccceeecCCcccc----ccccCCccccccCCCccEEEeccCCCccccc---
Q 014145 111 EVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKL----KRFCNFTENIIEMPELRYLAIENCPDMETFI--- 183 (430)
Q Consensus 111 ~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l----~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--- 183 (430)
++++|. +... +.... ..+...+++|++|+++++..- ..++.. ...+++|++|++.+|. +..++
T Consensus 170 ~L~~~~-~~~~----~~~~l-~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~-~~~l~~~~ 239 (592)
T 3ogk_B 170 LMEESS-FSEK----DGKWL-HELAQHNTSLEVLNFYMTEFAKISPKDLETI---ARNCRSLVSVKVGDFE-ILELVGFF 239 (592)
T ss_dssp ECTTCE-EECC----CSHHH-HHHHHHCCCCCEEECTTCCCSSCCHHHHHHH---HHHCTTCCEEECSSCB-GGGGHHHH
T ss_pred ECcccc-ccCc----chhHH-HHHHhcCCCccEEEeeccCCCccCHHHHHHH---HhhCCCCcEEeccCcc-HHHHHHHH
Confidence 998884 2221 00000 011245688888888765321 122211 4567888888888865 43333
Q ss_pred --CCCceEEEecCCCCC--------ccc---CCCceeeecCc-ccccccCCCCCCCCEEecccCCCceeeccCCchhhhh
Q 014145 184 --SNSVVHVTTDNKEPE--------KLT---SEENFFLTDQI-QPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKA 249 (430)
Q Consensus 184 --~~~L~~L~l~~~~~~--------~~~---~~~~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 249 (430)
.++|+++.+++.... .+. +++.+.+.+.. ..+-.....+++|++|++++|. +...... .....
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~--~~~~~ 316 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHC--TLIQK 316 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHH--HHHTT
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHH--HHHHh
Confidence 567888887643211 111 11111111100 0011112345677777777764 3221110 11155
Q ss_pred cccccEEEeecCCCcccccCCcccCCCCCEEEEcc----------CCCcccccCchhhccccccceEeeccccccchhhc
Q 014145 250 FANLIRLKISECSKLQKLVTPSWHLENLATLEVSK----------CHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQ 319 (430)
Q Consensus 250 l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~----------c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 319 (430)
+++|+.|++.++-.-..++.....+++|++|++++ |..+...........+++|++|++ .|..+.+...
T Consensus 317 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~ 395 (592)
T 3ogk_B 317 CPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESL 395 (592)
T ss_dssp CTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHH
T ss_pred CcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHH
Confidence 67777777764321122222234567788888874 666665433333456778888887 4444443211
Q ss_pred ccccccCCcceeecccceEeccC---CCCCceeccC----CcccCCCCccEEeeccCCC-Ccc--cCCCCcCCCCceeee
Q 014145 320 LQVGEEAKGCVVFEELGYLGLDC---LPSLTSFCLG----NYALEFPSLEHVVVRQCPT-MKI--FSQGVVDAPKLNKVK 389 (430)
Q Consensus 320 ~~~~~~~~~~~~~~~L~~L~l~~---c~~L~~~~~~----~~~~~~~~L~~L~l~~c~~-l~~--~~~~~~~~~~L~~l~ 389 (430)
.. -...+++|++|++.+ |..+++.+.. .....+++|++|++++|.. ++. +......+++|++|+
T Consensus 396 ~~------l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~ 469 (592)
T 3ogk_B 396 ES------IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML 469 (592)
T ss_dssp HH------HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEE
T ss_pred HH------HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEee
Confidence 00 001267788888873 5566654221 1123478999999987764 221 111123478899999
Q ss_pred ccccC
Q 014145 390 PTEEE 394 (430)
Q Consensus 390 l~~~~ 394 (430)
+.++.
T Consensus 470 L~~n~ 474 (592)
T 3ogk_B 470 LGYVG 474 (592)
T ss_dssp ECSCC
T ss_pred ccCCC
Confidence 96543
No 69
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=3.9e-14 Score=135.98 Aligned_cols=225 Identities=15% Similarity=0.146 Sum_probs=146.7
Q ss_pred CCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccC
Q 014145 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 157 (430)
Q Consensus 78 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~ 157 (430)
.++++.|+++++ ++..+ +.+.+.++++|++|++++|...+.+ |.+.+..++++.++...++..+..++.
T Consensus 29 ~~~l~~L~Ls~N-~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~~i---------~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 29 PRNAIELRFVLT-KLRVI-QKGAFSGFGDLEKIEISQNDVLEVI---------EADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp CTTCSEEEEESC-CCSEE-CTTSSTTCTTCCEEEEECCTTCCEE---------CTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CCCCCEEEccCC-cCCCc-CHHHHcCCCCCCEEECcCCCCCCcc---------ChhHhhcchhhhhhhcccCCcccccCc
Confidence 467888888876 45554 3333677888888888888655555 455557777777766655566666643
Q ss_pred CccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCce
Q 014145 158 FTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQ 237 (430)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 237 (430)
. ....+++|++|.+.++. ++..++. ......++..|++.++..+.
T Consensus 98 ~--~f~~l~~L~~L~l~~n~-l~~~~~~--------------------------------~~~~~~~l~~l~l~~~~~i~ 142 (350)
T 4ay9_X 98 E--AFQNLPNLQYLLISNTG-IKHLPDV--------------------------------HKIHSLQKVLLDIQDNINIH 142 (350)
T ss_dssp T--SBCCCTTCCEEEEEEEC-CSSCCCC--------------------------------TTCCBSSCEEEEEESCTTCC
T ss_pred h--hhhhccccccccccccc-cccCCch--------------------------------hhcccchhhhhhhccccccc
Confidence 2 25667777777777764 3332210 11233456677777766777
Q ss_pred eeccCCchhhhhc-ccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccch
Q 014145 238 HLWKENDESNKAF-ANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQ 316 (430)
Q Consensus 238 ~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~ 316 (430)
.+....+ ..+ ..++.|+++++ .++.++......++|+++++.++..++.++.. .+..+++|++|+++++ .++.
T Consensus 143 ~l~~~~f---~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~-~f~~l~~L~~LdLs~N-~l~~ 216 (350)
T 4ay9_X 143 TIERNSF---VGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPND-VFHGASGPVILDISRT-RIHS 216 (350)
T ss_dssp EECTTSS---TTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTT-TTTTEECCSEEECTTS-CCCC
T ss_pred cccccch---hhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHH-HhccCcccchhhcCCC-CcCc
Confidence 7765554 333 46777888774 56667666556667888888877778777654 3467788888888775 4555
Q ss_pred hhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeec
Q 014145 317 IIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVR 367 (430)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~ 367 (430)
++.. .+..|++|.+.++.+++.++. ...+++|+.+++.
T Consensus 217 lp~~----------~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 217 LPSY----------GLENLKKLRARSTYNLKKLPT---LEKLVALMEASLT 254 (350)
T ss_dssp CCSS----------SCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECS
T ss_pred cChh----------hhccchHhhhccCCCcCcCCC---chhCcChhhCcCC
Confidence 5422 277788888888888888774 2347788888874
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.59 E-value=5e-16 Score=159.63 Aligned_cols=318 Identities=15% Similarity=0.109 Sum_probs=187.5
Q ss_pred cCCCCcceeecccccCCeee------ccCCC---C--CCCCCCCcceEEEeCCCCCCccCchhHHHhcCC-CCEEEEecC
Q 014145 48 IGFRDIKYLQLGHFPRLQEI------WHGQA---L--PVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNN-LRWLEVRNC 115 (430)
Q Consensus 48 ~~l~~L~~L~l~~~~~l~~~------~~~~~---~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~-L~~L~l~~~ 115 (430)
..|++|++|++++++.+.+. |.+.. + ....+++|++|++++| .+....+..+...+++ |++|++++|
T Consensus 70 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~ 148 (592)
T 3ogk_B 70 RRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKC 148 (592)
T ss_dssp HHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred HhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCC
Confidence 46899999999987654321 11100 0 0015899999999998 3444323333333555 999999999
Q ss_pred CCccEecccccccCCccCcCCcCCccceeecCCcccccc----ccCCccccccCCCccEEEeccCCCcc-----ccc---
Q 014145 116 DSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKR----FCNFTENIIEMPELRYLAIENCPDME-----TFI--- 183 (430)
Q Consensus 116 ~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~----~~~~~~~~~~~~~L~~L~l~~c~~l~-----~~~--- 183 (430)
..+... ++ ..+...+++|++|++++|..... ++. ....+++|++|++.++. ++ .++
T Consensus 149 ~~~~~~----~l----~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~---~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~ 216 (592)
T 3ogk_B 149 SGFTTD----GL----LSIVTHCRKIKTLLMEESSFSEKDGKWLHE---LAQHNTSLEVLNFYMTE-FAKISPKDLETIA 216 (592)
T ss_dssp EEEEHH----HH----HHHHHHCTTCSEEECTTCEEECCCSHHHHH---HHHHCCCCCEEECTTCC-CSSCCHHHHHHHH
T ss_pred CCcCHH----HH----HHHHhhCCCCCEEECccccccCcchhHHHH---HHhcCCCccEEEeeccC-CCccCHHHHHHHH
Confidence 632211 11 11124789999999999853111 111 14578999999998775 43 221
Q ss_pred --CCCceEEEecCCCCCccc-------CCCceeeec-----CcccccccCCCCCCCCEEecccCCCceeeccCCchhhhh
Q 014145 184 --SNSVVHVTTDNKEPEKLT-------SEENFFLTD-----QIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKA 249 (430)
Q Consensus 184 --~~~L~~L~l~~~~~~~~~-------~~~~l~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 249 (430)
.++|+.|++++|.+.++. +++.+.+.. .....+.....+++|+.|.++++. ...+ +..+ ..
T Consensus 217 ~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l-~~~~---~~ 291 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEM-PILF---PF 291 (592)
T ss_dssp HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTG-GGGG---GG
T ss_pred hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHH-HHHH---hh
Confidence 679999999998765432 233333311 012333345566777777777641 1111 1122 56
Q ss_pred cccccEEEeecCCCccc-ccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeecc----------ccccchhh
Q 014145 250 FANLIRLKISECSKLQK-LVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIAD----------CKMIEQII 318 (430)
Q Consensus 250 l~~L~~L~l~~c~~l~~-l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~----------c~~l~~~~ 318 (430)
+++|++|++++|..... ++..+..+++|++|+++++ +.+.....+...+++|++|++++ |..+.+..
T Consensus 292 ~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~ 369 (592)
T 3ogk_B 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG 369 (592)
T ss_dssp GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH
T ss_pred cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc--cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH
Confidence 78888888888762221 2222457788888888743 33322222346678888888885 66554321
Q ss_pred cccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeecc---CCCCcccCCC------CcCCCCceeee
Q 014145 319 QLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ---CPTMKIFSQG------VVDAPKLNKVK 389 (430)
Q Consensus 319 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~---c~~l~~~~~~------~~~~~~L~~l~ 389 (430)
... -...+++|++|++ .|..++..........+++|++|++.+ |..++..|.. ...+++|++|+
T Consensus 370 ~~~------l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~ 442 (592)
T 3ogk_B 370 LIA------LAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442 (592)
T ss_dssp HHH------HHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred HHH------HHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence 100 0112688888888 455665433211122378899999974 5566654321 34578899999
Q ss_pred ccc
Q 014145 390 PTE 392 (430)
Q Consensus 390 l~~ 392 (430)
+.+
T Consensus 443 L~~ 445 (592)
T 3ogk_B 443 FYL 445 (592)
T ss_dssp EEC
T ss_pred Eec
Confidence 854
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.58 E-value=3.4e-16 Score=160.87 Aligned_cols=139 Identities=12% Similarity=0.156 Sum_probs=90.8
Q ss_pred cCCCCcceeecccccCCeeecc------CCC-----CCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCC
Q 014145 48 IGFRDIKYLQLGHFPRLQEIWH------GQA-----LPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD 116 (430)
Q Consensus 48 ~~l~~L~~L~l~~~~~l~~~~~------~~~-----~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 116 (430)
..|++|+.|++++++.+.+... +.. .-...+++|+.|++++|. +....+..+...+++|++|++++|.
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 4689999999999875543211 100 001357899999999985 5543344444579999999999996
Q ss_pred CccEecccccccCCccCcCCcCCccceeecCCcccccccc-CC-ccccccCCCccEEEeccCC-Cccc--cc-----CCC
Q 014145 117 SLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC-NF-TENIIEMPELRYLAIENCP-DMET--FI-----SNS 186 (430)
Q Consensus 117 ~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~-~~-~~~~~~~~~L~~L~l~~c~-~l~~--~~-----~~~ 186 (430)
.+.... ...+...+++|++|++++|. +.... .. ......+++|++|++.+|. .+.. +. .++
T Consensus 142 ~~~~~~--------l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~ 212 (594)
T 2p1m_B 142 GFSTDG--------LAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN 212 (594)
T ss_dssp EEEHHH--------HHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTT
T ss_pred CCCHHH--------HHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCC
Confidence 554310 01223578999999999986 32211 00 0113478899999999986 2221 11 589
Q ss_pred ceEEEecCCC
Q 014145 187 VVHVTTDNKE 196 (430)
Q Consensus 187 L~~L~l~~~~ 196 (430)
|+.|++++|.
T Consensus 213 L~~L~L~~~~ 222 (594)
T 2p1m_B 213 LKSLKLNRAV 222 (594)
T ss_dssp CCEEECCTTS
T ss_pred CcEEecCCCC
Confidence 9999999984
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=2.3e-14 Score=143.74 Aligned_cols=212 Identities=17% Similarity=0.170 Sum_probs=158.8
Q ss_pred CCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccccc
Q 014145 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 128 (430)
.+++|++|+++++. +..++... ...+++|++|++++|. +...++ +..+++|++|++++| .+..+
T Consensus 32 ~~~~L~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N-~l~~l------- 95 (487)
T 3oja_A 32 SAWNVKELDLSGNP-LSQISAAD---LAPFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNN-YVQEL------- 95 (487)
T ss_dssp TGGGCCEEECCSSC-CCCCCGGG---GTTCTTCCEEECTTSC-CEEEEE---CTTCTTCCEEECCSS-EEEEE-------
T ss_pred cCCCccEEEeeCCc-CCCCCHHH---HhCCCCCCEEEeeCCC-CCCCcc---cccCCCCCEEEecCC-cCCCC-------
Confidence 45599999999887 66543222 2578999999999984 555444 568999999999998 56665
Q ss_pred CCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc------CCCceEEEecCCCCCcccC
Q 014145 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTS 202 (430)
Q Consensus 129 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~~~~~ 202 (430)
...++|++|+++++ .+..++. ..+++|++|++.+|. ++..+ .++|+.|++++|.+.++.+
T Consensus 96 -------~~~~~L~~L~L~~N-~l~~~~~-----~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 96 -------LVGPSIETLHAANN-NISRVSC-----SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp -------EECTTCCEEECCSS-CCCCEEE-----CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred -------CCCCCcCEEECcCC-cCCCCCc-----cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence 23389999999986 4444432 357899999999886 55443 4689999999999776431
Q ss_pred CCceeeecCcccccccC-CCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEE
Q 014145 203 EENFFLTDQIQPLFDEK-VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLE 281 (430)
Q Consensus 203 ~~~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~ 281 (430)
... ..+++|+.|+++++ .++.+... ..+++|+.|+++++ .+..+|..+..+++|+.|+
T Consensus 162 --------------~~l~~~l~~L~~L~Ls~N-~l~~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~ 220 (487)
T 3oja_A 162 --------------AELAASSDTLEHLNLQYN-FIYDVKGQ-----VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWIS 220 (487)
T ss_dssp --------------GGGGGGTTTCCEEECTTS-CCCEEECC-----CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEE
T ss_pred --------------HHHhhhCCcccEEecCCC-cccccccc-----ccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEE
Confidence 122 25789999999996 56666322 45899999999996 5666777778899999999
Q ss_pred EccCCCcccccCchhhccccccceEeecccccc
Q 014145 282 VSKCHGLINVLTLSTSESLVNLGRMKIADCKMI 314 (430)
Q Consensus 282 l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l 314 (430)
++++ .+..+|. .+..+++|+.|++++++..
T Consensus 221 Ls~N-~l~~lp~--~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 221 LRNN-KLVLIEK--ALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTS-CCCEECT--TCCCCTTCCEEECTTCCBC
T ss_pred ecCC-cCcccch--hhccCCCCCEEEcCCCCCc
Confidence 9996 4666665 3567899999999987654
No 73
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.56 E-value=5.4e-17 Score=161.64 Aligned_cols=149 Identities=13% Similarity=0.098 Sum_probs=79.7
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCC----CcceEEEeCCCCCCccC---chhHHHhcCCCCEEEE
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFN----NLRHLVVDDCTNMLSAI---PANLIRCLNNLRWLEV 112 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~----~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~l 112 (430)
...++..+..+++|++|+++++. +.+..... + ...++ +|++|++++|. +.... ....+..+++|++|++
T Consensus 45 ~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~-l-~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~L 120 (461)
T 1z7x_W 45 CKDISSALRVNPALAELNLRSNE-LGDVGVHC-V-LQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHL 120 (461)
T ss_dssp HHHHHHHHHTCTTCCEEECTTCC-CHHHHHHH-H-HHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEEC
T ss_pred HHHHHHHHHhCCCcCEEeCCCCc-CChHHHHH-H-HHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEEC
Confidence 34555556677888888888765 44311000 0 01122 68888888873 44211 1223567788888888
Q ss_pred ecCCCccEecccccccCCccCcCCcCCccceeecCCcccccccc--CCccccccCCCccEEEeccCCCccccc-------
Q 014145 113 RNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC--NFTENIIEMPELRYLAIENCPDMETFI------- 183 (430)
Q Consensus 113 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~~~~~L~~L~l~~c~~l~~~~------- 183 (430)
++|. +.... .......+....++|++|++++|. +.... .....+..+++|++|++.+|. ++...
T Consensus 121 s~n~-i~~~~----~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~ 193 (461)
T 1z7x_W 121 SDNL-LGDAG----LQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQG 193 (461)
T ss_dssp CSSB-CHHHH----HHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHH
T ss_pred CCCc-CchHH----HHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHH
Confidence 8874 43210 000011222334578888887763 32210 000113456788888887765 44321
Q ss_pred ----CCCceEEEecCCCCCc
Q 014145 184 ----SNSVVHVTTDNKEPEK 199 (430)
Q Consensus 184 ----~~~L~~L~l~~~~~~~ 199 (430)
.++|+.|++++|.+..
T Consensus 194 l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 194 LKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp HHHSCCCCCEEECTTSCCBT
T ss_pred HhcCCCCceEEEccCCCCcH
Confidence 2377888888777554
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.55 E-value=1.6e-13 Score=126.61 Aligned_cols=199 Identities=18% Similarity=0.156 Sum_probs=120.1
Q ss_pred CcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCc
Q 014145 52 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 131 (430)
Q Consensus 52 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 131 (430)
+.+.+++++.. ++.++ ....++|+.|+++++ ++..+++. .+.++++|++|++++| .+..+ +
T Consensus 17 ~~~~l~~~~~~-l~~ip------~~~~~~l~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~i---------~ 77 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAIP------SNIPADTKKLDLQSN-KLSSLPSK-AFHRLTKLRLLYLNDN-KLQTL---------P 77 (270)
T ss_dssp TTTEEECTTSC-CSSCC------SCCCTTCSEEECCSS-CCSCCCTT-SSSSCTTCCEEECCSS-CCSCC---------C
T ss_pred CCCEEEccCCC-CCccC------CCCCCCCCEEECcCC-CCCeeCHH-HhcCCCCCCEEECCCC-ccCee---------C
Confidence 46677777554 55532 223467888888876 35554332 3567888888888877 35554 4
Q ss_pred cCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecC
Q 014145 132 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQ 211 (430)
Q Consensus 132 ~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 211 (430)
.+++..+++|++|+++++ .+..++.. ....+++|++|.+.++. ++.+++
T Consensus 78 ~~~~~~l~~L~~L~l~~n-~l~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~--------------------------- 126 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDN-KLQALPIG--VFDQLVNLAELRLDRNQ-LKSLPP--------------------------- 126 (270)
T ss_dssp TTTTSSCTTCCEEECCSS-CCCCCCTT--TTTTCSSCCEEECCSSC-CCCCCT---------------------------
T ss_pred hhhhcCCCCCCEEECCCC-cCCcCCHh--HcccccCCCEEECCCCc-cCeeCH---------------------------
Confidence 555567788888888875 34444322 14556677777776654 332221
Q ss_pred cccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccC-CcccCCCCCEEEEccCCCccc
Q 014145 212 IQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLIN 290 (430)
Q Consensus 212 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~ 290 (430)
...+.+++|++|+++++ .++.+....+ ..+++|+.|+++++ .+..++. .+..+++|+.|+++++ .+..
T Consensus 127 -----~~~~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 195 (270)
T 2o6q_A 127 -----RVFDSLTKLTYLSLGYN-ELQSLPKGVF---DKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKR 195 (270)
T ss_dssp -----TTTTTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSC
T ss_pred -----HHhCcCcCCCEEECCCC-cCCccCHhHc---cCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCc
Confidence 11245677777777774 5555554444 56677777777775 3444443 3456677777777775 4555
Q ss_pred ccCchhhccccccceEeecccc
Q 014145 291 VLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 291 l~~~~~~~~l~~L~~L~l~~c~ 312 (430)
++.. .+..+++|+.|++++++
T Consensus 196 ~~~~-~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 196 VPEG-AFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCTT-TTTTCTTCCEEECCSSC
T ss_pred CCHH-HhccccCCCEEEecCCC
Confidence 5442 24556777777776654
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=2.8e-13 Score=125.39 Aligned_cols=213 Identities=17% Similarity=0.204 Sum_probs=127.8
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
+.++|..+. ++|++|+++++. +..+.... ...+++|++|++++| .+..+.+. .+.++++|++|++++|. +.
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~-l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~ 89 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNP-LRHLGSYS---FFSFPELQVLDLSRC-EIQTIEDG-AYQSLSHLSTLILTGNP-IQ 89 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCC-CCEECTTT---TTTCTTCSEEECTTC-CCCEECTT-TTTTCTTCCEEECTTCC-CC
T ss_pred ccccCCCCC--CCccEEECCCCc-ccccCHhH---hccccCCcEEECCCC-cCCccCHH-HccCCcCCCEEECCCCc-cC
Confidence 444554332 468888887776 66543321 145778888888876 45554332 25677888888888773 55
Q ss_pred EecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCc
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEK 199 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~ 199 (430)
.+ +...+..+++|++|++.++ .+..++.. .+..+++|++|++.++. ++...
T Consensus 90 ~~---------~~~~~~~l~~L~~L~l~~n-~l~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~---------------- 140 (276)
T 2z62_A 90 SL---------ALGAFSGLSSLQKLVAVET-NLASLENF--PIGHLKTLKELNVAHNL-IQSFK---------------- 140 (276)
T ss_dssp EE---------CTTTTTTCTTCCEEECTTS-CCCCSTTC--CCTTCTTCCEEECCSSC-CCCCC----------------
T ss_pred cc---------ChhhhcCCccccEEECCCC-CccccCch--hcccCCCCCEEECcCCc-cceec----------------
Confidence 54 3333467778888888775 33333221 14556666666666654 22211
Q ss_pred ccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhccccc----EEEeecCCCcccccCCcccCC
Q 014145 200 LTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLI----RLKISECSKLQKLVTPSWHLE 275 (430)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~----~L~l~~c~~l~~l~~~l~~l~ 275 (430)
+. ...+.+++|++|+++++ .++.+....+ ..+++|+ +|+++++ .+..++.......
T Consensus 141 l~---------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~ 200 (276)
T 2z62_A 141 LP---------------EYFSNLTNLEHLDLSSN-KIQSIYCTDL---RVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEI 200 (276)
T ss_dssp CC---------------GGGGGCTTCCEEECCSS-CCCEECGGGG---HHHHTCTTCCEEEECCSS-CCCEECTTSSCSC
T ss_pred Cc---------------hhhccCCCCCEEECCCC-CCCcCCHHHh---hhhhhccccceeeecCCC-cccccCccccCCC
Confidence 00 12356778888888875 5666655555 4555555 7777775 4555555544555
Q ss_pred CCCEEEEccCCCcccccCchhhccccccceEeecccc
Q 014145 276 NLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 276 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 312 (430)
+|++|+++++. ++.++.. .+..+++|++|++++++
T Consensus 201 ~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 201 RLKELALDTNQ-LKSVPDG-IFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CEEEEECCSSC-CSCCCTT-TTTTCCSCCEEECCSSC
T ss_pred cccEEECCCCc-eeecCHh-HhcccccccEEEccCCc
Confidence 78888888764 6665542 34667788888887543
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.51 E-value=4.5e-13 Score=125.03 Aligned_cols=199 Identities=15% Similarity=0.065 Sum_probs=119.1
Q ss_pred ccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccc
Q 014145 47 MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEE 126 (430)
Q Consensus 47 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 126 (430)
...+++++++++++.. ++.++ ....++++.|+++++. +..+.+. .+..+++|++|++++| .+..+
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~ip------~~~~~~l~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~----- 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTALP------PDLPKDTTILHLSENL-LYTFSLA-TLMPYTRLTQLNLDRA-ELTKL----- 70 (290)
T ss_dssp EECSTTCCEEECTTSC-CSSCC------SCCCTTCCEEECTTSC-CSEEEGG-GGTTCTTCCEEECTTS-CCCEE-----
T ss_pred ccccCCccEEECCCCC-CCcCC------CCCCCCCCEEEcCCCc-CCccCHH-HhhcCCCCCEEECCCC-ccCcc-----
Confidence 4567788999888765 66533 2335789999999873 5554333 3778899999999988 46665
Q ss_pred ccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCce
Q 014145 127 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENF 206 (430)
Q Consensus 127 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l 206 (430)
+.. ..+++|++|+++++ .+..+|.. +..+++|++|.+.++. ++.+++.
T Consensus 71 ----~~~--~~l~~L~~L~Ls~N-~l~~l~~~---~~~l~~L~~L~l~~N~-l~~l~~~--------------------- 118 (290)
T 1p9a_G 71 ----QVD--GTLPVLGTLDLSHN-QLQSLPLL---GQTLPALTVLDVSFNR-LTSLPLG--------------------- 118 (290)
T ss_dssp ----ECC--SCCTTCCEEECCSS-CCSSCCCC---TTTCTTCCEEECCSSC-CCCCCSS---------------------
T ss_pred ----cCC--CCCCcCCEEECCCC-cCCcCchh---hccCCCCCEEECCCCc-CcccCHH---------------------
Confidence 221 67788999999885 55566543 5677888888887765 4443321
Q ss_pred eeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCc-ccCCCCCEEEEccC
Q 014145 207 FLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS-WHLENLATLEVSKC 285 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l-~~l~~L~~L~l~~c 285 (430)
.+..+++|++|+++++ .++.+....+ ..+++|+.|+++++ .++.+|... ..+++|+.|+++++
T Consensus 119 -----------~~~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 119 -----------ALRGLGELQELYLKGN-ELKTLPPGLL---TPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp -----------TTTTCTTCCEEECTTS-CCCCCCTTTT---TTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred -----------HHcCCCCCCEEECCCC-CCCccChhhc---ccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC
Confidence 1234455556665553 4444444333 44555666666554 344444332 34556666666554
Q ss_pred CCcccccCchhhccccccceEeeccc
Q 014145 286 HGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 286 ~~l~~l~~~~~~~~l~~L~~L~l~~c 311 (430)
.+..++.. +...+.|+.|+++++
T Consensus 183 -~l~~ip~~--~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 183 -SLYTIPKG--FFGSHLLPFAFLHGN 205 (290)
T ss_dssp -CCCCCCTT--TTTTCCCSEEECCSC
T ss_pred -cCCccChh--hcccccCCeEEeCCC
Confidence 34444431 233445666665543
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.50 E-value=9.7e-15 Score=139.12 Aligned_cols=234 Identities=14% Similarity=0.183 Sum_probs=123.3
Q ss_pred CCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCC
Q 014145 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 130 (430)
++++.|++.++. +...+... ..+++|++|++++|. +........+..+++|++|++++|. +....
T Consensus 70 ~~l~~L~l~~n~-l~~~~~~~----~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~-------- 134 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQPLAEH----FSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR-LSDPI-------- 134 (336)
T ss_dssp TTCSEEECTTCE-ECSCCCSC----CCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCB-CCHHH--------
T ss_pred ccceEEEcCCcc-ccccchhh----ccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcc-cCHHH--------
Confidence 455555555543 33222222 345566666666653 3221112234556666666666653 22110
Q ss_pred ccCcCCcCCccceeecCCcccccc--ccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceee
Q 014145 131 KEHIGPLFPKLFELTLMDLPKLKR--FCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFL 208 (430)
Q Consensus 131 ~~~l~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 208 (430)
+..+ ..+++|++|++++|..+.. ++.. +..+++|++|++.+|..++... +.
T Consensus 135 ~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~---~~~~~~L~~L~l~~~~~l~~~~----------------~~------- 187 (336)
T 2ast_B 135 VNTL-AKNSNLVRLNLSGCSGFSEFALQTL---LSSCSRLDELNLSWCFDFTEKH----------------VQ------- 187 (336)
T ss_dssp HHHH-TTCTTCSEEECTTCBSCCHHHHHHH---HHHCTTCCEEECCCCTTCCHHH----------------HH-------
T ss_pred HHHH-hcCCCCCEEECCCCCCCCHHHHHHH---HhcCCCCCEEcCCCCCCcChHH----------------HH-------
Confidence 1222 3455666666665543332 2111 3345555555555553333210 00
Q ss_pred ecCcccccccCCCCC-CCCEEecccCC-Cceee-ccCCchhhhhcccccEEEeecCCCcc-cccCCcccCCCCCEEEEcc
Q 014145 209 TDQIQPLFDEKVAFP-QLRYLELSRLH-KVQHL-WKENDESNKAFANLIRLKISECSKLQ-KLVTPSWHLENLATLEVSK 284 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~-~L~~L~l~~~~-~l~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~l~~l~~L~~L~l~~ 284 (430)
.....++ +|++|++++|. .+++. .... ...+++|+.|++++|..++ ..+..+..+++|++|++++
T Consensus 188 --------~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~---~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 256 (336)
T 2ast_B 188 --------VAVAHVSETITQLNLSGYRKNLQKSDLSTL---VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256 (336)
T ss_dssp --------HHHHHSCTTCCEEECCSCGGGSCHHHHHHH---HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred --------HHHHhcccCCCEEEeCCCcccCCHHHHHHH---HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence 1134567 88888888874 33211 0111 1668889999999887443 4555677888999999999
Q ss_pred CCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceee-cccceEeccCCCCCceecc
Q 014145 285 CHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVF-EELGYLGLDCLPSLTSFCL 351 (430)
Q Consensus 285 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~L~~~~~ 351 (430)
|..+.+.... .+..+++|++|++++| +.+-. ...+ ..+..|++. +..++.+..
T Consensus 257 ~~~~~~~~~~-~l~~~~~L~~L~l~~~--i~~~~----------~~~l~~~l~~L~l~-~n~l~~~~~ 310 (336)
T 2ast_B 257 CYDIIPETLL-ELGEIPTLKTLQVFGI--VPDGT----------LQLLKEALPHLQIN-CSHFTTIAR 310 (336)
T ss_dssp CTTCCGGGGG-GGGGCTTCCEEECTTS--SCTTC----------HHHHHHHSTTSEES-CCCSCCTTC
T ss_pred CCCCCHHHHH-HHhcCCCCCEEeccCc--cCHHH----------HHHHHhhCcceEEe-cccCccccC
Confidence 8755433221 2567889999999887 22211 0012 346677775 456666543
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.49 E-value=2.4e-13 Score=128.00 Aligned_cols=189 Identities=18% Similarity=0.241 Sum_probs=104.8
Q ss_pred CCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccC
Q 014145 50 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 129 (430)
Q Consensus 50 l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 129 (430)
+++|++|+++++. ++.+. +. ..+++|+.|++++| .+..+.+ +..+++|++|++++|. +..+
T Consensus 40 l~~L~~L~l~~~~-i~~l~-~~----~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n~-l~~~-------- 100 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTTIE-GV----QYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNP-LKNV-------- 100 (308)
T ss_dssp HHTCCEEECTTSC-CCCCT-TG----GGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCC-CSCC--------
T ss_pred cCCcCEEEeeCCC-ccCch-hh----hccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCCc-CCCc--------
Confidence 4455555555543 43321 11 34555555555555 2333222 3455555555555552 3332
Q ss_pred CccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeee
Q 014145 130 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLT 209 (430)
Q Consensus 130 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 209 (430)
+ . +..+++|++|+++++ .+..++. +..+++|++|++. +|.+..+.
T Consensus 101 -~-~-~~~l~~L~~L~l~~n-~l~~~~~----l~~l~~L~~L~l~-------------------~n~l~~~~-------- 145 (308)
T 1h6u_A 101 -S-A-IAGLQSIKTLDLTST-QITDVTP----LAGLSNLQVLYLD-------------------LNQITNIS-------- 145 (308)
T ss_dssp -G-G-GTTCTTCCEEECTTS-CCCCCGG----GTTCTTCCEEECC-------------------SSCCCCCG--------
T ss_pred -h-h-hcCCCCCCEEECCCC-CCCCchh----hcCCCCCCEEECC-------------------CCccCcCc--------
Confidence 1 1 244555555555554 2333321 3444455555554 44443332
Q ss_pred cCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcc
Q 014145 210 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLI 289 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~ 289 (430)
..+.+++|+.|+++++ .++.+.. + ..+++|+.|+++++ .+..++. +..+++|++|++++| .+.
T Consensus 146 --------~l~~l~~L~~L~l~~n-~l~~~~~--l---~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N-~l~ 208 (308)
T 1h6u_A 146 --------PLAGLTNLQYLSIGNA-QVSDLTP--L---ANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QIS 208 (308)
T ss_dssp --------GGGGCTTCCEEECCSS-CCCCCGG--G---TTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCC
T ss_pred --------cccCCCCccEEEccCC-cCCCChh--h---cCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCC-ccC
Confidence 1356778888888875 5555433 3 67788888888876 3444443 567788888888886 355
Q ss_pred cccCchhhccccccceEeecccc
Q 014145 290 NVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 290 ~l~~~~~~~~l~~L~~L~l~~c~ 312 (430)
.++. +..+++|+.|++++++
T Consensus 209 ~~~~---l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 209 DVSP---LANTSNLFIVTLTNQT 228 (308)
T ss_dssp BCGG---GTTCTTCCEEEEEEEE
T ss_pred cccc---ccCCCCCCEEEccCCe
Confidence 5543 5677888888888765
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.49 E-value=1.6e-13 Score=126.82 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=27.8
Q ss_pred CCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCccccc-CCcccCCCCCEEEEccC
Q 014145 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TPSWHLENLATLEVSKC 285 (430)
Q Consensus 221 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c 285 (430)
.+++|+.|+++++ .++.+....+ ..+++|+.|+++++. +..++ ..+..+++|+.|+++++
T Consensus 155 ~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 155 KLTNLTELDLSYN-QLQSLPEGVF---DKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCccCCEEECCCC-CcCccCHHHh---cCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCC
Confidence 4455555555553 3444333333 445555555555543 22222 22344555555555554
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.49 E-value=3.8e-13 Score=126.70 Aligned_cols=195 Identities=18% Similarity=0.234 Sum_probs=143.0
Q ss_pred CCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccc
Q 014145 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~ 155 (430)
..+++|+.|++++| .+..+ +. +..+++|++|++++| .+..+ +. +..+++|++|+++++. +..+
T Consensus 38 ~~l~~L~~L~l~~~-~i~~l-~~--~~~l~~L~~L~L~~n-~i~~~---------~~--~~~l~~L~~L~L~~n~-l~~~ 100 (308)
T 1h6u_A 38 ADLDGITTLSAFGT-GVTTI-EG--VQYLNNLIGLELKDN-QITDL---------AP--LKNLTKITELELSGNP-LKNV 100 (308)
T ss_dssp HHHHTCCEEECTTS-CCCCC-TT--GGGCTTCCEEECCSS-CCCCC---------GG--GTTCCSCCEEECCSCC-CSCC
T ss_pred HHcCCcCEEEeeCC-CccCc-hh--hhccCCCCEEEccCC-cCCCC---------hh--HccCCCCCEEEccCCc-CCCc
Confidence 45889999999998 45554 32 667999999999998 45555 33 4788999999999864 5555
Q ss_pred cCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCC
Q 014145 156 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK 235 (430)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 235 (430)
+. +..+++|++|++.+|. ++.+ .....+++|++|+++++ .
T Consensus 101 ~~----~~~l~~L~~L~l~~n~-l~~~----------------------------------~~l~~l~~L~~L~l~~n-~ 140 (308)
T 1h6u_A 101 SA----IAGLQSIKTLDLTSTQ-ITDV----------------------------------TPLAGLSNLQVLYLDLN-Q 140 (308)
T ss_dssp GG----GTTCTTCCEEECTTSC-CCCC----------------------------------GGGTTCTTCCEEECCSS-C
T ss_pred hh----hcCCCCCCEEECCCCC-CCCc----------------------------------hhhcCCCCCCEEECCCC-c
Confidence 32 6677778888777765 3321 12467899999999996 5
Q ss_pred ceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccc
Q 014145 236 VQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIE 315 (430)
Q Consensus 236 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~ 315 (430)
++.+.. + ..+++|+.|+++++ .+..++. +..+++|+.|+++++ .+..++. +..+++|++|++++|. +.
T Consensus 141 l~~~~~--l---~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~L~~N~-l~ 208 (308)
T 1h6u_A 141 ITNISP--L---AGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKADDN-KISDISP---LASLPNLIEVHLKNNQ-IS 208 (308)
T ss_dssp CCCCGG--G---GGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECTTSC-CC
T ss_pred cCcCcc--c---cCCCCccEEEccCC-cCCCChh-hcCCCCCCEEECCCC-ccCcChh---hcCCCCCCEEEccCCc-cC
Confidence 666543 3 78899999999997 4555654 778999999999997 4666654 6788999999999875 34
Q ss_pred hhhcccccccCCcceeecccceEeccCCCCCcee
Q 014145 316 QIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSF 349 (430)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 349 (430)
.+. ....+++|+.|++.+++ ++..
T Consensus 209 ~~~---------~l~~l~~L~~L~l~~N~-i~~~ 232 (308)
T 1h6u_A 209 DVS---------PLANTSNLFIVTLTNQT-ITNQ 232 (308)
T ss_dssp BCG---------GGTTCTTCCEEEEEEEE-EECC
T ss_pred ccc---------cccCCCCCCEEEccCCe-eecC
Confidence 332 12338899999998864 4443
No 81
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.48 E-value=4.7e-16 Score=154.83 Aligned_cols=318 Identities=15% Similarity=0.081 Sum_probs=177.4
Q ss_pred cCCCCcceeecccccCCeeeccCCCCC--CCCCCCcceEEEeCCCCCCccCchhHHHhcC----CCCEEEEecCCCccEe
Q 014145 48 IGFRDIKYLQLGHFPRLQEIWHGQALP--VSFFNNLRHLVVDDCTNMLSAIPANLIRCLN----NLRWLEVRNCDSLEEV 121 (430)
Q Consensus 48 ~~l~~L~~L~l~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~----~L~~L~l~~~~~l~~~ 121 (430)
..+++|++|+++++. +....... ++ ...+++|++|+++++. +....+..+...++ +|++|++++|. +...
T Consensus 25 ~~~~~L~~L~L~~~~-l~~~~~~~-l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~ 100 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCG-LTEARCKD-ISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGA 100 (461)
T ss_dssp HHHTTCSEEEEESSC-CCHHHHHH-HHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGG
T ss_pred hhcCCccEEEccCCC-CCHHHHHH-HHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCC-CCHH
Confidence 356788888888776 54211000 00 1346788888888863 44333334455566 68888888874 3321
Q ss_pred cccccccCCccCcCCcCCccceeecCCccccccc-cCC--ccccccCCCccEEEeccCCCccccc----------CCCce
Q 014145 122 LHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF-CNF--TENIIEMPELRYLAIENCPDMETFI----------SNSVV 188 (430)
Q Consensus 122 ~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~-~~~--~~~~~~~~~L~~L~l~~c~~l~~~~----------~~~L~ 188 (430)
+....+.. +..+++|++|+++++. +... +.. .......++|++|++.+|. ++... .++|+
T Consensus 101 ----~~~~l~~~-l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~ 173 (461)
T 1z7x_W 101 ----GCGVLSST-LRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFK 173 (461)
T ss_dssp ----GHHHHHHH-TTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCC
T ss_pred ----HHHHHHHH-HccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCC
Confidence 11111222 3677888888888764 3221 000 0001124578888888875 44321 46888
Q ss_pred EEEecCCCCCcccCCCceeeecCcccccccC-CCCCCCCEEecccCCCceeeccCC-chhhhhcccccEEEeecCCCccc
Q 014145 189 HVTTDNKEPEKLTSEENFFLTDQIQPLFDEK-VAFPQLRYLELSRLHKVQHLWKEN-DESNKAFANLIRLKISECSKLQK 266 (430)
Q Consensus 189 ~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~ 266 (430)
+|++++|.+..... ..+.... ...++|++|++++| .++...... ......+++|++|+++++..-..
T Consensus 174 ~L~L~~n~i~~~~~----------~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 174 ELTVSNNDINEAGV----------RVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp EEECCSSBCHHHHH----------HHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred EEECcCCCcchHHH----------HHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 88888887543210 0000001 13568999999987 444321000 11115678999999998743221
Q ss_pred ----ccCC-cccCCCCCEEEEccCCCcccccC---chhhccccccceEeeccccccchhhcccccccCCcc-eeecccce
Q 014145 267 ----LVTP-SWHLENLATLEVSKCHGLINVLT---LSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGC-VVFEELGY 337 (430)
Q Consensus 267 ----l~~~-l~~l~~L~~L~l~~c~~l~~l~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~-~~~~~L~~ 337 (430)
+... ...+++|++|++++| .++.... ...+..+++|++|+++++. +.+..... ..... ...++|++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~---l~~~l~~~~~~L~~ 317 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARL---LCETLLEPGCQLES 317 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHH---HHHHHTSTTCCCCE
T ss_pred HHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHH---HHHHhccCCcccee
Confidence 1111 225789999999998 4555211 1134567899999999874 33221100 00000 01368999
Q ss_pred EeccCCCCCceecc---CCcccCCCCccEEeeccCCCCcccC-----CCCc-CCCCceeeeccccC
Q 014145 338 LGLDCLPSLTSFCL---GNYALEFPSLEHVVVRQCPTMKIFS-----QGVV-DAPKLNKVKPTEEE 394 (430)
Q Consensus 338 L~l~~c~~L~~~~~---~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~~-~~~~L~~l~l~~~~ 394 (430)
|++.+|. ++.... ......+++|++|++++| .++... .... ..++|++|++.++.
T Consensus 318 L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 318 LWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp EECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred eEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 9999985 443321 011224689999999998 443321 1111 26799999997763
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.48 E-value=8.7e-13 Score=122.03 Aligned_cols=191 Identities=15% Similarity=0.173 Sum_probs=124.7
Q ss_pred hhhhhh-cccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 40 IQKCYE-EMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 40 ~~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
+..++. .+..+++|++|+++++. +..+.... ...+++|++|+++++ .+....+. .+.++++|++|++++|. +
T Consensus 40 l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~-l 112 (276)
T 2z62_A 40 LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGA---YQSLSHLSTLILTGN-PIQSLALG-AFSGLSSLQKLVAVETN-L 112 (276)
T ss_dssp CCEECTTTTTTCTTCSEEECTTCC-CCEECTTT---TTTCTTCCEEECTTC-CCCEECTT-TTTTCTTCCEEECTTSC-C
T ss_pred ccccCHhHhccccCCcEEECCCCc-CCccCHHH---ccCCcCCCEEECCCC-ccCccChh-hhcCCccccEEECCCCC-c
Confidence 444443 45678999999999886 77654322 256899999999997 45554443 37789999999999984 5
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCcccccc--ccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCC
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKR--FCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKE 196 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~ 196 (430)
..+ +...+..+++|++|+++++. +.. ++.. +..+++|++|++.+|. ++..++..+
T Consensus 113 ~~~---------~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~---~~~l~~L~~L~Ls~N~-l~~~~~~~~--------- 169 (276)
T 2z62_A 113 ASL---------ENFPIGHLKTLKELNVAHNL-IQSFKLPEY---FSNLTNLEHLDLSSNK-IQSIYCTDL--------- 169 (276)
T ss_dssp CCS---------TTCCCTTCTTCCEEECCSSC-CCCCCCCGG---GGGCTTCCEEECCSSC-CCEECGGGG---------
T ss_pred ccc---------CchhcccCCCCCEEECcCCc-cceecCchh---hccCCCCCEEECCCCC-CCcCCHHHh---------
Confidence 444 23234788999999999864 443 3332 6778899999988875 444332111
Q ss_pred CCcccCCCceeeecCcccccccCCCCCCCC-EEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCC-cccC
Q 014145 197 PEKLTSEENFFLTDQIQPLFDEKVAFPQLR-YLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHL 274 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-l~~l 274 (430)
.....++.|. +|+++++ .++.+....+ ...+|+.|+++++. ++.++.. +..+
T Consensus 170 --------------------~~l~~L~~l~l~L~ls~n-~l~~~~~~~~----~~~~L~~L~L~~n~-l~~~~~~~~~~l 223 (276)
T 2z62_A 170 --------------------RVLHQMPLLNLSLDLSLN-PMNFIQPGAF----KEIRLKELALDTNQ-LKSVPDGIFDRL 223 (276)
T ss_dssp --------------------HHHHTCTTCCEEEECCSS-CCCEECTTSS----CSCCEEEEECCSSC-CSCCCTTTTTTC
T ss_pred --------------------hhhhhccccceeeecCCC-cccccCcccc----CCCcccEEECCCCc-eeecCHhHhccc
Confidence 1111222333 6777764 5666554443 22378888888764 5555544 3567
Q ss_pred CCCCEEEEccCC
Q 014145 275 ENLATLEVSKCH 286 (430)
Q Consensus 275 ~~L~~L~l~~c~ 286 (430)
++|+.|++++++
T Consensus 224 ~~L~~L~l~~N~ 235 (276)
T 2z62_A 224 TSLQKIWLHTNP 235 (276)
T ss_dssp CSCCEEECCSSC
T ss_pred ccccEEEccCCc
Confidence 888888888653
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.48 E-value=7.4e-13 Score=122.19 Aligned_cols=189 Identities=20% Similarity=0.206 Sum_probs=132.5
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
.+..+|..+. ++|++|+++++. +..+.... ...+++|++|+++++ .+..+ +...+..+++|++|++++|. +
T Consensus 27 ~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n-~l~~i-~~~~~~~l~~L~~L~l~~n~-l 97 (270)
T 2o6q_A 27 KLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKA---FHRLTKLRLLYLNDN-KLQTL-PAGIFKELKNLETLWVTDNK-L 97 (270)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSC-CSCCCTTS---SSSCTTCCEEECCSS-CCSCC-CTTTTSSCTTCCEEECCSSC-C
T ss_pred CCCccCCCCC--CCCCEEECcCCC-CCeeCHHH---hcCCCCCCEEECCCC-ccCee-ChhhhcCCCCCCEEECCCCc-C
Confidence 3445555432 589999999887 66543322 257899999999997 45554 44446789999999999984 6
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCC
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPE 198 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~ 198 (430)
..+ +...+..+++|++|+++++ .+..++.. .+..+++|++|++.++. ++.+++
T Consensus 98 ~~~---------~~~~~~~l~~L~~L~l~~n-~l~~~~~~--~~~~l~~L~~L~Ls~n~-l~~~~~-------------- 150 (270)
T 2o6q_A 98 QAL---------PIGVFDQLVNLAELRLDRN-QLKSLPPR--VFDSLTKLTYLSLGYNE-LQSLPK-------------- 150 (270)
T ss_dssp CCC---------CTTTTTTCSSCCEEECCSS-CCCCCCTT--TTTTCTTCCEEECCSSC-CCCCCT--------------
T ss_pred CcC---------CHhHcccccCCCEEECCCC-ccCeeCHH--HhCcCcCCCEEECCCCc-CCccCH--------------
Confidence 555 5555688999999999986 45555332 14678888888888774 443322
Q ss_pred cccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCC-cccCCCC
Q 014145 199 KLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENL 277 (430)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L 277 (430)
.....+++|++|+++++ .++.+....+ ..+++|+.|+++++ .+..++.. +..+++|
T Consensus 151 ------------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 151 ------------------GVFDKLTSLKELRLYNN-QLKRVPEGAF---DKLTELKTLKLDNN-QLKRVPEGAFDSLEKL 207 (270)
T ss_dssp ------------------TTTTTCTTCCEEECCSS-CCSCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred ------------------hHccCCcccceeEecCC-cCcEeChhHh---ccCCCcCEEECCCC-cCCcCCHHHhccccCC
Confidence 11356778888888875 5666655555 67788889988886 45555543 5578889
Q ss_pred CEEEEccCC
Q 014145 278 ATLEVSKCH 286 (430)
Q Consensus 278 ~~L~l~~c~ 286 (430)
+.|++++++
T Consensus 208 ~~L~l~~N~ 216 (270)
T 2o6q_A 208 KMLQLQENP 216 (270)
T ss_dssp CEEECCSSC
T ss_pred CEEEecCCC
Confidence 999988764
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.47 E-value=3.7e-14 Score=135.10 Aligned_cols=245 Identities=14% Similarity=0.067 Sum_probs=137.8
Q ss_pred CcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhc--CCCCEEEEecCCCccEecccccccC
Q 014145 52 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCL--NNLRWLEVRNCDSLEEVLHLEELNA 129 (430)
Q Consensus 52 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l--~~L~~L~l~~~~~l~~~~~~~~~~~ 129 (430)
.|..-++..+..+..-|... . ..-..++.++++++. +. + ..+..+ ++++.|+++++. +...
T Consensus 23 ~L~~~d~~~~~~vc~~W~~~-~--~~~~~~~~l~l~~~~-~~---~-~~~~~~~~~~l~~L~l~~n~-l~~~-------- 85 (336)
T 2ast_B 23 CLCLPELLKVSGVCKRWYRL-A--SDESLWQTLDLTGKN-LH---P-DVTGRLLSQGVIAFRCPRSF-MDQP-------- 85 (336)
T ss_dssp TSCHHHHHHTTSSCHHHHHH-H--TCSTTSSEEECTTCB-CC---H-HHHHHHHHTTCSEEECTTCE-ECSC--------
T ss_pred hCCHHHHHHHHHHHHHHHHH-h--cCchhheeecccccc-CC---H-HHHHhhhhccceEEEcCCcc-cccc--------
Confidence 44444444455455456554 1 112347888888753 22 2 335566 889999988874 3333
Q ss_pred CccCcCCcCCccceeecCCcccccc-ccCCccccccCCCccEEEeccCCCccccc------CCCceEEEecCC-CCCccc
Q 014145 130 DKEHIGPLFPKLFELTLMDLPKLKR-FCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNK-EPEKLT 201 (430)
Q Consensus 130 ~~~~l~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~-~~~~~~ 201 (430)
+..+ ..+++|++|+++++..... ++.. +..+++|++|++.+|. ++... .++|++|++++| .+....
T Consensus 86 -~~~~-~~~~~L~~L~L~~~~l~~~~~~~~---~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~ 159 (336)
T 2ast_B 86 -LAEH-FSPFRVQHMDLSNSVIEVSTLHGI---LSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 159 (336)
T ss_dssp -CCSC-CCCBCCCEEECTTCEECHHHHHHH---HTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHH
T ss_pred -chhh-ccCCCCCEEEccCCCcCHHHHHHH---HhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHH
Confidence 2233 5678999999988753222 3322 5678889999988885 44211 456677777766 333210
Q ss_pred CCCceeeecCcccccccCCCCCCCCEEecccCCCceeec-cCCchhhhhcc-cccEEEeecCC-Cc--ccccCCcccCCC
Q 014145 202 SEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLW-KENDESNKAFA-NLIRLKISECS-KL--QKLVTPSWHLEN 276 (430)
Q Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~l~-~L~~L~l~~c~-~l--~~l~~~l~~l~~ 276 (430)
+......+++|++|++++|..++... ...+ ..++ +|++|++++|. .+ ..++..+..+++
T Consensus 160 -------------l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~---~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 223 (336)
T 2ast_B 160 -------------LQTLLSSCSRLDELNLSWCFDFTEKHVQVAV---AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 223 (336)
T ss_dssp -------------HHHHHHHCTTCCEEECCCCTTCCHHHHHHHH---HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT
T ss_pred -------------HHHHHhcCCCCCEEcCCCCCCcChHHHHHHH---HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCC
Confidence 00113456777777777764554321 1111 5566 77777777764 22 234444456777
Q ss_pred CCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCC
Q 014145 277 LATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCL 343 (430)
Q Consensus 277 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 343 (430)
|++|++++|..+++.... .+..+++|++|++++|..+..... .....+++|++|++.+|
T Consensus 224 L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-------~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 224 LVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETL-------LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGG-------GGGGGCTTCCEEECTTS
T ss_pred CCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHH-------HHHhcCCCCCEEeccCc
Confidence 777777777655432222 245667777777777753322110 01122677777777776
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.44 E-value=4.8e-14 Score=133.06 Aligned_cols=108 Identities=18% Similarity=0.111 Sum_probs=60.8
Q ss_pred CCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCccccc-CCcccCCCCCEEEEccCCCcccccCchhhc
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TPSWHLENLATLEVSKCHGLINVLTLSTSE 298 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~ 298 (430)
+.+++|++|+++++ .++.+..........+++|+.|+++++......| .....+++|++|+++++. ++.++.. +.
T Consensus 198 ~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~--~~ 273 (312)
T 1wwl_A 198 LKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKG--LP 273 (312)
T ss_dssp TSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSS--CC
T ss_pred ccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhh--cc
Confidence 56677788888775 4443211111111345778888887764333232 233456778888887763 5555532 12
Q ss_pred cccccceEeeccccccchhhcccccccCCcceeecccceEeccCC
Q 014145 299 SLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCL 343 (430)
Q Consensus 299 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 343 (430)
++|++|+++++. +..++ ....+++|++|++.+.
T Consensus 274 --~~L~~L~Ls~N~-l~~~p---------~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 274 --AKLSVLDLSYNR-LDRNP---------SPDELPQVGNLSLKGN 306 (312)
T ss_dssp --SEEEEEECCSSC-CCSCC---------CTTTSCEEEEEECTTC
T ss_pred --CCceEEECCCCC-CCCCh---------hHhhCCCCCEEeccCC
Confidence 677888887753 33332 1223677777877764
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.42 E-value=2e-12 Score=121.89 Aligned_cols=198 Identities=17% Similarity=0.173 Sum_probs=108.5
Q ss_pred CCCcceEEEeCCCCCCccCchhH-HHhcCCCCEEEEecCCCccEecccccccCCccCcCCcC-----CccceeecCCccc
Q 014145 78 FNNLRHLVVDDCTNMLSAIPANL-IRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLF-----PKLFELTLMDLPK 151 (430)
Q Consensus 78 l~~L~~L~l~~c~~l~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l-----~~L~~L~l~~~~~ 151 (430)
+++|++|++++|. +....|..+ +..+++|++|++++|. +..+ |..+ ..+ ++|++|+++++.
T Consensus 94 l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~---------~~~~-~~l~~~~~~~L~~L~L~~N~- 160 (312)
T 1wwl_A 94 ISGLQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNVS-WATR---------DAWL-AELQQWLKPGLKVLSIAQAH- 160 (312)
T ss_dssp TSCCCEEEEEEEB-CBSCCCCCSSSCCSCCCSEEEEESCB-CSSS---------SSHH-HHHHTTCCTTCCEEEEESCS-
T ss_pred cCCccEEEccCCc-ccchhHHHHHHhcCCCccEEEccCCC-Ccch---------hHHH-HHHHHhhcCCCcEEEeeCCC-
Confidence 5566666666653 332233321 1456666666666652 3322 1111 222 566666666542
Q ss_pred cccccCCccccccCCCccEEEeccCCCccc---------ccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCC
Q 014145 152 LKRFCNFTENIIEMPELRYLAIENCPDMET---------FISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAF 222 (430)
Q Consensus 152 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~---------~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 222 (430)
+..++.. .+..+++|++|++.++..... -..++|++|++++|.+..+..+ .......+
T Consensus 161 l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----------~~~~~~~l 227 (312)
T 1wwl_A 161 SLNFSCE--QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV-----------CSALAAAR 227 (312)
T ss_dssp CCCCCTT--TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHH-----------HHHHHHTT
T ss_pred CccchHH--HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHH-----------HHHHHhcC
Confidence 3333211 144566666666666552211 1134666666666665532100 00011356
Q ss_pred CCCCEEecccCCCceeecc-CCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhcccc
Q 014145 223 PQLRYLELSRLHKVQHLWK-ENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLV 301 (430)
Q Consensus 223 ~~L~~L~l~~~~~l~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 301 (430)
++|++|+++++ .++...+ ..+ ..+++|+.|+++++ .++.+|..+. ++|++|+++++ .++.++. +..++
T Consensus 228 ~~L~~L~Ls~N-~l~~~~~~~~~---~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~---~~~l~ 296 (312)
T 1wwl_A 228 VQLQGLDLSHN-SLRDAAGAPSC---DWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPS---PDELP 296 (312)
T ss_dssp CCCSEEECTTS-CCCSSCCCSCC---CCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCC---TTTSC
T ss_pred CCCCEEECCCC-cCCcccchhhh---hhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChh---HhhCC
Confidence 78888888875 4554331 222 45678888888886 4557776554 78888888886 4666643 56778
Q ss_pred ccceEeecccc
Q 014145 302 NLGRMKIADCK 312 (430)
Q Consensus 302 ~L~~L~l~~c~ 312 (430)
+|++|++++++
T Consensus 297 ~L~~L~L~~N~ 307 (312)
T 1wwl_A 297 QVGNLSLKGNP 307 (312)
T ss_dssp EEEEEECTTCT
T ss_pred CCCEEeccCCC
Confidence 88888888754
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.42 E-value=5.3e-12 Score=117.75 Aligned_cols=200 Identities=18% Similarity=0.137 Sum_probs=140.8
Q ss_pred CCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccc
Q 014145 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~ 155 (430)
..+++++.++++++ ++..+++ .+ .+++++|++++|. +..+ +...+..+++|++|+++++ .+..+
T Consensus 7 ~~l~~l~~l~~~~~-~l~~ip~-~~---~~~l~~L~L~~N~-l~~~---------~~~~~~~l~~L~~L~L~~n-~l~~~ 70 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTALPP-DL---PKDTTILHLSENL-LYTF---------SLATLMPYTRLTQLNLDRA-ELTKL 70 (290)
T ss_dssp ECSTTCCEEECTTS-CCSSCCS-CC---CTTCCEEECTTSC-CSEE---------EGGGGTTCTTCCEEECTTS-CCCEE
T ss_pred cccCCccEEECCCC-CCCcCCC-CC---CCCCCEEEcCCCc-CCcc---------CHHHhhcCCCCCEEECCCC-ccCcc
Confidence 46788899988876 5666443 22 3679999999884 5555 2333477889999999885 45555
Q ss_pred cCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCC
Q 014145 156 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK 235 (430)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 235 (430)
+. ...+++|++|++.++. ++ .+. .....+++|+.|+++++ .
T Consensus 71 ~~----~~~l~~L~~L~Ls~N~-l~------------------~l~---------------~~~~~l~~L~~L~l~~N-~ 111 (290)
T 1p9a_G 71 QV----DGTLPVLGTLDLSHNQ-LQ------------------SLP---------------LLGQTLPALTVLDVSFN-R 111 (290)
T ss_dssp EC----CSCCTTCCEEECCSSC-CS------------------SCC---------------CCTTTCTTCCEEECCSS-C
T ss_pred cC----CCCCCcCCEEECCCCc-CC------------------cCc---------------hhhccCCCCCEEECCCC-c
Confidence 43 2456667777666654 32 222 12467889999999985 7
Q ss_pred ceeeccCCchhhhhcccccEEEeecCCCcccccCC-cccCCCCCEEEEccCCCcccccCchhhccccccceEeecccccc
Q 014145 236 VQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMI 314 (430)
Q Consensus 236 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l 314 (430)
++.+....+ ..+++|+.|+++++ .+..++.. +..+++|+.|+++++ .+..++.. .+..+++|++|+++++. +
T Consensus 112 l~~l~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~L~~N~-l 184 (290)
T 1p9a_G 112 LTSLPLGAL---RGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPAG-LLNGLENLDTLLLQENS-L 184 (290)
T ss_dssp CCCCCSSTT---TTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTT-TTTTCTTCCEEECCSSC-C
T ss_pred CcccCHHHH---cCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC-cCCccCHH-HhcCcCCCCEEECCCCc-C
Confidence 787776666 88999999999997 45666554 468899999999986 57777653 35678999999998864 4
Q ss_pred chhhcccccccCCcceeecccceEeccCCCC
Q 014145 315 EQIIQLQVGEEAKGCVVFEELGYLGLDCLPS 345 (430)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 345 (430)
..++. .....++|+.|.+.+.|-
T Consensus 185 ~~ip~--------~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 185 YTIPK--------GFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCCCT--------TTTTTCCCSEEECCSCCB
T ss_pred CccCh--------hhcccccCCeEEeCCCCc
Confidence 44431 222356899999987653
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.41 E-value=6.4e-14 Score=136.26 Aligned_cols=268 Identities=12% Similarity=0.072 Sum_probs=141.3
Q ss_pred ccceeecccccchhhhhhhcccCCCCcceeecccccCCeeeccCC-CCCCCCCCCcceEEEeCCC--CCCccCchhH---
Q 014145 27 GELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQ-ALPVSFFNNLRHLVVDDCT--NMLSAIPANL--- 100 (430)
Q Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~~l~~L~~L~l~~c~--~l~~~~~~~~--- 100 (430)
...++|.+-.+..+..++..+..+++|++|+++++. +....... ......+++|++|++++|. .+....|.++
T Consensus 8 ~~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l 86 (386)
T 2ca6_A 8 GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL 86 (386)
T ss_dssp TCCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHH
T ss_pred CcccccCCCCHHHHHHHHHHHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHH
Confidence 344555554556677787778888999999999886 54321100 0012468999999999973 2332334332
Q ss_pred ---HHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCcccccccc-CC-ccccccC---------C
Q 014145 101 ---IRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC-NF-TENIIEM---------P 166 (430)
Q Consensus 101 ---~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~-~~-~~~~~~~---------~ 166 (430)
+..+++|++|++++|. +... +....+..+ ..+++|++|++++|.. .... .. ...+..+ +
T Consensus 87 ~~~l~~~~~L~~L~Ls~n~-l~~~----~~~~l~~~l-~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~ 159 (386)
T 2ca6_A 87 LQALLKCPKLHTVRLSDNA-FGPT----AQEPLIDFL-SKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAP 159 (386)
T ss_dssp HHHHTTCTTCCEEECCSCC-CCTT----THHHHHHHH-HHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhhCCcccEEECCCCc-CCHH----HHHHHHHHH-HhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCC
Confidence 3678999999999984 3220 111112333 6678888888888643 2110 00 0001222 6
Q ss_pred CccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCcee-----ecc
Q 014145 167 ELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQH-----LWK 241 (430)
Q Consensus 167 ~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~ 241 (430)
+|++|.+.+|. ++... +. .+......+++|++|+++++ .++. +.+
T Consensus 160 ~L~~L~L~~n~-l~~~~----------------~~------------~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~ 209 (386)
T 2ca6_A 160 PLRSIICGRNR-LENGS----------------MK------------EWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLL 209 (386)
T ss_dssp CCCEEECCSSC-CTGGG----------------HH------------HHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHH
T ss_pred CCcEEECCCCC-CCcHH----------------HH------------HHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHH
Confidence 66666666654 32110 00 00011234556666666664 3331 111
Q ss_pred CCchhhhhcccccEEEeecCCCc----ccccCCcccCCCCCEEEEccCCCcccccCch---hh--ccccccceEeecccc
Q 014145 242 ENDESNKAFANLIRLKISECSKL----QKLVTPSWHLENLATLEVSKCHGLINVLTLS---TS--ESLVNLGRMKIADCK 312 (430)
Q Consensus 242 ~~~~~~~~l~~L~~L~l~~c~~l----~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~---~~--~~l~~L~~L~l~~c~ 312 (430)
..+ ..+++|+.|+++++..- ..++..+..+++|++|++++|. +....... .+ +.+++|++|++++|.
T Consensus 210 ~~l---~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 210 EGL---AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp TTG---GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred HHh---hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 122 45666777777665432 3445555566677777777664 33321100 11 225667777777664
Q ss_pred ccc----hhhcccccccCCcc-eeecccceEeccCCC
Q 014145 313 MIE----QIIQLQVGEEAKGC-VVFEELGYLGLDCLP 344 (430)
Q Consensus 313 ~l~----~~~~~~~~~~~~~~-~~~~~L~~L~l~~c~ 344 (430)
.-. .++. .. ..+++|++|++.+++
T Consensus 286 i~~~g~~~l~~--------~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 286 IELDAVRTLKT--------VIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CBHHHHHHHHH--------HHHHHCTTCCEEECTTSB
T ss_pred CCHHHHHHHHH--------HHHhcCCCceEEEccCCc
Confidence 322 1221 11 125677777777653
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.36 E-value=1.3e-11 Score=113.92 Aligned_cols=178 Identities=21% Similarity=0.235 Sum_probs=97.5
Q ss_pred CCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccc
Q 014145 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~ 155 (430)
..+++|+.|+++++. +... +. +..+++|++|++++|. +..+ .. +..+++|++|+++++ .+..+
T Consensus 38 ~~l~~L~~L~l~~~~-i~~~-~~--l~~l~~L~~L~l~~n~-l~~~----------~~-l~~l~~L~~L~L~~n-~l~~~ 100 (272)
T 3rfs_A 38 NELNSIDQIIANNSD-IKSV-QG--IQYLPNVRYLALGGNK-LHDI----------SA-LKELTNLTYLILTGN-QLQSL 100 (272)
T ss_dssp HHHTTCCEEECTTSC-CCCC-TT--GGGCTTCCEEECTTSC-CCCC----------GG-GTTCTTCCEEECTTS-CCCCC
T ss_pred ccccceeeeeeCCCC-cccc-cc--cccCCCCcEEECCCCC-CCCc----------hh-hcCCCCCCEEECCCC-ccCcc
Confidence 356777777777753 3332 21 4567777777777763 3332 12 255667777777665 33333
Q ss_pred cCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCC
Q 014145 156 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK 235 (430)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 235 (430)
+.. .+..+++|++|++.+|. ++..++ ...+.+++|++|+++++ .
T Consensus 101 ~~~--~~~~l~~L~~L~L~~n~-l~~~~~--------------------------------~~~~~l~~L~~L~L~~n-~ 144 (272)
T 3rfs_A 101 PNG--VFDKLTNLKELVLVENQ-LQSLPD--------------------------------GVFDKLTNLTYLNLAHN-Q 144 (272)
T ss_dssp CTT--TTTTCTTCCEEECTTSC-CCCCCT--------------------------------TTTTTCTTCCEEECCSS-C
T ss_pred Chh--HhcCCcCCCEEECCCCc-CCccCH--------------------------------HHhccCCCCCEEECCCC-c
Confidence 221 13455566666665553 222211 11245667777777775 5
Q ss_pred ceeeccCCchhhhhcccccEEEeecCCCcccccCC-cccCCCCCEEEEccCCCcccccCchhhccccccceEeecccc
Q 014145 236 VQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 236 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 312 (430)
++.+....+ ..+++|+.|+++++. +..++.. +..+++|+.|++++|. +..++.. .+..+++|++|++++++
T Consensus 145 l~~~~~~~~---~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 145 LQSLPKGVF---DKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDG-VFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CCCCCTTTT---TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred cCccCHHHh---ccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCc-CCccCHH-HHhCCcCCCEEEccCCC
Confidence 555544444 566777777777763 3444332 3566677777777653 4444332 23456666666666543
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.36 E-value=8.2e-12 Score=117.58 Aligned_cols=85 Identities=16% Similarity=0.094 Sum_probs=53.3
Q ss_pred CCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhcc
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSES 299 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 299 (430)
+.+++|++|+++++ .++...+..+.....+++|++|+++++ .++.+|..+. ++|+.|+++++ .+..++. ...
T Consensus 221 ~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~---~~~ 292 (310)
T 4glp_A 221 AAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSN-RLNRAPQ---PDE 292 (310)
T ss_dssp HHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSC-CCCSCCC---TTS
T ss_pred hcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCC-cCCCCch---hhh
Confidence 34577777887774 455543332311122368888888775 4556665543 68888888876 4555543 466
Q ss_pred ccccceEeecccc
Q 014145 300 LVNLGRMKIADCK 312 (430)
Q Consensus 300 l~~L~~L~l~~c~ 312 (430)
+++|+.|++++++
T Consensus 293 l~~L~~L~L~~N~ 305 (310)
T 4glp_A 293 LPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCSCEECSSTT
T ss_pred CCCccEEECcCCC
Confidence 7888888887754
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.34 E-value=1.7e-11 Score=111.76 Aligned_cols=174 Identities=17% Similarity=0.140 Sum_probs=85.7
Q ss_pred CcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCc
Q 014145 52 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 131 (430)
Q Consensus 52 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 131 (430)
+.+++++++.. ++.++. ...++++.|+++++ .+..+.+. .+.++++|++|++++| .+..+ +
T Consensus 15 ~~~~l~~~~~~-l~~~p~------~~~~~l~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~---------~ 75 (251)
T 3m19_A 15 GKKEVDCQGKS-LDSVPS------GIPADTEKLDLQST-GLATLSDA-TFRGLTKLTWLNLDYN-QLQTL---------S 75 (251)
T ss_dssp GGTEEECTTCC-CSSCCS------CCCTTCCEEECTTS-CCCCCCTT-TTTTCTTCCEEECTTS-CCCCC---------C
T ss_pred CCeEEecCCCC-ccccCC------CCCCCCCEEEccCC-CcCccCHh-HhcCcccCCEEECCCC-cCCcc---------C
Confidence 34556655444 444222 22356677777665 34443332 2556677777777766 34443 2
Q ss_pred cCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecC
Q 014145 132 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQ 211 (430)
Q Consensus 132 ~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 211 (430)
...+..+++|++|+++++ .+..++.. .+..+++|++|++.++. ++.+++
T Consensus 76 ~~~~~~l~~L~~L~L~~n-~l~~~~~~--~~~~l~~L~~L~L~~N~-l~~~~~--------------------------- 124 (251)
T 3m19_A 76 AGVFDDLTELGTLGLANN-QLASLPLG--VFDHLTQLDKLYLGGNQ-LKSLPS--------------------------- 124 (251)
T ss_dssp TTTTTTCTTCCEEECTTS-CCCCCCTT--TTTTCTTCCEEECCSSC-CCCCCT---------------------------
T ss_pred HhHhccCCcCCEEECCCC-cccccChh--HhcccCCCCEEEcCCCc-CCCcCh---------------------------
Confidence 333456666666666664 33333221 13345555555555542 222211
Q ss_pred cccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccC-CcccCCCCCEEEEccC
Q 014145 212 IQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKC 285 (430)
Q Consensus 212 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c 285 (430)
.....+++|+.|+++++ .++.+....+ ..+++|+.|+++++. +..++. .+..+++|+.|+++++
T Consensus 125 -----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 125 -----GVFDRLTKLKELRLNTN-QLQSIPAGAF---DKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp -----TTTTTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred -----hHhccCCcccEEECcCC-cCCccCHHHc---CcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCC
Confidence 01234556666666653 4554444333 455566666666542 333332 3445555666666554
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.29 E-value=2.8e-11 Score=112.90 Aligned_cols=169 Identities=20% Similarity=0.270 Sum_probs=115.6
Q ss_pred CCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccc
Q 014145 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~ 155 (430)
..+++|+.|++++| .+..+.. +..+++|++|++++| .+..+ +. +..+++|+.|+++++ .+..+
T Consensus 43 ~~l~~L~~L~l~~~-~i~~~~~---~~~l~~L~~L~L~~n-~l~~~---------~~--l~~l~~L~~L~l~~n-~l~~~ 105 (291)
T 1h6t_A 43 NELNSIDQIIANNS-DIKSVQG---IQYLPNVTKLFLNGN-KLTDI---------KP--LANLKNLGWLFLDEN-KVKDL 105 (291)
T ss_dssp HHHHTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCC---------GG--GTTCTTCCEEECCSS-CCCCG
T ss_pred hhcCcccEEEccCC-CcccChh---HhcCCCCCEEEccCC-ccCCC---------cc--cccCCCCCEEECCCC-cCCCC
Confidence 46889999999998 4555432 567999999999998 45554 22 378899999999986 45555
Q ss_pred cCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCC
Q 014145 156 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK 235 (430)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 235 (430)
+. +..+++|++|++.+|. ++.+ .....+++|+.|+++++ .
T Consensus 106 ~~----l~~l~~L~~L~L~~n~-i~~~----------------------------------~~l~~l~~L~~L~l~~n-~ 145 (291)
T 1h6t_A 106 SS----LKDLKKLKSLSLEHNG-ISDI----------------------------------NGLVHLPQLESLYLGNN-K 145 (291)
T ss_dssp GG----GTTCTTCCEEECTTSC-CCCC----------------------------------GGGGGCTTCCEEECCSS-C
T ss_pred hh----hccCCCCCEEECCCCc-CCCC----------------------------------hhhcCCCCCCEEEccCC-c
Confidence 43 6677888888887765 3322 12345677788888775 4
Q ss_pred ceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeecccc
Q 014145 236 VQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 236 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 312 (430)
++.+ ..+ ..+++|+.|+++++ .+..++. +..+++|+.|++++| .+.+++. +..+++|+.|++++++
T Consensus 146 l~~~--~~l---~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~---l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 146 ITDI--TVL---SRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCCC--GGG---GGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEEEEEEE
T ss_pred CCcc--hhh---ccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCC-cCCCChh---hccCCCCCEEECcCCc
Confidence 5544 222 67778888888776 3444443 667778888888776 4555543 5667788888887764
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.26 E-value=2.8e-11 Score=106.06 Aligned_cols=59 Identities=12% Similarity=0.164 Sum_probs=28.7
Q ss_pred hhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccc
Q 014145 248 KAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c 311 (430)
..+++|+.|++++|..+..++ .+..+++|+.|++++|. +.+++ .+..+++|++|+++++
T Consensus 133 ~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~---~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 133 NTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR---GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp TTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT---TGGGCSSCCEEEECBC
T ss_pred hhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH---HhccCCCCCEEEeeCc
Confidence 344555555555543344443 34455555555555542 33333 1345555666666543
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.26 E-value=4.3e-11 Score=111.60 Aligned_cols=168 Identities=18% Similarity=0.279 Sum_probs=117.6
Q ss_pred CCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccccc
Q 014145 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 128 (430)
.+++|+.|+++++. +..+. +. ..+++|+.|++++| .+..+.+ +..+++|++|++++|. +..+
T Consensus 44 ~l~~L~~L~l~~~~-i~~~~-~~----~~l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~------- 105 (291)
T 1h6t_A 44 ELNSIDQIIANNSD-IKSVQ-GI----QYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDENK-VKDL------- 105 (291)
T ss_dssp HHHTCCEEECTTSC-CCCCT-TG----GGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCG-------
T ss_pred hcCcccEEEccCCC-cccCh-hH----hcCCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCCCc-CCCC-------
Confidence 46789999999886 66542 22 57899999999998 4666444 6789999999999984 5554
Q ss_pred CCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceee
Q 014145 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFL 208 (430)
Q Consensus 129 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 208 (430)
.. +..+++|++|+++++ .+..++. +..+++|++|++.+|. ++.+
T Consensus 106 ---~~-l~~l~~L~~L~L~~n-~i~~~~~----l~~l~~L~~L~l~~n~-l~~~-------------------------- 149 (291)
T 1h6t_A 106 ---SS-LKDLKKLKSLSLEHN-GISDING----LVHLPQLESLYLGNNK-ITDI-------------------------- 149 (291)
T ss_dssp ---GG-GTTCTTCCEEECTTS-CCCCCGG----GGGCTTCCEEECCSSC-CCCC--------------------------
T ss_pred ---hh-hccCCCCCEEECCCC-cCCCChh----hcCCCCCCEEEccCCc-CCcc--------------------------
Confidence 22 378899999999997 4555532 6778888888888775 3322
Q ss_pred ecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCC
Q 014145 209 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCH 286 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~ 286 (430)
.....+++|+.|+++++ .++.+.. + ..+++|+.|+++++ .++.++ .+..+++|+.|++++++
T Consensus 150 --------~~l~~l~~L~~L~L~~N-~l~~~~~--l---~~l~~L~~L~L~~N-~i~~l~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 150 --------TVLSRLTKLDTLSLEDN-QISDIVP--L---AGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp --------GGGGGCTTCSEEECCSS-CCCCCGG--G---TTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEEEEEEE
T ss_pred --------hhhccCCCCCEEEccCC-ccccchh--h---cCCCccCEEECCCC-cCCCCh-hhccCCCCCEEECcCCc
Confidence 12345667777777764 4555432 2 66777777777775 445554 35677777888777753
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.26 E-value=4.5e-12 Score=119.38 Aligned_cols=229 Identities=15% Similarity=0.063 Sum_probs=137.4
Q ss_pred CCcceEEEeCCCCCCccCchh--HHHhcCCCCEEEEecCCCccEecccccccCCccCcC-CcCCccceeecCCccccccc
Q 014145 79 NNLRHLVVDDCTNMLSAIPAN--LIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIG-PLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~-~~l~~L~~L~l~~~~~l~~~ 155 (430)
..++.+.+.++. +....... -.-.+++|++|++++|...... |..++ ..+++|++|+++++......
T Consensus 64 ~~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~---------~~~~~~~~~~~L~~L~Ls~n~i~~~~ 133 (310)
T 4glp_A 64 LRVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDLKITGTM---------PPLPLEATGLALSSLRLRNVSWATGR 133 (310)
T ss_dssp CCCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESCCCBSCC---------CCCSSSCCCBCCSSCEEESCCCSSTT
T ss_pred cceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCCEeccch---------hhhhhhccCCCCCEEEeecccccchh
Confidence 346777777653 22111011 1223566888888887432222 23322 66778888888876433222
Q ss_pred cCCc-cccccCCCccEEEeccCCCccccc------CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEE
Q 014145 156 CNFT-ENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYL 228 (430)
Q Consensus 156 ~~~~-~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L 228 (430)
+... .....+++|++|++.+|. ++..+ .++|+.|++++|.+.+...+ ......+.+++|++|
T Consensus 134 ~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------~~~~~~~~l~~L~~L 202 (310)
T 4glp_A 134 SWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGL----------MAALCPHKFPAIQNL 202 (310)
T ss_dssp SSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHH----------HTTSCTTSSCCCCSC
T ss_pred hhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhh----------hHHHhhhcCCCCCEE
Confidence 1100 013357788888888776 44333 45788888888875431100 000113578899999
Q ss_pred ecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccC---CCCCEEEEccCCCcccccCchhhccccccce
Q 014145 229 ELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHL---ENLATLEVSKCHGLINVLTLSTSESLVNLGR 305 (430)
Q Consensus 229 ~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l---~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~ 305 (430)
+++++ +++.+..........+++|++|+++++......|..+..+ ++|++|+++++ .++.+|.. + +++|++
T Consensus 203 ~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~--~--~~~L~~ 276 (310)
T 4glp_A 203 ALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKG--L--PAKLRV 276 (310)
T ss_dssp BCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSC--C--CSCCSC
T ss_pred ECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhh--h--cCCCCE
Confidence 99996 5654432211112567999999999975444446655555 79999999986 46676642 2 379999
Q ss_pred EeeccccccchhhcccccccCCcceeecccceEeccCCC
Q 014145 306 MKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLP 344 (430)
Q Consensus 306 L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 344 (430)
|+++++. +..+.. ...+++|++|++.+.+
T Consensus 277 L~Ls~N~-l~~~~~---------~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 277 LDLSSNR-LNRAPQ---------PDELPEVDNLTLDGNP 305 (310)
T ss_dssp EECCSCC-CCSCCC---------TTSCCCCSCEECSSTT
T ss_pred EECCCCc-CCCCch---------hhhCCCccEEECcCCC
Confidence 9999874 444321 1237999999998864
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.23 E-value=1.9e-10 Score=104.67 Aligned_cols=177 Identities=18% Similarity=0.128 Sum_probs=118.1
Q ss_pred CCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCC
Q 014145 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
.+.+.+++++. ++..++. .+ .++|++|++++|. +..+ +...+..+++|++|+++++ .+..++..
T Consensus 14 ~~~~~l~~~~~-~l~~~p~-~~---~~~l~~L~L~~n~-l~~~---------~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 77 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPS-GI---PADTEKLDLQSTG-LATL---------SDATFRGLTKLTWLNLDYN-QLQTLSAG 77 (251)
T ss_dssp GGGTEEECTTC-CCSSCCS-CC---CTTCCEEECTTSC-CCCC---------CTTTTTTCTTCCEEECTTS-CCCCCCTT
T ss_pred CCCeEEecCCC-CccccCC-CC---CCCCCEEEccCCC-cCcc---------CHhHhcCcccCCEEECCCC-cCCccCHh
Confidence 45667777765 4555433 21 3578888888874 4444 3333477888888888875 44444321
Q ss_pred ccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCcee
Q 014145 159 TENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQH 238 (430)
Q Consensus 159 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 238 (430)
.+..+++|++|++.++. ++.+++ .....+++|++|+++++ .++.
T Consensus 78 --~~~~l~~L~~L~L~~n~-l~~~~~--------------------------------~~~~~l~~L~~L~L~~N-~l~~ 121 (251)
T 3m19_A 78 --VFDDLTELGTLGLANNQ-LASLPL--------------------------------GVFDHLTQLDKLYLGGN-QLKS 121 (251)
T ss_dssp --TTTTCTTCCEEECTTSC-CCCCCT--------------------------------TTTTTCTTCCEEECCSS-CCCC
T ss_pred --HhccCCcCCEEECCCCc-ccccCh--------------------------------hHhcccCCCCEEEcCCC-cCCC
Confidence 14566777777776654 332221 12356789999999985 6777
Q ss_pred eccCCchhhhhcccccEEEeecCCCcccccC-CcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccc
Q 014145 239 LWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKM 313 (430)
Q Consensus 239 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~ 313 (430)
+....+ ..+++|+.|+++++ .+..++. .+..+++|+.|+++++ .+..++.. .+..+++|++|++++++.
T Consensus 122 ~~~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 122 LPSGVF---DRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHG-AFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSCCB
T ss_pred cChhHh---ccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCccCHH-HHhCCCCCCEEEeeCCce
Confidence 766655 77899999999986 5566655 4668899999999986 46666543 356788899999987653
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.22 E-value=5.3e-11 Score=122.01 Aligned_cols=184 Identities=17% Similarity=0.198 Sum_probs=112.1
Q ss_pred CCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccC
Q 014145 50 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 129 (430)
Q Consensus 50 l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 129 (430)
+.++..+.+.... +.++. +...+++|+.|++++|. +..++ . +..+++|+.|++++| .+..+
T Consensus 20 l~~l~~l~l~~~~-i~~~~-----~~~~L~~L~~L~l~~n~-i~~l~-~--l~~l~~L~~L~Ls~N-~l~~~-------- 80 (605)
T 1m9s_A 20 FAETIKDNLKKKS-VTDAV-----TQNELNSIDQIIANNSD-IKSVQ-G--IQYLPNVTKLFLNGN-KLTDI-------- 80 (605)
T ss_dssp HHHHHHHHTTCSC-TTSEE-----CHHHHTTCCCCBCTTCC-CCCCT-T--GGGCTTCCEEECTTS-CCCCC--------
T ss_pred HHHHHHHhccCCC-ccccc-----chhcCCCCCEEECcCCC-CCCCh-H--HccCCCCCEEEeeCC-CCCCC--------
Confidence 3345555555443 33321 22468899999999884 55543 2 678999999999998 45555
Q ss_pred CccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc----CCCceEEEecCCCCCcccCCCc
Q 014145 130 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTSEEN 205 (430)
Q Consensus 130 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~~~~ 205 (430)
+. +..+++|+.|+++++ .+..++. +..+++|++|++.+|. ++.++ +++|+.|++++|.+..+.
T Consensus 81 -~~--l~~l~~L~~L~Ls~N-~l~~l~~----l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l~---- 147 (605)
T 1m9s_A 81 -KP--LTNLKNLGWLFLDEN-KIKDLSS----LKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDIT---- 147 (605)
T ss_dssp -GG--GGGCTTCCEEECCSS-CCCCCTT----STTCTTCCEEECTTSC-CCCCGGGGGCTTCSEEECCSSCCCCCG----
T ss_pred -hh--hccCCCCCEEECcCC-CCCCChh----hccCCCCCEEEecCCC-CCCCccccCCCccCEEECCCCccCCch----
Confidence 22 478899999999986 5555542 7788899999998876 44433 345666666665544432
Q ss_pred eeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccC
Q 014145 206 FFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKC 285 (430)
Q Consensus 206 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c 285 (430)
.+..+++|+.|+++++ .+..+.+ + ..+++|+.|++++| .+..++ .+..+++|+.|++++|
T Consensus 148 ------------~l~~l~~L~~L~Ls~N-~l~~~~~--l---~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 148 ------------VLSRLTKLDTLSLEDN-QISDIVP--L---AGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp ------------GGGSCTTCSEEECCSS-CCCCCGG--G---TTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSE
T ss_pred ------------hhcccCCCCEEECcCC-cCCCchh--h---ccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCC
Confidence 2344556666666554 3433322 2 45556666666554 233332 3445555666666554
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.21 E-value=4.3e-11 Score=122.66 Aligned_cols=165 Identities=16% Similarity=0.270 Sum_probs=127.0
Q ss_pred CCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccccc
Q 014145 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 128 (430)
.+++|+.|+++++. +..+. .. ..+++|+.|++++| .+..+++ +..+++|+.|++++| .+..+
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~-~l----~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~l~~l------- 102 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQ-GI----QYLPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLFLDEN-KIKDL------- 102 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCT-TG----GGCTTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSS-CCCCC-------
T ss_pred cCCCCCEEECcCCC-CCCCh-HH----ccCCCCCEEEeeCC-CCCCChh---hccCCCCCEEECcCC-CCCCC-------
Confidence 56789999999876 66532 22 57899999999998 4666444 668999999999998 45554
Q ss_pred CCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc----CCCceEEEecCCCCCcccCCC
Q 014145 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTSEE 204 (430)
Q Consensus 129 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~~~ 204 (430)
.. +..+++|+.|+++++ .+..++. +..+++|+.|.+.+|. ++.++ +++|+.|++++|.+..+.
T Consensus 103 ---~~-l~~l~~L~~L~Ls~N-~l~~l~~----l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~~~--- 169 (605)
T 1m9s_A 103 ---SS-LKDLKKLKSLSLEHN-GISDING----LVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIV--- 169 (605)
T ss_dssp ---TT-STTCTTCCEEECTTS-CCCCCGG----GGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSCCCCCG---
T ss_pred ---hh-hccCCCCCEEEecCC-CCCCCcc----ccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCcCCCch---
Confidence 23 378899999999986 4555533 7789999999999886 55444 578999999999987755
Q ss_pred ceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCC
Q 014145 205 NFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSK 263 (430)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~ 263 (430)
....+++|+.|+++++ .+..+. .+ ..+++|+.|++++++.
T Consensus 170 -------------~l~~l~~L~~L~Ls~N-~i~~l~--~l---~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 170 -------------PLAGLTKLQNLYLSKN-HISDLR--AL---AGLKNLDVLELFSQEC 209 (605)
T ss_dssp -------------GGTTCTTCCEEECCSS-CCCBCG--GG---TTCTTCSEEECCSEEE
T ss_pred -------------hhccCCCCCEEECcCC-CCCCCh--HH---ccCCCCCEEEccCCcC
Confidence 2567899999999996 666652 23 7889999999998754
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.21 E-value=7.5e-11 Score=103.27 Aligned_cols=150 Identities=15% Similarity=0.212 Sum_probs=89.0
Q ss_pred CCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccccc
Q 014145 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 128 (430)
.+++|++|+++++. +..++ +. ..+++|++|++++| .+... + .+..+++|++|++++|. +....
T Consensus 42 ~l~~L~~L~l~~n~-i~~l~-~l----~~l~~L~~L~l~~n-~~~~~-~--~l~~l~~L~~L~l~~n~-l~~~~------ 104 (197)
T 4ezg_A 42 QMNSLTYITLANIN-VTDLT-GI----EYAHNIKDLTINNI-HATNY-N--PISGLSNLERLRIMGKD-VTSDK------ 104 (197)
T ss_dssp HHHTCCEEEEESSC-CSCCT-TG----GGCTTCSEEEEESC-CCSCC-G--GGTTCTTCCEEEEECTT-CBGGG------
T ss_pred hcCCccEEeccCCC-ccChH-HH----hcCCCCCEEEccCC-CCCcc-h--hhhcCCCCCEEEeECCc-cCccc------
Confidence 45677778777665 55433 22 46777888888777 34332 2 25567778888887774 33210
Q ss_pred CCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceee
Q 014145 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFL 208 (430)
Q Consensus 129 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 208 (430)
+.. +..+++|++|+++++......+.. +..+++|++|++.+|..++.++
T Consensus 105 --~~~-l~~l~~L~~L~Ls~n~i~~~~~~~---l~~l~~L~~L~L~~n~~i~~~~------------------------- 153 (197)
T 4ezg_A 105 --IPN-LSGLTSLTLLDISHSAHDDSILTK---INTLPKVNSIDLSYNGAITDIM------------------------- 153 (197)
T ss_dssp --SCC-CTTCTTCCEEECCSSBCBGGGHHH---HTTCSSCCEEECCSCTBCCCCG-------------------------
T ss_pred --Chh-hcCCCCCCEEEecCCccCcHhHHH---HhhCCCCCEEEccCCCCccccH-------------------------
Confidence 233 366777777777775433222222 5567777777777765344332
Q ss_pred ecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecC
Q 014145 209 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISEC 261 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c 261 (430)
....+++|+.|+++++ .++.+. .+ ..+++|+.|++++.
T Consensus 154 ---------~l~~l~~L~~L~l~~n-~i~~~~--~l---~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 154 ---------PLKTLPELKSLNIQFD-GVHDYR--GI---EDFPKLNQLYAFSQ 191 (197)
T ss_dssp ---------GGGGCSSCCEEECTTB-CCCCCT--TG---GGCSSCCEEEECBC
T ss_pred ---------hhcCCCCCCEEECCCC-CCcChH--Hh---ccCCCCCEEEeeCc
Confidence 2345667777777764 455554 22 56677777777764
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.19 E-value=4.2e-12 Score=122.34 Aligned_cols=89 Identities=11% Similarity=-0.041 Sum_probs=47.0
Q ss_pred CCCcceeecccccCCeeeccCC-CCCCCCCC-CcceEEEeCCCCCCccCchhHHHhc-----CCCCEEEEecCCCccEec
Q 014145 50 FRDIKYLQLGHFPRLQEIWHGQ-ALPVSFFN-NLRHLVVDDCTNMLSAIPANLIRCL-----NNLRWLEVRNCDSLEEVL 122 (430)
Q Consensus 50 l~~L~~L~l~~~~~l~~~~~~~-~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~~l-----~~L~~L~l~~~~~l~~~~ 122 (430)
.++|++|+++++. +....... ......++ +|++|++++| .+....+.. +..+ ++|++|++++|. +....
T Consensus 21 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~n~-l~~~~ 96 (362)
T 3goz_A 21 PHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDE-LVQILAAIPANVTSLNLSGNF-LSYKS 96 (362)
T ss_dssp CTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHH-HHHHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred CCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHH-HHHHHhccCCCccEEECcCCc-CChHH
Confidence 3448888888776 55422100 00003455 7888888877 455433332 3333 778888888774 43321
Q ss_pred ccccccCCccCc---CCcC-CccceeecCCcc
Q 014145 123 HLEELNADKEHI---GPLF-PKLFELTLMDLP 150 (430)
Q Consensus 123 ~~~~~~~~~~~l---~~~l-~~L~~L~l~~~~ 150 (430)
+..+ +..+ ++|++|+++++.
T Consensus 97 --------~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 97 --------SDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp --------HHHHHHHHHTSCTTCCEEECCSSC
T ss_pred --------HHHHHHHHHhCCCCccEEECcCCc
Confidence 0111 1223 677777777753
No 101
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.19 E-value=3.5e-12 Score=123.89 Aligned_cols=140 Identities=14% Similarity=0.088 Sum_probs=90.8
Q ss_pred CCCCEEecccCCCceeeccCC-chhhhhcccccEEEeecCCCcc-----cccCCcccCCCCCEEEEccCCCc-----ccc
Q 014145 223 PQLRYLELSRLHKVQHLWKEN-DESNKAFANLIRLKISECSKLQ-----KLVTPSWHLENLATLEVSKCHGL-----INV 291 (430)
Q Consensus 223 ~~L~~L~l~~~~~l~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~-----~l~~~l~~l~~L~~L~l~~c~~l-----~~l 291 (430)
++|++|+++++ .+....... ......+++|++|++++|..-. .++..+..+++|+.|++++|. + ..+
T Consensus 159 ~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l 236 (386)
T 2ca6_A 159 PPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSAL 236 (386)
T ss_dssp CCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHH
T ss_pred CCCcEEECCCC-CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHH
Confidence 89999999986 343211110 0112578899999999985432 233367789999999999985 4 333
Q ss_pred cCchhhccccccceEeeccccccchhhcccccccCCcc--eeecccceEeccCCCCCce-----eccCCcccCCCCccEE
Q 014145 292 LTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGC--VVFEELGYLGLDCLPSLTS-----FCLGNYALEFPSLEHV 364 (430)
Q Consensus 292 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~c~~L~~-----~~~~~~~~~~~~L~~L 364 (430)
+. .+..+++|++|++++|. +...... ..+... ..+++|++|++++| .++. ++... ...+++|++|
T Consensus 237 ~~--~l~~~~~L~~L~L~~n~-i~~~~~~---~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l-~~~l~~L~~L 308 (386)
T 2ca6_A 237 AI--ALKSWPNLRELGLNDCL-LSARGAA---AVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVI-DEKMPDLLFL 308 (386)
T ss_dssp HH--HGGGCTTCCEEECTTCC-CCHHHHH---HHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHH-HHHCTTCCEE
T ss_pred HH--HHccCCCcCEEECCCCC-CchhhHH---HHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHH-HhcCCCceEE
Confidence 32 35678999999999986 3332100 000111 12789999999997 4554 54311 1247999999
Q ss_pred eeccCCCC
Q 014145 365 VVRQCPTM 372 (430)
Q Consensus 365 ~l~~c~~l 372 (430)
++.+|+--
T Consensus 309 ~l~~N~l~ 316 (386)
T 2ca6_A 309 ELNGNRFS 316 (386)
T ss_dssp ECTTSBSC
T ss_pred EccCCcCC
Confidence 99998543
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.15 E-value=4.8e-10 Score=113.82 Aligned_cols=115 Identities=18% Similarity=0.250 Sum_probs=77.5
Q ss_pred CCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCC
Q 014145 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 130 (430)
.+|+.|+++++. +..++ ...+++|++|+++++ ++..+ | ..+++|++|++++| .+..+
T Consensus 59 ~~L~~L~Ls~n~-L~~lp------~~l~~~L~~L~Ls~N-~l~~i-p----~~l~~L~~L~Ls~N-~l~~i--------- 115 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLP------DNLPPQITVLEITQN-ALISL-P----ELPASLEYLDACDN-RLSTL--------- 115 (571)
T ss_dssp TTCSEEECCSSC-CSCCC------SCCCTTCSEEECCSS-CCSCC-C----CCCTTCCEEECCSS-CCSCC---------
T ss_pred CCccEEEeCCCC-CCccC------HhHcCCCCEEECcCC-CCccc-c----cccCCCCEEEccCC-CCCCc---------
Confidence 389999999876 66633 233588999999997 46654 3 24789999999998 45555
Q ss_pred ccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc--CCCceEEEecCCCCCcc
Q 014145 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKL 200 (430)
Q Consensus 131 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~~~~~ 200 (430)
|. + .. +|++|+++++ .+..+|. .+++|++|++.++. ++.++ +++|+.|++++|.+..+
T Consensus 116 p~-l-~~--~L~~L~Ls~N-~l~~lp~------~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~L~~l 175 (571)
T 3cvr_A 116 PE-L-PA--SLKHLDVDNN-QLTMLPE------LPALLEYINADNNQ-LTMLPELPTSLEVLSVRNNQLTFL 175 (571)
T ss_dssp CC-C-CT--TCCEEECCSS-CCSCCCC------CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCC
T ss_pred ch-h-hc--CCCEEECCCC-cCCCCCC------cCccccEEeCCCCc-cCcCCCcCCCcCEEECCCCCCCCc
Confidence 34 3 22 8999999986 4555543 46778888887765 54443 34555555555555443
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.10 E-value=1.5e-11 Score=118.47 Aligned_cols=240 Identities=11% Similarity=0.013 Sum_probs=139.6
Q ss_pred CCCcceEEEeCCCCCCccCch---hHHHhcC-CCCEEEEecCCCccEecccccccCCccCcCCc-----CCccceeecCC
Q 014145 78 FNNLRHLVVDDCTNMLSAIPA---NLIRCLN-NLRWLEVRNCDSLEEVLHLEELNADKEHIGPL-----FPKLFELTLMD 148 (430)
Q Consensus 78 l~~L~~L~l~~c~~l~~~~~~---~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~-----l~~L~~L~l~~ 148 (430)
.++|++|++++|. +....+. ..+.+++ +|++|++++| .+.... +..+ .. .++|++|++++
T Consensus 21 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~--------~~~l-~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 21 PHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKN--------SDEL-VQILAAIPANVTSLNLSG 89 (362)
T ss_dssp CTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSC--------HHHH-HHHHHTSCTTCCEEECCS
T ss_pred CCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHH--------HHHH-HHHHhccCCCccEEECcC
Confidence 4569999999884 6554432 3366777 8999999988 344331 1111 22 38899999998
Q ss_pred ccccccccCCc--cccccC-CCccEEEeccCCCccccc-----------CCCceEEEecCCCCCcccCCCceeeecCccc
Q 014145 149 LPKLKRFCNFT--ENIIEM-PELRYLAIENCPDMETFI-----------SNSVVHVTTDNKEPEKLTSEENFFLTDQIQP 214 (430)
Q Consensus 149 ~~~l~~~~~~~--~~~~~~-~~L~~L~l~~c~~l~~~~-----------~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~ 214 (430)
+. +....... ..+..+ ++|++|++.+|. ++..+ +.+|++|++++|.+..... ..
T Consensus 90 n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~----------~~ 157 (362)
T 3goz_A 90 NF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS----------DE 157 (362)
T ss_dssp SC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH----------HH
T ss_pred Cc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH----------HH
Confidence 74 33221100 002234 789999998886 55544 2589999999988664220 00
Q ss_pred ccccCCCCC-CCCEEecccCCCceeeccCCch-hhhhc-ccccEEEeecCCCccc-----ccCCccc-CCCCCEEEEccC
Q 014145 215 LFDEKVAFP-QLRYLELSRLHKVQHLWKENDE-SNKAF-ANLIRLKISECSKLQK-----LVTPSWH-LENLATLEVSKC 285 (430)
Q Consensus 215 ~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~-~~~~l-~~L~~L~l~~c~~l~~-----l~~~l~~-l~~L~~L~l~~c 285 (430)
+.......+ +|++|+++++ .++......+. ....+ ++|++|+++++. +.. ++..+.. .++|++|++++|
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred HHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 111122343 8999999986 55543332221 11334 589999999875 333 4444444 358999999986
Q ss_pred CCcccccCc---hhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCC
Q 014145 286 HGLINVLTL---STSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLP 344 (430)
Q Consensus 286 ~~l~~l~~~---~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 344 (430)
.+.+.+.. .....+++|++|++++|. +..+..............+++|+.|++++.+
T Consensus 236 -~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 236 -CLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp -CCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred -CCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 45554321 123567889999998875 1111100001111122236778888888764
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.09 E-value=5.8e-10 Score=98.37 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=15.1
Q ss_pred CCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecC
Q 014145 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 115 (430)
++|++|+++++ .+..+ +...++.+++|++|++++|
T Consensus 28 ~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n 62 (208)
T 2o6s_A 28 AQTTYLDLETN-SLKSL-PNGVFDELTSLTQLYLGGN 62 (208)
T ss_dssp TTCSEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSS
T ss_pred CCCcEEEcCCC-ccCcC-ChhhhcccccCcEEECCCC
Confidence 44555555544 23322 2222344555555555554
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.08 E-value=2.2e-10 Score=105.15 Aligned_cols=109 Identities=19% Similarity=0.285 Sum_probs=61.5
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
++.+++... .+.++..+++++.. ++++. .. ..+++|+.|++++| ++..+. + +..+++|++|++++| .+
T Consensus 8 ~i~~~~pd~-~l~~l~~l~l~~~~-i~~~~-~~----~~l~~L~~L~l~~n-~i~~l~--~-l~~l~~L~~L~L~~N-~i 75 (263)
T 1xeu_A 8 PINQVFPDP-GLANAVKQNLGKQS-VTDLV-SQ----KELSGVQNFNGDNS-NIQSLA--G-MQFFTNLKELHLSHN-QI 75 (263)
T ss_dssp EHHHHCCSH-HHHHHHHHHHTCSC-TTSEE-CH----HHHTTCSEEECTTS-CCCCCT--T-GGGCTTCCEEECCSS-CC
T ss_pred CHHHhCCCH-HHHHHHHHHhcCCC-ccccc-ch----hhcCcCcEEECcCC-Ccccch--H-HhhCCCCCEEECCCC-cc
Confidence 444444322 35566666776554 55432 11 45778888888877 455533 1 556778888888777 35
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccC
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 176 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 176 (430)
..+ +. +..+++|++|+++++ .+..++. ... ++|++|++.+|
T Consensus 76 ~~~---------~~--l~~l~~L~~L~L~~N-~l~~l~~----~~~-~~L~~L~L~~N 116 (263)
T 1xeu_A 76 SDL---------SP--LKDLTKLEELSVNRN-RLKNLNG----IPS-ACLSRLFLDNN 116 (263)
T ss_dssp CCC---------GG--GTTCSSCCEEECCSS-CCSCCTT----CCC-SSCCEEECCSS
T ss_pred CCC---------hh--hccCCCCCEEECCCC-ccCCcCc----ccc-CcccEEEccCC
Confidence 444 22 366777777777775 3443432 111 45555555544
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.08 E-value=1.3e-09 Score=97.08 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=30.7
Q ss_pred CCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCc
Q 014145 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDL 149 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~ 149 (430)
+.++.|+++++ .+..+.+...+..+++|++|++++| .+..+ +.+.+..+++|++|+++++
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i---------~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDI---------EEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEE---------CTTTTTTCTTCCEEECCSS
T ss_pred CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEE---------CHHHhCCCCCCCEEECCCC
Confidence 44556666654 3444333333455666666666665 34444 2333355555555555553
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.07 E-value=1.7e-09 Score=109.72 Aligned_cols=178 Identities=18% Similarity=0.166 Sum_probs=123.7
Q ss_pred CCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCC
Q 014145 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
.+|+.|+++++ ++..+ |..+ +++|++|++++| .+..+ | ..+++|++|+++++ .+..+|.
T Consensus 59 ~~L~~L~Ls~n-~L~~l-p~~l---~~~L~~L~Ls~N-~l~~i---------p----~~l~~L~~L~Ls~N-~l~~ip~- 117 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSSL-PDNL---PPQITVLEITQN-ALISL---------P----ELPASLEYLDACDN-RLSTLPE- 117 (571)
T ss_dssp TTCSEEECCSS-CCSCC-CSCC---CTTCSEEECCSS-CCSCC---------C----CCCTTCCEEECCSS-CCSCCCC-
T ss_pred CCccEEEeCCC-CCCcc-CHhH---cCCCCEEECcCC-CCccc---------c----cccCCCCEEEccCC-CCCCcch-
Confidence 38999999987 46664 3332 478999999998 45555 4 34689999999986 5555654
Q ss_pred ccccccCCCccEEEeccCCCccccc--CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCc
Q 014145 159 TENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKV 236 (430)
Q Consensus 159 ~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 236 (430)
+.. +|++|++.++. ++.++ +++|+.|++++|.+..+. ..+++|+.|+++++ .+
T Consensus 118 ---l~~--~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~l~~lp------------------~~l~~L~~L~Ls~N-~L 172 (571)
T 3cvr_A 118 ---LPA--SLKHLDVDNNQ-LTMLPELPALLEYINADNNQLTMLP------------------ELPTSLEVLSVRNN-QL 172 (571)
T ss_dssp ---CCT--TCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCC------------------CCCTTCCEEECCSS-CC
T ss_pred ---hhc--CCCEEECCCCc-CCCCCCcCccccEEeCCCCccCcCC------------------CcCCCcCEEECCCC-CC
Confidence 122 89999998875 55555 567888888888877655 15678888888885 56
Q ss_pred eeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCC-------CEEEEccCCCcccccCchhhccccccceEeec
Q 014145 237 QHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENL-------ATLEVSKCHGLINVLTLSTSESLVNLGRMKIA 309 (430)
Q Consensus 237 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L-------~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~ 309 (430)
+.++. + . ++|+.|+++++ .++.+|. +.. +| +.|++++| .++.+|. .+..+++|+.|+++
T Consensus 173 ~~lp~--l---~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~--~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 173 TFLPE--L---P--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPE--NILSLDPTCTIILE 238 (571)
T ss_dssp SCCCC--C---C--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSS-CCCCCCG--GGGGSCTTEEEECC
T ss_pred CCcch--h---h--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCC-cceecCH--HHhcCCCCCEEEee
Confidence 66543 3 3 78888888886 5667765 333 66 88888885 5666665 24558888888888
Q ss_pred cccccch
Q 014145 310 DCKMIEQ 316 (430)
Q Consensus 310 ~c~~l~~ 316 (430)
+++....
T Consensus 239 ~N~l~~~ 245 (571)
T 3cvr_A 239 DNPLSSR 245 (571)
T ss_dssp SSSCCHH
T ss_pred CCcCCCc
Confidence 8764333
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.05 E-value=1.7e-09 Score=95.32 Aligned_cols=149 Identities=16% Similarity=0.117 Sum_probs=95.5
Q ss_pred cCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc
Q 014145 104 LNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI 183 (430)
Q Consensus 104 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 183 (430)
.++|++|++++| .+..+ +...+..+++|++|+++++ .+..++.. .+..+++|++|++.++. ++.++
T Consensus 27 ~~~l~~L~l~~n-~l~~~---------~~~~~~~l~~L~~L~l~~n-~l~~~~~~--~~~~l~~L~~L~Ls~n~-l~~~~ 92 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSL---------PNGVFDELTSLTQLYLGGN-KLQSLPNG--VFNKLTSLTYLNLSTNQ-LQSLP 92 (208)
T ss_dssp CTTCSEEECCSS-CCCCC---------CTTTTTTCTTCSEEECCSS-CCCCCCTT--TTTTCTTCCEEECCSSC-CCCCC
T ss_pred CCCCcEEEcCCC-ccCcC---------ChhhhcccccCcEEECCCC-ccCccChh--hcCCCCCcCEEECCCCc-CCccC
Confidence 467999999988 45555 4454577889999999885 45555332 13567777777777664 33322
Q ss_pred CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCC
Q 014145 184 SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSK 263 (430)
Q Consensus 184 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~ 263 (430)
+ .....+++|++|+++++ .++.+....+ ..+++|+.|+++++ .
T Consensus 93 ~--------------------------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~l~~N-~ 135 (208)
T 2o6s_A 93 N--------------------------------GVFDKLTQLKELALNTN-QLQSLPDGVF---DKLTQLKDLRLYQN-Q 135 (208)
T ss_dssp T--------------------------------TTTTTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-C
T ss_pred H--------------------------------hHhcCccCCCEEEcCCC-cCcccCHhHh---ccCCcCCEEECCCC-c
Confidence 1 11356778888888774 5666555444 66778888888875 3
Q ss_pred cccccCC-cccCCCCCEEEEccCCCcccccCchhhccccccceEeecccc
Q 014145 264 LQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 264 l~~l~~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 312 (430)
+..++.. +..+++|+.|++++++ +.+.++.|++|+++.+.
T Consensus 136 l~~~~~~~~~~l~~L~~L~l~~N~---------~~~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 136 LKSVPDGVFDRLTSLQYIWLHDNP---------WDCTCPGIRYLSEWINK 176 (208)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSCC---------BCCCTTTTHHHHHHHHH
T ss_pred cceeCHHHhccCCCccEEEecCCC---------eecCCCCHHHHHHHHHh
Confidence 4455443 5567788888887763 23445667777666543
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.03 E-value=8.6e-10 Score=101.15 Aligned_cols=107 Identities=22% Similarity=0.342 Sum_probs=80.3
Q ss_pred ccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccc
Q 014145 47 MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEE 126 (430)
Q Consensus 47 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 126 (430)
...+++|++|+++++. +..+. +. ..+++|+.|+++++ .+..+++ +..+++|++|++++| .+..+
T Consensus 37 ~~~l~~L~~L~l~~n~-i~~l~-~l----~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N-~l~~l----- 100 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSN-IQSLA-GM----QFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRN-RLKNL----- 100 (263)
T ss_dssp HHHHTTCSEEECTTSC-CCCCT-TG----GGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSS-CCSCC-----
T ss_pred hhhcCcCcEEECcCCC-cccch-HH----hhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCC-ccCCc-----
Confidence 4467899999999886 77643 22 57899999999998 4666544 678999999999998 46555
Q ss_pred ccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccc
Q 014145 127 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETF 182 (430)
Q Consensus 127 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 182 (430)
|. + .. ++|++|+++++ .+..++. +..+++|++|++.++. ++.+
T Consensus 101 ----~~-~-~~-~~L~~L~L~~N-~l~~~~~----l~~l~~L~~L~Ls~N~-i~~~ 143 (263)
T 1xeu_A 101 ----NG-I-PS-ACLSRLFLDNN-ELRDTDS----LIHLKNLEILSIRNNK-LKSI 143 (263)
T ss_dssp ----TT-C-CC-SSCCEEECCSS-CCSBSGG----GTTCTTCCEEECTTSC-CCBC
T ss_pred ----Cc-c-cc-CcccEEEccCC-ccCCChh----hcCcccccEEECCCCc-CCCC
Confidence 22 2 23 89999999996 5555542 6788899999988875 5443
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.99 E-value=4.9e-09 Score=93.34 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=5.1
Q ss_pred cCCCCCEEEEcc
Q 014145 273 HLENLATLEVSK 284 (430)
Q Consensus 273 ~l~~L~~L~l~~ 284 (430)
.+++|+.|++++
T Consensus 150 ~l~~L~~L~L~~ 161 (220)
T 2v9t_B 150 PLRAIQTMHLAQ 161 (220)
T ss_dssp TCTTCCEEECCS
T ss_pred CCCCCCEEEeCC
Confidence 334444444443
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.99 E-value=2.7e-09 Score=95.63 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=62.9
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
+..+|.++. ++|++|+++++. +..+.... ...+++|+.|+++++. +..+ +...+..+++|++|++++| .+.
T Consensus 31 l~~ip~~~~--~~L~~L~Ls~n~-i~~~~~~~---~~~l~~L~~L~L~~N~-l~~i-~~~~~~~l~~L~~L~Ls~N-~l~ 101 (229)
T 3e6j_A 31 HASVPAGIP--TNAQILYLHDNQ-ITKLEPGV---FDSLINLKELYLGSNQ-LGAL-PVGVFDSLTQLTVLDLGTN-QLT 101 (229)
T ss_dssp CSSCCSCCC--TTCSEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSS-CCC
T ss_pred cCccCCCCC--CCCCEEEcCCCc-cCccCHHH---hhCccCCcEEECCCCC-CCCc-ChhhcccCCCcCEEECCCC-cCC
Confidence 444444332 567777776655 44432111 1356667777777653 4443 3233556677777777766 344
Q ss_pred EecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccC
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 176 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 176 (430)
.+ +...+..+++|++|+++++ .+..+|.. +..+++|++|++.++
T Consensus 102 ~l---------~~~~~~~l~~L~~L~Ls~N-~l~~lp~~---~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 102 VL---------PSAVFDRLVHLKELFMCCN-KLTELPRG---IERLTHLTHLALDQN 145 (229)
T ss_dssp CC---------CTTTTTTCTTCCEEECCSS-CCCSCCTT---GGGCTTCSEEECCSS
T ss_pred cc---------ChhHhCcchhhCeEeccCC-cccccCcc---cccCCCCCEEECCCC
Confidence 44 3444456667777777664 44455433 455666666666654
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.95 E-value=3.2e-09 Score=102.05 Aligned_cols=118 Identities=17% Similarity=0.184 Sum_probs=67.7
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
+..+|..+ .+.++.|+++++. ++.+.... +. ..+++|+.|+++++ .+..+.+. .+.++++|++|++++| .+.
T Consensus 30 l~~iP~~~--~~~l~~L~Ls~N~-l~~l~~~~-~~-~~l~~L~~L~L~~N-~i~~i~~~-~~~~l~~L~~L~Ls~N-~l~ 101 (361)
T 2xot_A 30 LPNVPQSL--PSYTALLDLSHNN-LSRLRAEW-TP-TRLTNLHSLLLSHN-HLNFISSE-AFVPVPNLRYLDLSSN-HLH 101 (361)
T ss_dssp CSSCCSSC--CTTCSEEECCSSC-CCEECTTS-SS-SCCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCC
T ss_pred cCccCccC--CCCCCEEECCCCC-CCccChhh-hh-hcccccCEEECCCC-cCCccChh-hccCCCCCCEEECCCC-cCC
Confidence 44555543 2357777777665 66544332 10 15677777777776 35544333 2566777777777776 355
Q ss_pred EecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
.+ +...+..+++|+.|+++++ .+..++.. .+..+++|++|++.++.
T Consensus 102 ~~---------~~~~~~~l~~L~~L~L~~N-~i~~~~~~--~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 102 TL---------DEFLFSDLQALEVLLLYNN-HIVVVDRN--AFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp EE---------CTTTTTTCTTCCEEECCSS-CCCEECTT--TTTTCTTCCEEECCSSC
T ss_pred cC---------CHHHhCCCcCCCEEECCCC-cccEECHH--HhCCcccCCEEECCCCc
Confidence 55 4444566777777777765 33333211 14556666666666553
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.95 E-value=6.3e-09 Score=93.22 Aligned_cols=60 Identities=20% Similarity=0.147 Sum_probs=32.2
Q ss_pred CCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCc
Q 014145 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDL 149 (430)
Q Consensus 78 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~ 149 (430)
.++|++|+++++ .+..+.+. .+..+++|++|++++|. +..+ +...+..+++|++|+++++
T Consensus 39 ~~~L~~L~Ls~n-~i~~~~~~-~~~~l~~L~~L~L~~N~-l~~i---------~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 39 PTNAQILYLHDN-QITKLEPG-VFDSLINLKELYLGSNQ-LGAL---------PVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp CTTCSEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CCCC---------CTTTTTTCTTCCEEECCSS
T ss_pred CCCCCEEEcCCC-ccCccCHH-HhhCccCCcEEECCCCC-CCCc---------ChhhcccCCCcCEEECCCC
Confidence 456666666665 34443332 24556666666666663 4443 3333455566666666554
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.95 E-value=8.7e-09 Score=98.95 Aligned_cols=85 Identities=15% Similarity=0.138 Sum_probs=42.9
Q ss_pred CCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCc----ccCCCCCEEEEccCCCcccccCch
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS----WHLENLATLEVSKCHGLINVLTLS 295 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l----~~l~~L~~L~l~~c~~l~~l~~~~ 295 (430)
..+++|+.|+++++ .+..+.+..+ ..+++|+.|+++++ .+..+|... ..+++|+.|+++++ .+..++..
T Consensus 109 ~~l~~L~~L~L~~N-~i~~~~~~~~---~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~- 181 (361)
T 2xot_A 109 SDLQALEVLLLYNN-HIVVVDRNAF---EDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLT- 181 (361)
T ss_dssp TTCTTCCEEECCSS-CCCEECTTTT---TTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHH-
T ss_pred CCCcCCCEEECCCC-cccEECHHHh---CCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHH-
Confidence 34455566666553 4444444444 55566666666654 344444332 34666777777664 35554432
Q ss_pred hhccccc--cceEeeccc
Q 014145 296 TSESLVN--LGRMKIADC 311 (430)
Q Consensus 296 ~~~~l~~--L~~L~l~~c 311 (430)
.+..++. |+.|++.++
T Consensus 182 ~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 182 DLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp HHHHSCHHHHTTEECCSS
T ss_pred HhhhccHhhcceEEecCC
Confidence 2334444 356666653
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.94 E-value=1.5e-08 Score=90.13 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=17.1
Q ss_pred CCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecC
Q 014145 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISEC 261 (430)
Q Consensus 221 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c 261 (430)
.+++|+.|+++++ .++.+....+ ..+++|+.|+++++
T Consensus 126 ~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 126 DLHNLNLLSLYDN-KLQTIAKGTF---SPLRAIQTMHLAQN 162 (220)
T ss_dssp TCTTCCEEECCSS-CCSCCCTTTT---TTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC-cCCEECHHHH---hCCCCCCEEEeCCC
Confidence 3445555555542 3444433333 44455555555443
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.89 E-value=2.1e-08 Score=89.19 Aligned_cols=149 Identities=11% Similarity=0.095 Sum_probs=76.6
Q ss_pred ceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCCccc
Q 014145 82 RHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTEN 161 (430)
Q Consensus 82 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~ 161 (430)
+.+++++. .+..+ |..+ ...+++|++++| .+..+. +.+.+..+++|++|+++++ .+..++.. .
T Consensus 14 ~~l~~s~n-~l~~i-P~~~---~~~~~~L~L~~N-~l~~~~--------~~~~~~~l~~L~~L~L~~N-~i~~i~~~--~ 76 (220)
T 2v70_A 14 TTVDCSNQ-KLNKI-PEHI---PQYTAELRLNNN-EFTVLE--------ATGIFKKLPQLRKINFSNN-KITDIEEG--A 76 (220)
T ss_dssp TEEECCSS-CCSSC-CSCC---CTTCSEEECCSS-CCCEEC--------CCCCGGGCTTCCEEECCSS-CCCEECTT--T
T ss_pred CEeEeCCC-CcccC-ccCC---CCCCCEEEcCCC-cCCccC--------chhhhccCCCCCEEECCCC-cCCEECHH--H
Confidence 46666664 34443 3221 345677887777 354441 2233466777777777764 34444321 1
Q ss_pred cccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeecc
Q 014145 162 IIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWK 241 (430)
Q Consensus 162 ~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 241 (430)
+..+++|++|++.++. ++.+++ ..+..+++|++|+++++ .++.+.+
T Consensus 77 ~~~l~~L~~L~Ls~N~-l~~~~~--------------------------------~~~~~l~~L~~L~Ls~N-~l~~~~~ 122 (220)
T 2v70_A 77 FEGASGVNEILLTSNR-LENVQH--------------------------------KMFKGLESLKTLMLRSN-RITCVGN 122 (220)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCG--------------------------------GGGTTCSSCCEEECTTS-CCCCBCT
T ss_pred hCCCCCCCEEECCCCc-cCccCH--------------------------------hHhcCCcCCCEEECCCC-cCCeECH
Confidence 4455556666555543 222111 11244566666666663 4555444
Q ss_pred CCchhhhhcccccEEEeecCCCcccc-cCCcccCCCCCEEEEccC
Q 014145 242 ENDESNKAFANLIRLKISECSKLQKL-VTPSWHLENLATLEVSKC 285 (430)
Q Consensus 242 ~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~l~~l~~L~~L~l~~c 285 (430)
..+ ..+++|+.|+++++. +..+ |..+..+++|+.|+++++
T Consensus 123 ~~~---~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 123 DSF---IGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp TSS---TTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSC
T ss_pred hHc---CCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCc
Confidence 444 555666666666643 3333 444455556666666554
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.88 E-value=5.6e-11 Score=121.02 Aligned_cols=106 Identities=17% Similarity=0.081 Sum_probs=59.5
Q ss_pred cCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCC
Q 014145 183 ISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECS 262 (430)
Q Consensus 183 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~ 262 (430)
++..|+.|++++|.+.++. .++.+++|+.|+++++ .++.++ ..+ ..+++|+.|+++++
T Consensus 439 ~~~~L~~L~Ls~n~l~~lp----------------~~~~l~~L~~L~Ls~N-~l~~lp-~~~---~~l~~L~~L~Ls~N- 496 (567)
T 1dce_A 439 EYADVRVLHLAHKDLTVLC----------------HLEQLLLVTHLDLSHN-RLRALP-PAL---AALRCLEVLQASDN- 496 (567)
T ss_dssp HHTTCSEEECTTSCCSSCC----------------CGGGGTTCCEEECCSS-CCCCCC-GGG---GGCTTCCEEECCSS-
T ss_pred CccCceEEEecCCCCCCCc----------------CccccccCcEeecCcc-cccccc-hhh---hcCCCCCEEECCCC-
Confidence 3445666666666655543 2345666777777664 455443 233 56666777777664
Q ss_pred CcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeecccc
Q 014145 263 KLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 263 ~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 312 (430)
.++.+| .+..+++|+.|+++++ .+..+.....++.+++|+.|++++++
T Consensus 497 ~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 497 ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 344455 5556666666666664 34444201124556666666666543
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=2.6e-08 Score=94.28 Aligned_cols=86 Identities=17% Similarity=0.138 Sum_probs=63.0
Q ss_pred CCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCC-cccCCCCC-EEEEccCCCcccccCchhhcc
Q 014145 222 FPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLA-TLEVSKCHGLINVLTLSTSES 299 (430)
Q Consensus 222 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~-~L~l~~c~~l~~l~~~~~~~~ 299 (430)
+++|+++++.++ +++.+....| ..+++|+++.+.+. +..++.. +..+++|+ .+++.+ .++.+...+ +..
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF---~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~a-F~~ 295 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTF---AQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGA-FMG 295 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTT---TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTT-TTT
T ss_pred cCCCeEEECCCC-CcceecHhhh---hCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhh-hhC
Confidence 678999999874 5888877777 88889999988873 6666543 55788888 888876 577666543 567
Q ss_pred ccccceEeeccccccchh
Q 014145 300 LVNLGRMKIADCKMIEQI 317 (430)
Q Consensus 300 l~~L~~L~l~~c~~l~~~ 317 (430)
|++|+.|++... .+..+
T Consensus 296 c~~L~~l~l~~n-~i~~I 312 (329)
T 3sb4_A 296 CDNLRYVLATGD-KITTL 312 (329)
T ss_dssp CTTEEEEEECSS-CCCEE
T ss_pred CccCCEEEeCCC-ccCcc
Confidence 888999988542 34444
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.82 E-value=2.5e-08 Score=94.38 Aligned_cols=102 Identities=17% Similarity=0.156 Sum_probs=65.9
Q ss_pred cCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccc-eEeccCCCCCceecc
Q 014145 273 HLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELG-YLGLDCLPSLTSFCL 351 (430)
Q Consensus 273 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~c~~L~~~~~ 351 (430)
.+++|+.+++.++ .++.++..+ +..+++|++|++.+. ++.+... ....+++|+ .+.+.+ +++.++.
T Consensus 224 ~~~~L~~l~L~~n-~i~~I~~~a-F~~~~~L~~l~l~~n--i~~I~~~-------aF~~~~~L~~~l~l~~--~l~~I~~ 290 (329)
T 3sb4_A 224 YMPNLVSLDISKT-NATTIPDFT-FAQKKYLLKIKLPHN--LKTIGQR-------VFSNCGRLAGTLELPA--SVTAIEF 290 (329)
T ss_dssp HCTTCCEEECTTB-CCCEECTTT-TTTCTTCCEEECCTT--CCEECTT-------TTTTCTTCCEEEEECT--TCCEECT
T ss_pred hcCCCeEEECCCC-CcceecHhh-hhCCCCCCEEECCcc--cceehHH-------HhhCChhccEEEEEcc--cceEEch
Confidence 3678888888764 366666543 566778888888653 4444211 112266777 788876 7777765
Q ss_pred CCcccCCCCccEEeeccCCCCcccCC-CCcCCCCceeee
Q 014145 352 GNYALEFPSLEHVVVRQCPTMKIFSQ-GVVDAPKLNKVK 389 (430)
Q Consensus 352 ~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~l~ 389 (430)
+ .+..|++|+++.+.+ ..++.++. .+..+++|+.|.
T Consensus 291 ~-aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 291 G-AFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp T-TTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred h-hhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 3 344678888888855 35666654 456777888765
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.76 E-value=1.2e-08 Score=86.64 Aligned_cols=131 Identities=21% Similarity=0.171 Sum_probs=65.6
Q ss_pred CCCCCEEecccCCCce--eeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCccc-ccCchhhc
Q 014145 222 FPQLRYLELSRLHKVQ--HLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLIN-VLTLSTSE 298 (430)
Q Consensus 222 ~~~L~~L~l~~~~~l~--~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~-l~~~~~~~ 298 (430)
.++|+.|+++++ .++ .++ ..+ ..+++|+.|+++++. +..+ ..+..+++|+.|++++|. +.. ++. ...
T Consensus 23 ~~~L~~L~l~~n-~l~~~~i~-~~~---~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~--~~~ 92 (168)
T 2ell_A 23 PAAVRELVLDNC-KSNDGKIE-GLT---AEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENR-IFGGLDM--LAE 92 (168)
T ss_dssp TTSCSEEECCSC-BCBTTBCS-SCC---GGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCC-CCSCCCH--HHH
T ss_pred cccCCEEECCCC-CCChhhHH-HHH---HhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCc-CchHHHH--HHh
Confidence 345666666654 233 332 222 455666666666653 3433 445556666666666653 333 221 234
Q ss_pred cccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceecc--CCcccCCCCccEEeeccCC
Q 014145 299 SLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCL--GNYALEFPSLEHVVVRQCP 370 (430)
Q Consensus 299 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~--~~~~~~~~~L~~L~l~~c~ 370 (430)
.+++|++|++++|. +..+... .....+++|++|++.++ .++.++. ......+++|++|++.+|.
T Consensus 93 ~l~~L~~L~Ls~N~-l~~~~~~------~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 93 KLPNLTHLNLSGNK-LKDISTL------EPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HCTTCCEEECBSSS-CCSSGGG------GGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred hCCCCCEEeccCCc-cCcchhH------HHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 46666666666653 3332100 01122566666666665 3443332 0012346777777777764
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.71 E-value=2.4e-08 Score=84.63 Aligned_cols=133 Identities=16% Similarity=0.184 Sum_probs=99.2
Q ss_pred hhcccccEEEeecCCCc-ccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccC
Q 014145 248 KAFANLIRLKISECSKL-QKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEA 326 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l-~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 326 (430)
..+++|+.|++++|... ..+|..+..+++|+.|++++|. +..+. .+..+++|++|++++|..-..+.
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~---~~~~l~~L~~L~Ls~N~l~~~~~-------- 88 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVS---NLPKLPKLKKLELSENRIFGGLD-------- 88 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCS---SCCCCSSCCEEEEESCCCCSCCC--------
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChh---hhccCCCCCEEECcCCcCchHHH--------
Confidence 44588999999998643 3788777889999999999985 66662 46789999999999875322121
Q ss_pred CcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCC----CCcCCCCceeeeccccC
Q 014145 327 KGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ----GVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 327 ~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~----~~~~~~~L~~l~l~~~~ 394 (430)
.....+++|++|+++++ .++.++.......+++|++|++++| .++.++. .+..+++|+++++.++.
T Consensus 89 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred HHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 11123889999999997 6777653223456899999999997 4556655 46678999999997653
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.70 E-value=4.9e-08 Score=83.46 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=58.2
Q ss_pred CCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccC--CcccCCCCCEEEEccCCCcccccCc--
Q 014145 219 KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT--PSWHLENLATLEVSKCHGLINVLTL-- 294 (430)
Q Consensus 219 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~l~~l~~L~~L~l~~c~~l~~l~~~-- 294 (430)
.+.+++|++|+++++ .++.++...+ ..+++|+.|+++++ .+..+|. .+..+++|+.|++++++ +..++..
T Consensus 60 l~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~ 133 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNN-RICRIGEGLD---QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRL 133 (176)
T ss_dssp CCCCSSCCEEECCSS-CCCEECSCHH---HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHH
T ss_pred cccCCCCCEEECCCC-cccccCcchh---hcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHH
Confidence 456778888888875 5666654433 66788888888876 3455654 56677888888888764 4444431
Q ss_pred hhhccccccceEeecccc
Q 014145 295 STSESLVNLGRMKIADCK 312 (430)
Q Consensus 295 ~~~~~l~~L~~L~l~~c~ 312 (430)
..+..+++|+.|+++++.
T Consensus 134 ~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 134 YVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHHHHCTTCSEETTEECC
T ss_pred HHHHHCCccceeCCCcCC
Confidence 125667778888777664
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.70 E-value=3.6e-08 Score=81.72 Aligned_cols=84 Identities=25% Similarity=0.288 Sum_probs=44.3
Q ss_pred CCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCccccc--CCcccCCCCCEEEEccCCCcccccCc--h
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV--TPSWHLENLATLEVSKCHGLINVLTL--S 295 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~l~~l~~L~~L~l~~c~~l~~l~~~--~ 295 (430)
+.+++|++|+++++ .++...+..+ ..+++|+.|+++++. +..++ ..+..+++|++|++++| .+..++.. .
T Consensus 61 ~~l~~L~~L~Ls~n-~i~~~~~~~~---~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~ 134 (149)
T 2je0_A 61 PKLNKLKKLELSDN-RVSGGLEVLA---EKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYREN 134 (149)
T ss_dssp CCCTTCCEEECCSS-CCCSCTHHHH---HHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHH
T ss_pred hcCCCCCEEECCCC-cccchHHHHh---hhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHH
Confidence 44566666666664 3333111111 446667777776653 33332 44556667777777665 34444431 2
Q ss_pred hhccccccceEeec
Q 014145 296 TSESLVNLGRMKIA 309 (430)
Q Consensus 296 ~~~~l~~L~~L~l~ 309 (430)
.+..+++|++|+++
T Consensus 135 ~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 135 VFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHCTTCCEETTB
T ss_pred HHHHCCCcccccCC
Confidence 34556666666654
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.70 E-value=1.9e-08 Score=83.50 Aligned_cols=85 Identities=20% Similarity=0.298 Sum_probs=47.1
Q ss_pred CCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhcc
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSES 299 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 299 (430)
..+++|+.|+++++ .++.+ ..+ ..+++|+.|+++++.....+|.....+++|++|++++|. ++.++....++.
T Consensus 39 ~~l~~L~~L~l~~n-~l~~~--~~~---~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~ 111 (149)
T 2je0_A 39 DEFEELEFLSTINV-GLTSI--ANL---PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKK 111 (149)
T ss_dssp TTCTTCCEEECTTS-CCCCC--TTC---CCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGG
T ss_pred hhcCCCcEEECcCC-CCCCc--hhh---hcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhh
Confidence 45667777777664 44444 222 556667777776654333344444456666666666653 444322123455
Q ss_pred ccccceEeeccc
Q 014145 300 LVNLGRMKIADC 311 (430)
Q Consensus 300 l~~L~~L~l~~c 311 (430)
+++|++|++++|
T Consensus 112 l~~L~~L~l~~N 123 (149)
T 2je0_A 112 LENLKSLDLFNC 123 (149)
T ss_dssp CTTCCEEECTTC
T ss_pred CCCCCEEeCcCC
Confidence 666666666665
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.67 E-value=6.6e-08 Score=83.99 Aligned_cols=117 Identities=14% Similarity=0.141 Sum_probs=68.5
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
++++|..+. ++|++|+++++. +..+.... ....+++|++|+++++ .+..+.|.. +.++++|++|++++| .+.
T Consensus 20 l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~ 91 (192)
T 1w8a_A 20 LKEIPRDIP--LHTTELLLNDNE-LGRISSDG--LFGRLPHLVKLELKRN-QLTGIEPNA-FEGASHIQELQLGEN-KIK 91 (192)
T ss_dssp CSSCCSCCC--TTCSEEECCSCC-CCSBCCSC--SGGGCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSC-CCC
T ss_pred cCcCccCCC--CCCCEEECCCCc-CCccCCcc--ccccCCCCCEEECCCC-CCCCcCHhH-cCCcccCCEEECCCC-cCC
Confidence 445554432 377777777665 55433211 0145777777777776 355543433 566777777777777 455
Q ss_pred EecccccccCCccCcCCcCCccceeecCCccccccc-cCCccccccCCCccEEEeccCC
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF-CNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
.+ +...+..+++|++|+++++ .+..+ +.. +..+++|++|++.+++
T Consensus 92 ~~---------~~~~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 92 EI---------SNKMFLGLHQLKTLNLYDN-QISCVMPGS---FEHLNSLTSLNLASNP 137 (192)
T ss_dssp EE---------CSSSSTTCTTCCEEECCSS-CCCEECTTS---STTCTTCCEEECTTCC
T ss_pred cc---------CHHHhcCCCCCCEEECCCC-cCCeeCHHH---hhcCCCCCEEEeCCCC
Confidence 55 3343466777777777775 33333 222 4566677777766654
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.65 E-value=1.8e-07 Score=81.13 Aligned_cols=103 Identities=18% Similarity=0.152 Sum_probs=70.3
Q ss_pred ceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccC
Q 014145 54 KYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEH 133 (430)
Q Consensus 54 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 133 (430)
+++++++.. ++.++ ....++|+.|+++++ .+..+++.+.+..+++|++|++++| .+..+ +..
T Consensus 11 ~~l~~s~~~-l~~ip------~~~~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~---------~~~ 72 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIP------RDIPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGI---------EPN 72 (192)
T ss_dssp TEEECTTSC-CSSCC------SCCCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCB---------CTT
T ss_pred CEEEcCCCC-cCcCc------cCCCCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCc---------CHh
Confidence 567777665 55533 233458999999987 4666555445678999999999998 45554 233
Q ss_pred cCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 134 IGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 134 l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
.+..+++|++|+++++ .+..++.. .+..+++|++|++.++.
T Consensus 73 ~~~~l~~L~~L~Ls~N-~l~~~~~~--~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 73 AFEGASHIQELQLGEN-KIKEISNK--MFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp TTTTCTTCCEEECCSC-CCCEECSS--SSTTCTTCCEEECCSSC
T ss_pred HcCCcccCCEEECCCC-cCCccCHH--HhcCCCCCCEEECCCCc
Confidence 3578899999999985 45555332 14567777777777764
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.63 E-value=8.2e-08 Score=83.49 Aligned_cols=116 Identities=15% Similarity=0.074 Sum_probs=66.3
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
++++|.++ +++|++|+++++. ++.++... ..+++|+.|+++++ .+..+.+ ..+.++++|++|++++| .+.
T Consensus 22 l~~ip~~~--~~~l~~L~L~~n~-i~~ip~~~----~~l~~L~~L~Ls~N-~i~~i~~-~~f~~l~~L~~L~Ls~N-~l~ 91 (193)
T 2wfh_A 22 LKVLPKGI--PRDVTELYLDGNQ-FTLVPKEL----SNYKHLTLIDLSNN-RISTLSN-QSFSNMTQLLTLILSYN-RLR 91 (193)
T ss_dssp CSSCCSCC--CTTCCEEECCSSC-CCSCCGGG----GGCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCC
T ss_pred CCcCCCCC--CCCCCEEECCCCc-CchhHHHh----hcccCCCEEECCCC-cCCEeCH-hHccCCCCCCEEECCCC-ccC
Confidence 44455443 3577777777665 55433222 45677777777775 3444333 23566777777777776 355
Q ss_pred EecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
.+ +...+..+++|++|+++++ .+..++.. .+..+++|+.|.+.+++
T Consensus 92 ~i---------~~~~f~~l~~L~~L~L~~N-~l~~~~~~--~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 92 CI---------PPRTFDGLKSLRLLSLHGN-DISVVPEG--AFNDLSALSHLAIGANP 137 (193)
T ss_dssp BC---------CTTTTTTCTTCCEEECCSS-CCCBCCTT--TTTTCTTCCEEECCSSC
T ss_pred Ee---------CHHHhCCCCCCCEEECCCC-CCCeeChh--hhhcCccccEEEeCCCC
Confidence 54 3333466677777777764 44444332 13456666666666554
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.56 E-value=2e-07 Score=79.56 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=45.8
Q ss_pred CCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCc-ccCCCCCEEEEccCCCcccccCchhhcccc
Q 014145 223 PQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS-WHLENLATLEVSKCHGLINVLTLSTSESLV 301 (430)
Q Consensus 223 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l-~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 301 (430)
++|+.|+++++ .++.+ ..+ ..+++|+.|+++++ .+..+|... ..+++|+.|+++++ .+..++....+..++
T Consensus 42 ~~L~~L~Ls~N-~l~~~--~~l---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~ 113 (176)
T 1a9n_A 42 DQFDAIDFSDN-EIRKL--DGF---PLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLK 113 (176)
T ss_dssp TCCSEEECCSS-CCCEE--CCC---CCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCT
T ss_pred CCCCEEECCCC-CCCcc--ccc---ccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCC
Confidence 36777777764 45554 233 55666777777665 344555443 46666666666665 344444322344556
Q ss_pred ccceEeecccc
Q 014145 302 NLGRMKIADCK 312 (430)
Q Consensus 302 ~L~~L~l~~c~ 312 (430)
+|+.|++++++
T Consensus 114 ~L~~L~l~~N~ 124 (176)
T 1a9n_A 114 SLTYLCILRNP 124 (176)
T ss_dssp TCCEEECCSSG
T ss_pred CCCEEEecCCC
Confidence 66666666553
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.56 E-value=9.2e-06 Score=78.83 Aligned_cols=253 Identities=11% Similarity=0.088 Sum_probs=137.5
Q ss_pred CCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCC
Q 014145 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
..++.+.+.. ++..+.... +.++ +|+.+.+..+ +..+ +...+.+ .+|+.+.+.+ .+..+..
T Consensus 113 ~~l~~i~ip~--~i~~I~~~a-F~~~-~L~~i~l~~~--i~~I---------~~~aF~~-~~L~~i~lp~--~l~~I~~- 173 (401)
T 4fdw_A 113 KGYNEIILPN--SVKSIPKDA-FRNS-QIAKVVLNEG--LKSI---------GDMAFFN-STVQEIVFPS--TLEQLKE- 173 (401)
T ss_dssp SSCSEEECCT--TCCEECTTT-TTTC-CCSEEECCTT--CCEE---------CTTTTTT-CCCCEEECCT--TCCEECS-
T ss_pred CCccEEEECC--ccCEehHhh-cccC-CccEEEeCCC--ccEE---------CHHhcCC-CCceEEEeCC--CccEehH-
Confidence 4555555554 444433322 4444 5777776543 5555 3333344 3566666664 4444422
Q ss_pred ccccccCCCccEEEeccCCCccccc-----CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccC
Q 014145 159 TENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRL 233 (430)
Q Consensus 159 ~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 233 (430)
.....|++|+.+.+.++. ++.++ ..+|+.+.+..+ +..+.. .....+++|+.+++..
T Consensus 174 -~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~-l~~I~~--------------~aF~~~~~L~~l~l~~- 235 (401)
T 4fdw_A 174 -DIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT-LKEIGS--------------QAFLKTSQLKTIEIPE- 235 (401)
T ss_dssp -STTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT-CCEECT--------------TTTTTCTTCCCEECCT-
T ss_pred -HHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc-hheehh--------------hHhhCCCCCCEEecCC-
Confidence 224566667777665432 43333 335555555432 322220 1235677888888875
Q ss_pred CCceeeccCCchhhhhcccccEEEeecCCCcccccC-CcccCCCCCEEEEccCCC----cccccCchhhccccccceEee
Q 014145 234 HKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHG----LINVLTLSTSESLVNLGRMKI 308 (430)
Q Consensus 234 ~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c~~----l~~l~~~~~~~~l~~L~~L~l 308 (430)
+++.+....| .. .+|+.+.+.+ .+..++. .+..+++|+.+.+.+... ...++.. .+..|++|+.+.+
T Consensus 236 -~l~~I~~~aF---~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~-aF~~c~~L~~l~l 307 (401)
T 4fdw_A 236 -NVSTIGQEAF---RE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY-CLEGCPKLARFEI 307 (401)
T ss_dssp -TCCEECTTTT---TT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT-TTTTCTTCCEECC
T ss_pred -CccCcccccc---cc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHH-HhhCCccCCeEEe
Confidence 5677766666 44 6788888854 4555543 355778888888876421 1123332 3566778888887
Q ss_pred ccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCC-CcCC-CCce
Q 014145 309 ADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDA-PKLN 386 (430)
Q Consensus 309 ~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~-~~L~ 386 (430)
.+ .++.+... ....+.+|+.+.+.+ +++.+..+ .+..+ +|+++.+.+. .+..++.+ +..+ .+++
T Consensus 308 ~~--~i~~I~~~-------aF~~c~~L~~l~lp~--~l~~I~~~-aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~ 373 (401)
T 4fdw_A 308 PE--SIRILGQG-------LLGGNRKVTQLTIPA--NVTQINFS-AFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDIT 373 (401)
T ss_dssp CT--TCCEECTT-------TTTTCCSCCEEEECT--TCCEECTT-SSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCC
T ss_pred CC--ceEEEhhh-------hhcCCCCccEEEECc--cccEEcHH-hCCCC-CCCEEEEcCC-CCcccccccccCCCCCcc
Confidence 53 24333211 112256777777743 57777653 23356 7888888765 33333322 3333 3566
Q ss_pred eeec
Q 014145 387 KVKP 390 (430)
Q Consensus 387 ~l~l 390 (430)
.|.+
T Consensus 374 ~l~v 377 (401)
T 4fdw_A 374 VIRV 377 (401)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6666
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.54 E-value=5.9e-07 Score=78.01 Aligned_cols=87 Identities=17% Similarity=0.170 Sum_probs=54.3
Q ss_pred CCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCccccc-CCcccCCCCCEEEEccCCCcccccCchhh
Q 014145 219 KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TPSWHLENLATLEVSKCHGLINVLTLSTS 297 (430)
Q Consensus 219 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~ 297 (430)
+..+++|+.|+++++ .++.+....+ ..+++|++|+++++. +..++ ..+..+++|+.|+++++ .+..++.. .+
T Consensus 50 ~~~l~~L~~L~Ls~N-~i~~i~~~~f---~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~-~~ 122 (193)
T 2wfh_A 50 LSNYKHLTLIDLSNN-RISTLSNQSF---SNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGN-DISVVPEG-AF 122 (193)
T ss_dssp GGGCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSS-CCCBCCTT-TT
T ss_pred hhcccCCCEEECCCC-cCCEeCHhHc---cCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCC-CCCeeChh-hh
Confidence 455677777777774 5666655555 667777777777753 44443 34556777777777774 45555442 24
Q ss_pred ccccccceEeecccc
Q 014145 298 ESLVNLGRMKIADCK 312 (430)
Q Consensus 298 ~~l~~L~~L~l~~c~ 312 (430)
..+++|+.|++++++
T Consensus 123 ~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 123 NDLSALSHLAIGANP 137 (193)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred hcCccccEEEeCCCC
Confidence 556777777776543
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.51 E-value=8.1e-07 Score=75.79 Aligned_cols=84 Identities=18% Similarity=0.177 Sum_probs=45.0
Q ss_pred CCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccC
Q 014145 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 157 (430)
Q Consensus 78 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~ 157 (430)
.++|+.|+++++. +..+++ ..++.+++|++|++++| .+..+ +...+..+++|++|+++++ .+..++.
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~---------~~~~~~~l~~L~~L~l~~N-~l~~~~~ 93 (177)
T 2o6r_A 27 PSSATRLELESNK-LQSLPH-GVFDKLTQLTKLSLSQN-QIQSL---------PDGVFDKLTKLTILYLHEN-KLQSLPN 93 (177)
T ss_dssp CTTCSEEECCSSC-CCCCCT-TTTTTCTTCSEEECCSS-CCCCC---------CTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCCCcEEEeCCCc-ccEeCH-HHhcCcccccEEECCCC-cceEe---------ChhHccCCCccCEEECCCC-CccccCH
Confidence 4566666666652 444322 22455666777777666 34444 3343456666677766664 3443432
Q ss_pred CccccccCCCccEEEeccC
Q 014145 158 FTENIIEMPELRYLAIENC 176 (430)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~c 176 (430)
. ....+++|++|++.++
T Consensus 94 ~--~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 94 G--VFDKLTQLKELALDTN 110 (177)
T ss_dssp T--TTTTCTTCCEEECCSS
T ss_pred H--HhhCCcccCEEECcCC
Confidence 1 1344556666666555
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.47 E-value=1.4e-06 Score=74.30 Aligned_cols=86 Identities=24% Similarity=0.177 Sum_probs=52.9
Q ss_pred CCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCC-cccCCCCCEEEEccCCCcccccCchhhc
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSE 298 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~ 298 (430)
..+++|++|+++++ .++.+....+ ..+++|+.|+++++ .++.++.. +..+++|+.|+++++ .+..++.. .+.
T Consensus 49 ~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~ 121 (177)
T 2o6r_A 49 DKLTQLTKLSLSQN-QIQSLPDGVF---DKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDG-IFD 121 (177)
T ss_dssp TTCTTCSEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTT
T ss_pred cCcccccEEECCCC-cceEeChhHc---cCCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCC-cceEeCHH-Hhc
Confidence 45667777777764 5565554444 56677777777775 34444433 456677777777765 45555442 235
Q ss_pred cccccceEeecccc
Q 014145 299 SLVNLGRMKIADCK 312 (430)
Q Consensus 299 ~l~~L~~L~l~~c~ 312 (430)
.+++|++|++++++
T Consensus 122 ~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 122 RLTSLQKIWLHTNP 135 (177)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CCcccCEEEecCCC
Confidence 56777777776654
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.42 E-value=2.6e-05 Score=75.64 Aligned_cols=211 Identities=12% Similarity=0.130 Sum_probs=124.5
Q ss_pred CCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCC
Q 014145 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 130 (430)
.+|+.+.+... ++.+.... +. . .+|+.+.+.. ++..+.. +.+.+|.+|+.+++.++ .+..+
T Consensus 135 ~~L~~i~l~~~--i~~I~~~a-F~--~-~~L~~i~lp~--~l~~I~~-~aF~~c~~L~~l~l~~n-~l~~I--------- 195 (401)
T 4fdw_A 135 SQIAKVVLNEG--LKSIGDMA-FF--N-STVQEIVFPS--TLEQLKE-DIFYYCYNLKKADLSKT-KITKL--------- 195 (401)
T ss_dssp CCCSEEECCTT--CCEECTTT-TT--T-CCCCEEECCT--TCCEECS-STTTTCTTCCEEECTTS-CCSEE---------
T ss_pred CCccEEEeCCC--ccEECHHh-cC--C-CCceEEEeCC--CccEehH-HHhhCcccCCeeecCCC-cceEe---------
Confidence 46777776543 55554443 21 1 4688888875 5555433 33777888888888776 56666
Q ss_pred ccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc-----CCCceEEEecCCCCCcccCCCc
Q 014145 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKLTSEEN 205 (430)
Q Consensus 131 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~~~~~~~ 205 (430)
+.+.+. ..+|+.+.+.. .+..+.. .....+++|+.+.+.+ .++.++ ..+|+.+.+..+ +..+..
T Consensus 196 ~~~aF~-~~~L~~l~lp~--~l~~I~~--~aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp~~-i~~I~~--- 264 (401)
T 4fdw_A 196 PASTFV-YAGIEEVLLPV--TLKEIGS--QAFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLPNG-VTNIAS--- 264 (401)
T ss_dssp CTTTTT-TCCCSEEECCT--TCCEECT--TTTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEETT-CCEECT---
T ss_pred chhhEe-ecccCEEEeCC--chheehh--hHhhCCCCCCEEecCC--CccCccccccccCCccEEEeCCC-ccEECh---
Confidence 455544 47788887764 3555532 2255677788877764 244433 245666666332 222220
Q ss_pred eeeecCcccccccCCCCCCCCEEecccCC----CceeeccCCchhhhhcccccEEEeecCCCcccccC-CcccCCCCCEE
Q 014145 206 FFLTDQIQPLFDEKVAFPQLRYLELSRLH----KVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATL 280 (430)
Q Consensus 206 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L 280 (430)
.....+++|+++.+.+.. .+..+....| ..+++|+.+.+.+ .++.+.. .+..+++|+.+
T Consensus 265 -----------~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF---~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 265 -----------RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL---EGCPKLARFEIPE--SIRILGQGLLGGNRKVTQL 328 (401)
T ss_dssp -----------TTTTTCTTCCEEEEESSCCCCCTTCEECTTTT---TTCTTCCEECCCT--TCCEECTTTTTTCCSCCEE
T ss_pred -----------hHhhCCCCCCEEEeCCccccCCcccEECHHHh---hCCccCCeEEeCC--ceEEEhhhhhcCCCCccEE
Confidence 124567778888776531 1224555555 6777888887764 3555543 34466778888
Q ss_pred EEccCCCcccccCchhhccccccceEeeccc
Q 014145 281 EVSKCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 281 ~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c 311 (430)
.+.. +++.+...+ +..+ +|+.+++...
T Consensus 329 ~lp~--~l~~I~~~a-F~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 329 TIPA--NVTQINFSA-FNNT-GIKEVKVEGT 355 (401)
T ss_dssp EECT--TCCEECTTS-SSSS-CCCEEEECCS
T ss_pred EECc--cccEEcHHh-CCCC-CCCEEEEcCC
Confidence 7754 355555443 3455 7888887654
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.42 E-value=2.5e-07 Score=96.94 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=81.4
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
+...+.....+++|+.|+|+++. +..++... ..+++|++|+++++ .+.. .|.. +..+++|++|++++|. +.
T Consensus 213 ~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~----~~l~~L~~L~Ls~N-~l~~-lp~~-~~~l~~L~~L~Ls~N~-l~ 283 (727)
T 4b8c_D 213 MVMPKDSKYDDQLWHALDLSNLQ-IFNISANI----FKYDFLTRLYLNGN-SLTE-LPAE-IKNLSNLRVLDLSHNR-LT 283 (727)
T ss_dssp ---------CCCCCCEEECTTSC-CSCCCGGG----GGCCSCSCCBCTTS-CCSC-CCGG-GGGGTTCCEEECTTSC-CS
T ss_pred eecChhhhccCCCCcEEECCCCC-CCCCChhh----cCCCCCCEEEeeCC-cCcc-cChh-hhCCCCCCEEeCcCCc-CC
Confidence 33345556678889999998877 66555444 56889999999987 4554 3443 6789999999999984 55
Q ss_pred EecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
.+ |..+ ..+++|++|+++++ .+..+|.. +..+++|++|++.++.
T Consensus 284 ~l---------p~~~-~~l~~L~~L~L~~N-~l~~lp~~---~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 284 SL---------PAEL-GSCFQLKYFYFFDN-MVTTLPWE---FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SC---------CSSG-GGGTTCSEEECCSS-CCCCCCSS---TTSCTTCCCEECTTSC
T ss_pred cc---------Chhh-cCCCCCCEEECCCC-CCCccChh---hhcCCCccEEeCCCCc
Confidence 55 5665 78899999999886 56677665 7788899999998876
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.42 E-value=6.4e-07 Score=91.05 Aligned_cols=186 Identities=14% Similarity=0.086 Sum_probs=112.0
Q ss_pred chhhhhhhcccCCCCcceeecccccCCeee--------ccCCCCC--CCCCCCcceEE-EeCCCCCCccCch----hHHH
Q 014145 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEI--------WHGQALP--VSFFNNLRHLV-VDDCTNMLSAIPA----NLIR 102 (430)
Q Consensus 38 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~--------~~~~~~~--~~~l~~L~~L~-l~~c~~l~~~~~~----~~~~ 102 (430)
+.+..+|.++..+++|+.|+++++..+... ..+. .| .+.+++|+.|+ ++. ..+..+... ..+.
T Consensus 359 n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~-~~~~l~~l~~L~~L~~l~~-n~~~~L~~l~l~~n~i~ 436 (567)
T 1dce_A 359 EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDPMRA-AYLDDLRSKFLLENSVL 436 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG-HHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHHHH
T ss_pred hhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccC-CHHHHHHHHhcccCcchhh-cccchhhhhhhhccccc
Confidence 456788888888899999887654210000 0000 01 13467777777 332 112111110 0011
Q ss_pred h--cCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcc
Q 014145 103 C--LNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDME 180 (430)
Q Consensus 103 ~--l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 180 (430)
. ...|++|++++| .+..+ |. +..+++|+.|+++++ .+..+|.. +..+++|++|+++++. ++
T Consensus 437 ~l~~~~L~~L~Ls~n-~l~~l---------p~--~~~l~~L~~L~Ls~N-~l~~lp~~---~~~l~~L~~L~Ls~N~-l~ 499 (567)
T 1dce_A 437 KMEYADVRVLHLAHK-DLTVL---------CH--LEQLLLVTHLDLSHN-RLRALPPA---LAALRCLEVLQASDNA-LE 499 (567)
T ss_dssp HHHHTTCSEEECTTS-CCSSC---------CC--GGGGTTCCEEECCSS-CCCCCCGG---GGGCTTCCEEECCSSC-CC
T ss_pred ccCccCceEEEecCC-CCCCC---------cC--ccccccCcEeecCcc-cccccchh---hhcCCCCCEEECCCCC-CC
Confidence 1 236999999998 56655 44 488899999999986 56677654 7889999999999875 44
Q ss_pred cccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeec-cCCchhhhhcccccEEEee
Q 014145 181 TFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLW-KENDESNKAFANLIRLKIS 259 (430)
Q Consensus 181 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~l~~L~~L~l~ 259 (430)
.++ .++.+++|+.|+++++ .++.+. +..+ ..+++|+.|+++
T Consensus 500 ~lp----------------------------------~l~~l~~L~~L~Ls~N-~l~~~~~p~~l---~~l~~L~~L~L~ 541 (567)
T 1dce_A 500 NVD----------------------------------GVANLPRLQELLLCNN-RLQQSAAIQPL---VSCPRLVLLNLQ 541 (567)
T ss_dssp CCG----------------------------------GGTTCSSCCEEECCSS-CCCSSSTTGGG---GGCTTCCEEECT
T ss_pred CCc----------------------------------ccCCCCCCcEEECCCC-CCCCCCCcHHH---hcCCCCCEEEec
Confidence 332 2356677777777764 555543 3333 667777777777
Q ss_pred cCCCcccccCCc----ccCCCCCEEE
Q 014145 260 ECSKLQKLVTPS----WHLENLATLE 281 (430)
Q Consensus 260 ~c~~l~~l~~~l----~~l~~L~~L~ 281 (430)
+++ +..+|... ..+++|+.|+
T Consensus 542 ~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 542 GNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp TSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCc-CCCCccHHHHHHHHCcccCccC
Confidence 753 44443322 2367777764
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.41 E-value=8.9e-08 Score=100.36 Aligned_cols=107 Identities=14% Similarity=0.058 Sum_probs=66.9
Q ss_pred HHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCc
Q 014145 100 LIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDM 179 (430)
Q Consensus 100 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l 179 (430)
.+..+++|+.|++++|. +..+ |..+ ..+++|++|+++++ .+..+|.. +..+++|++|++++|. +
T Consensus 219 ~~~~l~~L~~L~Ls~n~-l~~l---------~~~~-~~l~~L~~L~Ls~N-~l~~lp~~---~~~l~~L~~L~Ls~N~-l 282 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQ-IFNI---------SANI-FKYDFLTRLYLNGN-SLTELPAE---IKNLSNLRVLDLSHNR-L 282 (727)
T ss_dssp ---CCCCCCEEECTTSC-CSCC---------CGGG-GGCCSCSCCBCTTS-CCSCCCGG---GGGGTTCCEEECTTSC-C
T ss_pred hhccCCCCcEEECCCCC-CCCC---------Chhh-cCCCCCCEEEeeCC-cCcccChh---hhCCCCCCEEeCcCCc-C
Confidence 35667777777777774 4444 4444 46777777777775 44455543 6677777777777765 5
Q ss_pred cccc-----CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCcee
Q 014145 180 ETFI-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQH 238 (430)
Q Consensus 180 ~~~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 238 (430)
+.+| ..+|+.|++++|.+..+. ..++.+++|+.|+++++ .+..
T Consensus 283 ~~lp~~~~~l~~L~~L~L~~N~l~~lp---------------~~~~~l~~L~~L~L~~N-~l~~ 330 (727)
T 4b8c_D 283 TSLPAELGSCFQLKYFYFFDNMVTTLP---------------WEFGNLCNLQFLGVEGN-PLEK 330 (727)
T ss_dssp SSCCSSGGGGTTCSEEECCSSCCCCCC---------------SSTTSCTTCCCEECTTS-CCCS
T ss_pred CccChhhcCCCCCCEEECCCCCCCccC---------------hhhhcCCCccEEeCCCC-ccCC
Confidence 5444 346677777777665544 23566778888888875 4443
No 137
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=4.4e-07 Score=76.84 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=8.8
Q ss_pred cCCCCCEEEEccCCCccc
Q 014145 273 HLENLATLEVSKCHGLIN 290 (430)
Q Consensus 273 ~l~~L~~L~l~~c~~l~~ 290 (430)
.+++|++|++++|..+++
T Consensus 83 ~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp TCSCCCEEEEESCTTCCH
T ss_pred CCCCCCEEEeCCCCccCH
Confidence 444555555555544444
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.30 E-value=2.1e-06 Score=72.81 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=57.4
Q ss_pred cceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCcc
Q 014145 53 IKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKE 132 (430)
Q Consensus 53 L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 132 (430)
.+.+++++.. ++.++ ....++|+.|+++++ .+..+.+. .+.++++|++|++++| .+..+ +.
T Consensus 11 ~~~l~~s~n~-l~~ip------~~~~~~l~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N-~l~~l---------~~ 71 (170)
T 3g39_A 11 GTTVDCSGKS-LASVP------TGIPTTTQVLYLYDN-QITKLEPG-VFDRLTQLTRLDLDNN-QLTVL---------PA 71 (170)
T ss_dssp TTEEECTTSC-CSSCC------SCCCTTCSEEECCSS-CCCCCCTT-TTTTCTTCSEEECCSS-CCCCC---------CT
T ss_pred CCEEEeCCCC-cCccC------ccCCCCCcEEEcCCC-cCCccChh-hhcCcccCCEEECCCC-CcCcc---------Ch
Confidence 3456665544 44422 222466777777765 34443332 2556777777777776 35554 44
Q ss_pred CcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 133 HIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 133 ~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
+.+..+++|++|+++++ .+..++.. .+..+++|++|++.+++
T Consensus 72 ~~f~~l~~L~~L~L~~N-~l~~~~~~--~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 72 GVFDKLTQLTQLSLNDN-QLKSIPRG--AFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTT--TTTTCTTCCEEECCSSC
T ss_pred hhccCCCCCCEEECCCC-ccCEeCHH--HhcCCCCCCEEEeCCCC
Confidence 44566677777777764 44444332 14456666666666654
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.27 E-value=2.8e-06 Score=72.34 Aligned_cols=85 Identities=19% Similarity=0.193 Sum_probs=45.4
Q ss_pred CCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccC
Q 014145 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 157 (430)
Q Consensus 78 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~ 157 (430)
.++|+.|+++++ .+..+++. .+.++++|++|++++| .+..+ |.+++..+++|++|+++++ .+..++.
T Consensus 32 ~~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~i---------~~~~~~~l~~L~~L~L~~N-~l~~l~~ 98 (174)
T 2r9u_A 32 PTDKQRLWLNNN-QITKLEPG-VFDHLVNLQQLYFNSN-KLTAI---------PTGVFDKLTQLTQLDLNDN-HLKSIPR 98 (174)
T ss_dssp CTTCSEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCC---------CTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCCCcEEEeCCC-CccccCHH-HhcCCcCCCEEECCCC-CCCcc---------ChhHhCCcchhhEEECCCC-ccceeCH
Confidence 356666666665 34443332 2555666666666666 34444 4444456666666666653 4444432
Q ss_pred CccccccCCCccEEEeccCC
Q 014145 158 FTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~c~ 177 (430)
. .+..+++|++|.+.+++
T Consensus 99 ~--~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 99 G--AFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp T--TTTTCTTCSEEECCSSC
T ss_pred H--HhccccCCCEEEeCCCC
Confidence 1 13455666666665554
No 140
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.24 E-value=9.6e-05 Score=71.41 Aligned_cols=284 Identities=12% Similarity=0.058 Sum_probs=137.0
Q ss_pred CCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEec------
Q 014145 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVL------ 122 (430)
Q Consensus 49 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~------ 122 (430)
.+.+|+.+.+.. .++.+.... ...+++|+.+++.. ++..+ +...+.++.+|+.+.+... +..+.
T Consensus 69 ~c~~L~~i~lp~--~i~~I~~~a---F~~c~~L~~i~lp~--~l~~I-~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~ 138 (394)
T 4fs7_A 69 GCRKVTEIKIPS--TVREIGEFA---FENCSKLEIINIPD--SVKMI-GRCTFSGCYALKSILLPLM--LKSIGVEAFKG 138 (394)
T ss_dssp TCTTEEEEECCT--TCCEECTTT---TTTCTTCCEECCCT--TCCEE-CTTTTTTCTTCCCCCCCTT--CCEECTTTTTT
T ss_pred CCCCceEEEeCC--CccCcchhH---hhCCCCCcEEEeCC--CceEc-cchhhcccccchhhcccCc--eeeecceeeec
Confidence 456677777752 255443332 24567788887765 34443 3333566777776665432 22211
Q ss_pred -------ccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc------CCCceE
Q 014145 123 -------HLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVH 189 (430)
Q Consensus 123 -------~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~ 189 (430)
............+..+++|+.+.+.+ .+..+.. .....+++|+.+.+... ++.+. +..|+.
T Consensus 139 ~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~--~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 139 CDFKEITIPEGVTVIGDEAFATCESLEYVSLPD--SMETLHN--GLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLEN 212 (394)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECT--TTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCB
T ss_pred ccccccccCccccccchhhhcccCCCcEEecCC--ccceecc--ccccCCCCceEEEcCCC--ceEeCchhhccccccce
Confidence 11111112234457778888888864 2333422 22456777877777532 33222 234444
Q ss_pred EEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCccccc-
Q 014145 190 VTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV- 268 (430)
Q Consensus 190 L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~- 268 (430)
+.+..+... +. ........|+++.+.. .++.+....+ ..+..|+.+.+... ...+.
T Consensus 213 i~~~~~~~~-i~---------------~~~~~~~~l~~i~ip~--~~~~i~~~~f---~~~~~l~~~~~~~~--~~~i~~ 269 (394)
T 4fs7_A 213 MEFPNSLYY-LG---------------DFALSKTGVKNIIIPD--SFTELGKSVF---YGCTDLESISIQNN--KLRIGG 269 (394)
T ss_dssp CCCCTTCCE-EC---------------TTTTTTCCCCEEEECT--TCCEECSSTT---TTCSSCCEEEECCT--TCEECS
T ss_pred eecCCCceE-ee---------------hhhcccCCCceEEECC--Cceecccccc---cccccceeEEcCCC--cceeec
Confidence 444332210 00 1122345677776653 3455544444 56667777766542 22222
Q ss_pred CCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCce
Q 014145 269 TPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTS 348 (430)
Q Consensus 269 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 348 (430)
.....+..++.+..... .++.. .+..+.+|+.+.+.+ .++.+... ....+.+|+++++.+ +++.
T Consensus 270 ~~F~~~~~l~~~~~~~~----~i~~~-~F~~~~~L~~i~l~~--~i~~I~~~-------aF~~c~~L~~i~lp~--~v~~ 333 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSV----IVPEK-TFYGCSSLTEVKLLD--SVKFIGEE-------AFESCTSLVSIDLPY--LVEE 333 (394)
T ss_dssp CTTTTCTTCCEEEECSS----EECTT-TTTTCTTCCEEEECT--TCCEECTT-------TTTTCTTCCEECCCT--TCCE
T ss_pred cccccccccceeccCce----eeccc-ccccccccccccccc--ccceechh-------hhcCCCCCCEEEeCC--cccE
Confidence 22334555655555432 11111 234456666666642 12222100 111145566666542 3555
Q ss_pred eccCCcccCCCCccEEeeccCCCCcccCC-CCcCCCCceeeec
Q 014145 349 FCLGNYALEFPSLEHVVVRQCPTMKIFSQ-GVVDAPKLNKVKP 390 (430)
Q Consensus 349 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~l~l 390 (430)
++.+ .+..|.+|+++.+.. .++.+.. .+..+++|+++.+
T Consensus 334 I~~~-aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 334 IGKR-SFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp ECTT-TTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEE
T ss_pred EhHH-hccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEE
Confidence 5442 233566677776643 2544443 2455667777766
No 141
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.22 E-value=1.1e-06 Score=74.33 Aligned_cols=94 Identities=11% Similarity=0.144 Sum_probs=68.6
Q ss_pred CCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCc
Q 014145 275 ENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNY 354 (430)
Q Consensus 275 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~ 354 (430)
..|++|++++|. +++.... .+..+++|+.|++++|..+.+....... ......++|++|++++|+++++-....
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~---~~~~~~~~L~~L~Ls~C~~ITD~Gl~~- 134 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLS---QLENLQKSMLEMEIISCGNVTDKGIIA- 134 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHH---TCHHHHHHCCEEEEESCTTCCHHHHHH-
T ss_pred ceEeEEeCcCCC-ccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHH---hcccccCCCCEEEcCCCCcCCHHHHHH-
Confidence 478999999986 6665433 2468999999999999987764322100 000013579999999999999866532
Q ss_pred ccCCCCccEEeeccCCCCcc
Q 014145 355 ALEFPSLEHVVVRQCPTMKI 374 (430)
Q Consensus 355 ~~~~~~L~~L~l~~c~~l~~ 374 (430)
...+++|++|++++|+.++.
T Consensus 135 L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGGCTTCCEEEEESCTTCCC
T ss_pred HhcCCCCCEEECCCCCCCCc
Confidence 33589999999999999875
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.19 E-value=3e-08 Score=86.55 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=52.8
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
++.++..+..+++|++|+++++. +..++ .. ..+++|+.|++++| .+..++. .+..+++|++|++++| .+.
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~----~~l~~L~~L~l~~n-~l~~l~~--~~~~~~~L~~L~L~~N-~l~ 106 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNN-IEKIS-SL----SGMENLRILSLGRN-LIKKIEN--LDAVADTLEELWISYN-QIA 106 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEE-ESCCC-CH----HHHTTCCEEEEEEE-EECSCSS--HHHHHHHCSEEEEEEE-ECC
T ss_pred HhhhhHHHhcCCCCCEEECCCCC-Ccccc-cc----ccCCCCCEEECCCC-Ccccccc--hhhcCCcCCEEECcCC-cCC
Confidence 33444444555566666665554 44322 11 34556666666655 2333222 2344555666666655 233
Q ss_pred EecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
.+ | + +..+++|++|+++++ .+..++... .+..+++|++|++.+|+
T Consensus 107 ~l---------~-~-~~~l~~L~~L~l~~N-~i~~~~~~~-~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 107 SL---------S-G-IEKLVNLRVLYMSNN-KITNWGEID-KLAALDKLEDLLLAGNP 151 (198)
T ss_dssp CH---------H-H-HHHHHHSSEEEESEE-ECCCHHHHH-HHTTTTTCSEEEECSCH
T ss_pred cC---------C-c-cccCCCCCEEECCCC-cCCchhHHH-HHhcCCCCCEEEecCCc
Confidence 33 1 1 244555666665553 232221100 13445555555555543
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.19 E-value=4.1e-08 Score=85.69 Aligned_cols=15 Identities=13% Similarity=0.253 Sum_probs=7.3
Q ss_pred HHhcCCCCEEEEecC
Q 014145 101 IRCLNNLRWLEVRNC 115 (430)
Q Consensus 101 ~~~l~~L~~L~l~~~ 115 (430)
+..+++|++|++++|
T Consensus 44 ~~~l~~L~~L~ls~n 58 (198)
T 1ds9_A 44 LSTLKACKHLALSTN 58 (198)
T ss_dssp HHHTTTCSEEECSEE
T ss_pred HhcCCCCCEEECCCC
Confidence 344455555555444
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.07 E-value=0.0002 Score=69.08 Aligned_cols=59 Identities=5% Similarity=-0.035 Sum_probs=41.0
Q ss_pred CCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCC
Q 014145 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMD 148 (430)
Q Consensus 76 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~ 148 (430)
..+.+|+.+.+.. ++..+ ....+.+|.+|+.+++..+ +..+ +...+..+++|+.+.+..
T Consensus 68 ~~c~~L~~i~lp~--~i~~I-~~~aF~~c~~L~~i~lp~~--l~~I---------~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 68 QGCRKVTEIKIPS--TVREI-GEFAFENCSKLEIINIPDS--VKMI---------GRCTFSGCYALKSILLPL 126 (394)
T ss_dssp TTCTTEEEEECCT--TCCEE-CTTTTTTCTTCCEECCCTT--CCEE---------CTTTTTTCTTCCCCCCCT
T ss_pred hCCCCceEEEeCC--CccCc-chhHhhCCCCCcEEEeCCC--ceEc---------cchhhcccccchhhcccC
Confidence 4567888888875 56664 3344788999999999753 6666 445567777777766653
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.06 E-value=2e-05 Score=66.63 Aligned_cols=83 Identities=17% Similarity=0.123 Sum_probs=44.9
Q ss_pred CCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCC-cccCCCCCEEEEccCCCcccccCchhhccc
Q 014145 222 FPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSESL 300 (430)
Q Consensus 222 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l 300 (430)
.++|+.|+++++ .++.+.+..+ ..+++|+.|+++++ .+..++.. +..+++|+.|+++++ .+..++.. .+..+
T Consensus 29 ~~~l~~L~L~~N-~i~~~~~~~~---~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~-~~~~l 101 (170)
T 3g39_A 29 PTTTQVLYLYDN-QITKLEPGVF---DRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRG-AFDNL 101 (170)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTT---TTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTC
T ss_pred CCCCcEEEcCCC-cCCccChhhh---cCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCHH-HhcCC
Confidence 356666666653 4555544444 55666666666664 34444433 345666666666654 34444432 24455
Q ss_pred cccceEeeccc
Q 014145 301 VNLGRMKIADC 311 (430)
Q Consensus 301 ~~L~~L~l~~c 311 (430)
++|++|+++++
T Consensus 102 ~~L~~L~L~~N 112 (170)
T 3g39_A 102 KSLTHIWLLNN 112 (170)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEEeCCC
Confidence 66666666554
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.00 E-value=3.3e-05 Score=65.63 Aligned_cols=82 Identities=18% Similarity=0.142 Sum_probs=45.9
Q ss_pred CCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCC-cccCCCCCEEEEccCCCcccccCchhhcccc
Q 014145 223 PQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSESLV 301 (430)
Q Consensus 223 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 301 (430)
++|+.|+++++ .++.+.+..+ ..+++|+.|+++++ .+..+|.. +..+++|+.|+++++ .+..++.. .+..++
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~ 105 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPGVF---DHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRG-AFDNLK 105 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCT
T ss_pred CCCcEEEeCCC-CccccCHHHh---cCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-ccceeCHH-Hhcccc
Confidence 56666666663 4555544444 55666666666664 44555543 245666666666664 34444432 244566
Q ss_pred ccceEeeccc
Q 014145 302 NLGRMKIADC 311 (430)
Q Consensus 302 ~L~~L~l~~c 311 (430)
+|++|+++++
T Consensus 106 ~L~~L~L~~N 115 (174)
T 2r9u_A 106 SLTHIYLYNN 115 (174)
T ss_dssp TCSEEECCSS
T ss_pred CCCEEEeCCC
Confidence 6666666654
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.91 E-value=2e-05 Score=74.75 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=66.9
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
.+..+|. +..+++|+.|+|++...++.+.... ...+++|+.|+++++ .+..+++. .+.++++|++|+|++| .+
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~---~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N-~l 92 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRD---LRGLGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFN-AL 92 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGG---SCSCCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSS-CC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhH---hccccCCCEEECCCC-ccceeCHH-HhcCCcCCCEEeCCCC-cc
Confidence 3666777 7788889999998644477755432 156889999999987 46665544 3678899999999988 46
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCc
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDL 149 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~ 149 (430)
..+ |.+++..++ |+.|++.++
T Consensus 93 ~~~---------~~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 93 ESL---------SWKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp SCC---------CSTTTCSCC-CCEEECCSS
T ss_pred cee---------CHHHcccCC-ceEEEeeCC
Confidence 665 455545555 888888774
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.86 E-value=1.6e-05 Score=75.93 Aligned_cols=68 Identities=19% Similarity=0.221 Sum_probs=43.8
Q ss_pred CCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCccc-----ccCCcccCCCCCEEEEccCCCccc
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQK-----LVTPSWHLENLATLEVSKCHGLIN 290 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-----l~~~l~~l~~L~~L~l~~c~~l~~ 290 (430)
..+|+|+.|.+.+|. +.......+.....+++|++|+++.+ .+.. ++..+..+++|+.|+++.|. +.+
T Consensus 249 ~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d 321 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY-LSD 321 (362)
T ss_dssp TTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCH
T ss_pred CCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc-CCH
Confidence 458899999998864 32211111111135789999999875 4442 44555678999999999874 443
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.83 E-value=3.6e-05 Score=72.92 Aligned_cols=102 Identities=21% Similarity=0.179 Sum_probs=65.1
Q ss_pred eecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcC
Q 014145 56 LQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIG 135 (430)
Q Consensus 56 L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~ 135 (430)
++.++..++..++. . ..+++|+.|+++++..+..+++. .+.++++|++|++++| .+..+ +...+
T Consensus 13 v~~~~~n~l~~ip~-l----~~~~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~---------~~~~~ 76 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-L----PGAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKS-GLRFV---------APDAF 76 (347)
T ss_dssp EECCSSCCCTTTTT-S----CSCSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSS-CCCEE---------CTTGG
T ss_pred EEcCCCCCCCccCC-C----CCCCCeeEEEccCCCCCCCcChh-HhccccCCCEEECCCC-cccee---------CHHHh
Confidence 45544423555443 3 45678888888864456665443 3677888888888888 57666 45555
Q ss_pred CcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 136 PLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 136 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
..+++|+.|+|+++ .+..++.. ......|+.|.+.+++
T Consensus 77 ~~l~~L~~L~l~~N-~l~~~~~~---~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 77 HFTPRLSRLNLSFN-ALESLSWK---TVQGLSLQELVLSGNP 114 (347)
T ss_dssp GSCSCCCEEECCSS-CCSCCCST---TTCSCCCCEEECCSSC
T ss_pred cCCcCCCEEeCCCC-ccceeCHH---HcccCCceEEEeeCCC
Confidence 77888888888874 56666543 2222237777777655
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.80 E-value=7.7e-07 Score=85.59 Aligned_cols=43 Identities=12% Similarity=-0.086 Sum_probs=25.8
Q ss_pred CCCCCCCEEecccCCCceeeccCCch-hhhhcccccEEEeecCCC
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDE-SNKAFANLIRLKISECSK 263 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~c~~ 263 (430)
...++|++|++++| .+++.....+. .....++|++|+++++..
T Consensus 208 ~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 208 DRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp GGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred hcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 34567888888875 55554332221 113457888888888653
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.73 E-value=1.9e-05 Score=75.31 Aligned_cols=15 Identities=7% Similarity=-0.122 Sum_probs=10.8
Q ss_pred HHhcCCCCEEEEecC
Q 014145 101 IRCLNNLRWLEVRNC 115 (430)
Q Consensus 101 ~~~l~~L~~L~l~~~ 115 (430)
...+++|+.|.+.+.
T Consensus 135 ~~~l~~L~~L~l~~~ 149 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDI 149 (362)
T ss_dssp HHHHTTCSEEEECCC
T ss_pred hhhcchhhheeecCc
Confidence 446788888888653
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.61 E-value=0.012 Score=56.43 Aligned_cols=103 Identities=11% Similarity=0.118 Sum_probs=56.0
Q ss_pred cCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccC
Q 014145 273 HLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLG 352 (430)
Q Consensus 273 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 352 (430)
.+..|+.+.+.. .+..+... .+..++.|+.+.+.. .+..+... ....+.+|+++.+-+ +++.+...
T Consensus 263 ~c~~L~~i~lp~--~~~~I~~~-aF~~c~~L~~i~l~~--~i~~I~~~-------aF~~c~~L~~i~lp~--~v~~I~~~ 328 (394)
T 4gt6_A 263 SCAYLASVKMPD--SVVSIGTG-AFMNCPALQDIEFSS--RITELPES-------VFAGCISLKSIDIPE--GITQILDD 328 (394)
T ss_dssp TCSSCCEEECCT--TCCEECTT-TTTTCTTCCEEECCT--TCCEECTT-------TTTTCTTCCEEECCT--TCCEECTT
T ss_pred ecccccEEeccc--ccceecCc-ccccccccccccCCC--cccccCce-------eecCCCCcCEEEeCC--cccEehHh
Confidence 445566665542 22333222 234566677766642 22222110 111256777777753 46666542
Q ss_pred CcccCCCCccEEeeccCCCCcccCC-CCcCCCCceeeeccc
Q 014145 353 NYALEFPSLEHVVVRQCPTMKIFSQ-GVVDAPKLNKVKPTE 392 (430)
Q Consensus 353 ~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~l~l~~ 392 (430)
.+..|.+|+++.+.. .++.+.. .+..+.+|+.+++.+
T Consensus 329 -aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 329 -AFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp -TTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred -HhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 234678888888853 4555543 355778888888855
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.60 E-value=6.9e-06 Score=78.91 Aligned_cols=70 Identities=13% Similarity=-0.027 Sum_probs=43.9
Q ss_pred CCCCCCCEEecccCCCceeeccCCc-hhhhhcccccEEEeecCCCcc----cccCCcccCCCCCEEEEccCCCcccc
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKEND-ESNKAFANLIRLKISECSKLQ----KLVTPSWHLENLATLEVSKCHGLINV 291 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~----~l~~~l~~l~~L~~L~l~~c~~l~~l 291 (430)
...++|++|+++++ .+.+.....+ ......++|+.|++++|..-. .+...+...++|++|++++|. +.+.
T Consensus 180 ~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~ 254 (372)
T 3un9_A 180 AGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE-LSSE 254 (372)
T ss_dssp HTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHH
T ss_pred hcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHH
Confidence 45678999999886 4544221111 011456789999999985432 233334467889999999874 5443
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.52 E-value=0.019 Score=55.13 Aligned_cols=142 Identities=13% Similarity=0.148 Sum_probs=79.5
Q ss_pred CCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccC-CcccCCCCCEEEEccCCCcccccCchhhccccc
Q 014145 224 QLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESLVN 302 (430)
Q Consensus 224 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 302 (430)
.+..+.+. ..++.+....+ ..+.+|+.+.+.. ....+.. ....+++|+.+.+. ..++.++..+ +..+.+
T Consensus 243 ~~~~~~ip--~~v~~i~~~aF---~~c~~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~a-F~~c~~ 312 (394)
T 4gt6_A 243 EDPAFKIP--NGVARIETHAF---DSCAYLASVKMPD--SVVSIGTGAFMNCPALQDIEFS--SRITELPESV-FAGCIS 312 (394)
T ss_dssp CCSEEECC--TTEEEECTTTT---TTCSSCCEEECCT--TCCEECTTTTTTCTTCCEEECC--TTCCEECTTT-TTTCTT
T ss_pred ccceEEcC--CcceEccccee---eecccccEEeccc--ccceecCcccccccccccccCC--CcccccCcee-ecCCCC
Confidence 34444443 24566555555 7778888888754 2333332 34577888888886 3566665543 567888
Q ss_pred cceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCC
Q 014145 303 LGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDA 382 (430)
Q Consensus 303 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 382 (430)
|+.+.+.+ .++.+... ....+.+|+++.+-+ +++.+... .+..|++|+.+.+.+... .. ......
T Consensus 313 L~~i~lp~--~v~~I~~~-------aF~~C~~L~~i~ip~--sv~~I~~~-aF~~C~~L~~i~~~~~~~--~~-~~~~~~ 377 (394)
T 4gt6_A 313 LKSIDIPE--GITQILDD-------AFAGCEQLERIAIPS--SVTKIPES-AFSNCTALNNIEYSGSRS--QW-NAISTD 377 (394)
T ss_dssp CCEEECCT--TCCEECTT-------TTTTCTTCCEEEECT--TCCBCCGG-GGTTCTTCCEEEESSCHH--HH-HTCBCC
T ss_pred cCEEEeCC--cccEehHh-------HhhCCCCCCEEEECc--ccCEEhHh-HhhCCCCCCEEEECCcee--eh-hhhhcc
Confidence 99988853 23333210 112267788887742 46666542 234688899988876321 11 123345
Q ss_pred CCceeeec
Q 014145 383 PKLNKVKP 390 (430)
Q Consensus 383 ~~L~~l~l 390 (430)
.+|+.+.+
T Consensus 378 ~~L~~i~i 385 (394)
T 4gt6_A 378 SGLQNLPV 385 (394)
T ss_dssp CCC-----
T ss_pred CCCCEEEe
Confidence 66777766
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.97 E-value=0.12 Score=48.89 Aligned_cols=77 Identities=16% Similarity=0.139 Sum_probs=34.7
Q ss_pred CCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccC-CcccCCCCCEEEEccCCCcccccCchhhcccc
Q 014145 223 PQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESLV 301 (430)
Q Consensus 223 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 301 (430)
..|+.+.+.. .++.+....+ ..+..|+.+.+-. .++.+.. ....+.+|+.+.+.. .++.++.. .+..+.
T Consensus 217 ~~l~~i~~~~--~~~~i~~~~f---~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~-aF~~c~ 286 (379)
T 4h09_A 217 KNLKKITITS--GVTTLGDGAF---YGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA--KVKTVPYL-LCSGCS 286 (379)
T ss_dssp SSCSEEECCT--TCCEECTTTT---TTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECC--CCSEECTT-TTTTCT
T ss_pred cccceeeecc--ceeEEccccc---cCCccceEEEcCC--CccEeCccccceeehhccccccc--cceecccc-cccccc
Confidence 3444444432 2344433333 4455555555543 2333322 233455566665542 34444332 234555
Q ss_pred ccceEeec
Q 014145 302 NLGRMKIA 309 (430)
Q Consensus 302 ~L~~L~l~ 309 (430)
+|+.+.+.
T Consensus 287 ~L~~i~l~ 294 (379)
T 4h09_A 287 NLTKVVMD 294 (379)
T ss_dssp TCCEEEEC
T ss_pred cccccccc
Confidence 66666664
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.64 E-value=0.47 Score=44.82 Aligned_cols=56 Identities=13% Similarity=0.223 Sum_probs=25.7
Q ss_pred hhcccccEEEeecCCCcccccC-CcccCCCCCEEEEccCCCcccccCchhhccccccceEee
Q 014145 248 KAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKI 308 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l 308 (430)
..+.+|+.+.+.. .+..+.. ....+..|+.+.+.. .++.+... .+..+..|+.+.+
T Consensus 214 ~~~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~~-aF~~~~~l~~i~l 270 (379)
T 4h09_A 214 SYGKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPK--NVTSIGSF-LLQNCTALKTLNF 270 (379)
T ss_dssp TTCSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECT--TCCEECTT-TTTTCTTCCEEEE
T ss_pred ccccccceeeecc--ceeEEccccccCCccceEEEcCC--CccEeCcc-ccceeehhccccc
Confidence 4455565555543 2333322 223455666666643 24443332 1344555666655
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.49 E-value=0.013 Score=52.88 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=20.8
Q ss_pred CCCCcceEEEeCCCCCCccCch-hHHHhcCCCCEEEEecC
Q 014145 77 FFNNLRHLVVDDCTNMLSAIPA-NLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 77 ~l~~L~~L~l~~c~~l~~~~~~-~~~~~l~~L~~L~l~~~ 115 (430)
.+++|+.|+++++ .+..+.+. ..+..+++|+.|++++|
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC
Confidence 3566666666664 34432221 23456666666666666
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.00 E-value=0.0071 Score=51.48 Aligned_cols=91 Identities=13% Similarity=-0.011 Sum_probs=44.3
Q ss_pred CCCCCCCEEecccCCCceeeccCCc-hhhhhcccccEEEeecCCCcc----cccCCcccCCCCCEEEE--ccCCCccccc
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKEND-ESNKAFANLIRLKISECSKLQ----KLVTPSWHLENLATLEV--SKCHGLINVL 292 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~----~l~~~l~~l~~L~~L~l--~~c~~l~~l~ 292 (430)
...++|++|+++++ .+.+.....+ ......++|++|+++++..-. .+...+...+.|++|++ +++ .+.+-.
T Consensus 62 ~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g 139 (185)
T 1io0_A 62 KTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNV 139 (185)
T ss_dssp TTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHH
T ss_pred HhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHH
Confidence 34566777777765 3333111111 011334567777777654322 13334555567777777 433 344322
Q ss_pred Cch---hhccccccceEeecccc
Q 014145 293 TLS---TSESLVNLGRMKIADCK 312 (430)
Q Consensus 293 ~~~---~~~~l~~L~~L~l~~c~ 312 (430)
... .+...+.|++|++++|.
T Consensus 140 ~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 140 EMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHhCCCcCEEeccCCC
Confidence 111 12334567777776653
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.97 E-value=0.0052 Score=52.35 Aligned_cols=64 Identities=13% Similarity=-0.017 Sum_probs=31.8
Q ss_pred CCCCCEEecccCCCceeeccCCc-hhhhhcccccEEEe--ecCCCcc----cccCCcccCCCCCEEEEccCC
Q 014145 222 FPQLRYLELSRLHKVQHLWKEND-ESNKAFANLIRLKI--SECSKLQ----KLVTPSWHLENLATLEVSKCH 286 (430)
Q Consensus 222 ~~~L~~L~l~~~~~l~~~~~~~~-~~~~~l~~L~~L~l--~~c~~l~----~l~~~l~~l~~L~~L~l~~c~ 286 (430)
.+.|++|+++++ .+.+.....+ ......++|++|++ +++..-. .+...+...+.|++|++++|.
T Consensus 92 n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 92 NNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 456677777664 3333111100 01144456777777 4443211 122334455778888887763
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.67 E-value=0.033 Score=50.31 Aligned_cols=12 Identities=33% Similarity=0.376 Sum_probs=5.9
Q ss_pred cCCCCCEEEEcc
Q 014145 273 HLENLATLEVSK 284 (430)
Q Consensus 273 ~l~~L~~L~l~~ 284 (430)
.+++|+.|++++
T Consensus 194 ~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 194 KAPNLKILNLSG 205 (267)
T ss_dssp HSTTCCEEECTT
T ss_pred hCCCCCEEECCC
Confidence 444555555544
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=80.31 E-value=3 Score=32.68 Aligned_cols=34 Identities=15% Similarity=0.042 Sum_probs=17.7
Q ss_pred CCCCEEecccCCCceeeccCCchhhhhcccccEEEeec
Q 014145 223 PQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISE 260 (430)
Q Consensus 223 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 260 (430)
++|+.|+|++ +.++.+....+ ..+++|+.|+|.+
T Consensus 31 ~~l~~L~Ls~-N~l~~l~~~~f---~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 31 VDTTELVLTG-NNLTALPPGLL---DALPALRTAHLGA 64 (130)
T ss_dssp TTCSEEECTT-SCCSSCCTTTG---GGCTTCCEEECCS
T ss_pred cCCCEEECCC-CcCCccChhhh---hhccccCEEEecC
Confidence 3556666655 34555544444 4455555555554
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=80.06 E-value=1.5 Score=34.42 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=16.5
Q ss_pred CcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecC
Q 014145 80 NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 80 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 115 (430)
+|+.|++++. ++.. .+.+.+..+++|++|+|++|
T Consensus 32 ~l~~L~Ls~N-~l~~-l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGN-NLTA-LPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTS-CCSS-CCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCC-cCCc-cChhhhhhccccCEEEecCC
Confidence 4555555553 2333 23333455555555555554
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=70.90 E-value=2 Score=36.47 Aligned_cols=65 Identities=6% Similarity=0.025 Sum_probs=32.5
Q ss_pred CCCCCCCEEecccCCCceeeccCCch-hhhhcccccEEEeecCCCcc----cccCCcccCCCCCEEEEccC
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDE-SNKAFANLIRLKISECSKLQ----KLVTPSWHLENLATLEVSKC 285 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~c~~l~----~l~~~l~~l~~L~~L~l~~c 285 (430)
..-+.|+.|+++++ .+.+.....++ +...-+.|++|+|+++..-. .+...+..-+.|++|+++++
T Consensus 67 ~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 67 CNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp TTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred hhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 34556777777764 34432222221 11334667777777653221 22223344445777777654
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=48.81 E-value=12 Score=31.58 Aligned_cols=13 Identities=15% Similarity=0.179 Sum_probs=7.7
Q ss_pred hcCCCCEEEEecC
Q 014145 103 CLNNLRWLEVRNC 115 (430)
Q Consensus 103 ~l~~L~~L~l~~~ 115 (430)
+-+.|++|+++++
T Consensus 39 ~n~~L~~L~L~~n 51 (197)
T 1pgv_A 39 DDTDLKEVNINNM 51 (197)
T ss_dssp TCSSCCEEECTTC
T ss_pred cCCCccEEECCCC
Confidence 4456666666654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.95 E-value=70 Score=23.36 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=18.8
Q ss_pred cCcCCcCCccceeecCCccccccccCCccccccCCCccEEEecc
Q 014145 132 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIEN 175 (430)
Q Consensus 132 ~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 175 (430)
...+.++.+|+.+.+.. .+..+ +......|.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~--~v~~I--g~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQP--NIGLL--YDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECT--TSSCC--CTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCC--chheE--cHHHHhccCCccEEEEcC
Confidence 33445555666665543 23333 222244555555555543
Done!