BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014147
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PMI|A Chain A, Candida Albicans Phosphomannose Isomerase
Length = 440
Score = 270 bits (690), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 167/442 (37%), Positives = 253/442 (57%), Gaps = 40/442 (9%)
Query: 18 KPLRLQCAVKNYNWGIVGSKSHVSRLFCLNSGTHINPNE--PYAEFWIGTHESGAS-FLD 74
K R+QC +NY+WG +GS S V++ F NS I +E PYAE W+GTH S S +D
Sbjct: 4 KLFRIQCGYQNYDWGKIGSSSAVAQ-FVHNSDPSITIDETKPYAELWMGTHPSVPSKAID 62
Query: 75 HGGLSLKEWISKNP-DVLGDRVLNKWGG--DLPFLFKVLSVEKALSIQAHPDKELARTLH 131
+L++ ++ P + LG+ ++ K+G +LPFLFKVLS+EK LSIQAHPDK+L LH
Sbjct: 63 LNNQTLRDLVTAKPQEYLGESIITKFGSSKELPFLFKVLSIEKVLSIQAHPDKKLGAQLH 122
Query: 132 KSQPSLYSDENHKPEMALALTEFEALCGFISLKELRNVLCTVPEIVDLVGGADAEQC--- 188
+ P Y D+NHKPEMA+A+T+FE CGF L +L L TVPE+ +++G ++
Sbjct: 123 AADPKNYPDDNHKPEMAIAVTDFEGFCGFKPLDQLAKTLATVPELNEIIGQELVDEFISG 182
Query: 189 --FPVNEFGRSQEV--KAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKKRQLTDKEM 244
P E G +V + +++ +F +++ + D I + ++L R + E + + D +
Sbjct: 183 IKLPA-EVGSQDDVNNRKLLQKVFGKLMNTDDDVIKQQTAKLLERTDREPQVFKDIDSRL 241
Query: 245 --LVLRLEGQYPDDAGVL-AAFLLNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNV 301
L+ RL Q+P+D G+ LLN+V LN+GEA+ + A +PHAYI G+ IECMA SDNV
Sbjct: 242 PELIQRLNKQFPNDIGLFCGCLLLNHVGLNKGEAMFLQAKDPHAYISGDIIECMAASDNV 301
Query: 302 VRAGLTSKHRDIQTLFSMLNRR-----------QGFPQILKGISLNPYTTRYLPPFEEFE 350
VRAG T K +D++ L ML Q FP+ KG ++ + Y PP EF
Sbjct: 302 VRAGFTPKFKDVKNLVEMLTYSYESVEKQKMPLQEFPR-SKGDAVK--SVLYDPPIAEFS 358
Query: 351 VDCCVIPQA--ASLVFPSVAGPSLFLFISGNGT--LSAGFSKEQIVEEGEVLFVP--AYM 404
V + ++ V + GPS+ + +G GT ++ S +Q ++ G V FV + +
Sbjct: 359 VLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQITGDDSTKQKIDTGYVFFVAPGSSI 418
Query: 405 EFTI--ASQSKELHLYRAGVNS 424
E T A+Q ++ YRA V +
Sbjct: 419 ELTADSANQDQDFTTYRAFVEA 440
>pdb|3H1M|A Chain A, Crystal Structure Of Mannose 6-Phosphate Isomerase (Holo;
Zinc Bound)
pdb|3H1W|A Chain A, Crystal Structure Of Mannose 6-Phosphate Isomerase Bound
With Zinc And Yttrium
pdb|3H1Y|A Chain A, Crystal Structure Of Mannose 6-Phosphate Isomerase From
Salmonella Typhimurium Bound To Substrate (F6p)and Metal
Atom (Zn)
Length = 393
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 166/313 (53%), Gaps = 41/313 (13%)
Query: 21 RLQCAVKNYNWGIVGSKSHVSRLFCLNSGTHINPNE-PYAEFWIGTHESGASFLDHGG-- 77
+L +V+NY WG SK+ ++ L+ + NP + P AE W+G H +S +
Sbjct: 5 KLINSVQNYAWG---SKTALTELYGI-----ANPQQQPMAELWMGAHPKSSSRITTANGE 56
Query: 78 -LSLKEWISKNPD-VLGDRVLNKWGGDLPFLFKVLSVEKALSIQAHPDKE---------- 125
+SL++ I KN +LG+ V N++G +LPFLFKVL + LSIQ HP+K
Sbjct: 57 TVSLRDAIEKNKTAMLGEAVANRFG-ELPFLFKVLCAAQPLSIQVHPNKRNSEIGFAKEN 115
Query: 126 LARTLHKSQPSLYSDENHKPEMALALTEFEALCGFISLKELRNVLCTVPEIVDLVGGADA 185
A + Y D NHKPE+ ALT F A+ F +E +++ ++ V GA +
Sbjct: 116 AAGIPMDAAERNYKDPNHKPELVFALTPFLAMNAF---REFSDIVS----LLQPVAGAHS 168
Query: 186 EQCFPVNEFGRSQEVKAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKKRQLTDKEML 245
+ F + + + + +F+ +L +E ++ LK LN ++ + T
Sbjct: 169 A----IAHFLQVPNAERLSQ-LFASLLNMQGEEKSRALAVLKAALNSQQGEPWQT----- 218
Query: 246 VLRLEGQYPDDAGVLAAFLLNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAG 305
+ + YPDD+G+ + LLN VKLN GEA+ + A PHAY++G +E MA SDNV+RAG
Sbjct: 219 IRVISEYYPDDSGLFSPLLLNVVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLRAG 278
Query: 306 LTSKHRDIQTLFS 318
LT K+ DI L +
Sbjct: 279 LTPKYIDIPELVA 291
>pdb|2WFP|A Chain A, Crystal Structure Of Mannose 6-Phosphate Isomerase (Apo
Form) From Salmonella Typhimurium
Length = 394
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 166/313 (53%), Gaps = 41/313 (13%)
Query: 21 RLQCAVKNYNWGIVGSKSHVSRLFCLNSGTHINPNE-PYAEFWIGTHESGASFLDHGG-- 77
+L +V+NY WG SK+ ++ L+ + NP + P AE W+G H +S +
Sbjct: 6 KLINSVQNYAWG---SKTALTELYGI-----ANPQQQPMAELWMGAHPKSSSRITTANGE 57
Query: 78 -LSLKEWISKNPD-VLGDRVLNKWGGDLPFLFKVLSVEKALSIQAHPDKE---------- 125
+SL++ I KN +LG+ V N++G +LPFLFKVL + LSIQ HP+K
Sbjct: 58 TVSLRDAIEKNKTAMLGEAVANRFG-ELPFLFKVLCAAQPLSIQVHPNKRNSEIGFAKEN 116
Query: 126 LARTLHKSQPSLYSDENHKPEMALALTEFEALCGFISLKELRNVLCTVPEIVDLVGGADA 185
A + Y D NHKPE+ ALT F A+ F +E +++ ++ V GA +
Sbjct: 117 AAGIPMDAAERNYKDPNHKPELVFALTPFLAMNAF---REFSDIVS----LLQPVAGAHS 169
Query: 186 EQCFPVNEFGRSQEVKAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKKRQLTDKEML 245
+ F + + + + +F+ +L +E ++ LK LN ++ + T
Sbjct: 170 A----IAHFLQVPNAERLSQ-LFASLLNMQGEEKSRALAVLKAALNSQQGEPWQT----- 219
Query: 246 VLRLEGQYPDDAGVLAAFLLNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAG 305
+ + YPDD+G+ + LLN VKLN GEA+ + A PHAY++G +E MA SDNV+RAG
Sbjct: 220 IRVISEYYPDDSGLFSPLLLNVVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLRAG 279
Query: 306 LTSKHRDIQTLFS 318
LT K+ DI L +
Sbjct: 280 LTPKYIDIPELVA 292
>pdb|1QWR|A Chain A, Crystal Structure Analysis Of The Mannose 6-Phosphate
Isomerase From Bacillus Subtilis
pdb|1QWR|B Chain B, Crystal Structure Analysis Of The Mannose 6-Phosphate
Isomerase From Bacillus Subtilis
Length = 319
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 54 PNEPYAEFW-IGTHESGASFLDHG---GLSLKEWISKNPDVLGDRVLNKWGGDLPFLFKV 109
P+E E W I H G S + +G G +L E ++ +V G G P L K+
Sbjct: 34 PSESTGECWAISAHPKGPSTVANGPYKGKTLIELWEEHREVFGGVE----GDRFPLLTKL 89
Query: 110 LSVEKALSIQAHPDKELA 127
L V++ SI+ HPD A
Sbjct: 90 LDVKEDTSIKVHPDDYYA 107
>pdb|1W4T|A Chain A, X-Ray Crystallographic Structure Of Pseudomonas Aeruginosa
Arylamine N-Acetyltransferase
Length = 299
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 24/115 (20%)
Query: 179 LVGGADAEQCFPVNEFGRSQEVKAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKKRQ 238
+V G+ CF +N S+F+++LL+ E+ +++R++W L
Sbjct: 84 VVEGSRGGYCFELN-------------SLFARLLLALGYELELLVARVRWGL---PDDAP 127
Query: 239 LTDKEMLVLRL---EGQYPDDAGVLA-----AFLLNYVKLNRGEALCIGANEPHA 285
LT + L+LRL EG++ D G + A L + + G+ C+ +PHA
Sbjct: 128 LTQQSHLMLRLYLAEGEFLVDVGFGSANPPRALPLPGDEADAGQVHCVRLVDPHA 182
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 358 QAASLVFPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQSKELHL 417
+A + ++ G + GN + +A F KE V EG+ E ++ K++H+
Sbjct: 314 KATVDIIENLGGEKIVHLRRGNISFTAKFPKESKVREGD--------EVSVVFDXKKIHI 365
Query: 418 YRAGVNSSFF 427
+R + F
Sbjct: 366 FRKDTEKAIF 375
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 4 NNNTEIKKRK-RMINKPLRLQCAVKNYNWGIVGSKSHVSRLFCLNSGTHINPNEPYAEF 61
N T+++ R ++ P+R + NW IVGS R+F N+G + E + ++
Sbjct: 41 NYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY 99
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 4 NNNTEIKKRK-RMINKPLRLQCAVKNYNWGIVGSKSHVSRLFCLNSGTHINPNEPYAEF 61
N T+++ R ++ P+R + NW IVGS R+F N+G + E + ++
Sbjct: 41 NYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,845,265
Number of Sequences: 62578
Number of extensions: 534330
Number of successful extensions: 1184
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1166
Number of HSP's gapped (non-prelim): 22
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)