Query 014147
Match_columns 430
No_of_seqs 170 out of 1339
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 02:17:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014147.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014147hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2757 Mannose-6-phosphate is 100.0 4E-112 9E-117 823.0 31.9 406 19-426 1-410 (411)
2 PLN02288 mannose-6-phosphate i 100.0 2E-102 4E-107 790.5 38.1 388 19-407 1-393 (394)
3 PRK15131 mannose-6-phosphate i 100.0 1E-95 2E-100 743.5 38.5 372 19-421 1-388 (389)
4 PF01238 PMI_typeI: Phosphoman 100.0 2.5E-86 5.5E-91 674.1 20.9 362 19-386 1-372 (373)
5 COG1482 ManA Phosphomannose is 100.0 1.6E-68 3.4E-73 521.8 26.2 297 18-418 2-309 (312)
6 TIGR00218 manA mannose-6-phosp 100.0 3.8E-64 8.3E-69 499.2 27.8 292 19-420 1-301 (302)
7 PRK11171 hypothetical protein; 98.1 0.0001 2.2E-09 72.3 15.4 143 268-422 103-257 (266)
8 TIGR03214 ura-cupin putative a 97.7 0.00037 8E-09 68.2 12.3 69 347-416 177-247 (260)
9 TIGR03404 bicupin_oxalic bicup 97.7 0.00085 1.9E-08 68.8 15.3 83 346-429 242-330 (367)
10 PF07883 Cupin_2: Cupin domain 97.6 0.0008 1.7E-08 51.5 10.1 66 353-419 2-69 (71)
11 PRK13290 ectC L-ectoine syntha 97.5 0.0021 4.6E-08 56.0 12.0 80 343-424 29-110 (125)
12 COG0662 {ManC} Mannose-6-phosp 97.4 0.0014 3E-08 57.1 10.5 78 346-424 33-112 (127)
13 PF01050 MannoseP_isomer: Mann 97.2 0.005 1.1E-07 55.4 11.9 112 310-423 23-138 (151)
14 PF11699 CENP-C_C: Mif2/CENP-C 96.9 0.019 4.2E-07 46.6 10.9 72 347-419 10-83 (85)
15 COG1917 Uncharacterized conser 96.7 0.015 3.3E-07 50.4 9.9 60 345-405 39-99 (131)
16 PF01050 MannoseP_isomer: Mann 96.5 0.0069 1.5E-07 54.5 6.8 30 269-298 105-139 (151)
17 TIGR02272 gentisate_1_2 gentis 96.4 0.017 3.6E-07 58.5 9.4 60 357-418 258-317 (335)
18 PRK15460 cpsB mannose-1-phosph 96.2 0.15 3.3E-06 54.2 15.6 110 311-423 346-460 (478)
19 PF05899 Cupin_3: Protein of u 96.1 0.087 1.9E-06 41.4 10.3 62 346-409 4-65 (74)
20 PF06249 EutQ: Ethanolamine ut 96.1 0.02 4.3E-07 51.4 7.1 55 367-423 93-147 (152)
21 TIGR03214 ura-cupin putative a 96.1 0.047 1E-06 53.5 10.3 71 347-418 56-129 (260)
22 COG4297 Uncharacterized protei 95.9 0.018 3.9E-07 50.3 5.9 57 368-425 63-122 (163)
23 smart00835 Cupin_1 Cupin. This 95.9 0.086 1.9E-06 46.7 10.5 73 347-419 28-107 (146)
24 PF02311 AraC_binding: AraC-li 95.9 0.051 1.1E-06 45.8 8.7 62 366-428 20-82 (136)
25 TIGR01479 GMP_PMI mannose-1-ph 95.9 0.22 4.8E-06 52.9 15.0 78 346-424 373-452 (468)
26 PRK11171 hypothetical protein; 95.8 0.077 1.7E-06 52.1 10.5 74 346-420 58-134 (266)
27 PRK09943 DNA-binding transcrip 95.5 0.13 2.8E-06 47.4 10.3 74 349-423 107-182 (185)
28 PF00190 Cupin_1: Cupin; Inte 95.3 0.25 5.5E-06 43.6 11.1 75 347-421 32-118 (144)
29 COG4101 Predicted mannose-6-ph 94.3 0.052 1.1E-06 46.4 3.8 36 264-299 86-124 (142)
30 PF02041 Auxin_BP: Auxin bindi 94.3 0.46 9.9E-06 42.4 9.7 80 346-425 41-130 (167)
31 PF06339 Ectoine_synth: Ectoin 94.0 0.87 1.9E-05 39.5 10.7 78 346-424 32-110 (126)
32 PF04962 KduI: KduI/IolB famil 93.8 0.3 6.4E-06 47.9 8.7 73 352-425 30-110 (261)
33 COG0662 {ManC} Mannose-6-phosp 93.5 0.1 2.2E-06 45.3 4.3 31 268-298 77-112 (127)
34 COG3718 IolB Uncharacterized e 93.1 0.58 1.3E-05 44.7 8.9 74 348-424 30-112 (270)
35 COG4766 EutQ Ethanolamine util 92.9 0.37 7.9E-06 43.1 6.8 39 371-410 120-158 (176)
36 PRK15457 ethanolamine utilizat 92.6 0.48 1E-05 45.3 7.7 55 367-423 173-227 (233)
37 TIGR03404 bicupin_oxalic bicup 92.3 1 2.2E-05 46.5 10.3 74 347-421 65-143 (367)
38 PF07883 Cupin_2: Cupin domain 92.0 0.11 2.3E-06 39.5 2.1 21 267-287 38-58 (71)
39 COG3435 Gentisate 1,2-dioxygen 91.6 1.6 3.4E-05 43.4 10.0 55 368-424 280-334 (351)
40 PLN00212 glutelin; Provisional 91.6 1.3 2.8E-05 47.3 10.3 73 339-411 65-171 (493)
41 COG2140 Thermophilic glucose-6 91.5 0.75 1.6E-05 43.4 7.5 59 366-424 100-163 (209)
42 PF12852 Cupin_6: Cupin 90.9 1.2 2.7E-05 40.7 8.4 52 359-410 25-77 (186)
43 PRK04190 glucose-6-phosphate i 90.7 3.2 6.8E-05 38.9 10.9 52 368-419 96-152 (191)
44 COG3257 GlxB Uncharacterized p 90.4 1.3 2.7E-05 42.1 7.8 63 348-411 60-124 (264)
45 PRK13264 3-hydroxyanthranilate 89.9 2.4 5.1E-05 39.1 9.1 65 338-405 26-93 (177)
46 COG3450 Predicted enzyme of th 89.7 6 0.00013 34.0 10.9 62 342-405 38-99 (116)
47 TIGR03037 anthran_nbaC 3-hydro 89.2 2.7 5.9E-05 38.1 8.8 64 339-405 21-87 (159)
48 PRK13501 transcriptional activ 88.9 1.7 3.7E-05 42.7 8.1 44 366-410 35-78 (290)
49 COG1917 Uncharacterized conser 88.7 0.32 6.9E-06 42.1 2.5 23 267-289 83-105 (131)
50 PF12973 Cupin_7: ChrR Cupin-l 88.2 3.3 7.2E-05 33.5 8.1 67 348-420 23-89 (91)
51 PRK00924 5-keto-4-deoxyuronate 88.2 1.8 3.9E-05 42.7 7.6 55 370-425 75-132 (276)
52 PRK10579 hypothetical protein; 87.3 4.5 9.8E-05 33.4 8.1 50 359-410 33-83 (94)
53 PF02373 JmjC: JmjC domain, hy 87.3 0.74 1.6E-05 38.3 3.8 29 264-292 79-108 (114)
54 PF14525 AraC_binding_2: AraC- 87.1 7 0.00015 34.3 10.3 64 346-410 31-95 (172)
55 PF06865 DUF1255: Protein of u 87.1 4.6 0.0001 33.4 8.1 51 358-410 32-83 (94)
56 COG3837 Uncharacterized conser 86.7 4.6 9.9E-05 36.5 8.5 65 346-411 39-107 (161)
57 PF02311 AraC_binding: AraC-li 86.7 0.52 1.1E-05 39.6 2.5 24 266-289 41-64 (136)
58 PRK13502 transcriptional activ 86.3 2.5 5.4E-05 41.1 7.5 43 367-410 36-78 (282)
59 PRK13290 ectC L-ectoine syntha 86.0 0.62 1.4E-05 40.5 2.7 23 267-289 76-98 (125)
60 PLN00212 glutelin; Provisional 85.9 5.6 0.00012 42.5 10.3 78 348-425 347-430 (493)
61 TIGR02272 gentisate_1_2 gentis 85.3 1.5 3.3E-05 44.6 5.4 68 357-425 89-157 (335)
62 PF05726 Pirin_C: Pirin C-term 85.2 6 0.00013 32.9 8.2 64 353-419 3-67 (104)
63 TIGR01479 GMP_PMI mannose-1-ph 85.1 1.3 2.8E-05 47.0 5.1 39 266-304 415-462 (468)
64 PRK13500 transcriptional activ 85.0 2.6 5.6E-05 42.1 7.0 43 367-410 66-108 (312)
65 PRK13503 transcriptional activ 85.0 2.2 4.9E-05 41.2 6.4 42 366-408 32-73 (278)
66 PRK15460 cpsB mannose-1-phosph 85.0 1.2 2.7E-05 47.4 4.9 39 267-305 425-472 (478)
67 PF11142 DUF2917: Protein of u 84.3 7.7 0.00017 29.5 7.7 55 355-410 3-58 (63)
68 TIGR03037 anthran_nbaC 3-hydro 83.5 0.82 1.8E-05 41.4 2.4 22 267-288 71-92 (159)
69 PF00190 Cupin_1: Cupin; Inte 83.3 0.94 2E-05 39.9 2.7 21 269-289 87-107 (144)
70 PF06560 GPI: Glucose-6-phosph 82.9 6.6 0.00014 36.5 8.1 59 367-426 81-148 (182)
71 PF08007 Cupin_4: Cupin superf 82.7 0.76 1.6E-05 46.3 2.1 24 266-289 176-199 (319)
72 PRK10296 DNA-binding transcrip 82.5 3 6.4E-05 40.6 6.1 38 367-405 41-78 (278)
73 PRK13264 3-hydroxyanthranilate 81.7 0.98 2.1E-05 41.6 2.2 22 267-288 77-98 (177)
74 PRK09943 DNA-binding transcrip 80.7 1.3 2.9E-05 40.7 2.8 23 266-288 146-168 (185)
75 COG4101 Predicted mannose-6-ph 80.6 11 0.00024 32.5 7.9 77 347-423 44-124 (142)
76 PHA02984 hypothetical protein; 80.5 7.1 0.00015 38.2 7.6 59 369-427 93-156 (286)
77 PF04209 HgmA: homogentisate 1 79.9 12 0.00027 39.2 9.7 71 348-420 124-195 (424)
78 PF13621 Cupin_8: Cupin-like d 79.1 1.3 2.7E-05 42.0 2.1 25 264-288 207-231 (251)
79 COG3257 GlxB Uncharacterized p 79.0 22 0.00047 34.0 10.1 58 347-405 180-238 (264)
80 PHA02890 hypothetical protein; 78.9 8.1 0.00018 37.5 7.4 58 369-426 92-152 (278)
81 PRK10572 DNA-binding transcrip 77.3 6 0.00013 38.6 6.4 39 368-407 48-86 (290)
82 TIGR02451 anti_sig_ChrR anti-s 77.0 7.5 0.00016 36.9 6.7 58 348-410 126-183 (215)
83 PRK09685 DNA-binding transcrip 76.8 8.3 0.00018 37.8 7.3 42 368-410 70-111 (302)
84 PRK05341 homogentisate 1,2-dio 75.8 18 0.00038 38.1 9.4 56 364-420 149-204 (438)
85 PF06052 3-HAO: 3-hydroxyanthr 75.6 1.8 4E-05 38.7 2.0 22 266-287 75-96 (151)
86 PF03079 ARD: ARD/ARD' family; 75.2 2 4.3E-05 39.0 2.1 24 266-289 115-138 (157)
87 TIGR02297 HpaA 4-hydroxyphenyl 75.1 4.6 0.0001 39.2 4.9 42 367-409 41-83 (287)
88 PRK15457 ethanolamine utilizat 73.1 3 6.6E-05 40.0 2.9 23 265-287 192-214 (233)
89 COG3123 Uncharacterized protei 72.9 15 0.00033 29.7 6.3 48 362-410 35-83 (94)
90 PF03079 ARD: ARD/ARD' family; 72.0 19 0.00042 32.5 7.7 57 369-425 92-153 (157)
91 smart00835 Cupin_1 Cupin. This 71.9 3.2 7E-05 36.5 2.7 22 267-288 76-97 (146)
92 PLN02658 homogentisate 1,2-dio 70.8 27 0.00059 36.6 9.4 56 364-420 142-197 (435)
93 PRK04190 glucose-6-phosphate i 70.4 3.7 7.9E-05 38.4 2.8 21 267-287 121-141 (191)
94 PF07385 DUF1498: Protein of u 69.7 4.9 0.00011 38.3 3.4 35 265-299 153-191 (225)
95 TIGR01015 hmgA homogentisate 1 68.7 31 0.00068 36.2 9.3 55 364-420 143-197 (429)
96 PF06719 AraC_N: AraC-type tra 65.4 27 0.00059 31.1 7.3 60 345-408 2-61 (155)
97 PRK10371 DNA-binding transcrip 64.6 12 0.00025 37.3 5.3 41 367-408 44-84 (302)
98 COG3822 ABC-type sugar transpo 64.4 8 0.00017 36.0 3.6 34 266-299 153-190 (225)
99 COG3508 HmgA Homogentisate 1,2 64.0 43 0.00093 34.3 8.9 55 365-420 142-196 (427)
100 KOG2107 Uncharacterized conser 63.9 5 0.00011 36.5 2.2 21 266-286 116-136 (179)
101 PF14499 DUF4437: Domain of un 62.6 30 0.00065 33.8 7.4 71 349-421 171-244 (251)
102 PRK10572 DNA-binding transcrip 60.8 6.9 0.00015 38.2 2.8 22 267-288 68-89 (290)
103 PF05899 Cupin_3: Protein of u 60.4 5.7 0.00012 31.0 1.7 17 267-283 45-61 (74)
104 PF12852 Cupin_6: Cupin 60.4 7.8 0.00017 35.4 2.9 26 266-291 55-80 (186)
105 COG4297 Uncharacterized protei 60.2 6.3 0.00014 34.8 2.1 51 267-324 86-145 (163)
106 PF05962 HutD: HutD; InterPro 60.1 30 0.00065 32.0 6.7 43 367-410 133-175 (184)
107 PRK13502 transcriptional activ 57.9 7.7 0.00017 37.7 2.6 23 266-288 56-78 (282)
108 PRK13501 transcriptional activ 57.9 6.8 0.00015 38.4 2.2 23 266-288 56-78 (290)
109 KOG2107 Uncharacterized conser 56.5 7.2 0.00016 35.5 1.8 57 370-426 94-155 (179)
110 PRK13500 transcriptional activ 56.3 7.7 0.00017 38.7 2.3 22 267-288 87-108 (312)
111 COG3717 KduI 5-keto 4-deoxyuro 56.2 35 0.00077 32.9 6.4 51 372-423 79-132 (278)
112 COG1741 Pirin-related protein 55.3 1.7E+02 0.0036 29.1 11.4 116 264-385 82-209 (276)
113 COG1791 Uncharacterized conser 54.8 55 0.0012 30.1 7.2 59 369-428 95-159 (181)
114 COG2850 Uncharacterized conser 52.9 7 0.00015 40.0 1.3 29 267-298 180-209 (383)
115 KOG1356 Putative transcription 52.9 6.8 0.00015 44.0 1.3 36 243-286 784-819 (889)
116 PRK10296 DNA-binding transcrip 50.3 12 0.00026 36.3 2.5 21 266-286 61-81 (278)
117 COG3450 Predicted enzyme of th 50.3 13 0.00027 32.0 2.3 18 266-283 82-99 (116)
118 PF06560 GPI: Glucose-6-phosph 49.7 12 0.00026 34.8 2.2 22 266-287 110-131 (182)
119 TIGR02297 HpaA 4-hydroxyphenyl 49.4 11 0.00025 36.5 2.2 22 266-287 62-83 (287)
120 PRK13503 transcriptional activ 49.2 8.8 0.00019 37.0 1.4 21 268-288 55-75 (278)
121 PF06052 3-HAO: 3-hydroxyanthr 47.1 1.6E+02 0.0034 26.6 8.7 58 347-405 32-92 (151)
122 PRK08158 type III secretion sy 44.7 54 0.0012 33.0 6.1 31 269-299 168-199 (303)
123 PF06249 EutQ: Ethanolamine ut 44.6 14 0.00031 33.2 1.9 21 266-286 113-133 (152)
124 PF05523 FdtA: WxcM-like, C-te 41.8 1.3E+02 0.0027 26.2 7.4 47 368-414 53-103 (131)
125 KOG2757 Mannose-6-phosphate is 41.4 28 0.00061 35.7 3.5 36 266-309 372-409 (411)
126 PRK10371 DNA-binding transcrip 41.2 19 0.00042 35.7 2.4 22 267-288 65-86 (302)
127 PRK01712 carbon storage regula 38.2 58 0.0013 25.0 4.0 46 267-320 3-51 (64)
128 PF12973 Cupin_7: ChrR Cupin-l 36.1 33 0.00071 27.6 2.6 25 269-293 61-86 (91)
129 PF05941 Chordopox_A20R: Chord 35.6 31 0.00068 34.9 2.8 30 266-295 67-98 (334)
130 KOG3995 3-hydroxyanthranilate 33.8 1.2E+02 0.0027 28.8 6.2 58 368-425 52-125 (279)
131 COG2140 Thermophilic glucose-6 33.0 36 0.00078 32.3 2.7 22 266-287 126-147 (209)
132 PRK00364 groES co-chaperonin G 31.1 1.4E+02 0.0031 24.5 5.6 50 370-419 35-86 (95)
133 PRK15186 AraC family transcrip 29.7 1.8E+02 0.0038 29.0 7.1 45 367-411 36-80 (291)
134 KOG3706 Uncharacterized conser 28.8 31 0.00067 36.6 1.6 20 267-286 382-401 (629)
135 PF03172 Sp100: Sp100 domain; 28.6 38 0.00081 28.5 1.8 22 143-164 13-35 (103)
136 TIGR00202 csrA carbon storage 28.6 91 0.002 24.3 3.7 45 268-320 4-51 (69)
137 cd00320 cpn10 Chaperonin 10 Kd 28.3 1.9E+02 0.0042 23.6 5.9 51 369-419 33-85 (93)
138 PF02599 CsrA: Global regulato 28.1 60 0.0013 24.0 2.6 44 267-318 3-49 (54)
139 PF07385 DUF1498: Protein of u 26.9 2.2E+02 0.0047 27.4 6.7 42 369-411 136-177 (225)
140 PF00166 Cpn10: Chaperonin 10 26.1 1.5E+02 0.0033 24.0 5.0 50 369-418 33-84 (93)
141 PF08496 Peptidase_S49_N: Pept 25.7 41 0.00088 30.4 1.6 20 269-288 127-150 (155)
142 PF00027 cNMP_binding: Cyclic 25.4 1.8E+02 0.0039 21.9 5.2 45 355-399 3-52 (91)
143 TIGR00218 manA mannose-6-phosp 25.1 66 0.0014 32.0 3.2 24 267-290 272-295 (302)
144 COG3138 AstA Arginine/ornithin 25.0 23 0.00049 35.2 -0.2 43 99-141 206-252 (336)
145 PF09313 DUF1971: Domain of un 25.0 3.6E+02 0.0079 21.6 7.5 51 368-418 24-80 (82)
146 COG1791 Uncharacterized conser 24.3 56 0.0012 30.1 2.2 31 264-301 116-146 (181)
147 PLN02288 mannose-6-phosphate i 24.3 65 0.0014 33.6 3.0 22 389-410 252-274 (394)
148 PF00908 dTDP_sugar_isom: dTDP 23.5 84 0.0018 28.9 3.3 36 267-302 97-135 (176)
149 COG0355 AtpC F0F1-type ATP syn 22.6 1.7E+02 0.0038 25.7 5.0 64 255-319 30-98 (135)
150 KOG1633 F-box protein JEMMA an 22.4 54 0.0012 37.2 2.1 25 264-288 194-218 (776)
151 KOG0721 Molecular chaperone (D 22.0 22 0.00048 33.9 -0.8 13 113-125 120-132 (230)
152 KOG1417 Homogentisate 1,2-diox 21.8 5.4E+02 0.012 25.9 8.5 44 366-410 152-195 (446)
153 PF04074 DUF386: Domain of unk 21.5 87 0.0019 27.8 2.9 33 255-287 101-134 (153)
154 KOG0281 Beta-TrCP (transducin 21.4 46 0.001 34.0 1.2 54 268-325 345-411 (499)
155 PRK14898 DNA-directed RNA poly 21.1 5.3E+02 0.012 29.8 9.7 49 350-404 151-199 (858)
156 PRK00794 flbT flagellar biosyn 20.7 1.4E+02 0.0029 26.4 3.8 37 267-305 5-41 (132)
157 PF14499 DUF4437: Domain of un 20.6 2.5E+02 0.0055 27.4 6.0 62 346-410 33-96 (251)
No 1
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-112 Score=822.96 Aligned_cols=406 Identities=47% Similarity=0.802 Sum_probs=374.9
Q ss_pred CEEeecccccccCCCCCCcchHhhhh-hcCCCCCCCCCCCceEEEEeecCCCceeecCCCcchHHHHhhCCCccCchhhh
Q 014147 19 PLRLQCAVKNYNWGIVGSKSHVSRLF-CLNSGTHINPNEPYAEFWIGTHESGASFLDHGGLSLKEWISKNPDVLGDRVLN 97 (430)
Q Consensus 19 ~~rL~p~~~~y~WGg~~~~s~l~~l~-~~~~~~~~~~~~~~aE~W~g~Hp~~pS~v~~g~~~L~~~i~~~p~~LG~~~~~ 97 (430)
++||+|.+|+|.||+.|..|+++||+ .++++++|+.++||||+||||||+|||.+...+.+|+++|++||+.+|.++.+
T Consensus 1 l~rL~c~Vk~Y~WGk~G~~S~varlaaa~d~~~~id~~~PYAElWMGTH~~Gps~v~~~~~tL~~~l~~nP~~lg~~v~~ 80 (411)
T KOG2757|consen 1 LFRLKCHVKQYAWGKKGSESLVARLAAAGDPSFQIDQDKPYAELWMGTHPSGPSHVKETGETLSQWLAKNPELLGNKVAD 80 (411)
T ss_pred CceeeeeeeeccccccCcHHHHHHHHHcCCCccccCCCCchHHhhcccCCCccHhhhhccccHHHHHhhChhhhcchhHh
Confidence 57899999999999999999999999 56689999999999999999999999997555459999999999999999999
Q ss_pred hcCCCCCceeeeeccCCCCceeccCChHHHHhhcccCCCCCCCCCCCceeEEeccchhhhcCCCchHHHHHhhcCCchHH
Q 014147 98 KWGGDLPFLFKVLSVEKALSIQAHPDKELARTLHKSQPSLYSDENHKPEMALALTEFEALCGFISLKELRNVLCTVPEIV 177 (430)
Q Consensus 98 ~fg~~lP~L~KvLda~~~LSIQvHPd~~~A~~~~~~~p~~Y~D~n~KpE~~~aL~~~~~~~GFr~~~ei~~~l~~~p~l~ 177 (430)
+||.+|||||||||++++||||+||||++|+++|.++|.+|+|+||||||+||||+|+++|||||.+||.++|+++|||+
T Consensus 81 k~~~~LpFLFKVLSI~k~LSIQaHP~K~lak~LH~~dP~~YpDdNHKPEmAiAlT~Fe~LcGFrp~~eI~~~l~~~pe~~ 160 (411)
T KOG2757|consen 81 KFGCDLPFLFKVLSINKPLSIQAHPNKELAKKLHKTDPKHYPDDNHKPEMAIALTPFEALCGFRPLEEIKQFLDTIPELR 160 (411)
T ss_pred hcCCCCceeeeEeeecceeeeeecCCHHHHHHHhhhCcccCCCCCCCchheeecchHhhhhCccCHHHHHHHHHhChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCccccccCcccccCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHhcCCCCc
Q 014147 178 DLVGGADAEQCFPVNEFGRSQEVKAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKKRQLTDKEMLVLRLEGQYPDDA 257 (430)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~yP~D~ 257 (430)
+++|.+++.|+.+..+- .++..+..|+.+|+.+|..+.+++++++.+|++++..+.+.....+..++|++|++|||||+
T Consensus 161 ~LvGeEa~~q~~~~~~~-e~e~~~~~l~~~Fs~lM~~~~~~i~~~v~~L~~r~~~~~~~~~~~d~~eli~~l~kqfP~DI 239 (411)
T KOG2757|consen 161 ELVGEEAARQLKDLTSH-EDEDSKKVLKLCFSRLMKAEENVIKIQVSKLVKRLQNELNGFNLTDLEELILKLNKQFPGDI 239 (411)
T ss_pred HHhhHHHHHHHHhhccc-hhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhccccccCcccHHHHHHHHHhhCCCcc
Confidence 99999988887554431 12457889999999999999999999999999999886554344568899999999999999
Q ss_pred eehhhhhcceEEccCCCEEEecCCCceeeccCcEEEEeecCCcEEEcCCCCCccCHHHHHhccccCCCC--ccccccccc
Q 014147 258 GVLAAFLLNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAGLTSKHRDIQTLFSMLNRRQGF--PQILKGISL 335 (430)
Q Consensus 258 G~~~~~~Ln~v~l~pGd~i~ipaG~~HAy~~G~~~Eima~SDnv~R~gltpk~~die~ll~~l~~~~~~--~~~~~~~~~ 335 (430)
|+|+++|||++.|+|||++|+.|+.||||++|+|+||||+||||||+|+|||++|+++|++||+|+... |..+.....
T Consensus 240 Gvfs~~FlN~~~L~PGEA~yL~AnepHAYlsGdcvECMA~SDNvIRAGlTPK~~Dv~tL~smL~Y~~~~~~p~~~~~~~~ 319 (411)
T KOG2757|consen 240 GVFSPFFLNYVRLNPGEAIYLEANEPHAYLSGDCVECMACSDNVIRAGLTPKYIDVDTLCSMLTYKLTEQQPKLFPRSRL 319 (411)
T ss_pred eeeeHhhhhheecCCCceeeecCCCcceeecCceeEEecccCceeeccCCCccccHHHHHhHhcccccccccccCCccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999874 333333345
Q ss_pred CCceEEeCCCCCceEEEEEEecCCCeEEecCCCCeEEEEEEcCcEEEEeC-CcceEEeccccEEEEeCCCeEEEEecCcc
Q 014147 336 NPYTTRYLPPFEEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAG-FSKEQIVEEGEVLFVPAYMEFTIASQSKE 414 (430)
Q Consensus 336 ~~~~~~y~~~~~~F~v~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~~~-~~~~~~l~~Ge~~fIpa~~~~~i~~~~~~ 414 (430)
++++.+|.||+++|+|.+++++.|+++.++..+++||++|++|+++++.+ +. .+.+.+|+++||||+..+++++++..
T Consensus 320 ~~~~~~Y~Ppi~eF~v~~~~v~~g~~~~~~~~~~~SIllv~~G~g~l~~~t~~-~~~v~rG~V~fI~a~~~i~~~~~sd~ 398 (411)
T KOG2757|consen 320 DGYVLLYDPPIEEFAVLETKVPTGESYKFPGVDGPSILLVLKGSGILKTDTDS-KILVNRGDVLFIPANHPIHLSSSSDP 398 (411)
T ss_pred CCceeEeCCCCcceeEEEeecCCCceEEeecCCCceEEEEEecceEEecCCCC-ceeeccCcEEEEcCCCCceeeccCcc
Confidence 68899999999999999999999999999999999999999999999987 45 89999999999999999999997667
Q ss_pred EEEEEEecCCCC
Q 014147 415 LHLYRAGVNSSF 426 (430)
Q Consensus 415 ~~~~~a~~~~~~ 426 (430)
+.+|||++++++
T Consensus 399 ~~~yrAf~~~r~ 410 (411)
T KOG2757|consen 399 FLGYRAFSNSRF 410 (411)
T ss_pred eeeeeccccccC
Confidence 999999999864
No 2
>PLN02288 mannose-6-phosphate isomerase
Probab=100.00 E-value=1.8e-102 Score=790.51 Aligned_cols=388 Identities=62% Similarity=1.071 Sum_probs=342.9
Q ss_pred CEEeecccccccCCCCCCcchHhhhhhcCCCCCCCCCCCceEEEEeecCCCceeecCC---CcchHHHHhhCCCccCchh
Q 014147 19 PLRLQCAVKNYNWGIVGSKSHVSRLFCLNSGTHINPNEPYAEFWIGTHESGASFLDHG---GLSLKEWISKNPDVLGDRV 95 (430)
Q Consensus 19 ~~rL~p~~~~y~WGg~~~~s~l~~l~~~~~~~~~~~~~~~aE~W~g~Hp~~pS~v~~g---~~~L~~~i~~~p~~LG~~~ 95 (430)
|++|+|.+|+|+||+++.+|+|++|.+...+.++++++||||+|||+||++||++.++ +.+|.++|+++|++||...
T Consensus 1 m~~L~~~vq~YaWG~~~~~s~ia~l~~~~~~~~~~~~~p~aElW~g~hp~~pS~v~~~~~~~~~L~~~i~~~~~~lG~~~ 80 (394)
T PLN02288 1 MLRLRCAVQNYDWGRIGSESEVARLAAANSGSDVDPDKPYAELWMGTHPSGPSFVVATGKGSVLLKEWIAENPAALGDRV 80 (394)
T ss_pred CeeeeCCccccCCCCCChHHHHHHHhcccCCCcCCCCCcEEEEEeeECCCCCeEEeCCCCCCCcHHHHHHhChhhhCchh
Confidence 5899999999999999988999999842223467788999999999999999997543 4799999999999999999
Q ss_pred hhhcCCCCCceeeeeccCCCCceeccCChHHHHhhcccCCCCCCCCCCCceeEEeccchhhhcCCCchHHHHHhhcCCch
Q 014147 96 LNKWGGDLPFLFKVLSVEKALSIQAHPDKELARTLHKSQPSLYSDENHKPEMALALTEFEALCGFISLKELRNVLCTVPE 175 (430)
Q Consensus 96 ~~~fg~~lP~L~KvLda~~~LSIQvHPd~~~A~~~~~~~p~~Y~D~n~KpE~~~aL~~~~~~~GFr~~~ei~~~l~~~p~ 175 (430)
.++||++|||||||||++++|||||||||++|+++|+.+|+||+|+||||||+||||+|++||||||.+||+++|+.+|+
T Consensus 81 ~~~~~~~lP~L~KvL~a~~~LSIQvHPd~~~A~~~~~~~P~~Y~D~nHKPEm~iALt~F~al~GFRp~~ei~~~l~~~p~ 160 (394)
T PLN02288 81 VERWGGDLPFLFKVLSVAKALSIQAHPDKKLAEKLHAEQPNVYKDDNHKPEMALALTEFEALCGFVTIQELKAVLRTVPE 160 (394)
T ss_pred hhhccccCceEEEEeecCCCCceeeCCCHHHHHHhcccCccccCCCCCCceeEEEcChHHHhcCCCCHHHHHHHHHhChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCccccccCcccccCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHhcCCC
Q 014147 176 IVDLVGGADAEQCFPVNEFGRSQEVKAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKKRQLTDKEMLVLRLEGQYPD 255 (430)
Q Consensus 176 l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~yP~ 255 (430)
|+.+++.....++.+......+...++.||++|+.+|+++.+++++++++|.+++.............++++||+++||+
T Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~f~~lm~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~yP~ 240 (394)
T PLN02288 161 LRELVGSEAADQLLALPEHDGEEDVKSVLRSAFTALMTASKDVVTEAVSKLKARLHAESQARELTDKEELVLRLEKQYPG 240 (394)
T ss_pred HHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHCCC
Confidence 99999986554444332222223367899999999999999999999999999987542211233467899999999999
Q ss_pred CceehhhhhcceEEccCCCEEEecCCCceeeccCcEEEEeecCCcEEEcCCCCCccCHHHHHhccccCCCCccccccccc
Q 014147 256 DAGVLAAFLLNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAGLTSKHRDIQTLFSMLNRRQGFPQILKGISL 335 (430)
Q Consensus 256 D~G~~~~~~Ln~v~l~pGd~i~ipaG~~HAy~~G~~~Eima~SDnv~R~gltpk~~die~ll~~l~~~~~~~~~~~~~~~ 335 (430)
|+|+|++++||++.|+|||+||+|||+||||++|+|||||||||||||+||||||+|+++|++|++|++.+++.+.+.+.
T Consensus 241 D~G~~~~llLN~v~L~PGeaifl~ag~~HAYl~G~~vE~MA~SDNVlRaGLTpK~~Dv~~L~~~l~f~~~~~~~~~~~~~ 320 (394)
T PLN02288 241 DVGVLSAFFLNYVKLNPGEALYLGANEPHAYLSGECIECMATSDNVVRAGLTPKFRDVQTLCSMLTYKQGFPEILTGVPV 320 (394)
T ss_pred CCeeEhhhhhceEecCCCCEEEecCCCCceecCCCeEEeeecCCceeeecCCCccccHHHHHhhccCccCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988777666665
Q ss_pred CCceEEeCCCCCceEEEEEEecCCCeEEecCCCCeEEEEEEcCcEEEEeCCcce--EEeccccEEEEeCCCeEE
Q 014147 336 NPYTTRYLPPFEEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAGFSKE--QIVEEGEVLFVPAYMEFT 407 (430)
Q Consensus 336 ~~~~~~y~~~~~~F~v~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~~~~~~~--~~l~~Ge~~fIpa~~~~~ 407 (430)
..+...|.+|+++|.|.++++.+++...+...++++|++|++|+++|..+++ . ..+++|+++||||+..+.
T Consensus 321 ~~~~~~y~~P~~eF~v~~~~l~~~~~~~~~~~~gp~Illv~~G~~~i~~~~~-~~~~~l~~G~~~fv~a~~~~~ 393 (394)
T PLN02288 321 DPYTTRYLPPFDEFEVDHCDVPPGASVVFPAVPGPSVFLVIEGEGVLSTGSS-EDGTAAKRGDVFFVPAGTEIH 393 (394)
T ss_pred CCCceEECCCCcceEEEEEEeCCCCeEeecCCCCCEEEEEEcCEEEEecCCc-cceEEEeceeEEEEeCCCccc
Confidence 5566789999999999999998776666655789999999999999987665 4 679999999999987654
No 3
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=1e-95 Score=743.54 Aligned_cols=372 Identities=30% Similarity=0.478 Sum_probs=326.4
Q ss_pred CEEeecccccccCCCCCCcchHhhhhhcCCCCCCCCCCCceEEEEeecCCCceeecC--C-CcchHHHHhhCCC-ccCch
Q 014147 19 PLRLQCAVKNYNWGIVGSKSHVSRLFCLNSGTHINPNEPYAEFWIGTHESGASFLDH--G-GLSLKEWISKNPD-VLGDR 94 (430)
Q Consensus 19 ~~rL~p~~~~y~WGg~~~~s~l~~l~~~~~~~~~~~~~~~aE~W~g~Hp~~pS~v~~--g-~~~L~~~i~~~p~-~LG~~ 94 (430)
|++|+|.+|+|+|||+ |.|+++++ .+.++++||||+|||+||++||++.+ | +++|+++|+++|+ +||++
T Consensus 1 ~~~l~~~~q~y~WG~~---s~l~~l~g----~~~~~~~p~aE~W~gaHp~~pS~v~~~~~~~~~L~~~i~~~~~~~LG~~ 73 (389)
T PRK15131 1 MQKMINSVQNYAWGSK---TALTELYG----IANPDNQPMAELWMGAHPKSSSRVQDANGDIVSLRDVIESDKSALLGEA 73 (389)
T ss_pred CeeeeccccccCCCCH---HHHHHHhC----CCCCCCCceeEEEEEECCCCCeEEeCCCCCCCcHHHHHHhCHHHHcCcc
Confidence 5889999999999986 47999873 23446799999999999999999754 3 5789999999998 99999
Q ss_pred hhhhcCCCCCceeeeeccCCCCceeccCChHHHHhhcccCC----------CCCCCCCCCceeEEeccchhhhcCCCchH
Q 014147 95 VLNKWGGDLPFLFKVLSVEKALSIQAHPDKELARTLHKSQP----------SLYSDENHKPEMALALTEFEALCGFISLK 164 (430)
Q Consensus 95 ~~~~fg~~lP~L~KvLda~~~LSIQvHPd~~~A~~~~~~~p----------~~Y~D~n~KpE~~~aL~~~~~~~GFr~~~ 164 (430)
+.++|| +|||||||||++++|||||||||++|+++|++++ |||+|+||||||||||++|++||||||.+
T Consensus 74 ~~~~f~-~lP~L~KiL~a~~~LSIQvHPd~~~A~~~f~~e~~~gip~~~~~r~Y~D~nhKpEm~~aLt~F~al~GfRp~~ 152 (389)
T PRK15131 74 VAKRFG-ELPFLFKVLCAAQPLSIQVHPNKRAAEIGFAKENAAGIPLDAAERNYKDPNHKPELVFALTPFLAMNAFREFS 152 (389)
T ss_pred hhhhcC-CCceEeeeeccCCCceeEeCCCHHHHHHHhhhcccccCccccchhccCCCCCCceEEEEcchhHHhcCCCcHH
Confidence 999997 8999999999999999999999999999997754 99999999999999999999999999999
Q ss_pred HHHHhhcCCchHHHhhcCccccccCcccccCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhhcccccchHHH
Q 014147 165 ELRNVLCTVPEIVDLVGGADAEQCFPVNEFGRSQEVKAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKKRQLTDKEM 244 (430)
Q Consensus 165 ei~~~l~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 244 (430)
||+++|+.+|++..++..... ..+++.|+.+|..+|+++++++++++++++++++.... . ...
T Consensus 153 ei~~~l~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~--~---~~~ 215 (389)
T PRK15131 153 EIVSLLQPVAGAHPAIAHFLQ------------QPDAERLSELFASLLNMQGEEKSRALAVLKSALNSQQG--E---PWQ 215 (389)
T ss_pred HHHHHHHhcchhhHHHHHHhc------------CccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc--c---hHH
Confidence 999999999998887754321 13678899999999999999999999999999874311 1 356
Q ss_pred HHHHHHhcCCCCceehhhhhcceEEccCCCEEEecCCCceeeccCcEEEEeecCCcEEEcCCCCCccCHHHHHhccccCC
Q 014147 245 LVLRLEGQYPDDAGVLAAFLLNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAGLTSKHRDIQTLFSMLNRRQ 324 (430)
Q Consensus 245 ~~~~l~~~yP~D~G~~~~~~Ln~v~l~pGd~i~ipaG~~HAy~~G~~~Eima~SDnv~R~gltpk~~die~ll~~l~~~~ 324 (430)
++.||+++||+|+|+|++++||+++|+|||+||||||+||||++|+|+|||||||||||+|+|||++|++++++|++|+.
T Consensus 216 ~i~~l~~~~p~D~G~~~~llLN~v~l~pGeaifipAg~~HAyl~G~~iEima~SDnv~RaGlT~K~idv~~ll~~l~f~~ 295 (389)
T PRK15131 216 TIRLISEFYPDDSGLFSPLLLNVVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLRAGLTPKYIDIPELVANVKFEA 295 (389)
T ss_pred HHHHHHHHCCCCchheehhheeEEEeCCCCEEEeCCCCCeEEcCCeEEEEEecCCcEEecCCCCCcccHHHHHhhcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccc-CCceEEeCCCCCceEEEEEEecCCCeEEecCCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCC
Q 014147 325 GFPQILKGISL-NPYTTRYLPPFEEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAY 403 (430)
Q Consensus 325 ~~~~~~~~~~~-~~~~~~y~~~~~~F~v~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~ 403 (430)
.++..+...+. .+....|.+|+++|++.++++..+ .... ..++++|++|++|+++|..+++ +..|++|+++||||+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~p~~~F~~~~~~l~~~-~~~~-~~~~~~Illv~~G~~~i~~~~~-~~~l~~G~~~fipa~ 372 (389)
T PRK15131 296 KPANQLLTQPVKQGAELDFPIPVDDFAFSLHDLSDQ-PTTL-SQQSAAILFCVEGEAVLWKGEQ-QLTLKPGESAFIAAN 372 (389)
T ss_pred CCchhccccccccCCeEEECCCCCCcEEEEEEECCc-eEEe-cCCCcEEEEEEcceEEEEeCCe-EEEECCCCEEEEeCC
Confidence 87765444342 356778999999999999999643 3444 3478999999999999998766 899999999999998
Q ss_pred Ce-EEEEecCccEEEEEEe
Q 014147 404 ME-FTIASQSKELHLYRAG 421 (430)
Q Consensus 404 ~~-~~i~~~~~~~~~~~a~ 421 (430)
.+ +++.+ ...+++++
T Consensus 373 ~~~~~~~g---~~~~~~~~ 388 (389)
T PRK15131 373 ESPVTVSG---HGRLARVY 388 (389)
T ss_pred CccEEEec---ccEEEEEe
Confidence 87 88876 34566665
No 4
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=100.00 E-value=2.5e-86 Score=674.08 Aligned_cols=362 Identities=40% Similarity=0.705 Sum_probs=281.9
Q ss_pred CEEeecccccccCCCCCCcchHhhhhh-cCCCCCCCCCCCceEEEEeecCCCceeecCCCcchHHHHhhCCC-ccCchhh
Q 014147 19 PLRLQCAVKNYNWGIVGSKSHVSRLFC-LNSGTHINPNEPYAEFWIGTHESGASFLDHGGLSLKEWISKNPD-VLGDRVL 96 (430)
Q Consensus 19 ~~rL~p~~~~y~WGg~~~~s~l~~l~~-~~~~~~~~~~~~~aE~W~g~Hp~~pS~v~~g~~~L~~~i~~~p~-~LG~~~~ 96 (430)
|+||+|.+|+|+||+.|+.+.|+++++ ..++ +++++||||+|||+||++||.+.+|+ |.+.+..++. .+|+...
T Consensus 1 ~~~l~~~~~~y~WG~~Gs~~~l~~l~~~~~~~--~~~~~p~aE~W~g~hp~~ps~v~~~~--l~~~~~~~~~~~~~~~~~ 76 (373)
T PF01238_consen 1 MFKLKPAVQNYIWGKKGSNSRLARLLGKPDPS--IDEDKPYAELWMGAHPNGPSVVANGG--LQGKILSDPIAELGEKFG 76 (373)
T ss_dssp EEEEEEEEEE-TTBEECCCSHHHHHHHHH-TT----TTSCEEEEEES--TTS-EEEECTT--HHHHHHHHHHHHHHHHHH
T ss_pred CeeeecCcccCccCCCCcccHHHHHhcCCCCc--cccCCccCCEEEEECCCCceEeecCc--cccchhhhhHhhhhHHhh
Confidence 689999999999997777789999883 3442 55689999999999999999977664 5555554444 5666666
Q ss_pred hhcCCCCCceeeeeccCCCCceeccCChHHHHhhcccCCCCCCCCCCCceeEEeccchhhhcCCCchHHHHHhhcCCchH
Q 014147 97 NKWGGDLPFLFKVLSVEKALSIQAHPDKELARTLHKSQPSLYSDENHKPEMALALTEFEALCGFISLKELRNVLCTVPEI 176 (430)
Q Consensus 97 ~~fg~~lP~L~KvLda~~~LSIQvHPd~~~A~~~~~~~p~~Y~D~n~KpE~~~aL~~~~~~~GFr~~~ei~~~l~~~p~l 176 (430)
.+||++|||||||||++++||||||||+++|+++|.++|++|+|+||||||+||||+|+++|||||.+||+++|+.+|++
T Consensus 77 ~~~~~~lP~L~KvL~~~~~LSiQvHPd~~~A~~l~~~~p~~Y~D~NhKPEm~iALT~F~al~GFRp~~eI~~~l~~~~el 156 (373)
T PF01238_consen 77 ERFGDRLPFLFKVLDAAKPLSIQVHPDKEQAEKLHDADPRNYKDDNHKPEMAIALTPFEALCGFRPLEEIAEFLKDAPEL 156 (373)
T ss_dssp HHTTSS-SEEEEEEEESS---EEE---HHHHHHCTCCTTCCCHCSCTTTEEEEESS-EEEEEEE--HHHHHHHCCCCHHH
T ss_pred hccccccchhhhhhccCCCcccccCCCHHHHhhhhhcCcccccchhcCCceEEeccchhhcccccchhhhhhhcccChhH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCccccccCcccc--cCCchh---HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHh
Q 014147 177 VDLVGGADAEQCFPVNE--FGRSQE---VKAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKKRQLTDKEMLVLRLEG 251 (430)
Q Consensus 177 ~~l~~~~~~~~~~~~~~--~~~~~~---~~~~l~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 251 (430)
+.+++.....++..... ...+.. .+..++.+|+.+|.++.+.+...+..|.+++++........++.+++.||++
T Consensus 157 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~d~~~~~~~l~~ 236 (373)
T PF01238_consen 157 AELLGGEEAESLEELLSAIEEGDPDELLERPVLKGDFSALMPAGTEHAIEALAALVERQQNSDSTYRSYDLARLILRLNE 236 (373)
T ss_dssp HHHHCCCHHCCHHHHHHHHCTTSHHHHHCCCHHHHHHHHHHTTTHHHHHHHHHHHHHHHCC-HCCCHCC-HHHHHHHHHC
T ss_pred HHHhhhhhhhhHHHHhhhhhccChhhhhhHHHhhhhhhhccccchHHHHHHHHHHHHhhhcccccccccccchhhhhhhh
Confidence 99999876544311111 001111 1245999999999999999999999999888764321122336789999999
Q ss_pred cCCCCceehhhhhcceEEccCCCEEEecCCCceeeccCcEEEEeecCCcEEEcCCCCCccCHHHHHhccccCCCCccccc
Q 014147 252 QYPDDAGVLAAFLLNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAGLTSKHRDIQTLFSMLNRRQGFPQILK 331 (430)
Q Consensus 252 ~yP~D~G~~~~~~Ln~v~l~pGd~i~ipaG~~HAy~~G~~~Eima~SDnv~R~gltpk~~die~ll~~l~~~~~~~~~~~ 331 (430)
+||+|+|+|+ +|||++.|+|||++|+|||+||||++|+|+|||+|||||+|+|||||++|++++++|++|+..++....
T Consensus 237 ~yP~D~G~~~-llLN~v~L~pGeaifl~a~~~HAYl~G~~vE~MA~SDNVlRaGLTpK~iDv~~L~~~l~y~~~~~~~~~ 315 (373)
T PF01238_consen 237 QYPGDVGIFA-LLLNYVELQPGEAIFLPAGEPHAYLSGDCVECMANSDNVLRAGLTPKHIDVPELLEMLTYKPKPPEPAI 315 (373)
T ss_dssp CSTTTTCHCH-CCEEEEEE-TT-EEEEHTTHHEEEEEEEEEEEEESSEEEEECCSCSSEEEHHHHHHC-EEEEEEGGGCC
T ss_pred hccccCCcEE-EEEEEEEecCCceEEecCCCccccccccceeccccccceeccCCccceeEHhHheeeeEeeccCCccee
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999765544322
Q ss_pred cccc---CCceEEeCCCCCceEEEEEEecCCCeEEecCCCCeEEEEEEcCcEEEEeCC
Q 014147 332 GISL---NPYTTRYLPPFEEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAGF 386 (430)
Q Consensus 332 ~~~~---~~~~~~y~~~~~~F~v~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~~~~ 386 (430)
..+. ...+..|.||+++|.+.+++++.|+.... +.++++|++|++|+++|..++
T Consensus 316 ~~~~~~~~~~~~~y~pp~~eF~l~~~~l~~g~~~~~-~~~~~~Illv~~G~~~i~~~~ 372 (373)
T PF01238_consen 316 LPPDAPYDSGSVLYGPPVDEFALSRIDLKKGESFIL-PLDGPSILLVTEGSATIIVSH 372 (373)
T ss_dssp E--ECCEEECEEEEEESSSSEEEEEEECCTTEEEEE--TTS-EEEEEEEEEEEEEETT
T ss_pred ecCccccCCceEEECCCCCeEEEEEEEECCCCeEEC-CCCCceEEEEeCCEEEEEeCC
Confidence 2222 24577899999999999999987766544 568999999999999998643
No 5
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-68 Score=521.85 Aligned_cols=297 Identities=33% Similarity=0.516 Sum_probs=244.9
Q ss_pred CCEEeecccccccCCCCCCcchHhhhhhcCCCCCCCCCCCceEEEEeecCCCceeecCC---CcchHHHHhhCC-CccCc
Q 014147 18 KPLRLQCAVKNYNWGIVGSKSHVSRLFCLNSGTHINPNEPYAEFWIGTHESGASFLDHG---GLSLKEWISKNP-DVLGD 93 (430)
Q Consensus 18 ~~~rL~p~~~~y~WGg~~~~s~l~~l~~~~~~~~~~~~~~~aE~W~g~Hp~~pS~v~~g---~~~L~~~i~~~p-~~LG~ 93 (430)
.|++|+|.+|+|+|||.. |+++++. ++ .++|+||+|+++||++||.|.+| +.+|+++|+ +| ++||.
T Consensus 2 ~~~~l~~~l~~~~WGg~~----L~~lfg~----~~-~~~~~gE~W~~AHp~~~S~v~~~~~~~~~L~el~~-~~~ellG~ 71 (312)
T COG1482 2 EMLFLTPVLQEYIWGGTA----LADLFGY----DP-PSEPIGELWAGAHPNGPSTVANGPGQGKSLSELIA-DPRELLGN 71 (312)
T ss_pred cceecchhheeechhHHH----HHHHhCC----CC-CCCceEeEEEEecCCCCeeEEecCcCCcCHHHHHh-CcHhhcCC
Confidence 489999999999999764 9998832 33 47999999999999999997654 789999999 66 59999
Q ss_pred hhhhhcCCCCCceeeeeccCCCCceeccCChHHHHhhccc-----CCCCCCCCCCCceeEEeccchhhhcCCCchHHHHH
Q 014147 94 RVLNKWGGDLPFLFKVLSVEKALSIQAHPDKELARTLHKS-----QPSLYSDENHKPEMALALTEFEALCGFISLKELRN 168 (430)
Q Consensus 94 ~~~~~fg~~lP~L~KvLda~~~LSIQvHPd~~~A~~~~~~-----~p~~Y~D~n~KpE~~~aL~~~~~~~GFr~~~ei~~ 168 (430)
...+ +||||+|||||+++|||||||||++|+++++- +.|+|+|+||||||.|++++.. -+
T Consensus 72 ~~~~----~FplL~KiLdA~~~LSiQVHP~d~~A~~~~~g~~gkte~w~y~D~~~k~Eli~g~~~~~----~~------- 136 (312)
T COG1482 72 KSFD----RFPLLFKILDANDPLSIQVHPSDEYAEEGEEGILGKTECWYYKDANHKPELIYGLTPAK----SK------- 136 (312)
T ss_pred cchh----hccceeeeeccCCcceEEECCCHHHHhhcccCccCCCcceeecCCCCCceEEEEEchhh----cc-------
Confidence 9654 57899999999999999999999999887443 4699999999999999999711 00
Q ss_pred hhcCCchHHHhhcCccccccCcccccCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhhcccccchHHHHHHH
Q 014147 169 VLCTVPEIVDLVGGADAEQCFPVNEFGRSQEVKAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKKRQLTDKEMLVLR 248 (430)
Q Consensus 169 ~l~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 248 (430)
..+++|++.++ +
T Consensus 137 ----------------------------------------------------~~~e~l~~~i~----------------~ 148 (312)
T COG1482 137 ----------------------------------------------------PAIEELKEMID----------------R 148 (312)
T ss_pred ----------------------------------------------------hhHHHHHHhhh----------------h
Confidence 00112332221 0
Q ss_pred HHhcCCCCceehhhhhcceEEccCCCEEEecCCCceeeccCcEEEEeecCCcEEEcCCCCCccCHHHHHhccccCCCCcc
Q 014147 249 LEGQYPDDAGVLAAFLLNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAGLTSKHRDIQTLFSMLNRRQGFPQ 328 (430)
Q Consensus 249 l~~~yP~D~G~~~~~~Ln~v~l~pGd~i~ipaG~~HAy~~G~~~Eima~SDnv~R~gltpk~~die~ll~~l~~~~~~~~ 328 (430)
.|+|.+++||+++|+|||++||||||||||++|.++|||||||||||+|+|||++|+.++.+++.|+..+..
T Consensus 149 --------~~~~d~~lLn~v~lkpGe~~fl~Agt~HA~~~G~~lEvmqnSDntyR~yd~~r~~d~~~lr~l~~~k~~~~~ 220 (312)
T COG1482 149 --------GGLFDPLLLNRVKLKPGEAFFLPAGTPHAYLKGLVLEVMQNSDNTYRVYDTDRYDDIGELRELHLFKAKDVI 220 (312)
T ss_pred --------ccccchhhhcEEecCCCCEEEecCCCceeeccceEEEEEecCccEEEcccccccccchhHHhhhhccccchh
Confidence 456666899999999999999999999999999999999999999999999999999999999999988766
Q ss_pred ccccccc-CCceEEeCCCCCceEEEEEEecCCCeEEecCCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCe-E
Q 014147 329 ILKGISL-NPYTTRYLPPFEEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYME-F 406 (430)
Q Consensus 329 ~~~~~~~-~~~~~~y~~~~~~F~v~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~-~ 406 (430)
.+...+. ++....|.+|+++|++.++.+.. +. ......+++|++|++|+++++.+++ ...|++|+++||||..+ +
T Consensus 221 ~~~~~~~~~~~~~~~~v~~~~F~l~~~~i~~-~~-~~~~~~~~~il~v~eG~~~l~~~~~-~~~l~~G~s~~ipa~~~~~ 297 (312)
T COG1482 221 TLPTQPRKQGAELTYPVPNEDFALYKWDISG-TA-EFIKQESFSILLVLEGEGTLIGGGQ-TLKLKKGESFFIPANDGPY 297 (312)
T ss_pred hcCCcccccCceEEEeccccceEEEEEeccC-hh-hhccCCCcEEEEEEcCeEEEecCCE-EEEEcCCcEEEEEcCCCcE
Confidence 6543333 46688899999999999999973 22 2234569999999999999999877 99999999999999976 9
Q ss_pred EEEecCccEEEE
Q 014147 407 TIASQSKELHLY 418 (430)
Q Consensus 407 ~i~~~~~~~~~~ 418 (430)
+++|....+.++
T Consensus 298 ~i~g~~~~~~v~ 309 (312)
T COG1482 298 TIEGEGEEAIVS 309 (312)
T ss_pred EEEecceEEEEE
Confidence 999943333333
No 6
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=100.00 E-value=3.8e-64 Score=499.18 Aligned_cols=292 Identities=32% Similarity=0.455 Sum_probs=236.1
Q ss_pred CEEeecccccccCCCCCCcchHhhhhhcCCCCCCCCCCCceEEEEe-ecCCCceeecCC---CcchHHHHhhCCCccCch
Q 014147 19 PLRLQCAVKNYNWGIVGSKSHVSRLFCLNSGTHINPNEPYAEFWIG-THESGASFLDHG---GLSLKEWISKNPDVLGDR 94 (430)
Q Consensus 19 ~~rL~p~~~~y~WGg~~~~s~l~~l~~~~~~~~~~~~~~~aE~W~g-~Hp~~pS~v~~g---~~~L~~~i~~~p~~LG~~ 94 (430)
|++|+|.+++|+|||. .|+++++. +.+ ++++||+|++ +||+++|++.+| +.+|.++|+++|++||..
T Consensus 1 ~~~~~p~~~~~~WGG~----~l~~~~g~----~~~-~~~~aE~W~~s~hp~~~S~v~~g~~~g~~L~~~i~~~~~llG~~ 71 (302)
T TIGR00218 1 PLFIFPVFKERDWGGT----ALADLFGY----SIP-SQQTGECWAGSAHPKGPSTVLNGPYKGVSLIDLWEKHRELLGRA 71 (302)
T ss_pred CccccccccccCccHH----HHHHHhCC----CCC-CCCccceEEEEecCCCceEEecCCcCCCCHHHHHHhCHHhhCCc
Confidence 5789999999999985 48888732 233 4689999995 999999997553 679999999999999988
Q ss_pred hhhhcCCCCCceeeeeccCCCCceeccCChHHHHhhcccCCCCCCCCCCCceeEEeccc---hhhhcCCCchHHHHHhhc
Q 014147 95 VLNKWGGDLPFLFKVLSVEKALSIQAHPDKELARTLHKSQPSLYSDENHKPEMALALTE---FEALCGFISLKELRNVLC 171 (430)
Q Consensus 95 ~~~~fg~~lP~L~KvLda~~~LSIQvHPd~~~A~~~~~~~p~~Y~D~n~KpE~~~aL~~---~~~~~GFr~~~ei~~~l~ 171 (430)
..+ +||||+|+||++++|||||||||++|++++. ++.||+|+||+++. ...++|++..
T Consensus 72 ~~~----~~P~L~KiLda~~~LSIQVHPdD~~a~~~~~-------~~~gk~e~w~i~~~~~~~~~~~g~~~~-------- 132 (302)
T TIGR00218 72 DGD----RFPFLFKVLDAAKPLSIQVHPDDDYAELHEE-------GELGKTECWYIIDCDEAAEIIKGHLKN-------- 132 (302)
T ss_pred ccc----cCceEEEEecCCCCceeEECCChHHHHhccc-------cccccEEEEEeecCCccHHhhhcchhc--------
Confidence 643 5999999999999999999999999998753 35799999999984 3445553311
Q ss_pred CCchHHHhhcCccccccCcccccCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHh
Q 014147 172 TVPEIVDLVGGADAEQCFPVNEFGRSQEVKAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKKRQLTDKEMLVLRLEG 251 (430)
Q Consensus 172 ~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 251 (430)
++ + ++.+.+
T Consensus 133 ----------------------------~~---------------~-------~~~~~i--------------------- 141 (302)
T TIGR00218 133 ----------------------------SK---------------E-------ELWTMI--------------------- 141 (302)
T ss_pred ----------------------------Ch---------------H-------HHHHHH---------------------
Confidence 00 1 111111
Q ss_pred cCCCCceehhhhhcceEEccCCCEEEecCCCceeeccCcEEEEeecCCcEEEcCCCCCccCHHHHHhccccCCCCccccc
Q 014147 252 QYPDDAGVLAAFLLNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAGLTSKHRDIQTLFSMLNRRQGFPQILK 331 (430)
Q Consensus 252 ~yP~D~G~~~~~~Ln~v~l~pGd~i~ipaG~~HAy~~G~~~Eima~SDnv~R~gltpk~~die~ll~~l~~~~~~~~~~~ 331 (430)
|.|.|+ ++||+++|+|||+|||||||||||..|.++|||||||||||+|+|+|++|++++++|++|+..++....
T Consensus 142 ----~~g~~~-~~ln~v~v~~Gd~i~ipaGt~HA~~g~~~~Eiq~~SD~t~R~~d~~r~l~ve~~l~~~~~~~~~~~~~~ 216 (302)
T TIGR00218 142 ----EDGLFK-LLLNRIKLKPGDFFYVPSGTPHAYKGGLVLEVMQNSDNVYRAGDTDKYLDIEKLVEVLTFPHVPEFHLK 216 (302)
T ss_pred ----hcCcHH-HHhcccccCCCCEEEeCCCCcccccCceEEEEEcCCCcEEEeeccCcccCHHHHHhhccCCCCCccccc
Confidence 224444 699999999999999999999998777799999999999999999999999999999999987765444
Q ss_pred ccccC-CceEEeCCCCCceEEEEEEecCCCeEEecCCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCe-EEEE
Q 014147 332 GISLN-PYTTRYLPPFEEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYME-FTIA 409 (430)
Q Consensus 332 ~~~~~-~~~~~y~~~~~~F~v~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~-~~i~ 409 (430)
..+.. +....|.+++++|.+.++++... ......++++|++|++|+++|..+++ +..|++|+++||||+.+ ++++
T Consensus 217 ~~~~~~~~~~~~~~~~~~F~~~~~~~~~~--~~~~~~~~~~il~v~~G~~~i~~~~~-~~~l~~G~~~~ipa~~~~~~i~ 293 (302)
T TIGR00218 217 GQPQKFGAEILFMVPTEYFSVYKWDISGK--AEFIQQQSALILSVLEGSGRIKSGGK-TLPLKKGESFFIPAHLGPFTIE 293 (302)
T ss_pred cccccCCcEEEEcCCCCCeEEEEEEeCCc--eeeccCCCcEEEEEEcceEEEEECCE-EEEEecccEEEEccCCccEEEE
Confidence 33332 44667889999999999999633 23334568999999999999988776 89999999999999986 9998
Q ss_pred ecCccEEEEEE
Q 014147 410 SQSKELHLYRA 420 (430)
Q Consensus 410 ~~~~~~~~~~a 420 (430)
+ +.+++.+
T Consensus 294 g---~~~~~~~ 301 (302)
T TIGR00218 294 G---ECEAIVS 301 (302)
T ss_pred e---eEEEEEE
Confidence 7 4566655
No 7
>PRK11171 hypothetical protein; Provisional
Probab=98.09 E-value=0.0001 Score=72.31 Aligned_cols=143 Identities=13% Similarity=0.090 Sum_probs=86.3
Q ss_pred EEccCCCEEEecCCCceeec-cCc-EEEEeecCCcEEEcCCCCCccC-HHHHHhccccCCCCcccccccccC---CceEE
Q 014147 268 VKLNRGEALCIGANEPHAYI-RGE-CIECMATSDNVVRAGLTSKHRD-IQTLFSMLNRRQGFPQILKGISLN---PYTTR 341 (430)
Q Consensus 268 v~l~pGd~i~ipaG~~HAy~-~G~-~~Eima~SDnv~R~gltpk~~d-ie~ll~~l~~~~~~~~~~~~~~~~---~~~~~ 341 (430)
..|++||++++|+|++|.|. .|+ -.++. +++.-.++..-+ .. .++-=+ ...+...+.. +....
T Consensus 103 ~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l-----~v~~~y~~~~~~~~p---~~~~~~---~~d~~~~~~~g~~g~~~~ 171 (266)
T PRK11171 103 HALSEGGYAYLPPGSDWTLRNAGAEDARFH-----WIRKRYEPVEGHEAP---EAFVGN---ESDIEPIPMPGTDGVWAT 171 (266)
T ss_pred EEECCCCEEEECCCCCEEEEECCCCCEEEE-----EEEcCCeEcCCCCCC---CeEecc---hhcccccccCCCCCeEEE
Confidence 48999999999999999985 354 44443 233222222211 00 000000 0001111111 22111
Q ss_pred --e-CCC--CCceEEEEEEecCCCeEEec-CCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEecCccE
Q 014147 342 --Y-LPP--FEEFEVDCCVIPQAASLVFP-SVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQSKEL 415 (430)
Q Consensus 342 --y-~~~--~~~F~v~~~~~~~g~~~~~~-~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~~~~~~ 415 (430)
. .+. ...|.+.++++++|...... ....-.+++|++|++++..+++ ...|++||+++++++..-.+.+.+..-
T Consensus 172 ~~~~~p~~~~~~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~~-~~~l~~GD~i~~~~~~~h~~~N~g~~~ 250 (266)
T PRK11171 172 TRLVDPEDLRFDMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLNND-WVEVEAGDFIWMRAYCPQACYAGGPGP 250 (266)
T ss_pred EEeeCchhcCCCcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEECCE-EEEeCCCCEEEECCCCCEEEECCCCCc
Confidence 1 222 23479999999999776542 3445689999999999998888 999999999999999887777642223
Q ss_pred EEEEEec
Q 014147 416 HLYRAGV 422 (430)
Q Consensus 416 ~~~~a~~ 422 (430)
..|..|-
T Consensus 251 ~~yl~~k 257 (266)
T PRK11171 251 FRYLLYK 257 (266)
T ss_pred EEEEEEc
Confidence 3444443
No 8
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=97.74 E-value=0.00037 Score=68.21 Aligned_cols=69 Identities=16% Similarity=0.182 Sum_probs=51.8
Q ss_pred CceEEEEEEecCCCeEEe-cCCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEec-CccEE
Q 014147 347 EEFEVDCCVIPQAASLVF-PSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQ-SKELH 416 (430)
Q Consensus 347 ~~F~v~~~~~~~g~~~~~-~~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~~-~~~~~ 416 (430)
.+|.+..+++.+|.+.-. ..+.-...+.+++|++.+..+++ ...+++||++||||+..=.+.+. +++++
T Consensus 177 ~~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~g~-~~~V~~GD~i~i~~~~~h~~~~~G~~~~~ 247 (260)
T TIGR03214 177 FDMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLDNN-WVPVEAGDYIWMGAYCPQACYAGGRGEFR 247 (260)
T ss_pred CCcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEECCE-EEEecCCCEEEECCCCCEEEEecCCCcEE
Confidence 378888999998876522 22233468899999999998888 99999999999999987334442 34443
No 9
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=97.73 E-value=0.00085 Score=68.84 Aligned_cols=83 Identities=13% Similarity=0.153 Sum_probs=56.3
Q ss_pred CCceEEEEEEecCCCeEEecCCC-CeEEEEEEcCcEEEEeC--C--cceEEeccccEEEEeCCCeEEEEec-CccEEEEE
Q 014147 346 FEEFEVDCCVIPQAASLVFPSVA-GPSLFLFISGNGTLSAG--F--SKEQIVEEGEVLFVPAYMEFTIASQ-SKELHLYR 419 (430)
Q Consensus 346 ~~~F~v~~~~~~~g~~~~~~~~~-~~~il~v~~G~~~i~~~--~--~~~~~l~~Ge~~fIpa~~~~~i~~~-~~~~~~~~ 419 (430)
...+++.++++.+|.....-.+. .-.+++|++|++++... + .....+++||+++||++..=.+++. +++++++.
T Consensus 242 ~~~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~ 321 (367)
T TIGR03404 242 SKTIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLE 321 (367)
T ss_pred cceEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEE
Confidence 35688899999888643322223 34799999999988641 1 1267899999999999988666663 44565544
Q ss_pred EecCCCCccC
Q 014147 420 AGVNSSFFQA 429 (430)
Q Consensus 420 a~~~~~~~~~ 429 (430)
...++.|.+
T Consensus 322 -if~s~~~~~ 330 (367)
T TIGR03404 322 -VFKADRFAD 330 (367)
T ss_pred -EECCCCCce
Confidence 444455543
No 10
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=97.61 E-value=0.0008 Score=51.50 Aligned_cols=66 Identities=17% Similarity=0.363 Sum_probs=48.9
Q ss_pred EEEecCCCeEEecCCCCe-EEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEec-CccEEEEE
Q 014147 353 CCVIPQAASLVFPSVAGP-SLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQ-SKELHLYR 419 (430)
Q Consensus 353 ~~~~~~g~~~~~~~~~~~-~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~~-~~~~~~~~ 419 (430)
.+++.+|.......+... .+++|++|++++..+++ ...+++||+++||++..-.+.+. ++++.++.
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~-~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~ 69 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDGE-RVELKPGDAIYIPPGVPHQVRNPGDEPARFLV 69 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEETTE-EEEEETTEEEEEETTSEEEEEEESSSEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEEccE-EeEccCCEEEEECCCCeEEEEECCCCCEEEEE
Confidence 355666765433333444 89999999999998877 99999999999999998666663 44555443
No 11
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=97.47 E-value=0.0021 Score=55.98 Aligned_cols=80 Identities=9% Similarity=-0.000 Sum_probs=60.3
Q ss_pred CCCCCceEEEEEEecCCCeEEecCCCCeEEEEEEcCcEEEE-eC-CcceEEeccccEEEEeCCCeEEEEecCccEEEEEE
Q 014147 343 LPPFEEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLS-AG-FSKEQIVEEGEVLFVPAYMEFTIASQSKELHLYRA 420 (430)
Q Consensus 343 ~~~~~~F~v~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~-~~-~~~~~~l~~Ge~~fIpa~~~~~i~~~~~~~~~~~a 420 (430)
..+...|.+.++++.+|+...........+++|++|++++. .+ +. .+.|++||++++|++..-.+.+. ++++++.+
T Consensus 29 ~~~~~~~~~~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~-~~~L~aGD~i~~~~~~~H~~~N~-e~~~~l~v 106 (125)
T PRK13290 29 KDDGMGFSFHETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGE-VHPIRPGTMYALDKHDRHYLRAG-EDMRLVCV 106 (125)
T ss_pred ecCCCCEEEEEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCE-EEEeCCCeEEEECCCCcEEEEcC-CCEEEEEE
Confidence 33456899999999888643322223357999999999998 54 66 89999999999999988777774 67777666
Q ss_pred ecCC
Q 014147 421 GVNS 424 (430)
Q Consensus 421 ~~~~ 424 (430)
+.+.
T Consensus 107 ~tP~ 110 (125)
T PRK13290 107 FNPP 110 (125)
T ss_pred ECCC
Confidence 5543
No 12
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=97.45 E-value=0.0014 Score=57.12 Aligned_cols=78 Identities=13% Similarity=0.256 Sum_probs=60.4
Q ss_pred CCceEEEEEEecCCCeEEecCC-CCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEec-CccEEEEEEecC
Q 014147 346 FEEFEVDCCVIPQAASLVFPSV-AGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQ-SKELHLYRAGVN 423 (430)
Q Consensus 346 ~~~F~v~~~~~~~g~~~~~~~~-~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~~-~~~~~~~~a~~~ 423 (430)
.+.|.+.++.+.+|....+..+ ....+++|++|.+++..++. +..|+.||+++||+|+.=++.+. ..++.++-...+
T Consensus 33 ~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~-~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~p 111 (127)
T COG0662 33 GDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGE-EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQSP 111 (127)
T ss_pred CCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCE-EEEecCCCEEEECCCCcEEEEcCCCcceEEEEEecC
Confidence 3689999999988866433222 35789999999999999888 99999999999999998778774 345666555444
Q ss_pred C
Q 014147 424 S 424 (430)
Q Consensus 424 ~ 424 (430)
.
T Consensus 112 ~ 112 (127)
T COG0662 112 P 112 (127)
T ss_pred C
Confidence 3
No 13
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=97.23 E-value=0.005 Score=55.40 Aligned_cols=112 Identities=12% Similarity=0.175 Sum_probs=74.6
Q ss_pred ccCHHHHHhccccCCCCccccccccc-C-CceEEeCCCCCceEEEEEEecCCCeEEecCC-CCeEEEEEEcCcEEEEeCC
Q 014147 310 HRDIQTLFSMLNRRQGFPQILKGISL-N-PYTTRYLPPFEEFEVDCCVIPQAASLVFPSV-AGPSLFLFISGNGTLSAGF 386 (430)
Q Consensus 310 ~~die~ll~~l~~~~~~~~~~~~~~~-~-~~~~~y~~~~~~F~v~~~~~~~g~~~~~~~~-~~~~il~v~~G~~~i~~~~ 386 (430)
--++.++++.|.-............. . |....+. ..+.|.+.++.+.+|..+.+-.+ .....++|++|.+++..++
T Consensus 23 ~q~vK~~v~~lk~~~~~E~~~~~~~~rpWG~~~~l~-~~~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~ 101 (151)
T PF01050_consen 23 SQDVKEVVEQLKQKGRYEAKEHRRVYRPWGSYEVLD-EGEGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDD 101 (151)
T ss_pred hhhhHHHHHhhhcccccccccceeEecCCcEEEEEE-ccCCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECC
Confidence 35677777776543322111011001 1 2222222 34689999999999987665332 3567999999999999888
Q ss_pred cceEEeccccEEEEeCCCeEEEEec-CccEEEEEEecC
Q 014147 387 SKEQIVEEGEVLFVPAYMEFTIASQ-SKELHLYRAGVN 423 (430)
Q Consensus 387 ~~~~~l~~Ge~~fIpa~~~~~i~~~-~~~~~~~~a~~~ 423 (430)
. ...+.+|++++||++..-+|.+. +.++.++-.-.+
T Consensus 102 ~-~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEVq~G 138 (151)
T PF01050_consen 102 E-EFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEVQTG 138 (151)
T ss_pred E-EEEEcCCCEEEECCCCEEEEECCCCcCcEEEEEecC
Confidence 7 89999999999999998888763 446666655443
No 14
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=96.86 E-value=0.019 Score=46.58 Aligned_cols=72 Identities=18% Similarity=0.215 Sum_probs=50.1
Q ss_pred CceEEEEEEecCCCeEEe-cCCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEec-CccEEEEE
Q 014147 347 EEFEVDCCVIPQAASLVF-PSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQ-SKELHLYR 419 (430)
Q Consensus 347 ~~F~v~~~~~~~g~~~~~-~~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~~-~~~~~~~~ 419 (430)
+.|+.-.++++++..-.. ...+...++.|++|.+.+.-.+. +..+.+|++++||++..+.|++- ..+..++-
T Consensus 10 ~~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~~-~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF 83 (85)
T PF11699_consen 10 PFFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHET-SFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFF 83 (85)
T ss_dssp TS-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETTE-EEEEETT-EEEE-TT-EEEEEE-SSS-EEEEE
T ss_pred CCceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcCc-EEEEeCCCEEEECCCCEEEEEECCCCcEEEEE
Confidence 389999999987643222 23345779999999999998777 89999999999999999999984 34555553
No 15
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=96.69 E-value=0.015 Score=50.43 Aligned_cols=60 Identities=17% Similarity=0.293 Sum_probs=50.0
Q ss_pred CCCceEEEEEEecCCCeEEecCCC-CeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCe
Q 014147 345 PFEEFEVDCCVIPQAASLVFPSVA-GPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYME 405 (430)
Q Consensus 345 ~~~~F~v~~~~~~~g~~~~~~~~~-~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~ 405 (430)
+...+.+..+.+.+|+....-.++ +..+++|++|++++..++. ...+++||+++||++..
T Consensus 39 ~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g~-~~~l~~Gd~i~ip~g~~ 99 (131)
T COG1917 39 EGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEGE-KKELKAGDVIIIPPGVV 99 (131)
T ss_pred CCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecCC-ceEecCCCEEEECCCCe
Confidence 356788889999888765444444 6799999999999987766 89999999999999986
No 16
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=96.53 E-value=0.0069 Score=54.49 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=25.3
Q ss_pred EccCCCEEEecCCCceeecc-C--c--EEEEeecC
Q 014147 269 KLNRGEALCIGANEPHAYIR-G--E--CIECMATS 298 (430)
Q Consensus 269 ~l~pGd~i~ipaG~~HAy~~-G--~--~~Eima~S 298 (430)
.+++||++|||+|+.|.+.. | . ++|+|.-.
T Consensus 105 ~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEVq~G~ 139 (151)
T PF01050_consen 105 TLKEGDSVYIPRGAKHRIENPGKTPLEIIEVQTGE 139 (151)
T ss_pred EEcCCCEEEECCCCEEEEECCCCcCcEEEEEecCC
Confidence 68999999999999999863 3 2 89999854
No 17
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=96.42 E-value=0.017 Score=58.52 Aligned_cols=60 Identities=15% Similarity=0.311 Sum_probs=44.4
Q ss_pred cCCCeEEecCCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEecCccEEEE
Q 014147 357 PQAASLVFPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQSKELHLY 418 (430)
Q Consensus 357 ~~g~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~~~~~~~~~ 418 (430)
.+|...........+|+.|++|+|+...+++ .+.+++||+|.||+-..++..+. ++..+|
T Consensus 258 ~~G~~t~~~r~T~s~Vf~VieG~G~s~ig~~-~~~W~~gD~f~vPsW~~~~h~a~-~da~Lf 317 (335)
T TIGR02272 258 PKGFRTATYRSTDATVFCVVEGRGQVRIGDA-VFRFSPKDVFVVPSWHPVRFEAS-DDAVLF 317 (335)
T ss_pred CCCCCCCCccccccEEEEEEeCeEEEEECCE-EEEecCCCEEEECCCCcEecccC-CCeEEE
Confidence 3454433333345789999999999988888 89999999999998877777663 344344
No 18
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=96.20 E-value=0.15 Score=54.21 Aligned_cols=110 Identities=8% Similarity=0.128 Sum_probs=72.8
Q ss_pred cCHHHHHhccccCCCCccccccccc-C-Cc-eEEeCCCCCceEEEEEEecCCCeEEec-CCCCeEEEEEEcCcEEEEeCC
Q 014147 311 RDIQTLFSMLNRRQGFPQILKGISL-N-PY-TTRYLPPFEEFEVDCCVIPQAASLVFP-SVAGPSLFLFISGNGTLSAGF 386 (430)
Q Consensus 311 ~die~ll~~l~~~~~~~~~~~~~~~-~-~~-~~~y~~~~~~F~v~~~~~~~g~~~~~~-~~~~~~il~v~~G~~~i~~~~ 386 (430)
-++.++++.|.-.. ....+..... . .+ .... .....|.+.++++.+|...... ...+-.+++|++|.+++..++
T Consensus 346 q~vk~~v~~l~~~~-~~~~~~~~~~~rpWG~~~~l-~~g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg 423 (478)
T PRK15460 346 QDVKKVVEQIKADG-RHEHRVHREVYRPWGKYDSI-DAGDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDG 423 (478)
T ss_pred hhHHHHHHHHHhcC-CchhhccccEECCCCceEee-cCCCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECC
Confidence 57888888886322 1111111111 1 12 1222 2356899999999988643222 224558999999999999888
Q ss_pred cceEEeccccEEEEeCCCeEEEEec-CccEEEEEEecC
Q 014147 387 SKEQIVEEGEVLFVPAYMEFTIASQ-SKELHLYRAGVN 423 (430)
Q Consensus 387 ~~~~~l~~Ge~~fIpa~~~~~i~~~-~~~~~~~~a~~~ 423 (430)
. +..|.+||+++||++..=++.+. +++++++...++
T Consensus 424 ~-~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~~g 460 (478)
T PRK15460 424 D-IKLLGENESIYIPLGATHCLENPGKIPLDLIEVRSG 460 (478)
T ss_pred E-EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcC
Confidence 8 99999999999999987667763 457777666544
No 19
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=96.14 E-value=0.087 Score=41.42 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=43.9
Q ss_pred CCceEEEEEEecCCCeEEecCCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEE
Q 014147 346 FEEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIA 409 (430)
Q Consensus 346 ~~~F~v~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~ 409 (430)
..-|.+-.++..+|.. .... ..-..+++|+|+++|..+++....+++||++++|++...+.+
T Consensus 4 ~g~~~~g~w~~~pg~~-~~~~-~~~E~~~vleG~v~it~~~G~~~~~~aGD~~~~p~G~~~~w~ 65 (74)
T PF05899_consen 4 DGVFSAGVWECTPGKF-PWPY-PEDEFFYVLEGEVTITDEDGETVTFKAGDAFFLPKGWTGTWE 65 (74)
T ss_dssp CTSEEEEEEEEECEEE-EEEE-SSEEEEEEEEEEEEEEETTTEEEEEETTEEEEE-TTEEEEEE
T ss_pred CCCEEEEEEEECCcee-EeeC-CCCEEEEEEEeEEEEEECCCCEEEEcCCcEEEECCCCEEEEE
Confidence 3456777777666642 2211 236788999999999985544899999999999999864443
No 20
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=96.09 E-value=0.02 Score=51.41 Aligned_cols=55 Identities=13% Similarity=0.212 Sum_probs=39.9
Q ss_pred CCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEecCccEEEEEEecC
Q 014147 367 VAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQSKELHLYRAGVN 423 (430)
Q Consensus 367 ~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~~~~~~~~~~a~~~ 423 (430)
...--+-+|++|..+|..+++ .+..++||++|||.|..+++... +..+++....+
T Consensus 93 l~YDEi~~VlEG~L~i~~~G~-~~~A~~GDvi~iPkGs~I~fst~-~~a~~~Yv~yP 147 (152)
T PF06249_consen 93 LTYDEIKYVLEGTLEISIDGQ-TVTAKPGDVIFIPKGSTITFSTP-DYARFFYVTYP 147 (152)
T ss_dssp -SSEEEEEEEEEEEEEEETTE-EEEEETT-EEEE-TT-EEEEEEE-EEEEEEEEEES
T ss_pred eecceEEEEEEeEEEEEECCE-EEEEcCCcEEEECCCCEEEEecC-CCEEEEEEECC
Confidence 345689999999999998877 99999999999999999988763 23444444333
No 21
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=96.06 E-value=0.047 Score=53.49 Aligned_cols=71 Identities=15% Similarity=0.261 Sum_probs=54.2
Q ss_pred CceEEEEEEecCCCeEEe-cCCCC-eEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEec-CccEEEE
Q 014147 347 EEFEVDCCVIPQAASLVF-PSVAG-PSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQ-SKELHLY 418 (430)
Q Consensus 347 ~~F~v~~~~~~~g~~~~~-~~~~~-~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~~-~~~~~~~ 418 (430)
..|.+..+++.+|..... ....+ -..++|++|+++|..+++ ...|++||++++|++..-++.+. +++++++
T Consensus 56 ~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g~-~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l 129 (260)
T TIGR03214 56 ATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEGE-THELREGGYAYLPPGSKWTLANAQAEDARFF 129 (260)
T ss_pred CcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECCE-EEEECCCCEEEECCCCCEEEEECCCCCEEEE
Confidence 579999999987643221 11234 579999999999998887 89999999999999998888773 3445443
No 22
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=95.94 E-value=0.018 Score=50.33 Aligned_cols=57 Identities=25% Similarity=0.332 Sum_probs=47.0
Q ss_pred CCeEEEEEEcCcEEEEeCC--cceEEeccccEEEEeCCCe-EEEEecCccEEEEEEecCCC
Q 014147 368 AGPSLFLFISGNGTLSAGF--SKEQIVEEGEVLFVPAYME-FTIASQSKELHLYRAGVNSS 425 (430)
Q Consensus 368 ~~~~il~v~~G~~~i~~~~--~~~~~l~~Ge~~fIpa~~~-~~i~~~~~~~~~~~a~~~~~ 425 (430)
....++.++.|++.|.-++ ++.+.+..||+++|||+++ .++.. +.++.++-||-+..
T Consensus 63 ~aHEVl~vlrgqA~l~iGG~~G~el~v~~GDvlliPAGvGH~rl~s-S~DF~VvGaYp~G~ 122 (163)
T COG4297 63 GAHEVLGVLRGQAGLQIGGADGQELEVGEGDVLLIPAGVGHCRLHS-SADFQVVGAYPPGQ 122 (163)
T ss_pred CcceEEEEecceeEEEecCCCCceeeecCCCEEEEecCcccccccC-CCCeEEEcccCCcc
Confidence 3467999999999986432 2389999999999999999 88887 57899999986654
No 23
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=95.91 E-value=0.086 Score=46.71 Aligned_cols=73 Identities=14% Similarity=0.157 Sum_probs=52.6
Q ss_pred CceEEEEEEecCCCeEEecCC-CCeEEEEEEcCcEEEEeCCc-----ceEEeccccEEEEeCCCeEEEEec-CccEEEEE
Q 014147 347 EEFEVDCCVIPQAASLVFPSV-AGPSLFLFISGNGTLSAGFS-----KEQIVEEGEVLFVPAYMEFTIASQ-SKELHLYR 419 (430)
Q Consensus 347 ~~F~v~~~~~~~g~~~~~~~~-~~~~il~v~~G~~~i~~~~~-----~~~~l~~Ge~~fIpa~~~~~i~~~-~~~~~~~~ 419 (430)
..+.+.++++.+|.......+ ....+++|++|++++...+. ....+++||+++||++..-.+.+. ++++.++.
T Consensus 28 ~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~ 107 (146)
T smart00835 28 LGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVA 107 (146)
T ss_pred CceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEEE
Confidence 479999999988865433222 25689999999999864321 168899999999999987555542 45666653
No 24
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=95.91 E-value=0.051 Score=45.84 Aligned_cols=62 Identities=16% Similarity=0.256 Sum_probs=41.7
Q ss_pred CCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEec-CccEEEEEEecCCCCcc
Q 014147 366 SVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQ-SKELHLYRAGVNSSFFQ 428 (430)
Q Consensus 366 ~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~~-~~~~~~~~a~~~~~~~~ 428 (430)
..+.+.+.+|++|++++..+++ ...+++|+.++|+++........ +++...+..+...+.+.
T Consensus 20 ~h~~~~i~~v~~G~~~~~~~~~-~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~~~~~~~ 82 (136)
T PF02311_consen 20 WHDFYEIIYVLSGEGTLHIDGQ-EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYFSPDFLE 82 (136)
T ss_dssp TT-SEEEEEEEEE-EEEEETTE-EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE---GGG
T ss_pred ECCCEEEEEEeCCEEEEEECCE-EEEEECCEEEEecCCccEEEecCCCCCEEEEEEEECHHHHH
Confidence 3567999999999999998888 99999999999999987555553 23677777766665543
No 25
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=95.86 E-value=0.22 Score=52.88 Aligned_cols=78 Identities=14% Similarity=0.253 Sum_probs=59.3
Q ss_pred CCceEEEEEEecCCCeEEec-CCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEec-CccEEEEEEecC
Q 014147 346 FEEFEVDCCVIPQAASLVFP-SVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQ-SKELHLYRAGVN 423 (430)
Q Consensus 346 ~~~F~v~~~~~~~g~~~~~~-~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~~-~~~~~~~~a~~~ 423 (430)
.+.|.+.++++.+|...... ...+-.+++|++|++++..++. +..|++||+++||++..=.+.+. +++++++....+
T Consensus 373 ~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg~-~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~~ 451 (468)
T TIGR01479 373 GDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGDE-TLLLTENESTYIPLGVIHRLENPGKIPLELIEVQSG 451 (468)
T ss_pred CCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECCE-EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcC
Confidence 46899999999988643321 1224457799999999998888 99999999999999988666663 457777766654
Q ss_pred C
Q 014147 424 S 424 (430)
Q Consensus 424 ~ 424 (430)
.
T Consensus 452 ~ 452 (468)
T TIGR01479 452 S 452 (468)
T ss_pred C
Confidence 3
No 26
>PRK11171 hypothetical protein; Provisional
Probab=95.78 E-value=0.077 Score=52.10 Aligned_cols=74 Identities=12% Similarity=0.200 Sum_probs=56.3
Q ss_pred CCceEEEEEEecCCCeEEecCC--CCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEec-CccEEEEEE
Q 014147 346 FEEFEVDCCVIPQAASLVFPSV--AGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQ-SKELHLYRA 420 (430)
Q Consensus 346 ~~~F~v~~~~~~~g~~~~~~~~--~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~~-~~~~~~~~a 420 (430)
...|.+..+++.+|........ .+-.+++|++|++++..+++ +..|.+||++++|++..-++.+. +++++++..
T Consensus 58 ~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~g~-~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v 134 (266)
T PRK11171 58 GATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLEGK-THALSEGGYAYLPPGSDWTLRNAGAEDARFHWI 134 (266)
T ss_pred CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEECCE-EEEECCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence 4679999999988754322111 34678999999999998888 99999999999999988777763 445555544
No 27
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=95.47 E-value=0.13 Score=47.43 Aligned_cols=74 Identities=7% Similarity=0.014 Sum_probs=51.6
Q ss_pred eEEEEEEecCCCeE-EecCCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEec-CccEEEEEEecC
Q 014147 349 FEVDCCVIPQAASL-VFPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQ-SKELHLYRAGVN 423 (430)
Q Consensus 349 F~v~~~~~~~g~~~-~~~~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~~-~~~~~~~~a~~~ 423 (430)
+.+..+++.+|... ....+.+..+++|++|++++..++. .+.|+.||++++|++..=.+.+. +.+++++.+..+
T Consensus 107 ~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~~~-~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~p 182 (185)
T PRK09943 107 LAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTINGQ-DYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHTP 182 (185)
T ss_pred eEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEECCE-EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeCC
Confidence 44444455555321 1223567889999999999998887 99999999999999987444442 445666665543
No 28
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=95.27 E-value=0.25 Score=43.58 Aligned_cols=75 Identities=17% Similarity=0.135 Sum_probs=48.4
Q ss_pred CceEEEEEEecCCCeEEecCCCCeEEEEEEcCcEEEE--eCCc-------ceEE--eccccEEEEeCCCeEEEEecC-cc
Q 014147 347 EEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLS--AGFS-------KEQI--VEEGEVLFVPAYMEFTIASQS-KE 414 (430)
Q Consensus 347 ~~F~v~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~--~~~~-------~~~~--l~~Ge~~fIpa~~~~~i~~~~-~~ 414 (430)
..+.+..+.+.+|.....--++...+++|++|++++. ..+. .... +++||+++||++....+.+.+ .+
T Consensus 32 ~~~~~~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~ 111 (144)
T PF00190_consen 32 NGVAVRRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDE 111 (144)
T ss_dssp TTEEEEEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSS
T ss_pred cceEEEeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEEcCCCCC
Confidence 4567777777777543322236899999999999964 2221 1344 999999999999987777742 33
Q ss_pred EEEEEEe
Q 014147 415 LHLYRAG 421 (430)
Q Consensus 415 ~~~~~a~ 421 (430)
...+.++
T Consensus 112 ~~~~~~f 118 (144)
T PF00190_consen 112 ALVLIIF 118 (144)
T ss_dssp EEEEEEE
T ss_pred CEEEEEE
Confidence 4344433
No 29
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=94.33 E-value=0.052 Score=46.43 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=25.9
Q ss_pred hcceEEccCCCEEEecCCCceee--ccCc-EEEEeecCC
Q 014147 264 LLNYVKLNRGEALCIGANEPHAY--IRGE-CIECMATSD 299 (430)
Q Consensus 264 ~Ln~v~l~pGd~i~ipaG~~HAy--~~G~-~~Eima~SD 299 (430)
+=.+..+.|||+||||||+||-- .+-. +.-+.+.||
T Consensus 86 LE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIaRsD 124 (142)
T COG4101 86 LEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIARSD 124 (142)
T ss_pred eeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEEccC
Confidence 34567899999999999999963 3333 555555555
No 30
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=94.28 E-value=0.46 Score=42.39 Aligned_cols=80 Identities=14% Similarity=0.166 Sum_probs=48.9
Q ss_pred CCceEEEEEEecCCCeEEecCCCCeEEEEEEcCcEEEEeC-------Cc-ceEEeccccEEEEeCCCeEEEEec--CccE
Q 014147 346 FEEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAG-------FS-KEQIVEEGEVLFVPAYMEFTIASQ--SKEL 415 (430)
Q Consensus 346 ~~~F~v~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~~~-------~~-~~~~l~~Ge~~fIpa~~~~~i~~~--~~~~ 415 (430)
..++.|+.-++.+|...-.-.+.+=.+++|++|+|++--. ++ +++.+-++++|.||.+..-++-++ .+++
T Consensus 41 mkevEVwlQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDl 120 (167)
T PF02041_consen 41 MKEVEVWLQTFAPGSATPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDL 120 (167)
T ss_dssp -SSEEEEEEEE-TT-B--EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-E
T ss_pred ceeeeEEeeeecCCCCCCCccccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcce
Confidence 5789999999988865444345677899999999998521 22 178889999999999988666664 3678
Q ss_pred EEEEEecCCC
Q 014147 416 HLYRAGVNSS 425 (430)
Q Consensus 416 ~~~~a~~~~~ 425 (430)
.++....+.|
T Consensus 121 qvlViiSrpP 130 (167)
T PF02041_consen 121 QVLVIISRPP 130 (167)
T ss_dssp EEEEEEESSS
T ss_pred EEEEEecCCC
Confidence 8877776654
No 31
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=93.99 E-value=0.87 Score=39.49 Aligned_cols=78 Identities=9% Similarity=0.028 Sum_probs=59.5
Q ss_pred CCceEEEEEEecCCCeEEecCCCCeEEEEEEcCcEEEEeC-CcceEEeccccEEEEeCCCeEEEEecCccEEEEEEecCC
Q 014147 346 FEEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAG-FSKEQIVEEGEVLFVPAYMEFTIASQSKELHLYRAGVNS 424 (430)
Q Consensus 346 ~~~F~v~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~~~-~~~~~~l~~Ge~~fIpa~~~~~i~~~~~~~~~~~a~~~~ 424 (430)
---|++....+.+|....+.-..-..-+.|++|+|+|+.- .++...+++|..+.+-....-.+++.+ ++.++-.|.++
T Consensus 32 gmGFS~h~T~i~aGtet~~~YknHlEAvyci~G~Gev~~~~~G~~~~i~pGt~YaLd~hD~H~lra~~-dm~~vCVFnPp 110 (126)
T PF06339_consen 32 GMGFSFHETTIYAGTETHIHYKNHLEAVYCIEGEGEVEDLDTGEVHPIKPGTMYALDKHDRHYLRAKT-DMRLVCVFNPP 110 (126)
T ss_pred CCCEEEEEEEEeCCCeeEEEecCceEEEEEEeceEEEEEccCCcEEEcCCCeEEecCCCccEEEEecC-CEEEEEEcCCC
Confidence 3469999988888866555444567889999999999863 222899999999999988777777743 78777776553
No 32
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=93.82 E-value=0.3 Score=47.93 Aligned_cols=73 Identities=14% Similarity=0.117 Sum_probs=48.4
Q ss_pred EEEEecCCCeEEecCCCCeEEEEEEcCcEEEEeCCcceEEeccc--------cEEEEeCCCeEEEEecCccEEEEEEecC
Q 014147 352 DCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAGFSKEQIVEEG--------EVLFVPAYMEFTIASQSKELHLYRAGVN 423 (430)
Q Consensus 352 ~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~~l~~G--------e~~fIpa~~~~~i~~~~~~~~~~~a~~~ 423 (430)
..+++.+|+.+.....+.=..+++++|+++|..++.....+..- ++++||.+..++|.+ +.+++++++..+
T Consensus 30 ~~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v~~~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a-~~~ae~~~~sap 108 (261)
T PF04962_consen 30 GVLRLEAGESLEFELERRELGVVNLGGKATVTVDGEEFYELGGRESVFDGPPDALYVPRGTKVVIFA-STDAEFAVCSAP 108 (261)
T ss_dssp CCEEEECCHCCCCCCCSEEEEEEEESSSEEEEETTEEEEEE-TTSSGGGS--EEEEE-TT--EEEEE-SSTEEEEEEEEE
T ss_pred EEEEecCCCEEeccCCCcEEEEEEeCCEEEEEeCCceEEEecccccccCCCCcEEEeCCCCeEEEEE-cCCCEEEEEccc
Confidence 34455567666554333456778889999999987226667666 999999999999988 456888877655
Q ss_pred CC
Q 014147 424 SS 425 (430)
Q Consensus 424 ~~ 425 (430)
..
T Consensus 109 a~ 110 (261)
T PF04962_consen 109 AH 110 (261)
T ss_dssp -S
T ss_pred cC
Confidence 44
No 33
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=93.45 E-value=0.1 Score=45.29 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=25.4
Q ss_pred EEccCCCEEEecCCCceeec-cCc----EEEEeecC
Q 014147 268 VKLNRGEALCIGANEPHAYI-RGE----CIECMATS 298 (430)
Q Consensus 268 v~l~pGd~i~ipaG~~HAy~-~G~----~~Eima~S 298 (430)
+.|++||++|||+|++|-.- .|. ++||++..
T Consensus 77 ~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~p~ 112 (127)
T COG0662 77 VEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQSPP 112 (127)
T ss_pred EEecCCCEEEECCCCcEEEEcCCCcceEEEEEecCC
Confidence 48999999999999999854 333 88888766
No 34
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=93.12 E-value=0.58 Score=44.71 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=53.6
Q ss_pred ceEEEEEEecCCCeEEecCCCCeEEEEEEcCcEEEEeCCcc---------eEEeccccEEEEeCCCeEEEEecCccEEEE
Q 014147 348 EFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAGFSK---------EQIVEEGEVLFVPAYMEFTIASQSKELHLY 418 (430)
Q Consensus 348 ~F~v~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~~~~~~---------~~~l~~Ge~~fIpa~~~~~i~~~~~~~~~~ 418 (430)
-|.+.++ .+|++++....+.=.|++++.|+++|...+.. .+.=++-++++||++..+++++. .++++.
T Consensus 30 GF~~~~L--~~Ges~~~~~~~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~-t~~~vA 106 (270)
T COG3718 30 GFRLLRL--AAGESATEETGDRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVTAT-TDLEVA 106 (270)
T ss_pred EEEEEEc--cCCCcccccCCCceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCceEEEEee-cceEEE
Confidence 3666665 46888777666678899999999999865431 23334569999999999999883 466666
Q ss_pred EEecCC
Q 014147 419 RAGVNS 424 (430)
Q Consensus 419 ~a~~~~ 424 (430)
.++.+.
T Consensus 107 vC~AP~ 112 (270)
T COG3718 107 VCSAPG 112 (270)
T ss_pred EEeCCC
Confidence 666554
No 35
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=92.88 E-value=0.37 Score=43.06 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=34.5
Q ss_pred EEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEe
Q 014147 371 SLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIAS 410 (430)
Q Consensus 371 ~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~ 410 (430)
.+-+|++|...|..++. ...-++||.+|||.|..+++..
T Consensus 120 e~d~VlEGrL~V~~~g~-tv~a~aGDvifiPKgssIefst 158 (176)
T COG4766 120 EIDYVLEGRLHVRIDGR-TVIAGAGDVIFIPKGSSIEFST 158 (176)
T ss_pred ceeEEEeeeEEEEEcCC-eEecCCCcEEEecCCCeEEEec
Confidence 56789999999988887 8999999999999998888776
No 36
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=92.60 E-value=0.48 Score=45.34 Aligned_cols=55 Identities=11% Similarity=0.215 Sum_probs=41.8
Q ss_pred CCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEecCccEEEEEEecC
Q 014147 367 VAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQSKELHLYRAGVN 423 (430)
Q Consensus 367 ~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~~~~~~~~~~a~~~ 423 (430)
.+-..+.+|++|+.++..++. ++.+++||++|||.|..++... ....+++....+
T Consensus 173 l~~dEi~YVLEGe~~l~IdG~-t~~l~pGDvlfIPkGs~~hf~t-p~~aRflyV~~P 227 (233)
T PRK15457 173 LNYDEIDMVLEGELHVRHEGE-TMIAKAGDVMFIPKGSSIEFGT-PSSVRFLYVAWP 227 (233)
T ss_pred ccceEEEEEEEeEEEEEECCE-EEEeCCCcEEEECCCCeEEecC-CCCeeEEEEEec
Confidence 456789999999999998887 9999999999999998766533 224444333333
No 37
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=92.33 E-value=1 Score=46.45 Aligned_cols=74 Identities=8% Similarity=0.012 Sum_probs=51.4
Q ss_pred CceEEEEEEecCCCeEEecCCCCeEEEEEEcCcEEEEeC---CcceE--EeccccEEEEeCCCeEEEEecCccEEEEEEe
Q 014147 347 EEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAG---FSKEQ--IVEEGEVLFVPAYMEFTIASQSKELHLYRAG 421 (430)
Q Consensus 347 ~~F~v~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~~~---~~~~~--~l~~Ge~~fIpa~~~~~i~~~~~~~~~~~a~ 421 (430)
..++..++++.+|.....-.+....+++|++|++.+... +. .+ .|++||++++|++.--.+.+.+++.+++..+
T Consensus 65 ~~ls~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~-~~~~~L~~GD~~~fP~g~~H~~~n~~~~~~~l~vf 143 (367)
T TIGR03404 65 TAIAGVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGR-NYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLLVF 143 (367)
T ss_pred ccccceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCc-EEEeEECCCCEEEECCCCeEEEEECCCCeEEEEEe
Confidence 467888888887754333234567899999999998752 33 44 5999999999999875555533345544433
No 38
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=91.99 E-value=0.11 Score=39.50 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=19.4
Q ss_pred eEEccCCCEEEecCCCceeec
Q 014147 267 YVKLNRGEALCIGANEPHAYI 287 (430)
Q Consensus 267 ~v~l~pGd~i~ipaG~~HAy~ 287 (430)
.+.+++||++++|+|+.|++.
T Consensus 38 ~~~l~~Gd~~~i~~~~~H~~~ 58 (71)
T PF07883_consen 38 RVELKPGDAIYIPPGVPHQVR 58 (71)
T ss_dssp EEEEETTEEEEEETTSEEEEE
T ss_pred EeEccCCEEEEECCCCeEEEE
Confidence 569999999999999999975
No 39
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.57 E-value=1.6 Score=43.42 Aligned_cols=55 Identities=13% Similarity=0.227 Sum_probs=42.2
Q ss_pred CCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEecCccEEEEEEecCC
Q 014147 368 AGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQSKELHLYRAGVNS 424 (430)
Q Consensus 368 ~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~~~~~~~~~~a~~~~ 424 (430)
....|+-|++|+|++.-++. .+....||.|.||.=...++.+.+++. ++.+|..-
T Consensus 280 t~s~iy~V~eGsg~~~Ig~~-rf~~~~~D~fvVPsW~~~~~~~gs~da-~LFsfsD~ 334 (351)
T COG3435 280 TDSTIYHVVEGSGYTIIGGE-RFDWSAGDIFVVPSWAWHEHVNGSEDA-VLFSFSDR 334 (351)
T ss_pred cCCEEEEEEecceeEEECCE-EeeccCCCEEEccCcceeecccCCcce-EEEecCCc
Confidence 35689999999999988888 899999999999977667776644444 44455443
No 40
>PLN00212 glutelin; Provisional
Probab=91.57 E-value=1.3 Score=47.28 Aligned_cols=73 Identities=23% Similarity=0.235 Sum_probs=48.8
Q ss_pred eEEeCCCCCce-----EEEEEEecCCCeEEecCCCCeEEEEEEcCcEEEEe--CCc------------------------
Q 014147 339 TTRYLPPFEEF-----EVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSA--GFS------------------------ 387 (430)
Q Consensus 339 ~~~y~~~~~~F-----~v~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~~--~~~------------------------ 387 (430)
+..|+...+.| .+.|+++.++.-......+.+.+++|++|+|.+.. .+.
T Consensus 65 ~E~~~~~~~q~~caGv~~~R~~i~p~gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~~d 144 (493)
T PLN00212 65 TEYFDEKNEQFQCTGVFVIRRVIEPQGLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFRD 144 (493)
T ss_pred eeecCCCChhhcccceEEEEEEecCCcccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhhhccccccccccccccccc
Confidence 44444434444 46777887765433333467999999999998752 111
Q ss_pred ---ceEEeccccEEEEeCCCeEEEEec
Q 014147 388 ---KEQIVEEGEVLFVPAYMEFTIASQ 411 (430)
Q Consensus 388 ---~~~~l~~Ge~~fIpa~~~~~i~~~ 411 (430)
....|++||++.||||....+.+.
T Consensus 145 ~hqkv~~lr~GDViaiPaG~~hw~yN~ 171 (493)
T PLN00212 145 EHQKIHQFRQGDVVALPAGVAHWFYND 171 (493)
T ss_pred ccccceEeccCCEEEECCCCeEEEEeC
Confidence 025899999999999998666663
No 41
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=91.47 E-value=0.75 Score=43.41 Aligned_cols=59 Identities=19% Similarity=0.381 Sum_probs=42.8
Q ss_pred CCCCeEEEEEEcCcEEEEe--CCcc--eEEeccccEEEEeCCCe-EEEEecCccEEEEEEecCC
Q 014147 366 SVAGPSLFLFISGNGTLSA--GFSK--EQIVEEGEVLFVPAYME-FTIASQSKELHLYRAGVNS 424 (430)
Q Consensus 366 ~~~~~~il~v~~G~~~i~~--~~~~--~~~l~~Ge~~fIpa~~~-~~i~~~~~~~~~~~a~~~~ 424 (430)
..+.+.|..|++|++.+.- .++. ...+++||+++||.+-+ +++..+++++.++..|+..
T Consensus 100 ~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~ 163 (209)
T COG2140 100 NADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPAD 163 (209)
T ss_pred CCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCC
Confidence 3455679999999998753 2222 67788899999999998 6666556678666665543
No 42
>PF12852 Cupin_6: Cupin
Probab=90.90 E-value=1.2 Score=40.72 Aligned_cols=52 Identities=21% Similarity=0.364 Sum_probs=39.9
Q ss_pred CCeEEecCCCCeEEEEEEcCcEEEEeCC-cceEEeccccEEEEeCCCeEEEEe
Q 014147 359 AASLVFPSVAGPSLFLFISGNGTLSAGF-SKEQIVEEGEVLFVPAYMEFTIAS 410 (430)
Q Consensus 359 g~~~~~~~~~~~~il~v~~G~~~i~~~~-~~~~~l~~Ge~~fIpa~~~~~i~~ 410 (430)
......+..+...+.+|++|++.+..++ +..+.|+.||.+++|.+....+..
T Consensus 25 ~W~~~~~~~~~~~fh~V~~G~~~l~~~~~~~~~~L~~GDivllp~g~~H~l~~ 77 (186)
T PF12852_consen 25 PWGLRFPGSPGASFHVVLRGSCWLRVPGGGEPIRLEAGDIVLLPRGTAHVLSS 77 (186)
T ss_pred CcEEeccCCCceEEEEEECCeEEEEEcCCCCeEEecCCCEEEEcCCCCeEeCC
Confidence 3444444444688999999999998544 238999999999999998877754
No 43
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=90.74 E-value=3.2 Score=38.87 Aligned_cols=52 Identities=17% Similarity=0.308 Sum_probs=37.4
Q ss_pred CCeEEEEEEcCcEEEEeCCc----ceEEeccccEEEEeCCCeEEEEe-cCccEEEEE
Q 014147 368 AGPSLFLFISGNGTLSAGFS----KEQIVEEGEVLFVPAYMEFTIAS-QSKELHLYR 419 (430)
Q Consensus 368 ~~~~il~v~~G~~~i~~~~~----~~~~l~~Ge~~fIpa~~~~~i~~-~~~~~~~~~ 419 (430)
+.+.++.|++|++.+..++. ....+++|++++||++..=++.+ +++++.++.
T Consensus 96 ~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~fl~ 152 (191)
T PRK04190 96 DRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVFLA 152 (191)
T ss_pred CCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeEECCCCCEEEEE
Confidence 45799999999999864322 15789999999999998733444 345664444
No 44
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=90.39 E-value=1.3 Score=42.09 Aligned_cols=63 Identities=16% Similarity=0.197 Sum_probs=45.9
Q ss_pred ceEEEEEEec-CCCeEEecCCC-CeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEec
Q 014147 348 EFEVDCCVIP-QAASLVFPSVA-GPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQ 411 (430)
Q Consensus 348 ~F~v~~~~~~-~g~~~~~~~~~-~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~~ 411 (430)
-|.=.-+++. .|.+....... --..++|++|+.++..+++ +..|+.|.-+|+|++.+.+++++
T Consensus 60 tF~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G~-th~l~eggyaylPpgs~~~~~N~ 124 (264)
T COG3257 60 TFVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEGK-THALREGGYAYLPPGSGWTLRNA 124 (264)
T ss_pred hhhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcCe-EEEeccCCeEEeCCCCcceEeec
Confidence 3544455563 23232222222 2468999999999999888 99999999999999999989874
No 45
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=89.92 E-value=2.4 Score=39.13 Aligned_cols=65 Identities=20% Similarity=0.287 Sum_probs=45.6
Q ss_pred ceEEeCCCCCceEEEEEEecCCCeEEecCCCCeEEEEEEcCcEEEEe--CCc-ceEEeccccEEEEeCCCe
Q 014147 338 YTTRYLPPFEEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSA--GFS-KEQIVEEGEVLFVPAYME 405 (430)
Q Consensus 338 ~~~~y~~~~~~F~v~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~~--~~~-~~~~l~~Ge~~fIpa~~~ 405 (430)
...+|.. .+|.|..+..+ |+...+-...+...+.+++|+.+|.. +++ ....|+.||.++||+++.
T Consensus 26 n~~l~~~--~d~~VmvvgGp-n~r~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvp 93 (177)
T PRK13264 26 NKQIWQD--SDFIVMVVGGP-NARTDFHYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVP 93 (177)
T ss_pred CeeeEcC--CCEEEEEEccC-CcccccccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCC
Confidence 3445543 47888776543 43333223567899999999999876 431 278999999999999875
No 46
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=89.75 E-value=6 Score=34.04 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=43.5
Q ss_pred eCCCCCceEEEEEEecCCCeEEecCCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCe
Q 014147 342 YLPPFEEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYME 405 (430)
Q Consensus 342 y~~~~~~F~v~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~ 405 (430)
|..+..-+..--+.-.+|..-.. .+......+|+|.+++..++++...+++||++++|++..
T Consensus 38 ~~~~dg~~~~GiWe~TpG~~r~~--y~~~E~chil~G~v~~T~d~Ge~v~~~aGD~~~~~~G~~ 99 (116)
T COG3450 38 YGAPDGQVETGIWECTPGKFRVT--YDEDEFCHILEGRVEVTPDGGEPVEVRAGDSFVFPAGFK 99 (116)
T ss_pred eeCCCCCeeEeEEEecCccceEE--cccceEEEEEeeEEEEECCCCeEEEEcCCCEEEECCCCe
Confidence 33344455554555455643222 234677888999999987766699999999999999986
No 47
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=89.22 E-value=2.7 Score=38.11 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=43.4
Q ss_pred eEEeCCCCCceEEEEEEecCCCeEEecCCCCeEEEEEEcCcEEEEe--CCc-ceEEeccccEEEEeCCCe
Q 014147 339 TTRYLPPFEEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSA--GFS-KEQIVEEGEVLFVPAYME 405 (430)
Q Consensus 339 ~~~y~~~~~~F~v~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~~--~~~-~~~~l~~Ge~~fIpa~~~ 405 (430)
..+|.. .+|.|..+. .+++....-...+..++.+++|+..|.. +++ +.+.|+.||.++||+++.
T Consensus 21 ~~l~~~--~~~~v~~vg-Gpn~R~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvp 87 (159)
T TIGR03037 21 QQIWQD--SEFMVTVVG-GPNARTDFHDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVP 87 (159)
T ss_pred eEeecC--CcEEEEEeC-CCCCCcccccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCC
Confidence 444532 478877653 2233332323457899999999999953 221 178999999999999875
No 48
>PRK13501 transcriptional activator RhaR; Provisional
Probab=88.91 E-value=1.7 Score=42.65 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=37.2
Q ss_pred CCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEe
Q 014147 366 SVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIAS 410 (430)
Q Consensus 366 ~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~ 410 (430)
.++...++++++|++++..++. ...+.+|+.+|||++.--.+..
T Consensus 35 ~H~~~ei~~i~~G~~~~~i~~~-~~~l~~g~~~~I~p~~~H~~~~ 78 (290)
T PRK13501 35 THQFCEIVIVWRGNGLHVLNDH-PYRITCGDVFYIQAADHHSYES 78 (290)
T ss_pred cccceeEEEEecCceEEEECCe-eeeecCCeEEEEcCCCcccccc
Confidence 3567899999999999998888 9999999999999997644443
No 49
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=88.71 E-value=0.32 Score=42.11 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=19.8
Q ss_pred eEEccCCCEEEecCCCceeeccC
Q 014147 267 YVKLNRGEALCIGANEPHAYIRG 289 (430)
Q Consensus 267 ~v~l~pGd~i~ipaG~~HAy~~G 289 (430)
...+++||+|++|||++|.+...
T Consensus 83 ~~~l~~Gd~i~ip~g~~H~~~a~ 105 (131)
T COG1917 83 KKELKAGDVIIIPPGVVHGLKAV 105 (131)
T ss_pred ceEecCCCEEEECCCCeeeeccC
Confidence 34899999999999999998643
No 50
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=88.25 E-value=3.3 Score=33.45 Aligned_cols=67 Identities=18% Similarity=0.077 Sum_probs=46.8
Q ss_pred ceEEEEEEecCCCeEEecCCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEecCccEEEEEE
Q 014147 348 EFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQSKELHLYRA 420 (430)
Q Consensus 348 ~F~v~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~~~~~~~~~~a 420 (430)
...+..+++.+|..+....+.+..-++||+|+..-.. ..+.+|+-+..|++..-...+ .+++.+|+.
T Consensus 23 g~~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d~~-----~~~~~G~~~~~p~g~~h~~~s-~~gc~~~vk 89 (91)
T PF12973_consen 23 GERVSLLRLEPGASLPRHRHPGGEEILVLEGELSDGD-----GRYGAGDWLRLPPGSSHTPRS-DEGCLILVK 89 (91)
T ss_dssp TEEEEEEEE-TTEEEEEEEESS-EEEEEEECEEEETT-----CEEETTEEEEE-TTEEEEEEE-SSCEEEEEE
T ss_pred cCEEEEEEECCCCCcCccCCCCcEEEEEEEEEEEECC-----ccCCCCeEEEeCCCCccccCc-CCCEEEEEE
Confidence 5677778888887665444567888899999887532 357999999999998866665 345666654
No 51
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=88.22 E-value=1.8 Score=42.68 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=43.9
Q ss_pred eEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCe-EEEEec--CccEEEEEEecCCC
Q 014147 370 PSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYME-FTIASQ--SKELHLYRAGVNSS 425 (430)
Q Consensus 370 ~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~-~~i~~~--~~~~~~~~a~~~~~ 425 (430)
=..++.+.|.++|..++. ...+.+.|+++||.+.. +++.+. ..+++++.+..+..
T Consensus 75 E~giV~lgG~~~V~vdG~-~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~sAPA~ 132 (276)
T PRK00924 75 ELGIINIGGAGTVTVDGE-TYELGHRDALYVGKGAKEVVFASADAANPAKFYLNSAPAH 132 (276)
T ss_pred EEEEEEccceEEEEECCE-EEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEEccccC
Confidence 357888999999999888 88899999999999987 777643 23577887776543
No 52
>PRK10579 hypothetical protein; Provisional
Probab=87.28 E-value=4.5 Score=33.41 Aligned_cols=50 Identities=30% Similarity=0.363 Sum_probs=41.0
Q ss_pred CCeEEecCCCCeEEEEEEcCcEEEEeCCcc-eEEeccccEEEEeCCCeEEEEe
Q 014147 359 AASLVFPSVAGPSLFLFISGNGTLSAGFSK-EQIVEEGEVLFVPAYMEFTIAS 410 (430)
Q Consensus 359 g~~~~~~~~~~~~il~v~~G~~~i~~~~~~-~~~l~~Ge~~fIpa~~~~~i~~ 410 (430)
|+ +++.. +.+.+..|++|+.++.-.+.. ..+++.|++|-|||+..+.|+-
T Consensus 33 Ge-y~F~T-~~~E~MeivsG~l~V~Lpg~~ew~~~~aG~sF~VpanssF~l~v 83 (94)
T PRK10579 33 GE-YTFST-AEPEEMTVISGALNVLLPGATDWQVYEAGEVFNVPGHSEFHLQV 83 (94)
T ss_pred eE-EEEcC-CCcEEEEEEeeEEEEECCCCcccEEeCCCCEEEECCCCeEEEEE
Confidence 53 66643 678999999999999865532 7899999999999999988876
No 53
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=87.25 E-value=0.74 Score=38.27 Aligned_cols=29 Identities=21% Similarity=0.153 Sum_probs=19.4
Q ss_pred hcceEEccCCCEEEecCCCceee-ccCcEE
Q 014147 264 LLNYVKLNRGEALCIGANEPHAY-IRGECI 292 (430)
Q Consensus 264 ~Ln~v~l~pGd~i~ipaG~~HAy-~~G~~~ 292 (430)
-..++.-+|||+|++|||+.|+. -.|.++
T Consensus 79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i 108 (114)
T PF02373_consen 79 PVYRFVQKPGEFVFIPPGAYHQVFNLGDNI 108 (114)
T ss_dssp --EEEEEETT-EEEE-TT-EEEEEESSSEE
T ss_pred ccccceECCCCEEEECCCceEEEEeCCceE
Confidence 35678999999999999999994 356633
No 54
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=87.15 E-value=7 Score=34.34 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=47.6
Q ss_pred CCceEEEEEEecCCCeEEecC-CCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEe
Q 014147 346 FEEFEVDCCVIPQAASLVFPS-VAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIAS 410 (430)
Q Consensus 346 ~~~F~v~~~~~~~g~~~~~~~-~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~ 410 (430)
.....+.++.......+.... .+...+.+.++|.+.+..++. ...+.+|+.++++++..+++..
T Consensus 31 lg~~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~~g~-~~~~~pg~~~l~d~~~~~~~~~ 95 (172)
T PF14525_consen 31 LGGLRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQGGR-EVELAPGDVVLLDPGQPYRLEF 95 (172)
T ss_pred eCCEEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEECCE-EEEEcCCeEEEEcCCCCEEEEE
Confidence 345666666654333333333 346889999999999998877 8999999999999998877776
No 55
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=87.06 E-value=4.6 Score=33.39 Aligned_cols=51 Identities=22% Similarity=0.263 Sum_probs=37.6
Q ss_pred CCCeEEecCCCCeEEEEEEcCcEEEEeCCcc-eEEeccccEEEEeCCCeEEEEe
Q 014147 358 QAASLVFPSVAGPSLFLFISGNGTLSAGFSK-EQIVEEGEVLFVPAYMEFTIAS 410 (430)
Q Consensus 358 ~g~~~~~~~~~~~~il~v~~G~~~i~~~~~~-~~~l~~Ge~~fIpa~~~~~i~~ 410 (430)
+|+ +++.. ..+.+..|++|+.++.-.+.. ..+++.|++|-|||+..+.++-
T Consensus 32 pGe-Y~F~T-~~~E~M~vvsG~l~V~lpg~~ew~~~~aGesF~VpanssF~v~v 83 (94)
T PF06865_consen 32 PGE-YTFGT-SAPERMEVVSGELEVKLPGEDEWQTYSAGESFEVPANSSFDVKV 83 (94)
T ss_dssp SEC-EEEEE-SS-EEEEEEESEEEEEETT-SS-EEEETT-EEEE-TTEEEEEEE
T ss_pred eeE-EEEcC-CCCEEEEEEEeEEEEEcCCCcccEEeCCCCeEEECCCCeEEEEE
Confidence 354 56654 578999999999999865543 8899999999999999888887
No 56
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=86.71 E-value=4.6 Score=36.45 Aligned_cols=65 Identities=18% Similarity=0.268 Sum_probs=48.2
Q ss_pred CCceEEEEEEecCCCe--EEecCCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCe--EEEEec
Q 014147 346 FEEFEVDCCVIPQAAS--LVFPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYME--FTIASQ 411 (430)
Q Consensus 346 ~~~F~v~~~~~~~g~~--~~~~~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~--~~i~~~ 411 (430)
...|-+.-..|++|.. ........=..+.|++|++++..+++ ...|++||++=-|||.+ =.+.+.
T Consensus 39 l~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~-e~~lrpGD~~gFpAG~~~aHhliN~ 107 (161)
T COG3837 39 LKRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGG-ETRLRPGDSAGFPAGVGNAHHLINR 107 (161)
T ss_pred hhhcccceEEeCCCCccccccccccCceEEEEEcCceEEEECCe-eEEecCCceeeccCCCcceeEEeec
Confidence 4678888888887732 22222234568999999999998888 89999999999999954 445553
No 57
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=86.67 E-value=0.52 Score=39.55 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=16.3
Q ss_pred ceEEccCCCEEEecCCCceeeccC
Q 014147 266 NYVKLNRGEALCIGANEPHAYIRG 289 (430)
Q Consensus 266 n~v~l~pGd~i~ipaG~~HAy~~G 289 (430)
...+++|||.+++|+|++|++..-
T Consensus 41 ~~~~l~~g~~~li~p~~~H~~~~~ 64 (136)
T PF02311_consen 41 QEYPLKPGDLFLIPPGQPHSYYPD 64 (136)
T ss_dssp EEEEE-TT-EEEE-TTS-EEEEE-
T ss_pred EEEEEECCEEEEecCCccEEEecC
Confidence 357999999999999999998543
No 58
>PRK13502 transcriptional activator RhaR; Provisional
Probab=86.28 E-value=2.5 Score=41.14 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=36.3
Q ss_pred CCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEe
Q 014147 367 VAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIAS 410 (430)
Q Consensus 367 ~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~ 410 (430)
++...+++|++|++++..++. ...+++|+.++||++..-.+..
T Consensus 36 h~~~~l~~v~~G~~~~~i~~~-~~~l~~g~l~li~~~~~H~~~~ 78 (282)
T PRK13502 36 HEFCELVMVWRGNGLHVLNER-PYRITRGDLFYIRAEDKHSYTS 78 (282)
T ss_pred cceEEEEEEecCcEEEEECCE-EEeecCCcEEEECCCCcccccc
Confidence 456789999999999998887 8999999999999997644443
No 59
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=86.02 E-value=0.62 Score=40.51 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=20.3
Q ss_pred eEEccCCCEEEecCCCceeeccC
Q 014147 267 YVKLNRGEALCIGANEPHAYIRG 289 (430)
Q Consensus 267 ~v~l~pGd~i~ipaG~~HAy~~G 289 (430)
.+.|+|||++|+|+|.+|++..-
T Consensus 76 ~~~L~aGD~i~~~~~~~H~~~N~ 98 (125)
T PRK13290 76 VHPIRPGTMYALDKHDRHYLRAG 98 (125)
T ss_pred EEEeCCCeEEEECCCCcEEEEcC
Confidence 35899999999999999998753
No 60
>PLN00212 glutelin; Provisional
Probab=85.94 E-value=5.6 Score=42.53 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=49.8
Q ss_pred ceEEEEEEecCCCeEEe-cCCCCeEEEEEEcCcEEEEe--CC-cc--eEEeccccEEEEeCCCeEEEEecCccEEEEEEe
Q 014147 348 EFEVDCCVIPQAASLVF-PSVAGPSLFLFISGNGTLSA--GF-SK--EQIVEEGEVLFVPAYMEFTIASQSKELHLYRAG 421 (430)
Q Consensus 348 ~F~v~~~~~~~g~~~~~-~~~~~~~il~v~~G~~~i~~--~~-~~--~~~l~~Ge~~fIpa~~~~~i~~~~~~~~~~~a~ 421 (430)
.-++.++.+.+|..+.. .......|++|++|++.+.. .. .. .-.|++||.++||++.-+...++++++.++...
T Consensus 347 ~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A~~egfe~v~F~ 426 (493)
T PLN00212 347 QMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAEREGCQYIAFK 426 (493)
T ss_pred CeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEEEeecCCceEEEEee
Confidence 35667777766643221 11246789999999998863 22 22 457999999999999875445544456554444
Q ss_pred cCCC
Q 014147 422 VNSS 425 (430)
Q Consensus 422 ~~~~ 425 (430)
.+..
T Consensus 427 tna~ 430 (493)
T PLN00212 427 TNAN 430 (493)
T ss_pred cCCC
Confidence 4443
No 61
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=85.25 E-value=1.5 Score=44.55 Aligned_cols=68 Identities=10% Similarity=0.205 Sum_probs=44.6
Q ss_pred cCCCeEEecCCCCeEEEEEEcCcEE-EEeCCcceEEeccccEEEEeCCCeEEEEecCccEEEEEEecCCC
Q 014147 357 PQAASLVFPSVAGPSLFLFISGNGT-LSAGFSKEQIVEEGEVLFVPAYMEFTIASQSKELHLYRAGVNSS 425 (430)
Q Consensus 357 ~~g~~~~~~~~~~~~il~v~~G~~~-i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~~~~~~~~~~a~~~~~ 425 (430)
.+|+....-.+...+|.+|++|+|. ...+++ .+.+++||.|++|...--.-.++++...++..+...|
T Consensus 89 ~pGe~~~~HRht~sAl~~vveG~G~~t~V~g~-~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~lD~P 157 (335)
T TIGR02272 89 LPGEVAPSHRHTQSALRFIVEGKGAFTAVDGE-RTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDGLDIP 157 (335)
T ss_pred CCCCCCCccccccceEEEEEEcCceEEEECCE-EEeeeCCCEEEeCCCeeEecccCCCCcEEEEecCCHH
Confidence 4565443333456789999999995 344566 8999999999999876544444333344555554444
No 62
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=85.15 E-value=6 Score=32.92 Aligned_cols=64 Identities=13% Similarity=0.230 Sum_probs=41.5
Q ss_pred EEEecCCCeEEec-CCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEecCccEEEEE
Q 014147 353 CCVIPQAASLVFP-SVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQSKELHLYR 419 (430)
Q Consensus 353 ~~~~~~g~~~~~~-~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~~~~~~~~~~ 419 (430)
-+++++|..+.++ +..--..+.|++|++++... ...+.+|+.+++..+..+++++.+++.+++.
T Consensus 3 di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~~~---~~~~~~~~~~~l~~g~~i~~~a~~~~a~~ll 67 (104)
T PF05726_consen 3 DIKLEPGASFTLPLPPGHNAFIYVLEGSVEVGGE---EDPLEAGQLVVLEDGDEIELTAGEEGARFLL 67 (104)
T ss_dssp EEEE-TT-EEEEEEETT-EEEEEEEESEEEETTT---TEEEETTEEEEE-SECEEEEEESSSSEEEEE
T ss_pred EEEECCCCEEEeecCCCCEEEEEEEECcEEECCC---cceECCCcEEEECCCceEEEEECCCCcEEEE
Confidence 3566677766654 33456789999999888653 2478999999998666688887534454443
No 63
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=85.07 E-value=1.3 Score=47.04 Aligned_cols=39 Identities=23% Similarity=0.214 Sum_probs=30.4
Q ss_pred ceEEccCCCEEEecCCCceeecc---Cc--EEEEeecC----CcEEEc
Q 014147 266 NYVKLNRGEALCIGANEPHAYIR---GE--CIECMATS----DNVVRA 304 (430)
Q Consensus 266 n~v~l~pGd~i~ipaG~~HAy~~---G~--~~Eima~S----Dnv~R~ 304 (430)
..+.|++||++|+|+|++|.+.. .. ++||+..+ |.++|.
T Consensus 415 ~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~~~~~~~~d~vr~ 462 (468)
T TIGR01479 415 ETLLLTENESTYIPLGVIHRLENPGKIPLELIEVQSGSYLGEDDIIRF 462 (468)
T ss_pred EEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCCCCCCCcEEEe
Confidence 45789999999999999998872 33 77887644 667775
No 64
>PRK13500 transcriptional activator RhaR; Provisional
Probab=85.00 E-value=2.6 Score=42.08 Aligned_cols=43 Identities=19% Similarity=0.188 Sum_probs=36.6
Q ss_pred CCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEe
Q 014147 367 VAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIAS 410 (430)
Q Consensus 367 ~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~ 410 (430)
++.+.|++|++|++++..++. ...+.+|+.++|+++.--.+..
T Consensus 66 H~~~el~~v~~G~g~~~v~~~-~~~l~~Gdl~~I~~~~~H~~~~ 108 (312)
T PRK13500 66 HDFCELVIVWRGNGLHVLNDR-PYRITRGDLFYIHADDKHSYAS 108 (312)
T ss_pred cceEEEEEEEcCeEEEEECCE-EEeecCCeEEEECCCCeecccc
Confidence 456799999999999998888 9999999999999997644443
No 65
>PRK13503 transcriptional activator RhaS; Provisional
Probab=84.99 E-value=2.2 Score=41.21 Aligned_cols=42 Identities=14% Similarity=0.055 Sum_probs=36.1
Q ss_pred CCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEE
Q 014147 366 SVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTI 408 (430)
Q Consensus 366 ~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i 408 (430)
.++.+.|++|++|.+++..++. ...+++|+.++||++..-..
T Consensus 32 ~H~~~ei~~v~~G~~~~~i~~~-~~~l~~g~~~~i~~~~~h~~ 73 (278)
T PRK13503 32 HHDFHEIVIVEHGTGIHVFNGQ-PYTLSGGTVCFVRDHDRHLY 73 (278)
T ss_pred ccCceeEEEEecCceeeEecCC-cccccCCcEEEECCCccchh
Confidence 3567899999999999998877 89999999999999875333
No 66
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=84.97 E-value=1.2 Score=47.35 Aligned_cols=39 Identities=28% Similarity=0.293 Sum_probs=31.3
Q ss_pred eEEccCCCEEEecCCCceeec---cCc--EEEEeecC----CcEEEcC
Q 014147 267 YVKLNRGEALCIGANEPHAYI---RGE--CIECMATS----DNVVRAG 305 (430)
Q Consensus 267 ~v~l~pGd~i~ipaG~~HAy~---~G~--~~Eima~S----Dnv~R~g 305 (430)
.+.|.|||++++|+|++|.|- ... ++||+..+ |..+|..
T Consensus 425 ~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~~g~yl~edDivr~~ 472 (478)
T PRK15460 425 IKLLGENESIYIPLGATHCLENPGKIPLDLIEVRSGSYLEEDDVVRFA 472 (478)
T ss_pred EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCCCCCCCcEEEee
Confidence 578999999999999999765 333 88988776 6777753
No 67
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=84.27 E-value=7.7 Score=29.52 Aligned_cols=55 Identities=13% Similarity=0.099 Sum_probs=40.8
Q ss_pred EecCCCeEEecCCCCeEEEEEEcCcEEEEeCCcc-eEEeccccEEEEeCCCeEEEEe
Q 014147 355 VIPQAASLVFPSVAGPSLFLFISGNGTLSAGFSK-EQIVEEGEVLFVPAYMEFTIAS 410 (430)
Q Consensus 355 ~~~~g~~~~~~~~~~~~il~v~~G~~~i~~~~~~-~~~l~~Ge~~fIpa~~~~~i~~ 410 (430)
++.+|+...+.. .....+.|.+|.+=|+.++.. .+-|..||++-++++..+.+++
T Consensus 3 ~L~~g~~~~lr~-~~~~~l~v~~G~vWlT~~g~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 3 ELAPGETLSLRA-AAGQRLRVESGRVWLTREGDPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EeCCCceEEeEc-CCCcEEEEccccEEEECCCCCCCEEECCCCEEEeCCCCEEEEEe
Confidence 345577666654 344558999999888754332 7899999999999998888876
No 68
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=83.49 E-value=0.82 Score=41.45 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.1
Q ss_pred eEEccCCCEEEecCCCceeecc
Q 014147 267 YVKLNRGEALCIGANEPHAYIR 288 (430)
Q Consensus 267 ~v~l~pGd~i~ipaG~~HAy~~ 288 (430)
.++|++||.++||+|++|+..+
T Consensus 71 ~v~L~eGd~flvP~gvpHsP~r 92 (159)
T TIGR03037 71 DVPIREGDIFLLPPHVPHSPQR 92 (159)
T ss_pred EEEECCCCEEEeCCCCCccccc
Confidence 5799999999999999999864
No 69
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=83.34 E-value=0.94 Score=39.92 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=17.2
Q ss_pred EccCCCEEEecCCCceeeccC
Q 014147 269 KLNRGEALCIGANEPHAYIRG 289 (430)
Q Consensus 269 ~l~pGd~i~ipaG~~HAy~~G 289 (430)
.+++||+++||+|.+|.....
T Consensus 87 ~l~~Gdv~~vP~G~~h~~~n~ 107 (144)
T PF00190_consen 87 RLKAGDVFVVPAGHPHWIIND 107 (144)
T ss_dssp EEETTEEEEE-TT-EEEEEEC
T ss_pred eeecccceeeccceeEEEEcC
Confidence 699999999999999998755
No 70
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=82.87 E-value=6.6 Score=36.48 Aligned_cols=59 Identities=20% Similarity=0.348 Sum_probs=36.6
Q ss_pred CCCeEEEEEEcCcEEEEe--CCc----c--eEEeccccEEEEeCCCe-EEEEecCccEEEEEEecCCCC
Q 014147 367 VAGPSLFLFISGNGTLSA--GFS----K--EQIVEEGEVLFVPAYME-FTIASQSKELHLYRAGVNSSF 426 (430)
Q Consensus 367 ~~~~~il~v~~G~~~i~~--~~~----~--~~~l~~Ge~~fIpa~~~-~~i~~~~~~~~~~~a~~~~~~ 426 (430)
.+.+.++.|++|++.+-- ..+ . -..+++|+.++||++.+ .+|..+++++ ++.+.++.++
T Consensus 81 ~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN~g~~~L-~~~~~~~~~~ 148 (182)
T PF06560_consen 81 LSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHRTINTGDEPL-VFAAWVPRDA 148 (182)
T ss_dssp TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEEEEE-SSS-E-EEEEEEETT-
T ss_pred CCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEEEEECCCCcE-EEEEEEecCC
Confidence 467899999999998742 222 1 46788999999999998 8887755444 5555555553
No 71
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=82.74 E-value=0.76 Score=46.30 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=16.2
Q ss_pred ceEEccCCCEEEecCCCceeeccC
Q 014147 266 NYVKLNRGEALCIGANEPHAYIRG 289 (430)
Q Consensus 266 n~v~l~pGd~i~ipaG~~HAy~~G 289 (430)
-.+.|+|||.+|||.|++|.-..-
T Consensus 176 ~~~~L~pGD~LYlPrG~~H~~~~~ 199 (319)
T PF08007_consen 176 EEVVLEPGDVLYLPRGWWHQAVTT 199 (319)
T ss_dssp EEEEE-TT-EEEE-TT-EEEEEES
T ss_pred EEEEECCCCEEEECCCccCCCCCC
Confidence 367899999999999999985433
No 72
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=82.54 E-value=3 Score=40.56 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=34.6
Q ss_pred CCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCe
Q 014147 367 VAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYME 405 (430)
Q Consensus 367 ~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~ 405 (430)
++.+.|++|++|++++..++. .+.+.+|+.++||++.-
T Consensus 41 H~~~ei~~v~~G~~~~~i~~~-~~~l~~g~l~~i~p~~~ 78 (278)
T PRK10296 41 HDYYEFTLVLTGRYYQEINGK-RVLLERGDFVFIPLGSH 78 (278)
T ss_pred cccEEEEEEEeceEEEEECCE-EEEECCCcEEEeCCCCc
Confidence 467899999999999998888 89999999999999974
No 73
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=81.70 E-value=0.98 Score=41.64 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.8
Q ss_pred eEEccCCCEEEecCCCceeecc
Q 014147 267 YVKLNRGEALCIGANEPHAYIR 288 (430)
Q Consensus 267 ~v~l~pGd~i~ipaG~~HAy~~ 288 (430)
.+.|++||.++||+|++|+...
T Consensus 77 ~v~L~eGd~fllP~gvpHsP~r 98 (177)
T PRK13264 77 DVPIREGEMFLLPPHVPHSPQR 98 (177)
T ss_pred eEEECCCCEEEeCCCCCcCCcc
Confidence 4689999999999999999854
No 74
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=80.71 E-value=1.3 Score=40.69 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.2
Q ss_pred ceEEccCCCEEEecCCCceeecc
Q 014147 266 NYVKLNRGEALCIGANEPHAYIR 288 (430)
Q Consensus 266 n~v~l~pGd~i~ipaG~~HAy~~ 288 (430)
..+.|++||++++|++++|.|-.
T Consensus 146 ~~~~l~~Gd~~~~~~~~~H~~~n 168 (185)
T PRK09943 146 QDYHLVAGQSYAINTGIPHSFSN 168 (185)
T ss_pred EEEEecCCCEEEEcCCCCeeeeC
Confidence 45689999999999999999764
No 75
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=80.62 E-value=11 Score=32.53 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=50.0
Q ss_pred CceEEEEEEecCCCeEEe-cCCCCeEEEEEEcCcEEEEeCCc--ceEEeccccEEEEeCCCe-EEEEecCccEEEEEEec
Q 014147 347 EEFEVDCCVIPQAASLVF-PSVAGPSLFLFISGNGTLSAGFS--KEQIVEEGEVLFVPAYME-FTIASQSKELHLYRAGV 422 (430)
Q Consensus 347 ~~F~v~~~~~~~g~~~~~-~~~~~~~il~v~~G~~~i~~~~~--~~~~l~~Ge~~fIpa~~~-~~i~~~~~~~~~~~a~~ 422 (430)
.--.+.-+++++|.+..- ....--+.+.|++|++.+-.++- ....+.+||-|+||++.. ..+..+++.+..++|..
T Consensus 44 s~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIaRs 123 (142)
T COG4101 44 SGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIARS 123 (142)
T ss_pred ceeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEEcc
Confidence 345566677777743221 11123467789999999876432 157789999999999986 54544455676666654
Q ss_pred C
Q 014147 423 N 423 (430)
Q Consensus 423 ~ 423 (430)
.
T Consensus 124 D 124 (142)
T COG4101 124 D 124 (142)
T ss_pred C
Confidence 3
No 76
>PHA02984 hypothetical protein; Provisional
Probab=80.49 E-value=7.1 Score=38.17 Aligned_cols=59 Identities=14% Similarity=0.252 Sum_probs=41.8
Q ss_pred CeEEEEEEcCcEEEEeCCcc---eEEeccccEEEEeCCCeEEEEecCccE--EEEEEecCCCCc
Q 014147 369 GPSLFLFISGNGTLSAGFSK---EQIVEEGEVLFVPAYMEFTIASQSKEL--HLYRAGVNSSFF 427 (430)
Q Consensus 369 ~~~il~v~~G~~~i~~~~~~---~~~l~~Ge~~fIpa~~~~~i~~~~~~~--~~~~a~~~~~~~ 427 (430)
....++|++|+.+|+...+. +..+++||+|++--++...+....+++ .+++..+..|+|
T Consensus 93 Ey~FvlCl~G~~~I~~~~~~~~is~~I~kGeaf~md~~t~h~i~T~~knl~L~Vi~y~v~~pfi 156 (286)
T PHA02984 93 EYMFVLCLNGKTSIECFNKGSKITNTIKKGEAFTLNLKTKYVTTTKDKNLHLAVITYTSNCPFI 156 (286)
T ss_pred cEEEEEEcCCeEEEEEecCCceeeeEEecCceEEEEccceEEEEeCCCceEEEEEEEEecceEE
Confidence 46788999999999864332 788999999999988885555433444 444555555543
No 77
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=79.85 E-value=12 Score=39.18 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=45.4
Q ss_pred ceEEEEEEecCCC-eEEecCCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEecCccEEEEEE
Q 014147 348 EFEVDCCVIPQAA-SLVFPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQSKELHLYRA 420 (430)
Q Consensus 348 ~F~v~~~~~~~g~-~~~~~~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~~~~~~~~~~a 420 (430)
...+..+..+... ...+.+.++=-++++-+|++.|.+.=+ .+.+++||.++||.|+.+++.-. ++.+.|+.
T Consensus 124 g~ai~~y~~~~sM~~~~f~NaDGD~Li~~q~G~l~l~Te~G-~L~v~pGd~~VIPRG~~~rv~l~-~p~rgyi~ 195 (424)
T PF04209_consen 124 GVAIHVYAANASMDDRAFRNADGDELIFPQQGSLRLETEFG-RLDVRPGDYVVIPRGTRFRVELP-GPARGYII 195 (424)
T ss_dssp EEEEEEEEE-S---SEEEEESSEEEEEEEEES-EEEEETTE-EEEE-TTEEEEE-TT--EEEE-S-SSEEEEEE
T ss_pred CcEEEEEEcCCCCCCcceEcCCCCEEEEEEECCEEEEecCe-eEEEcCCeEEEECCeeEEEEEeC-CCceEEEE
Confidence 3444444443221 223345678888999999999998877 89999999999999999888764 56666654
No 78
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=79.12 E-value=1.3 Score=41.99 Aligned_cols=25 Identities=24% Similarity=0.078 Sum_probs=18.0
Q ss_pred hcceEEccCCCEEEecCCCceeecc
Q 014147 264 LLNYVKLNRGEALCIGANEPHAYIR 288 (430)
Q Consensus 264 ~Ln~v~l~pGd~i~ipaG~~HAy~~ 288 (430)
-.-.+.|+|||++|||+|--|....
T Consensus 207 ~~~~~~l~pGD~LfiP~gWwH~V~~ 231 (251)
T PF13621_consen 207 PPYEVVLEPGDVLFIPPGWWHQVEN 231 (251)
T ss_dssp -EEEEEEETT-EEEE-TT-EEEEEE
T ss_pred ceeEEEECCCeEEEECCCCeEEEEE
Confidence 3567899999999999999999643
No 79
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=79.00 E-value=22 Score=33.97 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=42.2
Q ss_pred CceEEEEEEecCCCeEEecCCC-CeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCe
Q 014147 347 EEFEVDCCVIPQAASLVFPSVA-GPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYME 405 (430)
Q Consensus 347 ~~F~v~~~~~~~g~~~~~~~~~-~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~ 405 (430)
-+|.+..+++.+|.+.-+-... --.-+.|++|++.-+-++. .+.++.||.+++.|-..
T Consensus 180 ~Dmhv~ivsFePGa~ip~aEtHvmEHGlyvLeGk~vYrLn~d-wv~V~aGD~mwm~A~cp 238 (264)
T COG3257 180 FDMHVHIVSFEPGASIPYAETHVMEHGLYVLEGKGVYRLNNN-WVPVEAGDYIWMGAYCP 238 (264)
T ss_pred cceEEEEEEecCCcccchhhhhhhhcceEEEecceEEeecCc-eEEeecccEEEeeccCh
Confidence 4788888888888754331111 1235789999998876666 89999999999998653
No 80
>PHA02890 hypothetical protein; Provisional
Probab=78.92 E-value=8.1 Score=37.51 Aligned_cols=58 Identities=12% Similarity=0.216 Sum_probs=40.3
Q ss_pred CeEEEEEEcCcEEEEeCCcc---eEEeccccEEEEeCCCeEEEEecCccEEEEEEecCCCC
Q 014147 369 GPSLFLFISGNGTLSAGFSK---EQIVEEGEVLFVPAYMEFTIASQSKELHLYRAGVNSSF 426 (430)
Q Consensus 369 ~~~il~v~~G~~~i~~~~~~---~~~l~~Ge~~fIpa~~~~~i~~~~~~~~~~~a~~~~~~ 426 (430)
....++|++|+++|+...+. +..+++||+|++--++...+....-.+.+.+..+..++
T Consensus 92 Ey~FVlCL~Gs~~In~~~~d~~iS~~I~kGeaF~mdv~t~H~i~TKnl~L~Viky~vd~pf 152 (278)
T PHA02890 92 ECFFVACIEGSCKINVNIGDREISDHIHENQGFIMDVGLDHAIDSDNVGLFITKFEVDAHI 152 (278)
T ss_pred cEEEEEEeCCeEEEEEecCCceeeeeeecCceEEEEccceEEEEccceeEEEEEEEecceE
Confidence 46788999999999863321 78899999999998888555443223444444455544
No 81
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=77.30 E-value=6 Score=38.64 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=34.0
Q ss_pred CCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEE
Q 014147 368 AGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFT 407 (430)
Q Consensus 368 ~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~ 407 (430)
.+..+.++++|.+++..++. .+.+++|+.+++|++....
T Consensus 48 ~~~~i~~~~~G~~~~~~~~~-~~~~~~g~~i~i~p~~~h~ 86 (290)
T PRK10572 48 KGYILNLTIRGQGVIFNGGR-AFVCRPGDLLLFPPGEIHH 86 (290)
T ss_pred cceEEEEEEeccEEEecCCe-eEecCCCCEEEECCCCcee
Confidence 46788899999999988777 8999999999999998633
No 82
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=76.98 E-value=7.5 Score=36.92 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=42.5
Q ss_pred ceEEEEEEecCCCeEEecCCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEe
Q 014147 348 EFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIAS 410 (430)
Q Consensus 348 ~F~v~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~ 410 (430)
.-.+.-+++.+|..+..-.+.+..+.+|++|+.. .+ ...+.+||.+.+|++..-...+
T Consensus 126 ~~~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~--de---~g~y~~Gd~i~~p~~~~H~p~a 183 (215)
T TIGR02451 126 NARVRLLYIEAGQSIPQHTHKGFELTLVLHGAFS--DE---TGVYGVGDFEEADGSVQHQPRT 183 (215)
T ss_pred CcEEEEEEECCCCccCCCcCCCcEEEEEEEEEEE--cC---CCccCCCeEEECCCCCCcCccc
Confidence 3466667777887655445678888899999953 32 3468999999999998744444
No 83
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=76.84 E-value=8.3 Score=37.80 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=35.5
Q ss_pred CCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEe
Q 014147 368 AGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIAS 410 (430)
Q Consensus 368 ~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~ 410 (430)
+...++++++|.+.+..++. ...+.+|+.++++++..+.+..
T Consensus 70 ~~~~l~~~~~G~~~~~~~g~-~~~l~~G~~~l~~~~~p~~~~~ 111 (302)
T PRK09685 70 AHFFTVFQLSGHAIIEQDDR-QVQLAAGDITLIDASRPCSIYP 111 (302)
T ss_pred CcEEEEEEecceEEEEECCe-EEEEcCCCEEEEECCCCcEeec
Confidence 45678888999999988777 8999999999999987766654
No 84
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=75.82 E-value=18 Score=38.06 Aligned_cols=56 Identities=21% Similarity=0.285 Sum_probs=44.2
Q ss_pred ecCCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEecCccEEEEEE
Q 014147 364 FPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQSKELHLYRA 420 (430)
Q Consensus 364 ~~~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~~~~~~~~~~a 420 (430)
+.+.++=-++++-+|.+.|.++=+ .+.+++||.++||-|+.+++.-.++..+.|+.
T Consensus 149 f~NaDGD~Livpq~G~l~i~TEfG-~L~v~pgei~VIPRG~~frv~l~~gp~rgyi~ 204 (438)
T PRK05341 149 FYNADGELLIVPQQGRLRLATELG-VLDVEPGEIAVIPRGVKFRVELPDGPARGYVC 204 (438)
T ss_pred eecCCCCEEEEEEeCCEEEEEecc-ceEecCCCEEEEcCccEEEEecCCCCeeEEEE
Confidence 345577788889999999998777 89999999999999998888742335555554
No 85
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=75.57 E-value=1.8 Score=38.66 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=15.8
Q ss_pred ceEEccCCCEEEecCCCceeec
Q 014147 266 NYVKLNRGEALCIGANEPHAYI 287 (430)
Q Consensus 266 n~v~l~pGd~i~ipaG~~HAy~ 287 (430)
..++++.||.+++||+++|+--
T Consensus 75 kdi~I~EGe~fLLP~~vpHsP~ 96 (151)
T PF06052_consen 75 KDIPIREGEMFLLPANVPHSPQ 96 (151)
T ss_dssp EEEEE-TTEEEEE-TT--EEEE
T ss_pred EEEEeCCCcEEecCCCCCCCCc
Confidence 4679999999999999999964
No 86
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=75.25 E-value=2 Score=38.96 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=17.7
Q ss_pred ceEEccCCCEEEecCCCceeeccC
Q 014147 266 NYVKLNRGEALCIGANEPHAYIRG 289 (430)
Q Consensus 266 n~v~l~pGd~i~ipaG~~HAy~~G 289 (430)
-++.+++||.|.||||+.|=.--|
T Consensus 115 iri~~e~GDli~vP~g~~HrF~~~ 138 (157)
T PF03079_consen 115 IRILCEKGDLIVVPAGTYHRFTLG 138 (157)
T ss_dssp EEEEEETTCEEEE-TT--EEEEES
T ss_pred EEEEEcCCCEEecCCCCceeEEcC
Confidence 467999999999999999987544
No 87
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=75.13 E-value=4.6 Score=39.23 Aligned_cols=42 Identities=12% Similarity=0.009 Sum_probs=35.3
Q ss_pred CC-CeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEE
Q 014147 367 VA-GPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIA 409 (430)
Q Consensus 367 ~~-~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~ 409 (430)
++ -+.+++|++|.+++..++. ...+++|+.++||++..-.+.
T Consensus 41 H~~~~~l~~~~~G~~~~~~~~~-~~~l~~g~~~ii~~~~~H~~~ 83 (287)
T TIGR02297 41 HDRYYQLHYLTEGSIALQLDEH-EYSEYAPCFFLTPPSVPHGFV 83 (287)
T ss_pred cccceeEEEEeeCceEEEECCE-EEEecCCeEEEeCCCCccccc
Confidence 44 4799999999999988877 899999999999999754443
No 88
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=73.12 E-value=3 Score=40.00 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=20.4
Q ss_pred cceEEccCCCEEEecCCCceeec
Q 014147 265 LNYVKLNRGEALCIGANEPHAYI 287 (430)
Q Consensus 265 Ln~v~l~pGd~i~ipaG~~HAy~ 287 (430)
-..+.++|||++|||+|.+|.|+
T Consensus 192 G~t~~l~pGDvlfIPkGs~~hf~ 214 (233)
T PRK15457 192 GETMIAKAGDVMFIPKGSSIEFG 214 (233)
T ss_pred CEEEEeCCCcEEEECCCCeEEec
Confidence 46789999999999999998874
No 89
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.95 E-value=15 Score=29.68 Aligned_cols=48 Identities=31% Similarity=0.369 Sum_probs=37.8
Q ss_pred EEecCCCCeEEEEEEcCcEEEEeCCcc-eEEeccccEEEEeCCCeEEEEe
Q 014147 362 LVFPSVAGPSLFLFISGNGTLSAGFSK-EQIVEEGEVLFVPAYMEFTIAS 410 (430)
Q Consensus 362 ~~~~~~~~~~il~v~~G~~~i~~~~~~-~~~l~~Ge~~fIpa~~~~~i~~ 410 (430)
+++.. ..+.+..|+.|+.++.-.+.. ......|+.|-||++..+.++-
T Consensus 35 ytFgT-a~~E~Mtvv~Gal~v~lpgs~dWq~~~~Ge~F~VpgnS~F~lqV 83 (94)
T COG3123 35 YTFGT-AAPEEMTVVSGALTVLLPGSDDWQVYTAGEVFNVPGNSEFDLQV 83 (94)
T ss_pred EEecc-CCceEEEEEeeEEEEEcCCCcccEEecCCceEEcCCCCeEEEEE
Confidence 55543 568999999999998754322 7889999999999998877765
No 90
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=71.99 E-value=19 Score=32.53 Aligned_cols=57 Identities=18% Similarity=0.268 Sum_probs=37.7
Q ss_pred CeEEEEEEcCcEEEEe--CCcc--eEEeccccEEEEeCCCeEEEEe-cCccEEEEEEecCCC
Q 014147 369 GPSLFLFISGNGTLSA--GFSK--EQIVEEGEVLFVPAYMEFTIAS-QSKELHLYRAGVNSS 425 (430)
Q Consensus 369 ~~~il~v~~G~~~i~~--~~~~--~~~l~~Ge~~fIpa~~~~~i~~-~~~~~~~~~a~~~~~ 425 (430)
.-.|-++++|+|.... .++. .+.+.+||-+.||||+.=+++- .+..++++|-|...+
T Consensus 92 deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~~~~ 153 (157)
T PF03079_consen 92 DEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFKDEP 153 (157)
T ss_dssp S-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEESSCG
T ss_pred hheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeecCCC
Confidence 4566778888887643 3232 4789999999999999844443 255789999887765
No 91
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=71.91 E-value=3.2 Score=36.55 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=18.9
Q ss_pred eEEccCCCEEEecCCCceeecc
Q 014147 267 YVKLNRGEALCIGANEPHAYIR 288 (430)
Q Consensus 267 ~v~l~pGd~i~ipaG~~HAy~~ 288 (430)
...+++||+++||+|++|.+..
T Consensus 76 ~~~l~~GD~~~ip~g~~H~~~n 97 (146)
T smart00835 76 DARLREGDVFVVPQGHPHFQVN 97 (146)
T ss_pred EEEecCCCEEEECCCCEEEEEc
Confidence 3489999999999999997753
No 92
>PLN02658 homogentisate 1,2-dioxygenase
Probab=70.84 E-value=27 Score=36.64 Aligned_cols=56 Identities=18% Similarity=0.257 Sum_probs=43.4
Q ss_pred ecCCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEecCccEEEEEE
Q 014147 364 FPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQSKELHLYRA 420 (430)
Q Consensus 364 ~~~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~~~~~~~~~~a 420 (430)
+.+.++=-++++-+|.+.|.++=+ .+.+++||.++||-|+.++|+-.++..+.|+.
T Consensus 142 f~NaDGD~Livpq~G~l~i~TEfG-~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~ 197 (435)
T PLN02658 142 FCNADGDFLIVPQQGRLWIKTELG-KLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVL 197 (435)
T ss_pred eecCCCCEEEEEEeCCEEEEEecc-ceEecCCCEEEecCccEEEEecCCCCeeEEEE
Confidence 335577778888899999998777 89999999999999998888742235555543
No 93
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=70.43 E-value=3.7 Score=38.44 Aligned_cols=21 Identities=10% Similarity=0.352 Sum_probs=18.6
Q ss_pred eEEccCCCEEEecCCCceeec
Q 014147 267 YVKLNRGEALCIGANEPHAYI 287 (430)
Q Consensus 267 ~v~l~pGd~i~ipaG~~HAy~ 287 (430)
.+.++|||.++||+|+.|...
T Consensus 121 ~~~v~pGd~v~IPpg~~H~~i 141 (191)
T PRK04190 121 WIEMEPGTVVYVPPYWAHRSV 141 (191)
T ss_pred EEEECCCCEEEECCCCcEEeE
Confidence 458999999999999999864
No 94
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=69.69 E-value=4.9 Score=38.31 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=22.5
Q ss_pred cceEEccCCCEEEecCCCceeec--cCc--EEEEeecCC
Q 014147 265 LNYVKLNRGEALCIGANEPHAYI--RGE--CIECMATSD 299 (430)
Q Consensus 265 Ln~v~l~pGd~i~ipaG~~HAy~--~G~--~~Eima~SD 299 (430)
=..+.|+|||+|.|++|+-|+.- .|. +=|+..++|
T Consensus 153 G~~l~L~PGESiTL~Pg~yH~Fw~e~g~vLigEVStvND 191 (225)
T PF07385_consen 153 GTQLRLNPGESITLPPGIYHWFWGEGGDVLIGEVSTVND 191 (225)
T ss_dssp T-EEEE-TT-EEEE-TTEEEEEEE-TTSEEEEEEEE---
T ss_pred CceEEeCCCCeEeeCCCCeeeEEecCCCEEEEeeecccC
Confidence 34679999999999999999953 333 669988775
No 95
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=68.71 E-value=31 Score=36.16 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=43.0
Q ss_pred ecCCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEecCccEEEEEE
Q 014147 364 FPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQSKELHLYRA 420 (430)
Q Consensus 364 ~~~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~~~~~~~~~~a 420 (430)
+.+.++=-++++-+|.+.|.++=+ .+.+++||.++||-|+.++++-. ++.+.|+.
T Consensus 143 f~NaDGD~Livpq~G~l~i~TEfG-~L~v~pgei~VIPRG~~frv~l~-gp~rgyi~ 197 (429)
T TIGR01015 143 FYNADGDFLIVPQQGALLITTEFG-RLLVEPNEICVIPRGVRFRVTVL-EPARGYIC 197 (429)
T ss_pred eeccCCCEEEEEEeCcEEEEEecc-ceEecCCCEEEecCccEEEEeeC-CCceEEEE
Confidence 335577788888999999998767 89999999999999998777742 34555543
No 96
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=65.41 E-value=27 Score=31.14 Aligned_cols=60 Identities=17% Similarity=0.287 Sum_probs=43.9
Q ss_pred CCCceEEEEEEecCCCeEEecCCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEE
Q 014147 345 PFEEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTI 408 (430)
Q Consensus 345 ~~~~F~v~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i 408 (430)
+.+...+.|.+-+.. .. ...-.|++.++++|+=.+..++. .+....|+.++.+.+..+..
T Consensus 2 ~ipgl~i~r~~~~~~-~~--~~~y~p~i~~vlQG~K~~~~g~~-~~~Y~~g~~lv~~~~lPv~~ 61 (155)
T PF06719_consen 2 PIPGLSIFRSSRPTP-PM--PCVYEPSICIVLQGSKRVHLGDQ-VFEYDAGQYLVSSVDLPVES 61 (155)
T ss_pred CCCCEEEEEECCCCC-Cc--ceecCCeEEEEEeeeEEEEECCc-eEEecCCcEEEecCCCcEEE
Confidence 345666767653322 11 23457999999999988887777 89999999999999987443
No 97
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=64.58 E-value=12 Score=37.26 Aligned_cols=41 Identities=7% Similarity=0.059 Sum_probs=35.9
Q ss_pred CCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEE
Q 014147 367 VAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTI 408 (430)
Q Consensus 367 ~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i 408 (430)
++...|.++++|.+.+..++. ...+.+|+.++|+++..-.+
T Consensus 44 H~e~Ei~yv~~G~~~~~i~g~-~~~l~~Gd~ili~s~~~H~~ 84 (302)
T PRK10371 44 HGQVEVNVPFDGDVEYLINNE-KVQINQGHITLFWACTPHQL 84 (302)
T ss_pred cccEEEEEecCCcEEEEECCE-EEEEcCCcEEEEecCCcccc
Confidence 567899999999999998888 99999999999999876433
No 98
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=64.37 E-value=8 Score=36.03 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=26.1
Q ss_pred ceEEccCCCEEEecCCCceeeccCc----EEEEeecCC
Q 014147 266 NYVKLNRGEALCIGANEPHAYIRGE----CIECMATSD 299 (430)
Q Consensus 266 n~v~l~pGd~i~ipaG~~HAy~~G~----~~Eima~SD 299 (430)
..+.|+||+.|.||||+=|+.=++. +=|+...+|
T Consensus 153 ~~lkL~PGesitL~Pg~~HsFwae~g~vlvgEvSsvnd 190 (225)
T COG3822 153 SQLKLSPGESITLPPGLYHSFWAEEGGVLVGEVSSVND 190 (225)
T ss_pred eeEEECCCCcEecCCCceeeeeecCCcEEEEEEeeccC
Confidence 4569999999999999999976543 446655554
No 99
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=64.04 E-value=43 Score=34.28 Aligned_cols=55 Identities=22% Similarity=0.285 Sum_probs=42.4
Q ss_pred cCCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEecCccEEEEEE
Q 014147 365 PSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQSKELHLYRA 420 (430)
Q Consensus 365 ~~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~~~~~~~~~~a 420 (430)
.+.++=.++++-.|+..+.+.=+ .+.+++||..+||-++.++++--+....+|.+
T Consensus 142 ~NADge~Livpq~G~l~l~te~G-~l~v~pgeiavIPRG~~frve~~~~~~rgy~~ 196 (427)
T COG3508 142 RNADGELLIVPQQGELRLKTELG-VLEVEPGEIAVIPRGTTFRVELKDGEARGYGC 196 (427)
T ss_pred hcCCCCEEEEeecceEEEEEeec-eEEecCCcEEEeeCCceEEEEecCCceEEEEE
Confidence 34567778888899999987666 89999999999999999887763334455544
No 100
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=63.92 E-value=5 Score=36.49 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=18.9
Q ss_pred ceEEccCCCEEEecCCCceee
Q 014147 266 NYVKLNRGEALCIGANEPHAY 286 (430)
Q Consensus 266 n~v~l~pGd~i~ipaG~~HAy 286 (430)
-+|.|++||.|+||||+=|-.
T Consensus 116 IRi~vekGDlivlPaGiyHRF 136 (179)
T KOG2107|consen 116 IRIFVEKGDLIVLPAGIYHRF 136 (179)
T ss_pred EEEEEecCCEEEecCcceeee
Confidence 378999999999999999975
No 101
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=62.55 E-value=30 Score=33.81 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=34.4
Q ss_pred eEEEEEEecCCCeEEecCCCCeEEEEEEcCcEEEEe--CCcceEEeccccEEEEeCCCeEEE-EecCccEEEEEEe
Q 014147 349 FEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSA--GFSKEQIVEEGEVLFVPAYMEFTI-ASQSKELHLYRAG 421 (430)
Q Consensus 349 F~v~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~~--~~~~~~~l~~Ge~~fIpa~~~~~i-~~~~~~~~~~~a~ 421 (430)
+.=..++++.|..-.+..+.+.-=.+||+|+.+... ... ..+|..|..|+-|+...=.+ .+ +.++.+|+..
T Consensus 171 ~~gll~kLPagf~g~i~~h~~~eraVvI~G~~~~~~~~~~~-~~~L~~GSYf~s~~~~~H~~~~~-e~~~vlyIRt 244 (251)
T PF14499_consen 171 YTGLLLKLPAGFTGRIHTHASNERAVVISGELDYQSYGASN-FGTLDPGSYFGSPGHITHGIFIT-EDECVLYIRT 244 (251)
T ss_dssp E-EEEEE-SSEE--SEEE--S-EEEEEEEEEEEETTEEEET-TEEEEE-TT-EE--E------EE-SS-EEEEEEE
T ss_pred eeeEEEEcCCCCcCceeccCCceEEEEEEeEEEEeecccCC-CccccCCcccccCCccccccccc-CCCEEEEEEE
Confidence 334455666553333334455556788999999832 122 68999999999998765222 44 3456666544
No 102
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=60.80 E-value=6.9 Score=38.21 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=20.0
Q ss_pred eEEccCCCEEEecCCCceeecc
Q 014147 267 YVKLNRGEALCIGANEPHAYIR 288 (430)
Q Consensus 267 ~v~l~pGd~i~ipaG~~HAy~~ 288 (430)
.+.++|||.+++|+|++|.|..
T Consensus 68 ~~~~~~g~~i~i~p~~~h~~~~ 89 (290)
T PRK10572 68 AFVCRPGDLLLFPPGEIHHYGR 89 (290)
T ss_pred eEecCCCCEEEECCCCceeecc
Confidence 5689999999999999999864
No 103
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=60.44 E-value=5.7 Score=31.03 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=14.0
Q ss_pred eEEccCCCEEEecCCCc
Q 014147 267 YVKLNRGEALCIGANEP 283 (430)
Q Consensus 267 ~v~l~pGd~i~ipaG~~ 283 (430)
.+.++|||++++|+|..
T Consensus 45 ~~~~~aGD~~~~p~G~~ 61 (74)
T PF05899_consen 45 TVTFKAGDAFFLPKGWT 61 (74)
T ss_dssp EEEEETTEEEEE-TTEE
T ss_pred EEEEcCCcEEEECCCCE
Confidence 46899999999999984
No 104
>PF12852 Cupin_6: Cupin
Probab=60.43 E-value=7.8 Score=35.39 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=21.9
Q ss_pred ceEEccCCCEEEecCCCceeeccCcE
Q 014147 266 NYVKLNRGEALCIGANEPHAYIRGEC 291 (430)
Q Consensus 266 n~v~l~pGd~i~ipaG~~HAy~~G~~ 291 (430)
..+.|++||.+++|.|+.|...++..
T Consensus 55 ~~~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 55 EPIRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred CeEEecCCCEEEEcCCCCeEeCCCCC
Confidence 34799999999999999999865543
No 105
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=60.18 E-value=6.3 Score=34.80 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=37.7
Q ss_pred eEEccCCCEEEecCCCceeeccCcEEEEeecCCcEEEcC---------CCCCccCHHHHHhccccCC
Q 014147 267 YVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAG---------LTSKHRDIQTLFSMLNRRQ 324 (430)
Q Consensus 267 ~v~l~pGd~i~ipaG~~HAy~~G~~~Eima~SDnv~R~g---------ltpk~~die~ll~~l~~~~ 324 (430)
.++++.||++.||||+=|.-++ .+.|.++-++ -|++.-|.+++.+-+.--+
T Consensus 86 el~v~~GDvlliPAGvGH~rl~-------sS~DF~VvGaYp~G~q~diqtg~~t~~aear~~I~~vp 145 (163)
T COG4297 86 ELEVGEGDVLLIPAGVGHCRLH-------SSADFQVVGAYPPGQQADIQTGAPTDLAEARARIKSVP 145 (163)
T ss_pred eeeecCCCEEEEecCccccccc-------CCCCeEEEcccCCcccccccCCCCccHHHHHHHHHcCC
Confidence 4589999999999999998754 3557665432 2677888888887776443
No 106
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=60.08 E-value=30 Score=32.01 Aligned_cols=43 Identities=14% Similarity=0.296 Sum_probs=31.4
Q ss_pred CCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEe
Q 014147 367 VAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIAS 410 (430)
Q Consensus 367 ~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~ 410 (430)
.....+++|++|+..+..+++ ...|.+||++++-....+.+.+
T Consensus 133 ~~~~~l~~~~~G~~~i~~~~~-~~~L~~~d~l~~~~~~~~~l~~ 175 (184)
T PF05962_consen 133 AASTVLVYVLEGAWSITEGGN-CISLSAGDLLLIDDEEDLPLTG 175 (184)
T ss_dssp --SEEEEEESSS-EEECCCEE-EEEE-TT-EEEEESEECEEEEE
T ss_pred CCCEEEEEEeeCcEEEecCCC-ceEcCCCCEEEEeCCCceEecC
Confidence 356788999999988866544 7999999999999866677777
No 107
>PRK13502 transcriptional activator RhaR; Provisional
Probab=57.92 E-value=7.7 Score=37.66 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=20.3
Q ss_pred ceEEccCCCEEEecCCCceeecc
Q 014147 266 NYVKLNRGEALCIGANEPHAYIR 288 (430)
Q Consensus 266 n~v~l~pGd~i~ipaG~~HAy~~ 288 (430)
+.+.++|||.++||+|++|.+..
T Consensus 56 ~~~~l~~g~l~li~~~~~H~~~~ 78 (282)
T PRK13502 56 RPYRITRGDLFYIRAEDKHSYTS 78 (282)
T ss_pred EEEeecCCcEEEECCCCcccccc
Confidence 34789999999999999999865
No 108
>PRK13501 transcriptional activator RhaR; Provisional
Probab=57.89 E-value=6.8 Score=38.37 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.0
Q ss_pred ceEEccCCCEEEecCCCceeecc
Q 014147 266 NYVKLNRGEALCIGANEPHAYIR 288 (430)
Q Consensus 266 n~v~l~pGd~i~ipaG~~HAy~~ 288 (430)
+.+.+++||.++||+|.+|++-.
T Consensus 56 ~~~~l~~g~~~~I~p~~~H~~~~ 78 (290)
T PRK13501 56 HPYRITCGDVFYIQAADHHSYES 78 (290)
T ss_pred eeeeecCCeEEEEcCCCcccccc
Confidence 34689999999999999999764
No 109
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=56.51 E-value=7.2 Score=35.49 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=36.3
Q ss_pred eEEEEEEcCcEEEEeC--Ccc--eEEeccccEEEEeCCCeEEEEec-CccEEEEEEecCCCC
Q 014147 370 PSLFLFISGNGTLSAG--FSK--EQIVEEGEVLFVPAYMEFTIASQ-SKELHLYRAGVNSSF 426 (430)
Q Consensus 370 ~~il~v~~G~~~i~~~--~~~--~~~l~~Ge~~fIpa~~~~~i~~~-~~~~~~~~a~~~~~~ 426 (430)
-.|=+|++|+|-.... +++ .+-+.+||-++||||.--+++.. +.-+.+.|-|++-|-
T Consensus 94 eeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~n~vkamRlF~~~p~ 155 (179)
T KOG2107|consen 94 EEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPSNYVKAMRLFVGEPK 155 (179)
T ss_pred hheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCchHHHHHHHHhcCCcc
Confidence 4577888888876532 222 67799999999999987444432 223344555554443
No 110
>PRK13500 transcriptional activator RhaR; Provisional
Probab=56.33 E-value=7.7 Score=38.66 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=19.9
Q ss_pred eEEccCCCEEEecCCCceeecc
Q 014147 267 YVKLNRGEALCIGANEPHAYIR 288 (430)
Q Consensus 267 ~v~l~pGd~i~ipaG~~HAy~~ 288 (430)
..++++||.++|++|++|.+..
T Consensus 87 ~~~l~~Gdl~~I~~~~~H~~~~ 108 (312)
T PRK13500 87 PYRITRGDLFYIHADDKHSYAS 108 (312)
T ss_pred EEeecCCeEEEECCCCeecccc
Confidence 4689999999999999999875
No 111
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=56.17 E-value=35 Score=32.91 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=40.0
Q ss_pred EEEEEcCcEEEEeCCcceEEeccccEEEEeCCCe-EEEEecC--ccEEEEEEecC
Q 014147 372 LFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYME-FTIASQS--KELHLYRAGVN 423 (430)
Q Consensus 372 il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~-~~i~~~~--~~~~~~~a~~~ 423 (430)
.+|.+.|.|+|..+++ .+.|...|+++|..|.. +++.+.+ .+.+.|...++
T Consensus 79 giINIG~~G~i~v~g~-~y~l~~rd~LYvg~G~~dv~F~s~d~~~pAkFY~~sap 132 (278)
T COG3717 79 GIINIGGPGTITVDGQ-EYELGHRDALYVGMGAKDVTFSSIDGAAPAKFYYVSAP 132 (278)
T ss_pred eEEeeCCCceEEECCE-EEEeccccEEEEecCccceEEeccCCCCcceEEEeecc
Confidence 4567889999999888 99999999999999977 8888742 34556655443
No 112
>COG1741 Pirin-related protein [General function prediction only]
Probab=55.33 E-value=1.7e+02 Score=29.06 Aligned_cols=116 Identities=14% Similarity=0.173 Sum_probs=60.2
Q ss_pred hcceEEccCCCEEEecCCCceeeccCcEEEEeec--CCcEEEc---CCCC--CccCHHHHHhccccCCCCccc---cccc
Q 014147 264 LLNYVKLNRGEALCIGANEPHAYIRGECIECMAT--SDNVVRA---GLTS--KHRDIQTLFSMLNRRQGFPQI---LKGI 333 (430)
Q Consensus 264 ~Ln~v~l~pGd~i~ipaG~~HAy~~G~~~Eima~--SDnv~R~---gltp--k~~die~ll~~l~~~~~~~~~---~~~~ 333 (430)
+=|.-.++|||+-.+-||. |++-+=|.. ++..++. .+.+ +..+++-..+.+.|...-|.. +...
T Consensus 82 ~Gn~~~i~pGdvqwMTAG~------GI~HSE~~~~~~~~~l~~~QlWv~lP~~~k~~~P~yq~~~~~~~~p~~~~g~~~r 155 (276)
T COG1741 82 LGNKGVIRPGDVQWMTAGS------GIVHSEMNPPSTGKPLHGLQLWVNLPAADKMIAPRYQHLAFPDEIPRVELGLTAR 155 (276)
T ss_pred CCceeeecccceeEEcCCC------ceeecccCCccCCCccceeeeecCCchhhccCCcccccccCcccCceeecceEEE
Confidence 5577789999999997753 444444432 4444542 2222 334444333444433322221 1111
Q ss_pred ccCCceEEeCCCCCceEEEEEEe--cCCCeEEecCCCCeEEEEEEcCcEEEEeC
Q 014147 334 SLNPYTTRYLPPFEEFEVDCCVI--PQAASLVFPSVAGPSLFLFISGNGTLSAG 385 (430)
Q Consensus 334 ~~~~~~~~y~~~~~~F~v~~~~~--~~g~~~~~~~~~~~~il~v~~G~~~i~~~ 385 (430)
-+.+.......|+..|.+..+++ .+|..+.+++...-..+.+++|..+|++.
T Consensus 156 vi~G~~~g~~~pv~~~~~~~~dl~l~~g~~~~l~~~~~~~~l~v~~G~l~v~g~ 209 (276)
T COG1741 156 VIAGRDGGLSSPVRQDSLHYVDLRLEAGARLQLPPAGRRAYLYVIEGTLEVNGQ 209 (276)
T ss_pred EeccccCCcccccccceeEEEEEEeCCCceEecCCCCceEEEEEEEeEEEEccc
Confidence 01111111233445555655544 56677776533456788999999988753
No 113
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=54.79 E-value=55 Score=30.10 Aligned_cols=59 Identities=20% Similarity=0.323 Sum_probs=39.0
Q ss_pred CeEEEEEEcCcEEEE--eCCcc--eEEeccccEEEEeCCCe--EEEEecCccEEEEEEecCCCCcc
Q 014147 369 GPSLFLFISGNGTLS--AGFSK--EQIVEEGEVLFVPAYME--FTIASQSKELHLYRAGVNSSFFQ 428 (430)
Q Consensus 369 ~~~il~v~~G~~~i~--~~~~~--~~~l~~Ge~~fIpa~~~--~~i~~~~~~~~~~~a~~~~~~~~ 428 (430)
.+.+.+++.|+|-.. ...+. .+.+.+||-+.||+|+. ++++. +-.+..+|-|...+-+.
T Consensus 95 d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~-~~~f~AvRlF~~~~gWV 159 (181)
T COG1791 95 DDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTE-SPNFKAVRLFTEPEGWV 159 (181)
T ss_pred CceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccC-CCcEEEEEEeeCCCCce
Confidence 345555555555432 22211 56788999999999997 55554 55788888888776544
No 114
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=52.92 E-value=7 Score=39.98 Aligned_cols=29 Identities=34% Similarity=0.472 Sum_probs=22.4
Q ss_pred eEEccCCCEEEecCCCceeeccCcE-EEEeecC
Q 014147 267 YVKLNRGEALCIGANEPHAYIRGEC-IECMATS 298 (430)
Q Consensus 267 ~v~l~pGd~i~ipaG~~HAy~~G~~-~Eima~S 298 (430)
-..++|||.+|||+|.+|- |.. =+||.-|
T Consensus 180 d~vlepGDiLYiPp~~~H~---gvae~dc~tyS 209 (383)
T COG2850 180 DEVLEPGDILYIPPGFPHY---GVAEDDCMTYS 209 (383)
T ss_pred hhhcCCCceeecCCCCCcC---Cccccccccee
Confidence 3478999999999999996 552 3676555
No 115
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=52.86 E-value=6.8 Score=43.95 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCCCceehhhhhcceEEccCCCEEEecCCCceee
Q 014147 243 EMLVLRLEGQYPDDAGVLAAFLLNYVKLNRGEALCIGANEPHAY 286 (430)
Q Consensus 243 ~~~~~~l~~~yP~D~G~~~~~~Ln~v~l~pGd~i~ipaG~~HAy 286 (430)
..+-.||.+-|.=..=- +.=..|||||||||-||-.
T Consensus 784 ~~lr~RLkeEyGVe~Wt--------fvQ~LGdAVfIPAGaPHQV 819 (889)
T KOG1356|consen 784 RYLRRRLKEEYGVEPWT--------FVQFLGDAVFIPAGAPHQV 819 (889)
T ss_pred HHHHHHHHHHhCCCccc--------hhhcccceEEecCCCcHHh
Confidence 34556888888522111 1235799999999999973
No 116
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=50.31 E-value=12 Score=36.29 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=18.7
Q ss_pred ceEEccCCCEEEecCCCceee
Q 014147 266 NYVKLNRGEALCIGANEPHAY 286 (430)
Q Consensus 266 n~v~l~pGd~i~ipaG~~HAy 286 (430)
..+.++|||.++||+|++|+.
T Consensus 61 ~~~~l~~g~l~~i~p~~~H~~ 81 (278)
T PRK10296 61 KRVLLERGDFVFIPLGSHHQS 81 (278)
T ss_pred EEEEECCCcEEEeCCCCccce
Confidence 356999999999999999975
No 117
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=50.31 E-value=13 Score=32.04 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=15.6
Q ss_pred ceEEccCCCEEEecCCCc
Q 014147 266 NYVKLNRGEALCIGANEP 283 (430)
Q Consensus 266 n~v~l~pGd~i~ipaG~~ 283 (430)
+.+.+++||++|+|+|..
T Consensus 82 e~v~~~aGD~~~~~~G~~ 99 (116)
T COG3450 82 EPVEVRAGDSFVFPAGFK 99 (116)
T ss_pred eEEEEcCCCEEEECCCCe
Confidence 346899999999999985
No 118
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=49.69 E-value=12 Score=34.79 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=16.5
Q ss_pred ceEEccCCCEEEecCCCceeec
Q 014147 266 NYVKLNRGEALCIGANEPHAYI 287 (430)
Q Consensus 266 n~v~l~pGd~i~ipaG~~HAy~ 287 (430)
-.++++|||.++||+|..|..+
T Consensus 110 ~~v~~~~G~~v~IPp~yaH~tI 131 (182)
T PF06560_consen 110 IAVEAKPGDVVYIPPGYAHRTI 131 (182)
T ss_dssp EEEEE-TTEEEEE-TT-EEEEE
T ss_pred EEEEeCCCCEEEECCCceEEEE
Confidence 3579999999999999999964
No 119
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=49.44 E-value=11 Score=36.46 Aligned_cols=22 Identities=9% Similarity=0.088 Sum_probs=19.6
Q ss_pred ceEEccCCCEEEecCCCceeec
Q 014147 266 NYVKLNRGEALCIGANEPHAYI 287 (430)
Q Consensus 266 n~v~l~pGd~i~ipaG~~HAy~ 287 (430)
..+.+++||.+++|+|++|.+.
T Consensus 62 ~~~~l~~g~~~ii~~~~~H~~~ 83 (287)
T TIGR02297 62 HEYSEYAPCFFLTPPSVPHGFV 83 (287)
T ss_pred EEEEecCCeEEEeCCCCccccc
Confidence 3568999999999999999985
No 120
>PRK13503 transcriptional activator RhaS; Provisional
Probab=49.15 E-value=8.8 Score=37.03 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=18.5
Q ss_pred EEccCCCEEEecCCCceeecc
Q 014147 268 VKLNRGEALCIGANEPHAYIR 288 (430)
Q Consensus 268 v~l~pGd~i~ipaG~~HAy~~ 288 (430)
+++++||+++||+|++|.+-.
T Consensus 55 ~~l~~g~~~~i~~~~~h~~~~ 75 (278)
T PRK13503 55 YTLSGGTVCFVRDHDRHLYEH 75 (278)
T ss_pred ccccCCcEEEECCCccchhhh
Confidence 489999999999999998643
No 121
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=47.14 E-value=1.6e+02 Score=26.56 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=33.1
Q ss_pred CceEEEEEEecCCCeEEecCCCCeEEEEEEcCcEEEEe--CCc-ceEEeccccEEEEeCCCe
Q 014147 347 EEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSA--GFS-KEQIVEEGEVLFVPAYME 405 (430)
Q Consensus 347 ~~F~v~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~~--~~~-~~~~l~~Ge~~fIpa~~~ 405 (430)
.+|.|..+--+ .+...+--..+...+.-++|+..+.. +++ ..+.++.||++++|+++.
T Consensus 32 ~~f~VmvVGGP-N~R~DyHine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vp 92 (151)
T PF06052_consen 32 DDFIVMVVGGP-NQRTDYHINETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVP 92 (151)
T ss_dssp SSEEEEEEESS-B--SSEEE-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--
T ss_pred CCeEEEEEcCC-CCCCccccCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCC
Confidence 36777766422 22222222357889999999988753 222 278999999999999864
No 122
>PRK08158 type III secretion system protein SpaO; Validated
Probab=44.73 E-value=54 Score=32.95 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=26.8
Q ss_pred EccCCCEEEecCCCceeeccCc-EEEEeecCC
Q 014147 269 KLNRGEALCIGANEPHAYIRGE-CIECMATSD 299 (430)
Q Consensus 269 ~l~pGd~i~ipaG~~HAy~~G~-~~Eima~SD 299 (430)
.+++||.++|+..+.|.++.|. +..++....
T Consensus 168 ~l~~GDVLlI~~~~~~l~v~~r~i~~f~~~~~ 199 (303)
T PRK08158 168 RIGIGDVLLISTSRAEVYCYAKKIGHFNRVEE 199 (303)
T ss_pred ccccCcEEEEcccccEEEEcceEEEEEEEcCC
Confidence 7899999999999999999999 777775433
No 123
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=44.56 E-value=14 Score=33.22 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=13.9
Q ss_pred ceEEccCCCEEEecCCCceee
Q 014147 266 NYVKLNRGEALCIGANEPHAY 286 (430)
Q Consensus 266 n~v~l~pGd~i~ipaG~~HAy 286 (430)
+.+..+|||+||||.|+-=.+
T Consensus 113 ~~~~A~~GDvi~iPkGs~I~f 133 (152)
T PF06249_consen 113 QTVTAKPGDVIFIPKGSTITF 133 (152)
T ss_dssp EEEEEETT-EEEE-TT-EEEE
T ss_pred EEEEEcCCcEEEECCCCEEEE
Confidence 456899999999999974333
No 124
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=41.81 E-value=1.3e+02 Score=26.18 Aligned_cols=47 Identities=21% Similarity=0.298 Sum_probs=26.3
Q ss_pred CCeEEEEEEcCcEEEEeCCc---ceEEeccc-cEEEEeCCCeEEEEecCcc
Q 014147 368 AGPSLFLFISGNGTLSAGFS---KEQIVEEG-EVLFVPAYMEFTIASQSKE 414 (430)
Q Consensus 368 ~~~~il~v~~G~~~i~~~~~---~~~~l~~G-e~~fIpa~~~~~i~~~~~~ 414 (430)
..-..++|++|+.+|....+ .++.|..- ..++||++.--.+.+-+.+
T Consensus 53 ~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~~~L~Ippg~w~~~~~~s~~ 103 (131)
T PF05523_consen 53 KTTQWFIVLSGSFKVVLDDGREEEEFILDEPNKGLYIPPGVWHGIKNFSED 103 (131)
T ss_dssp S--EEEEEEES-EEEEEE-SS-EEEEEE--TTEEEEE-TT-EEEEE---TT
T ss_pred cccEEEEEEeCEEEEEEecCCCcEEEEECCCCeEEEECCchhhHhhccCCC
Confidence 45789999999999974322 15666655 5899999987666654334
No 125
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=41.44 E-value=28 Score=35.67 Aligned_cols=36 Identities=36% Similarity=0.389 Sum_probs=27.0
Q ss_pred ceEEccCCCEEEecCCCceeeccCcEEEEeecCC--cEEEcCCCCC
Q 014147 266 NYVKLNRGEALCIGANEPHAYIRGECIECMATSD--NVVRAGLTSK 309 (430)
Q Consensus 266 n~v~l~pGd~i~ipaG~~HAy~~G~~~Eima~SD--nv~R~gltpk 309 (430)
..+.+++|+++||||...= ++-++|| .+||++-..|
T Consensus 372 ~~~~v~rG~V~fI~a~~~i--------~~~~~sd~~~~yrAf~~~r 409 (411)
T KOG2757|consen 372 SKILVNRGDVLFIPANHPI--------HLSSSSDPFLGYRAFSNSR 409 (411)
T ss_pred CceeeccCcEEEEcCCCCc--------eeeccCcceeeeecccccc
Confidence 4568899999999997653 7777888 4688875544
No 126
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=41.22 E-value=19 Score=35.68 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.1
Q ss_pred eEEccCCCEEEecCCCceeecc
Q 014147 267 YVKLNRGEALCIGANEPHAYIR 288 (430)
Q Consensus 267 ~v~l~pGd~i~ipaG~~HAy~~ 288 (430)
.+.++|||.++|++|++|.+..
T Consensus 65 ~~~l~~Gd~ili~s~~~H~~~~ 86 (302)
T PRK10371 65 KVQINQGHITLFWACTPHQLTD 86 (302)
T ss_pred EEEEcCCcEEEEecCCcccccc
Confidence 4589999999999999998654
No 127
>PRK01712 carbon storage regulator; Provisional
Probab=38.25 E-value=58 Score=25.04 Aligned_cols=46 Identities=22% Similarity=0.391 Sum_probs=33.7
Q ss_pred eEEccCCCEEEecCCCceeeccCcEEEEeecCCcEEEcCC-CCCc--cCHHHHHhcc
Q 014147 267 YVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAGL-TSKH--RDIQTLFSML 320 (430)
Q Consensus 267 ~v~l~pGd~i~ipaG~~HAy~~G~~~Eima~SDnv~R~gl-tpk~--~die~ll~~l 320 (430)
.+.-++||++.|. .+..+-+...+++.+|.|. .||. ++-+++..-+
T Consensus 3 vLtRk~gE~I~Ig--------d~I~I~V~~i~~~~VrlGI~AP~~v~I~R~Ei~~~i 51 (64)
T PRK01712 3 ILTRKVGESLMIG--------DDIEVTVLGVKGNQVRIGINAPKEVSVHREEIYQRI 51 (64)
T ss_pred eEEccCCCEEEeC--------CCEEEEEEEEeCCEEEEEEECCCCceEeHHHHHHHH
Confidence 3567899999994 3337777788899999996 6887 4566666544
No 128
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=36.07 E-value=33 Score=27.55 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=19.6
Q ss_pred EccCCCEEEecCCCceeeccCc-EEE
Q 014147 269 KLNRGEALCIGANEPHAYIRGE-CIE 293 (430)
Q Consensus 269 ~l~pGd~i~ipaG~~HAy~~G~-~~E 293 (430)
...+||.++.|+|+.|...+.. |+-
T Consensus 61 ~~~~G~~~~~p~g~~h~~~s~~gc~~ 86 (91)
T PF12973_consen 61 RYGAGDWLRLPPGSSHTPRSDEGCLI 86 (91)
T ss_dssp EEETTEEEEE-TTEEEEEEESSCEEE
T ss_pred cCCCCeEEEeCCCCccccCcCCCEEE
Confidence 4599999999999999988655 443
No 129
>PF05941 Chordopox_A20R: Chordopoxvirus A20R protein; InterPro: IPR010267 This family consists of several Chordopoxvirus A20R proteins. The A20R protein is required for DNA replication, is associated with the processive form of the viral DNA polymerase, and directly interacts with the viral proteins encoded by the D4R, D5R, and H5R open reading frames. A20R may contribute to the assembly or stability of the multiprotein DNA replication complex [].
Probab=35.61 E-value=31 Score=34.89 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=27.4
Q ss_pred ceEEccCCCEEEecC--CCceeeccCcEEEEe
Q 014147 266 NYVKLNRGEALCIGA--NEPHAYIRGECIECM 295 (430)
Q Consensus 266 n~v~l~pGd~i~ipa--G~~HAy~~G~~~Eim 295 (430)
+.+.|+||+.+|+|- |+.|.|..|..+|+-
T Consensus 67 ~~f~L~~G~Y~Flp~~FG~~~iY~~Gsm~elg 98 (334)
T PF05941_consen 67 KPFALEPGEYIFLPMCFGNVFIYSKGSMMELG 98 (334)
T ss_pred CcceecCceEEEEhhhCCcEEEEECCcEEEec
Confidence 566999999999996 999999999999985
No 130
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=33.80 E-value=1.2e+02 Score=28.82 Aligned_cols=58 Identities=21% Similarity=0.425 Sum_probs=36.1
Q ss_pred CCeEEEEEEcCcEEEEe--CCc-ceEEeccccEEEEeCCC-----------eEEEEec--CccEEEEEEecCCC
Q 014147 368 AGPSLFLFISGNGTLSA--GFS-KEQIVEEGEVLFVPAYM-----------EFTIASQ--SKELHLYRAGVNSS 425 (430)
Q Consensus 368 ~~~~il~v~~G~~~i~~--~~~-~~~~l~~Ge~~fIpa~~-----------~~~i~~~--~~~~~~~~a~~~~~ 425 (430)
.++.++.-.+|+..+.. .++ ..+.+++||++++||.. ++.++-. ..++..+|-||...
T Consensus 52 egeE~FyQ~KGdMvLKVie~g~~rDivI~qGe~flLParVpHSPqRFantvGlVVEr~R~~tE~D~iR~yvg~~ 125 (279)
T KOG3995|consen 52 EGEEVFYQLKGDMVLKVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFANTVGLVVERRRLETELDGLRYYVGDT 125 (279)
T ss_pred CcchhheeecCceEEeeeccCcceeeEEecCcEEEeccCCCCChhhhccceeEEEEeccCCCccceEEEEeccc
Confidence 46667777777766542 111 16889999999999964 2233321 23456677776654
No 131
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=33.01 E-value=36 Score=32.26 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=19.2
Q ss_pred ceEEccCCCEEEecCCCceeec
Q 014147 266 NYVKLNRGEALCIGANEPHAYI 287 (430)
Q Consensus 266 n~v~l~pGd~i~ipaG~~HAy~ 287 (430)
..+.+++||.+|||+|--|...
T Consensus 126 ~v~~~~~Gd~iyVPp~~gH~t~ 147 (209)
T COG2140 126 RVIAVRAGDVIYVPPGYGHYTI 147 (209)
T ss_pred EEEEecCCcEEEeCCCcceEee
Confidence 4568999999999999999954
No 132
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=31.09 E-value=1.4e+02 Score=24.49 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=29.6
Q ss_pred eEEEEEEc-CcEEEEeCCcc-eEEeccccEEEEeCCCeEEEEecCccEEEEE
Q 014147 370 PSLFLFIS-GNGTLSAGFSK-EQIVEEGEVLFVPAYMEFTIASQSKELHLYR 419 (430)
Q Consensus 370 ~~il~v~~-G~~~i~~~~~~-~~~l~~Ge~~fIpa~~~~~i~~~~~~~~~~~ 419 (430)
+....|+. |.+.....+.. ...++.||.++.+...+..++-++.+..+++
T Consensus 35 ~~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~~~g~ev~~~~~~y~iv~ 86 (95)
T PRK00364 35 PQEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGKYAGTEVKIDGEEYLILR 86 (95)
T ss_pred cceEEEEEECCCeECCCCCEeecccCCCCEEEEcCCCCeEEEECCEEEEEEE
Confidence 44444443 65555433321 5679999999999766655554334555554
No 133
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=29.71 E-value=1.8e+02 Score=28.98 Aligned_cols=45 Identities=9% Similarity=0.143 Sum_probs=37.9
Q ss_pred CCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEec
Q 014147 367 VAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQ 411 (430)
Q Consensus 367 ~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~~ 411 (430)
.-.|.++.+..|..+|..++++.+.+..+..+|+|.+..+++.+.
T Consensus 36 ~~~~~li~v~~G~~~i~~~~g~~l~i~~p~~~~~p~~~~~~~~~~ 80 (291)
T PRK15186 36 LLQSVLIKLTTGKISITTSSGEYITASGPMLIFLAKDQTIHITME 80 (291)
T ss_pred ecceEEEEeccceEEEEeCCCceEEeCCCeEEEEeCCcEEEEEec
Confidence 456899999999999987555358999999999999988888774
No 134
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.79 E-value=31 Score=36.64 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=17.3
Q ss_pred eEEccCCCEEEecCCCceee
Q 014147 267 YVKLNRGEALCIGANEPHAY 286 (430)
Q Consensus 267 ~v~l~pGd~i~ipaG~~HAy 286 (430)
...++|||.+|+|-|++|--
T Consensus 382 e~vle~GDllYfPRG~IHQA 401 (629)
T KOG3706|consen 382 EFVLEPGDLLYFPRGTIHQA 401 (629)
T ss_pred HhhcCCCcEEEecCcceeec
Confidence 34689999999999999964
No 135
>PF03172 Sp100: Sp100 domain; InterPro: IPR004865 The Sp100 and promyelocytic leukemia proteins (PML) are constituents of nuclear domains, known as nuclear dots (NDs or NBs - nuclear bodies or PML bodies), and are both covalently modified by the small ubiquitin-related protein SUMO-1. NBs play a role in autoimmunity, virus infections, and in the etiology of acute promyelocytic leukemia []. A functional nuclear localization signal and an NB-targeting region that coincides with an Sp100 homodimerization domain have been mapped. Sequences similar to the Sp100 homodimerization/ND-targeting region occur in several other proteins, which include the autoimmune regulator proteins (AIRE) and other numerous other transiently or permanently localised proteins. PML is expressed as a family of isoforms (PML I-VII) as a result of alternative splicing, most of which are found in the nucleus. Although there are many other functions of PML NBs in a wide range of cellular pathways, there is accumulating evidence that they represent preferential targets for viral infections and that PML plays a role in the mechanism of the antiviral action of interferon []. The Sp100 domain is usually found at the amino terminus of proteins that contain a SAND domain IPR000770 from INTERPRO. ; GO: 0005634 nucleus
Probab=28.64 E-value=38 Score=28.51 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=19.6
Q ss_pred CCceeEEecc-chhhhcCCCchH
Q 014147 143 HKPEMALALT-EFEALCGFISLK 164 (430)
Q Consensus 143 ~KpE~~~aL~-~~~~~~GFr~~~ 164 (430)
+|.|+++|++ +|.-+.|+|+.+
T Consensus 13 ~KvEIa~AI~kpFPfl~gLrD~~ 35 (103)
T PF03172_consen 13 NKVEIAYAITKPFPFLEGLRDHS 35 (103)
T ss_pred hHHHHHHHHcccchHHHHhhhcc
Confidence 7999999998 799999999764
No 136
>TIGR00202 csrA carbon storage regulator (csrA). Modulates the expression of genes in the glycogen biosynthesis and gluconeogenesis pathways by accelerating the 5'-to-3' degradation of these transcripts through selective RNA binding. The N-terminal end of the sequence (AA 11-45) contains the KH motif which is characteristic of a set of RNA-binding proteins.
Probab=28.56 E-value=91 Score=24.32 Aligned_cols=45 Identities=13% Similarity=0.321 Sum_probs=33.3
Q ss_pred EEccCCCEEEecCCCceeeccCcEEEEeecCCcEEEcCC-CCCc--cCHHHHHhcc
Q 014147 268 VKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAGL-TSKH--RDIQTLFSML 320 (430)
Q Consensus 268 v~l~pGd~i~ipaG~~HAy~~G~~~Eima~SDnv~R~gl-tpk~--~die~ll~~l 320 (430)
+.-|+||++.|. .+.-+-+...+++.+|.|. -||+ ++-+++..-+
T Consensus 4 LtRk~gE~I~Ig--------d~I~I~Vl~i~g~~VrlGI~AP~~v~I~R~Ei~~~i 51 (69)
T TIGR00202 4 LSRKVNESIQIG--------DDIEVKVLSVKGDQVKLGIEAPKEISIHREEIYERI 51 (69)
T ss_pred EEccCCCEEEeC--------CCEEEEEEEEcCCeEEEEEECCCCCeEeHHHHHHHH
Confidence 567899999995 2336777778899999996 5887 4566666554
No 137
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=28.26 E-value=1.9e+02 Score=23.58 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=30.7
Q ss_pred CeEEEEEEc-CcEEEEeCCcc-eEEeccccEEEEeCCCeEEEEecCccEEEEE
Q 014147 369 GPSLFLFIS-GNGTLSAGFSK-EQIVEEGEVLFVPAYMEFTIASQSKELHLYR 419 (430)
Q Consensus 369 ~~~il~v~~-G~~~i~~~~~~-~~~l~~Ge~~fIpa~~~~~i~~~~~~~~~~~ 419 (430)
.+....|+. |.+....++.. ...++.||.++.+...+..++-.+.+..+++
T Consensus 33 k~~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~~~y~i~~ 85 (93)
T cd00320 33 KPQEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPKYAGTEVKLDGEEYLILR 85 (93)
T ss_pred CceEEEEEEECCCeECCCCCCccccccCCCEEEECCCCceEEEECCEEEEEEE
Confidence 344444443 65655443321 5679999999999876655555334555554
No 138
>PF02599 CsrA: Global regulator protein family; InterPro: IPR003751 The RNA-binding protein CsrA (carbon storage regulator) is a new kind of global regulator, which facilitates specific mRNA decay []. CsrA is entirely contained within a globular complex of approximately 18 CsrA-H6 subunits and a single RNA, CsrB. CsrA binds to the CsrB RNA molecule to form the Csr regulatory system which has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis [].; GO: 0003723 RNA binding, 0006109 regulation of carbohydrate metabolic process, 0006402 mRNA catabolic process; PDB: 1Y00_B 2JPP_A 1T3O_A 1VPZ_A.
Probab=28.12 E-value=60 Score=24.03 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=29.6
Q ss_pred eEEccCCCEEEecCCCceeeccCcEEEEeecCCcEEEcCC-CCCcc--CHHHHHh
Q 014147 267 YVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAGL-TSKHR--DIQTLFS 318 (430)
Q Consensus 267 ~v~l~pGd~i~ipaG~~HAy~~G~~~Eima~SDnv~R~gl-tpk~~--die~ll~ 318 (430)
.+.-++||.+.| +.+.-+.+-..+++.+|.|. .||.+ +-+++.+
T Consensus 3 vLsRk~gE~I~I--------g~~I~I~Vl~i~~~~VklgI~AP~~v~I~R~Ei~~ 49 (54)
T PF02599_consen 3 VLSRKVGESIVI--------GDDIEITVLEISGGQVKLGIDAPKEVPIYREEIYE 49 (54)
T ss_dssp EEEEETT-EEEE--------TTTEEEEEEEEETTEEEEEEEECTTSEEEEHHHHH
T ss_pred EEEccCCCEEEE--------CCCEEEEEEEEcCCEEEEEEECCCCCEEeHHHHHH
Confidence 356689999999 33336777777899999996 48864 3444443
No 139
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=26.92 E-value=2.2e+02 Score=27.40 Aligned_cols=42 Identities=10% Similarity=0.085 Sum_probs=26.7
Q ss_pred CeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEec
Q 014147 369 GPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQ 411 (430)
Q Consensus 369 ~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~~ 411 (430)
...+-+.++|.......++ .+.|.+|+++-|+++.-=.+.++
T Consensus 136 ~~~v~V~~DG~~~t~~aG~-~l~L~PGESiTL~Pg~yH~Fw~e 177 (225)
T PF07385_consen 136 DTDVTVPVDGIRRTVPAGT-QLRLNPGESITLPPGIYHWFWGE 177 (225)
T ss_dssp SS-EEEEETTEEEEE-TT--EEEE-TT-EEEE-TTEEEEEEE-
T ss_pred CCCeEEecCCcEEEecCCc-eEEeCCCCeEeeCCCCeeeEEec
Confidence 3467788899877665666 79999999999999975334443
No 140
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=26.14 E-value=1.5e+02 Score=24.03 Aligned_cols=50 Identities=14% Similarity=0.241 Sum_probs=29.9
Q ss_pred CeEEEEEEc-CcEEEEeCCcc-eEEeccccEEEEeCCCeEEEEecCccEEEE
Q 014147 369 GPSLFLFIS-GNGTLSAGFSK-EQIVEEGEVLFVPAYMEFTIASQSKELHLY 418 (430)
Q Consensus 369 ~~~il~v~~-G~~~i~~~~~~-~~~l~~Ge~~fIpa~~~~~i~~~~~~~~~~ 418 (430)
.+....|++ |.|.....+.. ...++.||.++.|...+..++-.+..+.++
T Consensus 33 ~~~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~~~~~~~ 84 (93)
T PF00166_consen 33 KPNQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPKYAGTEVKFDGEKYLIV 84 (93)
T ss_dssp SEEEEEEEEE-SEEETTTSSEEETSS-TTSEEEEETTTSEEEEETTEEEEEE
T ss_pred ccceeEEEEcCCccccCCCcEeeeeeeeccEEeccccCceEEEECCEEEEEE
Confidence 455555554 77776533331 456889999999988776666533344443
No 141
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=25.65 E-value=41 Score=30.43 Aligned_cols=20 Identities=10% Similarity=0.087 Sum_probs=16.5
Q ss_pred EccCCCEEEe----cCCCceeecc
Q 014147 269 KLNRGEALCI----GANEPHAYIR 288 (430)
Q Consensus 269 ~l~pGd~i~i----paG~~HAy~~ 288 (430)
..+|||-+.+ |.|++|+||-
T Consensus 127 ~a~~~DeV~~rLES~GG~Vh~YGL 150 (155)
T PF08496_consen 127 VATPEDEVLVRLESPGGMVHGYGL 150 (155)
T ss_pred hCCCCCeEEEEEecCCceeeccch
Confidence 3578888887 9999999973
No 142
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=25.41 E-value=1.8e+02 Score=21.86 Aligned_cols=45 Identities=11% Similarity=0.153 Sum_probs=26.8
Q ss_pred EecCCCeEEecCCCCeEEEEEEcCcEEEEeCC--cc---eEEeccccEEE
Q 014147 355 VIPQAASLVFPSVAGPSLFLFISGNGTLSAGF--SK---EQIVEEGEVLF 399 (430)
Q Consensus 355 ~~~~g~~~~~~~~~~~~il~v~~G~~~i~~~~--~~---~~~l~~Ge~~f 399 (430)
++.+|+.+.........++++++|.+.+.... +. ...+.+|+.+-
T Consensus 3 ~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g 52 (91)
T PF00027_consen 3 TYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFG 52 (91)
T ss_dssp EESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEES
T ss_pred EECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeecccc
Confidence 34456544443344678999999999986422 21 23556666543
No 143
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=25.07 E-value=66 Score=32.00 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=19.6
Q ss_pred eEEccCCCEEEecCCCceeeccCc
Q 014147 267 YVKLNRGEALCIGANEPHAYIRGE 290 (430)
Q Consensus 267 ~v~l~pGd~i~ipaG~~HAy~~G~ 290 (430)
.+.+++||++||||+.-...+.|.
T Consensus 272 ~~~l~~G~~~~ipa~~~~~~i~g~ 295 (302)
T TIGR00218 272 TLPLKKGESFFIPAHLGPFTIEGE 295 (302)
T ss_pred EEEEecccEEEEccCCccEEEEee
Confidence 477999999999999876666665
No 144
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=25.01 E-value=23 Score=35.21 Aligned_cols=43 Identities=30% Similarity=0.337 Sum_probs=33.4
Q ss_pred cCCCCCceeeeeccC-CCCceeccCChHHHHhhcccCC---CCCCCC
Q 014147 99 WGGDLPFLFKVLSVE-KALSIQAHPDKELARTLHKSQP---SLYSDE 141 (430)
Q Consensus 99 fg~~lP~L~KvLda~-~~LSIQvHPd~~~A~~~~~~~p---~~Y~D~ 141 (430)
..+++|+-+-+|+-. +.-==||||+-+-|+.+..++- ++|.|-
T Consensus 206 LmPk~PIYv~lL~~eAq~viGqVHp~t~~A~a~Le~EGF~~~gYVDI 252 (336)
T COG3138 206 LMPKHPIYVHLLSEEAQAVIGQVHPDTAPARAVLEKEGFRYRGYVDI 252 (336)
T ss_pred hCCCCceeeccCCHHHHHHhCCcCCCchHHHHHHHHhCccccCeeEe
Confidence 357899999999864 4445599999999998887764 777765
No 145
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=25.01 E-value=3.6e+02 Score=21.58 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=35.1
Q ss_pred CCeEEEEEEcCcEEEEeCCc------ceEEeccccEEEEeCCCeEEEEecCccEEEE
Q 014147 368 AGPSLFLFISGNGTLSAGFS------KEQIVEEGEVLFVPAYMEFTIASQSKELHLY 418 (430)
Q Consensus 368 ~~~~il~v~~G~~~i~~~~~------~~~~l~~Ge~~fIpa~~~~~i~~~~~~~~~~ 418 (430)
+....+.|++|+.+...-++ ....+..|+..+|++..--+|..-+.+++++
T Consensus 24 GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D~~f~ 80 (82)
T PF09313_consen 24 GTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDDLRFQ 80 (82)
T ss_dssp TEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT-EEE
T ss_pred CeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCCEEEE
Confidence 45788999999999864211 1667889999999999877777655556554
No 146
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=24.29 E-value=56 Score=30.07 Aligned_cols=31 Identities=13% Similarity=0.297 Sum_probs=24.9
Q ss_pred hcceEEccCCCEEEecCCCceeeccCcEEEEeecCCcE
Q 014147 264 LLNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNV 301 (430)
Q Consensus 264 ~Ln~v~l~pGd~i~ipaG~~HAy~~G~~~Eima~SDnv 301 (430)
-.+.+.+.+||.|-||+|+=|=.- |+.|+|.
T Consensus 116 ~~~~i~c~~gDLI~vP~gi~HwFt-------lt~~~~f 146 (181)
T COG1791 116 KVYQIRCEKGDLISVPPGIYHWFT-------LTESPNF 146 (181)
T ss_pred cEEEEEEccCCEEecCCCceEEEE-------ccCCCcE
Confidence 456788999999999999999873 4456665
No 147
>PLN02288 mannose-6-phosphate isomerase
Probab=24.28 E-value=65 Score=33.63 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=18.4
Q ss_pred eEEeccccEEEEeCCCe-EEEEe
Q 014147 389 EQIVEEGEVLFVPAYME-FTIAS 410 (430)
Q Consensus 389 ~~~l~~Ge~~fIpa~~~-~~i~~ 410 (430)
.+.|++||++|+||+.- -.++|
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl~G 274 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYLSG 274 (394)
T ss_pred eEecCCCCEEEecCCCCceecCC
Confidence 57899999999999976 66776
No 148
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=23.52 E-value=84 Score=28.91 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=21.0
Q ss_pred eEEccCC--CEEEecCCCceeeccCc-EEEEeecCCcEE
Q 014147 267 YVKLNRG--EALCIGANEPHAYIRGE-CIECMATSDNVV 302 (430)
Q Consensus 267 ~v~l~pG--d~i~ipaG~~HAy~~G~-~~Eima~SDnv~ 302 (430)
.+.|.++ -.+|||+|..|++..-. -.+++-..++.|
T Consensus 97 ~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~~t~~y 135 (176)
T PF00908_consen 97 SVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYKVTNYY 135 (176)
T ss_dssp EEEEETTT--EEEE-TTEEEEEEESSSEEEEEEEESS--
T ss_pred EEEeCccccCEEEeCCcceeeEEeccCceEEEEecCCcc
Confidence 3444444 58999999999987544 455554444444
No 149
>COG0355 AtpC F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) [Energy production and conversion]
Probab=22.61 E-value=1.7e+02 Score=25.69 Aligned_cols=64 Identities=13% Similarity=0.116 Sum_probs=40.5
Q ss_pred CCceehhhhhcceEEccCCCEEEecCC--Cc-eeeccCcEEEEeecCCcEEEcC--CCCCccCHHHHHhc
Q 014147 255 DDAGVLAAFLLNYVKLNRGEALCIGAN--EP-HAYIRGECIECMATSDNVVRAG--LTSKHRDIQTLFSM 319 (430)
Q Consensus 255 ~D~G~~~~~~Ln~v~l~pGd~i~ipaG--~~-HAy~~G~~~Eima~SDnv~R~g--ltpk~~die~ll~~ 319 (430)
|+.||+.-..==.-.++||...+..++ .- +.+++|=++||+ .+..+|=+. .....+|.+.+.+.
T Consensus 30 Ge~GILp~H~Plit~Lk~g~v~i~~~~~~~~~~i~VsgGfleV~-~~~vtIlad~A~~~~did~~~a~~~ 98 (135)
T COG0355 30 GELGILPGHAPLITALKPGVVRIKTEDGDKEEKIAVSGGFLEVQ-PNEVTILADSAERADDIDEARAEEA 98 (135)
T ss_pred eeeecCCCCccceeeecCcEEEEEEcCCCceEEEEEeccEEEEe-CCEEEEEEceeEecccCCHHHHHHH
Confidence 456665432222236899999999884 54 899999999998 555555443 23455665544433
No 150
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=22.37 E-value=54 Score=37.18 Aligned_cols=25 Identities=24% Similarity=0.217 Sum_probs=22.2
Q ss_pred hcceEEccCCCEEEecCCCceeecc
Q 014147 264 LLNYVKLNRGEALCIGANEPHAYIR 288 (430)
Q Consensus 264 ~Ln~v~l~pGd~i~ipaG~~HAy~~ 288 (430)
.-..+.|++|+.+|||.|-+||+.-
T Consensus 194 kC~~~~l~~g~T~~iPsGwIhAV~T 218 (776)
T KOG1633|consen 194 KCYKCILKQGQTLFIPSGWIHAVLT 218 (776)
T ss_pred eeEEEEeccCceEecccceeEeeec
Confidence 6677899999999999999999763
No 151
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=22.00 E-value=22 Score=33.87 Aligned_cols=13 Identities=54% Similarity=0.823 Sum_probs=11.0
Q ss_pred CCCCceeccCChH
Q 014147 113 EKALSIQAHPDKE 125 (430)
Q Consensus 113 ~~~LSIQvHPd~~ 125 (430)
=+.||||.||||.
T Consensus 120 YR~LSik~HPDK~ 132 (230)
T KOG0721|consen 120 YRRLSIKYHPDKQ 132 (230)
T ss_pred HHHhhhhhCCCcC
Confidence 3689999999983
No 152
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=21.76 E-value=5.4e+02 Score=25.89 Aligned_cols=44 Identities=20% Similarity=0.346 Sum_probs=34.8
Q ss_pred CCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCCeEEEEe
Q 014147 366 SVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIAS 410 (430)
Q Consensus 366 ~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~~~~i~~ 410 (430)
..++--+++-.+|...|..+-+ .+.+.++|..+||.|..+.|.-
T Consensus 152 NsDGDFLiVPQ~G~L~I~TEfG-rllV~P~EI~VIpqG~RFsi~v 195 (446)
T KOG1417|consen 152 NSDGDFLIVPQQGRLWITTEFG-RLLVTPNEIAVIPQGIRFSIDV 195 (446)
T ss_pred cCCCCEEEecccCcEEEEeecc-ceeecccceEEeecccEEEEec
Confidence 4456566677789988887766 8999999999999998866543
No 153
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=21.50 E-value=87 Score=27.79 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=20.3
Q ss_pred CCceeh-hhhhcceEEccCCCEEEecCCCceeec
Q 014147 255 DDAGVL-AAFLLNYVKLNRGEALCIGANEPHAYI 287 (430)
Q Consensus 255 ~D~G~~-~~~~Ln~v~l~pGd~i~ipaG~~HAy~ 287 (430)
.|+..+ ..---+.+.|+||+++..-|+.+|+-+
T Consensus 101 ~D~~f~~~~~~~~~i~l~~g~f~iffP~d~H~p~ 134 (153)
T PF04074_consen 101 KDIAFYEDGKNESFITLKPGDFAIFFPEDAHRPG 134 (153)
T ss_dssp TTBEEES--TTEEEEEE-TTEEEEE-TT--EEEE
T ss_pred CCEEEecCCCCceEEEEcCCEEEEECCCcccccc
Confidence 345544 233456889999999999999999953
No 154
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=21.39 E-value=46 Score=34.02 Aligned_cols=54 Identities=17% Similarity=0.168 Sum_probs=36.3
Q ss_pred EEccCCCEEEecCCCceeeccCc-EE------EEeecCCcEEEcCC--CC---Cc-cCHHHHHhccccCCC
Q 014147 268 VKLNRGEALCIGANEPHAYIRGE-CI------ECMATSDNVVRAGL--TS---KH-RDIQTLFSMLNRRQG 325 (430)
Q Consensus 268 v~l~pGd~i~ipaG~~HAy~~G~-~~------Eima~SDnv~R~gl--tp---k~-~die~ll~~l~~~~~ 325 (430)
-....|+++ -|+|+.-.|. |+ =+..+||||||... .+ |- -.-|+|+.|++|+..
T Consensus 345 W~~st~efv----Rtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~k 411 (499)
T KOG0281|consen 345 WSTSTCEFV----RTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK 411 (499)
T ss_pred Eeccceeee----hhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCc
Confidence 344455554 4677777777 64 47789999999532 22 22 346899999999864
No 155
>PRK14898 DNA-directed RNA polymerase subunit A''; Provisional
Probab=21.14 E-value=5.3e+02 Score=29.85 Aligned_cols=49 Identities=10% Similarity=-0.042 Sum_probs=31.6
Q ss_pred EEEEEEecCCCeEEecCCCCeEEEEEEcCcEEEEeCCcceEEeccccEEEEeCCC
Q 014147 350 EVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYM 404 (430)
Q Consensus 350 ~v~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~~l~~Ge~~fIpa~~ 404 (430)
.+.+|+...|..+...+ ..++++.-+|...-... ..|+.||.+.+|...
T Consensus 151 ~l~~I~t~~Grei~vT~--~H~~~v~~~g~~~~~~a----~~l~~GD~i~~~~~~ 199 (858)
T PRK14898 151 KLIKIKTESGRTIRATP--YHSFVTRKDNEVIPVEG----SELKIGDWLPVVRSL 199 (858)
T ss_pred cEEEEEeCCCcEEEECC--CCeEEEeeCCeEEEeeH----HhCCCCCEEeeeeec
Confidence 46677777777766543 44566666665443332 358999999888644
No 156
>PRK00794 flbT flagellar biosynthesis repressor FlbT; Reviewed
Probab=20.74 E-value=1.4e+02 Score=26.36 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=29.9
Q ss_pred eEEccCCCEEEecCCCceeeccCcEEEEeecCCcEEEcC
Q 014147 267 YVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAG 305 (430)
Q Consensus 267 ~v~l~pGd~i~ipaG~~HAy~~G~~~Eima~SDnv~R~g 305 (430)
++.|||||-|+|..-++-. -...-+|| .|-.+++|-.
T Consensus 5 kl~LKp~ERi~INGAVirn-drr~~l~i-~n~a~~Lre~ 41 (132)
T PRK00794 5 KLSLKPGERIFINGAVLRN-DRKVSLEL-LNDATFLRER 41 (132)
T ss_pred eEEecCCCEEEEcCeEEEe-CCceEEEE-ecCCceechh
Confidence 5789999999999999988 66668889 4556777743
No 157
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=20.58 E-value=2.5e+02 Score=27.45 Aligned_cols=62 Identities=19% Similarity=-0.017 Sum_probs=34.3
Q ss_pred CCceEEEEEEecCCCeEEecCCCCeEEEEEEcCcEEEEeCCcc--eEEeccccEEEEeCCCeEEEEe
Q 014147 346 FEEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAGFSK--EQIVEEGEVLFVPAYMEFTIAS 410 (430)
Q Consensus 346 ~~~F~v~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~~~~~~--~~~l~~Ge~~fIpa~~~~~i~~ 410 (430)
.+--...++++++|...-.--+..-.-++|++|.... ++.+ ...|.+|.-+++|||. ..+.+
T Consensus 33 ~~g~~~~~vkf~~g~~~pph~H~~~~~~~Vi~G~~~~--~~~~a~~~~l~~Gsy~~~PaG~-~h~~~ 96 (251)
T PF14499_consen 33 KDGPSGMRVKFPAGFSSPPHIHNADYRGTVISGELHN--GDPKAAAMWLPAGSYWFQPAGE-PHITA 96 (251)
T ss_dssp TTS-EEEEEEE-TT-EE--BEESS-EEEEEEESEEEE--TTEE-----E-TTEEEEE-TT--EEEET
T ss_pred cCCcceEEEEcCCCccCCCcceeeeEEEEEEEeEEEc--CCCcccceecCCCceEeccCCC-ceeee
Confidence 4567777899987754221122345688999996555 3321 3559999999999994 45555
Done!