BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014150
         (430 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A
           Flavocytochrome C3 Fumarate Reductase
 pdb|1QO8|D Chain D, The Structure Of The Open Conformation Of A
           Flavocytochrome C3 Fumarate Reductase
          Length = 566

 Score = 32.3 bits (72), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 20/88 (22%), Positives = 45/88 (51%), Gaps = 15/88 (17%)

Query: 29  DQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQTFIKNKLVNIVDHV 88
           ++ +S+L  RD    ++L +  ++ W     ++FDN         Q + K K+V   DH+
Sbjct: 388 NRFISELTTRDKASDAILKQPGQFAW-----IIFDN---------QLYKKAKMVRGYDHL 433

Query: 89  LLLHNGPILKFKLSHRDLLGVSDIDRWI 116
            +L+ G  ++ +L+    + V+D+ + +
Sbjct: 434 EMLYKGDTVE-QLAKSTGMKVADLAKTV 460


>pdb|3EK2|A Chain A, Crystal Structure Of Eonyl-(Acyl Carrier Protein)
           Reductase From Burkholderia Pseudomallei 1719b
 pdb|3EK2|B Chain B, Crystal Structure Of Eonyl-(Acyl Carrier Protein)
           Reductase From Burkholderia Pseudomallei 1719b
 pdb|3EK2|C Chain C, Crystal Structure Of Eonyl-(Acyl Carrier Protein)
           Reductase From Burkholderia Pseudomallei 1719b
 pdb|3EK2|D Chain D, Crystal Structure Of Eonyl-(Acyl Carrier Protein)
           Reductase From Burkholderia Pseudomallei 1719b
          Length = 271

 Score = 29.6 bits (65), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 365 VKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARAEIIY 424
           +K +  SGI+S  + + FV SNSP+   +TI+     G +     LL    +   AE+++
Sbjct: 200 IKTLAASGIKSFGKILDFVESNSPLKRNVTIEQVGNAGAF-----LLSDLASGVTAEVMH 254

Query: 425 LD 426
           +D
Sbjct: 255 VD 256


>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
          Length = 169

 Score = 29.3 bits (64), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 146 CQNLIHLELFNCLLKPPST---FKGFRNLKSLDL--QHITLSQDVFENLISSSPTLERLT 200
           C NL HL L    +K  ST    K   NLKSLDL    +T      EN+    P      
Sbjct: 92  CPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNAYRENVFKLLP-----Q 146

Query: 201 LMNFDGFTHLNIDAPN 216
           +M  DG+   N +AP+
Sbjct: 147 VMYLDGYDRDNKEAPD 162


>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
 pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
 pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
 pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
          Length = 606

 Score = 29.3 bits (64), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 13/92 (14%)

Query: 148 NLIHLEL-FNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDG 206
           +L HL+L FN  +   + F G   L+ LD QH TL + V E   S+  +LE+L  ++   
Sbjct: 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR-VTE--FSAFLSLEKLLYLDI-S 432

Query: 207 FTHLNIDAPNLQFFDIGGVFDDVTFENTFHLA 238
           +T+  ID      FD  G+F  +T  NT  +A
Sbjct: 433 YTNTKID------FD--GIFLGLTSLNTLKMA 456


>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
          Length = 599

 Score = 29.3 bits (64), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 13/92 (14%)

Query: 148 NLIHLEL-FNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDG 206
           +L HL+L FN  +   + F G   L+ LD QH TL + V E   S+  +LE+L  ++   
Sbjct: 372 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR-VTE--FSAFLSLEKLLYLDI-S 427

Query: 207 FTHLNIDAPNLQFFDIGGVFDDVTFENTFHLA 238
           +T+  ID      FD  G+F  +T  NT  +A
Sbjct: 428 YTNTKID------FD--GIFLGLTSLNTLKMA 451


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,501,619
Number of Sequences: 62578
Number of extensions: 507841
Number of successful extensions: 1246
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1241
Number of HSP's gapped (non-prelim): 14
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)