Query 014150
Match_columns 430
No_of_seqs 162 out of 2084
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 02:19:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014150.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014150hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.8 2.2E-20 4.7E-25 162.9 4.1 278 20-333 98-393 (419)
2 KOG4341 F-box protein containi 99.6 1.4E-17 3.1E-22 151.8 -2.0 341 22-401 74-439 (483)
3 smart00579 FBD domain in FBox 99.2 2.1E-11 4.5E-16 87.5 6.9 69 357-425 2-72 (72)
4 PF08387 FBD: FBD; InterPro: 98.9 1.2E-09 2.5E-14 72.0 4.1 42 355-396 9-50 (51)
5 PLN00113 leucine-rich repeat r 98.8 5.9E-09 1.3E-13 113.3 7.0 122 122-245 93-222 (968)
6 PF12937 F-box-like: F-box-lik 98.8 3.5E-09 7.6E-14 68.8 3.1 35 20-54 1-35 (47)
7 cd00116 LRR_RI Leucine-rich re 98.8 6.1E-09 1.3E-13 98.2 4.5 248 123-399 24-289 (319)
8 cd00116 LRR_RI Leucine-rich re 98.7 1.1E-08 2.3E-13 96.6 3.1 64 142-205 76-148 (319)
9 PLN00113 leucine-rich repeat r 98.7 2.8E-08 6.1E-13 108.0 6.7 81 122-204 188-270 (968)
10 KOG4194 Membrane glycoprotein 98.4 5.1E-08 1.1E-12 93.7 0.8 104 94-203 125-230 (873)
11 PF00646 F-box: F-box domain; 98.4 8.4E-08 1.8E-12 62.7 1.0 37 20-56 3-39 (48)
12 smart00256 FBOX A Receptor for 98.3 6.9E-07 1.5E-11 56.1 3.1 34 23-56 1-34 (41)
13 KOG4194 Membrane glycoprotein 98.3 8E-08 1.7E-12 92.4 -2.4 79 122-202 173-253 (873)
14 PLN03210 Resistant to P. syrin 98.2 2.8E-06 6E-11 93.4 8.7 81 143-224 630-713 (1153)
15 KOG1909 Ran GTPase-activating 98.2 1.7E-06 3.6E-11 78.5 4.8 165 167-339 90-282 (382)
16 PLN03210 Resistant to P. syrin 98.2 4.2E-06 9.2E-11 92.0 8.6 99 146-246 610-715 (1153)
17 KOG2982 Uncharacterized conser 98.1 6.2E-06 1.3E-10 73.3 5.3 225 148-385 46-307 (418)
18 KOG3207 Beta-tubulin folding c 98.0 5.6E-07 1.2E-11 83.8 -2.5 203 123-338 122-337 (505)
19 KOG2120 SCF ubiquitin ligase, 98.0 1.1E-06 2.3E-11 78.1 -0.8 156 170-340 186-351 (419)
20 KOG3207 Beta-tubulin folding c 97.9 1.4E-06 3.1E-11 81.2 -1.2 180 121-309 145-336 (505)
21 KOG1909 Ran GTPase-activating 97.8 7.8E-06 1.7E-10 74.3 1.9 154 231-399 116-281 (382)
22 KOG4341 F-box protein containi 97.7 5.9E-07 1.3E-11 83.2 -6.7 203 122-338 138-357 (483)
23 PF14580 LRR_9: Leucine-rich r 97.7 1.2E-05 2.7E-10 67.8 0.4 78 123-204 20-98 (175)
24 KOG0617 Ras suppressor protein 97.6 1E-06 2.2E-11 72.0 -6.5 156 143-339 29-185 (264)
25 KOG0444 Cytoskeletal regulator 97.5 1.6E-06 3.5E-11 84.3 -8.1 184 131-339 110-303 (1255)
26 PF13855 LRR_8: Leucine rich r 97.3 8.7E-05 1.9E-09 51.0 1.5 57 147-204 1-59 (61)
27 KOG3665 ZYG-1-like serine/thre 97.3 9.7E-05 2.1E-09 76.0 2.3 155 215-396 122-283 (699)
28 PRK15387 E3 ubiquitin-protein 97.3 0.00041 8.9E-09 71.9 6.2 58 138-204 215-272 (788)
29 KOG3665 ZYG-1-like serine/thre 97.3 0.0001 2.2E-09 75.8 1.4 158 147-337 122-285 (699)
30 KOG1947 Leucine rich repeat pr 97.2 5.1E-05 1.1E-09 75.8 -1.1 144 167-338 186-332 (482)
31 KOG0444 Cytoskeletal regulator 97.2 3.8E-06 8.2E-11 81.8 -9.2 76 127-203 129-206 (1255)
32 PF14580 LRR_9: Leucine-rich r 97.1 0.00024 5.3E-09 60.0 2.3 66 267-338 85-151 (175)
33 KOG1947 Leucine rich repeat pr 97.1 6.6E-05 1.4E-09 75.0 -1.4 129 94-224 188-330 (482)
34 KOG0617 Ras suppressor protein 97.1 2.3E-05 4.9E-10 64.3 -4.0 125 130-284 62-187 (264)
35 KOG1259 Nischarin, modulator o 97.1 0.00036 7.8E-09 62.4 2.8 65 137-203 172-246 (490)
36 PRK15387 E3 ubiquitin-protein 96.9 0.001 2.3E-08 69.0 4.7 57 270-340 402-458 (788)
37 KOG0618 Serine/threonine phosp 96.8 0.00014 3E-09 74.3 -2.5 69 110-182 254-323 (1081)
38 PRK15370 E3 ubiquitin-protein 96.7 0.0022 4.8E-08 66.8 5.3 52 147-204 199-251 (754)
39 PF07723 LRR_2: Leucine Rich R 96.6 0.003 6.5E-08 34.8 2.9 25 170-194 1-26 (26)
40 PRK15370 E3 ubiquitin-protein 96.6 0.0015 3.3E-08 68.0 3.1 60 270-339 367-427 (754)
41 KOG0472 Leucine-rich repeat pr 96.4 0.00088 1.9E-08 62.4 0.0 65 116-181 243-309 (565)
42 PF13855 LRR_8: Leucine rich r 96.3 0.0036 7.8E-08 42.8 2.6 56 123-180 2-60 (61)
43 PF12799 LRR_4: Leucine Rich r 96.2 0.0018 3.9E-08 41.0 0.7 36 147-182 1-37 (44)
44 KOG0472 Leucine-rich repeat pr 95.8 4.8E-05 1E-09 70.6 -11.0 177 136-338 126-308 (565)
45 KOG2982 Uncharacterized conser 95.6 0.0075 1.6E-07 54.2 2.3 90 233-339 69-158 (418)
46 KOG0618 Serine/threonine phosp 95.6 0.0043 9.3E-08 63.9 0.9 46 137-182 81-127 (1081)
47 KOG4658 Apoptotic ATPase [Sign 95.5 0.028 6.1E-07 59.8 6.7 122 147-279 523-651 (889)
48 KOG0281 Beta-TrCP (transducin 95.2 0.01 2.2E-07 53.9 1.7 37 17-53 72-112 (499)
49 PLN03150 hypothetical protein; 95.0 0.017 3.7E-07 59.5 3.0 77 148-225 419-500 (623)
50 KOG1859 Leucine-rich repeat pr 94.8 0.0054 1.2E-07 61.6 -1.1 101 168-281 186-290 (1096)
51 KOG4237 Extracellular matrix p 94.7 0.025 5.5E-07 52.9 3.0 59 122-182 67-129 (498)
52 KOG1644 U2-associated snRNP A' 94.5 0.062 1.3E-06 45.8 4.6 58 146-204 63-123 (233)
53 PF12799 LRR_4: Leucine Rich r 94.5 0.026 5.6E-07 35.6 1.8 35 169-205 1-35 (44)
54 PLN03215 ascorbic acid mannose 94.3 0.03 6.5E-07 52.9 2.6 38 19-56 3-41 (373)
55 KOG1644 U2-associated snRNP A' 94.0 0.084 1.8E-06 45.0 4.3 78 147-225 42-123 (233)
56 KOG2997 F-box protein FBX9 [Ge 92.9 0.066 1.4E-06 48.5 2.2 37 16-52 103-144 (366)
57 COG5238 RNA1 Ran GTPase-activa 92.1 0.14 3.1E-06 45.7 3.2 74 266-340 210-285 (388)
58 PRK15386 type III secretion pr 91.9 0.32 6.9E-06 46.8 5.5 10 148-157 73-82 (426)
59 KOG3864 Uncharacterized conser 91.7 0.024 5.2E-07 48.2 -1.9 72 138-209 92-166 (221)
60 KOG2123 Uncharacterized conser 91.7 0.012 2.6E-07 52.5 -3.8 12 322-333 112-123 (388)
61 KOG2739 Leucine-rich acidic nu 91.7 0.05 1.1E-06 48.2 -0.0 59 144-203 40-100 (260)
62 PLN03150 hypothetical protein; 91.1 0.19 4.1E-06 52.0 3.4 68 137-205 432-501 (623)
63 COG4886 Leucine-rich repeat (L 89.6 0.17 3.6E-06 49.3 1.5 76 147-225 116-196 (394)
64 smart00367 LRR_CC Leucine-rich 89.5 0.21 4.5E-06 27.3 1.2 22 168-189 1-23 (26)
65 COG4886 Leucine-rich repeat (L 89.2 0.22 4.7E-06 48.4 1.9 162 123-308 117-286 (394)
66 PF13516 LRR_6: Leucine Rich r 88.5 0.3 6.6E-06 26.0 1.4 22 168-189 1-22 (24)
67 PF13013 F-box-like_2: F-box-l 86.9 0.89 1.9E-05 34.9 3.6 30 19-48 21-50 (109)
68 KOG1259 Nischarin, modulator o 86.6 0.16 3.5E-06 46.0 -0.7 35 146-180 328-363 (490)
69 PRK15386 type III secretion pr 86.4 1 2.2E-05 43.4 4.5 54 167-225 50-104 (426)
70 KOG2739 Leucine-rich acidic nu 86.3 0.26 5.6E-06 43.8 0.4 93 231-337 61-153 (260)
71 KOG2123 Uncharacterized conser 86.2 0.11 2.4E-06 46.5 -1.8 57 147-203 41-97 (388)
72 KOG4658 Apoptotic ATPase [Sign 85.9 0.33 7.3E-06 51.9 1.1 116 263-399 564-679 (889)
73 KOG0274 Cdc4 and related F-box 85.4 0.35 7.6E-06 48.7 1.0 39 15-53 103-141 (537)
74 KOG4579 Leucine-rich repeat (L 84.7 0.066 1.4E-06 42.8 -3.5 57 147-205 53-111 (177)
75 COG5238 RNA1 Ran GTPase-activa 83.9 2.7 5.9E-05 37.9 5.6 186 146-339 29-254 (388)
76 KOG3864 Uncharacterized conser 83.0 0.075 1.6E-06 45.3 -4.1 66 143-209 121-191 (221)
77 PF08387 FBD: FBD; InterPro: 82.2 2.6 5.6E-05 27.4 3.8 37 299-335 14-50 (51)
78 PF00560 LRR_1: Leucine Rich R 80.5 1.1 2.4E-05 23.3 1.2 14 148-161 1-14 (22)
79 PF13504 LRR_7: Leucine rich r 73.3 1.6 3.5E-05 21.1 0.6 9 171-179 3-11 (17)
80 KOG4579 Leucine-rich repeat (L 71.0 0.83 1.8E-05 36.7 -1.2 65 120-184 49-115 (177)
81 smart00579 FBD domain in FBox 68.9 9.5 0.00021 26.6 4.1 40 299-338 5-44 (72)
82 KOG4237 Extracellular matrix p 66.7 3.8 8.3E-05 39.0 2.0 57 146-203 273-331 (498)
83 smart00368 LRR_RI Leucine rich 63.1 4.9 0.00011 22.3 1.3 21 169-189 2-22 (28)
84 PF13306 LRR_5: Leucine rich r 59.3 14 0.00029 29.0 3.8 56 145-202 10-66 (129)
85 KOG0531 Protein phosphatase 1, 58.0 2.8 6.1E-05 41.0 -0.5 35 146-180 117-151 (414)
86 KOG1859 Leucine-rich repeat pr 50.0 1.8 3.9E-05 44.4 -3.2 37 167-203 252-288 (1096)
87 KOG4308 LRR-containing protein 49.7 0.21 4.6E-06 49.5 -9.8 67 139-205 107-183 (478)
88 PF09372 PRANC: PRANC domain; 48.1 12 0.00026 28.0 1.7 25 18-42 70-94 (97)
89 KOG0531 Protein phosphatase 1, 46.9 9.4 0.0002 37.4 1.2 58 143-204 91-150 (414)
90 smart00369 LRR_TYP Leucine-ric 40.0 15 0.00032 19.6 0.8 15 168-182 1-15 (26)
91 smart00370 LRR Leucine-rich re 40.0 15 0.00032 19.6 0.8 15 168-182 1-15 (26)
92 KOG3926 F-box proteins [Amino 37.9 30 0.00064 31.2 2.7 32 16-47 198-230 (332)
93 KOG0532 Leucine-rich repeat (L 31.3 7.6 0.00017 38.8 -2.1 83 138-224 157-243 (722)
94 KOG3763 mRNA export factor TAP 28.1 69 0.0015 32.2 3.7 88 232-333 215-307 (585)
95 KOG4408 Putative Mg2+ and Co2+ 26.8 16 0.00034 33.9 -0.8 34 20-53 8-41 (386)
96 smart00365 LRR_SD22 Leucine-ri 24.4 39 0.00085 18.4 0.8 13 169-181 2-14 (26)
97 KOG3763 mRNA export factor TAP 23.0 63 0.0014 32.5 2.4 37 167-203 216-253 (585)
98 KOG0532 Leucine-rich repeat (L 22.3 25 0.00055 35.4 -0.4 47 135-182 200-247 (722)
99 PF01827 FTH: FTH domain; Int 20.6 4E+02 0.0086 20.9 6.5 116 81-201 3-124 (142)
100 smart00446 LRRcap occurring C- 20.0 71 0.0015 17.5 1.2 16 321-336 7-22 (26)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.2e-20 Score=162.92 Aligned_cols=278 Identities=17% Similarity=0.150 Sum_probs=187.2
Q ss_pred cCCCcHHHHHHHHcCCCchhhhhhhhhhhhhHhhcCc---CCeeEEcCCCCCCCCcchhHhHhHHHHHHHHHHHhCCCce
Q 014150 20 LSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWAT---VPHLVFDNHCVSTSSQDQTFIKNKLVNIVDHVLLLHNGPI 96 (430)
Q Consensus 20 is~LPdelL~~Ils~L~~~d~~r~s~vskrWr~lw~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~l 96 (430)
+..|||||+..||+.|+.+|.++++.|||||.++-.. ...++....... . +...+++ ++. |
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~---------p----~~l~~l~-~rg--V 161 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIH---------P----DVLGRLL-SRG--V 161 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccC---------h----hHHHHHH-hCC--e
Confidence 6789999999999999999999999999999875221 111222222111 1 1222222 332 5
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCC--CCCCCCCcceE
Q 014150 97 LKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPS--TFKGFRNLKSL 174 (430)
Q Consensus 97 ~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L 174 (430)
..|++........+.+.... ..+..++++++.......-.+.-.+..|.+|+.|+|.|+.+.++. ....-.+|+.|
T Consensus 162 ~v~Rlar~~~~~prlae~~~--~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~l 239 (419)
T KOG2120|consen 162 IVFRLARSFMDQPRLAEHFS--PFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRL 239 (419)
T ss_pred EEEEcchhhhcCchhhhhhh--hhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceee
Confidence 55555543222222222211 234568888887655444455556778999999999999998853 34467899999
Q ss_pred EeeeEE-echhhHHHHhhcCccccceEeeccCCceEE-----EEeCCCcceEEEeccccce-------eeccCCCceEEE
Q 014150 175 DLQHIT-LSQDVFENLISSSPTLERLTLMNFDGFTHL-----NIDAPNLQFFDIGGVFDDV-------TFENTFHLALVS 241 (430)
Q Consensus 175 ~L~~~~-~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l-----~i~~p~L~~L~l~~~~~~~-------~~~~~p~L~~l~ 241 (430)
+|+.+. ++..++..++++|..|.+|.|++|...... .--+++|+.|.+.|+...+ ....+|+|.+|+
T Consensus 240 nlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LD 319 (419)
T KOG2120|consen 240 NLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLD 319 (419)
T ss_pred ccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeec
Confidence 999987 888889999999999999999999754432 1236899999999864322 234799999999
Q ss_pred EEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHH
Q 014150 242 IGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALC 321 (430)
Q Consensus 242 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 321 (430)
++++... .+.+...+..++.|++|.++.++...-..-.... ..|.|.+|++..+..+. .+.-
T Consensus 320 LSD~v~l----------~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~----s~psl~yLdv~g~vsdt----~mel 381 (419)
T KOG2120|consen 320 LSDSVML----------KNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELN----SKPSLVYLDVFGCVSDT----TMEL 381 (419)
T ss_pred ccccccc----------CchHHHHHHhcchheeeehhhhcCCChHHeeeec----cCcceEEEEeccccCch----HHHH
Confidence 9877654 2244556778899999999887643211111111 35689999996654443 3566
Q ss_pred HHhcCCCccEEE
Q 014150 322 LLRSSPNLQELE 333 (430)
Q Consensus 322 ll~~~p~L~~L~ 333 (430)
+.+.||+|+.-.
T Consensus 382 ~~e~~~~lkin~ 393 (419)
T KOG2120|consen 382 LKEMLSHLKINC 393 (419)
T ss_pred HHHhCccccccc
Confidence 778889877543
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.63 E-value=1.4e-17 Score=151.80 Aligned_cols=341 Identities=17% Similarity=0.182 Sum_probs=204.1
Q ss_pred CCcHHHHHHHHcCCCchhhhhhhhhhhhhHhh------cCcCCeeEEcCCCCCCCCcchhHhHhHHHHHHHHHHHhCCCc
Q 014150 22 SLPAHVIDQILSQLPIRDAVRTSVLSKKWRYK------WATVPHLVFDNHCVSTSSQDQTFIKNKLVNIVDHVLLLHNGP 95 (430)
Q Consensus 22 ~LPdelL~~Ils~L~~~d~~r~s~vskrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~ 95 (430)
.||.|++..|||+|+++..+|++++|+-|..+ |..+.-.+|..+.. ...|..++.+-.+.
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~--------------g~VV~~~~~Rcgg~ 139 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVD--------------GGVVENMISRCGGF 139 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCC--------------CcceehHhhhhccc
Confidence 58999999999999999999999999999874 43333222221111 12233333333366
Q ss_pred eeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCC-CcccCCCcccccCceeEEEEeeeeecCCC----CCCCCCC
Q 014150 96 ILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKG-QRYKVPSSLFLCQNLIHLELFNCLLKPPS----TFKGFRN 170 (430)
Q Consensus 96 l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~~~~~~----~~~~~~~ 170 (430)
++.++++.+.......+.... ...+++++|.+..+.- ....+-.....|++|++|+|..|...... -..+||+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~--~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFA--SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccCCcchhhHHh--hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 788888887666555554432 2456777776654431 11112222234677777777765322111 1125777
Q ss_pred cceEEeeeEE-echhhHHHHhhcCccccceEeeccCCceE-----EEEeCCCcceEEEeccc--ccee---e-ccCCCce
Q 014150 171 LKSLDLQHIT-LSQDVFENLISSSPTLERLTLMNFDGFTH-----LNIDAPNLQFFDIGGVF--DDVT---F-ENTFHLA 238 (430)
Q Consensus 171 L~~L~L~~~~-~~~~~l~~l~s~cp~Le~L~l~~c~~~~~-----l~i~~p~L~~L~l~~~~--~~~~---~-~~~p~L~ 238 (430)
|+.|+++++. +.+..+..+..+|..++++.+++|..... +.-..+-+..+++..+. .+.. + ..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 7777777776 66666777777777777777776654321 11122333333322221 0000 0 1245556
Q ss_pred EEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHH
Q 014150 239 LVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLA 318 (430)
Q Consensus 239 ~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 318 (430)
.++.+.+... ....+..+..++++|+.|.++.+..- .......+...++.|+.|++..+....+. .
T Consensus 298 ~l~~s~~t~~---------~d~~l~aLg~~~~~L~~l~l~~c~~f---sd~~ft~l~rn~~~Le~l~~e~~~~~~d~--t 363 (483)
T KOG4341|consen 298 VLCYSSCTDI---------TDEVLWALGQHCHNLQVLELSGCQQF---SDRGFTMLGRNCPHLERLDLEECGLITDG--T 363 (483)
T ss_pred hhcccCCCCC---------chHHHHHHhcCCCceEEEeccccchh---hhhhhhhhhcCChhhhhhcccccceehhh--h
Confidence 6655544432 33455678889999999999876531 11112233446778999999766554432 5
Q ss_pred HHHHHhcCCCccEEEEeecCCCCcccccccceecc--cccccccCceEEEEEeeecCccHHHHHHHHHccCCCcceEEEe
Q 014150 319 ALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVD--HWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIK 396 (430)
Q Consensus 319 l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~--~~~~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~ 396 (430)
+..+-.+||.|++|.++.+......+ +.. ...|.+..|..+++.+...... + +-..+.++++||++.+.
T Consensus 364 L~sls~~C~~lr~lslshce~itD~g------i~~l~~~~c~~~~l~~lEL~n~p~i~d--~-~Le~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 364 LASLSRNCPRLRVLSLSHCELITDEG------IRHLSSSSCSLEGLEVLELDNCPLITD--A-TLEHLSICRNLERIELI 434 (483)
T ss_pred HhhhccCCchhccCChhhhhhhhhhh------hhhhhhccccccccceeeecCCCCchH--H-HHHHHhhCcccceeeee
Confidence 77788999999999999765432110 011 1346788999999988765321 2 22456788999999998
Q ss_pred ecCCC
Q 014150 397 PASLE 401 (430)
Q Consensus 397 ~~~~~ 401 (430)
.+..-
T Consensus 435 ~~q~v 439 (483)
T KOG4341|consen 435 DCQDV 439 (483)
T ss_pred chhhh
Confidence 87643
No 3
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=99.24 E-value=2.1e-11 Score=87.49 Aligned_cols=69 Identities=33% Similarity=0.602 Sum_probs=61.6
Q ss_pred ccccCceEEEEEeeecCccHHHHHHHHHccCCCcceEEEeecC--CCchhHHHHHhhhcccccCCcEEEEe
Q 014150 357 SLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPAS--LEGGWDLIKELLRFRRASARAEIIYL 425 (430)
Q Consensus 357 ~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~~~~--~~~~~~~~~~l~~~~r~s~~~~~~~~ 425 (430)
|..++|+.|+|.+|.|...|+++++||++||+.||+|+|.... .+....+.++|..++|+|+.|++.|.
T Consensus 2 cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~~i~~~L~~~~~aS~~c~i~~~ 72 (72)
T smart00579 2 CLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDEKLEILKELLSLPRASSSCQVQFL 72 (72)
T ss_pred cchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccHHHHHHHHHHhCcCCCCceEEEeC
Confidence 6788999999999999999999999999999999999999765 33446778899999999999999874
No 4
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=98.93 E-value=1.2e-09 Score=71.95 Aligned_cols=42 Identities=48% Similarity=0.772 Sum_probs=40.9
Q ss_pred ccccccCceEEEEEeeecCccHHHHHHHHHccCCCcceEEEe
Q 014150 355 WTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIK 396 (430)
Q Consensus 355 ~~~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~ 396 (430)
++|..++|+.|++.+|.|...|+++++|+++||+.||+|+|.
T Consensus 9 p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 9 PECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred ccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 889999999999999999999999999999999999999996
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.81 E-value=5.9e-09 Score=113.27 Aligned_cols=122 Identities=20% Similarity=0.178 Sum_probs=68.8
Q ss_pred CCceEEEEEecCCCcccCCCccc-ccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceE
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLF-LCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT 200 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~ 200 (430)
+.++.|++..... ...+|..++ .+++|++|+|++|.+........+++|++|+|+++.+... +...+..+++|+.|+
T Consensus 93 ~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~ 170 (968)
T PLN00113 93 PYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLD 170 (968)
T ss_pred CCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccccc-CChHHhcCCCCCEEE
Confidence 5677776653321 124666555 6777888888877765433334677777777777766533 334456677777777
Q ss_pred eeccCCceEE---EEeCCCcceEEEecccc----ceeeccCCCceEEEEEEE
Q 014150 201 LMNFDGFTHL---NIDAPNLQFFDIGGVFD----DVTFENTFHLALVSIGLY 245 (430)
Q Consensus 201 l~~c~~~~~l---~i~~p~L~~L~l~~~~~----~~~~~~~p~L~~l~i~~~ 245 (430)
+.++.-...+ --..++|++|++.++.- ...+.++++|+.|+++.+
T Consensus 171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222 (968)
T ss_pred CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence 7765422111 11235666666654321 112345566666666543
No 6
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.80 E-value=3.5e-09 Score=68.81 Aligned_cols=35 Identities=37% Similarity=0.627 Sum_probs=31.0
Q ss_pred cCCCcHHHHHHHHcCCCchhhhhhhhhhhhhHhhc
Q 014150 20 LSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKW 54 (430)
Q Consensus 20 is~LPdelL~~Ils~L~~~d~~r~s~vskrWr~lw 54 (430)
|+.||+|++.+||++|+.+|.++++.|||+|+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999865
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.76 E-value=6.1e-09 Score=98.21 Aligned_cols=248 Identities=17% Similarity=0.080 Sum_probs=121.7
Q ss_pred CceEEEEEecCCC---cccCCCcccccCceeEEEEeeeeecC-C-------CCCCCCCCcceEEeeeEEechh---hHHH
Q 014150 123 CVKEFILEIWKGQ---RYKVPSSLFLCQNLIHLELFNCLLKP-P-------STFKGFRNLKSLDLQHITLSQD---VFEN 188 (430)
Q Consensus 123 ~l~~l~l~~~~~~---~~~lp~~~~~~~~L~~L~L~~~~~~~-~-------~~~~~~~~L~~L~L~~~~~~~~---~l~~ 188 (430)
+++++.+..+... ...++..+...++|+.|+++++.+.. + ..+..+++|+.|+|.++.+... .+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 4666666544321 11234444455667777776665431 1 1233466777777766665422 2223
Q ss_pred HhhcCccccceEeeccCCceEEEEeCCCcceEEEecccc--ceeeccC-CCceEEEEEEEeeccccccCCCCCcchHHHH
Q 014150 189 LISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFD--DVTFENT-FHLALVSIGLYVNVKNDQAMGPGNSCKLLRF 265 (430)
Q Consensus 189 l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l~~~~~--~~~~~~~-p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~ 265 (430)
+..+ ++|++|.+.+|.... .... ...+..+ ++|+++++..+..... ....+...
T Consensus 104 l~~~-~~L~~L~ls~~~~~~---------------~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-------~~~~~~~~ 160 (319)
T cd00116 104 LLRS-SSLQELKLNNNGLGD---------------RGLRLLAKGLKDLPPALEKLVLGRNRLEGA-------SCEALAKA 160 (319)
T ss_pred Hhcc-CcccEEEeeCCccch---------------HHHHHHHHHHHhCCCCceEEEcCCCcCCch-------HHHHHHHH
Confidence 3333 456666666553210 0000 0112334 6677777765442200 11223445
Q ss_pred hccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccc
Q 014150 266 FVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGV 345 (430)
Q Consensus 266 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~ 345 (430)
+..+++|++|+++.+.+...........++ .+++|++|+++.+.........+...+..+|+|+.|++.++.-...
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~--- 236 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLK-ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA--- 236 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHH-hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH---
Confidence 666778888888776544211100000111 2357888888655433334445666677788888888887653210
Q ss_pred cccceecccccccccCceEEEEEeeecCc-cHHHHHHHHHccCCCcceEEEeecC
Q 014150 346 LTNFWEVDHWTSLFSQLRMVKIVGISGIR-SELEFIKFVLSNSPVLETMTIKPAS 399 (430)
Q Consensus 346 ~~~~w~~~~~~~~~~~L~~v~i~~~~~~~-~e~~~~~~il~~~~~L~~l~i~~~~ 399 (430)
..... ..........|+.+.+.+..-.. ....+++ .+.+.+.|+.+.+..+.
T Consensus 237 ~~~~l-~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~-~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 237 GAAAL-ASALLSPNISLLTLSLSCNDITDDGAKDLAE-VLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHH-HHHHhccCCCceEEEccCCCCCcHHHHHHHH-HHhcCCCccEEECCCCC
Confidence 00000 00000013577777776543221 2333444 34555788888887765
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.67 E-value=1.1e-08 Score=96.55 Aligned_cols=64 Identities=23% Similarity=0.262 Sum_probs=39.4
Q ss_pred cccccCceeEEEEeeeeecC--CCCCCCC---CCcceEEeeeEEechhhHHH---HhhcC-ccccceEeeccC
Q 014150 142 SLFLCQNLIHLELFNCLLKP--PSTFKGF---RNLKSLDLQHITLSQDVFEN---LISSS-PTLERLTLMNFD 205 (430)
Q Consensus 142 ~~~~~~~L~~L~L~~~~~~~--~~~~~~~---~~L~~L~L~~~~~~~~~l~~---l~s~c-p~Le~L~l~~c~ 205 (430)
.+..+++|+.|++++|.+.. +..+..+ ++|+.|++.++.+++..... .+..+ ++|++|.+.+|.
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 34456788888888876642 1122222 45888888888776543333 34445 777888877764
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.67 E-value=2.8e-08 Score=108.01 Aligned_cols=81 Identities=20% Similarity=0.155 Sum_probs=49.0
Q ss_pred CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccce
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL 199 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L 199 (430)
.+++.|++..+.. ...+|..+..+++|+.|+|++|.+.. |..+.++++|+.|+|.++.+.+. +...+..+++|+.|
T Consensus 188 ~~L~~L~L~~n~l-~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L 265 (968)
T PLN00113 188 TSLEFLTLASNQL-VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP-IPSSLGNLKNLQYL 265 (968)
T ss_pred cCCCeeeccCCCC-cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc-cChhHhCCCCCCEE
Confidence 4667777654321 12356666666777777777776543 44456677777777777765433 33445566677777
Q ss_pred Eeecc
Q 014150 200 TLMNF 204 (430)
Q Consensus 200 ~l~~c 204 (430)
.+.++
T Consensus 266 ~L~~n 270 (968)
T PLN00113 266 FLYQN 270 (968)
T ss_pred ECcCC
Confidence 76655
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.44 E-value=5.1e-08 Score=93.66 Aligned_cols=104 Identities=18% Similarity=0.173 Sum_probs=58.3
Q ss_pred CceeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCc
Q 014150 94 GPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNL 171 (430)
Q Consensus 94 ~~l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L 171 (430)
+.+..+.+......+ |.+- ...+-+-++.+++.......+..|.. -.-.+++.|+|++|++.. ...|.++.+|
T Consensus 125 ghl~~L~L~~N~I~s---v~se-~L~~l~alrslDLSrN~is~i~~~sf-p~~~ni~~L~La~N~It~l~~~~F~~lnsL 199 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISS---VTSE-ELSALPALRSLDLSRNLISEIPKPSF-PAKVNIKKLNLASNRITTLETGHFDSLNSL 199 (873)
T ss_pred cceeEEeeecccccc---ccHH-HHHhHhhhhhhhhhhchhhcccCCCC-CCCCCceEEeeccccccccccccccccchh
Confidence 457777777643222 2111 00112346666665433222222221 112678888888887765 3456777788
Q ss_pred ceEEeeeEEechhhHHHHhhcCccccceEeec
Q 014150 172 KSLDLQHITLSQDVFENLISSSPTLERLTLMN 203 (430)
Q Consensus 172 ~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~ 203 (430)
.+|.|+.++++.-. ...+.+.|+||.|.|..
T Consensus 200 ~tlkLsrNrittLp-~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 200 LTLKLSRNRITTLP-QRSFKRLPKLESLDLNR 230 (873)
T ss_pred eeeecccCcccccC-HHHhhhcchhhhhhccc
Confidence 88888888776432 34566678888887774
No 11
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.41 E-value=8.4e-08 Score=62.68 Aligned_cols=37 Identities=41% Similarity=0.675 Sum_probs=31.3
Q ss_pred cCCCcHHHHHHHHcCCCchhhhhhhhhhhhhHhhcCc
Q 014150 20 LSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWAT 56 (430)
Q Consensus 20 is~LPdelL~~Ils~L~~~d~~r~s~vskrWr~lw~~ 56 (430)
+++||+|++.+||++|+.+|.++++.|||+|+.+..+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 6789999999999999999999999999999997654
No 12
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.28 E-value=6.9e-07 Score=56.07 Aligned_cols=34 Identities=35% Similarity=0.744 Sum_probs=31.5
Q ss_pred CcHHHHHHHHcCCCchhhhhhhhhhhhhHhhcCc
Q 014150 23 LPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWAT 56 (430)
Q Consensus 23 LPdelL~~Ils~L~~~d~~r~s~vskrWr~lw~~ 56 (430)
||+|++..||++|+.+|.++++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987543
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.26 E-value=8e-08 Score=92.37 Aligned_cols=79 Identities=20% Similarity=0.216 Sum_probs=37.7
Q ss_pred CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccce
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL 199 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L 199 (430)
.++++|.+........+... +.+..+|.+|+|+.|++.. +..|.++|.|+.|+|..+.+.--. ..-+.+.|+|+.|
T Consensus 173 ~ni~~L~La~N~It~l~~~~-F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive-~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGH-FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE-GLTFQGLPSLQNL 250 (873)
T ss_pred CCceEEeecccccccccccc-ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh-hhhhcCchhhhhh
Confidence 35666666544332222211 1223466666666666543 234555666666666666543110 1113445555555
Q ss_pred Eee
Q 014150 200 TLM 202 (430)
Q Consensus 200 ~l~ 202 (430)
.+.
T Consensus 251 klq 253 (873)
T KOG4194|consen 251 KLQ 253 (873)
T ss_pred hhh
Confidence 554
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.24 E-value=2.8e-06 Score=93.45 Aligned_cols=81 Identities=20% Similarity=0.229 Sum_probs=38.9
Q ss_pred ccccCceeEEEEeeee-ecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE--EeCCCcce
Q 014150 143 LFLCQNLIHLELFNCL-LKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN--IDAPNLQF 219 (430)
Q Consensus 143 ~~~~~~L~~L~L~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~--i~~p~L~~ 219 (430)
+..+++|+.|+|+++. +...+.+..+++|++|+|.+|..-. .+...+..+++|+.|.+.+|..+..+. +..++|+.
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~ 708 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLV-ELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYR 708 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcc-ccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCE
Confidence 3344555555555442 2222234455666666666554211 123334455666666666665443322 12345555
Q ss_pred EEEec
Q 014150 220 FDIGG 224 (430)
Q Consensus 220 L~l~~ 224 (430)
|.+.|
T Consensus 709 L~Lsg 713 (1153)
T PLN03210 709 LNLSG 713 (1153)
T ss_pred EeCCC
Confidence 55554
No 15
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.20 E-value=1.7e-06 Score=78.50 Aligned_cols=165 Identities=22% Similarity=0.211 Sum_probs=100.1
Q ss_pred CCCCcceEEeeeEEech---hhHHHHhhcCccccceEeeccCCc----------------eEEEEeCCCcceEEEeccc-
Q 014150 167 GFRNLKSLDLQHITLSQ---DVFENLISSSPTLERLTLMNFDGF----------------THLNIDAPNLQFFDIGGVF- 226 (430)
Q Consensus 167 ~~~~L~~L~L~~~~~~~---~~l~~l~s~cp~Le~L~l~~c~~~----------------~~l~i~~p~L~~L~l~~~~- 226 (430)
.+|.|++|+|+.+.+.. ..+..++++|..|++|.+.+|-.. ....-..|.|+.+....+.
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 44555555555555432 356778888888888888887311 1122345788888775421
Q ss_pred ---cc----eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCcccc
Q 014150 227 ---DD----VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCV 299 (430)
Q Consensus 227 ---~~----~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 299 (430)
+. ..+...|.|+.+.+.......- ....+..-+..+++|+.|+|..+++...........++ .++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~e-------G~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~-s~~ 241 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPE-------GVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALS-SWP 241 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCc-------hhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhc-ccc
Confidence 11 1245668888888865443210 11344566788999999999988765321111111233 567
Q ss_pred ccceeEEEEeeCChhh-HHHHHHHHhcCCCccEEEEeecCC
Q 014150 300 DLNYLSIRINFNDLEE-NLAALCLLRSSPNLQELEMLARPE 339 (430)
Q Consensus 300 ~L~~L~l~~~~~~~~~-~~~l~~ll~~~p~L~~L~l~~~~~ 339 (430)
+|+.|+++.|...... ..-+..+-+..|+|+.|.+.++..
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred hheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 8888888776543332 223445667789999999988764
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.18 E-value=4.2e-06 Score=92.01 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=51.8
Q ss_pred cCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEE---eCCCcceEE
Q 014150 146 CQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI---DAPNLQFFD 221 (430)
Q Consensus 146 ~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i---~~p~L~~L~ 221 (430)
..+|+.|++.++.+.. +.++..+++|+.|+|.++..-.. +.. ++.+++|+.|.+.+|..+..+.- ..++|+.|.
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~-ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKE-IPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCc-CCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 3556666666655443 33445667777777765531111 111 44567777777777765443321 235666777
Q ss_pred Eecccc--cee-eccCCCceEEEEEEEe
Q 014150 222 IGGVFD--DVT-FENTFHLALVSIGLYV 246 (430)
Q Consensus 222 l~~~~~--~~~-~~~~p~L~~l~i~~~~ 246 (430)
+.++.. .+. ..++++|+.|++..|.
T Consensus 688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 688 MSRCENLEILPTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred CCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence 665321 111 1145666666666543
No 17
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=6.2e-06 Score=73.34 Aligned_cols=225 Identities=17% Similarity=0.171 Sum_probs=138.4
Q ss_pred ceeEEEEeeeeecCCCCC---C-CCCCcceEEeeeEEech-hhHHHHhhcCccccceEeeccCC---ceEEEEeCCCcce
Q 014150 148 NLIHLELFNCLLKPPSTF---K-GFRNLKSLDLQHITLSQ-DVFENLISSSPTLERLTLMNFDG---FTHLNIDAPNLQF 219 (430)
Q Consensus 148 ~L~~L~L~~~~~~~~~~~---~-~~~~L~~L~L~~~~~~~-~~l~~l~s~cp~Le~L~l~~c~~---~~~l~i~~p~L~~ 219 (430)
.+.-|.+.++.++....+ + .+..++.|+|.++.+++ +.+..++.+.|.|+.|.|+...- +..+.....+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 344556666666553322 1 57889999999999864 67889999999999999985322 2223334568999
Q ss_pred EEEeccccc-----eeeccCCCceEEEEEEEeec---cccccCC---------------CCCcchHHHHhccCCCccEEE
Q 014150 220 FDIGGVFDD-----VTFENTFHLALVSIGLYVNV---KNDQAMG---------------PGNSCKLLRFFVHLPHIRRLE 276 (430)
Q Consensus 220 L~l~~~~~~-----~~~~~~p~L~~l~i~~~~~~---~~~~~~~---------------~~~~~~~~~~l~~~~~L~~L~ 276 (430)
|-+.|..-+ ..+.++|.++++.++..... ......+ ...+.+..++...+||+..+.
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 999885322 24568899999988765221 1100000 001223456667789999999
Q ss_pred EeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceeccccc
Q 014150 277 IQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWT 356 (430)
Q Consensus 277 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~ 356 (430)
++.+.++..+.+.... .|+.+.-|++..... +.+.++ .-|..+|.|..|.+..++--. ...+-++..
T Consensus 206 v~e~PlK~~s~ek~se----~~p~~~~LnL~~~~i--dswasv-D~Ln~f~~l~dlRv~~~Pl~d----~l~~~err~-- 272 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGSE----PFPSLSCLNLGANNI--DSWASV-DALNGFPQLVDLRVSENPLSD----PLRGGERRF-- 272 (418)
T ss_pred eecCcccchhhcccCC----CCCcchhhhhccccc--ccHHHH-HHHcCCchhheeeccCCcccc----cccCCcceE--
Confidence 9999888766654433 455666777743322 222233 357889999999998876431 111101111
Q ss_pred ccccCceEEEEEe---ee---cCccHHHHHHHHHc
Q 014150 357 SLFSQLRMVKIVG---IS---GIRSELEFIKFVLS 385 (430)
Q Consensus 357 ~~~~~L~~v~i~~---~~---~~~~e~~~~~~il~ 385 (430)
-...+|..|++.+ +. ...+|+.|++|.+.
T Consensus 273 llIaRL~~v~vLNGskIss~er~dSEr~fVRyym~ 307 (418)
T KOG2982|consen 273 LLIARLTKVQVLNGSKISSRERKDSERRFVRYYMS 307 (418)
T ss_pred EEEeeccceEEecCcccchhhhhhhHHHHHHHHhh
Confidence 1234555555554 22 23688899999887
No 18
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=5.6e-07 Score=83.81 Aligned_cols=203 Identities=18% Similarity=0.121 Sum_probs=94.5
Q ss_pred CceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCC----CCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150 123 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPS----TFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 198 (430)
Q Consensus 123 ~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~ 198 (430)
+++++.++.+.......-.-.-.|++++.|+|+.+-+.... -...+|+|+.|+|+.+.+.-..-.......++|+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 45555555443321111122345677777777766554311 11256777777777766321100011113556666
Q ss_pred eEeeccCC----ceEEEEeCCCcceEEEecccc----ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCC
Q 014150 199 LTLMNFDG----FTHLNIDAPNLQFFDIGGVFD----DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLP 270 (430)
Q Consensus 199 L~l~~c~~----~~~l~i~~p~L~~L~l~~~~~----~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (430)
|.|..|.- +..+....|+|+.|.+.+... .....-...|++|+++.....+..+ ....+.+|
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~----------~~~~~~l~ 271 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ----------GYKVGTLP 271 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc----------cccccccc
Confidence 77776632 222344566777666655421 1112234456666665544332210 12245666
Q ss_pred CccEEEEeeeeeehhhcccC-CCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150 271 HIRRLEIQSYFLKYLAIGNV-PSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 338 (430)
Q Consensus 271 ~L~~L~l~~~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 338 (430)
.|+-|.++.+.+..+...+. .......|++|++|.+...... ++..+ .=++..++|+.|.+..+.
T Consensus 272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~--~w~sl-~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR--DWRSL-NHLRTLENLKHLRITLNY 337 (505)
T ss_pred chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc--ccccc-chhhccchhhhhhccccc
Confidence 77777776665544322211 0011125667777777432111 11111 123445666666655543
No 19
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=1.1e-06 Score=78.05 Aligned_cols=156 Identities=16% Similarity=0.164 Sum_probs=86.9
Q ss_pred CcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE---EeCCCcceEEEeccc------cceeeccCCCceEE
Q 014150 170 NLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN---IDAPNLQFFDIGGVF------DDVTFENTFHLALV 240 (430)
Q Consensus 170 ~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~---i~~p~L~~L~l~~~~------~~~~~~~~p~L~~l 240 (430)
.|+.|+|+...++...+..+++.|..|+.|.|.+..--..+. ....+|+.|++.++. ....+.+|..|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 355555555555555566666666666666655432111100 112345555554432 23346788889999
Q ss_pred EEEEEeeccccccCCCCCcchHHHHhccC-CCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHH
Q 014150 241 SIGLYVNVKNDQAMGPGNSCKLLRFFVHL-PHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAA 319 (430)
Q Consensus 241 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 319 (430)
++++|+.. .+.+..+.... ++++.|.|++..-. +... ....+...+|+|.+|+++-+..-.+ ++
T Consensus 266 NlsWc~l~----------~~~Vtv~V~hise~l~~LNlsG~rrn-l~~s-h~~tL~~rcp~l~~LDLSD~v~l~~---~~ 330 (419)
T KOG2120|consen 266 NLSWCFLF----------TEKVTVAVAHISETLTQLNLSGYRRN-LQKS-HLSTLVRRCPNLVHLDLSDSVMLKN---DC 330 (419)
T ss_pred CchHhhcc----------chhhhHHHhhhchhhhhhhhhhhHhh-hhhh-HHHHHHHhCCceeeeccccccccCc---hH
Confidence 98887642 22333444444 78888888765321 1111 1122334678888888865533323 34
Q ss_pred HHHHhcCCCccEEEEeecCCC
Q 014150 320 LCLLRSSPNLQELEMLARPEE 340 (430)
Q Consensus 320 ~~ll~~~p~L~~L~l~~~~~~ 340 (430)
...+-.+|.|++|+++.|...
T Consensus 331 ~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 331 FQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred HHHHHhcchheeeehhhhcCC
Confidence 445666888888888887643
No 20
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=1.4e-06 Score=81.17 Aligned_cols=180 Identities=18% Similarity=0.056 Sum_probs=114.5
Q ss_pred hCCceEEEEEecCCCcc-cCCCcccccCceeEEEEeeeeecCCCCC---CCCCCcceEEeeeEEechhhHHHHhhcCccc
Q 014150 121 RSCVKEFILEIWKGQRY-KVPSSLFLCQNLIHLELFNCLLKPPSTF---KGFRNLKSLDLQHITLSQDVFENLISSSPTL 196 (430)
Q Consensus 121 ~~~l~~l~l~~~~~~~~-~lp~~~~~~~~L~~L~L~~~~~~~~~~~---~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~L 196 (430)
..++++|++...--..+ .+-..+...++|+.|+|+.|.+..+.+- .-++.|++|.|.+|.++..++..++..||+|
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 46788887753211111 1222233568999999999988764321 2589999999999999999999999999999
Q ss_pred cceEeeccCCceEEEEe---CCCcceEEEeccc----cce-eeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhcc
Q 014150 197 ERLTLMNFDGFTHLNID---APNLQFFDIGGVF----DDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVH 268 (430)
Q Consensus 197 e~L~l~~c~~~~~l~i~---~p~L~~L~l~~~~----~~~-~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (430)
+.|.+........-... ...|+.|++.+.. ... ....+|.|..|.+..+...+... ++... ......
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~----~d~~s-~~kt~~ 299 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAE----PDVES-LDKTHT 299 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcC----CCccc-hhhhcc
Confidence 99999976432111111 2478888888732 222 34578888888887665433221 12221 222467
Q ss_pred CCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEe
Q 014150 269 LPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRIN 309 (430)
Q Consensus 269 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 309 (430)
+++|+.|.+..+.+..+..-.... ..+||++|.+...
T Consensus 300 f~kL~~L~i~~N~I~~w~sl~~l~----~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRDWRSLNHLR----TLENLKHLRITLN 336 (505)
T ss_pred cccceeeecccCccccccccchhh----ccchhhhhhcccc
Confidence 899999999877664322211111 3457777776443
No 21
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.82 E-value=7.8e-06 Score=74.27 Aligned_cols=154 Identities=12% Similarity=0.078 Sum_probs=95.9
Q ss_pred eccCCCceEEEEEEEeeccccccCCCCCcch---------HHHHhccCCCccEEEEeeeeeehhhcccCCCCCCcccccc
Q 014150 231 FENTFHLALVSIGLYVNVKNDQAMGPGNSCK---------LLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDL 301 (430)
Q Consensus 231 ~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L 301 (430)
+.++..|++|.+..|.-... -+.. ..+....-++|+++..+.+.+..-..- ......+..+.|
T Consensus 116 l~s~~~L~eL~L~N~Glg~~-------ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~-~~A~~~~~~~~l 187 (382)
T KOG1909|consen 116 LSSCTDLEELYLNNCGLGPE-------AGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT-ALAEAFQSHPTL 187 (382)
T ss_pred HHhccCHHHHhhhcCCCChh-------HHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH-HHHHHHHhcccc
Confidence 45688899999987654311 1111 233455678899999988876531110 000011134578
Q ss_pred ceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCC--CcccccccceecccccccccCceEEEEEeee-cCccHHH
Q 014150 302 NYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEE--TGIGVLTNFWEVDHWTSLFSQLRMVKIVGIS-GIRSELE 378 (430)
Q Consensus 302 ~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~--~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~-~~~~e~~ 378 (430)
+.+.+.........+..+..-+.+||+|+.|+|+.+... +....+ ..-+..++|+++.+.++- .++.-.+
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La-------kaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA-------KALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH-------HHhcccchheeecccccccccccHHH
Confidence 888886655555555677788999999999999988754 111100 011244567777777652 3456678
Q ss_pred HHHHHHccCCCcceEEEeecC
Q 014150 379 FIKFVLSNSPVLETMTIKPAS 399 (430)
Q Consensus 379 ~~~~il~~~~~L~~l~i~~~~ 399 (430)
++..+-+.+|.|+.+.+.++.
T Consensus 261 ~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHHHhccCCCCceeccCcch
Confidence 888888888888888877654
No 22
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.74 E-value=5.9e-07 Score=83.18 Aligned_cols=203 Identities=16% Similarity=0.183 Sum_probs=118.9
Q ss_pred CCceEEEEEecCCCcc-cCCCcccccCceeEEEEeeeeecCCCCC----CCCCCcceEEeeeEE-echhhHHHHhhcCcc
Q 014150 122 SCVKEFILEIWKGQRY-KVPSSLFLCQNLIHLELFNCLLKPPSTF----KGFRNLKSLDLQHIT-LSQDVFENLISSSPT 195 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~-~lp~~~~~~~~L~~L~L~~~~~~~~~~~----~~~~~L~~L~L~~~~-~~~~~l~~l~s~cp~ 195 (430)
.-++++.+..+....+ .+-.....|++++.|.+.+|.......+ ..|++|+.|+|..|. +++..+..+..+||+
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4578888876654333 2333445789999999888864332221 268999999999966 777788888889999
Q ss_pred ccceEeeccCCceEEEE-----eCCCcceEEEeccccc--eee----ccCCCceEEEEEEEeeccccccCCCCCcchHHH
Q 014150 196 LERLTLMNFDGFTHLNI-----DAPNLQFFDIGGVFDD--VTF----ENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLR 264 (430)
Q Consensus 196 Le~L~l~~c~~~~~l~i-----~~p~L~~L~l~~~~~~--~~~----~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~ 264 (430)
|+.|.+++|+.++.-.+ .+.+++.+...|+... -.+ ..++.+.++++..+... ++..+..
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~l---------TD~~~~~ 288 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQL---------TDEDLWL 288 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccc---------cchHHHH
Confidence 99999999976654211 2334555544553221 001 13444555554444332 2233444
Q ss_pred HhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150 265 FFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 338 (430)
Q Consensus 265 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 338 (430)
+-.++..|+.|..++..... ......+...+++|+.|.+..+..-.+ .++..+-++||.|+.|+++.+.
T Consensus 289 i~~~c~~lq~l~~s~~t~~~---d~~l~aLg~~~~~L~~l~l~~c~~fsd--~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDIT---DEVLWALGQHCHNLQVLELSGCQQFSD--RGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred HhhhhhHhhhhcccCCCCCc---hHHHHHHhcCCCceEEEeccccchhhh--hhhhhhhcCChhhhhhcccccc
Confidence 44556667777776554310 011112233456788777755532111 1456667788888888777654
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.65 E-value=1.2e-05 Score=67.78 Aligned_cols=78 Identities=27% Similarity=0.236 Sum_probs=26.5
Q ss_pred CceEEEEEecCCCcccCCCccc-ccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150 123 CVKEFILEIWKGQRYKVPSSLF-LCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 201 (430)
Q Consensus 123 ~l~~l~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l 201 (430)
++++|+++......+ ..+. .+.+|+.|+|++|.+..-.++..+++|++|+++++.++.-. ..+...||+|++|.+
T Consensus 20 ~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYL 95 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-
T ss_pred ccccccccccccccc---cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEEC
Confidence 567777765443222 1233 45789999999999887677888999999999999886421 223456899999998
Q ss_pred ecc
Q 014150 202 MNF 204 (430)
Q Consensus 202 ~~c 204 (430)
.+.
T Consensus 96 ~~N 98 (175)
T PF14580_consen 96 SNN 98 (175)
T ss_dssp TTS
T ss_pred cCC
Confidence 853
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.60 E-value=1e-06 Score=71.97 Aligned_cols=156 Identities=22% Similarity=0.215 Sum_probs=103.2
Q ss_pred ccccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeCCCcceEE
Q 014150 143 LFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFD 221 (430)
Q Consensus 143 ~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~ 221 (430)
+++....+.|.|+++.+.. |+....+.+|+.|++.++.+. .+..-+++.|.|+.|.+.- ..+.+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgm----nrl~~--------- 93 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGM----NRLNI--------- 93 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecch----hhhhc---------
Confidence 5677888999999998765 566778999999999998775 3455578888888887761 11111
Q ss_pred EeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCcccccc
Q 014150 222 IGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDL 301 (430)
Q Consensus 222 l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L 301 (430)
..--|+.+|.|+.|++.+....... -.++ +-.+..|+.|.++.+..+ .+|+...+|
T Consensus 94 -----lprgfgs~p~levldltynnl~e~~------lpgn----ff~m~tlralyl~dndfe---------~lp~dvg~l 149 (264)
T KOG0617|consen 94 -----LPRGFGSFPALEVLDLTYNNLNENS------LPGN----FFYMTTLRALYLGDNDFE---------ILPPDVGKL 149 (264)
T ss_pred -----CccccCCCchhhhhhcccccccccc------CCcc----hhHHHHHHHHHhcCCCcc---------cCChhhhhh
Confidence 1113677899999999876543221 1112 223455677778776554 334455567
Q ss_pred ceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150 302 NYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 339 (430)
Q Consensus 302 ~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 339 (430)
+.|++-.-- .+++..++.=++....|+.|+|+++.-
T Consensus 150 t~lqil~lr--dndll~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 150 TNLQILSLR--DNDLLSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred cceeEEeec--cCchhhCcHHHHHHHHHHHHhccccee
Confidence 777763221 234556777778888899999998753
No 25
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.48 E-value=1.6e-06 Score=84.34 Aligned_cols=184 Identities=20% Similarity=0.180 Sum_probs=100.9
Q ss_pred ecCCCcccCCCcccccCceeEEEEeeeeecC-C-CCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCce
Q 014150 131 IWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-P-STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFT 208 (430)
Q Consensus 131 ~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~ 208 (430)
++....-+.|..+....++..|+|++|.+.. | +-|.++..|--|+|++++.. .+.--+.....|++|.|++.+-..
T Consensus 110 LShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe--~LPPQ~RRL~~LqtL~Ls~NPL~h 187 (1255)
T KOG0444|consen 110 LSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE--MLPPQIRRLSMLQTLKLSNNPLNH 187 (1255)
T ss_pred cchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh--hcCHHHHHHhhhhhhhcCCChhhH
Confidence 3333344566655555666667777666554 2 22445566666666666542 122223334456666666543211
Q ss_pred EEEEeCC---CcceEEEecccc-----ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeee
Q 014150 209 HLNIDAP---NLQFFDIGGVFD-----DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSY 280 (430)
Q Consensus 209 ~l~i~~p---~L~~L~l~~~~~-----~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 280 (430)
----..| +|..|.+++... ..++.++.+|..++++.. +-+.+.+.+-.+++|+.|.|+++
T Consensus 188 fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N------------~Lp~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 188 FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN------------NLPIVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc------------CCCcchHHHhhhhhhheeccCcC
Confidence 0000112 333344444221 123456677777777543 23444566778899999999988
Q ss_pred eeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150 281 FLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 339 (430)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 339 (430)
.+..+..+.. ...+|+.|+++.. .+..++.-+-..|+|++|.+..+.-
T Consensus 256 ~iteL~~~~~------~W~~lEtLNlSrN-----QLt~LP~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 256 KITELNMTEG------EWENLETLNLSRN-----QLTVLPDAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred ceeeeeccHH------HHhhhhhhccccc-----hhccchHHHhhhHHHHHHHhccCcc
Confidence 7765443322 3457888888543 2335666777788888887766543
No 26
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.35 E-value=8.7e-05 Score=51.00 Aligned_cols=57 Identities=35% Similarity=0.441 Sum_probs=38.4
Q ss_pred CceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150 147 QNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 204 (430)
Q Consensus 147 ~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c 204 (430)
++|++|++++|.+.. +..|.++++|++|+++++.+..- -...+.++|+|+.|.++++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence 467778888776654 34567788888888887776422 1234667788888877765
No 27
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.34 E-value=9.7e-05 Score=75.96 Aligned_cols=155 Identities=17% Similarity=0.231 Sum_probs=90.6
Q ss_pred CCcceEEEecccc------ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcc
Q 014150 215 PNLQFFDIGGVFD------DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIG 288 (430)
Q Consensus 215 p~L~~L~l~~~~~------~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 288 (430)
.+|++|++.|... ...-.-+|+|+.|.+++... ..+.+..+..++|||..|++++..+..+ .
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~----------~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~- 189 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF----------DNDDFSQLCASFPNLRSLDISGTNISNL-S- 189 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee----------cchhHHHHhhccCccceeecCCCCccCc-H-
Confidence 4677777776211 11112478888888875443 2344677888899999999987766543 1
Q ss_pred cCCCCCCccccccceeEE-EEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceecccccccccCceEEEE
Q 014150 289 NVPSRLPRPCVDLNYLSI-RINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKI 367 (430)
Q Consensus 289 ~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i 367 (430)
++. .+.||+.|.+ +..+....+ +.. |-++.+|+.|+|+.............| .+|. ..|.++++
T Consensus 190 ----GIS-~LknLq~L~mrnLe~e~~~~---l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qY-----lec~-~~LpeLrf 254 (699)
T KOG3665|consen 190 ----GIS-RLKNLQVLSMRNLEFESYQD---LID-LFNLKKLRVLDISRDKNNDDTKIIEQY-----LECG-MVLPELRF 254 (699)
T ss_pred ----HHh-ccccHHHHhccCCCCCchhh---HHH-HhcccCCCeeeccccccccchHHHHHH-----HHhc-ccCccccE
Confidence 122 3556666666 444444333 332 334788888888886643111111111 2332 12445555
Q ss_pred EeeecCccHHHHHHHHHccCCCcceEEEe
Q 014150 368 VGISGIRSELEFIKFVLSNSPVLETMTIK 396 (430)
Q Consensus 368 ~~~~~~~~e~~~~~~il~~~~~L~~l~i~ 396 (430)
.+..|..-..+++..+++.=|+|+.+..-
T Consensus 255 LDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 255 LDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred EecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 55667776777888888877878777743
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.29 E-value=0.00041 Score=71.94 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=31.6
Q ss_pred cCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150 138 KVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 204 (430)
Q Consensus 138 ~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c 204 (430)
.+|..+. ++|+.|.+.+|.+..-+. ..++|++|+|.++.++. +.. ..++|++|.+.++
T Consensus 215 sLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~L~Ls~N 272 (788)
T PRK15387 215 TLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LPV---LPPGLLELSIFSN 272 (788)
T ss_pred cCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCc--ccC---cccccceeeccCC
Confidence 4565443 367777777766654221 24677777777765542 111 1345666666554
No 29
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.26 E-value=0.0001 Score=75.76 Aligned_cols=158 Identities=23% Similarity=0.245 Sum_probs=95.2
Q ss_pred CceeEEEEeeeeecC---CCCC-CCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeCCCcceEEE
Q 014150 147 QNLIHLELFNCLLKP---PSTF-KGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDI 222 (430)
Q Consensus 147 ~~L~~L~L~~~~~~~---~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l 222 (430)
.+|++|+++|...-. +... .-||+|++|.+++..+..+++..+..++|+|..|+|+++. +..+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl------------ 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL------------ 188 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc------------
Confidence 689999998863322 1111 2589999999999998767688889999999999998763 2221
Q ss_pred eccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhh--cccCCCCCCccccc
Q 014150 223 GGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLA--IGNVPSRLPRPCVD 300 (430)
Q Consensus 223 ~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~ 300 (430)
.| +..+++|+.|.+...... +...+.. +-++.+|+.|+++........ .... ......+|+
T Consensus 189 ~G------IS~LknLq~L~mrnLe~e---------~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qY-lec~~~Lpe 251 (699)
T KOG3665|consen 189 SG------ISRLKNLQVLSMRNLEFE---------SYQDLID-LFNLKKLRVLDISRDKNNDDTKIIEQY-LECGMVLPE 251 (699)
T ss_pred HH------HhccccHHHHhccCCCCC---------chhhHHH-HhcccCCCeeeccccccccchHHHHHH-HHhcccCcc
Confidence 00 223444555544322211 2233333 345788888888754321100 0000 012224679
Q ss_pred cceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeec
Q 014150 301 LNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLAR 337 (430)
Q Consensus 301 L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 337 (430)
|+.|+.+....+. ..+..+++.-|+|+...+-.+
T Consensus 252 LrfLDcSgTdi~~---~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 252 LRFLDCSGTDINE---EILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred ccEEecCCcchhH---HHHHHHHHhCccHhhhhhhhh
Confidence 9999997543332 257788898999998776654
No 30
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.23 E-value=5.1e-05 Score=75.79 Aligned_cols=144 Identities=19% Similarity=0.196 Sum_probs=85.7
Q ss_pred CCCCcceEEeeeEE-echhhHHHHhhcCccccceEeecc-CCceEEEEeCCCcceEEEeccccceeeccCCCceEEEEEE
Q 014150 167 GFRNLKSLDLQHIT-LSQDVFENLISSSPTLERLTLMNF-DGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGL 244 (430)
Q Consensus 167 ~~~~L~~L~L~~~~-~~~~~l~~l~s~cp~Le~L~l~~c-~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~ 244 (430)
.+|+|+.|.+..+. +.+..+..+...|+.|++|.+..| ..... .+.........+++|+.+++..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------------~~~~~~~~~~~~~~L~~l~l~~ 252 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITL-------------SPLLLLLLLSICRKLKSLDLSG 252 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCccccccc-------------chhHhhhhhhhcCCcCccchhh
Confidence 47888888888775 566567777788888888888774 11110 0000111223456777777766
Q ss_pred EeeccccccCCCCCcchHHHHhccCCCccEEEEeeeee-ehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHH
Q 014150 245 YVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFL-KYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLL 323 (430)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll 323 (430)
+... .+..+..+...+++|++|.+..+.. .. .....+...+++|++|++..+....+ .++..+.
T Consensus 253 ~~~i---------sd~~l~~l~~~c~~L~~L~l~~c~~lt~----~gl~~i~~~~~~L~~L~l~~c~~~~d--~~l~~~~ 317 (482)
T KOG1947|consen 253 CGLV---------TDIGLSALASRCPNLETLSLSNCSNLTD----EGLVSIAERCPSLRELDLSGCHGLTD--SGLEALL 317 (482)
T ss_pred hhcc---------CchhHHHHHhhCCCcceEccCCCCccch----hHHHHHHHhcCcccEEeeecCccchH--HHHHHHH
Confidence 5532 3344455555688888888665442 11 11112233567888888876644322 2466678
Q ss_pred hcCCCccEEEEeecC
Q 014150 324 RSSPNLQELEMLARP 338 (430)
Q Consensus 324 ~~~p~L~~L~l~~~~ 338 (430)
.+||+|+.|.+....
T Consensus 318 ~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 318 KNCPNLRELKLLSLN 332 (482)
T ss_pred HhCcchhhhhhhhcC
Confidence 889988887765544
No 31
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.18 E-value=3.8e-06 Score=81.82 Aligned_cols=76 Identities=25% Similarity=0.381 Sum_probs=42.7
Q ss_pred EEEEecCCCcccCCCccc-ccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeec
Q 014150 127 FILEIWKGQRYKVPSSLF-LCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMN 203 (430)
Q Consensus 127 l~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~ 203 (430)
+.++++...-..+|..++ +...|-.|+|++|++.. |+....+.+|++|.|+++....-.+.. +.+..+|+.|.+++
T Consensus 129 iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~ 206 (1255)
T KOG0444|consen 129 IVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSN 206 (1255)
T ss_pred EEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhhhccc
Confidence 344444444345666554 45677777777777654 444556777777777777654332222 23344455555543
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.14 E-value=0.00024 Score=59.98 Aligned_cols=66 Identities=20% Similarity=0.209 Sum_probs=26.0
Q ss_pred ccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEe-eCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150 267 VHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRIN-FNDLEENLAALCLLRSSPNLQELEMLARP 338 (430)
Q Consensus 267 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 338 (430)
..+|+|++|.++++.+..+..- ..+. .+++|+.|++... ...... --..++..+|+|+.|+-....
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l---~~L~-~l~~L~~L~L~~NPv~~~~~--YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNEL---EPLS-SLPKLRVLSLEGNPVCEKKN--YRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCC---GGGG-G-TT--EEE-TT-GGGGSTT--HHHHHHHH-TT-SEETTEETT
T ss_pred HhCCcCCEEECcCCcCCChHHh---HHHH-cCCCcceeeccCCcccchhh--HHHHHHHHcChhheeCCEEcc
Confidence 3466677777766655432211 1111 4566776666322 111111 233467889999988765543
No 33
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.14 E-value=6.6e-05 Score=74.98 Aligned_cols=129 Identities=22% Similarity=0.282 Sum_probs=82.2
Q ss_pred CceeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEec-C---CCcccCCCcccccCceeEEEEeeeeecCCCCC----
Q 014150 94 GPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIW-K---GQRYKVPSSLFLCQNLIHLELFNCLLKPPSTF---- 165 (430)
Q Consensus 94 ~~l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~-~---~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~---- 165 (430)
..++++.+..........+..+.. ..+.++++++..+ . ............|.+|+.|+++++....+.++
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALAL--KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHh--hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 345556665543323222333332 3468889888642 1 11111222344679999999999873322222
Q ss_pred CCCCCcceEEeeeEE-echhhHHHHhhcCccccceEeeccCCceE-----EEEeCCCcceEEEec
Q 014150 166 KGFRNLKSLDLQHIT-LSQDVFENLISSSPTLERLTLMNFDGFTH-----LNIDAPNLQFFDIGG 224 (430)
Q Consensus 166 ~~~~~L~~L~L~~~~-~~~~~l~~l~s~cp~Le~L~l~~c~~~~~-----l~i~~p~L~~L~l~~ 224 (430)
..||+|++|.+..+. ++++++..+...||.|++|.+.+|..+.. +...+|+|+.|.+.+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 249999999988888 89999999999999999999999976532 223366666665443
No 34
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.11 E-value=2.3e-05 Score=64.26 Aligned_cols=125 Identities=23% Similarity=0.185 Sum_probs=78.5
Q ss_pred EecCCCcccCCCcccccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCce
Q 014150 130 EIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFT 208 (430)
Q Consensus 130 ~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~ 208 (430)
+++..+-.++|..+.+.++|+.|+++-+++.. |.+|+.||.|+.|+|.++..+...+..-+-....|+-|.+.+.+.
T Consensus 62 n~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-- 139 (264)
T KOG0617|consen 62 NLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-- 139 (264)
T ss_pred hcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc--
Confidence 33444446789988999999999999887654 778999999999999998877665544333445566666665321
Q ss_pred EEEEeCCCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeeh
Q 014150 209 HLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKY 284 (430)
Q Consensus 209 ~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 284 (430)
++-. -.++.+.+|+.|.+...... .+.+-++.+..|+.|.+.++.+..
T Consensus 140 --e~lp--------------~dvg~lt~lqil~lrdndll------------~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 140 --EILP--------------PDVGKLTNLQILSLRDNDLL------------SLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred --ccCC--------------hhhhhhcceeEEeeccCchh------------hCcHHHHHHHHHHHHhcccceeee
Confidence 1111 12334445555544332221 112335666778888888777653
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.08 E-value=0.00036 Score=62.45 Aligned_cols=65 Identities=23% Similarity=0.394 Sum_probs=39.7
Q ss_pred ccCCCcccccCceeEEEEeeeeec--------C--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeec
Q 014150 137 YKVPSSLFLCQNLIHLELFNCLLK--------P--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMN 203 (430)
Q Consensus 137 ~~lp~~~~~~~~L~~L~L~~~~~~--------~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~ 203 (430)
+++...+--|..|+.|..++..-+ . +.++..|.+|+++.++.|. .+.+..+...=|.|..+++.+
T Consensus 172 ~d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~--~~~i~~~~~~kptl~t~~v~~ 246 (490)
T KOG1259|consen 172 YDFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS--TENIVDIELLKPTLQTICVHN 246 (490)
T ss_pred cchHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc--hhheeceeecCchhheeeeec
Confidence 344443334678888888764211 0 1223357888888887773 344555566678888888775
No 36
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.89 E-value=0.001 Score=69.03 Aligned_cols=57 Identities=18% Similarity=0.071 Sum_probs=31.7
Q ss_pred CCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCC
Q 014150 270 PHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEE 340 (430)
Q Consensus 270 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~ 340 (430)
++|+.|+++++.+.. +|..+.+|+.|+++.+. +..++.-+..+++|+.|++++++-.
T Consensus 402 s~L~~LdLS~N~Lss---------IP~l~~~L~~L~Ls~Nq-----Lt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 402 SELKELMVSGNRLTS---------LPMLPSGLLSLSVYRNQ-----LTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred cCCCEEEccCCcCCC---------CCcchhhhhhhhhccCc-----ccccChHHhhccCCCeEECCCCCCC
Confidence 456666666655431 22223356666663321 1234555667888888888877543
No 37
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.78 E-value=0.00014 Score=74.31 Aligned_cols=69 Identities=22% Similarity=0.329 Sum_probs=35.8
Q ss_pred chHHHHHHHHHhCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEec
Q 014150 110 SDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLS 182 (430)
Q Consensus 110 ~~v~~wl~~~~~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~ 182 (430)
..+..|+. ...+++-+..... ....+|..++...+|+.|+...|.+.- |....++.+|++|+|..+.+.
T Consensus 254 ~~lp~wi~--~~~nle~l~~n~N--~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~ 323 (1081)
T KOG0618|consen 254 SNLPEWIG--ACANLEALNANHN--RLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP 323 (1081)
T ss_pred hcchHHHH--hcccceEecccch--hHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc
Confidence 33445553 2344444443321 123455555555566666666555443 222335778888888887653
No 38
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.69 E-value=0.0022 Score=66.79 Aligned_cols=52 Identities=23% Similarity=0.227 Sum_probs=27.5
Q ss_pred CceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150 147 QNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 204 (430)
Q Consensus 147 ~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c 204 (430)
++|+.|+|++|.+.. |.. .+++|++|+|.++.+.. +...+ .+.|+.|.+.+|
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~--l~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~Ls~N 251 (754)
T PRK15370 199 EQITTLILDNNELKSLPEN--LQGNIKTLYANSNQLTS--IPATL--PDTIQEMELSIN 251 (754)
T ss_pred cCCcEEEecCCCCCcCChh--hccCCCEEECCCCcccc--CChhh--hccccEEECcCC
Confidence 456777777766554 222 23567777776665541 11111 235666666655
No 39
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=96.57 E-value=0.003 Score=34.76 Aligned_cols=25 Identities=36% Similarity=0.688 Sum_probs=22.1
Q ss_pred CcceEEeeeEEechh-hHHHHhhcCc
Q 014150 170 NLKSLDLQHITLSQD-VFENLISSSP 194 (430)
Q Consensus 170 ~L~~L~L~~~~~~~~-~l~~l~s~cp 194 (430)
+||+|+|.++.+.++ .++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999998655 7999999998
No 40
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.56 E-value=0.0015 Score=67.96 Aligned_cols=60 Identities=17% Similarity=0.122 Sum_probs=32.0
Q ss_pred CCccEEEEeeeeeehhhcccCCCCCCccc-cccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150 270 PHIRRLEIQSYFLKYLAIGNVPSRLPRPC-VDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 339 (430)
Q Consensus 270 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 339 (430)
++|+.|+|+++.+.. +|..+ .+|+.|+++.+....- -..++.++..+|++..|.+.+++.
T Consensus 367 ~~L~~LdLs~N~Lt~---------LP~~l~~sL~~LdLs~N~L~~L-P~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 367 PTITTLDVSRNALTN---------LPENLPAALQIMQASRNNLVRL-PESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CCcCEEECCCCcCCC---------CCHhHHHHHHHHhhccCCcccC-chhHHHHhhcCCCccEEEeeCCCc
Confidence 456666666554431 12111 2466666643321110 013566677778888888887764
No 41
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.38 E-value=0.00088 Score=62.44 Aligned_cols=65 Identities=22% Similarity=0.324 Sum_probs=41.2
Q ss_pred HHHHHhCCceEE-EEEecCCCcccCCCcccccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEe
Q 014150 116 ILYMSRSCVKEF-ILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITL 181 (430)
Q Consensus 116 l~~~~~~~l~~l-~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~ 181 (430)
+.+...+.+.++ .+++.....-++|..+.-..+|.+|+++++.+.. |..++++ .|+.|.+.++.+
T Consensus 243 lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 243 LPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred hHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 344444444332 2344444445677776667788888888887766 6677777 888888887764
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.26 E-value=0.0036 Score=42.83 Aligned_cols=56 Identities=27% Similarity=0.310 Sum_probs=42.2
Q ss_pred CceEEEEEecCCCcccCCCcc-cccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEE
Q 014150 123 CVKEFILEIWKGQRYKVPSSL-FLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT 180 (430)
Q Consensus 123 ~l~~l~l~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~ 180 (430)
+++.+++..+ .-..+|... ..+++|++|++++|.+.. +..|.++++|+.|+++++.
T Consensus 2 ~L~~L~l~~n--~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNN--KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSS--TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCC--CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4566666543 234567644 468999999999998764 5678899999999998875
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.19 E-value=0.0018 Score=40.96 Aligned_cols=36 Identities=28% Similarity=0.406 Sum_probs=21.8
Q ss_pred CceeEEEEeeeeecCCCC-CCCCCCcceEEeeeEEec
Q 014150 147 QNLIHLELFNCLLKPPST-FKGFRNLKSLDLQHITLS 182 (430)
Q Consensus 147 ~~L~~L~L~~~~~~~~~~-~~~~~~L~~L~L~~~~~~ 182 (430)
++|++|+++++.+..-+. +.+|++|+.|+++++.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 356777777776665223 667777777777776654
No 44
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.78 E-value=4.8e-05 Score=70.56 Aligned_cols=177 Identities=19% Similarity=0.132 Sum_probs=82.5
Q ss_pred cccCCCcccccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEe-
Q 014150 136 RYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNID- 213 (430)
Q Consensus 136 ~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~- 213 (430)
..++|..++.|..|..|+.+++.+.. |.+++++..|..|.+.++.+..-. +..+. ..+|++|+.... .++.+.-.
T Consensus 126 ~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~-~~~i~-m~~L~~ld~~~N-~L~tlP~~l 202 (565)
T KOG0472|consen 126 LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALP-ENHIA-MKRLKHLDCNSN-LLETLPPEL 202 (565)
T ss_pred eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCC-HHHHH-HHHHHhcccchh-hhhcCChhh
Confidence 34566666666666666666665544 455556666666666666543221 11122 444555543321 11111000
Q ss_pred --CCCcceEEEeccccc--eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhccc
Q 014150 214 --APNLQFFDIGGVFDD--VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGN 289 (430)
Q Consensus 214 --~p~L~~L~l~~~~~~--~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 289 (430)
-.+|..|++....-. -.|.+|..|.++.++....... -.+.+..++++..|++..+.++.+..+.
T Consensus 203 g~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~l-----------pae~~~~L~~l~vLDLRdNklke~Pde~ 271 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEML-----------PAEHLKHLNSLLVLDLRDNKLKEVPDEI 271 (565)
T ss_pred cchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhh-----------HHHHhcccccceeeeccccccccCchHH
Confidence 123333333321110 1355666666665543321100 0233456677777777766665433322
Q ss_pred CCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150 290 VPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 338 (430)
Q Consensus 290 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 338 (430)
. .+.+|..|+++.. ++.+++.-|.+. .|+.|.++|++
T Consensus 272 c------lLrsL~rLDlSNN-----~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 272 C------LLRSLERLDLSNN-----DISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred H------HhhhhhhhcccCC-----ccccCCcccccc-eeeehhhcCCc
Confidence 2 2345566665322 222344445555 55555555554
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.59 E-value=0.0075 Score=54.24 Aligned_cols=90 Identities=16% Similarity=0.139 Sum_probs=67.2
Q ss_pred cCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCC
Q 014150 233 NTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFND 312 (430)
Q Consensus 233 ~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 312 (430)
.+..+.++++.+.... ++..+..++.++|+|+.|.|+.+.+.. ....+|....||+.|.++..+..
T Consensus 69 ~~~~v~elDL~~N~iS---------dWseI~~ile~lP~l~~LNls~N~L~s-----~I~~lp~p~~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLIS---------DWSEIGAILEQLPALTTLNLSCNSLSS-----DIKSLPLPLKNLRVLVLNGTGLS 134 (418)
T ss_pred Hhhhhhhhhcccchhc---------cHHHHHHHHhcCccceEeeccCCcCCC-----ccccCcccccceEEEEEcCCCCC
Confidence 4677888888765432 567778899999999999999887642 22234435679999999766544
Q ss_pred hhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150 313 LEENLAALCLLRSSPNLQELEMLARPE 339 (430)
Q Consensus 313 ~~~~~~l~~ll~~~p~L~~L~l~~~~~ 339 (430)
+ ..+..++...|.++.|+++.+..
T Consensus 135 w---~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 135 W---TQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred h---hhhhhhhhcchhhhhhhhccchh
Confidence 3 35778899999999999988754
No 46
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=95.59 E-value=0.0043 Score=63.88 Aligned_cols=46 Identities=35% Similarity=0.412 Sum_probs=37.5
Q ss_pred ccCCCcccccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEec
Q 014150 137 YKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLS 182 (430)
Q Consensus 137 ~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~ 182 (430)
...|....+..+|+.|.|.++.+.. |.++..+.+|..|+++.+.+.
T Consensus 81 ~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~ 127 (1081)
T KOG0618|consen 81 RSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG 127 (1081)
T ss_pred hhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccC
Confidence 4567777777899999999987765 667778999999999998865
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.54 E-value=0.028 Score=59.82 Aligned_cols=122 Identities=16% Similarity=0.223 Sum_probs=60.0
Q ss_pred CceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEe-chhhHHHHhhcCccccceEeeccCCceEEE--E-eCCCcceEEE
Q 014150 147 QNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITL-SQDVFENLISSSPTLERLTLMNFDGFTHLN--I-DAPNLQFFDI 222 (430)
Q Consensus 147 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~--i-~~p~L~~L~l 222 (430)
...+...+-++.+.....-..+|.|++|-+..+.. -...-..++...|.|+.|++++|..+..+. | .--+|++|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 45566666655544323333566777777766542 111112335556777777777665544331 1 1235555555
Q ss_pred ecccc---ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEee
Q 014150 223 GGVFD---DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQS 279 (430)
Q Consensus 223 ~~~~~---~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 279 (430)
++... +..+.++.+|.+|++........ +......+++|++|.+-.
T Consensus 603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~-----------~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLES-----------IPGILLELQSLRVLRLPR 651 (889)
T ss_pred cCCCccccchHHHHHHhhheecccccccccc-----------ccchhhhcccccEEEeec
Confidence 54321 12344555666666654432211 122234466666666643
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.16 E-value=0.01 Score=53.95 Aligned_cols=37 Identities=27% Similarity=0.509 Sum_probs=34.8
Q ss_pred CcccCCCc----HHHHHHHHcCCCchhhhhhhhhhhhhHhh
Q 014150 17 LDRLSSLP----AHVIDQILSQLPIRDAVRTSVLSKKWRYK 53 (430)
Q Consensus 17 ~d~is~LP----delL~~Ils~L~~~d~~r~s~vskrWr~l 53 (430)
.|-++.|| |++-..||++|+..+++.+-.|||+|+++
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 58899999 99999999999999999999999999974
No 49
>PLN03150 hypothetical protein; Provisional
Probab=94.97 E-value=0.017 Score=59.55 Aligned_cols=77 Identities=21% Similarity=0.224 Sum_probs=53.2
Q ss_pred ceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE---EeCCCcceEEE
Q 014150 148 NLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN---IDAPNLQFFDI 222 (430)
Q Consensus 148 ~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~---i~~p~L~~L~l 222 (430)
.++.|+|+++.+.. |..+..+++|+.|+|.++.+.+. +...+..++.|+.|+|+++.-...+. -..++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 37788888887653 45567888999999988877644 45556788889999988764322111 13467888887
Q ss_pred ecc
Q 014150 223 GGV 225 (430)
Q Consensus 223 ~~~ 225 (430)
.++
T Consensus 498 s~N 500 (623)
T PLN03150 498 NGN 500 (623)
T ss_pred cCC
Confidence 764
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.80 E-value=0.0054 Score=61.61 Aligned_cols=101 Identities=18% Similarity=0.140 Sum_probs=55.7
Q ss_pred CCCcceEEeeeEEechhhHHHHhhcCccccceEeeccC--CceEEEEeCCCcceEEEeccccc--eeeccCCCceEEEEE
Q 014150 168 FRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD--GFTHLNIDAPNLQFFDIGGVFDD--VTFENTFHLALVSIG 243 (430)
Q Consensus 168 ~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~--~~~~l~i~~p~L~~L~l~~~~~~--~~~~~~p~L~~l~i~ 243 (430)
+|.|+.|+|+++.+..-+ .+..||.|++|+|++.. .+..+...+-.|..|.+.++.-. .-+.++.+|..|+++
T Consensus 186 l~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDls 262 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLS 262 (1096)
T ss_pred HHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchh
Confidence 467777888777765432 35568888888887532 22223333334666666664321 123467777777776
Q ss_pred EEeeccccccCCCCCcchHHHHhccCCCccEEEEeeee
Q 014150 244 LYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYF 281 (430)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 281 (430)
++...+-. =...+..+..|+.|+|.+|.
T Consensus 263 yNll~~hs----------eL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 263 YNLLSEHS----------ELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred Hhhhhcch----------hhhHHHHHHHHHHHhhcCCc
Confidence 54322110 01234555566666666554
No 51
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=94.71 E-value=0.025 Score=52.93 Aligned_cols=59 Identities=25% Similarity=0.313 Sum_probs=43.2
Q ss_pred CCceEEEEEecCCCcccCCCccc-ccCceeEEEEeeeeec--CCCCCCCCCCcceEEeee-EEec
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLF-LCQNLIHLELFNCLLK--PPSTFKGFRNLKSLDLQH-ITLS 182 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~--~~~~~~~~~~L~~L~L~~-~~~~ 182 (430)
.+..+++++-... -.+|...+ ..++|+.|+|+.|.+. .|.+|.++++|.+|.+.+ +.|.
T Consensus 67 ~~tveirLdqN~I--~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 67 PETVEIRLDQNQI--SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred CcceEEEeccCCc--ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 4555666654322 35777655 5699999999999765 477899999999999988 5565
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.53 E-value=0.062 Score=45.81 Aligned_cols=58 Identities=28% Similarity=0.316 Sum_probs=36.9
Q ss_pred cCceeEEEEeeeeecC-CCCCC-CCCCcceEEeeeEEech-hhHHHHhhcCccccceEeecc
Q 014150 146 CQNLIHLELFNCLLKP-PSTFK-GFRNLKSLDLQHITLSQ-DVFENLISSSPTLERLTLMNF 204 (430)
Q Consensus 146 ~~~L~~L~L~~~~~~~-~~~~~-~~~~L~~L~L~~~~~~~-~~l~~l~s~cp~Le~L~l~~c 204 (430)
.+.|.+|.|++|++.. .+.+. .+|+|.+|.|.++.+.. .++.. +.+||+|+.|++-+-
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGN 123 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCC
Confidence 4677888888777654 22222 46778888888777532 22333 456788888877654
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.50 E-value=0.026 Score=35.63 Aligned_cols=35 Identities=34% Similarity=0.502 Sum_probs=27.9
Q ss_pred CCcceEEeeeEEechhhHHHHhhcCccccceEeeccC
Q 014150 169 RNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD 205 (430)
Q Consensus 169 ~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~ 205 (430)
++|++|+|.++.+++ +...++.|++|+.|.++++.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 589999999999873 55557899999999999874
No 54
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=94.31 E-value=0.03 Score=52.92 Aligned_cols=38 Identities=21% Similarity=0.353 Sum_probs=33.6
Q ss_pred ccCCCcHHHHHHHHcCCC-chhhhhhhhhhhhhHhhcCc
Q 014150 19 RLSSLPAHVIDQILSQLP-IRDAVRTSVLSKKWRYKWAT 56 (430)
Q Consensus 19 ~is~LPdelL~~Ils~L~-~~d~~r~s~vskrWr~lw~~ 56 (430)
..++||+|+|..|..+|+ .-|++|.+.||+.||.....
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 367899999999999997 57999999999999986543
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.98 E-value=0.084 Score=45.02 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=52.8
Q ss_pred CceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccC--CceEE--EEeCCCcceEEE
Q 014150 147 QNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD--GFTHL--NIDAPNLQFFDI 222 (430)
Q Consensus 147 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~--~~~~l--~i~~p~L~~L~l 222 (430)
.....++|+.|.+.....|..+++|.+|.|..+.|+.-+ ..+....|+|..|.+.+.. .+..+ -..+|.|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 466788999988877677889999999999999876321 2233346888888888632 11111 135677777777
Q ss_pred ecc
Q 014150 223 GGV 225 (430)
Q Consensus 223 ~~~ 225 (430)
.|.
T Consensus 121 l~N 123 (233)
T KOG1644|consen 121 LGN 123 (233)
T ss_pred cCC
Confidence 663
No 56
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=92.89 E-value=0.066 Score=48.52 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=31.6
Q ss_pred CCcccCCCcHHHHHHHHc-----CCCchhhhhhhhhhhhhHh
Q 014150 16 ELDRLSSLPAHVIDQILS-----QLPIRDAVRTSVLSKKWRY 52 (430)
Q Consensus 16 ~~d~is~LPdelL~~Ils-----~L~~~d~~r~s~vskrWr~ 52 (430)
..+.|+.||||||..||. -++.++..++|.|||.|..
T Consensus 103 ~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~ 144 (366)
T KOG2997|consen 103 ELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK 144 (366)
T ss_pred hhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence 345678999999999987 4567999999999999975
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.13 E-value=0.14 Score=45.69 Aligned_cols=74 Identities=15% Similarity=0.027 Sum_probs=42.6
Q ss_pred hccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHH--hcCCCccEEEEeecCCC
Q 014150 266 FVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLL--RSSPNLQELEMLARPEE 340 (430)
Q Consensus 266 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll--~~~p~L~~L~l~~~~~~ 340 (430)
+..+.+|+.|+|..+++.-.........++ ..++|+.|.++-|..+.....++...+ ...|+|+.|....+...
T Consensus 210 l~y~~~LevLDlqDNtft~~gS~~La~al~-~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 210 LFYSHSLEVLDLQDNTFTLEGSRYLADALC-EWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred HHHhCcceeeeccccchhhhhHHHHHHHhc-ccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 456789999999988754221111111122 455789999987765543322222222 23588888877766543
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=91.91 E-value=0.32 Score=46.83 Aligned_cols=10 Identities=30% Similarity=0.720 Sum_probs=5.2
Q ss_pred ceeEEEEeee
Q 014150 148 NLIHLELFNC 157 (430)
Q Consensus 148 ~L~~L~L~~~ 157 (430)
+|++|.+++|
T Consensus 73 sLtsL~Lsnc 82 (426)
T PRK15386 73 ELTEITIENC 82 (426)
T ss_pred CCcEEEccCC
Confidence 3555555543
No 59
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.74 E-value=0.024 Score=48.21 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=49.8
Q ss_pred cCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEE-echhhHHHHhhcCccccceEeeccCCceE
Q 014150 138 KVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTLERLTLMNFDGFTH 209 (430)
Q Consensus 138 ~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~s~cp~Le~L~l~~c~~~~~ 209 (430)
.+|..-..--.++.++-+++.+.. -..+.+++.++.|.+..|. +++..++.+-.-.|+|+.|.|+.|+.++.
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 455433333456667666655433 1234578888889998887 67778888777889999999999886653
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.74 E-value=0.012 Score=52.47 Aligned_cols=12 Identities=50% Similarity=0.894 Sum_probs=6.9
Q ss_pred HHhcCCCccEEE
Q 014150 322 LLRSSPNLQELE 333 (430)
Q Consensus 322 ll~~~p~L~~L~ 333 (430)
.|+.+|+|++|+
T Consensus 112 VLR~LPnLkKLD 123 (388)
T KOG2123|consen 112 VLRVLPNLKKLD 123 (388)
T ss_pred HHHHcccchhcc
Confidence 455566666654
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.72 E-value=0.05 Score=48.17 Aligned_cols=59 Identities=27% Similarity=0.276 Sum_probs=42.4
Q ss_pred cccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEE--echhhHHHHhhcCccccceEeec
Q 014150 144 FLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHIT--LSQDVFENLISSSPTLERLTLMN 203 (430)
Q Consensus 144 ~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~l~~l~s~cp~Le~L~l~~ 203 (430)
-....|+.|++.++.+.....|-.+|+|++|.++.+. +.. .+.-++..||+|++|.++.
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~-~l~vl~e~~P~l~~l~ls~ 100 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSG-GLEVLAEKAPNLKVLNLSG 100 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccc-cceehhhhCCceeEEeecC
Confidence 3456677777777777776667778888999988884 333 3555566778888888875
No 62
>PLN03150 hypothetical protein; Provisional
Probab=91.11 E-value=0.19 Score=51.99 Aligned_cols=68 Identities=16% Similarity=0.236 Sum_probs=57.0
Q ss_pred ccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccC
Q 014150 137 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD 205 (430)
Q Consensus 137 ~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~ 205 (430)
..+|..+..+++|+.|+|++|.+.. |..+..+++|+.|+|+++.+.+. +...+..+++|+.|.|.++.
T Consensus 432 g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECcCCc
Confidence 3578788889999999999998864 45678999999999999998755 45567889999999999864
No 63
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=89.61 E-value=0.17 Score=49.25 Aligned_cols=76 Identities=28% Similarity=0.284 Sum_probs=45.8
Q ss_pred CceeEEEEeeeeecCCCCCC-CC-CCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE---EeCCCcceEE
Q 014150 147 QNLIHLELFNCLLKPPSTFK-GF-RNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN---IDAPNLQFFD 221 (430)
Q Consensus 147 ~~L~~L~L~~~~~~~~~~~~-~~-~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~---i~~p~L~~L~ 221 (430)
+.+..|.+.++.+..-.... .+ ++|+.|++..+.+..- ..-+..+|.|+.|.+.+++-. .+. ...++|+.|.
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l--~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL--PSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhh--hhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 56777777777665532222 33 2788888877765432 123556788888888776422 221 1567777777
Q ss_pred Eecc
Q 014150 222 IGGV 225 (430)
Q Consensus 222 l~~~ 225 (430)
+.+.
T Consensus 193 ls~N 196 (394)
T COG4886 193 LSGN 196 (394)
T ss_pred ccCC
Confidence 7663
No 64
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=89.47 E-value=0.21 Score=27.32 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=14.5
Q ss_pred CCCcceEEeeeEE-echhhHHHH
Q 014150 168 FRNLKSLDLQHIT-LSQDVFENL 189 (430)
Q Consensus 168 ~~~L~~L~L~~~~-~~~~~l~~l 189 (430)
||+|+.|+|.+|. ++|.++..+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 4667777777775 666666554
No 65
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=89.18 E-value=0.22 Score=48.45 Aligned_cols=162 Identities=20% Similarity=0.246 Sum_probs=97.5
Q ss_pred CceEEEEEecCCCcccCCCcccccC-ceeEEEEeeeeecCC-CCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceE
Q 014150 123 CVKEFILEIWKGQRYKVPSSLFLCQ-NLIHLELFNCLLKPP-STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT 200 (430)
Q Consensus 123 ~l~~l~l~~~~~~~~~lp~~~~~~~-~L~~L~L~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~ 200 (430)
.+..+.+.. ....+++......+ +|+.|+++++.+..- .....+++|+.|++..+.+.+ +.......+.|+.|.
T Consensus 117 ~l~~L~l~~--n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ 192 (394)
T COG4886 117 NLTSLDLDN--NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLD 192 (394)
T ss_pred ceeEEecCC--cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhhee
Confidence 344444432 23345776666664 899999999988763 456789999999999998753 233333688899999
Q ss_pred eeccCCceEEEE--eCCC-cceEEEecc-ccc--eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccE
Q 014150 201 LMNFDGFTHLNI--DAPN-LQFFDIGGV-FDD--VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRR 274 (430)
Q Consensus 201 l~~c~~~~~l~i--~~p~-L~~L~l~~~-~~~--~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 274 (430)
+.+.. +..+.- ..++ |+.|.+.+. ... ..+..+.++..+.+...... .+...+..+++++.
T Consensus 193 ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~------------~~~~~~~~l~~l~~ 259 (394)
T COG4886 193 LSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE------------DLPESIGNLSNLET 259 (394)
T ss_pred ccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee------------eccchhccccccce
Confidence 99753 233332 2344 777777665 211 12334455555543222111 11234677788888
Q ss_pred EEEeeeeeehhhcccCCCCCCccccccceeEEEE
Q 014150 275 LEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRI 308 (430)
Q Consensus 275 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 308 (430)
|.++.+.+..++. +. ...+++.|+++.
T Consensus 260 L~~s~n~i~~i~~------~~-~~~~l~~L~~s~ 286 (394)
T COG4886 260 LDLSNNQISSISS------LG-SLTNLRELDLSG 286 (394)
T ss_pred ecccccccccccc------cc-ccCccCEEeccC
Confidence 8888776653322 11 355777777743
No 66
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.45 E-value=0.3 Score=26.00 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=14.7
Q ss_pred CCCcceEEeeeEEechhhHHHH
Q 014150 168 FRNLKSLDLQHITLSQDVFENL 189 (430)
Q Consensus 168 ~~~L~~L~L~~~~~~~~~l~~l 189 (430)
+++|++|+|.++.++++.+..+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 4788888998888887766554
No 67
>PF13013 F-box-like_2: F-box-like domain
Probab=86.93 E-value=0.89 Score=34.94 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=26.3
Q ss_pred ccCCCcHHHHHHHHcCCCchhhhhhhhhhh
Q 014150 19 RLSSLPAHVIDQILSQLPIRDAVRTSVLSK 48 (430)
Q Consensus 19 ~is~LPdelL~~Ils~L~~~d~~r~s~vsk 48 (430)
.+.+||+||+..|+.+-...+...+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 477899999999999999999888776665
No 68
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=86.58 E-value=0.16 Score=45.98 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=16.3
Q ss_pred cCceeEEEEeeeeecCCCCCC-CCCCcceEEeeeEE
Q 014150 146 CQNLIHLELFNCLLKPPSTFK-GFRNLKSLDLQHIT 180 (430)
Q Consensus 146 ~~~L~~L~L~~~~~~~~~~~~-~~~~L~~L~L~~~~ 180 (430)
.++|+.|+|++|.+..-.++. .+-|.++|.|..+.
T Consensus 328 L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred cccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence 455556666655443322221 34445555554443
No 69
>PRK15386 type III secretion protein GogB; Provisional
Probab=86.36 E-value=1 Score=43.43 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=31.5
Q ss_pred CCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE-EeCCCcceEEEecc
Q 014150 167 GFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN-IDAPNLQFFDIGGV 225 (430)
Q Consensus 167 ~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~-i~~p~L~~L~l~~~ 225 (430)
.|++++.|++++|.+.. +.. --++|++|.+.+|..+..+. .-.++|++|.+.++
T Consensus 50 ~~~~l~~L~Is~c~L~s--LP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIES--LPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCcc--cCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCc
Confidence 36778888887774321 121 11247888888776654332 12357777777654
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=86.28 E-value=0.26 Score=43.79 Aligned_cols=93 Identities=15% Similarity=0.018 Sum_probs=53.5
Q ss_pred eccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEee
Q 014150 231 FENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINF 310 (430)
Q Consensus 231 ~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 310 (430)
+..+|+|++|.++..... ....+..+...+|+|++|.++++.+..++.-. .++ .+.||+.|.+..+-
T Consensus 61 ~P~Lp~LkkL~lsdn~~~---------~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~---pl~-~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRR---------VSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR---PLK-ELENLKSLDLFNCS 127 (260)
T ss_pred CCCcchhhhhcccCCccc---------ccccceehhhhCCceeEEeecCCccccccccc---hhh-hhcchhhhhcccCC
Confidence 345667777777654221 11222233566799999999999887533221 122 56788888885442
Q ss_pred CChhhHHHHHHHHhcCCCccEEEEeec
Q 014150 311 NDLEENLAALCLLRSSPNLQELEMLAR 337 (430)
Q Consensus 311 ~~~~~~~~l~~ll~~~p~L~~L~l~~~ 337 (430)
... ...-=..+++-.|+|+.|+-...
T Consensus 128 ~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 128 VTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred ccc-cccHHHHHHHHhhhhcccccccc
Confidence 211 11123346677888888875443
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.18 E-value=0.11 Score=46.51 Aligned_cols=57 Identities=19% Similarity=0.111 Sum_probs=27.4
Q ss_pred CceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeec
Q 014150 147 QNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMN 203 (430)
Q Consensus 147 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~ 203 (430)
+.|+.|.|+-|.+..-..+..|.+|++|+|..+.|.+-+-..-+.+.|+|+.|+|..
T Consensus 41 p~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 41 PLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred ccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 445555555544444344445555555555555544322222344455555555553
No 72
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=85.87 E-value=0.33 Score=51.89 Aligned_cols=116 Identities=22% Similarity=0.220 Sum_probs=67.6
Q ss_pred HHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCc
Q 014150 263 LRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETG 342 (430)
Q Consensus 263 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~ 342 (430)
..++..+|.|+.|+|+.+.. ....|..+. .+-+|++|+++... +..++.-++++.+|.+|++........
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~----l~~LP~~I~-~Li~LryL~L~~t~-----I~~LP~~l~~Lk~L~~Lnl~~~~~l~~ 633 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSS----LSKLPSSIG-ELVHLRYLDLSDTG-----ISHLPSGLGNLKKLIYLNLEVTGRLES 633 (889)
T ss_pred HHHHhhCcceEEEECCCCCc----cCcCChHHh-hhhhhhcccccCCC-----ccccchHHHHHHhhheecccccccccc
Confidence 35678889999999986432 122222222 45678877775432 235777788888899998887654310
Q ss_pred ccccccceecccccccccCceEEEEEeeecCccHHHHHHHHHccCCCcceEEEeecC
Q 014150 343 IGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPAS 399 (430)
Q Consensus 343 ~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~~~~ 399 (430)
. ....+.+.+|+++.+..-.- ......+. -+.+...|+.++++...
T Consensus 634 ~---------~~i~~~L~~Lr~L~l~~s~~-~~~~~~l~-el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 634 I---------PGILLELQSLRVLRLPRSAL-SNDKLLLK-ELENLEHLENLSITISS 679 (889)
T ss_pred c---------cchhhhcccccEEEeecccc-ccchhhHH-hhhcccchhhheeecch
Confidence 0 11233577888888775431 11112222 22677777777775443
No 73
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=85.45 E-value=0.35 Score=48.70 Aligned_cols=39 Identities=31% Similarity=0.378 Sum_probs=36.4
Q ss_pred CCCcccCCCcHHHHHHHHcCCCchhhhhhhhhhhhhHhh
Q 014150 15 TELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYK 53 (430)
Q Consensus 15 ~~~d~is~LPdelL~~Ils~L~~~d~~r~s~vskrWr~l 53 (430)
...|.++.||-|+-..||++|+.++.+.+++||+.|+.+
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 457999999999999999999999999999999999874
No 74
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=84.75 E-value=0.066 Score=42.76 Aligned_cols=57 Identities=25% Similarity=0.317 Sum_probs=31.4
Q ss_pred CceeEEEEeeeeecC-CCCCC-CCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccC
Q 014150 147 QNLIHLELFNCLLKP-PSTFK-GFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD 205 (430)
Q Consensus 147 ~~L~~L~L~~~~~~~-~~~~~-~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~ 205 (430)
..|...+|++|.+.+ |..|. .||.+++|+|.++.+++-..+ ++..|.|+.|.++..+
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNP 111 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCc
Confidence 455556666665554 33333 455666666666665543222 5556666666666543
No 75
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=83.91 E-value=2.7 Score=37.88 Aligned_cols=186 Identities=14% Similarity=0.118 Sum_probs=90.8
Q ss_pred cCceeEEEEeeeeecCCC------CCCCCCCcceEEeeeEEec---hh------hHHHHhhcCccccceEeeccCC-ce-
Q 014150 146 CQNLIHLELFNCLLKPPS------TFKGFRNLKSLDLQHITLS---QD------VFENLISSSPTLERLTLMNFDG-FT- 208 (430)
Q Consensus 146 ~~~L~~L~L~~~~~~~~~------~~~~~~~L~~L~L~~~~~~---~~------~l~~l~s~cp~Le~L~l~~c~~-~~- 208 (430)
..+++.++|+||.+.... ...+-.+|+.-+++..... ++ .+...+..||+|+..++++.-- .+
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 578899999999775421 1224466666666654321 21 2344566899999999986421 11
Q ss_pred -----EEEEeCCCcceEEEecc-ccce----------------eeccCCCceEEEEEEEeeccccccCCCCCcchHHHHh
Q 014150 209 -----HLNIDAPNLQFFDIGGV-FDDV----------------TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFF 266 (430)
Q Consensus 209 -----~l~i~~p~L~~L~l~~~-~~~~----------------~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l 266 (430)
.+.-.+..|++|.+..+ .+++ -..+.|.|+.+.+...... .+...-+...+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-------ngs~~~~a~~l 181 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-------NGSKELSAALL 181 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-------cCcHHHHHHHH
Confidence 11224567777777632 1110 1135566666655432211 11122223344
Q ss_pred ccCCCccEEEEeeeeeehhhcccC-CCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150 267 VHLPHIRRLEIQSYFLKYLAIGNV-PSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 339 (430)
Q Consensus 267 ~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 339 (430)
..-.+|+.+.+..+.+..-..... ...+ .-+.+|+.|++.-.+.+...-..+...+..-|.|+.|.+..|-.
T Consensus 182 ~sh~~lk~vki~qNgIrpegv~~L~~~gl-~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 182 ESHENLKEVKIQQNGIRPEGVTMLAFLGL-FYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred HhhcCceeEEeeecCcCcchhHHHHHHHH-HHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 444567777666555432100000 0000 12456666666433222221122333444455666666666543
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.01 E-value=0.075 Score=45.29 Aligned_cols=66 Identities=20% Similarity=0.222 Sum_probs=47.4
Q ss_pred ccccCceeEEEEeeee-ecCC--CCC-CCCCCcceEEeeeEE-echhhHHHHhhcCccccceEeeccCCceE
Q 014150 143 LFLCQNLIHLELFNCL-LKPP--STF-KGFRNLKSLDLQHIT-LSQDVFENLISSSPTLERLTLMNFDGFTH 209 (430)
Q Consensus 143 ~~~~~~L~~L~L~~~~-~~~~--~~~-~~~~~L~~L~L~~~~-~~~~~l~~l~s~cp~Le~L~l~~c~~~~~ 209 (430)
+..+++++.|.+.+|. +.+. ..+ ...|+|+.|+|++|. |++..+.. +...++|+.|.|.+.+.+..
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC-LLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH-HHHhhhhHHHHhcCchhhhc
Confidence 4456888888888884 3331 111 257999999999887 88887765 44678999999988766543
No 77
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=82.15 E-value=2.6 Score=27.39 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=30.8
Q ss_pred cccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEe
Q 014150 299 VDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEML 335 (430)
Q Consensus 299 ~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~ 335 (430)
.+|+.+.+........++.-+..++++++.|+++.|.
T Consensus 14 s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 14 SHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred heeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 6899999965555566788889999999999999886
No 78
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=80.52 E-value=1.1 Score=23.29 Aligned_cols=14 Identities=36% Similarity=0.261 Sum_probs=8.5
Q ss_pred ceeEEEEeeeeecC
Q 014150 148 NLIHLELFNCLLKP 161 (430)
Q Consensus 148 ~L~~L~L~~~~~~~ 161 (430)
+|+.|+|++|.+..
T Consensus 1 ~L~~Ldls~n~l~~ 14 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS 14 (22)
T ss_dssp TESEEEETSSEESE
T ss_pred CccEEECCCCcCEe
Confidence 36667777665543
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=73.27 E-value=1.6 Score=21.08 Aligned_cols=9 Identities=44% Similarity=0.722 Sum_probs=3.2
Q ss_pred cceEEeeeE
Q 014150 171 LKSLDLQHI 179 (430)
Q Consensus 171 L~~L~L~~~ 179 (430)
|+.|+|++|
T Consensus 3 L~~L~l~~n 11 (17)
T PF13504_consen 3 LRTLDLSNN 11 (17)
T ss_dssp -SEEEETSS
T ss_pred cCEEECCCC
Confidence 344444433
No 80
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=71.04 E-value=0.83 Score=36.72 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=49.9
Q ss_pred HhCCceEEEEEecCCCcccCCCccc-ccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechh
Q 014150 120 SRSCVKEFILEIWKGQRYKVPSSLF-LCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQD 184 (430)
Q Consensus 120 ~~~~l~~l~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~ 184 (430)
..++.+-..++++....-.+|..+. ..++.++|+|.++.+.+ |..+..+|.|+.|++..+.+...
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~ 115 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAE 115 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccc
Confidence 3466666567777666567887654 45799999999998876 66688999999999999987644
No 81
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=68.88 E-value=9.5 Score=26.65 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=32.3
Q ss_pred cccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150 299 VDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 338 (430)
Q Consensus 299 ~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 338 (430)
.+|+.+.+........++.-+..+++++|.|+++.|....
T Consensus 5 ~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~ 44 (72)
T smart00579 5 SSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVET 44 (72)
T ss_pred heEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeec
Confidence 4688888865555667788899999999999999998754
No 82
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=66.69 E-value=3.8 Score=38.95 Aligned_cols=57 Identities=25% Similarity=0.287 Sum_probs=27.3
Q ss_pred cCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeec
Q 014150 146 CQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMN 203 (430)
Q Consensus 146 ~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~ 203 (430)
.++|+.|+|++|.+.. +..|.+...+++|.|..+.+..- -..++.+...|+.|+|.+
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v-~~~~f~~ls~L~tL~L~~ 331 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFV-SSGMFQGLSGLKTLSLYD 331 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHH-HHHhhhccccceeeeecC
Confidence 3555555555555443 33445555555555555543211 123344445555555543
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=63.06 E-value=4.9 Score=22.27 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=16.1
Q ss_pred CCcceEEeeeEEechhhHHHH
Q 014150 169 RNLKSLDLQHITLSQDVFENL 189 (430)
Q Consensus 169 ~~L~~L~L~~~~~~~~~l~~l 189 (430)
++|++|+|+++.+.++....+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 578999999998877665444
No 84
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=59.25 E-value=14 Score=28.98 Aligned_cols=56 Identities=25% Similarity=0.313 Sum_probs=24.2
Q ss_pred ccCceeEEEEeee-eecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEee
Q 014150 145 LCQNLIHLELFNC-LLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM 202 (430)
Q Consensus 145 ~~~~L~~L~L~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~ 202 (430)
.|.+|+.+.+... .-.....|.++++|+.+.+... +..- -...+.+|+.|+.+.+.
T Consensus 10 ~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i-~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 10 NCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSI-GDNAFSNCKSLESITFP 66 (129)
T ss_dssp T-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEET
T ss_pred CCCCCCEEEECCCeeEeChhhccccccccccccccc-cccc-ceeeeeccccccccccc
Confidence 4567777776532 2222345667777777776542 1110 12235566666666664
No 85
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=57.96 E-value=2.8 Score=41.03 Aligned_cols=35 Identities=23% Similarity=0.126 Sum_probs=14.8
Q ss_pred cCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEE
Q 014150 146 CQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHIT 180 (430)
Q Consensus 146 ~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~ 180 (430)
+++|+.|+++++.+....++..++.|+.|++.++.
T Consensus 117 ~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 117 LVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNL 151 (414)
T ss_pred hhcchheeccccccccccchhhccchhhheeccCc
Confidence 34444444444444433333334444444444443
No 86
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=49.96 E-value=1.8 Score=44.41 Aligned_cols=37 Identities=27% Similarity=0.162 Sum_probs=19.7
Q ss_pred CCCCcceEEeeeEEechhhHHHHhhcCccccceEeec
Q 014150 167 GFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMN 203 (430)
Q Consensus 167 ~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~ 203 (430)
++.+|+.|+++++-+.+-.--..+.....|.+|.|.+
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence 4556666666666554332222344455566666664
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=49.72 E-value=0.21 Score=49.48 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=40.5
Q ss_pred CCCcccccCceeEEEEeeeeecCCC------CCCCC-CCcceEEeeeEEechh---hHHHHhhcCccccceEeeccC
Q 014150 139 VPSSLFLCQNLIHLELFNCLLKPPS------TFKGF-RNLKSLDLQHITLSQD---VFENLISSSPTLERLTLMNFD 205 (430)
Q Consensus 139 lp~~~~~~~~L~~L~L~~~~~~~~~------~~~~~-~~L~~L~L~~~~~~~~---~l~~l~s~cp~Le~L~l~~c~ 205 (430)
+-..+...++|..|+++++.+.+.. .+... ..|++|.+..|.++++ .+...+..++.|+.|++..+.
T Consensus 107 l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~ 183 (478)
T KOG4308|consen 107 LAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNG 183 (478)
T ss_pred HHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcc
Confidence 3334455678888888887765421 11122 4567777777776543 344445557888888877654
No 88
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=48.13 E-value=12 Score=28.03 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.1
Q ss_pred cccCCCcHHHHHHHHcCCCchhhhh
Q 014150 18 DRLSSLPAHVIDQILSQLPIRDAVR 42 (430)
Q Consensus 18 d~is~LPdelL~~Ils~L~~~d~~r 42 (430)
..++.||.|+-..|+++|+-.|...
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5688999999999999999988743
No 89
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=46.88 E-value=9.4 Score=37.36 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=42.7
Q ss_pred ccccCceeEEEEeeeeecCCCC-CCCCCCcceEEeeeEEech-hhHHHHhhcCccccceEeecc
Q 014150 143 LFLCQNLIHLELFNCLLKPPST-FKGFRNLKSLDLQHITLSQ-DVFENLISSSPTLERLTLMNF 204 (430)
Q Consensus 143 ~~~~~~L~~L~L~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~-~~l~~l~s~cp~Le~L~l~~c 204 (430)
+..+.+|..|++.++.+..... ...+++|+.|+|+++.|+. ..+. .++.|+.|.+.+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGN 150 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh----hccchhhheeccC
Confidence 4456889999999988877555 6789999999999988754 2333 3444888888764
No 90
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=40.03 E-value=15 Score=19.61 Aligned_cols=15 Identities=47% Similarity=0.651 Sum_probs=9.8
Q ss_pred CCCcceEEeeeEEec
Q 014150 168 FRNLKSLDLQHITLS 182 (430)
Q Consensus 168 ~~~L~~L~L~~~~~~ 182 (430)
+++|+.|+|.++.+.
T Consensus 1 L~~L~~L~L~~N~l~ 15 (26)
T smart00369 1 LPNLRELDLSNNQLS 15 (26)
T ss_pred CCCCCEEECCCCcCC
Confidence 356777777777643
No 91
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=40.03 E-value=15 Score=19.61 Aligned_cols=15 Identities=47% Similarity=0.651 Sum_probs=9.8
Q ss_pred CCCcceEEeeeEEec
Q 014150 168 FRNLKSLDLQHITLS 182 (430)
Q Consensus 168 ~~~L~~L~L~~~~~~ 182 (430)
+++|+.|+|.++.+.
T Consensus 1 L~~L~~L~L~~N~l~ 15 (26)
T smart00370 1 LPNLRELDLSNNQLS 15 (26)
T ss_pred CCCCCEEECCCCcCC
Confidence 356777777777643
No 92
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=37.89 E-value=30 Score=31.16 Aligned_cols=32 Identities=25% Similarity=0.167 Sum_probs=27.3
Q ss_pred CCcccCCCcHHHHHHHHcCCC-chhhhhhhhhh
Q 014150 16 ELDRLSSLPAHVIDQILSQLP-IRDAVRTSVLS 47 (430)
Q Consensus 16 ~~d~is~LPdelL~~Ils~L~-~~d~~r~s~vs 47 (430)
.+--+.+||.|++..|+.+|+ -+|++.++.+-
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~ 230 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAW 230 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHHHhh
Confidence 345689999999999999997 79999888773
No 93
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=31.32 E-value=7.6 Score=38.85 Aligned_cols=83 Identities=24% Similarity=0.349 Sum_probs=44.2
Q ss_pred cCCCcccccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeCC-
Q 014150 138 KVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAP- 215 (430)
Q Consensus 138 ~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p- 215 (430)
.+|..+....+|..|+.+.|.+.. ++..+.+.+|+.|.+..+.+.+- ...+. |=.|..|+++ |+.+..|-+...
T Consensus 157 ~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~l-p~El~--~LpLi~lDfS-cNkis~iPv~fr~ 232 (722)
T KOG0532|consen 157 SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDL-PEELC--SLPLIRLDFS-CNKISYLPVDFRK 232 (722)
T ss_pred cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhC-CHHHh--CCceeeeecc-cCceeecchhhhh
Confidence 455555555677777777776554 44455666666666666653221 11111 3345566665 455555555433
Q ss_pred --CcceEEEec
Q 014150 216 --NLQFFDIGG 224 (430)
Q Consensus 216 --~L~~L~l~~ 224 (430)
.|..|.+.+
T Consensus 233 m~~Lq~l~Len 243 (722)
T KOG0532|consen 233 MRHLQVLQLEN 243 (722)
T ss_pred hhhheeeeecc
Confidence 444445544
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=28.05 E-value=69 Score=32.17 Aligned_cols=88 Identities=18% Similarity=0.158 Sum_probs=49.5
Q ss_pred ccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEe--
Q 014150 232 ENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRIN-- 309 (430)
Q Consensus 232 ~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-- 309 (430)
.+.|.+..+.++...-. +-+.+..+-...|+|..|.|+++........+.. ++ ....|+.|-+...
T Consensus 215 ~n~p~i~sl~lsnNrL~---------~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~-K~--k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLY---------HLDALSSLSQIAPKLKTLDLSHNHSKISSESELD-KL--KGLPLEELVLEGNPL 282 (585)
T ss_pred cCCcceeeeecccchhh---------chhhhhHHHHhcchhheeecccchhhhcchhhhh-hh--cCCCHHHeeecCCcc
Confidence 35566666666543322 2344556667789999999998833221111111 11 2335777777432
Q ss_pred ---eCChhhHHHHHHHHhcCCCccEEE
Q 014150 310 ---FNDLEENLAALCLLRSSPNLQELE 333 (430)
Q Consensus 310 ---~~~~~~~~~l~~ll~~~p~L~~L~ 333 (430)
+.... ..+..+.+.+|+|..|+
T Consensus 283 c~tf~~~s--~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 283 CTTFSDRS--EYVSAIRELFPKLLRLD 307 (585)
T ss_pred ccchhhhH--HHHHHHHHhcchheeec
Confidence 11122 23557788999999886
No 95
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=26.83 E-value=16 Score=33.93 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=30.9
Q ss_pred cCCCcHHHHHHHHcCCCchhhhhhhhhhhhhHhh
Q 014150 20 LSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYK 53 (430)
Q Consensus 20 is~LPdelL~~Ils~L~~~d~~r~s~vskrWr~l 53 (430)
+..+|+++++.|++++..++++++|.|++|-..+
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~ 41 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKEL 41 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhh
Confidence 4568999999999999999999999999999764
No 96
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=24.43 E-value=39 Score=18.43 Aligned_cols=13 Identities=38% Similarity=0.595 Sum_probs=8.4
Q ss_pred CCcceEEeeeEEe
Q 014150 169 RNLKSLDLQHITL 181 (430)
Q Consensus 169 ~~L~~L~L~~~~~ 181 (430)
.+|+.|+|..+.|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 4666777766655
No 97
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=23.01 E-value=63 Score=32.46 Aligned_cols=37 Identities=30% Similarity=0.447 Sum_probs=21.6
Q ss_pred CCCCcceEEeeeEEe-chhhHHHHhhcCccccceEeec
Q 014150 167 GFRNLKSLDLQHITL-SQDVFENLISSSPTLERLTLMN 203 (430)
Q Consensus 167 ~~~~L~~L~L~~~~~-~~~~l~~l~s~cp~Le~L~l~~ 203 (430)
++|.+..++|+++++ .-+.+..+....|.|+.|+|+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~ 253 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSH 253 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeeccc
Confidence 456666666666653 2344555555666666666664
No 98
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=22.27 E-value=25 Score=35.38 Aligned_cols=47 Identities=26% Similarity=0.402 Sum_probs=32.2
Q ss_pred CcccCCCcccccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEec
Q 014150 135 QRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLS 182 (430)
Q Consensus 135 ~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~ 182 (430)
....+|..+. +=.|.+|+++.|.+.. |..|.++..|++|.|.++...
T Consensus 200 ~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 200 HLEDLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhCCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence 3345666655 5567778887776654 666777788888888777653
No 99
>PF01827 FTH: FTH domain; InterPro: IPR002900 This domain has no known function, it is presumed to be a protein-protein interaction module. It is found in many proteins from Caenorhabditis elegans and Caenorhabditis briggsae. The domain is found associated with, and C-terminal to, the cyclin-like F-box IPR001810 from INTERPRO.
Probab=20.61 E-value=4e+02 Score=20.93 Aligned_cols=116 Identities=9% Similarity=0.205 Sum_probs=64.8
Q ss_pred HHHHHHHHHHh-CCCceeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCcccCCCcc--cccCceeEEEEeee
Q 014150 81 LVNIVDHVLLL-HNGPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSL--FLCQNLIHLELFNC 157 (430)
Q Consensus 81 ~~~~v~~~l~~-~~~~l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~~~~~lp~~~--~~~~~L~~L~L~~~ 157 (430)
+.+.+...+.+ +.-.++++.+... ....+...+.+.-...++++.+ ........+...+ -.+.+++.+.+.+.
T Consensus 3 ~~~~l~~~l~s~~~l~vk~l~i~~~---~~~~~~~iL~~l~p~~L~~i~i-~~~~~~~~~~~i~~~eqWk~~k~~~i~~~ 78 (142)
T PF01827_consen 3 FFEKLQEILKSKHKLKVKKLKINSL---NQSEVLSILPFLDPGVLEEIRI-NDEEEEEDFDEIVELEQWKNAKEFKIGGF 78 (142)
T ss_pred HHHHHHHHHcCCCCeeEEEEEEEcC---CHHHHHHHHhcCCCCcCEEEEC-cCcccccchhheeehHHhceeheeEeccc
Confidence 34455566655 2224677887763 4467777777665567888888 1112222333322 23578888888776
Q ss_pred eecCCCCCCCCCCcceEEeeeEEechhhHHHH---hhcCccccceEe
Q 014150 158 LLKPPSTFKGFRNLKSLDLQHITLSQDVFENL---ISSSPTLERLTL 201 (430)
Q Consensus 158 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l---~s~cp~Le~L~l 201 (430)
.... ..+.++.++....+.--.++.+++..+ +...|..+...+
T Consensus 79 ~~~~-~~l~~f~h~~~~~i~~~~~t~~di~~l~~~l~~~~~~~~~~i 124 (142)
T PF01827_consen 79 VIDS-FPLENFSHFEKFNIHFESITVEDIWKLKENLLKSPNFKYFRI 124 (142)
T ss_pred cccc-HHHHhCCCccEEEEEEEeCCHHHHHHHHHHHcCCCCceEEEE
Confidence 4432 134466777777775555666554443 334444444444
No 100
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=20.03 E-value=71 Score=17.51 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=12.7
Q ss_pred HHHhcCCCccEEEEee
Q 014150 321 CLLRSSPNLQELEMLA 336 (430)
Q Consensus 321 ~ll~~~p~L~~L~l~~ 336 (430)
.++..+|+|+.|+...
T Consensus 7 ~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 7 KVIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHHCCccceecccc
Confidence 4678899999998754
Done!