Query 014150
Match_columns 430
No_of_seqs 162 out of 2084
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 06:22:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.8 1.9E-20 6.6E-25 190.4 14.3 181 21-205 14-231 (592)
2 2p1m_B Transport inhibitor res 99.8 9.7E-21 3.3E-25 192.7 11.5 184 17-204 3-221 (594)
3 2ast_B S-phase kinase-associat 99.8 6.4E-21 2.2E-25 180.0 1.2 142 17-205 6-153 (336)
4 4fcg_A Uncharacterized protein 99.3 3.2E-12 1.1E-16 119.7 9.6 196 119-339 78-289 (328)
5 3ogk_B Coronatine-insensitive 99.1 5.4E-11 1.9E-15 120.6 7.0 211 167-399 291-524 (592)
6 2ast_B S-phase kinase-associat 99.1 2.5E-11 8.4E-16 114.0 3.8 204 114-338 38-258 (336)
7 1z7x_W Ribonuclease inhibitor; 99.1 2.7E-12 9.4E-17 126.0 -3.3 288 95-399 4-324 (461)
8 4fmz_A Internalin; leucine ric 99.1 1.8E-10 6E-15 108.7 7.9 243 122-399 66-322 (347)
9 2z80_A TOLL-like receptor 2, v 99.1 7E-10 2.4E-14 104.9 11.7 111 265-386 217-329 (353)
10 1z7x_W Ribonuclease inhibitor; 99.0 1.4E-11 4.7E-16 121.0 -2.2 184 148-338 86-295 (461)
11 2ca6_A RAN GTPase-activating p 99.0 1.3E-10 4.6E-15 111.3 4.2 63 143-205 56-133 (386)
12 2p1m_B Transport inhibitor res 99.0 2.6E-10 8.8E-15 115.6 5.4 233 139-396 281-539 (594)
13 2z81_A CD282 antigen, TOLL-lik 98.9 2.1E-09 7.1E-14 107.9 10.2 73 265-339 191-263 (549)
14 4fcg_A Uncharacterized protein 98.9 1.5E-10 5E-15 108.4 1.5 219 92-338 79-312 (328)
15 2z80_A TOLL-like receptor 2, v 98.9 1.1E-08 3.9E-13 96.5 14.4 159 144-339 73-234 (353)
16 1o6v_A Internalin A; bacterial 98.9 3.1E-09 1.1E-13 104.4 9.5 75 122-202 90-164 (466)
17 1ogq_A PGIP-2, polygalacturona 98.9 9E-10 3.1E-14 102.3 5.3 194 122-338 76-279 (313)
18 1o6v_A Internalin A; bacterial 98.9 2E-09 7E-14 105.7 7.7 142 121-282 67-211 (466)
19 3oja_A Leucine-rich immune mol 98.9 4.4E-10 1.5E-14 111.0 1.8 209 123-371 35-248 (487)
20 1ozn_A Reticulon 4 receptor; N 98.9 1.6E-09 5.4E-14 99.2 5.1 58 147-205 32-91 (285)
21 3zyi_A Leucine-rich repeat-con 98.9 3.5E-10 1.2E-14 110.7 0.8 192 122-338 75-277 (452)
22 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 1.8E-09 6.1E-14 71.3 3.8 39 16-54 5-43 (53)
23 3v47_A TOLL-like receptor 5B a 98.8 3.4E-10 1.2E-14 110.8 0.3 112 266-399 295-406 (455)
24 3o53_A Protein LRIM1, AGAP0063 98.8 1E-09 3.5E-14 102.1 3.5 244 110-396 20-270 (317)
25 1xku_A Decorin; proteoglycan, 98.8 1E-09 3.4E-14 102.8 3.4 169 147-338 52-227 (330)
26 2z81_A CD282 antigen, TOLL-lik 98.8 3.6E-08 1.2E-12 98.8 14.7 144 230-398 118-261 (549)
27 3zyj_A Leucine-rich repeat-con 98.8 6.1E-10 2.1E-14 108.7 1.5 191 122-338 64-266 (440)
28 3t6q_A CD180 antigen; protein- 98.8 2.2E-10 7.6E-15 116.4 -1.7 59 145-204 276-335 (606)
29 2id5_A Lingo-1, leucine rich r 98.8 1E-09 3.5E-14 108.2 3.1 223 142-399 75-307 (477)
30 3zyi_A Leucine-rich repeat-con 98.8 1.3E-09 4.6E-14 106.6 3.9 195 122-338 99-301 (452)
31 1ozn_A Reticulon 4 receptor; N 98.8 1.2E-09 4E-14 100.0 2.7 194 121-338 31-236 (285)
32 2ca6_A RAN GTPase-activating p 98.8 1.6E-10 5.4E-15 110.8 -3.3 211 122-339 60-315 (386)
33 3v47_A TOLL-like receptor 5B a 98.8 2.2E-09 7.4E-14 105.1 4.3 103 265-385 318-422 (455)
34 4fmz_A Internalin; leucine ric 98.8 5.6E-09 1.9E-13 98.3 6.8 251 94-398 88-343 (347)
35 3zyj_A Leucine-rich repeat-con 98.8 1.6E-09 5.4E-14 105.7 2.9 194 122-338 88-290 (440)
36 3rgz_A Protein brassinosteroid 98.8 1E-09 3.5E-14 114.6 1.3 194 122-338 100-305 (768)
37 3t6q_A CD180 antigen; protein- 98.8 2.2E-09 7.5E-14 109.1 3.6 244 123-399 279-534 (606)
38 3rgz_A Protein brassinosteroid 98.8 1.1E-09 3.6E-14 114.6 0.6 66 139-204 285-353 (768)
39 2o6q_A Variable lymphocyte rec 98.7 4.8E-09 1.6E-13 95.2 4.6 64 138-204 30-95 (270)
40 2z66_A Variable lymphocyte rec 98.7 1.4E-09 4.9E-14 100.5 0.9 230 122-383 28-273 (306)
41 3o6n_A APL1; leucine-rich repe 98.7 7E-09 2.4E-13 99.4 5.8 145 215-399 205-350 (390)
42 1h6u_A Internalin H; cell adhe 98.7 1.1E-08 3.7E-13 94.7 6.7 185 122-339 41-229 (308)
43 3rfs_A Internalin B, repeat mo 98.7 4.2E-09 1.4E-13 95.7 3.8 80 122-205 41-120 (272)
44 2z63_A TOLL-like receptor 4, v 98.7 1.3E-08 4.6E-13 102.4 7.8 239 122-399 282-529 (570)
45 1ogq_A PGIP-2, polygalacturona 98.7 7.2E-09 2.5E-13 96.2 5.4 194 122-338 50-255 (313)
46 2id5_A Lingo-1, leucine rich r 98.7 1.1E-08 3.6E-13 100.9 6.6 176 142-339 123-308 (477)
47 3o6n_A APL1; leucine-rich repe 98.7 7.1E-09 2.4E-13 99.3 5.1 119 122-244 69-195 (390)
48 3oja_B Anopheles plasmodium-re 98.7 4.6E-09 1.6E-13 106.5 3.9 62 266-338 274-335 (597)
49 3vq2_A TLR4, TOLL-like recepto 98.7 1.7E-09 5.9E-14 109.9 0.2 232 143-399 281-532 (606)
50 4ecn_A Leucine-rich repeat pro 98.7 3.2E-09 1.1E-13 111.2 2.2 146 122-283 548-710 (876)
51 1h6u_A Internalin H; cell adhe 98.7 1.2E-08 4.2E-13 94.4 5.9 185 145-370 39-227 (308)
52 4ezg_A Putative uncharacterize 98.7 4E-08 1.4E-12 84.6 7.6 55 147-204 44-98 (197)
53 3bz5_A Internalin-J, INLJ; leu 98.6 1.8E-08 6.2E-13 98.6 5.3 180 122-340 64-246 (457)
54 2ft3_A Biglycan; proteoglycan, 98.6 5.2E-09 1.8E-13 98.0 1.3 105 138-246 47-158 (332)
55 2z63_A TOLL-like receptor 4, v 98.6 7.5E-09 2.6E-13 104.2 2.5 231 123-385 305-546 (570)
56 4ecn_A Leucine-rich repeat pro 98.6 1.9E-08 6.6E-13 105.4 5.4 201 122-339 448-709 (876)
57 3goz_A Leucine-rich repeat-con 98.6 2.6E-09 8.8E-14 101.4 -1.2 240 146-399 21-295 (362)
58 2z66_A Variable lymphocyte rec 98.6 2.1E-08 7.2E-13 92.6 4.6 228 137-399 20-259 (306)
59 3j0a_A TOLL-like receptor 5; m 98.6 4.9E-08 1.7E-12 103.1 7.8 60 122-182 97-161 (844)
60 4eco_A Uncharacterized protein 98.6 4.4E-09 1.5E-13 107.5 -0.4 146 122-283 305-470 (636)
61 4ezg_A Putative uncharacterize 98.6 6.9E-08 2.4E-12 83.0 7.2 79 122-204 44-122 (197)
62 3oja_B Anopheles plasmodium-re 98.6 2E-08 6.8E-13 101.9 4.4 119 122-244 75-201 (597)
63 3m19_A Variable lymphocyte rec 98.6 3.2E-08 1.1E-12 88.6 5.3 66 137-205 27-94 (251)
64 3bz5_A Internalin-J, INLJ; leu 98.6 3.2E-08 1.1E-12 96.8 5.3 199 94-337 64-264 (457)
65 2z62_A TOLL-like receptor 4, v 98.6 1.2E-08 4.3E-13 92.7 2.0 58 147-205 28-87 (276)
66 3vq2_A TLR4, TOLL-like recepto 98.6 1.7E-08 5.7E-13 102.5 2.7 175 145-339 326-509 (606)
67 3o53_A Protein LRIM1, AGAP0063 98.6 5.3E-09 1.8E-13 97.3 -1.0 214 145-399 32-248 (317)
68 1wwl_A Monocyte differentiatio 98.6 5.5E-09 1.9E-13 97.0 -0.9 175 145-339 93-286 (312)
69 2ft3_A Biglycan; proteoglycan, 98.6 5.5E-09 1.9E-13 97.8 -0.9 117 266-397 213-329 (332)
70 1h6t_A Internalin B; cell adhe 98.6 2.3E-08 7.9E-13 91.7 3.2 166 122-338 46-211 (291)
71 3oja_A Leucine-rich immune mol 98.5 1.2E-08 4.1E-13 100.7 1.1 214 145-399 32-248 (487)
72 1xku_A Decorin; proteoglycan, 98.5 4E-08 1.4E-12 91.8 4.6 177 140-339 93-275 (330)
73 2ell_A Acidic leucine-rich nuc 98.5 1.2E-07 4.1E-12 79.2 6.8 137 122-283 24-160 (168)
74 3j0a_A TOLL-like receptor 5; m 98.5 1.2E-07 4E-12 100.2 8.2 119 122-244 266-390 (844)
75 2xwt_C Thyrotropin receptor; s 98.5 4E-08 1.4E-12 87.3 3.8 170 147-338 31-216 (239)
76 3goz_A Leucine-rich repeat-con 98.5 4E-09 1.4E-13 100.0 -3.0 39 300-338 226-264 (362)
77 1wwl_A Monocyte differentiatio 98.5 1.5E-08 5.1E-13 94.0 0.8 193 120-338 93-307 (312)
78 3rfs_A Internalin B, repeat mo 98.5 6.3E-08 2.1E-12 87.9 4.8 97 144-244 38-142 (272)
79 4eco_A Uncharacterized protein 98.5 5.6E-08 1.9E-12 99.2 5.0 123 122-245 206-363 (636)
80 2ra8_A Uncharacterized protein 98.5 6.9E-08 2.3E-12 91.0 4.8 166 167-338 137-318 (362)
81 1p9a_G Platelet glycoprotein I 98.5 2.4E-08 8.1E-13 91.6 1.5 64 266-338 120-183 (290)
82 3e4g_A ATP synthase subunit S, 98.5 9.5E-08 3.2E-12 79.6 4.8 96 137-248 51-152 (176)
83 3g06_A SSPH2 (leucine-rich rep 98.5 2E-07 6.9E-12 94.3 7.8 91 122-225 61-151 (622)
84 4glp_A Monocyte differentiatio 98.5 1.2E-08 4.1E-13 94.5 -1.1 107 96-205 66-180 (310)
85 2z62_A TOLL-like receptor 4, v 98.5 5.7E-08 1.9E-12 88.3 3.0 121 122-245 28-159 (276)
86 1m9s_A Internalin B; cell inva 98.4 4.3E-08 1.5E-12 99.0 2.1 115 122-243 43-161 (605)
87 2z7x_B TOLL-like receptor 1, v 98.4 7.4E-07 2.5E-11 88.6 10.9 104 138-245 14-125 (520)
88 2o6q_A Variable lymphocyte rec 98.4 2.2E-07 7.5E-12 84.1 5.7 177 122-338 37-216 (270)
89 1ziw_A TOLL-like receptor 3; i 98.4 5.9E-08 2E-12 99.9 1.9 222 148-399 382-620 (680)
90 2z7x_B TOLL-like receptor 1, v 98.4 7.9E-07 2.7E-11 88.4 9.3 57 147-204 302-358 (520)
91 1p9a_G Platelet glycoprotein I 98.4 4.2E-07 1.4E-11 83.2 6.5 176 137-339 23-207 (290)
92 1xeu_A Internalin C; cellular 98.4 2.4E-07 8.1E-12 83.6 4.4 141 144-308 38-181 (263)
93 1ziw_A TOLL-like receptor 3; i 98.3 1.2E-07 4E-12 97.7 2.5 122 122-245 381-514 (680)
94 2je0_A Acidic leucine-rich nuc 98.3 2.1E-07 7.1E-12 76.0 3.2 83 122-205 17-99 (149)
95 3a79_B TLR6, VLRB.59, TOLL-lik 98.3 1.8E-06 6E-11 86.8 10.1 104 138-245 45-156 (562)
96 2o6s_A Variable lymphocyte rec 98.3 3E-07 1E-11 79.6 3.3 156 137-339 20-177 (208)
97 1h6t_A Internalin B; cell adhe 98.3 1.2E-06 4.1E-11 80.2 7.4 98 96-205 48-145 (291)
98 2xwt_C Thyrotropin receptor; s 98.2 7E-07 2.4E-11 79.1 4.9 188 122-337 31-236 (239)
99 3g06_A SSPH2 (leucine-rich rep 98.2 9.7E-07 3.3E-11 89.3 6.0 59 267-339 238-296 (622)
100 3m19_A Variable lymphocyte rec 98.2 1.1E-06 3.6E-11 78.6 5.3 151 122-308 35-188 (251)
101 2v9t_B SLIT homolog 2 protein 98.2 1.9E-06 6.5E-11 75.4 6.8 155 137-327 24-181 (220)
102 4ay9_X Follicle-stimulating ho 98.2 7.7E-07 2.6E-11 83.8 4.3 181 137-339 22-214 (350)
103 3un9_A NLR family member X1; l 98.2 3.1E-08 1.1E-12 94.1 -5.4 170 147-339 72-251 (372)
104 3a79_B TLR6, VLRB.59, TOLL-lik 98.2 2.5E-06 8.4E-11 85.7 7.9 55 148-203 332-386 (562)
105 3e6j_A Variable lymphocyte rec 98.2 4.5E-06 1.5E-10 73.4 8.7 134 137-307 32-167 (229)
106 2ell_A Acidic leucine-rich nuc 98.2 8.2E-07 2.8E-11 74.0 3.4 71 265-340 90-160 (168)
107 4g8a_A TOLL-like receptor 4; l 98.1 4.5E-06 1.6E-10 84.7 8.9 66 137-205 44-111 (635)
108 3cvr_A Invasion plasmid antige 98.1 2.4E-06 8.3E-11 85.4 5.3 112 122-245 59-170 (571)
109 2ra8_A Uncharacterized protein 98.1 9.2E-06 3.2E-10 76.4 8.7 214 80-314 92-322 (362)
110 2je0_A Acidic leucine-rich nuc 98.0 1.4E-06 4.7E-11 71.1 2.3 55 147-204 17-74 (149)
111 4glp_A Monocyte differentiatio 98.0 2.8E-06 9.6E-11 78.4 4.7 187 95-308 92-303 (310)
112 1m9s_A Internalin B; cell inva 98.0 3.5E-06 1.2E-10 85.0 5.5 143 121-283 64-210 (605)
113 2e31_A FBS1, F-box only protei 98.0 2.9E-06 9.9E-11 76.4 3.6 37 17-53 48-85 (297)
114 2v70_A SLIT-2, SLIT homolog 2 98.0 4.5E-06 1.5E-10 72.9 4.7 151 138-324 25-179 (220)
115 2xot_A Amphoterin-induced prot 97.9 4.6E-06 1.6E-10 78.8 3.8 134 138-283 32-176 (361)
116 2v70_A SLIT-2, SLIT homolog 2 97.9 9.1E-06 3.1E-10 70.9 5.1 152 150-339 14-165 (220)
117 3l2o_B F-box only protein 4; s 97.9 3.1E-06 1E-10 75.4 1.5 34 20-53 5-38 (312)
118 1jl5_A Outer protein YOPM; leu 97.9 5.8E-06 2E-10 80.6 3.4 175 122-340 195-370 (454)
119 4g8a_A TOLL-like receptor 4; l 97.9 6.3E-06 2.1E-10 83.7 3.6 120 122-245 52-183 (635)
120 2v9t_B SLIT homolog 2 protein 97.8 1.1E-05 3.7E-10 70.5 4.4 130 122-282 32-164 (220)
121 1ds9_A Outer arm dynein; leuci 97.8 4E-06 1.4E-10 71.9 1.4 64 139-204 40-103 (198)
122 2o6s_A Variable lymphocyte rec 97.8 1.5E-05 5.1E-10 68.8 4.7 130 122-282 28-160 (208)
123 3e4g_A ATP synthase subunit S, 97.8 6.3E-06 2.1E-10 68.5 2.1 86 122-209 61-154 (176)
124 1xeu_A Internalin C; cellular 97.8 6.7E-06 2.3E-10 73.9 2.4 141 122-283 41-185 (263)
125 1a9n_A U2A', U2A'; complex (nu 97.8 4.7E-06 1.6E-10 70.0 1.1 58 144-204 16-74 (176)
126 1jl5_A Outer protein YOPM; leu 97.7 2.6E-05 8.8E-10 76.0 5.7 176 123-339 174-349 (454)
127 1a9n_A U2A', U2A'; complex (nu 97.7 1.3E-05 4.5E-10 67.2 3.1 132 122-282 19-152 (176)
128 3e6j_A Variable lymphocyte rec 97.7 2.2E-05 7.6E-10 68.9 4.6 129 122-282 40-171 (229)
129 2wfh_A SLIT homolog 2 protein 97.7 2.6E-05 8.9E-10 66.5 4.2 36 266-306 98-133 (193)
130 1w8a_A SLIT protein; signaling 97.6 2.4E-05 8.2E-10 66.6 3.4 65 137-204 21-88 (192)
131 2o6r_A Variable lymphocyte rec 97.6 5.2E-05 1.8E-09 63.5 5.2 57 147-204 28-86 (177)
132 3v7d_B Cell division control p 97.6 1.4E-05 4.9E-10 77.7 1.8 41 16-56 11-51 (464)
133 2xot_A Amphoterin-induced prot 97.6 4.1E-05 1.4E-09 72.2 4.6 147 122-283 39-202 (361)
134 3un9_A NLR family member X1; l 97.5 2.7E-05 9.3E-10 73.7 2.4 149 167-339 70-223 (372)
135 1dce_A Protein (RAB geranylger 97.5 5.8E-05 2E-09 75.6 4.3 105 148-283 442-546 (567)
136 1dce_A Protein (RAB geranylger 97.5 2.4E-05 8.3E-10 78.3 1.3 125 170-333 442-566 (567)
137 4ay9_X Follicle-stimulating ho 97.4 5.1E-05 1.7E-09 71.2 3.0 59 265-336 197-255 (350)
138 2wfh_A SLIT homolog 2 protein 97.4 0.00012 4.2E-09 62.3 4.6 65 138-203 45-111 (193)
139 2ovr_B FBW7, F-BOX/WD repeat p 97.4 7.6E-05 2.6E-09 72.2 3.6 38 16-53 15-52 (445)
140 1p22_A F-BOX/WD-repeat protein 97.4 4.5E-05 1.5E-09 73.7 1.7 37 16-52 7-47 (435)
141 1io0_A Tropomodulin; LRR prote 97.3 0.00012 4.2E-09 61.8 3.0 39 300-338 122-162 (185)
142 3cvr_A Invasion plasmid antige 97.2 0.00032 1.1E-08 70.1 6.1 181 95-311 60-242 (571)
143 1w8a_A SLIT protein; signaling 97.2 0.00027 9.2E-09 60.0 4.5 80 123-205 30-113 (192)
144 3g39_A Variable lymphocyte rec 97.0 0.00064 2.2E-08 56.4 5.0 65 137-204 22-88 (170)
145 2r9u_A Variable lymphocyte rec 97.0 0.00075 2.6E-08 56.2 5.0 65 137-204 25-91 (174)
146 3sb4_A Hypothetical leucine ri 96.9 0.00032 1.1E-08 65.0 2.7 169 146-338 100-308 (329)
147 1ds9_A Outer arm dynein; leuci 96.9 0.00019 6.5E-09 61.3 0.8 98 121-225 47-150 (198)
148 4b8c_D Glucose-repressible alc 96.9 0.00019 6.6E-09 74.1 0.4 102 140-244 217-325 (727)
149 2o6r_A Variable lymphocyte rec 96.7 0.0016 5.6E-08 54.1 5.1 81 122-205 28-111 (177)
150 3sb4_A Hypothetical leucine ri 96.7 0.0012 4E-08 61.2 4.5 99 214-334 225-328 (329)
151 2r9u_A Variable lymphocyte rec 96.5 0.0018 6.1E-08 53.9 3.9 80 122-204 33-115 (174)
152 3g39_A Variable lymphocyte rec 96.3 0.003 1E-07 52.2 4.4 80 122-204 30-112 (170)
153 4fdw_A Leucine rich hypothetic 96.3 0.0049 1.7E-07 58.7 6.3 33 147-179 157-190 (401)
154 1io0_A Tropomodulin; LRR prote 96.2 0.0017 5.7E-08 54.7 2.3 134 260-399 26-162 (185)
155 4b8c_D Glucose-repressible alc 95.9 0.0011 3.8E-08 68.4 -0.6 79 122-204 224-303 (727)
156 2ifg_A High affinity nerve gro 95.4 0.0065 2.2E-07 56.5 2.9 66 137-204 22-90 (347)
157 3rw6_A Nuclear RNA export fact 95.3 0.0033 1.1E-07 56.0 0.4 80 122-201 170-258 (267)
158 4fdw_A Leucine rich hypothetic 95.2 0.011 3.9E-07 56.2 3.7 89 148-242 136-233 (401)
159 2ifg_A High affinity nerve gro 94.1 0.016 5.5E-07 53.7 1.8 78 122-203 31-112 (347)
160 4fs7_A Uncharacterized protein 93.7 0.077 2.6E-06 50.1 5.8 29 215-243 230-261 (394)
161 3rw6_A Nuclear RNA export fact 92.8 0.033 1.1E-06 49.5 1.4 59 145-205 168-231 (267)
162 4gt6_A Cell surface protein; l 86.8 1.1 3.7E-05 42.1 6.6 118 163-306 259-385 (394)
163 1pgv_A TMD-1, tropomodulin TMD 85.3 0.67 2.3E-05 38.9 3.7 21 317-337 147-167 (197)
164 1pgv_A TMD-1, tropomodulin TMD 84.8 0.25 8.4E-06 41.6 0.8 132 260-401 31-170 (197)
165 4fs7_A Uncharacterized protein 80.8 4.2 0.00014 37.9 7.9 117 146-280 252-376 (394)
166 4gt6_A Cell surface protein; l 76.9 2.3 7.7E-05 39.9 4.6 122 189-337 260-388 (394)
167 3rfe_A Platelet glycoprotein I 73.8 2.4 8.1E-05 32.8 3.2 42 138-181 24-67 (130)
168 4h09_A Hypothetical leucine ri 53.2 6.9 0.00024 36.1 2.7 73 144-222 260-340 (379)
169 4h09_A Hypothetical leucine ri 34.7 23 0.00078 32.5 3.1 95 143-242 236-340 (379)
170 2lz0_A Uncharacterized protein 25.1 48 0.0016 23.9 2.8 13 164-176 15-27 (100)
171 1wey_A Calcipressin 1; structu 23.6 56 0.0019 23.8 2.8 41 387-427 43-83 (104)
172 2kwv_A RAD30 homolog B, DNA po 21.1 1E+02 0.0036 18.5 3.1 22 14-35 15-36 (48)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=1.9e-20 Score=190.36 Aligned_cols=181 Identities=10% Similarity=0.131 Sum_probs=95.3
Q ss_pred CCCcHHHHHHHHcCC-CchhhhhhhhhhhhhHhhcCcCCe-eEEcCCCCCCCCc------------c-----hhH-----
Q 014150 21 SSLPAHVIDQILSQL-PIRDAVRTSVLSKKWRYKWATVPH-LVFDNHCVSTSSQ------------D-----QTF----- 76 (430)
Q Consensus 21 s~LPdelL~~Ils~L-~~~d~~r~s~vskrWr~lw~~~~~-l~~~~~~~~~~~~------------~-----~~~----- 76 (430)
++||||+|.+||+|| +.+|++++++|||||++++...+. +.+.. .+..... + ...
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 92 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLI 92 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCS
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccc
Confidence 389999999999999 899999999999999998543322 22211 1100000 0 000
Q ss_pred --hHhH-HHHHHHHHHHhCCCceeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCC-CcccCCCcccccCceeEE
Q 014150 77 --IKNK-LVNIVDHVLLLHNGPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKG-QRYKVPSSLFLCQNLIHL 152 (430)
Q Consensus 77 --~~~~-~~~~v~~~l~~~~~~l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~-~~~~lp~~~~~~~~L~~L 152 (430)
.... ....+.. +..+...++.+.+..... . .....|+......++++|++..+.. ....++.....|++|++|
T Consensus 93 ~~~~~~~~~~~l~~-l~~~~~~L~~L~L~~~~i-~-~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L 169 (592)
T 3ogk_B 93 PENWGGYVTPWVTE-ISNNLRQLKSVHFRRMIV-S-DLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169 (592)
T ss_dssp CTTSCCBCHHHHHH-HHHHCTTCCEEEEESCBC-C-HHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEE
T ss_pred cccccccchHHHHH-HHhhCCCCCeEEeeccEe-c-HHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEE
Confidence 0000 0000111 111222344444443211 1 1112233222223366666644321 111233333356777777
Q ss_pred EEeeeeecCCC------CCCCCCCcceEEeeeEEec---hhhHHHHhhcCccccceEeeccC
Q 014150 153 ELFNCLLKPPS------TFKGFRNLKSLDLQHITLS---QDVFENLISSSPTLERLTLMNFD 205 (430)
Q Consensus 153 ~L~~~~~~~~~------~~~~~~~L~~L~L~~~~~~---~~~l~~l~s~cp~Le~L~l~~c~ 205 (430)
+|++|.+.+.. ...++++|++|+|.++.++ ...+..++.+||+|++|.+.+|.
T Consensus 170 ~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 170 LMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp ECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred ECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 77777664421 1125677888888777654 45677777888888888888763
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=9.7e-21 Score=192.65 Aligned_cols=184 Identities=17% Similarity=0.198 Sum_probs=100.1
Q ss_pred CcccCCCcHHHHHHHHcCCC-chhhhhhhhhhhhhHhhcC-cCCeeEEcCCCCCCC------------------CcchhH
Q 014150 17 LDRLSSLPAHVIDQILSQLP-IRDAVRTSVLSKKWRYKWA-TVPHLVFDNHCVSTS------------------SQDQTF 76 (430)
Q Consensus 17 ~d~is~LPdelL~~Ils~L~-~~d~~r~s~vskrWr~lw~-~~~~l~~~~~~~~~~------------------~~~~~~ 76 (430)
.|++++||||||.+||+||+ .+|++++++|||||+++.. ....+.+.......+ ......
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 82 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADF 82 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGG
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhc
Confidence 58999999999999999999 9999999999999998721 122233322111000 000000
Q ss_pred h------HhHHHHHHHHHHHhCCCceeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCC-CcccCCCcccccCce
Q 014150 77 I------KNKLVNIVDHVLLLHNGPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKG-QRYKVPSSLFLCQNL 149 (430)
Q Consensus 77 ~------~~~~~~~v~~~l~~~~~~l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~-~~~~lp~~~~~~~~L 149 (430)
. .......+..+. .+...++.+.+..... ....+..... ..+++++|++..+.. ....++.....|++|
T Consensus 83 ~l~~~~~~~~~~~~l~~l~-~~~~~L~~L~L~~~~~-~~~~~~~l~~--~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L 158 (594)
T 2p1m_B 83 NLVPDGWGGYVYPWIEAMS-SSYTWLEEIRLKRMVV-TDDCLELIAK--SFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158 (594)
T ss_dssp TCSCTTSCCBCHHHHHHHH-HHCTTCCEEEEESCBC-CHHHHHHHHH--HCTTCCEEEEESCEEEEHHHHHHHHHHCTTC
T ss_pred ccccccccchhhHHHHHHH-HhCCCCCeEEeeCcEE-cHHHHHHHHH--hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCC
Confidence 0 000001111111 2233466666665421 1111111110 235677776654421 111233434467888
Q ss_pred eEEEEeeeeecCCC-----C-CCCCCCcceEEeeeEE--echhhHHHHhhcCccccceEeecc
Q 014150 150 IHLELFNCLLKPPS-----T-FKGFRNLKSLDLQHIT--LSQDVFENLISSSPTLERLTLMNF 204 (430)
Q Consensus 150 ~~L~L~~~~~~~~~-----~-~~~~~~L~~L~L~~~~--~~~~~l~~l~s~cp~Le~L~l~~c 204 (430)
++|+|++|.+.+.. . ...+++|++|+|.++. +++..+..++..||+|++|.+.+|
T Consensus 159 ~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 88888888765421 1 2267889999998885 666778888888999999998876
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=6.4e-21 Score=179.96 Aligned_cols=142 Identities=18% Similarity=0.187 Sum_probs=81.2
Q ss_pred CcccCCCcHHHHHHHHcCCCchhhhhhhhhhhhhHhhcCc---CCeeEEcCCCCCCCCcchhHhHhHHHHHHHHHHHhCC
Q 014150 17 LDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWAT---VPHLVFDNHCVSTSSQDQTFIKNKLVNIVDHVLLLHN 93 (430)
Q Consensus 17 ~d~is~LPdelL~~Ils~L~~~d~~r~s~vskrWr~lw~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~ 93 (430)
...+++||||++.+||++|+.+|+++++.|||+|+++... +..+++......
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~------------------------- 60 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH------------------------- 60 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC-------------------------
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCC-------------------------
Confidence 3458999999999999999999999999999999998532 223333221111
Q ss_pred CceeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC---CCCCCCCCC
Q 014150 94 GPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP---PSTFKGFRN 170 (430)
Q Consensus 94 ~~l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~---~~~~~~~~~ 170 (430)
...+.....++++.+++.... ....+..++.+++|++|++++|.+.. +..+.++++
T Consensus 61 -------------------~~~~~~~~~~~l~~L~l~~n~--l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 61 -------------------PDVTGRLLSQGVIAFRCPRSF--MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 119 (336)
T ss_dssp -------------------HHHHHHHHHTTCSEEECTTCE--ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred -------------------HHHHHhhhhccceEEEcCCcc--ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence 111122223444444442111 01122224455666666666665532 123445666
Q ss_pred cceEEeeeEEechhhHHHHhhcCccccceEeeccC
Q 014150 171 LKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD 205 (430)
Q Consensus 171 L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~ 205 (430)
|++|+|.++.+++... ..++.|++|++|.+.+|.
T Consensus 120 L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~L~~~~ 153 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIV-NTLAKNSNLVRLNLSGCS 153 (336)
T ss_dssp CSEEECTTCBCCHHHH-HHHTTCTTCSEEECTTCB
T ss_pred CCEEeCcCcccCHHHH-HHHhcCCCCCEEECCCCC
Confidence 6666666666554432 234456666666666663
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.32 E-value=3.2e-12 Score=119.75 Aligned_cols=196 Identities=19% Similarity=0.150 Sum_probs=120.9
Q ss_pred HHhCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCcccc
Q 014150 119 MSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLE 197 (430)
Q Consensus 119 ~~~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le 197 (430)
....+++.+++..... ..+|..+..+++|++|+|++|.+.. |..+.++++|++|+|+++.+. .+...+..+++|+
T Consensus 78 ~~~~~l~~L~L~~n~l--~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 78 ATQPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLR 153 (328)
T ss_dssp HTSTTCCEEEEESSCC--SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCC
T ss_pred ccccceeEEEccCCCc--hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCC
Confidence 3446788888876543 3788888889999999999998765 556788999999999999876 3455578899999
Q ss_pred ceEeeccCCceEEE------------EeCCCcceEEEecccc-c--eeeccCCCceEEEEEEEeeccccccCCCCCcchH
Q 014150 198 RLTLMNFDGFTHLN------------IDAPNLQFFDIGGVFD-D--VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKL 262 (430)
Q Consensus 198 ~L~l~~c~~~~~l~------------i~~p~L~~L~l~~~~~-~--~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~ 262 (430)
.|.+.+|.....+. -..++|+.|++.++.- . ..+..+++|+.|+++.+.....
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l------------ 221 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL------------ 221 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCC------------
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcC------------
Confidence 99999886543221 1256677777665321 1 1245666777777765432211
Q ss_pred HHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150 263 LRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 339 (430)
Q Consensus 263 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 339 (430)
...+..+++|++|+++++.... ..+..+. .+++|+.|+++.+.... .++.-+..+++|+.|+|+++..
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~~~~----~~p~~~~-~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCTALR----NYPPIFG-GRAPLKRLILKDCSNLL----TLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp CGGGGGCTTCCEEECTTCTTCC----BCCCCTT-CCCCCCEEECTTCTTCC----BCCTTGGGCTTCCEEECTTCTT
T ss_pred chhhccCCCCCEEECcCCcchh----hhHHHhc-CCCCCCEEECCCCCchh----hcchhhhcCCCCCEEeCCCCCc
Confidence 1124566777777776643321 1111111 35566666663321111 1223356677777777776543
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.12 E-value=5.4e-11 Score=120.59 Aligned_cols=211 Identities=17% Similarity=0.141 Sum_probs=99.9
Q ss_pred CCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCc---eEEEEeCCCcceEEEec----------c--ccce--
Q 014150 167 GFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGF---THLNIDAPNLQFFDIGG----------V--FDDV-- 229 (430)
Q Consensus 167 ~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~---~~l~i~~p~L~~L~l~~----------~--~~~~-- 229 (430)
.+++|++|+|.++.+++..+..++..||+|++|.+.++-.. ..+.-..++|++|++.+ + ....
T Consensus 291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~ 370 (592)
T 3ogk_B 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370 (592)
T ss_dssp GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH
T ss_pred hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH
Confidence 45666666666666655555556666666666666532110 00111245666666662 1 1100
Q ss_pred --eeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeee----eeehhhcccCCCCCCccccccce
Q 014150 230 --TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSY----FLKYLAIGNVPSRLPRPCVDLNY 303 (430)
Q Consensus 230 --~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~----~~~~~~~~~~~~~~~~~~~~L~~ 303 (430)
....+++|++|++.. ... ....+..+..++++|++|.++.. .+...........+...+++|++
T Consensus 371 ~~l~~~~~~L~~L~l~~-~~l---------~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~ 440 (592)
T 3ogk_B 371 IALAQGCQELEYMAVYV-SDI---------TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR 440 (592)
T ss_dssp HHHHHHCTTCSEEEEEE-SCC---------CHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCE
T ss_pred HHHHhhCccCeEEEeec-CCc---------cHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCE
Confidence 123466666666622 111 22233344444667777776521 11100000000000113556777
Q ss_pred eEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceecccccccccCceEEEEEeeecCccHHHHHHHH
Q 014150 304 LSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFV 383 (430)
Q Consensus 304 L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~e~~~~~~i 383 (430)
|++..+.... ....+..+...+|+|+.|+|..+.... .. -...-..+++|+.+.+.+..- .+ .-+..+
T Consensus 441 L~L~~~~~~l-~~~~~~~~~~~~~~L~~L~L~~n~l~~---~~-----~~~~~~~~~~L~~L~l~~n~l--~~-~~~~~~ 508 (592)
T 3ogk_B 441 FAFYLRQGGL-TDLGLSYIGQYSPNVRWMLLGYVGESD---EG-----LMEFSRGCPNLQKLEMRGCCF--SE-RAIAAA 508 (592)
T ss_dssp EEEECCGGGC-CHHHHHHHHHSCTTCCEEEECSCCSSH---HH-----HHHHHTCCTTCCEEEEESCCC--BH-HHHHHH
T ss_pred EEEecCCCCc-cHHHHHHHHHhCccceEeeccCCCCCH---HH-----HHHHHhcCcccCeeeccCCCC--cH-HHHHHH
Confidence 7775432110 112345555667777777776554210 00 000001246777777776542 11 223334
Q ss_pred HccCCCcceEEEeecC
Q 014150 384 LSNSPVLETMTIKPAS 399 (430)
Q Consensus 384 l~~~~~L~~l~i~~~~ 399 (430)
..+.++|+.+.++.+.
T Consensus 509 ~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 509 VTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHCSSCCEEEEESCB
T ss_pred HHhcCccCeeECcCCc
Confidence 5567888888887765
No 6
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.11 E-value=2.5e-11 Score=114.02 Aligned_cols=204 Identities=14% Similarity=0.162 Sum_probs=120.9
Q ss_pred HHHHHHHhC-CceEEEEEecCCCcccCCCccccc--CceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHH
Q 014150 114 RWILYMSRS-CVKEFILEIWKGQRYKVPSSLFLC--QNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENL 189 (430)
Q Consensus 114 ~wl~~~~~~-~l~~l~l~~~~~~~~~lp~~~~~~--~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l 189 (430)
.|-..+..+ ..+.+++..... . +..+... ++++.|+++++.+.. +..+..+++|+.|+|.++.+++..+..+
T Consensus 38 ~W~~~~~~~~~~~~l~l~~~~~---~-~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~ 113 (336)
T 2ast_B 38 RWYRLASDESLWQTLDLTGKNL---H-PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI 113 (336)
T ss_dssp HHHHHHTCSTTSSEEECTTCBC---C-HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH
T ss_pred HHHHHhcCchhheeeccccccC---C-HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH
Confidence 565544333 356666542211 1 2233344 789999999998865 3445689999999999999988778889
Q ss_pred hhcCccccceEeeccCCceEE---EEeCCCcceEEEeccc--cc----eeeccCCCceEEEEEEEeeccccccCCCCCcc
Q 014150 190 ISSSPTLERLTLMNFDGFTHL---NIDAPNLQFFDIGGVF--DD----VTFENTFHLALVSIGLYVNVKNDQAMGPGNSC 260 (430)
Q Consensus 190 ~s~cp~Le~L~l~~c~~~~~l---~i~~p~L~~L~l~~~~--~~----~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~ 260 (430)
+..|++|++|.+.+|.-.... --..++|++|++.++. .. ..+..+++|++|+++.+... ...
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l---------~~~ 184 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF---------TEK 184 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC---------CHH
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc---------ChH
Confidence 999999999999988421100 0124777777777642 11 12345777777777654211 222
Q ss_pred hHHHHhccCC-CccEEEEeeeee--ehhhcccCCCCCCccccccceeEEEEee-CChhhHHHHHHHHhcCCCccEEEEee
Q 014150 261 KLLRFFVHLP-HIRRLEIQSYFL--KYLAIGNVPSRLPRPCVDLNYLSIRINF-NDLEENLAALCLLRSSPNLQELEMLA 336 (430)
Q Consensus 261 ~~~~~l~~~~-~L~~L~l~~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~ll~~~p~L~~L~l~~ 336 (430)
.+...+..++ +|++|.++++.. ....... ....+++|++|+++.+. .... ....+..+|+|+.|++.+
T Consensus 185 ~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~----~~~~~~~L~~L~l~~~~~l~~~----~~~~l~~l~~L~~L~l~~ 256 (336)
T 2ast_B 185 HVQVAVAHVSETITQLNLSGYRKNLQKSDLST----LVRRCPNLVHLDLSDSVMLKND----CFQEFFQLNYLQHLSLSR 256 (336)
T ss_dssp HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH----HHHHCTTCSEEECTTCTTCCGG----GGGGGGGCTTCCEEECTT
T ss_pred HHHHHHHhcccCCCEEEeCCCcccCCHHHHHH----HHhhCCCCCEEeCCCCCcCCHH----HHHHHhCCCCCCEeeCCC
Confidence 3445566777 777777776532 1000000 01135577777774433 1111 112345667777777777
Q ss_pred cC
Q 014150 337 RP 338 (430)
Q Consensus 337 ~~ 338 (430)
+.
T Consensus 257 ~~ 258 (336)
T 2ast_B 257 CY 258 (336)
T ss_dssp CT
T ss_pred CC
Confidence 64
No 7
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.10 E-value=2.7e-12 Score=126.02 Aligned_cols=288 Identities=15% Similarity=0.054 Sum_probs=166.2
Q ss_pred ceeEEEEEeccCCCcchHHHHHH-HHHhCCceEEEEEecCCCcc---cCCCcccccCceeEEEEeeeeecC--CCCC-CC
Q 014150 95 PILKFKLSHRDLLGVSDIDRWIL-YMSRSCVKEFILEIWKGQRY---KVPSSLFLCQNLIHLELFNCLLKP--PSTF-KG 167 (430)
Q Consensus 95 ~l~~l~l~~~~~~~~~~v~~wl~-~~~~~~l~~l~l~~~~~~~~---~lp~~~~~~~~L~~L~L~~~~~~~--~~~~-~~ 167 (430)
.++.+.+.+... ... .|.. ....++++.+++..+..... .++..+..+++|++|+|++|.+.+ +..+ ..
T Consensus 4 ~l~~L~Ls~~~l---~~~-~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 4 DIQSLDIQCEEL---SDA-RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEESCCC---CHH-HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred cceehhhhhccc---Cch-hHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence 366777766432 222 2332 23447899999987654322 456667778999999999987754 1111 13
Q ss_pred CC----CcceEEeeeEEechh---hHHHHhhcCccccceEeeccCCce----EE----EEeCCCcceEEEecccc-c---
Q 014150 168 FR----NLKSLDLQHITLSQD---VFENLISSSPTLERLTLMNFDGFT----HL----NIDAPNLQFFDIGGVFD-D--- 228 (430)
Q Consensus 168 ~~----~L~~L~L~~~~~~~~---~l~~l~s~cp~Le~L~l~~c~~~~----~l----~i~~p~L~~L~l~~~~~-~--- 228 (430)
++ +|++|+|.++.+++. .+...+..|++|++|+++++.-.. .+ .-..++|++|.+.++.- .
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 44 799999999998764 456677889999999999875211 00 00135799998876421 1
Q ss_pred ----eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHh-ccCCCccEEEEeeeeeehhhcccCCCCCCccccccce
Q 014150 229 ----VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFF-VHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNY 303 (430)
Q Consensus 229 ----~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 303 (430)
..+..+++|++|+++.+...+. ....+...+ ...++|++|+++.+.+........+..+ ..+++|++
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~-------~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~~L~~ 231 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEA-------GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV-ASKASLRE 231 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHH-------HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH-HHCTTCCE
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchH-------HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH-HhCCCccE
Confidence 1234578899998875442110 011122212 2456899999988765431110000000 13568888
Q ss_pred eEEEEeeCChhhHHHH-HHHHhcCCCccEEEEeecCCCCcccccccceecccccccccCceEEEEEeeecC-ccHHHHHH
Q 014150 304 LSIRINFNDLEENLAA-LCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGI-RSELEFIK 381 (430)
Q Consensus 304 L~l~~~~~~~~~~~~l-~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~-~~e~~~~~ 381 (430)
|+++.+......+..+ ..+...+++|++|+++++.-.... ...... .. ..+++|+.+.+.+-.-. .....+..
T Consensus 232 L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~---~~~l~~-~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~ 306 (461)
T 1z7x_W 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKG---CGDLCR-VL-RAKESLKELSLAGNELGDEGARLLCE 306 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH---HHHHHH-HH-HHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred EeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHH---HHHHHH-HH-hhCCCcceEECCCCCCchHHHHHHHH
Confidence 8886543332222223 223346899999999887532100 000000 00 12578888888754321 22224555
Q ss_pred HHHccCCCcceEEEeecC
Q 014150 382 FVLSNSPVLETMTIKPAS 399 (430)
Q Consensus 382 ~il~~~~~L~~l~i~~~~ 399 (430)
.+..+.+.|+++.+..+.
T Consensus 307 ~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 307 TLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHTSTTCCCCEEECTTSC
T ss_pred HhccCCccceeeEcCCCC
Confidence 555566799999998776
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.07 E-value=1.8e-10 Score=108.70 Aligned_cols=243 Identities=14% Similarity=0.065 Sum_probs=122.5
Q ss_pred CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 201 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l 201 (430)
++++.+++..+.. ..++. +..+++|++|++++|.+...+.+..+++|++|+|.++.+.+-.. +..+++|+.|.+
T Consensus 66 ~~L~~L~l~~n~i--~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l 139 (347)
T 4fmz_A 66 TNLEYLNLNGNQI--TDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNL 139 (347)
T ss_dssp TTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEEC
T ss_pred CCccEEEccCCcc--ccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh---hccCCceeEEEC
Confidence 5667766654322 22333 55667777777777766655556677777777777776543211 556777777777
Q ss_pred eccCCceEEE--EeCCCcceEEEecccc-c-eeeccCCCceEEEEEEEeeccccc--cC--------CCCCcchHHHHhc
Q 014150 202 MNFDGFTHLN--IDAPNLQFFDIGGVFD-D-VTFENTFHLALVSIGLYVNVKNDQ--AM--------GPGNSCKLLRFFV 267 (430)
Q Consensus 202 ~~c~~~~~l~--i~~p~L~~L~l~~~~~-~-~~~~~~p~L~~l~i~~~~~~~~~~--~~--------~~~~~~~~~~~l~ 267 (430)
.+|.....+. -..++|+.|.+.++.. . ..+..+++|+.++++.+....... .. .......+. .+.
T Consensus 140 ~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~ 218 (347)
T 4fmz_A 140 GANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT-PVA 218 (347)
T ss_dssp TTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGG
T ss_pred CCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCc-hhh
Confidence 7664332111 1234566666554321 1 113455566666554332211100 00 000000000 045
Q ss_pred cCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccc
Q 014150 268 HLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLT 347 (430)
Q Consensus 268 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~ 347 (430)
.+++|++|.++++.+..... ...+++|+.|+++.+.... + ..+..+|+|+.|++.++.-..
T Consensus 219 ~~~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~l~~n~l~~------ 279 (347)
T 4fmz_A 219 NMTRLNSLKIGNNKITDLSP-------LANLSQLTWLEIGTNQISD-----I-NAVKDLTKLKMLNVGSNQISD------ 279 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCC-----C-GGGTTCTTCCEEECCSSCCCC------
T ss_pred cCCcCCEEEccCCccCCCcc-------hhcCCCCCEEECCCCccCC-----C-hhHhcCCCcCEEEccCCccCC------
Confidence 55666666666554432111 1134566666664332211 1 135566777777776654221
Q ss_pred cceecccccccccCceEEEEEeeecCccHHHHHHHHHccCCCcceEEEeecC
Q 014150 348 NFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPAS 399 (430)
Q Consensus 348 ~~w~~~~~~~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~~~~ 399 (430)
+ + .-..+.+|+.+.+.+..-... ....+.+.++|+.+.++.+.
T Consensus 280 --~-~--~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 280 --I-S--VLNNLSQLNSLFLNNNQLGNE----DMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp --C-G--GGGGCTTCSEEECCSSCCCGG----GHHHHHTCTTCSEEECCSSS
T ss_pred --C-h--hhcCCCCCCEEECcCCcCCCc----ChhHhhccccCCEEEccCCc
Confidence 0 0 112457788888776433221 12335677889888888766
No 9
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.06 E-value=7e-10 Score=104.91 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=64.1
Q ss_pred HhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCccc
Q 014150 265 FFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIG 344 (430)
Q Consensus 265 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~ 344 (430)
++..+++|+.|+++++.+........ ........++.+++.........+..++..+..+++|+.|+++++.-...
T Consensus 217 ~~~~~~~L~~L~L~~n~l~~~~~~~l--~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i-- 292 (353)
T 2z80_A 217 FVDVTSSVECLELRDTDLDTFHFSEL--STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV-- 292 (353)
T ss_dssp HHHHTTTEEEEEEESCBCTTCCCC--------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC--
T ss_pred hhhhcccccEEECCCCcccccccccc--ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCcc--
Confidence 34557788888887776543221111 01113456777777655445555666778889999999999998753310
Q ss_pred ccccceecccccccccCceEEEEEee--ecCccHHHHHHHHHcc
Q 014150 345 VLTNFWEVDHWTSLFSQLRMVKIVGI--SGIRSELEFIKFVLSN 386 (430)
Q Consensus 345 ~~~~~w~~~~~~~~~~~L~~v~i~~~--~~~~~e~~~~~~il~~ 386 (430)
+...-..+++|+.+.+.+- .+....+.+....+++
T Consensus 293 -------~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~ 329 (353)
T 2z80_A 293 -------PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 329 (353)
T ss_dssp -------CTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred -------CHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHh
Confidence 0001124578888888753 4434445555444443
No 10
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.02 E-value=1.4e-11 Score=121.00 Aligned_cols=184 Identities=19% Similarity=0.184 Sum_probs=87.4
Q ss_pred ceeEEEEeeeeecC------CCCCCCCCCcceEEeeeEEechhhHHHHhh----cCccccceEeeccCCceE----E---
Q 014150 148 NLIHLELFNCLLKP------PSTFKGFRNLKSLDLQHITLSQDVFENLIS----SSPTLERLTLMNFDGFTH----L--- 210 (430)
Q Consensus 148 ~L~~L~L~~~~~~~------~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s----~cp~Le~L~l~~c~~~~~----l--- 210 (430)
+|++|+|++|.+.+ +..+..+++|++|+|+++.+++.....+.. ..++|++|.+.+|.-... +
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 57777777666543 233456667777777776665544333322 245577777766531110 0
Q ss_pred EEeCCCcceEEEecccc-c---eee-----ccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeee
Q 014150 211 NIDAPNLQFFDIGGVFD-D---VTF-----ENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYF 281 (430)
Q Consensus 211 ~i~~p~L~~L~l~~~~~-~---~~~-----~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 281 (430)
--..++|++|++.++.- . ..+ ...++|+.|+++.+..... ....+...+..+++|++|+++.+.
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-------~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD-------NCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT-------HHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH-------HHHHHHHHHHhCCCccEEeccCCc
Confidence 00135666666665321 0 001 1244666666654422100 111234445566667777666654
Q ss_pred eehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150 282 LKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 338 (430)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 338 (430)
+...........+...+++|++|+++.+......+..+...+..+++|++|+++++.
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 332111000000000234666666644433333333455556666666666666543
No 11
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.01 E-value=1.3e-10 Score=111.26 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=35.7
Q ss_pred ccccCceeEEEEeeeeecC-----CCC-------CCCCCCcceEEeeeEEechh---hHHHHhhcCccccceEeeccC
Q 014150 143 LFLCQNLIHLELFNCLLKP-----PST-------FKGFRNLKSLDLQHITLSQD---VFENLISSSPTLERLTLMNFD 205 (430)
Q Consensus 143 ~~~~~~L~~L~L~~~~~~~-----~~~-------~~~~~~L~~L~L~~~~~~~~---~l~~l~s~cp~Le~L~l~~c~ 205 (430)
+..+++|++|+|++|.+.. |.+ +..+++|++|+|+++.+.+. .+...+..|++|++|.+.+|.
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 4456667777776653321 111 24566777777777666543 234445666777777776653
No 12
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.98 E-value=2.6e-10 Score=115.61 Aligned_cols=233 Identities=16% Similarity=0.148 Sum_probs=141.5
Q ss_pred CCCcccccCceeEEEEeeeeecCC---CCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc--------CCc
Q 014150 139 VPSSLFLCQNLIHLELFNCLLKPP---STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF--------DGF 207 (430)
Q Consensus 139 lp~~~~~~~~L~~L~L~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c--------~~~ 207 (430)
++..+..+++|++|++++|.+.+. ..+.++++|++|++.++ +.+..+..+...|++|++|.+.+| ..+
T Consensus 281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence 444444678899999988875431 11347899999999888 666777777778999999988543 222
Q ss_pred eE-----EEEeCCCcceEEEeccc-cc---eee-ccCCCceEEEEEEEe-----eccccccCCCCCcchHHHHhccCCCc
Q 014150 208 TH-----LNIDAPNLQFFDIGGVF-DD---VTF-ENTFHLALVSIGLYV-----NVKNDQAMGPGNSCKLLRFFVHLPHI 272 (430)
Q Consensus 208 ~~-----l~i~~p~L~~L~l~~~~-~~---~~~-~~~p~L~~l~i~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~L 272 (430)
.. +.-..|+|+.|.+.+.. .. ..+ ..+|+|+.|++.... .... .+....+..++.++++|
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-----~~~~~~~~~l~~~~~~L 434 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL-----EPLDIGFGAIVEHCKDL 434 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC-----CCTHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC-----CchhhHHHHHHhhCCCc
Confidence 21 11136889998665421 11 112 357899999998322 2110 01134556667889999
Q ss_pred cEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceec
Q 014150 273 RRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEV 352 (430)
Q Consensus 273 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~ 352 (430)
++|++++ .+...... .+...+++|+.|+++.+.... .++..+...||+|++|+|+++.... .. .
T Consensus 435 ~~L~L~~-~l~~~~~~----~l~~~~~~L~~L~L~~~~i~~---~~~~~l~~~~~~L~~L~L~~n~~~~---~~-----~ 498 (594)
T 2p1m_B 435 RRLSLSG-LLTDKVFE----YIGTYAKKMEMLSVAFAGDSD---LGMHHVLSGCDSLRKLEIRDCPFGD---KA-----L 498 (594)
T ss_dssp CEEECCS-SCCHHHHH----HHHHHCTTCCEEEEESCCSSH---HHHHHHHHHCTTCCEEEEESCSCCH---HH-----H
T ss_pred cEEeecC-cccHHHHH----HHHHhchhccEeeccCCCCcH---HHHHHHHhcCCCcCEEECcCCCCcH---HH-----H
Confidence 9999975 22111110 111126689999997654332 2566677889999999999887420 00 0
Q ss_pred ccccccccCceEEEEEeeecCccHHHHHHHHHccCCCcceEEEe
Q 014150 353 DHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIK 396 (430)
Q Consensus 353 ~~~~~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~ 396 (430)
......+++|+.+.+.+..... .-++.+.+..|.|+...+.
T Consensus 499 ~~~~~~l~~L~~L~l~~~~~~~---~~~~~l~~~lp~l~i~~~~ 539 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCSVSF---GACKLLGQKMPKLNVEVID 539 (594)
T ss_dssp HHTGGGGGGSSEEEEESSCCBH---HHHHHHHHHCTTEEEEEEC
T ss_pred HHHHHhCCCCCEEeeeCCCCCH---HHHHHHHHhCCCCEEEEec
Confidence 0011135789999998776532 2344455667777655554
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.94 E-value=2.1e-09 Score=107.86 Aligned_cols=73 Identities=23% Similarity=0.174 Sum_probs=49.0
Q ss_pred HhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150 265 FFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 339 (430)
Q Consensus 265 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 339 (430)
++..+++|+.|+++.+.+...... +..+...+++|++|++............+...+..+++|+.|++..+..
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 191 FADILSSVRYLELRDTNLARFQFS--PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp HHHSTTTBSEEEEESCBCTTCCCC--CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred hHhhcccccEEEccCCcccccccc--ccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 345689999999988766432211 1122234678999999655444444456777788899999999988653
No 14
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.94 E-value=1.5e-10 Score=108.41 Aligned_cols=219 Identities=14% Similarity=0.099 Sum_probs=147.0
Q ss_pred CCCceeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC-CCCCCCCCC
Q 014150 92 HNGPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRN 170 (430)
Q Consensus 92 ~~~~l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~ 170 (430)
....+..+.+....... +...+. .-..++.|++...... .+|..+..+++|++|+|++|.+.. |..+.++++
T Consensus 79 ~~~~l~~L~L~~n~l~~---lp~~l~--~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~ 151 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQ---FPDQAF--RLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNR 151 (328)
T ss_dssp TSTTCCEEEEESSCCSS---CCSCGG--GGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTT
T ss_pred cccceeEEEccCCCchh---cChhhh--hCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcC
Confidence 34568889998864432 222111 2368999999765443 788888899999999999998765 556789999
Q ss_pred cceEEeeeEEechhhHH--------HHhhcCccccceEeeccCCceEEE---EeCCCcceEEEecccc-c--eeeccCCC
Q 014150 171 LKSLDLQHITLSQDVFE--------NLISSSPTLERLTLMNFDGFTHLN---IDAPNLQFFDIGGVFD-D--VTFENTFH 236 (430)
Q Consensus 171 L~~L~L~~~~~~~~~l~--------~l~s~cp~Le~L~l~~c~~~~~l~---i~~p~L~~L~l~~~~~-~--~~~~~~p~ 236 (430)
|+.|+|.+|.+....-. ..+.++++|+.|.+.++.- ..+. -..++|+.|++.++.- . ..+..+++
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~ 230 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK 230 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTT
T ss_pred CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCCcCchhhccCCC
Confidence 99999999864322111 1134599999999998742 2221 1347999999987432 1 13678899
Q ss_pred ceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhH
Q 014150 237 LALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEEN 316 (430)
Q Consensus 237 L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 316 (430)
|+.|+++.+..... +...+.++++|+.|+++++... +..+..+ ..+++|++|+++.+....
T Consensus 231 L~~L~Ls~n~~~~~-----------~p~~~~~l~~L~~L~L~~n~~~----~~~p~~~-~~l~~L~~L~L~~n~~~~--- 291 (328)
T 4fcg_A 231 LEELDLRGCTALRN-----------YPPIFGGRAPLKRLILKDCSNL----LTLPLDI-HRLTQLEKLDLRGCVNLS--- 291 (328)
T ss_dssp CCEEECTTCTTCCB-----------CCCCTTCCCCCCEEECTTCTTC----CBCCTTG-GGCTTCCEEECTTCTTCC---
T ss_pred CCEEECcCCcchhh-----------hHHHhcCCCCCCEEECCCCCch----hhcchhh-hcCCCCCEEeCCCCCchh---
Confidence 99999976543221 1123678899999999976432 1222222 256789999885532221
Q ss_pred HHHHHHHhcCCCccEEEEeecC
Q 014150 317 LAALCLLRSSPNLQELEMLARP 338 (430)
Q Consensus 317 ~~l~~ll~~~p~L~~L~l~~~~ 338 (430)
.++..+..+++|+.+.+....
T Consensus 292 -~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 292 -RLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp -CCCGGGGGSCTTCEEECCGGG
T ss_pred -hccHHHhhccCceEEeCCHHH
Confidence 356678899999999887643
No 15
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.93 E-value=1.1e-08 Score=96.50 Aligned_cols=159 Identities=18% Similarity=0.181 Sum_probs=77.6
Q ss_pred cccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeCCCcceEE
Q 014150 144 FLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFD 221 (430)
Q Consensus 144 ~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~ 221 (430)
..+++|++|++++|.+.. +..+.++++|++|+|+++.+..- ....+..+++|++|.+.++.-. .
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~------------ 138 (353)
T 2z80_A 73 QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFLNLLGNPYK-T------------ 138 (353)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEEECTTCCCS-S------------
T ss_pred ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEEECCCCCCc-c------------
Confidence 344555555555544332 22344455555555555444321 1122344455555555443210 0
Q ss_pred Eeccccc-eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccc
Q 014150 222 IGGVFDD-VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVD 300 (430)
Q Consensus 222 l~~~~~~-~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 300 (430)
... ..+..+++|+.|+++.+...... ....+.++++|++|+++.+.+... .+..+. .+++
T Consensus 139 ----l~~~~~~~~l~~L~~L~l~~n~~~~~~----------~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~-~l~~ 199 (353)
T 2z80_A 139 ----LGETSLFSHLTKLQILRVGNMDTFTKI----------QRKDFAGLTFLEELEIDASDLQSY----EPKSLK-SIQN 199 (353)
T ss_dssp ----SCSSCSCTTCTTCCEEEEEESSSCCEE----------CTTTTTTCCEEEEEEEEETTCCEE----CTTTTT-TCSE
T ss_pred ----cCchhhhccCCCCcEEECCCCcccccc----------CHHHccCCCCCCEEECCCCCcCcc----CHHHHh-cccc
Confidence 111 23456777787777765211100 012246677888888877654321 111111 3567
Q ss_pred cceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150 301 LNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 339 (430)
Q Consensus 301 L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 339 (430)
|++|+++.+... .+ -..++..+++|+.|+++++.-
T Consensus 200 L~~L~l~~n~l~--~~--~~~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 200 VSHLILHMKQHI--LL--LEIFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp EEEEEEECSCST--TH--HHHHHHHTTTEEEEEEESCBC
T ss_pred CCeecCCCCccc--cc--hhhhhhhcccccEEECCCCcc
Confidence 777777554322 11 223456678888888877654
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.90 E-value=3.1e-09 Score=104.43 Aligned_cols=75 Identities=23% Similarity=0.278 Sum_probs=40.7
Q ss_pred CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 201 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l 201 (430)
++++.+.+..+.. ..++. +..+++|++|++++|.+.....+..+++|+.|++.++.+.+-. .+..+++|+.|.+
T Consensus 90 ~~L~~L~l~~n~l--~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l 163 (466)
T 1o6v_A 90 TKLVDILMNNNQI--ADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLSF 163 (466)
T ss_dssp TTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG---GGTTCTTCSEEEE
T ss_pred ccCCEEECCCCcc--ccChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCCh---hhccCCcccEeec
Confidence 4566665543321 12333 4556667777776666555333556677777777766654321 1445555555555
Q ss_pred e
Q 014150 202 M 202 (430)
Q Consensus 202 ~ 202 (430)
.
T Consensus 164 ~ 164 (466)
T 1o6v_A 164 G 164 (466)
T ss_dssp E
T ss_pred C
Confidence 4
No 17
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.90 E-value=9e-10 Score=102.33 Aligned_cols=194 Identities=16% Similarity=0.062 Sum_probs=93.6
Q ss_pred CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeec--CCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccce
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLK--PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL 199 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L 199 (430)
+.++.|++..+..-...+|..+..+++|++|+|++|.+. .|..+.++++|++|+|+++.+.+. +...+..+++|++|
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGI 154 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeE
Confidence 566666665211111245666666677777777776654 244456677777777777666532 23335566777777
Q ss_pred EeeccCCceEEE--E-eC-CCcceEEEecccc----ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCC
Q 014150 200 TLMNFDGFTHLN--I-DA-PNLQFFDIGGVFD----DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPH 271 (430)
Q Consensus 200 ~l~~c~~~~~l~--i-~~-p~L~~L~l~~~~~----~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 271 (430)
.+.++.-...+. + .. ++|+.|.+.++.- ...+..++ |+.|+++.+..... ....+..+++
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~-----------~~~~~~~l~~ 222 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD-----------ASVLFGSDKN 222 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEEC-----------CGGGCCTTSC
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCc-----------CCHHHhcCCC
Confidence 776653211110 0 11 2566666554211 11223333 55555544322110 1122455666
Q ss_pred ccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150 272 IRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 338 (430)
Q Consensus 272 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 338 (430)
|+.|+++.+.+...... + ..+++|++|+++.+.... .++..+..+++|+.|+++++.
T Consensus 223 L~~L~L~~N~l~~~~~~-----~-~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 223 TQKIHLAKNSLAFDLGK-----V-GLSKNLNGLDLRNNRIYG----TLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp CSEEECCSSEECCBGGG-----C-CCCTTCCEEECCSSCCEE----CCCGGGGGCTTCCEEECCSSE
T ss_pred CCEEECCCCceeeecCc-----c-cccCCCCEEECcCCcccC----cCChHHhcCcCCCEEECcCCc
Confidence 66666665544311000 1 123456666663322110 122334556666666666543
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.89 E-value=2e-09 Score=105.71 Aligned_cols=142 Identities=14% Similarity=0.132 Sum_probs=87.1
Q ss_pred hCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceE
Q 014150 121 RSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT 200 (430)
Q Consensus 121 ~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~ 200 (430)
.++++.|++..+.. ..++. +..+++|++|++++|.+.....+.++++|++|+|.++.+.+-. . +..+++|++|.
T Consensus 67 l~~L~~L~Ls~n~l--~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 67 LNNLTQINFSNNQL--TDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID--P-LKNLTNLNRLE 140 (466)
T ss_dssp CTTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEEE
T ss_pred hcCCCEEECCCCcc--CCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCCh--H-HcCCCCCCEEE
Confidence 36788887764432 23444 6677889999998887766444778889999999888765432 1 67888999998
Q ss_pred eeccCCceEEE--EeCCCcceEEEeccccc-eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEE
Q 014150 201 LMNFDGFTHLN--IDAPNLQFFDIGGVFDD-VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEI 277 (430)
Q Consensus 201 l~~c~~~~~l~--i~~p~L~~L~l~~~~~~-~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 277 (430)
+.++.- ..+. -..++|+.|.+.+.... ..+.++++|+.|+++.+..... ..+..+++|++|.+
T Consensus 141 l~~n~l-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~l~~l~~L~~L~l 206 (466)
T 1o6v_A 141 LSSNTI-SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-------------SVLAKLTNLESLIA 206 (466)
T ss_dssp EEEEEE-CCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-------------GGGGGCTTCSEEEC
T ss_pred CCCCcc-CCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-------------hhhccCCCCCEEEe
Confidence 887631 1110 12367777777543221 1255677777777765432110 11455566666666
Q ss_pred eeeee
Q 014150 278 QSYFL 282 (430)
Q Consensus 278 ~~~~~ 282 (430)
+++.+
T Consensus 207 ~~n~l 211 (466)
T 1o6v_A 207 TNNQI 211 (466)
T ss_dssp CSSCC
T ss_pred cCCcc
Confidence 65543
No 19
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.86 E-value=4.4e-10 Score=110.99 Aligned_cols=209 Identities=13% Similarity=0.054 Sum_probs=137.0
Q ss_pred CceEEEEEecCCCcccCC-CcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150 123 CVKEFILEIWKGQRYKVP-SSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 201 (430)
Q Consensus 123 ~l~~l~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l 201 (430)
+++.|++..+.. ..++ ..+..+++|++|+|++|.+.....+..+++|+.|+|+++.+++- ..+++|+.|.+
T Consensus 35 ~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l------~~~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL------LVGPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCC--CCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEE------EECTTCCEEEC
T ss_pred CccEEEeeCCcC--CCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCC------CCCCCcCEEEC
Confidence 688887765432 2343 45667899999999999876533478899999999999987642 13489999999
Q ss_pred eccCCceEEEEeCCCcceEEEeccc----cceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEE
Q 014150 202 MNFDGFTHLNIDAPNLQFFDIGGVF----DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEI 277 (430)
Q Consensus 202 ~~c~~~~~l~i~~p~L~~L~l~~~~----~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 277 (430)
.++.-.....-..++|+.|.+.++. ....+..+++|+.|+++.+.... .....+...+++|++|+|
T Consensus 107 ~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----------~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT----------VNFAELAASSDTLEHLNL 176 (487)
T ss_dssp CSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE----------EEGGGGGGGTTTCCEEEC
T ss_pred cCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC----------cChHHHhhhCCcccEEec
Confidence 9875433223345889999998642 23356678999999887543221 111233457899999999
Q ss_pred eeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceecccccc
Q 014150 278 QSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTS 357 (430)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~ 357 (430)
+++.+..... .. .+++|+.|+++.+.... ++.-+..+++|+.|+++++.-.. . +... .
T Consensus 177 s~N~l~~~~~------~~-~l~~L~~L~Ls~N~l~~-----~~~~~~~l~~L~~L~Ls~N~l~~--------l-p~~l-~ 234 (487)
T 3oja_A 177 QYNFIYDVKG------QV-VFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNKLVL--------I-EKAL-R 234 (487)
T ss_dssp TTSCCCEEEC------CC-CCTTCCEEECCSSCCCE-----ECGGGGGGTTCSEEECTTSCCCE--------E-CTTC-C
T ss_pred CCCccccccc------cc-cCCCCCEEECCCCCCCC-----CCHhHcCCCCccEEEecCCcCcc--------c-chhh-c
Confidence 9887653311 11 36789999995543221 22236788999999999876431 0 0001 1
Q ss_pred cccCceEEEEEeee
Q 014150 358 LFSQLRMVKIVGIS 371 (430)
Q Consensus 358 ~~~~L~~v~i~~~~ 371 (430)
.+++|+.+.+.+-.
T Consensus 235 ~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 235 FSQNLEHFDLRGNG 248 (487)
T ss_dssp CCTTCCEEECTTCC
T ss_pred cCCCCCEEEcCCCC
Confidence 34677787776543
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.85 E-value=1.6e-09 Score=99.19 Aligned_cols=58 Identities=21% Similarity=0.188 Sum_probs=31.6
Q ss_pred CceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccC
Q 014150 147 QNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD 205 (430)
Q Consensus 147 ~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~ 205 (430)
++|++|+++++.+.. +..+..+++|++|+|.++.+..- ....+..+++|++|.+.++.
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCT
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCC
Confidence 456666666665543 23455666666666666654322 12234456666666666554
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.85 E-value=3.5e-10 Score=110.75 Aligned_cols=192 Identities=18% Similarity=0.162 Sum_probs=97.6
Q ss_pred CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccce
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL 199 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L 199 (430)
.+++.|++...... ...|..+..+++|+.|+|++|.+.. +..|.++++|++|+|.++.+..- ....+..+++|++|
T Consensus 75 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEE
Confidence 45666665433221 1123344556777777777766543 34566677777777777765422 12335567777777
Q ss_pred EeeccCCceEEEE----eCCCcceEEEeccc--c---ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCC
Q 014150 200 TLMNFDGFTHLNI----DAPNLQFFDIGGVF--D---DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLP 270 (430)
Q Consensus 200 ~l~~c~~~~~l~i----~~p~L~~L~l~~~~--~---~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (430)
.+.++. +..+.- ..++|+.|++.+.. . ...+..+++|+.|+++.+..... + .+..++
T Consensus 153 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---------~----~~~~l~ 218 (452)
T 3zyi_A 153 WLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM---------P----NLTPLV 218 (452)
T ss_dssp ECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC---------C----CCTTCT
T ss_pred ECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc---------c----cccccc
Confidence 777653 222211 23566666665411 1 11244566666666654322111 0 135566
Q ss_pred CccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150 271 HIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 338 (430)
Q Consensus 271 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 338 (430)
+|+.|+|+++.+...... .+. .+++|+.|+++.+..... ....+..+++|+.|+|+++.
T Consensus 219 ~L~~L~Ls~N~l~~~~~~----~~~-~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 219 GLEELEMSGNHFPEIRPG----SFH-GLSSLKKLWVMNSQVSLI----ERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp TCCEEECTTSCCSEECGG----GGT-TCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSC
T ss_pred cccEEECcCCcCcccCcc----ccc-CccCCCEEEeCCCcCceE----CHHHhcCCCCCCEEECCCCc
Confidence 777777766654322111 011 345666666632211110 11235666777777777654
No 22
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.85 E-value=1.8e-09 Score=71.32 Aligned_cols=39 Identities=23% Similarity=0.271 Sum_probs=33.4
Q ss_pred CCcccCCCcHHHHHHHHcCCCchhhhhhhhhhhhhHhhc
Q 014150 16 ELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKW 54 (430)
Q Consensus 16 ~~d~is~LPdelL~~Ils~L~~~d~~r~s~vskrWr~lw 54 (430)
..+.++.||+|++.+||++|+.+|+++++.|||+|+.+.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 345689999999999999999999999999999999864
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.84 E-value=3.4e-10 Score=110.84 Aligned_cols=112 Identities=10% Similarity=0.088 Sum_probs=60.9
Q ss_pred hccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccc
Q 014150 266 FVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGV 345 (430)
Q Consensus 266 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~ 345 (430)
+..+++|++|+++.+.+.... +..+. .+++|+.|+++.+..... .+..+..+++|+.|+++++.-..
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~----~~~~~-~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~---- 361 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKID----DNAFW-GLTHLLKLNLSQNFLGSI----DSRMFENLDKLEVLDLSYNHIRA---- 361 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEEC----TTTTT-TCTTCCEEECCSSCCCEE----CGGGGTTCTTCCEEECCSSCCCE----
T ss_pred cccCCCCCEEECCCCcccccC----hhHhc-CcccCCEEECCCCccCCc----ChhHhcCcccCCEEECCCCcccc----
Confidence 456667777777666543211 11111 356777777754322211 12346777888888887765321
Q ss_pred cccceecccccccccCceEEEEEeeecCccHHHHHHHHHccCCCcceEEEeecC
Q 014150 346 LTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPAS 399 (430)
Q Consensus 346 ~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~~~~ 399 (430)
...... ..+++|+.+.+.+-.-. .+....+.+.++|+.+.+..++
T Consensus 362 ----~~~~~~-~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 362 ----LGDQSF-LGLPNLKELALDTNQLK----SVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp ----ECTTTT-TTCTTCCEEECCSSCCS----CCCTTTTTTCTTCCEEECCSSC
T ss_pred ----cChhhc-cccccccEEECCCCccc----cCCHhHhccCCcccEEEccCCC
Confidence 000001 13577888887753211 1112245778899999998766
No 24
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.84 E-value=1e-09 Score=102.13 Aligned_cols=244 Identities=13% Similarity=0.051 Sum_probs=154.0
Q ss_pred chHHHHHHHHH--hCCceEEEEEecCCCcccCC-CcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhH
Q 014150 110 SDIDRWILYMS--RSCVKEFILEIWKGQRYKVP-SSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVF 186 (430)
Q Consensus 110 ~~v~~wl~~~~--~~~l~~l~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l 186 (430)
..+...+.... .+++++|++..... ..++ ..+..+++|++|+|++|.+.....+..+++|++|+|+++.+.+-
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l-- 95 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL-- 95 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEE--
T ss_pred cchhhhHHHHhccCCCCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccc--
Confidence 44444444333 24788887754432 2333 34567899999999999876533478899999999999987642
Q ss_pred HHHhhcCccccceEeeccCCceEEEEeCCCcceEEEeccc----cceeeccCCCceEEEEEEEeeccccccCCCCCcchH
Q 014150 187 ENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVF----DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKL 262 (430)
Q Consensus 187 ~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l~~~~----~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~ 262 (430)
..++.|+.|.+.++.-.....-..++|+.|.+.++. ....+..+++|+.|+++.+.... ...
T Consensus 96 ----~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----------~~~ 161 (317)
T 3o53_A 96 ----LVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT----------VNF 161 (317)
T ss_dssp ----EECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE----------EEG
T ss_pred ----cCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc----------ccH
Confidence 245899999999875433223345889999998742 23356678999999987543221 111
Q ss_pred HHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCc
Q 014150 263 LRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETG 342 (430)
Q Consensus 263 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~ 342 (430)
..+...+++|++|+++.+.+..+.. .. .+++|+.|+++.+.... ++.-+..+++|+.|+++++.-..
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~~~------~~-~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~L~~N~l~~- 228 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDVKG------QV-VFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNKLVL- 228 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEEC------CC-CCTTCCEEECCSSCCCE-----ECGGGGGGTTCSEEECTTSCCCE-
T ss_pred HHHhhccCcCCEEECCCCcCccccc------cc-ccccCCEEECCCCcCCc-----chhhhcccCcccEEECcCCcccc-
Confidence 2334578999999999887654311 11 36789999995543221 22236778999999999875431
Q ss_pred ccccccceecccccccccCceEEEEEeeecCccHHHHHHHHHccCCCcceEEEe
Q 014150 343 IGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIK 396 (430)
Q Consensus 343 ~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~ 396 (430)
. +... ..+++|+.+.+.+-...+. .....+.+.+.|+.+.+.
T Consensus 229 -------l-~~~~-~~l~~L~~L~l~~N~~~~~---~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 229 -------I-EKAL-RFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp -------E-CTTC-CCCTTCCEEECTTCCCBHH---HHHHHHHTCHHHHHHHHH
T ss_pred -------h-hhHh-hcCCCCCEEEccCCCccCc---CHHHHHhccccceEEECC
Confidence 0 0001 1356788888775443211 233445566667766655
No 25
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.84 E-value=1e-09 Score=102.78 Aligned_cols=169 Identities=18% Similarity=0.111 Sum_probs=85.2
Q ss_pred CceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEE-eCCCcceEEEe
Q 014150 147 QNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI-DAPNLQFFDIG 223 (430)
Q Consensus 147 ~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i-~~p~L~~L~l~ 223 (430)
++|+.|+|+++.+.. +..+.++++|++|+|.++.+..- ....+..+++|++|.+.++.- ..+.. ..++|+.|.+.
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQL-KELPEKMPKTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCC-SBCCSSCCTTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee-CHHHhcCCCCCCEEECCCCcC-CccChhhcccccEEECC
Confidence 567777777776654 22466677777777777665432 123345677777777766531 11110 12567777766
Q ss_pred ccc-c---ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCcccc
Q 014150 224 GVF-D---DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCV 299 (430)
Q Consensus 224 ~~~-~---~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 299 (430)
++. . ...+..+++|+.++++.+.... .......+.++++|++|.++.+.+..+.. . .++
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-----~---~~~ 192 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKS---------SGIENGAFQGMKKLSYIRIADTNITTIPQ-----G---LPP 192 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCG---------GGBCTTGGGGCTTCCEEECCSSCCCSCCS-----S---CCT
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCc---------cCcChhhccCCCCcCEEECCCCccccCCc-----c---ccc
Confidence 532 1 1124566777777765433210 00111234566777777776655432111 1 124
Q ss_pred ccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150 300 DLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 338 (430)
Q Consensus 300 ~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 338 (430)
+|++|+++.+..... .+..+..+++|+.|+++++.
T Consensus 193 ~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~ 227 (330)
T 1xku_A 193 SLTELHLDGNKITKV----DAASLKGLNNLAKLGLSFNS 227 (330)
T ss_dssp TCSEEECTTSCCCEE----CTGGGTTCTTCCEEECCSSC
T ss_pred cCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCc
Confidence 566666532211110 11234556666666665543
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.83 E-value=3.6e-08 Score=98.84 Aligned_cols=144 Identities=14% Similarity=0.064 Sum_probs=78.2
Q ss_pred eeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEe
Q 014150 230 TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRIN 309 (430)
Q Consensus 230 ~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 309 (430)
.+.++++|+.|+++.+...... ....+.++++|++|+++.+.+... .+..+. .+++|++|++...
T Consensus 118 ~~~~l~~L~~L~L~~n~~~~~~----------~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~-~l~~L~~L~l~~n 182 (549)
T 2z81_A 118 LFPNLTNLQTLRIGNVETFSEI----------RRIDFAGLTSLNELEIKALSLRNY----QSQSLK-SIRDIHHLTLHLS 182 (549)
T ss_dssp SCTTCTTCCEEEEEESSSCCEE----------CTTTTTTCCEEEEEEEEETTCCEE----CTTTTT-TCSEEEEEEEECS
T ss_pred hhhccCCccEEECCCCcccccc----------CHhhhhcccccCeeeccCCccccc----Chhhhh-ccccCceEecccC
Confidence 3567888888888765421110 012257788999999987765421 111222 4567888887654
Q ss_pred eCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceecccccccccCceEEEEEeeecCccHHHHHHHHHccCCC
Q 014150 310 FNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPV 389 (430)
Q Consensus 310 ~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~ 389 (430)
.... + -..++..+++|+.|+++++.-.+.... .........+|+.+.+.+..-......-+...+.+.+.
T Consensus 183 ~~~~--~--~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~ 252 (549)
T 2z81_A 183 ESAF--L--LEIFADILSSVRYLELRDTNLARFQFS------PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252 (549)
T ss_dssp BSTT--H--HHHHHHSTTTBSEEEEESCBCTTCCCC------CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTT
T ss_pred cccc--c--chhhHhhcccccEEEccCCcccccccc------ccchhhhhhcccceeccccccchhHHHHHHHHhhhhcc
Confidence 3321 1 223456789999999988754311000 00011135677777776543322222223334456666
Q ss_pred cceEEEeec
Q 014150 390 LETMTIKPA 398 (430)
Q Consensus 390 L~~l~i~~~ 398 (430)
|+.+.+..+
T Consensus 253 L~~l~l~~~ 261 (549)
T 2z81_A 253 LSEVEFDDC 261 (549)
T ss_dssp CCEEEEESC
T ss_pred ccccccccc
Confidence 666666543
No 27
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.83 E-value=6.1e-10 Score=108.66 Aligned_cols=191 Identities=16% Similarity=0.149 Sum_probs=95.0
Q ss_pred CCceEEEEEecCCCcccCC-CcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150 122 SCVKEFILEIWKGQRYKVP-SSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 198 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~ 198 (430)
.+++.|++..... ..++ ..+..+++|+.|+|++|.+.. +..|.++++|++|+|.++.+..- ....+..+++|++
T Consensus 64 ~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCCC--CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCE
T ss_pred CCCcEEEccCCcC--CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCce
Confidence 4555555543322 1222 334456667777777665543 23455667777777766665422 1223455667777
Q ss_pred eEeeccCCceEEEE----eCCCcceEEEeccc-----cceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccC
Q 014150 199 LTLMNFDGFTHLNI----DAPNLQFFDIGGVF-----DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHL 269 (430)
Q Consensus 199 L~l~~c~~~~~l~i----~~p~L~~L~l~~~~-----~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (430)
|.+.++. +..+.- ..++|+.|++.+.. ....+.++++|+.|+++.+..... + .+..+
T Consensus 141 L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---------~----~~~~l 206 (440)
T 3zyj_A 141 LWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI---------P----NLTPL 206 (440)
T ss_dssp EECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC---------C----CCTTC
T ss_pred eeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc---------c----ccCCC
Confidence 7776543 222111 13566666665421 111244566666666654322111 1 14556
Q ss_pred CCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150 270 PHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 338 (430)
Q Consensus 270 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 338 (430)
++|+.|+|+++.+..+.. ..+. .+++|+.|++..+..... ....+..+++|+.|+|+++.
T Consensus 207 ~~L~~L~Ls~N~l~~~~~----~~~~-~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 207 IKLDELDLSGNHLSAIRP----GSFQ-GLMHLQKLWMIQSQIQVI----ERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp SSCCEEECTTSCCCEECT----TTTT-TCTTCCEEECTTCCCCEE----CTTSSTTCTTCCEEECTTSC
T ss_pred cccCEEECCCCccCccCh----hhhc-cCccCCEEECCCCceeEE----ChhhhcCCCCCCEEECCCCC
Confidence 677777776665432211 1111 355667666632211110 11235567777777777654
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.83 E-value=2.2e-10 Score=116.44 Aligned_cols=59 Identities=25% Similarity=0.281 Sum_probs=28.1
Q ss_pred ccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150 145 LCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 204 (430)
Q Consensus 145 ~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c 204 (430)
.+++|+.|++++|.+.. |..+..+++|++|++.++.+... ....+..+++|+.|.+.++
T Consensus 276 ~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGN 335 (606)
T ss_dssp TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSC
T ss_pred cccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEECCCC
Confidence 44555555555554443 33444555555555555554322 1122344455555555444
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.83 E-value=1e-09 Score=108.17 Aligned_cols=223 Identities=17% Similarity=0.116 Sum_probs=106.5
Q ss_pred cccccCceeEEEEeeeeecC-C-CCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEE----eCC
Q 014150 142 SLFLCQNLIHLELFNCLLKP-P-STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI----DAP 215 (430)
Q Consensus 142 ~~~~~~~L~~L~L~~~~~~~-~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i----~~p 215 (430)
.+..+++|++|+|++|.+.. + ..|.++++|++|+|+++.+... ....+..+++|++|.+.++.- ..+.. ..+
T Consensus 75 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~ 152 (477)
T 2id5_A 75 AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSLEVGDNDL-VYISHRAFSGLN 152 (477)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEEECCTTC-CEECTTSSTTCT
T ss_pred hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC-ChhHccccccCCEEECCCCcc-ceeChhhccCCC
Confidence 34445555555555554443 1 2244555555555555544321 122234555555555554321 11110 124
Q ss_pred CcceEEEeccc-cc---eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCC
Q 014150 216 NLQFFDIGGVF-DD---VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVP 291 (430)
Q Consensus 216 ~L~~L~l~~~~-~~---~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 291 (430)
+|+.|.+.++. .. ..+..+++|+.|++..+...... ...+..+++|+.|+++.+.... ..+
T Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~-----------~~~~~~l~~L~~L~l~~~~~~~----~~~ 217 (477)
T 2id5_A 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR-----------DYSFKRLYRLKVLEISHWPYLD----TMT 217 (477)
T ss_dssp TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC-----------TTCSCSCTTCCEEEEECCTTCC----EEC
T ss_pred CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC-----------hhhcccCcccceeeCCCCcccc----ccC
Confidence 55555555421 11 12345555565555543221110 0123455666666665532210 001
Q ss_pred CCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceecccccccccCceEEEEEeee
Q 014150 292 SRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGIS 371 (430)
Q Consensus 292 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~ 371 (430)
.... ...+|+.|+++.+..... -...+..+++|+.|+|+++.-... ... .-..+.+|+.+.+.+-.
T Consensus 218 ~~~~-~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~--------~~~-~~~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 218 PNCL-YGLNLTSLSITHCNLTAV----PYLAVRHLVYLRFLNLSYNPISTI--------EGS-MLHELLRLQEIQLVGGQ 283 (477)
T ss_dssp TTTT-TTCCCSEEEEESSCCCSC----CHHHHTTCTTCCEEECCSSCCCEE--------CTT-SCTTCTTCCEEECCSSC
T ss_pred cccc-cCccccEEECcCCccccc----CHHHhcCccccCeeECCCCcCCcc--------Chh-hccccccCCEEECCCCc
Confidence 0111 123677777754432211 113568889999999988753310 000 11145778888877532
Q ss_pred cCccHHHHHHHHHccCCCcceEEEeecC
Q 014150 372 GIRSELEFIKFVLSNSPVLETMTIKPAS 399 (430)
Q Consensus 372 ~~~~e~~~~~~il~~~~~L~~l~i~~~~ 399 (430)
-.. +....+.+.++|+.+.+..+.
T Consensus 284 l~~----~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 284 LAV----VEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp CSE----ECTTTBTTCTTCCEEECCSSC
T ss_pred cce----ECHHHhcCcccCCEEECCCCc
Confidence 111 111235678999999998765
No 30
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.83 E-value=1.3e-09 Score=106.60 Aligned_cols=195 Identities=16% Similarity=0.125 Sum_probs=126.2
Q ss_pred CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccce
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL 199 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L 199 (430)
.+++.|++....... ..+..+..+++|++|+|++|.+.. +..|..+++|+.|+|+++.+..- ....+..+++|+.|
T Consensus 99 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRL 176 (452)
T ss_dssp TTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccCC-cChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCccee-CHhHHhcCCcccEE
Confidence 678888886543221 123445678999999999998765 34477899999999999987532 13346789999999
Q ss_pred EeeccCCceEEEE----eCCCcceEEEeccc-cc-eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCcc
Q 014150 200 TLMNFDGFTHLNI----DAPNLQFFDIGGVF-DD-VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIR 273 (430)
Q Consensus 200 ~l~~c~~~~~l~i----~~p~L~~L~l~~~~-~~-~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 273 (430)
.+.+|..+..+.. ..++|+.|++.++. .. -.+..+++|+.|+++.+..... ....+.++++|+
T Consensus 177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~l~~L~ 245 (452)
T 3zyi_A 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI-----------RPGSFHGLSSLK 245 (452)
T ss_dssp ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEE-----------CGGGGTTCTTCC
T ss_pred eCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCccc-----------CcccccCccCCC
Confidence 9998877665532 24788888887642 11 1356778888888865432211 123357788888
Q ss_pred EEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150 274 RLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 338 (430)
Q Consensus 274 ~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 338 (430)
.|.++++.+...... .+. .+++|+.|+++.+..... ....+..+++|+.|+|.+++
T Consensus 246 ~L~L~~n~l~~~~~~----~~~-~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 246 KLWVMNSQVSLIERN----AFD-GLASLVELNLAHNNLSSL----PHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EEECTTSCCCEECTT----TTT-TCTTCCEEECCSSCCSCC----CTTSSTTCTTCCEEECCSSC
T ss_pred EEEeCCCcCceECHH----Hhc-CCCCCCEEECCCCcCCcc----ChHHhccccCCCEEEccCCC
Confidence 888887765432111 111 456788887744322111 11345677888888887765
No 31
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.81 E-value=1.2e-09 Score=100.05 Aligned_cols=194 Identities=21% Similarity=0.150 Sum_probs=109.6
Q ss_pred hCCceEEEEEecCCCcccCC-CcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEE-echhhHHHHhhcCccc
Q 014150 121 RSCVKEFILEIWKGQRYKVP-SSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTL 196 (430)
Q Consensus 121 ~~~l~~l~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~s~cp~L 196 (430)
.++++++++..... ..++ ..+..+++|++|+++++.+.. +..+.++++|++|+|.++. +..- ....+..+++|
T Consensus 31 ~~~l~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L 107 (285)
T 1ozn_A 31 PAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRL 107 (285)
T ss_dssp CTTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTC
T ss_pred CCCceEEEeeCCcC--CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCC
Confidence 35777777754322 2334 345667899999999887654 4567789999999999886 4432 13346678899
Q ss_pred cceEeeccCCceEEE---E-eCCCcceEEEeccc-cc---eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhcc
Q 014150 197 ERLTLMNFDGFTHLN---I-DAPNLQFFDIGGVF-DD---VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVH 268 (430)
Q Consensus 197 e~L~l~~c~~~~~l~---i-~~p~L~~L~l~~~~-~~---~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (430)
++|.+.++.-. .+. + ..++|+.|.+.++. .. ..+..+++|+.|+++.+...... ...+..
T Consensus 108 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------~~~~~~ 175 (285)
T 1ozn_A 108 HTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-----------ERAFRG 175 (285)
T ss_dssp CEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-----------TTTTTT
T ss_pred CEEECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-----------HHHhcC
Confidence 99999876422 111 1 13566666666532 11 12455667777766543221100 112455
Q ss_pred CCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150 269 LPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 338 (430)
Q Consensus 269 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 338 (430)
+++|++|+++++.+.... +..+. .+++|+.|+++.+..... ....+..+++|+.|++.+++
T Consensus 176 l~~L~~L~l~~n~l~~~~----~~~~~-~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 176 LHSLDRLLLHQNRVAHVH----PHAFR-DLGRLMTLYLFANNLSAL----PTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CTTCCEEECCSSCCCEEC----TTTTT-TCTTCCEEECCSSCCSCC----CHHHHTTCTTCCEEECCSSC
T ss_pred ccccCEEECCCCcccccC----HhHcc-CcccccEeeCCCCcCCcC----CHHHcccCcccCEEeccCCC
Confidence 677777777666543211 11111 345667666643322111 12345667777777776654
No 32
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.81 E-value=1.6e-10 Score=110.76 Aligned_cols=211 Identities=14% Similarity=0.118 Sum_probs=112.4
Q ss_pred CCceEEEEEecCCCcc--cCCCcc-------cccCceeEEEEeeeeecCC------CCCCCCCCcceEEeeeEEechh--
Q 014150 122 SCVKEFILEIWKGQRY--KVPSSL-------FLCQNLIHLELFNCLLKPP------STFKGFRNLKSLDLQHITLSQD-- 184 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~--~lp~~~-------~~~~~L~~L~L~~~~~~~~------~~~~~~~~L~~L~L~~~~~~~~-- 184 (430)
++++.|.+..+....+ .+|..+ ..+++|++|+|++|.+... ..+..+++|++|+|.+|.+++.
T Consensus 60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 139 (386)
T 2ca6_A 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG 139 (386)
T ss_dssp TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH
Confidence 5777777754322111 233332 5678899999988877652 1345688899999988887643
Q ss_pred -hHHHHhhcC---------ccccceEeeccCCc-eEEE------EeCCCcceEEEeccccc------e---eeccCCCce
Q 014150 185 -VFENLISSS---------PTLERLTLMNFDGF-THLN------IDAPNLQFFDIGGVFDD------V---TFENTFHLA 238 (430)
Q Consensus 185 -~l~~l~s~c---------p~Le~L~l~~c~~~-~~l~------i~~p~L~~L~l~~~~~~------~---~~~~~p~L~ 238 (430)
.+...+..+ ++|++|.+.+|.-. ..+. -..++|+.|.+.++.-. + .+..+++|+
T Consensus 140 ~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~ 219 (386)
T 2ca6_A 140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK 219 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC
T ss_pred HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCcc
Confidence 234444445 88888888876421 0000 12456666666553211 0 334566777
Q ss_pred EEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCC-ccccccceeEEEEeeCChhhHH
Q 014150 239 LVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLP-RPCVDLNYLSIRINFNDLEENL 317 (430)
Q Consensus 239 ~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~ 317 (430)
.|+++.+...+. ....+...+..+++|++|.|+++.+........+..+. ..+++|++|+++.+......+.
T Consensus 220 ~L~Ls~n~l~~~-------g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~ 292 (386)
T 2ca6_A 220 VLDLQDNTFTHL-------GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 292 (386)
T ss_dssp EEECCSSCCHHH-------HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred EEECcCCCCCcH-------HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence 776654332100 01223445566677777777666543221100000000 0145677777654443333333
Q ss_pred HHHHHH-hcCCCccEEEEeecCC
Q 014150 318 AALCLL-RSSPNLQELEMLARPE 339 (430)
Q Consensus 318 ~l~~ll-~~~p~L~~L~l~~~~~ 339 (430)
.++..+ .++|+|+.|++.++..
T Consensus 293 ~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 293 TLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHHHHHhcCCCceEEEccCCcC
Confidence 444444 5567777777766543
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.80 E-value=2.2e-09 Score=105.10 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=63.1
Q ss_pred HhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCccc
Q 014150 265 FFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIG 344 (430)
Q Consensus 265 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~ 344 (430)
.+.++++|++|+++.+.+...... .+ ..+++|+.|+++.+..... .+..+..+|+|+.|++.++.-...
T Consensus 318 ~~~~l~~L~~L~Ls~N~l~~~~~~----~~-~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~-- 386 (455)
T 3v47_A 318 AFWGLTHLLKLNLSQNFLGSIDSR----MF-ENLDKLEVLDLSYNHIRAL----GDQSFLGLPNLKELALDTNQLKSV-- 386 (455)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGG----GG-TTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCSCC--
T ss_pred HhcCcccCCEEECCCCccCCcChh----Hh-cCcccCCEEECCCCccccc----ChhhccccccccEEECCCCccccC--
Confidence 367889999999998876432111 11 1467899999965432211 133467899999999999764310
Q ss_pred ccccceecccccccccCceEEEEEe--eecCccHHHHHHHHHc
Q 014150 345 VLTNFWEVDHWTSLFSQLRMVKIVG--ISGIRSELEFIKFVLS 385 (430)
Q Consensus 345 ~~~~~w~~~~~~~~~~~L~~v~i~~--~~~~~~e~~~~~~il~ 385 (430)
... .-..+++|+.+.+.+ +.+......+....+.
T Consensus 387 ------~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~ 422 (455)
T 3v47_A 387 ------PDG-IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 422 (455)
T ss_dssp ------CTT-TTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred ------CHh-HhccCCcccEEEccCCCcccCCCcchHHHHHHH
Confidence 000 112467899999886 4454554555544443
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.79 E-value=5.6e-09 Score=98.31 Aligned_cols=251 Identities=13% Similarity=0.096 Sum_probs=155.8
Q ss_pred CceeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCcccCCCcccccCceeEEEEeeee-ecCCCCCCCCCCcc
Q 014150 94 GPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCL-LKPPSTFKGFRNLK 172 (430)
Q Consensus 94 ~~l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~L~ 172 (430)
..++.+.+.......... ....++++++++..+.. ..++. +..+++|+.|++++|. ......+..+++|+
T Consensus 88 ~~L~~L~L~~n~i~~~~~------~~~l~~L~~L~l~~n~i--~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~ 158 (347)
T 4fmz_A 88 VKLTNLYIGTNKITDISA------LQNLTNLRELYLNEDNI--SDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLN 158 (347)
T ss_dssp TTCCEEECCSSCCCCCGG------GTTCTTCSEEECTTSCC--CCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCC
T ss_pred CcCCEEEccCCcccCchH------HcCCCcCCEEECcCCcc--cCchh-hccCCceeEEECCCCCCcccccchhhCCCCc
Confidence 346777777654333221 12236788888854432 23443 6678999999999984 44445577899999
Q ss_pred eEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE--EeCCCcceEEEecccc-ce-eeccCCCceEEEEEEEeec
Q 014150 173 SLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN--IDAPNLQFFDIGGVFD-DV-TFENTFHLALVSIGLYVNV 248 (430)
Q Consensus 173 ~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~--i~~p~L~~L~l~~~~~-~~-~~~~~p~L~~l~i~~~~~~ 248 (430)
.|++.++.+.+... +..++.|++|.+.+|.-. .+. -..++|+.|.+.++.. .. .+..+++|+.|+++.+...
T Consensus 159 ~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 159 YLTVTESKVKDVTP---IANLTDLYSLSLNYNQIE-DISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKIT 234 (347)
T ss_dssp EEECCSSCCCCCGG---GGGCTTCSEEECTTSCCC-CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred EEEecCCCcCCchh---hccCCCCCEEEccCCccc-ccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccC
Confidence 99999988754322 678999999999987421 111 1347888888876421 11 2567888999988765432
Q ss_pred cccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCC
Q 014150 249 KNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPN 328 (430)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~ 328 (430)
.. .. +..+++|++|+++.+.+..+. . + ..+++|++|+++.+.... + ..+..+|+
T Consensus 235 ~~---------~~----~~~l~~L~~L~l~~n~l~~~~---~---~-~~l~~L~~L~l~~n~l~~-----~-~~~~~l~~ 288 (347)
T 4fmz_A 235 DL---------SP----LANLSQLTWLEIGTNQISDIN---A---V-KDLTKLKMLNVGSNQISD-----I-SVLNNLSQ 288 (347)
T ss_dssp CC---------GG----GTTCTTCCEEECCSSCCCCCG---G---G-TTCTTCCEEECCSSCCCC-----C-GGGGGCTT
T ss_pred CC---------cc----hhcCCCCCEEECCCCccCCCh---h---H-hcCCCcCEEEccCCccCC-----C-hhhcCCCC
Confidence 11 11 578889999999887654321 1 1 146688888885443221 1 24678888
Q ss_pred ccEEEEeecCCCCcccccccceecccccccccCceEEEEEeeecCccHHHHHHHHHccCCCcceEEEeec
Q 014150 329 LQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPA 398 (430)
Q Consensus 329 L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~~~ 398 (430)
|+.|++.++.-... . .. .-..+++|+.+.+.+-.-.... . +.+.+.|+++.+..+
T Consensus 289 L~~L~L~~n~l~~~---~-----~~-~l~~l~~L~~L~L~~n~l~~~~----~--~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 289 LNSLFLNNNQLGNE---D-----ME-VIGGLTNLTTLFLSQNHITDIR----P--LASLSKMDSADFANQ 343 (347)
T ss_dssp CSEEECCSSCCCGG---G-----HH-HHHTCTTCSEEECCSSSCCCCG----G--GGGCTTCSEESSSCC
T ss_pred CCEEECcCCcCCCc---C-----hh-HhhccccCCEEEccCCcccccc----C--hhhhhccceeehhhh
Confidence 99998888753210 0 00 0113577888887764322111 1 567788888877654
No 35
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.79 E-value=1.6e-09 Score=105.72 Aligned_cols=194 Identities=16% Similarity=0.154 Sum_probs=124.1
Q ss_pred CCceEEEEEecCCCcccCC-CcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150 122 SCVKEFILEIWKGQRYKVP-SSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 198 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~ 198 (430)
++++.|++..... ..++ ..+..+++|++|+|++|.+.. +..+..+++|+.|+|.++.+..- ....+..+++|+.
T Consensus 88 ~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~ 164 (440)
T 3zyj_A 88 RHLEILQLSRNHI--RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRR 164 (440)
T ss_dssp SSCCEEECCSSCC--CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCE
T ss_pred CCCCEEECCCCcC--CccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccccc-CHHHhhhCcccCE
Confidence 5778887764432 2233 345567899999999998765 23577899999999999886532 1234667899999
Q ss_pred eEeeccCCceEEEE----eCCCcceEEEeccc-cce-eeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCc
Q 014150 199 LTLMNFDGFTHLNI----DAPNLQFFDIGGVF-DDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHI 272 (430)
Q Consensus 199 L~l~~c~~~~~l~i----~~p~L~~L~l~~~~-~~~-~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 272 (430)
|.+.++..+..+.- ..++|+.|++.++. ..+ .+..+++|+.|+++.+..... ....+.++++|
T Consensus 165 L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~l~~L 233 (440)
T 3zyj_A 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI-----------RPGSFQGLMHL 233 (440)
T ss_dssp EECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE-----------CTTTTTTCTTC
T ss_pred eCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCcc-----------ChhhhccCccC
Confidence 99998776654432 24788888887642 111 356778888888865432211 01235678888
Q ss_pred cEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150 273 RRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 338 (430)
Q Consensus 273 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 338 (430)
++|.++++.+..+... .+ ..+++|+.|+++.+..... -...+..+++|+.|+|.+++
T Consensus 234 ~~L~L~~n~l~~~~~~----~~-~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 234 QKLWMIQSQIQVIERN----AF-DNLQSLVEINLAHNNLTLL----PHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CEEECTTCCCCEECTT----SS-TTCTTCCEEECTTSCCCCC----CTTTTSSCTTCCEEECCSSC
T ss_pred CEEECCCCceeEEChh----hh-cCCCCCCEEECCCCCCCcc----ChhHhccccCCCEEEcCCCC
Confidence 8888887765432211 11 1456788888743322111 12345677888888887765
No 36
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.78 E-value=1e-09 Score=114.63 Aligned_cols=194 Identities=19% Similarity=0.123 Sum_probs=113.5
Q ss_pred CCceEEEEEecCCCcccCCC--cccccCceeEEEEeeeeecC--CCCC-CCCCCcceEEeeeEEechhhHH--HHhhcCc
Q 014150 122 SCVKEFILEIWKGQRYKVPS--SLFLCQNLIHLELFNCLLKP--PSTF-KGFRNLKSLDLQHITLSQDVFE--NLISSSP 194 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~--~~~~-~~~~~L~~L~L~~~~~~~~~l~--~l~s~cp 194 (430)
+.++.|++..+.. ...+|. .+..+++|++|+|++|.+.. +..+ .++++|++|+|+++.+.+.... ..+..|+
T Consensus 100 ~~L~~L~Ls~n~l-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~ 178 (768)
T 3rgz_A 100 ASLTSLDLSRNSL-SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178 (768)
T ss_dssp TTCCEEECCSSEE-EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred CCCCEEECCCCcC-CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence 4667766643221 113555 67778888888888887754 2222 5788899999988887654322 2367889
Q ss_pred cccceEeeccCCceEEE-EeCCCcceEEEecccc---ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCC
Q 014150 195 TLERLTLMNFDGFTHLN-IDAPNLQFFDIGGVFD---DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLP 270 (430)
Q Consensus 195 ~Le~L~l~~c~~~~~l~-i~~p~L~~L~l~~~~~---~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (430)
+|++|.+.++.-..... -..++|+.|++.++.- ...+.++++|++|+++.+... ..+...+..++
T Consensus 179 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~-----------~~~~~~l~~l~ 247 (768)
T 3rgz_A 179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS-----------GDFSRAISTCT 247 (768)
T ss_dssp TCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCC-----------SCHHHHTTTCS
T ss_pred CCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCC-----------CcccHHHhcCC
Confidence 99999988764211111 2357888888876421 112667888888888654321 22344567888
Q ss_pred CccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHH-HHhcCCCccEEEEeecC
Q 014150 271 HIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALC-LLRSSPNLQELEMLARP 338 (430)
Q Consensus 271 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-ll~~~p~L~~L~l~~~~ 338 (430)
+|++|+++.+.+.. ..+. . .+++|++|++..+.... .++. +...|++|+.|++.++.
T Consensus 248 ~L~~L~Ls~n~l~~----~~~~-~--~l~~L~~L~L~~n~l~~----~ip~~~~~~~~~L~~L~Ls~n~ 305 (768)
T 3rgz_A 248 ELKLLNISSNQFVG----PIPP-L--PLKSLQYLSLAENKFTG----EIPDFLSGACDTLTGLDLSGNH 305 (768)
T ss_dssp SCCEEECCSSCCEE----SCCC-C--CCTTCCEEECCSSEEEE----SCCCCSCTTCTTCSEEECCSSE
T ss_pred CCCEEECCCCcccC----ccCc-c--ccCCCCEEECcCCccCC----ccCHHHHhhcCcCCEEECcCCc
Confidence 88888888775431 1110 0 35566666663221110 0111 12334666666666543
No 37
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.78 E-value=2.2e-09 Score=109.09 Aligned_cols=244 Identities=14% Similarity=0.070 Sum_probs=124.7
Q ss_pred CceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceE
Q 014150 123 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT 200 (430)
Q Consensus 123 ~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~ 200 (430)
+++++++.... ...+|..+..+++|++|++++|.+.. +..+..+++|+.|++.++.+........+..+++|++|.
T Consensus 279 ~L~~L~l~~n~--l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 279 GLQELDLTATH--LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp TCSEEECTTSC--CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred CCCEEeccCCc--cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 44444443222 12566666666777777777776543 335566777777777776544322223355677777777
Q ss_pred eeccCCceEEEE------eCCCcceEEEeccc-c---ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCC
Q 014150 201 LMNFDGFTHLNI------DAPNLQFFDIGGVF-D---DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLP 270 (430)
Q Consensus 201 l~~c~~~~~l~i------~~p~L~~L~l~~~~-~---~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (430)
+.++.-. .+.. ..++|+.|.+.++. . ...+..+++|+.|+++.+...... ....+..++
T Consensus 357 l~~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------~~~~~~~l~ 425 (606)
T 3t6q_A 357 LSHDDIE-TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD----------AQSPFQNLH 425 (606)
T ss_dssp CCSSCCC-EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT----------TCCTTTTCT
T ss_pred CCCCccc-cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc----------cchhhhCcc
Confidence 7765432 2221 23667777776532 1 123455677777776543322110 011245667
Q ss_pred CccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccce
Q 014150 271 HIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFW 350 (430)
Q Consensus 271 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w 350 (430)
+|++|+++++.+.... +..+ ..+++|++|+++.+......+ .....+..+++|+.|+++++.-...
T Consensus 426 ~L~~L~l~~n~l~~~~----~~~~-~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~-------- 491 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISS----EQLF-DGLPALQHLNLQGNHFPKGNI-QKTNSLQTLGRLEILVLSFCDLSSI-------- 491 (606)
T ss_dssp TCCEEECTTCCCBTTC----TTTT-TTCTTCCEEECTTCBCGGGEE-CSSCGGGGCTTCCEEECTTSCCCEE--------
T ss_pred cCCEEECCCCccCCcC----HHHH-hCCCCCCEEECCCCCCCcccc-ccchhhccCCCccEEECCCCccCcc--------
Confidence 7777777766543211 1111 135677777774332111000 0112356677788877777643210
Q ss_pred ecccccccccCceEEEEEeeecCccHHHHHHHHHccCCCcceEEEeecC
Q 014150 351 EVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPAS 399 (430)
Q Consensus 351 ~~~~~~~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~~~~ 399 (430)
..... ..+++|+.+.+.+-.-.. .....+.+.+.| .+.+..+.
T Consensus 492 ~~~~~-~~l~~L~~L~Ls~N~l~~----~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 492 DQHAF-TSLKMMNHVDLSHNRLTS----SSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp CTTTT-TTCTTCCEEECCSSCCCG----GGGGGGTTCCSC-EEECCSSC
T ss_pred Chhhh-ccccCCCEEECCCCccCc----CChhHhCccccc-EEECcCCc
Confidence 00001 135677777776532211 112234566777 66666554
No 38
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.76 E-value=1.1e-09 Score=114.56 Aligned_cols=66 Identities=24% Similarity=0.243 Sum_probs=33.9
Q ss_pred CCCcccc-cCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150 139 VPSSLFL-CQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 204 (430)
Q Consensus 139 lp~~~~~-~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c 204 (430)
+|..+.. +++|++|+|++|.+.. |..+.++++|++|+|.++.+.+..-...+..+++|++|.+.++
T Consensus 285 ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp CCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred cCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 3444333 3556666666555432 3344556666666666665543222223455666666666654
No 39
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.75 E-value=4.8e-09 Score=95.17 Aligned_cols=64 Identities=20% Similarity=0.244 Sum_probs=40.7
Q ss_pred cCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150 138 KVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 204 (430)
Q Consensus 138 ~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c 204 (430)
.+|..+. ++|+.|+|+++.+.. +..+.++++|++|+|.++.+..- ...++..+++|++|.+.++
T Consensus 30 ~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSS
T ss_pred ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCC
Confidence 3554332 567788888777654 23566778888888877765421 1233456777888877765
No 40
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.74 E-value=1.4e-09 Score=100.53 Aligned_cols=230 Identities=18% Similarity=0.168 Sum_probs=125.8
Q ss_pred CCceEEEEEecCCCcccCCCcc-cccCceeEEEEeeeeecC----CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccc
Q 014150 122 SCVKEFILEIWKGQRYKVPSSL-FLCQNLIHLELFNCLLKP----PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTL 196 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~~~~----~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~L 196 (430)
.+++.+++..... ..+|..+ ..+++|++|+|++|.+.. +..+..+++|+.|+|+++.+.. +...+..+++|
T Consensus 28 ~~l~~L~L~~n~l--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L 103 (306)
T 2z66_A 28 SSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQL 103 (306)
T ss_dssp TTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTC
T ss_pred CCCCEEECCCCcc--CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCC
Confidence 4566666654322 2455543 456778888887776542 1233457778888887776542 12224567777
Q ss_pred cceEeeccCCceEE-----EEeCCCcceEEEecccc----ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhc
Q 014150 197 ERLTLMNFDGFTHL-----NIDAPNLQFFDIGGVFD----DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFV 267 (430)
Q Consensus 197 e~L~l~~c~~~~~l-----~i~~p~L~~L~l~~~~~----~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~ 267 (430)
++|.+.++.- ..+ --..++|+.|.+.++.. ...+..+++|+.|+++.+...+. .+...+.
T Consensus 104 ~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~~~ 172 (306)
T 2z66_A 104 EHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN----------FLPDIFT 172 (306)
T ss_dssp CEEECTTSEE-ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG----------EECSCCT
T ss_pred CEEECCCCcc-cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc----------cchhHHh
Confidence 7777776421 100 01235677777765321 12355678888888865543210 0112356
Q ss_pred cCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccc
Q 014150 268 HLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLT 347 (430)
Q Consensus 268 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~ 347 (430)
.+++|++|+++.+.+.... +..+. .+++|+.|+++.+...... ...+..+++|+.|+++++.-....
T Consensus 173 ~l~~L~~L~Ls~n~l~~~~----~~~~~-~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~---- 239 (306)
T 2z66_A 173 ELRNLTFLDLSQCQLEQLS----PTAFN-SLSSLQVLNMSHNNFFSLD----TFPYKCLNSLQVLDYSLNHIMTSK---- 239 (306)
T ss_dssp TCTTCCEEECTTSCCCEEC----TTTTT-TCTTCCEEECTTSCCSBCC----SGGGTTCTTCCEEECTTSCCCBCS----
T ss_pred hCcCCCEEECCCCCcCCcC----HHHhc-CCCCCCEEECCCCccCccC----hhhccCcccCCEeECCCCCCcccC----
Confidence 7888999999887654321 11121 4668888888433221110 113577899999999887543110
Q ss_pred cceecccccccccCceEEEEEe--eecCccHHHHHHHH
Q 014150 348 NFWEVDHWTSLFSQLRMVKIVG--ISGIRSELEFIKFV 383 (430)
Q Consensus 348 ~~w~~~~~~~~~~~L~~v~i~~--~~~~~~e~~~~~~i 383 (430)
........++|+.+.+.+ +.+.+....+..++
T Consensus 240 ----~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l 273 (306)
T 2z66_A 240 ----KQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 273 (306)
T ss_dssp ----SSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHH
T ss_pred ----HHHHHhhhccCCEEEccCCCeecccChHHHHHHH
Confidence 001111225788888775 44444444444443
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.74 E-value=7e-09 Score=99.37 Aligned_cols=145 Identities=13% Similarity=0.058 Sum_probs=68.3
Q ss_pred CCcceEEEeccc-cceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCC
Q 014150 215 PNLQFFDIGGVF-DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSR 293 (430)
Q Consensus 215 p~L~~L~l~~~~-~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 293 (430)
++|+.|++.++. ..+.....++|+.|+++.+...+ . ..+..+++|++|+++.+.+...... .
T Consensus 205 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~---------~----~~l~~l~~L~~L~Ls~n~l~~~~~~----~ 267 (390)
T 3o6n_A 205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD---------T----AWLLNYPGLVEVDLSYNELEKIMYH----P 267 (390)
T ss_dssp SSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC---------C----GGGGGCTTCSEEECCSSCCCEEESG----G
T ss_pred CcceEEECCCCeeeeccccccccccEEECCCCCCcc---------c----HHHcCCCCccEEECCCCcCCCcChh----H
Confidence 456666665532 11222234567777765443211 0 2356677777777776654322111 0
Q ss_pred CCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceecccccccccCceEEEEEeeecC
Q 014150 294 LPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGI 373 (430)
Q Consensus 294 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~ 373 (430)
+. .+++|+.|+++.+.... ++.....+|+|+.|+++++.-... .. .-..+.+|+.+.+.+-.-.
T Consensus 268 ~~-~l~~L~~L~L~~n~l~~-----~~~~~~~l~~L~~L~L~~n~l~~~---------~~-~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 268 FV-KMQRLERLYISNNRLVA-----LNLYGQPIPTLKVLDLSHNHLLHV---------ER-NQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp GT-TCSSCCEEECCSSCCCE-----EECSSSCCTTCCEEECCSSCCCCC---------GG-GHHHHTTCSEEECCSSCCC
T ss_pred cc-ccccCCEEECCCCcCcc-----cCcccCCCCCCCEEECCCCcceec---------Cc-cccccCcCCEEECCCCccc
Confidence 11 34566666664322111 122234567777777766543210 00 0013456666666543211
Q ss_pred ccHHHHHHHHHccCCCcceEEEeecC
Q 014150 374 RSELEFIKFVLSNSPVLETMTIKPAS 399 (430)
Q Consensus 374 ~~e~~~~~~il~~~~~L~~l~i~~~~ 399 (430)
.- -+...+.|+++.+..++
T Consensus 332 ~~-------~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 332 TL-------KLSTHHTLKNLTLSHND 350 (390)
T ss_dssp CC-------CCCTTCCCSEEECCSSC
T ss_pred ee-------CchhhccCCEEEcCCCC
Confidence 11 04556667776666554
No 42
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.74 E-value=1.1e-08 Score=94.73 Aligned_cols=185 Identities=16% Similarity=0.126 Sum_probs=116.4
Q ss_pred CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 201 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l 201 (430)
.+++++++..+.. ..+| .+..+++|+.|++++|.+.....+..+++|+.|+|.++.+.+- . .+..+++|++|.+
T Consensus 41 ~~L~~L~l~~~~i--~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGV--TTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCc--cCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEEC
Confidence 4677776643322 2344 3566788888888888776643477888888888888876543 1 3667888888888
Q ss_pred eccCCceEEE--EeCCCcceEEEeccc-cce-eeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEE
Q 014150 202 MNFDGFTHLN--IDAPNLQFFDIGGVF-DDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEI 277 (430)
Q Consensus 202 ~~c~~~~~l~--i~~p~L~~L~l~~~~-~~~-~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 277 (430)
.++.- ..+. -..++|+.|.+.++. ..+ .+..+++|+.|+++.+...+. . . +..+++|+.|++
T Consensus 115 ~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~---------~---~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 115 TSTQI-TDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL---------T---P-LANLSKLTTLKA 180 (308)
T ss_dssp TTSCC-CCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---------G---G-GTTCTTCCEEEC
T ss_pred CCCCC-CCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCC---------h---h-hcCCCCCCEEEC
Confidence 87642 1111 123677777776632 111 256788888888865432211 1 1 577888999999
Q ss_pred eeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150 278 QSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 339 (430)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 339 (430)
+.+.+..+.. + ..+++|++|+++.+.... +.. +..+|+|+.|++.++.-
T Consensus 181 ~~n~l~~~~~------l-~~l~~L~~L~L~~N~l~~-----~~~-l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 181 DDNKISDISP------L-ASLPNLIEVHLKNNQISD-----VSP-LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CSSCCCCCGG------G-GGCTTCCEEECTTSCCCB-----CGG-GTTCTTCCEEEEEEEEE
T ss_pred CCCccCcChh------h-cCCCCCCEEEccCCccCc-----ccc-ccCCCCCCEEEccCCee
Confidence 8876643211 1 246688888885433221 111 67889999999888653
No 43
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.74 E-value=4.2e-09 Score=95.71 Aligned_cols=80 Identities=20% Similarity=0.134 Sum_probs=49.4
Q ss_pred CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 201 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l 201 (430)
+.++++.+..... ..+ ..+..+++|+.|++++|.+.....+..+++|++|+|.++.+..- ....+..++.|++|.+
T Consensus 41 ~~L~~L~l~~~~i--~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDI--KSV-QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCC--CCC-TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCc--ccc-cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEEC
Confidence 4566665543321 122 23556677788888777766655566777788888777766532 2233566777777777
Q ss_pred eccC
Q 014150 202 MNFD 205 (430)
Q Consensus 202 ~~c~ 205 (430)
.++.
T Consensus 117 ~~n~ 120 (272)
T 3rfs_A 117 VENQ 120 (272)
T ss_dssp TTSC
T ss_pred CCCc
Confidence 7653
No 44
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.73 E-value=1.3e-08 Score=102.37 Aligned_cols=239 Identities=15% Similarity=0.093 Sum_probs=135.3
Q ss_pred CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 201 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l 201 (430)
++++.+++..... ..+|..+..+ +|++|++++|.+..-+ ...+++|+.|++.++.+....-. ..+|+|++|++
T Consensus 282 ~~L~~L~l~~~~l--~~l~~~~~~~-~L~~L~l~~n~~~~l~-~~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l 354 (570)
T 2z63_A 282 TNVSSFSLVSVTI--ERVKDFSYNF-GWQHLELVNCKFGQFP-TLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDL 354 (570)
T ss_dssp TTCSEEEEESCEE--CSCCBCCSCC-CCSEEEEESCBCSSCC-BCBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEEC
T ss_pred CcccEEEecCccc--hhhhhhhccC-CccEEeeccCcccccC-cccccccCEEeCcCCcccccccc---ccCCCCCEEeC
Confidence 6788888865432 3577777777 8999999988776422 24678888888888765432111 56888888888
Q ss_pred eccCCceEEE------EeCCCcceEEEecccc---ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCc
Q 014150 202 MNFDGFTHLN------IDAPNLQFFDIGGVFD---DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHI 272 (430)
Q Consensus 202 ~~c~~~~~l~------i~~p~L~~L~l~~~~~---~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 272 (430)
.++.-. .+. ...++|+.|++.++.. ...+..+++|+.|++..+....... ...+.++++|
T Consensus 355 ~~n~l~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~~~~~~l~~L 423 (570)
T 2z63_A 355 SRNGLS-FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE----------FSVFLSLRNL 423 (570)
T ss_dssp CSSCCB-EEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTT----------SCTTTTCTTC
T ss_pred cCCccC-ccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccc----------hhhhhcCCCC
Confidence 876432 221 1247888888776321 1125677888888876543321100 0124667788
Q ss_pred cEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceec
Q 014150 273 RRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEV 352 (430)
Q Consensus 273 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~ 352 (430)
++|+++.+.+... .+..+ ..+++|+.|++..+..... .++..+..+++|+.|+|.++.-... ..
T Consensus 424 ~~L~l~~n~l~~~----~~~~~-~~l~~L~~L~l~~n~l~~~---~~p~~~~~l~~L~~L~l~~n~l~~~--------~~ 487 (570)
T 2z63_A 424 IYLDISHTHTRVA----FNGIF-NGLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQL--------SP 487 (570)
T ss_dssp CEEECTTSCCEEC----CTTTT-TTCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEE--------CT
T ss_pred CEEeCcCCccccc----chhhh-hcCCcCcEEECcCCcCccc---cchhhhhcccCCCEEECCCCccccC--------Ch
Confidence 8888877654321 11111 1456777777733221100 1234466778888888877643210 00
Q ss_pred ccccccccCceEEEEEeeecCccHHHHHHHHHccCCCcceEEEeecC
Q 014150 353 DHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPAS 399 (430)
Q Consensus 353 ~~~~~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~~~~ 399 (430)
. .-..+++|+.+.+.+-.-.. +....+.+.++|+.+.+..++
T Consensus 488 ~-~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 488 T-AFNSLSSLQVLNMASNQLKS----VPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp T-TTTTCTTCCEEECCSSCCSC----CCTTTTTTCTTCCEEECCSSC
T ss_pred h-hhhcccCCCEEeCCCCcCCC----CCHHHhhcccCCcEEEecCCc
Confidence 0 01134667777666421110 111234667777777777654
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.73 E-value=7.2e-09 Score=96.19 Aligned_cols=194 Identities=18% Similarity=0.107 Sum_probs=119.5
Q ss_pred CCceEEEEEecCCC-cccCCCcccccCceeEEEEee-eeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCcccc
Q 014150 122 SCVKEFILEIWKGQ-RYKVPSSLFLCQNLIHLELFN-CLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLE 197 (430)
Q Consensus 122 ~~l~~l~l~~~~~~-~~~lp~~~~~~~~L~~L~L~~-~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le 197 (430)
..++++++...... ...+|..+..+++|++|++++ +.+.. |..+.++++|++|+|+++.+.+. +...+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCC
Confidence 46777777654332 126788888999999999995 66653 55688999999999999987643 344567899999
Q ss_pred ceEeeccCCceEEE---EeCCCcceEEEecccc----ceeeccCC-CceEEEEEEEeeccccccCCCCCcchHHHHhccC
Q 014150 198 RLTLMNFDGFTHLN---IDAPNLQFFDIGGVFD----DVTFENTF-HLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHL 269 (430)
Q Consensus 198 ~L~l~~c~~~~~l~---i~~p~L~~L~l~~~~~----~~~~~~~p-~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (430)
+|++.++.-...+. -..++|+.|++.++.- ...+..++ +|+.++++.+..... ....+..+
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~-----------~~~~~~~l 197 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK-----------IPPTFANL 197 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE-----------CCGGGGGC
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc-----------CChHHhCC
Confidence 99999763211110 1246788888776421 12344555 778887765433211 01223444
Q ss_pred CCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150 270 PHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 338 (430)
Q Consensus 270 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 338 (430)
+ |+.|+++.+.+..... ..+ ..+++|+.|+++.+..... + ..+..+++|++|+++++.
T Consensus 198 ~-L~~L~Ls~N~l~~~~~----~~~-~~l~~L~~L~L~~N~l~~~----~-~~~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 198 N-LAFVDLSRNMLEGDAS----VLF-GSDKNTQKIHLAKNSLAFD----L-GKVGLSKNLNGLDLRNNR 255 (313)
T ss_dssp C-CSEEECCSSEEEECCG----GGC-CTTSCCSEEECCSSEECCB----G-GGCCCCTTCCEEECCSSC
T ss_pred c-ccEEECcCCcccCcCC----HHH-hcCCCCCEEECCCCceeee----c-CcccccCCCCEEECcCCc
Confidence 4 8888887776542111 111 1456777777743322111 1 124667888888887765
No 46
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.72 E-value=1.1e-08 Score=100.90 Aligned_cols=176 Identities=16% Similarity=0.064 Sum_probs=90.3
Q ss_pred cccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE----EeCC
Q 014150 142 SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN----IDAP 215 (430)
Q Consensus 142 ~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~----i~~p 215 (430)
.+..+++|+.|++++|.+.. +..|.++++|+.|+|.++.+..- ....+..+++|+.|.+.++.-. .+. -..+
T Consensus 123 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~-~~~~~~~~~l~ 200 (477)
T 2id5_A 123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI-PTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLY 200 (477)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC-CHHHHTTCTTCCEEEEESCCCC-EECTTCSCSCT
T ss_pred HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc-ChhHhcccCCCcEEeCCCCcCc-EeChhhcccCc
Confidence 34455666666666665432 33455666666666666655432 1233556666777766654321 111 1235
Q ss_pred CcceEEEecccc--ce--eeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCC
Q 014150 216 NLQFFDIGGVFD--DV--TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVP 291 (430)
Q Consensus 216 ~L~~L~l~~~~~--~~--~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 291 (430)
+|+.|++.++.. .+ .....++|+.|+++.+.... .-...+..+++|+.|+|+.+.+......
T Consensus 201 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--- 266 (477)
T 2id5_A 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-----------VPYLAVRHLVYLRFLNLSYNPISTIEGS--- 266 (477)
T ss_dssp TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS-----------CCHHHHTTCTTCCEEECCSSCCCEECTT---
T ss_pred ccceeeCCCCccccccCcccccCccccEEECcCCcccc-----------cCHHHhcCccccCeeECCCCcCCccChh---
Confidence 666666655211 00 11123356666665442211 0123467778888888887765432111
Q ss_pred CCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150 292 SRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 339 (430)
Q Consensus 292 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 339 (430)
.+ ..+++|+.|+++.+..... .+..+..+++|+.|+|+++.-
T Consensus 267 -~~-~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l 308 (477)
T 2id5_A 267 -ML-HELLRLQEIQLVGGQLAVV----EPYAFRGLNYLRVLNVSGNQL 308 (477)
T ss_dssp -SC-TTCTTCCEEECCSSCCSEE----CTTTBTTCTTCCEEECCSSCC
T ss_pred -hc-cccccCCEEECCCCccceE----CHHHhcCcccCCEEECCCCcC
Confidence 11 1455777777743322111 122356677777777777643
No 47
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.72 E-value=7.1e-09 Score=99.32 Aligned_cols=119 Identities=15% Similarity=0.158 Sum_probs=69.6
Q ss_pred CCceEEEEEecCCCcccCCC-cccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150 122 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 198 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~ 198 (430)
++++.+++..... ..++. .+..+++|++|+|++|.+.. +..+.++++|+.|+|.++.+..- ...++..+++|++
T Consensus 69 ~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 69 RQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTT 145 (390)
T ss_dssp CCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred ccCcEEECCCCcc--cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcC-CHHHhcCCCCCcE
Confidence 5677776643322 22333 44566778888888777654 33466778888888887776521 1233566778888
Q ss_pred eEeeccCCceEEE---E-eCCCcceEEEecc-ccceeeccCCCceEEEEEE
Q 014150 199 LTLMNFDGFTHLN---I-DAPNLQFFDIGGV-FDDVTFENTFHLALVSIGL 244 (430)
Q Consensus 199 L~l~~c~~~~~l~---i-~~p~L~~L~l~~~-~~~~~~~~~p~L~~l~i~~ 244 (430)
|.+.++.-. .+. + ..++|+.|.+.++ ...+.+..+++|+.+++..
T Consensus 146 L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 146 LSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY 195 (390)
T ss_dssp EECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCS
T ss_pred EECCCCccC-ccChhhccCCCCCCEEECCCCcCCccccccccccceeeccc
Confidence 888765321 111 1 2367777777653 2333445566666666643
No 48
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.72 E-value=4.6e-09 Score=106.51 Aligned_cols=62 Identities=21% Similarity=0.157 Sum_probs=30.0
Q ss_pred hccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150 266 FVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 338 (430)
Q Consensus 266 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 338 (430)
+..+++|+.|+|+++.+..+... ...+++|+.|+++.+... .++.-+..+|+|+.|+|.++.
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~l~~~------~~~l~~L~~L~Ls~N~l~-----~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVALNLY------GQPIPTLKVLDLSHNHLL-----HVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp GTTCSSCCEEECTTSCCCEEECS------SSCCTTCCEEECCSSCCC-----CCGGGHHHHTTCSEEECCSSC
T ss_pred hcCccCCCEEECCCCCCCCCCcc------cccCCCCcEEECCCCCCC-----ccCcccccCCCCCEEECCCCC
Confidence 34555555555555544321110 013556666666433221 122234556677777776654
No 49
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.70 E-value=1.7e-09 Score=109.85 Aligned_cols=232 Identities=15% Similarity=0.074 Sum_probs=113.7
Q ss_pred ccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEE-eCCCcceEE
Q 014150 143 LFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI-DAPNLQFFD 221 (430)
Q Consensus 143 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i-~~p~L~~L~ 221 (430)
+..+++|+.|+++++.+...+.+..+++|++|++.++.+. .+..+ .++.|++|.+.++.....+.+ ..++|+.|+
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 4455777777777776655445667777777777777762 23322 677777777777644332221 235666666
Q ss_pred Eecccc------ceeeccCCCceEEEEEEEeeccccccCC---------CC--C-cchH-HHHhccCCCccEEEEeeeee
Q 014150 222 IGGVFD------DVTFENTFHLALVSIGLYVNVKNDQAMG---------PG--N-SCKL-LRFFVHLPHIRRLEIQSYFL 282 (430)
Q Consensus 222 l~~~~~------~~~~~~~p~L~~l~i~~~~~~~~~~~~~---------~~--~-~~~~-~~~l~~~~~L~~L~l~~~~~ 282 (430)
+.++.- ...+..+++|+.|+++.+........+. .. . .... ...+..+++|++|+++.+.+
T Consensus 357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436 (606)
T ss_dssp CCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred CcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence 654311 1123455666666665432211000000 00 0 0000 01234555666666655543
Q ss_pred ehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceecccccccccCc
Q 014150 283 KYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQL 362 (430)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L 362 (430)
... .+..+. .+++|+.|+++.+..... .++..+..+++|+.|+++++.-... ... .-..+++|
T Consensus 437 ~~~----~~~~~~-~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~--------~~~-~~~~l~~L 499 (606)
T 3vq2_A 437 KID----FDGIFL-GLTSLNTLKMAGNSFKDN---TLSNVFANTTNLTFLDLSKCQLEQI--------SWG-VFDTLHRL 499 (606)
T ss_dssp EEC----CTTTTT-TCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEE--------CTT-TTTTCTTC
T ss_pred Ccc----chhhhc-CCCCCCEEECCCCcCCCc---chHHhhccCCCCCEEECCCCcCCcc--------Chh-hhcccccC
Confidence 211 111111 345666666632211100 0233456667777777766543210 000 01135778
Q ss_pred eEEEEEeeecCccHHHHHHHHHccCCCcceEEEeecC
Q 014150 363 RMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPAS 399 (430)
Q Consensus 363 ~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~~~~ 399 (430)
+.+.+.+-.-.. .....+.+.++|+.+.+..+.
T Consensus 500 ~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 500 QLLNMSHNNLLF----LDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp CEEECCSSCCSC----EEGGGTTTCTTCCEEECTTSC
T ss_pred CEEECCCCcCCC----cCHHHccCCCcCCEEECCCCc
Confidence 887776532211 111235677889998888655
No 50
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.70 E-value=3.2e-09 Score=111.22 Aligned_cols=146 Identities=12% Similarity=0.077 Sum_probs=84.3
Q ss_pred CCceEEEEEecCCCcccCCC--cccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCcc-ccc
Q 014150 122 SCVKEFILEIWKGQRYKVPS--SLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPT-LER 198 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~-Le~ 198 (430)
++++.|++..+... .+|. .+..+++|+.|+|++|.+..-+.+..+++|+.|+|+++.+. .+...+..++. |+.
T Consensus 548 ~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~ 623 (876)
T 4ecn_A 548 PKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEG 623 (876)
T ss_dssp TTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCE
T ss_pred CCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc--cchHHHhhccccCCE
Confidence 36777776554332 6777 67777888888888877654336777888888888887765 34444666777 888
Q ss_pred eEeeccCCceEEE--E---eCCCcceEEEeccccc-----e--eec--cCCCceEEEEEEEeeccccccCCCCCcchHHH
Q 014150 199 LTLMNFDGFTHLN--I---DAPNLQFFDIGGVFDD-----V--TFE--NTFHLALVSIGLYVNVKNDQAMGPGNSCKLLR 264 (430)
Q Consensus 199 L~l~~c~~~~~l~--i---~~p~L~~L~l~~~~~~-----~--~~~--~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~ 264 (430)
|.+.++.- ..+. + ..++|+.|.+.++.-. + .+. ..++|+.|+++.+..... -..
T Consensus 624 L~Ls~N~L-~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~l-----------p~~ 691 (876)
T 4ecn_A 624 LGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF-----------PTE 691 (876)
T ss_dssp EECCSSCC-CSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSC-----------CHH
T ss_pred EECcCCCC-CcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCcc-----------CHH
Confidence 88887642 1111 0 1134667776653210 0 011 234666666654332110 023
Q ss_pred HhccCCCccEEEEeeeeee
Q 014150 265 FFVHLPHIRRLEIQSYFLK 283 (430)
Q Consensus 265 ~l~~~~~L~~L~l~~~~~~ 283 (430)
++..+++|+.|.|+.+.+.
T Consensus 692 ~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 692 LFATGSPISTIILSNNLMT 710 (876)
T ss_dssp HHHTTCCCSEEECCSCCCS
T ss_pred HHccCCCCCEEECCCCcCC
Confidence 3446677777777766544
No 51
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.70 E-value=1.2e-08 Score=94.35 Aligned_cols=185 Identities=16% Similarity=0.133 Sum_probs=122.2
Q ss_pred ccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE--EeCCCcceEEE
Q 014150 145 LCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN--IDAPNLQFFDI 222 (430)
Q Consensus 145 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~--i~~p~L~~L~l 222 (430)
.+++|++|+++++.+....++..+++|+.|+|+++.+.+-. . +..+++|+.|.+.++. +..+. -..++|+.|.+
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~--~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCCh--h-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEEC
Confidence 46899999999998877567888999999999999876432 2 7889999999999874 22221 12468888888
Q ss_pred eccc-cce-eeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccc
Q 014150 223 GGVF-DDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVD 300 (430)
Q Consensus 223 ~~~~-~~~-~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 300 (430)
.++. ..+ .+..+++|+.|+++.+..... .. +..+++|+.|.++.+.+..+.. + ..+++
T Consensus 115 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~---------~~----l~~l~~L~~L~l~~n~l~~~~~------l-~~l~~ 174 (308)
T 1h6u_A 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNI---------SP----LAGLTNLQYLSIGNAQVSDLTP------L-ANLSK 174 (308)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECCSSCCCCC---------GG----GGGCTTCCEEECCSSCCCCCGG------G-TTCTT
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCccCcC---------cc----ccCCCCccEEEccCCcCCCChh------h-cCCCC
Confidence 7642 111 256788888888865432211 11 5778888999888776543211 1 14668
Q ss_pred cceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceecccccccccCceEEEEEee
Q 014150 301 LNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGI 370 (430)
Q Consensus 301 L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~ 370 (430)
|+.|+++.+.... +.. +..+++|+.|+++++.-... . .-..+++|+.+.+.+-
T Consensus 175 L~~L~l~~n~l~~-----~~~-l~~l~~L~~L~L~~N~l~~~--------~---~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 175 LTTLKADDNKISD-----ISP-LASLPNLIEVHLKNNQISDV--------S---PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp CCEEECCSSCCCC-----CGG-GGGCTTCCEEECTTSCCCBC--------G---GGTTCTTCCEEEEEEE
T ss_pred CCEEECCCCccCc-----Chh-hcCCCCCCEEEccCCccCcc--------c---cccCCCCCCEEEccCC
Confidence 8888885443221 111 67888899988888754310 0 0113567777777654
No 52
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.66 E-value=4e-08 Score=84.56 Aligned_cols=55 Identities=25% Similarity=0.292 Sum_probs=23.9
Q ss_pred CceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150 147 QNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 204 (430)
Q Consensus 147 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c 204 (430)
++|+.|+++++.+..-+++..+++|++|++.++.+..- . .++.+++|++|.+.++
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n 98 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGK 98 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECT
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECC
Confidence 44455555554444322344455555555554433211 1 2334444555544443
No 53
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.64 E-value=1.8e-08 Score=98.56 Aligned_cols=180 Identities=15% Similarity=0.106 Sum_probs=110.2
Q ss_pred CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 201 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l 201 (430)
++++.+++..+... .+| +..+++|++|++++|.+... .+.++++|+.|+|.++.+.+- . +..+++|+.|.+
T Consensus 64 ~~L~~L~Ls~n~l~--~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNIT--TLD--LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCS--CCC--CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCC--eEc--cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEEC
Confidence 56666666543322 223 45567777777777766553 366777777777777766542 2 566777777777
Q ss_pred eccCCceEEEE-eCCCcceEEEecc--ccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEe
Q 014150 202 MNFDGFTHLNI-DAPNLQFFDIGGV--FDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ 278 (430)
Q Consensus 202 ~~c~~~~~l~i-~~p~L~~L~l~~~--~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 278 (430)
.++.- ..+.+ ..++|+.|.+.++ ...+.+..+++|+.|+++.+.... +. +..+++|+.|.++
T Consensus 135 ~~N~l-~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~------------l~--l~~l~~L~~L~l~ 199 (457)
T 3bz5_A 135 ARNTL-TEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE------------LD--VSQNKLLNRLNCD 199 (457)
T ss_dssp TTSCC-SCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC------------CC--CTTCTTCCEEECC
T ss_pred CCCcc-ceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce------------ec--cccCCCCCEEECc
Confidence 76532 22222 2356777777654 233345667777777776543211 11 4677888888888
Q ss_pred eeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCC
Q 014150 279 SYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEE 340 (430)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~ 340 (430)
.+.+..+. +. .+++|+.|+++.+.... ++ +..+++|+.|++.++.-.
T Consensus 200 ~N~l~~~~-------l~-~l~~L~~L~Ls~N~l~~-----ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 200 TNNITKLD-------LN-QNIQLTFLDCSSNKLTE-----ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp SSCCSCCC-------CT-TCTTCSEEECCSSCCSC-----CC--CTTCTTCSEEECCSSCCS
T ss_pred CCcCCeec-------cc-cCCCCCEEECcCCcccc-----cC--ccccCCCCEEEeeCCcCC
Confidence 77665331 11 46789988885443222 33 678999999999887543
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.64 E-value=5.2e-09 Score=97.97 Aligned_cols=105 Identities=19% Similarity=0.186 Sum_probs=65.1
Q ss_pred cCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEE-eC
Q 014150 138 KVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI-DA 214 (430)
Q Consensus 138 ~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i-~~ 214 (430)
.+|..+. ++|+.|+++++.+.. +..+.++++|++|+|.++.+..- ....+..+++|++|.+.++.- ..+.. ..
T Consensus 47 ~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~ 122 (332)
T 2ft3_A 47 AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYISKNHL-VEIPPNLP 122 (332)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEECCSSCC-CSCCSSCC
T ss_pred ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEECCCCcC-CccCcccc
Confidence 4555442 578888888876653 34577788888888888776532 123456788888888876532 11110 11
Q ss_pred CCcceEEEeccc-c---ceeeccCCCceEEEEEEEe
Q 014150 215 PNLQFFDIGGVF-D---DVTFENTFHLALVSIGLYV 246 (430)
Q Consensus 215 p~L~~L~l~~~~-~---~~~~~~~p~L~~l~i~~~~ 246 (430)
++|+.|++.++. . ...+..+++|+.|+++.+.
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc
Confidence 678888877632 1 1235667888888776543
No 55
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.64 E-value=7.5e-09 Score=104.25 Aligned_cols=231 Identities=14% Similarity=0.073 Sum_probs=134.1
Q ss_pred CceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechh-hHHHHhhcCccccceEe
Q 014150 123 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQD-VFENLISSSPTLERLTL 201 (430)
Q Consensus 123 ~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~l~~l~s~cp~Le~L~l 201 (430)
+++++++..+... .+|. ..+++|+.|+++++.+........+++|+.|++.++.+... .....+..+++|+.|.+
T Consensus 305 ~L~~L~l~~n~~~--~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l 380 (570)
T 2z63_A 305 GWQHLELVNCKFG--QFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380 (570)
T ss_dssp CCSEEEEESCBCS--SCCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEEC
T ss_pred CccEEeeccCccc--ccCc--ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEEC
Confidence 6777777654332 4554 35678888888888765533335788888888888876532 12344667888888888
Q ss_pred eccCCce--EEEEeCCCcceEEEecccc-----ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccE
Q 014150 202 MNFDGFT--HLNIDAPNLQFFDIGGVFD-----DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRR 274 (430)
Q Consensus 202 ~~c~~~~--~l~i~~p~L~~L~l~~~~~-----~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 274 (430)
.++.-.. .---..++|+.|.+.++.- ...+..+++|+.|+++.+..... ....+.++++|++
T Consensus 381 ~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~l~~L~~ 449 (570)
T 2z63_A 381 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-----------FNGIFNGLSSLEV 449 (570)
T ss_dssp CSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC-----------CTTTTTTCTTCCE
T ss_pred CCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc-----------chhhhhcCCcCcE
Confidence 8774221 1112457888888876321 12356778888888865432211 1223567888888
Q ss_pred EEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceeccc
Q 014150 275 LEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDH 354 (430)
Q Consensus 275 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~ 354 (430)
|.++++.+.. +..+..+. .+++|+.|+++.+..... .+..+..+|+|+.|+|+++.-.... ..
T Consensus 450 L~l~~n~l~~---~~~p~~~~-~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~--------~~- 512 (570)
T 2z63_A 450 LKMAGNSFQE---NFLPDIFT-ELRNLTFLDLSQCQLEQL----SPTAFNSLSSLQVLNMASNQLKSVP--------DG- 512 (570)
T ss_dssp EECTTCEEGG---GEECSCCT-TCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSCCSCCC--------TT-
T ss_pred EECcCCcCcc---ccchhhhh-cccCCCEEECCCCccccC----ChhhhhcccCCCEEeCCCCcCCCCC--------HH-
Confidence 8888776531 11111111 466788888744322111 1234667888888888876533100 00
Q ss_pred ccccccCceEEEEEe--eecCccHHHHH-HHHHc
Q 014150 355 WTSLFSQLRMVKIVG--ISGIRSELEFI-KFVLS 385 (430)
Q Consensus 355 ~~~~~~~L~~v~i~~--~~~~~~e~~~~-~~il~ 385 (430)
.-..+++|+.+.+.+ +.+......+. .++-.
T Consensus 513 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~ 546 (570)
T 2z63_A 513 IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 546 (570)
T ss_dssp TTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred HhhcccCCcEEEecCCcccCCCcchHHHHHHHHh
Confidence 011356788888775 34444444554 44333
No 56
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.63 E-value=1.9e-08 Score=105.37 Aligned_cols=201 Identities=11% Similarity=0.082 Sum_probs=120.1
Q ss_pred CCceEEEEEecCCCcc----------------cCCCccc--ccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEE-
Q 014150 122 SCVKEFILEIWKGQRY----------------KVPSSLF--LCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT- 180 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~----------------~lp~~~~--~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~- 180 (430)
.+++.|++........ .+|..+. .+++|+.|+|++|.+.. |..+.++++|+.|+|+++.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 6888998876543221 2888877 89999999999997654 5567899999999999997
Q ss_pred echhhHHHH-------hhcCccccceEeeccCCceEEEE-----eCCCcceEEEeccc-cce-eeccCCCceEEEEEEEe
Q 014150 181 LSQDVFENL-------ISSSPTLERLTLMNFDGFTHLNI-----DAPNLQFFDIGGVF-DDV-TFENTFHLALVSIGLYV 246 (430)
Q Consensus 181 ~~~~~l~~l-------~s~cp~Le~L~l~~c~~~~~l~i-----~~p~L~~L~l~~~~-~~~-~~~~~p~L~~l~i~~~~ 246 (430)
+++..+..- +..+|+|+.|.+.++.-. .+.- ..++|+.|.+.++. ..+ .+..+++|+.|+++.+.
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSC
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCc
Confidence 765223322 245679999999987532 2221 34678888887632 111 45677788888776543
Q ss_pred eccccccCCCCCcchHHHHhccCCC-ccEEEEeeeeeehhhccc--------------------CCCCCCc-----cccc
Q 014150 247 NVKNDQAMGPGNSCKLLRFFVHLPH-IRRLEIQSYFLKYLAIGN--------------------VPSRLPR-----PCVD 300 (430)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~--------------------~~~~~~~-----~~~~ 300 (430)
.... ...+..+++ |+.|.|+.+.+..+.... ....++. ..++
T Consensus 607 l~~l------------p~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 607 IEEI------------PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp CSCC------------CTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred cccc------------hHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 2211 111345555 666666655433211000 0000110 1236
Q ss_pred cceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150 301 LNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 339 (430)
Q Consensus 301 L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 339 (430)
|+.|+++.+... .+ -..++..+++|+.|+|+.+.-
T Consensus 675 L~~L~Ls~N~L~--~l--p~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 675 ASTVTLSYNEIQ--KF--PTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp EEEEECCSSCCC--SC--CHHHHHTTCCCSEEECCSCCC
T ss_pred cCEEEccCCcCC--cc--CHHHHccCCCCCEEECCCCcC
Confidence 777766443222 11 123456889999999887653
No 57
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.62 E-value=2.6e-09 Score=101.38 Aligned_cols=240 Identities=11% Similarity=0.068 Sum_probs=129.4
Q ss_pred cCceeEEEEeeeeecCC------CCCCCCC-CcceEEeeeEEechh---hHHHHhhcC-ccccceEeeccCCceEEE---
Q 014150 146 CQNLIHLELFNCLLKPP------STFKGFR-NLKSLDLQHITLSQD---VFENLISSS-PTLERLTLMNFDGFTHLN--- 211 (430)
Q Consensus 146 ~~~L~~L~L~~~~~~~~------~~~~~~~-~L~~L~L~~~~~~~~---~l~~l~s~c-p~Le~L~l~~c~~~~~l~--- 211 (430)
.++|++|+|++|.+... ..+..++ +|++|+|+++.+++. .+..++..+ ++|++|++++|.-. ...
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~-~~~~~~ 99 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS-YKSSDE 99 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG-GSCHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC-hHHHHH
Confidence 34577777777766542 2234566 677777777766543 233344443 77777777766421 111
Q ss_pred ----E-eC-CCcceEEEeccc-cce---e----ecc-CCCceEEEEEEEeeccccccCCCCCcchHHHHhccCC-CccEE
Q 014150 212 ----I-DA-PNLQFFDIGGVF-DDV---T----FEN-TFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLP-HIRRL 275 (430)
Q Consensus 212 ----i-~~-p~L~~L~l~~~~-~~~---~----~~~-~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L 275 (430)
+ .. ++|+.|++.++. ... . +.. ..+|++|+++.+...+. ....+...+...+ +|++|
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-------~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK-------SSDELIQILAAIPANVNSL 172 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS-------CHHHHHHHHHTSCTTCCEE
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH-------HHHHHHHHHhcCCccccEe
Confidence 0 11 577777776532 111 1 223 35899999976543211 1234455566676 99999
Q ss_pred EEeeeeeehhhcccCCCCCCccc-cccceeEEEEeeCChhhHHHHHHHHhc-CCCccEEEEeecCCCCcccccccceecc
Q 014150 276 EIQSYFLKYLAIGNVPSRLPRPC-VDLNYLSIRINFNDLEENLAALCLLRS-SPNLQELEMLARPEETGIGVLTNFWEVD 353 (430)
Q Consensus 276 ~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~ll~~-~p~L~~L~l~~~~~~~~~~~~~~~w~~~ 353 (430)
+++.+.+......... ..-..+ .+|++|+++.+.........+...+.. +++|+.|+++++.-......... .
T Consensus 173 ~Ls~n~l~~~~~~~l~-~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~----~ 247 (362)
T 3goz_A 173 NLRGNNLASKNCAELA-KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK----L 247 (362)
T ss_dssp ECTTSCGGGSCHHHHH-HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH----H
T ss_pred eecCCCCchhhHHHHH-HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH----H
Confidence 9998866422110000 000123 489999996554433344456666666 56999999999764311000000 0
Q ss_pred cccccccCceEEEEEeee---cCccHHHHHHHHHccCCCcceEEEeecC
Q 014150 354 HWTSLFSQLRMVKIVGIS---GIRSELEFIKFVLSNSPVLETMTIKPAS 399 (430)
Q Consensus 354 ~~~~~~~~L~~v~i~~~~---~~~~e~~~~~~il~~~~~L~~l~i~~~~ 399 (430)
.-..+++|+.+.+.+-. -.......+...+.+.+.|+.+.++.+.
T Consensus 248 -~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 248 -LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp -TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred -HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 11245789999888654 1112223333334455556666665544
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.61 E-value=2.1e-08 Score=92.63 Aligned_cols=228 Identities=16% Similarity=0.106 Sum_probs=144.0
Q ss_pred ccCCCcccccCceeEEEEeeeeecC-CC-CCCCCCCcceEEeeeEEechh-hHHHHhhcCccccceEeeccCCceEE---
Q 014150 137 YKVPSSLFLCQNLIHLELFNCLLKP-PS-TFKGFRNLKSLDLQHITLSQD-VFENLISSSPTLERLTLMNFDGFTHL--- 210 (430)
Q Consensus 137 ~~lp~~~~~~~~L~~L~L~~~~~~~-~~-~~~~~~~L~~L~L~~~~~~~~-~l~~l~s~cp~Le~L~l~~c~~~~~l--- 210 (430)
..+|..+. ++|++|+|+++.+.. +. .|.++++|+.|+|.++.+... .....+..+++|+.|++.++.- ..+
T Consensus 20 ~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i-~~l~~~ 96 (306)
T 2z66_A 20 TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSN 96 (306)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE-EEEEEE
T ss_pred ccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc-ccChhh
Confidence 45665433 689999999998875 32 367999999999999987532 1123345799999999998742 222
Q ss_pred EEeCCCcceEEEeccc-c---c-eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehh
Q 014150 211 NIDAPNLQFFDIGGVF-D---D-VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYL 285 (430)
Q Consensus 211 ~i~~p~L~~L~l~~~~-~---~-~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 285 (430)
-...++|+.|++.+.. . . ..+..+++|+.|+++.+.... .....+..+++|++|.++.+.+...
T Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-----------AFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-----------CSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc-----------cchhhcccCcCCCEEECCCCccccc
Confidence 2246899999997632 1 1 246678999999986543221 1123367889999999998876421
Q ss_pred hcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceecccccccccCceEE
Q 014150 286 AIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMV 365 (430)
Q Consensus 286 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v 365 (430)
..+..+ ..+++|++|+++.+..... .+..+..+|+|+.|+++++.-.... .. .-..+.+|+.+
T Consensus 166 ---~~~~~~-~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~--------~~-~~~~l~~L~~L 228 (306)
T 2z66_A 166 ---FLPDIF-TELRNLTFLDLSQCQLEQL----SPTAFNSLSSLQVLNMSHNNFFSLD--------TF-PYKCLNSLQVL 228 (306)
T ss_dssp ---EECSCC-TTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECTTSCCSBCC--------SG-GGTTCTTCCEE
T ss_pred ---cchhHH-hhCcCCCEEECCCCCcCCc----CHHHhcCCCCCCEEECCCCccCccC--------hh-hccCcccCCEe
Confidence 111112 2567899999854322211 1234678999999999987643100 00 01135788888
Q ss_pred EEEeeecCccHHHHHHHHHccC-CCcceEEEeecC
Q 014150 366 KIVGISGIRSELEFIKFVLSNS-PVLETMTIKPAS 399 (430)
Q Consensus 366 ~i~~~~~~~~e~~~~~~il~~~-~~L~~l~i~~~~ 399 (430)
.+.+-.-... ....+.+. ++|+.+.+..++
T Consensus 229 ~L~~N~l~~~----~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 229 DYSLNHIMTS----KKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ECTTSCCCBC----SSSSCCCCCTTCCEEECTTCC
T ss_pred ECCCCCCccc----CHHHHHhhhccCCEEEccCCC
Confidence 8774321110 01123445 489999998766
No 59
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.61 E-value=4.9e-08 Score=103.06 Aligned_cols=60 Identities=18% Similarity=0.156 Sum_probs=39.5
Q ss_pred CCceEEEEEecCCCcccCCCc--ccccCceeEEEEeeeeecC---CCCCCCCCCcceEEeeeEEec
Q 014150 122 SCVKEFILEIWKGQRYKVPSS--LFLCQNLIHLELFNCLLKP---PSTFKGFRNLKSLDLQHITLS 182 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~--~~~~~~L~~L~L~~~~~~~---~~~~~~~~~L~~L~L~~~~~~ 182 (430)
.++++|++..+... ..+|.. +..+++|++|+|++|.+.. +..+.++++|++|+|.++.+.
T Consensus 97 ~~L~~L~Ls~n~l~-~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 97 FHLFELRLYFCGLS-DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp SSCCCEECTTCCCS-SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred cccCEeeCcCCCCC-cccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 56777776543221 112332 5567888899998887754 134678888888888888764
No 60
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.60 E-value=4.4e-09 Score=107.45 Aligned_cols=146 Identities=14% Similarity=0.096 Sum_probs=87.1
Q ss_pred CCceEEEEEecCCCcccCCC--cccccCceeEEEEeeeeec-CCCCCCCCCCcceEEeeeEEechhhHHHHhhcCcc-cc
Q 014150 122 SCVKEFILEIWKGQRYKVPS--SLFLCQNLIHLELFNCLLK-PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPT-LE 197 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~-Le 197 (430)
.++++|++..+... .+|. .+..+++|+.|++++|.+. .-+.+..+++|+.|+|.++.+. .+..-+..++. |+
T Consensus 305 ~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~ 380 (636)
T 4eco_A 305 EKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVE 380 (636)
T ss_dssp GTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE--ECCTTSEEECTTCC
T ss_pred CCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc--cccHhhhhhcccCc
Confidence 57777777554332 6777 6777788888888888765 3226667788888888888766 33444667777 88
Q ss_pred ceEeeccCCceEEE--Ee---CCCcceEEEecccc-c---eeec-------cCCCceEEEEEEEeeccccccCCCCCcch
Q 014150 198 RLTLMNFDGFTHLN--ID---APNLQFFDIGGVFD-D---VTFE-------NTFHLALVSIGLYVNVKNDQAMGPGNSCK 261 (430)
Q Consensus 198 ~L~l~~c~~~~~l~--i~---~p~L~~L~l~~~~~-~---~~~~-------~~p~L~~l~i~~~~~~~~~~~~~~~~~~~ 261 (430)
.|.+.++.-. .+. +. .++|+.|++.++.- . ..+. .+++|+.|+++.+.....
T Consensus 381 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l----------- 448 (636)
T 4eco_A 381 NLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF----------- 448 (636)
T ss_dssp EEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSC-----------
T ss_pred EEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcC-----------
Confidence 8888876421 111 11 13577777765321 1 1122 455677777765432211
Q ss_pred HHHHhccCCCccEEEEeeeeee
Q 014150 262 LLRFFVHLPHIRRLEIQSYFLK 283 (430)
Q Consensus 262 ~~~~l~~~~~L~~L~l~~~~~~ 283 (430)
-..++..+++|++|+++.+.+.
T Consensus 449 p~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 449 PKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp CTHHHHTTCCCSEEECCSSCCS
T ss_pred CHHHHccCCCCCEEECCCCCCC
Confidence 0133455677777777766554
No 61
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.60 E-value=6.9e-08 Score=83.01 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=51.4
Q ss_pred CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 201 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l 201 (430)
..++.+++...... .+| .+..+++|++|++++|.+.....+..+++|++|+|.++.+.+... ..++.+++|+.|.+
T Consensus 44 ~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT--DLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKI-PNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS--CCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGS-CCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc--ChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccC-hhhcCCCCCCEEEe
Confidence 46777777644322 445 456677888888888766665566677888888888777664322 22456777777777
Q ss_pred ecc
Q 014150 202 MNF 204 (430)
Q Consensus 202 ~~c 204 (430)
.++
T Consensus 120 s~n 122 (197)
T 4ezg_A 120 SHS 122 (197)
T ss_dssp CSS
T ss_pred cCC
Confidence 765
No 62
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.60 E-value=2e-08 Score=101.85 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=69.8
Q ss_pred CCceEEEEEecCCCcccCC-CcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150 122 SCVKEFILEIWKGQRYKVP-SSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 198 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~ 198 (430)
++++.|++..+.. ..++ ..+..+++|++|+|++|.+.. +..|.++++|+.|+|+++.+..- ...++..+++|+.
T Consensus 75 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~ 151 (597)
T 3oja_B 75 RQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTT 151 (597)
T ss_dssp CCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCcEEECCCCCC--CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCCCE
Confidence 5677776643322 2233 245567778888888777654 33456778888888887776522 1233566778888
Q ss_pred eEeeccCCceEEE---E-eCCCcceEEEecc-ccceeeccCCCceEEEEEE
Q 014150 199 LTLMNFDGFTHLN---I-DAPNLQFFDIGGV-FDDVTFENTFHLALVSIGL 244 (430)
Q Consensus 199 L~l~~c~~~~~l~---i-~~p~L~~L~l~~~-~~~~~~~~~p~L~~l~i~~ 244 (430)
|.+.++.-. .+. + ..++|+.|.+.++ ...+.+..+++|+.++++.
T Consensus 152 L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 152 LSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY 201 (597)
T ss_dssp EECCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCS
T ss_pred EEeeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhccc
Confidence 888766321 111 1 2367777777653 2333445566677666643
No 63
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.60 E-value=3.2e-08 Score=88.64 Aligned_cols=66 Identities=26% Similarity=0.281 Sum_probs=45.7
Q ss_pred ccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccC
Q 014150 137 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD 205 (430)
Q Consensus 137 ~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~ 205 (430)
..+|..+. ++++.|+|+++.+.. +..+.++++|+.|+|.++.+... ....+..+++|+.|.+.++.
T Consensus 27 ~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 27 DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC
T ss_pred cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCc
Confidence 34555443 578888888887765 34577888888888888876543 23345677888888887653
No 64
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.59 E-value=3.2e-08 Score=96.83 Aligned_cols=199 Identities=14% Similarity=0.066 Sum_probs=137.5
Q ss_pred CceeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcce
Q 014150 94 GPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKS 173 (430)
Q Consensus 94 ~~l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~ 173 (430)
..++.+.+......+.. ...-.+++.|++..+... .++ +..+++|++|++++|.+... .+..+++|+.
T Consensus 64 ~~L~~L~Ls~n~l~~~~-------~~~l~~L~~L~Ls~N~l~--~~~--~~~l~~L~~L~L~~N~l~~l-~~~~l~~L~~ 131 (457)
T 3bz5_A 64 TGLTKLICTSNNITTLD-------LSQNTNLTYLACDSNKLT--NLD--VTPLTKLTYLNCDTNKLTKL-DVSQNPLLTY 131 (457)
T ss_dssp TTCSEEECCSSCCSCCC-------CTTCTTCSEEECCSSCCS--CCC--CTTCTTCCEEECCSSCCSCC-CCTTCTTCCE
T ss_pred CCCCEEEccCCcCCeEc-------cccCCCCCEEECcCCCCc--eee--cCCCCcCCEEECCCCcCCee-cCCCCCcCCE
Confidence 45778888775443321 123367888888654432 233 56789999999999988763 3789999999
Q ss_pred EEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEE-eCCCcceEEEecc-ccceeeccCCCceEEEEEEEeecccc
Q 014150 174 LDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI-DAPNLQFFDIGGV-FDDVTFENTFHLALVSIGLYVNVKND 251 (430)
Q Consensus 174 L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i-~~p~L~~L~l~~~-~~~~~~~~~p~L~~l~i~~~~~~~~~ 251 (430)
|++.++.+.+-. ++.++.|+.|.+.++..+..+.+ ..++|+.|++.++ ...+.+..+++|+.++++.+.....
T Consensus 132 L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~- 206 (457)
T 3bz5_A 132 LNCARNTLTEID----VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL- 206 (457)
T ss_dssp EECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC-
T ss_pred EECCCCccceec----cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCee-
Confidence 999999876532 67899999999998865554433 2478999999864 3344577889999998875433211
Q ss_pred ccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccE
Q 014150 252 QAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQE 331 (430)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~ 331 (430)
-+..+++|+.|+++.+.+..++ + ..+++|+.|+++...... ++ ...+++|+.
T Consensus 207 -------------~l~~l~~L~~L~Ls~N~l~~ip-------~-~~l~~L~~L~l~~N~l~~-----~~--~~~l~~L~~ 258 (457)
T 3bz5_A 207 -------------DLNQNIQLTFLDCSSNKLTEID-------V-TPLTQLTYFDCSVNPLTE-----LD--VSTLSKLTT 258 (457)
T ss_dssp -------------CCTTCTTCSEEECCSSCCSCCC-------C-TTCTTCSEEECCSSCCSC-----CC--CTTCTTCCE
T ss_pred -------------ccccCCCCCEEECcCCcccccC-------c-cccCCCCEEEeeCCcCCC-----cC--HHHCCCCCE
Confidence 1577899999999988765321 1 156789999985443222 11 456788887
Q ss_pred EEEeec
Q 014150 332 LEMLAR 337 (430)
Q Consensus 332 L~l~~~ 337 (430)
|++..+
T Consensus 259 L~l~~n 264 (457)
T 3bz5_A 259 LHCIQT 264 (457)
T ss_dssp EECTTC
T ss_pred EeccCC
Confidence 776554
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.58 E-value=1.2e-08 Score=92.68 Aligned_cols=58 Identities=22% Similarity=0.201 Sum_probs=35.5
Q ss_pred CceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccC
Q 014150 147 QNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD 205 (430)
Q Consensus 147 ~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~ 205 (430)
++|++|+++++.+.. +..+.++++|++|+|.++.+..- ....+..+++|+.|.+.++.
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCc
Confidence 467777777776543 23566677777777777765422 12234566777777777653
No 66
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.56 E-value=1.7e-08 Score=102.55 Aligned_cols=175 Identities=16% Similarity=0.075 Sum_probs=91.3
Q ss_pred ccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhh-HHHHhhcCccccceEeeccCCceEEE---EeCCCcceE
Q 014150 145 LCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDV-FENLISSSPTLERLTLMNFDGFTHLN---IDAPNLQFF 220 (430)
Q Consensus 145 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-l~~l~s~cp~Le~L~l~~c~~~~~l~---i~~p~L~~L 220 (430)
.+++|+.|++++|....+..+..+++|+.|+|+++.+.... +...+..+++|++|.+.++. +..+. ...++|+.|
T Consensus 326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L 404 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHL 404 (606)
T ss_dssp CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEE
T ss_pred CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCee
Confidence 44555555555553222224445666666666666554321 23345567777777777654 22221 023667777
Q ss_pred EEecccc----c-eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCC
Q 014150 221 DIGGVFD----D-VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLP 295 (430)
Q Consensus 221 ~l~~~~~----~-~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 295 (430)
.+.++.- . ..+..+++|+.|+++.+..... ....+.++++|++|+++++.+.... .+..+.
T Consensus 405 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~ 470 (606)
T 3vq2_A 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID-----------FDGIFLGLTSLNTLKMAGNSFKDNT---LSNVFA 470 (606)
T ss_dssp ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC-----------CTTTTTTCTTCCEEECTTCEEGGGE---ECSCCT
T ss_pred ECCCCccCCccChhhhhccccCCEEECcCCCCCcc-----------chhhhcCCCCCCEEECCCCcCCCcc---hHHhhc
Confidence 7765321 1 2345667777777754432211 1123567788888888777654210 111111
Q ss_pred ccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150 296 RPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 339 (430)
Q Consensus 296 ~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 339 (430)
.+++|+.|+++.+..... .+..+..+++|+.|+++++.-
T Consensus 471 -~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 471 -NTTNLTFLDLSKCQLEQI----SWGVFDTLHRLQLLNMSHNNL 509 (606)
T ss_dssp -TCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSCC
T ss_pred -cCCCCCEEECCCCcCCcc----ChhhhcccccCCEEECCCCcC
Confidence 456777777743322110 123456677777777777643
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.56 E-value=5.3e-09 Score=97.29 Aligned_cols=214 Identities=14% Similarity=0.085 Sum_probs=141.5
Q ss_pred ccCceeEEEEeeeeecCC--CCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeCCCcceEEE
Q 014150 145 LCQNLIHLELFNCLLKPP--STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDI 222 (430)
Q Consensus 145 ~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l 222 (430)
.+++|++|+|++|.+... ..+..+++|+.|+|+++.+.+.. . +..+++|+.|.++++. +..+. ..++|+.|.+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~--~~~l~~L~~L~Ls~n~-l~~l~-~~~~L~~L~l 106 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQELL-VGPSIETLHA 106 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-E--ETTCTTCCEEECCSSE-EEEEE-ECTTCCEEEC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-h--hhhcCCCCEEECcCCc-ccccc-CCCCcCEEEC
Confidence 457999999999988763 35779999999999999875432 1 7789999999999874 44443 4589999999
Q ss_pred ecc-ccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCcccccc
Q 014150 223 GGV-FDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDL 301 (430)
Q Consensus 223 ~~~-~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L 301 (430)
.++ ...+....+++|+.|+++.+...... ...+..+++|++|+++.+.+...... .+...+++|
T Consensus 107 ~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~-----------~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~~l~~L 171 (317)
T 3o53_A 107 ANNNISRVSCSRGQGKKNIYLANNKITMLR-----------DLDEGCRSRVQYLDLKLNEIDTVNFA----ELAASSDTL 171 (317)
T ss_dssp CSSCCSEEEECCCSSCEEEECCSSCCCSGG-----------GBCTGGGSSEEEEECTTSCCCEEEGG----GGGGGTTTC
T ss_pred CCCccCCcCccccCCCCEEECCCCCCCCcc-----------chhhhccCCCCEEECCCCCCCcccHH----HHhhccCcC
Confidence 874 33444456889999998765432110 11246789999999998876533221 122245789
Q ss_pred ceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceecccccccccCceEEEEEeeecCccHHHHHH
Q 014150 302 NYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIK 381 (430)
Q Consensus 302 ~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~e~~~~~ 381 (430)
++|+++.+.... +. -...+++|+.|+++++.-.. .... . ..+++|+.+.+.+-.-.. + .
T Consensus 172 ~~L~L~~N~l~~-----~~-~~~~l~~L~~L~Ls~N~l~~--------l~~~-~-~~l~~L~~L~L~~N~l~~----l-~ 230 (317)
T 3o53_A 172 EHLNLQYNFIYD-----VK-GQVVFAKLKTLDLSSNKLAF--------MGPE-F-QSAAGVTWISLRNNKLVL----I-E 230 (317)
T ss_dssp CEEECTTSCCCE-----EE-CCCCCTTCCEEECCSSCCCE--------ECGG-G-GGGTTCSEEECTTSCCCE----E-C
T ss_pred CEEECCCCcCcc-----cc-cccccccCCEEECCCCcCCc--------chhh-h-cccCcccEEECcCCcccc----h-h
Confidence 999985432221 11 12248999999999876431 0000 1 135778888776532211 1 1
Q ss_pred HHHccCCCcceEEEeecC
Q 014150 382 FVLSNSPVLETMTIKPAS 399 (430)
Q Consensus 382 ~il~~~~~L~~l~i~~~~ 399 (430)
..+.+.++|+.+.+..+.
T Consensus 231 ~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 231 KALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp TTCCCCTTCCEEECTTCC
T ss_pred hHhhcCCCCCEEEccCCC
Confidence 125778999999998766
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.56 E-value=5.5e-09 Score=96.95 Aligned_cols=175 Identities=15% Similarity=0.064 Sum_probs=90.2
Q ss_pred ccCceeEEEEeeeeecC--CCCC--CCCCCcceEEeeeEEechh--hHHHHhh-cCccccceEeeccCCceEEE----Ee
Q 014150 145 LCQNLIHLELFNCLLKP--PSTF--KGFRNLKSLDLQHITLSQD--VFENLIS-SSPTLERLTLMNFDGFTHLN----ID 213 (430)
Q Consensus 145 ~~~~L~~L~L~~~~~~~--~~~~--~~~~~L~~L~L~~~~~~~~--~l~~l~s-~cp~Le~L~l~~c~~~~~l~----i~ 213 (430)
.+++|++|+|++|.+.. +..+ ..+++|+.|+|+++.+.+. .+..+.. .+++|++|.+.++.-. .+. -.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhcc
Confidence 35666666776666543 3333 5666677777766665432 1222111 1266777776655321 111 12
Q ss_pred CCCcceEEEeccc-c-------ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehh
Q 014150 214 APNLQFFDIGGVF-D-------DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYL 285 (430)
Q Consensus 214 ~p~L~~L~l~~~~-~-------~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 285 (430)
.++|+.|++.++. . .+.+..+++|+.|+++.+.... .......++.++++|++|+++.+.+...
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~--------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET--------PSGVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC--------HHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc--------hHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 3566666666532 1 1223677888888776543210 0112234556778888888887765432
Q ss_pred hcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150 286 AIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 339 (430)
Q Consensus 286 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 339 (430)
. +......+++|+.|+++.+... .++.-+. ++|+.|+++++.-
T Consensus 244 ~----~~~~~~~l~~L~~L~Ls~N~l~-----~ip~~~~--~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 244 A----GAPSCDWPSQLNSLNLSFTGLK-----QVPKGLP--AKLSVLDLSYNRL 286 (312)
T ss_dssp C----CCSCCCCCTTCCEEECTTSCCS-----SCCSSCC--SEEEEEECCSSCC
T ss_pred c----chhhhhhcCCCCEEECCCCccC-----hhhhhcc--CCceEEECCCCCC
Confidence 1 0011112467888777433211 1211111 6788888887653
No 69
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.56 E-value=5.5e-09 Score=97.81 Aligned_cols=117 Identities=10% Similarity=-0.053 Sum_probs=56.1
Q ss_pred hccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccc
Q 014150 266 FVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGV 345 (430)
Q Consensus 266 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~ 345 (430)
+..+++|++|+++++.+...... .+ ..+++|+.|+++.+... .++.-+..+++|+.|+++++.-....
T Consensus 213 l~~l~~L~~L~L~~N~l~~~~~~----~~-~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~L~~L~l~~N~l~~~~-- 280 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHNQIRMIENG----SL-SFLPTLRELHLDNNKLS-----RVPAGLPDLKLLQVVYLHTNNITKVG-- 280 (332)
T ss_dssp STTCTTCSCCBCCSSCCCCCCTT----GG-GGCTTCCEEECCSSCCC-----BCCTTGGGCTTCCEEECCSSCCCBCC--
T ss_pred hcCCCCCCEEECCCCcCCcCChh----Hh-hCCCCCCEEECCCCcCe-----ecChhhhcCccCCEEECCCCCCCccC--
Confidence 45677777787777655422110 11 14567777777443221 13334567788888888776533100
Q ss_pred cccceecccccccccCceEEEEEeeecCccHHHHHHHHHccCCCcceEEEee
Q 014150 346 LTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKP 397 (430)
Q Consensus 346 ~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~~ 397 (430)
...+...........|+.+.+.+-..... ......+.+.+.|+.+.+..
T Consensus 281 -~~~~~~~~~~~~~~~l~~L~l~~N~~~~~--~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 281 -VNDFCPVGFGVKRAYYNGISLFNNPVPYW--EVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp -TTSSSCSSCCSSSCCBSEEECCSSSSCGG--GSCGGGGTTBCCSTTEEC--
T ss_pred -hhHccccccccccccccceEeecCccccc--ccCcccccccchhhhhhccc
Confidence 00000000111245666666665332111 11122355667777766643
No 70
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.56 E-value=2.3e-08 Score=91.72 Aligned_cols=166 Identities=16% Similarity=0.132 Sum_probs=96.9
Q ss_pred CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 201 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l 201 (430)
..++.+.+..+.. ..++. +..+++|+.|++++|.+.....+..+++|+.|+|.++.+.+- .. +..+++|+.|.+
T Consensus 46 ~~L~~L~l~~~~i--~~~~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDI--KSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCC--CCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEEEC
T ss_pred CcccEEEccCCCc--ccChh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCC--hh-hccCCCCCEEEC
Confidence 4677776654322 23333 566788899999888877644477888899999988887542 22 667888888888
Q ss_pred eccCCceEEEEeCCCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeee
Q 014150 202 MNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYF 281 (430)
Q Consensus 202 ~~c~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 281 (430)
.++.- ..+ ..+..+++|+.|+++.+.... + ..+..+++|++|+++++.
T Consensus 120 ~~n~i-~~~------------------~~l~~l~~L~~L~l~~n~l~~------------~-~~l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 120 EHNGI-SDI------------------NGLVHLPQLESLYLGNNKITD------------I-TVLSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp TTSCC-CCC------------------GGGGGCTTCCEEECCSSCCCC------------C-GGGGGCTTCSEEECCSSC
T ss_pred CCCcC-CCC------------------hhhcCCCCCCEEEccCCcCCc------------c-hhhccCCCCCEEEccCCc
Confidence 87632 111 013345666666665432210 0 224566777777776665
Q ss_pred eehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150 282 LKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 338 (430)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 338 (430)
+..... + ..+++|++|+++.+.... +. -+..+++|+.|++.++.
T Consensus 168 l~~~~~------l-~~l~~L~~L~L~~N~i~~-----l~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 168 ISDIVP------L-AGLTKLQNLYLSKNHISD-----LR-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCCCGG------G-TTCTTCCEEECCSSCCCB-----CG-GGTTCTTCSEEEEEEEE
T ss_pred cccchh------h-cCCCccCEEECCCCcCCC-----Ch-hhccCCCCCEEECcCCc
Confidence 432211 1 135566766664332211 12 25667777777777653
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.55 E-value=1.2e-08 Score=100.68 Aligned_cols=214 Identities=14% Similarity=0.080 Sum_probs=140.3
Q ss_pred ccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeCCCcceEEE
Q 014150 145 LCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDI 222 (430)
Q Consensus 145 ~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l 222 (430)
.+++|+.|+|++|.+.. +..+..+++|+.|+|+++.+.+.. . +..+++|+.|+++++. +..+. ..++|+.|.+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~-l~~l~-~~~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQELL-VGPSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSE-EEEEE-ECTTCCEEEC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCc-CCCCC-CCCCcCEEEC
Confidence 34699999999998876 346889999999999999876432 2 7789999999999874 44443 3489999999
Q ss_pred ecc-ccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCcccccc
Q 014150 223 GGV-FDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDL 301 (430)
Q Consensus 223 ~~~-~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L 301 (430)
.++ ...+....+++|+.|+++.+..... ....+..+++|+.|+++.+.+...... .+...+++|
T Consensus 107 ~~N~l~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~~l~~L 171 (487)
T 3oja_A 107 ANNNISRVSCSRGQGKKNIYLANNKITML-----------RDLDEGCRSRVQYLDLKLNEIDTVNFA----ELAASSDTL 171 (487)
T ss_dssp CSSCCCCEEECCCSSCEEEECCSSCCCSG-----------GGBCGGGGSSEEEEECTTSCCCEEEGG----GGGGGTTTC
T ss_pred cCCcCCCCCccccCCCCEEECCCCCCCCC-----------CchhhcCCCCCCEEECCCCCCCCcChH----HHhhhCCcc
Confidence 874 3344445678999999876543211 112256789999999998876532211 122246789
Q ss_pred ceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceecccccccccCceEEEEEeeecCccHHHHHH
Q 014150 302 NYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIK 381 (430)
Q Consensus 302 ~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~e~~~~~ 381 (430)
+.|+++.+..... + -...+|+|+.|+++++.-.+. .. .. ..+++|+.+.+.+-.-.. +.
T Consensus 172 ~~L~Ls~N~l~~~-----~-~~~~l~~L~~L~Ls~N~l~~~--------~~-~~-~~l~~L~~L~Ls~N~l~~-----lp 230 (487)
T 3oja_A 172 EHLNLQYNFIYDV-----K-GQVVFAKLKTLDLSSNKLAFM--------GP-EF-QSAAGVTWISLRNNKLVL-----IE 230 (487)
T ss_dssp CEEECTTSCCCEE-----E-CCCCCTTCCEEECCSSCCCEE--------CG-GG-GGGTTCSEEECTTSCCCE-----EC
T ss_pred cEEecCCCccccc-----c-ccccCCCCCEEECCCCCCCCC--------CH-hH-cCCCCccEEEecCCcCcc-----cc
Confidence 9999954332211 1 123589999999998764310 00 01 135677777776422111 11
Q ss_pred HHHccCCCcceEEEeecC
Q 014150 382 FVLSNSPVLETMTIKPAS 399 (430)
Q Consensus 382 ~il~~~~~L~~l~i~~~~ 399 (430)
..+.+.++|+.+.+..++
T Consensus 231 ~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 231 KALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp TTCCCCTTCCEEECTTCC
T ss_pred hhhccCCCCCEEEcCCCC
Confidence 124667888888887655
No 72
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.54 E-value=4e-08 Score=91.76 Aligned_cols=177 Identities=13% Similarity=0.027 Sum_probs=76.9
Q ss_pred CCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCce-EEE----EeC
Q 014150 140 PSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFT-HLN----IDA 214 (430)
Q Consensus 140 p~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~-~l~----i~~ 214 (430)
|..+..+++|++|++++|.+..-+. ..+++|++|++.++.+..- ....+..+++|+.|.+.++.-.. .+. -..
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~l~~-~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 170 (330)
T 1xku_A 93 PGAFAPLVKLERLYLSKNQLKELPE-KMPKTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170 (330)
T ss_dssp TTTTTTCTTCCEEECCSSCCSBCCS-SCCTTCCEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC
T ss_pred HHHhcCCCCCCEEECCCCcCCccCh-hhcccccEEECCCCccccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCC
Confidence 3334445555555555554432111 1125555555555544322 12334455666666655442110 000 012
Q ss_pred CCcceEEEeccc-cceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCC
Q 014150 215 PNLQFFDIGGVF-DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSR 293 (430)
Q Consensus 215 p~L~~L~l~~~~-~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 293 (430)
++|+.|.+.++. ..+...-.++|+.|+++.+..... ....+..+++|++|+++.+.+...... .
T Consensus 171 ~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~-----------~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~ 235 (330)
T 1xku_A 171 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKV-----------DAASLKGLNNLAKLGLSFNSISAVDNG----S 235 (330)
T ss_dssp TTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEE-----------CTGGGTTCTTCCEEECCSSCCCEECTT----T
T ss_pred CCcCEEECCCCccccCCccccccCCEEECCCCcCCcc-----------CHHHhcCCCCCCEEECCCCcCceeChh----h
Confidence 455555554421 111111124555555543221100 012245666777777766654321110 1
Q ss_pred CCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150 294 LPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 339 (430)
Q Consensus 294 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 339 (430)
+ ..+++|+.|+++.+... .++..+..+++|+.|++.++.-
T Consensus 236 ~-~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 236 L-ANTPHLRELHLNNNKLV-----KVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp G-GGSTTCCEEECCSSCCS-----SCCTTTTTCSSCCEEECCSSCC
T ss_pred c-cCCCCCCEEECCCCcCc-----cCChhhccCCCcCEEECCCCcC
Confidence 1 13456666666433211 1333355667777777766543
No 73
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.53 E-value=1.2e-07 Score=79.17 Aligned_cols=137 Identities=19% Similarity=0.122 Sum_probs=93.5
Q ss_pred CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 201 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l 201 (430)
++++++++..+......+|..+..+++|+.|++++|.+.....+..+++|+.|+|+++.+.+. +..++..+++|+.|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEec
Confidence 568888876554322367777778899999999999887666677899999999999988654 5666777999999999
Q ss_pred eccCCceEEEEeCCCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeee
Q 014150 202 MNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYF 281 (430)
Q Consensus 202 ~~c~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 281 (430)
.++.- ..+ .....+..+++|+.|+++.+..... .......+..+++|++|++..+.
T Consensus 103 s~N~l-~~~---------------~~~~~l~~l~~L~~L~l~~N~l~~~--------~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 103 SGNKL-KDI---------------STLEPLKKLECLKSLDLFNCEVTNL--------NDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp BSSSC-CSS---------------GGGGGGSSCSCCCEEECCSSGGGTS--------TTHHHHHHTTCSSCCEETTEETT
T ss_pred cCCcc-Ccc---------------hhHHHHhcCCCCCEEEeeCCcCcch--------HHHHHHHHHhCccCcEecCCCCC
Confidence 98742 111 0112345677788887765432211 01112356788888888888765
Q ss_pred ee
Q 014150 282 LK 283 (430)
Q Consensus 282 ~~ 283 (430)
..
T Consensus 159 ~~ 160 (168)
T 2ell_A 159 DQ 160 (168)
T ss_dssp SC
T ss_pred hh
Confidence 43
No 74
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.53 E-value=1.2e-07 Score=100.16 Aligned_cols=119 Identities=16% Similarity=0.076 Sum_probs=62.5
Q ss_pred CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccce
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL 199 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L 199 (430)
.+++.+++...... ...|..+..+++|+.|+|++|.+.. +..|.++++|+.|+|+++.+... ....+..+++|+.|
T Consensus 266 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L 343 (844)
T 3j0a_A 266 SSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL-YSSNFYGLPKVAYI 343 (844)
T ss_dssp SCCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC-CSCSCSSCTTCCEE
T ss_pred CCccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc-CHHHhcCCCCCCEE
Confidence 46667666432211 1123334456777777777776543 34566777777777777765422 12234566777777
Q ss_pred EeeccCCceEEE----EeCCCcceEEEeccccceeeccCCCceEEEEEE
Q 014150 200 TLMNFDGFTHLN----IDAPNLQFFDIGGVFDDVTFENTFHLALVSIGL 244 (430)
Q Consensus 200 ~l~~c~~~~~l~----i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~ 244 (430)
.+.++. +..+. -..++|+.|.+.++.-. .+..+++|+.++++.
T Consensus 344 ~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~L~~L~l~~ 390 (844)
T 3j0a_A 344 DLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALT-TIHFIPSIPDIFLSG 390 (844)
T ss_dssp ECCSCC-CCCCCSSCSCSCCCCCEEEEETCCSC-CCSSCCSCSEEEEES
T ss_pred ECCCCC-CCccChhhhcCCCCCCEEECCCCCCC-cccCCCCcchhccCC
Confidence 776552 11111 11356666666553211 122355555555543
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.53 E-value=4e-08 Score=87.28 Aligned_cols=170 Identities=12% Similarity=0.070 Sum_probs=99.1
Q ss_pred CceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEE-echhhHHHHhhcCccccceEeeccCCceEEE----EeCCCcce
Q 014150 147 QNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTLERLTLMNFDGFTHLN----IDAPNLQF 219 (430)
Q Consensus 147 ~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~----i~~p~L~~ 219 (430)
++|+.|+++++.+.. +..|.++++|++|+|.++. +..- -...+..+++|++|.+.+|..+..+. -..++|+.
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 478888888887654 3357778888888888875 4321 11235678888888888765555443 13467777
Q ss_pred EEEeccc-cce-eeccCCCce---EEEEEEE-eeccccccCCCCCcchHHHHhccCCCcc-EEEEeeeeeehhhcccCCC
Q 014150 220 FDIGGVF-DDV-TFENTFHLA---LVSIGLY-VNVKNDQAMGPGNSCKLLRFFVHLPHIR-RLEIQSYFLKYLAIGNVPS 292 (430)
Q Consensus 220 L~l~~~~-~~~-~~~~~p~L~---~l~i~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~ 292 (430)
|.+.++. ..+ .+..+++|+ .++++.+ ...... ...+.++++|+ +|+++.+.+..+...
T Consensus 110 L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~-----------~~~~~~l~~L~~~L~l~~n~l~~i~~~---- 174 (239)
T 2xwt_C 110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP-----------VNAFQGLCNETLTLKLYNNGFTSVQGY---- 174 (239)
T ss_dssp EEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEEC-----------TTTTTTTBSSEEEEECCSCCCCEECTT----
T ss_pred EeCCCCCCccccccccccccccccEEECCCCcchhhcC-----------cccccchhcceeEEEcCCCCCcccCHh----
Confidence 7777632 111 145566666 7777654 211100 12256788888 888887765432111
Q ss_pred CCCccccccceeEEEEee-CChhhHHHHHHHHhcC-CCccEEEEeecC
Q 014150 293 RLPRPCVDLNYLSIRINF-NDLEENLAALCLLRSS-PNLQELEMLARP 338 (430)
Q Consensus 293 ~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~ll~~~-p~L~~L~l~~~~ 338 (430)
.. ..++|++|++..+. ... + -...+..+ ++|+.|+++.+.
T Consensus 175 -~~-~~~~L~~L~L~~n~~l~~--i--~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 175 -AF-NGTKLDAVYLNKNKYLTV--I--DKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp -TT-TTCEEEEEECTTCTTCCE--E--CTTTTTTCSBCCSEEECTTCC
T ss_pred -hc-CCCCCCEEEcCCCCCccc--C--CHHHhhccccCCcEEECCCCc
Confidence 11 11467777774331 111 0 01245667 888888888764
No 76
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.52 E-value=4e-09 Score=100.02 Aligned_cols=39 Identities=15% Similarity=-0.058 Sum_probs=20.5
Q ss_pred ccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150 300 DLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 338 (430)
Q Consensus 300 ~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 338 (430)
+|++|+++.+.........+..+++.+++|+.|+++++.
T Consensus 226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 566666644433332333444555666666666666654
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.52 E-value=1.5e-08 Score=94.00 Aligned_cols=193 Identities=18% Similarity=0.129 Sum_probs=121.8
Q ss_pred HhCCceEEEEEecCCCcccCCCcc--cccCceeEEEEeeeeecC-CCCCCCC-----CCcceEEeeeEEechhhHHHHhh
Q 014150 120 SRSCVKEFILEIWKGQRYKVPSSL--FLCQNLIHLELFNCLLKP-PSTFKGF-----RNLKSLDLQHITLSQDVFENLIS 191 (430)
Q Consensus 120 ~~~~l~~l~l~~~~~~~~~lp~~~--~~~~~L~~L~L~~~~~~~-~~~~~~~-----~~L~~L~L~~~~~~~~~l~~l~s 191 (430)
.-.++++|++...... ..+|..+ ..+++|++|+|++|.+.. +..+..+ ++|++|+|+++.+... ....+.
T Consensus 93 ~l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~-~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVT-GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCB-SCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC-CTTTCC
T ss_pred CcCCccEEEccCCccc-chhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccc-hHHHhc
Confidence 3468888888765432 2455554 567899999999988765 2223333 8999999999887543 223466
Q ss_pred cCccccceEeeccCCceEE----E---EeCCCcceEEEeccccc-------eeeccCCCceEEEEEEEeeccccccCCCC
Q 014150 192 SSPTLERLTLMNFDGFTHL----N---IDAPNLQFFDIGGVFDD-------VTFENTFHLALVSIGLYVNVKNDQAMGPG 257 (430)
Q Consensus 192 ~cp~Le~L~l~~c~~~~~l----~---i~~p~L~~L~l~~~~~~-------~~~~~~p~L~~l~i~~~~~~~~~~~~~~~ 257 (430)
.+++|++|.++++.-...+ . -..++|+.|.+.++.-. ..+..+++|+.|+++.+......+
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----- 245 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG----- 245 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-----
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-----
Confidence 7899999999987532111 0 23478899988764211 123466889999887554321100
Q ss_pred CcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeec
Q 014150 258 NSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLAR 337 (430)
Q Consensus 258 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 337 (430)
...+..+++|++|+++.+.+.. .+..+ +++|++|+++..... +++. +..+|+|+.|++.++
T Consensus 246 -----~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~---~~~L~~L~Ls~N~l~-----~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 246 -----APSCDWPSQLNSLNLSFTGLKQ-----VPKGL---PAKLSVLDLSYNRLD-----RNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp -----CSCCCCCTTCCEEECTTSCCSS-----CCSSC---CSEEEEEECCSSCCC-----SCCC-TTTSCEEEEEECTTC
T ss_pred -----hhhhhhcCCCCEEECCCCccCh-----hhhhc---cCCceEEECCCCCCC-----CChh-HhhCCCCCEEeccCC
Confidence 0113456889999998876642 11122 258888888544322 1233 677888999988876
Q ss_pred C
Q 014150 338 P 338 (430)
Q Consensus 338 ~ 338 (430)
.
T Consensus 307 ~ 307 (312)
T 1wwl_A 307 P 307 (312)
T ss_dssp T
T ss_pred C
Confidence 5
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.51 E-value=6.3e-08 Score=87.86 Aligned_cols=97 Identities=14% Similarity=0.069 Sum_probs=64.6
Q ss_pred cccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEE----eCCCcce
Q 014150 144 FLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI----DAPNLQF 219 (430)
Q Consensus 144 ~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i----~~p~L~~ 219 (430)
...++|+.|.++++.+....++..+++|+.|+|.++.+.+- . .+..+++|++|.+.++.- ..+.- ..++|+.
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCcc-CccChhHhcCCcCCCE
Confidence 34688999999999888777788999999999999987652 2 467899999999998742 21110 1255666
Q ss_pred EEEeccc-cc---eeeccCCCceEEEEEE
Q 014150 220 FDIGGVF-DD---VTFENTFHLALVSIGL 244 (430)
Q Consensus 220 L~l~~~~-~~---~~~~~~p~L~~l~i~~ 244 (430)
|++.++. .. ..+..+++|+.|+++.
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 142 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAH 142 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCC
Confidence 6555421 11 1134455555555543
No 79
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.51 E-value=5.6e-08 Score=99.24 Aligned_cols=123 Identities=11% Similarity=0.133 Sum_probs=83.9
Q ss_pred CCceEEEEEecCCCcc----------------cCCCccc--ccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEE-
Q 014150 122 SCVKEFILEIWKGQRY----------------KVPSSLF--LCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT- 180 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~----------------~lp~~~~--~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~- 180 (430)
.+++.|++........ .+|..+. .+++|++|+|++|.+.. |..+.++++|+.|+|+++.
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 6889999876543210 1898888 89999999999997654 6678899999999999998
Q ss_pred echhhHHHHh------hcCccccceEeeccCCceEEEE-----eCCCcceEEEecccc--ce-eeccCCCceEEEEEEE
Q 014150 181 LSQDVFENLI------SSSPTLERLTLMNFDGFTHLNI-----DAPNLQFFDIGGVFD--DV-TFENTFHLALVSIGLY 245 (430)
Q Consensus 181 ~~~~~l~~l~------s~cp~Le~L~l~~c~~~~~l~i-----~~p~L~~L~l~~~~~--~~-~~~~~p~L~~l~i~~~ 245 (430)
+++..+..-+ ..+++|++|.+.++.-. .+.- ..++|+.|.+.++.- .+ .+..+++|+.|+++.+
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN 363 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSS
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCC
Confidence 7762233323 34689999999877432 2211 236778887765321 11 4456667777776544
No 80
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.50 E-value=6.9e-08 Score=91.04 Aligned_cols=166 Identities=15% Similarity=0.098 Sum_probs=88.3
Q ss_pred CCCCcceEEeeeEEe--------chhhHHHHhhcCccccceEeeccCCceEEEEeCCCcceEEEecccc------ceeec
Q 014150 167 GFRNLKSLDLQHITL--------SQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFD------DVTFE 232 (430)
Q Consensus 167 ~~~~L~~L~L~~~~~--------~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l~~~~~------~~~~~ 232 (430)
.+|+|+.|.+..+.. +..++..++..+|+|++|.|.++.+..--.+..++|++|.+..+.. .+...
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~ 216 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGS 216 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHc
Confidence 356666666544321 1124678888999999999987743321113468888888864321 11123
Q ss_pred cCCCceEEEEEEEeeccccccCCCCCcchHHHHh--ccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEee
Q 014150 233 NTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFF--VHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINF 310 (430)
Q Consensus 233 ~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 310 (430)
.+|+|+.|++.......... .....+...+ ..+|+|++|.|.++.+...... .....+ .+++|++|+|+.+.
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~----~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~-~la~a~-~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFD----GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE-MFLESD-ILPQLETMDISAGV 290 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCC----SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH-HHHHCS-SGGGCSEEECCSSC
T ss_pred cCCCCcEEEEeccccccccc----hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH-HHHhCc-cCCCCCEEECCCCC
Confidence 67888888775321110000 0011112222 2468888888876543210000 000111 46678888886544
Q ss_pred CChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150 311 NDLEENLAALCLLRSSPNLQELEMLARP 338 (430)
Q Consensus 311 ~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 338 (430)
........+...++++|+|+.|+|+.+.
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 4333333444445667888888887653
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.49 E-value=2.4e-08 Score=91.58 Aligned_cols=64 Identities=25% Similarity=0.186 Sum_probs=28.3
Q ss_pred hccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150 266 FVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 338 (430)
Q Consensus 266 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 338 (430)
+.++++|++|.++++.+..+.. .....+++|+.|+++.+.... + -...+..+++|+.|+++++.
T Consensus 120 ~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~--l--~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 120 LRGLGELQELYLKGNELKTLPP-----GLLTPTPKLEKLSLANNNLTE--L--PAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp TTTCTTCCEEECTTSCCCCCCT-----TTTTTCTTCCEEECTTSCCSC--C--CTTTTTTCTTCCEEECCSSC
T ss_pred HcCCCCCCEEECCCCCCCccCh-----hhcccccCCCEEECCCCcCCc--c--CHHHhcCcCCCCEEECCCCc
Confidence 3455666666666554432111 111134456655553221110 0 01234556666666666554
No 82
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.49 E-value=9.5e-08 Score=79.56 Aligned_cols=96 Identities=8% Similarity=0.162 Sum_probs=70.0
Q ss_pred ccCCCcccccCceeEEEEeeeeecCC--CCCCCCCCcceEEeeeEE-echhhHHHHhhc---CccccceEeeccCCceEE
Q 014150 137 YKVPSSLFLCQNLIHLELFNCLLKPP--STFKGFRNLKSLDLQHIT-LSQDVFENLISS---SPTLERLTLMNFDGFTHL 210 (430)
Q Consensus 137 ~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~-~~~~~l~~l~s~---cp~Le~L~l~~c~~~~~l 210 (430)
..+|......-.|+.|++++|.+.+. ..+.+|++|++|+|.+|. ++|..+..+... |++|++|+|++|..++.
T Consensus 51 ~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD- 129 (176)
T 3e4g_A 51 NHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD- 129 (176)
T ss_dssp GGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH-
T ss_pred ccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH-
Confidence 45666444446799999999986552 234689999999999997 899988888763 78999999999987653
Q ss_pred EEeCCCcceEEEeccccceeeccCCCceEEEEEEEeec
Q 014150 211 NIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNV 248 (430)
Q Consensus 211 ~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~ 248 (430)
.+-..+..+++|+.|++..|...
T Consensus 130 ---------------~Gl~~L~~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 130 ---------------KGIIALHHFRNLKYLFLSDLPGV 152 (176)
T ss_dssp ---------------HHHHHGGGCTTCCEEEEESCTTC
T ss_pred ---------------HHHHHHhcCCCCCEEECCCCCCC
Confidence 11112446777777777766543
No 83
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.47 E-value=2e-07 Score=94.29 Aligned_cols=91 Identities=18% Similarity=0.154 Sum_probs=55.9
Q ss_pred CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 201 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l 201 (430)
.+++.|++..+.. ..+|. .+++|++|+|++|.+..-+. .+++|+.|+|.++.+..- . ...++|+.|.+
T Consensus 61 ~~L~~L~L~~N~l--~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l--~---~~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNL--TSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHL--P---ALPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCC--SCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCC--C---CCCTTCCEEEC
T ss_pred CCCcEEEecCCCC--CCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCC--C---CCCCCcCEEEC
Confidence 5778877765432 24555 45788888888887765222 678888888888765431 1 14566777777
Q ss_pred eccCCceEEEEeCCCcceEEEecc
Q 014150 202 MNFDGFTHLNIDAPNLQFFDIGGV 225 (430)
Q Consensus 202 ~~c~~~~~l~i~~p~L~~L~l~~~ 225 (430)
.++. +..+....++|++|++.++
T Consensus 129 ~~N~-l~~lp~~l~~L~~L~Ls~N 151 (622)
T 3g06_A 129 FGNQ-LTSLPVLPPGLQELSVSDN 151 (622)
T ss_dssp CSSC-CSCCCCCCTTCCEEECCSS
T ss_pred CCCC-CCcCCCCCCCCCEEECcCC
Confidence 7653 2223223466677766653
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.47 E-value=1.2e-08 Score=94.53 Aligned_cols=107 Identities=17% Similarity=0.049 Sum_probs=49.7
Q ss_pred eeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCcccCCCcc--cccCceeEEEEeeeeecCC------CCCCC
Q 014150 96 ILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSL--FLCQNLIHLELFNCLLKPP------STFKG 167 (430)
Q Consensus 96 l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~~~~~lp~~~--~~~~~L~~L~L~~~~~~~~------~~~~~ 167 (430)
++++.+..... ....+...........++++++..+... ...|..+ ..+++|++|+|++|.+... ..+..
T Consensus 66 l~~l~l~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 66 VRRLTVGAAQV-PAQLLVGALRVLAYSRLKELTLEDLKIT-GTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCEEEECSCCC-BHHHHHHHHHHHHHSCCCEEEEESCCCB-SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred eeEEEEeCCcC-CHHHHHHHHHhcccCceeEEEeeCCEec-cchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 45555544322 1223333333333345666666543221 1233333 4456666666666655431 11224
Q ss_pred CCCcceEEeeeEEechhhHHHHhhcCccccceEeeccC
Q 014150 168 FRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD 205 (430)
Q Consensus 168 ~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~ 205 (430)
+++|++|+|.++.+... ....++.+++|++|+++++.
T Consensus 144 ~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAF-SCEQVRAFPALTSLDLSDNP 180 (310)
T ss_dssp CSCCCEEEEECCSSCCC-CTTSCCCCTTCCEEECCSCT
T ss_pred ccCCCEEEeeCCCcchh-hHHHhccCCCCCEEECCCCC
Confidence 56666666666655322 12234455666666666553
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.46 E-value=5.7e-08 Score=88.28 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=75.1
Q ss_pred CCceEEEEEecCCCcccCCC-cccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150 122 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 198 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~ 198 (430)
.+++.+++..... ..++. .+..+++|++|++++|.+.. +..+.++++|++|+|.++.+.... ...+..+++|++
T Consensus 28 ~~l~~L~ls~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCC--CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCE
T ss_pred CCccEEECCCCcc--cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC-hhhhcCCccccE
Confidence 4677777743322 23443 45678999999999987754 346788999999999998865431 234677899999
Q ss_pred eEeeccCCce--EEEE-eCCCcceEEEeccc-c----ceeeccCCCceEEEEEEE
Q 014150 199 LTLMNFDGFT--HLNI-DAPNLQFFDIGGVF-D----DVTFENTFHLALVSIGLY 245 (430)
Q Consensus 199 L~l~~c~~~~--~l~i-~~p~L~~L~l~~~~-~----~~~~~~~p~L~~l~i~~~ 245 (430)
|.+.++.-.. ...+ ..++|+.|.+.+.. . ...+..+++|+.|+++.+
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence 9998764211 0001 23566666665421 1 112445566666666543
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.45 E-value=4.3e-08 Score=99.02 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=67.2
Q ss_pred CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 201 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l 201 (430)
..++.|.+..+.. ..++ .+..+++|+.|+|++|.+.....+..+++|+.|+|.++.+.+- . .+..+++|+.|.|
T Consensus 43 ~~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCC--CCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCC--CCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEEEe
Confidence 4566665543322 2233 3567788888888888776644477888888888888877542 1 3667888888888
Q ss_pred eccCCceEEE--EeCCCcceEEEecccc-c-eeeccCCCceEEEEE
Q 014150 202 MNFDGFTHLN--IDAPNLQFFDIGGVFD-D-VTFENTFHLALVSIG 243 (430)
Q Consensus 202 ~~c~~~~~l~--i~~p~L~~L~l~~~~~-~-~~~~~~p~L~~l~i~ 243 (430)
.++.-. .+. ...++|+.|.+.++.- . ..+..+++|+.|+++
T Consensus 117 s~N~l~-~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 117 EHNGIS-DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE 161 (605)
T ss_dssp TTSCCC-CCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECC
T ss_pred cCCCCC-CCccccCCCccCEEECCCCccCCchhhcccCCCCEEECc
Confidence 876421 110 0124555555544211 1 123344555555554
No 87
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.44 E-value=7.4e-07 Score=88.59 Aligned_cols=104 Identities=19% Similarity=0.212 Sum_probs=53.3
Q ss_pred cCCCcccccCceeEEEEeeeeecCC--CCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEE-eC
Q 014150 138 KVPSSLFLCQNLIHLELFNCLLKPP--STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI-DA 214 (430)
Q Consensus 138 ~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i-~~ 214 (430)
.+|..+. ++|++|+|++|.+... ..+.++++|++|+|+++.+.+. ....+..+++|++|+++++. +..+.. ..
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l 89 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNK-LVKISCHPT 89 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSC-CCEEECCCC
T ss_pred ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCc-eeecCcccc
Confidence 3444333 5666666666655442 2355666666666666655422 12234556666666666543 222211 34
Q ss_pred CCcceEEEeccc-cc----eeeccCCCceEEEEEEE
Q 014150 215 PNLQFFDIGGVF-DD----VTFENTFHLALVSIGLY 245 (430)
Q Consensus 215 p~L~~L~l~~~~-~~----~~~~~~p~L~~l~i~~~ 245 (430)
++|++|++.++. .. ..+.++++|+.|+++.+
T Consensus 90 ~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125 (520)
T ss_dssp CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred CCccEEeccCCccccccchhhhccCCcceEEEecCc
Confidence 566666665432 11 23455666666666543
No 88
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.41 E-value=2.2e-07 Score=84.11 Aligned_cols=177 Identities=20% Similarity=0.171 Sum_probs=104.9
Q ss_pred CCceEEEEEecCCCcccCCC-cccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150 122 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 198 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~ 198 (430)
.++++|++..... ..++. .+..+++|++|+++++.+.. +..|..+++|++|+|.++.+..- ....+..+++|++
T Consensus 37 ~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCSSCC--SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSCCE
T ss_pred CCCCEEECcCCCC--CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCCCE
Confidence 4677777754432 24444 45678999999999998765 23467899999999999887542 1244677899999
Q ss_pred eEeeccCCceEEEEeCCCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEe
Q 014150 199 LTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ 278 (430)
Q Consensus 199 L~l~~c~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 278 (430)
|.+.++.-. .+ ....+..+++|+.|+++.+...... ...+..+++|++|.++
T Consensus 114 L~l~~n~l~-~~----------------~~~~~~~l~~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 114 LRLDRNQLK-SL----------------PPRVFDSLTKLTYLSLGYNELQSLP-----------KGVFDKLTSLKELRLY 165 (270)
T ss_dssp EECCSSCCC-CC----------------CTTTTTTCTTCCEEECCSSCCCCCC-----------TTTTTTCTTCCEEECC
T ss_pred EECCCCccC-ee----------------CHHHhCcCcCCCEEECCCCcCCccC-----------HhHccCCcccceeEec
Confidence 999875321 11 1112345666666666543221110 1124567777777777
Q ss_pred eeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150 279 SYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 338 (430)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 338 (430)
.+.+..+... .+ ..+++|++|+++.+..... -...+..+++|+.|++.+++
T Consensus 166 ~n~l~~~~~~----~~-~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 166 NNQLKRVPEG----AF-DKLTELKTLKLDNNQLKRV----PEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SSCCSCCCTT----TT-TTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSC
T ss_pred CCcCcEeChh----Hh-ccCCCcCEEECCCCcCCcC----CHHHhccccCCCEEEecCCC
Confidence 6655422111 11 1355777777743321110 11235667788888887765
No 89
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.41 E-value=5.9e-08 Score=99.94 Aligned_cols=222 Identities=15% Similarity=0.073 Sum_probs=112.2
Q ss_pred ceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE----EeCCCcceEE
Q 014150 148 NLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN----IDAPNLQFFD 221 (430)
Q Consensus 148 ~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~----i~~p~L~~L~ 221 (430)
+|+.|++++|.+.. +..+..+++|+.|+|.++.+.+......+.++++|++|.+.++.- ..+. ...|+|+.|.
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY-LQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSE-EECCTTTTTTCTTCCEEE
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCc-ceeChhhhhcCcccccch
Confidence 34444444444332 334556677777777776654321223355677777777776541 1110 0246777777
Q ss_pred Eecccc------ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCC--
Q 014150 222 IGGVFD------DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSR-- 293 (430)
Q Consensus 222 l~~~~~------~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-- 293 (430)
+.+..- ...+..+++|+.|+++.+...... ...+.++++|+.|+++++.+..+.....+..
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~-----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 529 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN-----------DDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCC-----------TTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCC
T ss_pred hccccccccccCCcccccCCCCCEEECCCCCCCcCC-----------hhhhccccccCEEeCCCCCccccchhhccCCcc
Confidence 765321 123456777777777654322110 1235677888888888776654322211110
Q ss_pred -CCccccccceeEEEEeeCChhhHHHHH-HHHhcCCCccEEEEeecCCCCcccccccceecccccccccCceEEEEEeee
Q 014150 294 -LPRPCVDLNYLSIRINFNDLEENLAAL-CLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGIS 371 (430)
Q Consensus 294 -~~~~~~~L~~L~l~~~~~~~~~~~~l~-~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~ 371 (430)
....+++|+.|+++.+... .++ ..+..+++|+.|+++++.-... ....-..+.+|+.+.+.+-.
T Consensus 530 ~~~~~l~~L~~L~L~~N~l~-----~i~~~~~~~l~~L~~L~Ls~N~l~~l---------~~~~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 530 YFLKGLSHLHILNLESNGFD-----EIPVEVFKDLFELKIIDLGLNNLNTL---------PASVFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSSCCCCC---------CTTTTTTCTTCCEEECTTSC
T ss_pred hhhcCCCCCCEEECCCCCCC-----CCCHHHcccccCcceeECCCCCCCcC---------CHhHhCCCCCCCEEECCCCc
Confidence 1124567777777433211 111 2467788888888876543210 00001134677777766432
Q ss_pred cCccHHHHHHHHHc-cCCCcceEEEeecC
Q 014150 372 GIRSELEFIKFVLS-NSPVLETMTIKPAS 399 (430)
Q Consensus 372 ~~~~e~~~~~~il~-~~~~L~~l~i~~~~ 399 (430)
-..-... .+. ..++|+.+.+..++
T Consensus 596 l~~~~~~----~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 596 ITSVEKK----VFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp CCBCCHH----HHHHHHTTCSEEECTTCC
T ss_pred CCccChh----HhcccccccCEEEccCCC
Confidence 1111111 112 34678888887544
No 90
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.38 E-value=7.9e-07 Score=88.41 Aligned_cols=57 Identities=14% Similarity=0.044 Sum_probs=32.8
Q ss_pred CceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150 147 QNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 204 (430)
Q Consensus 147 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c 204 (430)
.+|+.|+++++.+.....+..+++|++|+|+++.+.+. +...+..+++|+.|.+.++
T Consensus 302 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N 358 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT-VFENCGHLTELETLILQMN 358 (520)
T ss_dssp CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT-TTTTCCCCSSCCEEECCSS
T ss_pred CceeEEEcCCCccccccchhhCCcccEEEeECCccChh-hhhhhccCCCCCEEEccCC
Confidence 45666777666654422224666677777766665542 1223455666666666655
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.37 E-value=4.2e-07 Score=83.21 Aligned_cols=176 Identities=18% Similarity=0.093 Sum_probs=113.9
Q ss_pred ccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE---
Q 014150 137 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN--- 211 (430)
Q Consensus 137 ~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~--- 211 (430)
..+|..+. ++++.|+|++|.+.. +..+..+++|+.|+|.++.++.-.. ...+++|+.|.++++.- ..+.
T Consensus 23 ~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l-~~l~~~~ 96 (290)
T 1p9a_G 23 TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQL-QSLPLLG 96 (290)
T ss_dssp SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCC-SSCCCCT
T ss_pred CcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcC-CcCchhh
Confidence 35665543 688999999987754 3467789999999999988654211 15789999999987632 2221
Q ss_pred EeCCCcceEEEeccc-cc---eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhc
Q 014150 212 IDAPNLQFFDIGGVF-DD---VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAI 287 (430)
Q Consensus 212 i~~p~L~~L~l~~~~-~~---~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 287 (430)
-..++|+.|.+.++. .. -.+..+++|+.|+++.+..... ....+..+++|+.|+++.+.+..+..
T Consensus 97 ~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~l~~ 165 (290)
T 1p9a_G 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-----------PPGLLTPTPKLEKLSLANNNLTELPA 165 (290)
T ss_dssp TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-----------CTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-----------ChhhcccccCCCEEECCCCcCCccCH
Confidence 124788888887642 22 2356788999998875432211 01235678999999999887653221
Q ss_pred ccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150 288 GNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 339 (430)
Q Consensus 288 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 339 (430)
.....+++|++|+++..... .++.-+...++|+.|.+.+++-
T Consensus 166 -----~~~~~l~~L~~L~L~~N~l~-----~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 166 -----GLLNGLENLDTLLLQENSLY-----TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp -----TTTTTCTTCCEEECCSSCCC-----CCCTTTTTTCCCSEEECCSCCB
T ss_pred -----HHhcCcCCCCEEECCCCcCC-----ccChhhcccccCCeEEeCCCCc
Confidence 11124678888888543221 2333345567899998888763
No 92
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.35 E-value=2.4e-07 Score=83.59 Aligned_cols=141 Identities=16% Similarity=0.111 Sum_probs=72.6
Q ss_pred cccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEE-EEeCCCcceEEE
Q 014150 144 FLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHL-NIDAPNLQFFDI 222 (430)
Q Consensus 144 ~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l-~i~~p~L~~L~l 222 (430)
..+++|+.|++++|.+....++..+++|+.|+|+++.+.+-.- +..++.|+.|.+.++.-. .+ .+..++|+.|.+
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~-~l~~~~~~~L~~L~L 113 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLK-NLNGIPSACLSRLFL 113 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCS-CCTTCCCSSCCEEEC
T ss_pred hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccC-CcCccccCcccEEEc
Confidence 3456666777766666554455566777777776666543211 556667777776655311 10 011155555555
Q ss_pred eccc-cc-eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccc
Q 014150 223 GGVF-DD-VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVD 300 (430)
Q Consensus 223 ~~~~-~~-~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 300 (430)
.++. .. -.+..+++|+.|+++.+...+. ..+..+++|+.|+++++.+... . .+. .+++
T Consensus 114 ~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-------------~~l~~l~~L~~L~L~~N~i~~~---~---~l~-~l~~ 173 (263)
T 1xeu_A 114 DNNELRDTDSLIHLKNLEILSIRNNKLKSI-------------VMLGFLSKLEVLDLHGNEITNT---G---GLT-RLKK 173 (263)
T ss_dssp CSSCCSBSGGGTTCTTCCEEECTTSCCCBC-------------GGGGGCTTCCEEECTTSCCCBC---T---TST-TCCC
T ss_pred cCCccCCChhhcCcccccEEECCCCcCCCC-------------hHHccCCCCCEEECCCCcCcch---H---Hhc-cCCC
Confidence 5421 11 1244566666666654322110 1245666777777766655422 0 111 3556
Q ss_pred cceeEEEE
Q 014150 301 LNYLSIRI 308 (430)
Q Consensus 301 L~~L~l~~ 308 (430)
|+.|+++.
T Consensus 174 L~~L~l~~ 181 (263)
T 1xeu_A 174 VNWIDLTG 181 (263)
T ss_dssp CCEEEEEE
T ss_pred CCEEeCCC
Confidence 66666643
No 93
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.35 E-value=1.2e-07 Score=97.68 Aligned_cols=122 Identities=18% Similarity=0.091 Sum_probs=71.5
Q ss_pred CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC---CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP---PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 198 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~ 198 (430)
..++.+++..+... ...|..+..+++|+.|++++|.+.. +..+.++++|+.|+|.++.+..-. ...+..+|.|+.
T Consensus 381 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~~L~~ 458 (680)
T 1ziw_A 381 SPLHILNLTKNKIS-KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT-RNSFALVPSLQR 458 (680)
T ss_dssp SCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC-TTTTTTCTTCCE
T ss_pred CcCceEECCCCCCC-eEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC-hhhhhcCccccc
Confidence 46777766433221 1234455667888888888887642 245678888888888888754321 223456788888
Q ss_pred eEeeccCCc--eEE---EEeCCCcceEEEeccc-c---ceeeccCCCceEEEEEEE
Q 014150 199 LTLMNFDGF--THL---NIDAPNLQFFDIGGVF-D---DVTFENTFHLALVSIGLY 245 (430)
Q Consensus 199 L~l~~c~~~--~~l---~i~~p~L~~L~l~~~~-~---~~~~~~~p~L~~l~i~~~ 245 (430)
|.+.++... ..+ --..++|+.|++.++. . ...+..+++|+.|+++.+
T Consensus 459 L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N 514 (680)
T 1ziw_A 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514 (680)
T ss_dssp EECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred chhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCC
Confidence 888765311 000 0123567777776532 1 112456677777777654
No 94
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.33 E-value=2.1e-07 Score=76.00 Aligned_cols=83 Identities=25% Similarity=0.265 Sum_probs=58.3
Q ss_pred CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 201 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l 201 (430)
.+++++++..+......+|..+..+++|+.|++++|.+.....+..+++|+.|+|+++.+.+. +...+..+++|+.|.+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEEC
Confidence 456666665443221256666677788888888888776655667788888888888887654 4556667888888888
Q ss_pred eccC
Q 014150 202 MNFD 205 (430)
Q Consensus 202 ~~c~ 205 (430)
.++.
T Consensus 96 s~N~ 99 (149)
T 2je0_A 96 SGNK 99 (149)
T ss_dssp TTSC
T ss_pred CCCc
Confidence 8764
No 95
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.31 E-value=1.8e-06 Score=86.79 Aligned_cols=104 Identities=17% Similarity=0.159 Sum_probs=57.7
Q ss_pred cCCCcccccCceeEEEEeeeeecCC--CCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEE-eC
Q 014150 138 KVPSSLFLCQNLIHLELFNCLLKPP--STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI-DA 214 (430)
Q Consensus 138 ~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i-~~ 214 (430)
.+|..+. ++|+.|+|++|.+... ..+.++++|++|+|+++.+..- ....+..+++|++|+++++. +..+.- ..
T Consensus 45 ~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l 120 (562)
T 3a79_B 45 HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNR-LQNISCCPM 120 (562)
T ss_dssp SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSC-CCEECSCCC
T ss_pred cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCc-CCccCcccc
Confidence 3554332 5677777777666542 3466677777777777665432 12334556777777776653 221110 34
Q ss_pred CCcceEEEeccc-cc----eeeccCCCceEEEEEEE
Q 014150 215 PNLQFFDIGGVF-DD----VTFENTFHLALVSIGLY 245 (430)
Q Consensus 215 p~L~~L~l~~~~-~~----~~~~~~p~L~~l~i~~~ 245 (430)
++|++|++.++. .. ..+.++++|+.|+++..
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS
T ss_pred ccCCEEECCCCCccccCchHhhcccCcccEEecCCC
Confidence 666777666532 11 23556677777777653
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.29 E-value=3e-07 Score=79.62 Aligned_cols=156 Identities=17% Similarity=0.142 Sum_probs=93.6
Q ss_pred ccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeC
Q 014150 137 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDA 214 (430)
Q Consensus 137 ~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~ 214 (430)
..+|..+ .++|++|+++++.+.. +..+..+++|++|+|.++.+..- ....+..+++|+.|.+.++.- ..
T Consensus 20 ~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l-~~----- 90 (208)
T 2o6s_A 20 TSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQL-QS----- 90 (208)
T ss_dssp SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CC-----
T ss_pred cCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcC-Cc-----
Confidence 3455443 3588999999987765 23467889999999998876532 233456788888888887632 11
Q ss_pred CCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCC
Q 014150 215 PNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRL 294 (430)
Q Consensus 215 p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 294 (430)
.....+..+++|+.|+++.+...... ...+..+++|++|+++.+.+..+.. ..
T Consensus 91 -----------~~~~~~~~l~~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~l~~N~l~~~~~-----~~ 143 (208)
T 2o6s_A 91 -----------LPNGVFDKLTQLKELALNTNQLQSLP-----------DGVFDKLTQLKDLRLYQNQLKSVPD-----GV 143 (208)
T ss_dssp -----------CCTTTTTTCTTCCEEECCSSCCCCCC-----------TTTTTTCTTCCEEECCSSCCSCCCT-----TT
T ss_pred -----------cCHhHhcCccCCCEEEcCCCcCcccC-----------HhHhccCCcCCEEECCCCccceeCH-----HH
Confidence 11112456677777777544321110 1225677888888888776542211 11
Q ss_pred CccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150 295 PRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 339 (430)
Q Consensus 295 ~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 339 (430)
...+++|++|++.... +...||+|+.|.+..+..
T Consensus 144 ~~~l~~L~~L~l~~N~-----------~~~~~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 144 FDRLTSLQYIWLHDNP-----------WDCTCPGIRYLSEWINKH 177 (208)
T ss_dssp TTTCTTCCEEECCSCC-----------BCCCTTTTHHHHHHHHHC
T ss_pred hccCCCccEEEecCCC-----------eecCCCCHHHHHHHHHhC
Confidence 1245678877774321 224567777777766543
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.28 E-value=1.2e-06 Score=80.21 Aligned_cols=98 Identities=30% Similarity=0.235 Sum_probs=71.2
Q ss_pred eeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEE
Q 014150 96 ILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLD 175 (430)
Q Consensus 96 l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~ 175 (430)
++.+.+..........+ ....+++.|++..+.. ..++. +..+++|+.|++++|.+.....+..+++|+.|+
T Consensus 48 L~~L~l~~~~i~~~~~~------~~l~~L~~L~L~~n~l--~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 48 IDQIIANNSDIKSVQGI------QYLPNVTKLFLNGNKL--TDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLS 118 (291)
T ss_dssp CCEEECTTSCCCCCTTG------GGCTTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEE
T ss_pred ccEEEccCCCcccChhH------hcCCCCCEEEccCCcc--CCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEE
Confidence 66777766543332221 2236889888865433 23444 677899999999999988766688999999999
Q ss_pred eeeEEechhhHHHHhhcCccccceEeeccC
Q 014150 176 LQHITLSQDVFENLISSSPTLERLTLMNFD 205 (430)
Q Consensus 176 L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~ 205 (430)
|.++.+.+- .-+..+++|+.|.+.++.
T Consensus 119 L~~n~i~~~---~~l~~l~~L~~L~l~~n~ 145 (291)
T 1h6t_A 119 LEHNGISDI---NGLVHLPQLESLYLGNNK 145 (291)
T ss_dssp CTTSCCCCC---GGGGGCTTCCEEECCSSC
T ss_pred CCCCcCCCC---hhhcCCCCCCEEEccCCc
Confidence 999987653 236679999999999874
No 98
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.25 E-value=7e-07 Score=79.14 Aligned_cols=188 Identities=10% Similarity=0.062 Sum_probs=98.6
Q ss_pred CCceEEEEEecCCCcccCCC-cccccCceeEEEEeeee-ecC--CCCCCCCCCcceEEeee-EEechhhHHHHhhcCccc
Q 014150 122 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCL-LKP--PSTFKGFRNLKSLDLQH-ITLSQDVFENLISSSPTL 196 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~-~~~--~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~s~cp~L 196 (430)
.+++.+++..... ..+|. .+..+++|++|++++|. +.. +..|.++++|++|+|.+ +.+..- -...+..+++|
T Consensus 31 ~~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELPLL 107 (239)
T ss_dssp TTCCEEEEESCCC--SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCTTC
T ss_pred CcccEEEEeCCcc--eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCCC
Confidence 3566666654332 23333 34456777777777774 432 33566777777777776 444321 12234567777
Q ss_pred cceEeeccCCceEEE--EeCCCcc---eEEEecc-c-cc---eeeccCCCce-EEEEEEEeeccccccCCCCCcchHHHH
Q 014150 197 ERLTLMNFDGFTHLN--IDAPNLQ---FFDIGGV-F-DD---VTFENTFHLA-LVSIGLYVNVKNDQAMGPGNSCKLLRF 265 (430)
Q Consensus 197 e~L~l~~c~~~~~l~--i~~p~L~---~L~l~~~-~-~~---~~~~~~p~L~-~l~i~~~~~~~~~~~~~~~~~~~~~~~ 265 (430)
+.|.+.++.-. .+. -..++|+ .|++.+. . .. ..+.++++|+ .++++........ ...
T Consensus 108 ~~L~l~~n~l~-~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~-----------~~~ 175 (239)
T 2xwt_C 108 KFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ-----------GYA 175 (239)
T ss_dssp CEEEEEEECCC-SCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC-----------TTT
T ss_pred CEEeCCCCCCc-cccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC-----------Hhh
Confidence 77777765311 111 0123444 6666654 1 11 2355678888 8877644321110 011
Q ss_pred hccCCCccEEEEeeee-eehhhcccCCCCCCccc-cccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeec
Q 014150 266 FVHLPHIRRLEIQSYF-LKYLAIGNVPSRLPRPC-VDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLAR 337 (430)
Q Consensus 266 l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 337 (430)
+.. ++|+.|+++++. +..+... .+. .+ ++|+.|+++...... ++. ..+++|+.|.+..+
T Consensus 176 ~~~-~~L~~L~L~~n~~l~~i~~~----~~~-~l~~~L~~L~l~~N~l~~-----l~~--~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 176 FNG-TKLDAVYLNKNKYLTVIDKD----AFG-GVYSGPSLLDVSQTSVTA-----LPS--KGLEHLKELIARNT 236 (239)
T ss_dssp TTT-CEEEEEECTTCTTCCEECTT----TTT-TCSBCCSEEECTTCCCCC-----CCC--TTCTTCSEEECTTC
T ss_pred cCC-CCCCEEEcCCCCCcccCCHH----Hhh-ccccCCcEEECCCCcccc-----CCh--hHhccCceeeccCc
Confidence 233 688888888773 4422111 111 34 678888874322111 111 25788888887764
No 99
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.23 E-value=9.7e-07 Score=89.30 Aligned_cols=59 Identities=19% Similarity=0.080 Sum_probs=36.1
Q ss_pred ccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150 267 VHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 339 (430)
Q Consensus 267 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 339 (430)
..+++|+.|+++++.+. .+|..+++|+.|+++.+... .++..+.++|+|+.|+|.+++-
T Consensus 238 ~~l~~L~~L~Ls~N~L~---------~lp~~~~~L~~L~Ls~N~L~-----~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 238 VLPSELKELMVSGNRLT---------SLPMLPSGLLSLSVYRNQLT-----RLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCCTTCCEEECCSSCCS---------CCCCCCTTCCEEECCSSCCC-----SCCGGGGGSCTTCEEECCSCCC
T ss_pred CCCCcCcEEECCCCCCC---------cCCcccccCcEEeCCCCCCC-----cCCHHHhhccccCEEEecCCCC
Confidence 34567777777766543 12224567887777543222 2344567788888888887754
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.21 E-value=1.1e-06 Score=78.63 Aligned_cols=151 Identities=13% Similarity=0.080 Sum_probs=93.3
Q ss_pred CCceEEEEEecCCCcccCC-CcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150 122 SCVKEFILEIWKGQRYKVP-SSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 198 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~ 198 (430)
..++.|++..... ..++ ..+..+++|++|+|++|.+.. +..+..+++|+.|+|.++.+..- ....+..+++|+.
T Consensus 35 ~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 111 (251)
T 3m19_A 35 ADTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLTQLDK 111 (251)
T ss_dssp TTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccCCCCE
Confidence 4677777654322 2333 345678999999999998865 34478899999999999987633 2344677899999
Q ss_pred eEeeccCCceEEEEeCCCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEe
Q 014150 199 LTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ 278 (430)
Q Consensus 199 L~l~~c~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 278 (430)
|.+.++. +.. .....+..+++|+.|+++.+...... ...+..+++|++|+|+
T Consensus 112 L~L~~N~-l~~----------------~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 112 LYLGGNQ-LKS----------------LPSGVFDRLTKLKELRLNTNQLQSIP-----------AGAFDKLTNLQTLSLS 163 (251)
T ss_dssp EECCSSC-CCC----------------CCTTTTTTCTTCCEEECCSSCCCCCC-----------TTTTTTCTTCCEEECC
T ss_pred EEcCCCc-CCC----------------cChhHhccCCcccEEECcCCcCCccC-----------HHHcCcCcCCCEEECC
Confidence 9998763 211 11112345677777777544321110 1225677888888888
Q ss_pred eeeeehhhcccCCCCCCccccccceeEEEE
Q 014150 279 SYFLKYLAIGNVPSRLPRPCVDLNYLSIRI 308 (430)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 308 (430)
.+.+..+.. .....+++|+.|++..
T Consensus 164 ~N~l~~~~~-----~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 164 TNQLQSVPH-----GAFDRLGKLQTITLFG 188 (251)
T ss_dssp SSCCSCCCT-----TTTTTCTTCCEEECCS
T ss_pred CCcCCccCH-----HHHhCCCCCCEEEeeC
Confidence 776542211 1111456777777743
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.21 E-value=1.9e-06 Score=75.36 Aligned_cols=155 Identities=19% Similarity=0.236 Sum_probs=93.0
Q ss_pred ccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeC
Q 014150 137 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDA 214 (430)
Q Consensus 137 ~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~ 214 (430)
..+|..+. ++|+.|+|+++.+.. +..|..+++|+.|+|.++.+..- ....+.++++|+.|.|.++.- ..
T Consensus 24 ~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l-~~----- 94 (220)
T 2v9t_B 24 TEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKI-TE----- 94 (220)
T ss_dssp SSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCC-CC-----
T ss_pred CcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcC-Cc-----
Confidence 44665443 689999999987754 34677899999999999876532 133466788888888887532 11
Q ss_pred CCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCC
Q 014150 215 PNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRL 294 (430)
Q Consensus 215 p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 294 (430)
.....+..+++|+.|+++.+...... ...+..+++|+.|+|+++.+..+... .
T Consensus 95 -----------l~~~~f~~l~~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~~~~~~-----~ 147 (220)
T 2v9t_B 95 -----------LPKSLFEGLFSLQLLLLNANKINCLR-----------VDAFQDLHNLNLLSLYDNKLQTIAKG-----T 147 (220)
T ss_dssp -----------CCTTTTTTCTTCCEEECCSSCCCCCC-----------TTTTTTCTTCCEEECCSSCCSCCCTT-----T
T ss_pred -----------cCHhHccCCCCCCEEECCCCCCCEeC-----------HHHcCCCCCCCEEECCCCcCCEECHH-----H
Confidence 11223456777777777654322110 12356788899999988776533211 1
Q ss_pred CccccccceeEEEEe-eCChhhHHHHHHHHhcCC
Q 014150 295 PRPCVDLNYLSIRIN-FNDLEENLAALCLLRSSP 327 (430)
Q Consensus 295 ~~~~~~L~~L~l~~~-~~~~~~~~~l~~ll~~~p 327 (430)
...+++|+.|++... +.-.-.+.++...++..+
T Consensus 148 ~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~~ 181 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNP 181 (220)
T ss_dssp TTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCC
T ss_pred HhCCCCCCEEEeCCCCcCCCCccHHHHHHHHhCC
Confidence 114567888888322 111123445655555443
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.20 E-value=7.7e-07 Score=83.79 Aligned_cols=181 Identities=18% Similarity=0.221 Sum_probs=97.2
Q ss_pred ccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE---
Q 014150 137 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN--- 211 (430)
Q Consensus 137 ~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~--- 211 (430)
.++|..+ .+++++|+|++|.+.. +..|.++++|++|+|+++.+....-...+.++++|+++.+.++..+..+.
T Consensus 22 t~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 22 TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp CSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred CccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence 3566554 2578888888887764 34577888888888888865322112345677777777766666555442
Q ss_pred -EeCCCcceEEEeccc----cceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccC-CCccEEEEeeeeeehh
Q 014150 212 -IDAPNLQFFDIGGVF----DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHL-PHIRRLEIQSYFLKYL 285 (430)
Q Consensus 212 -i~~p~L~~L~l~~~~----~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~ 285 (430)
-..++|+.|.+.+.. ....+....++..+++.......... ...+..+ ..++.|.++.+.+..+
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~----------~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE----------RNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC----------TTSSTTSBSSCEEEECCSSCCCEE
T ss_pred hhhccccccccccccccccCCchhhcccchhhhhhhcccccccccc----------ccchhhcchhhhhhccccccccCC
Confidence 124778888887632 11222344455555554322111000 0112233 4677888887765532
Q ss_pred hcccCCCCCCccccccceeEEEEeeCChhhHHHHH-HHHhcCCCccEEEEeecCC
Q 014150 286 AIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAAL-CLLRSSPNLQELEMLARPE 339 (430)
Q Consensus 286 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~ll~~~p~L~~L~l~~~~~ 339 (430)
... .. ...+|+.|.+... ..+..++ ..++.+++|+.|+++.+.-
T Consensus 170 ~~~-----~f-~~~~L~~l~l~~~----n~l~~i~~~~f~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 170 HNS-----AF-NGTQLDELNLSDN----NNLEELPNDVFHGASGPVILDISRTRI 214 (350)
T ss_dssp CTT-----SS-TTEEEEEEECTTC----TTCCCCCTTTTTTEECCSEEECTTSCC
T ss_pred Chh-----hc-cccchhHHhhccC----CcccCCCHHHhccCcccchhhcCCCCc
Confidence 211 00 1234554444211 1111121 2457778888888877643
No 103
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.20 E-value=3.1e-08 Score=94.06 Aligned_cols=170 Identities=15% Similarity=0.113 Sum_probs=88.3
Q ss_pred CceeEEEEeeeeecCC--CCC-----CCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeCCCcce
Q 014150 147 QNLIHLELFNCLLKPP--STF-----KGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQF 219 (430)
Q Consensus 147 ~~L~~L~L~~~~~~~~--~~~-----~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~ 219 (430)
++|+.|+|++|.+.+. ..+ ...++|++|+|+++.+++..+..+...+++|++|+|++|.-.. .
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~-~--------- 141 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGP-E--------- 141 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCH-H---------
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCH-H---------
Confidence 4555666665554321 000 1235666666666666555555555555566666666552110 0
Q ss_pred EEEeccccce--ee-ccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCc
Q 014150 220 FDIGGVFDDV--TF-ENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPR 296 (430)
Q Consensus 220 L~l~~~~~~~--~~-~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 296 (430)
+ ...+ .+ ...++|+.|+++.+...+. ....+...+...++|++|+|+.+.+...........+.
T Consensus 142 ----~-~~~L~~~L~~~~~~L~~L~Ls~n~l~~~-------~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~- 208 (372)
T 3un9_A 142 ----A-CKDLRDLLLHDQCQITTLRLSNNPLTAA-------GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD- 208 (372)
T ss_dssp ----H-HHHHHHHHHSTTCCCCEEECCSSCCHHH-------HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG-
T ss_pred ----H-HHHHHHHHHhcCCccceeeCCCCCCChH-------HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh-
Confidence 0 0000 01 1234555555544321100 11233455667788888888877654321100000011
Q ss_pred cccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150 297 PCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 339 (430)
Q Consensus 297 ~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 339 (430)
..++|+.|+++.+..+......+...++.+|+|++|+|.++.-
T Consensus 209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 2347888888666555555556777788899999999988764
No 104
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.19 E-value=2.5e-06 Score=85.73 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=23.2
Q ss_pred ceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeec
Q 014150 148 NLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMN 203 (430)
Q Consensus 148 ~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~ 203 (430)
+|+.|+++++.+........+++|+.|+|.++.+.+. ....+..+++|+.|.+.+
T Consensus 332 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~ 386 (562)
T 3a79_B 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQR 386 (562)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT-TTTTCCSCSSCCEEECCS
T ss_pred cceEEEccCCCcccccCccCCCCceEEECCCCccccc-hhhhhcccCCCCEEECCC
Confidence 4455555544443221113444555555555444331 112233444555555444
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.18 E-value=4.5e-06 Score=73.39 Aligned_cols=134 Identities=21% Similarity=0.164 Sum_probs=85.4
Q ss_pred ccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeC
Q 014150 137 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDA 214 (430)
Q Consensus 137 ~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~ 214 (430)
..+|..+. ++|+.|+|++|.+.. +..+..+++|+.|+|.++.+..- ....+..+++|+.|+++++. +..
T Consensus 32 ~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~-l~~----- 102 (229)
T 3e6j_A 32 ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQ-LTV----- 102 (229)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCC-----
T ss_pred CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCc-CCc-----
Confidence 45665443 789999999998765 45577899999999999887432 12345678889999888763 211
Q ss_pred CCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCC
Q 014150 215 PNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRL 294 (430)
Q Consensus 215 p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 294 (430)
.....+..+++|+.|+++.+..... ...+..+++|++|+|+++.+..+.. ..
T Consensus 103 -----------l~~~~~~~l~~L~~L~Ls~N~l~~l------------p~~~~~l~~L~~L~L~~N~l~~~~~-----~~ 154 (229)
T 3e6j_A 103 -----------LPSAVFDRLVHLKELFMCCNKLTEL------------PRGIERLTHLTHLALDQNQLKSIPH-----GA 154 (229)
T ss_dssp -----------CCTTTTTTCTTCCEEECCSSCCCSC------------CTTGGGCTTCSEEECCSSCCCCCCT-----TT
T ss_pred -----------cChhHhCcchhhCeEeccCCccccc------------CcccccCCCCCEEECCCCcCCccCH-----HH
Confidence 1112244667777777764432211 1124678889999988876653221 11
Q ss_pred CccccccceeEEE
Q 014150 295 PRPCVDLNYLSIR 307 (430)
Q Consensus 295 ~~~~~~L~~L~l~ 307 (430)
...+++|+.|++.
T Consensus 155 ~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 155 FDRLSSLTHAYLF 167 (229)
T ss_dssp TTTCTTCCEEECT
T ss_pred HhCCCCCCEEEee
Confidence 1245678887773
No 106
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.17 E-value=8.2e-07 Score=74.01 Aligned_cols=71 Identities=15% Similarity=0.075 Sum_probs=41.2
Q ss_pred HhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCC
Q 014150 265 FFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEE 340 (430)
Q Consensus 265 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~ 340 (430)
.+..+++|++|+++.+.+..+...... . .+++|++|+++.+...... ......+..+|+|+.|++..+...
T Consensus 90 ~~~~l~~L~~L~Ls~N~l~~~~~~~~l---~-~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNKLKDISTLEPL---K-KLECLKSLDLFNCEVTNLN-DYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHHCTTCCEEECBSSSCCSSGGGGGG---S-SCSCCCEEECCSSGGGTST-THHHHHHTTCSSCCEETTEETTSC
T ss_pred HHhhCCCCCEEeccCCccCcchhHHHH---h-cCCCCCEEEeeCCcCcchH-HHHHHHHHhCccCcEecCCCCChh
Confidence 345677888888877765432211111 1 3567887777543221110 012246788999999999987643
No 107
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.14 E-value=4.5e-06 Score=84.75 Aligned_cols=66 Identities=26% Similarity=0.294 Sum_probs=44.5
Q ss_pred ccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccC
Q 014150 137 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD 205 (430)
Q Consensus 137 ~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~ 205 (430)
.++|..+- +++++|+|++|.+.. +.+|.++++|+.|+|+++.+..- -...+.++++|++|.|.++.
T Consensus 44 ~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 44 YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp SSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCC
T ss_pred CccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCc
Confidence 34555431 468888888887654 45677888888888888876421 12235678888888888763
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.08 E-value=2.4e-06 Score=85.38 Aligned_cols=112 Identities=19% Similarity=0.114 Sum_probs=53.2
Q ss_pred CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 201 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l 201 (430)
.+++.+++..... ..+|..+. ++|+.|+|++|.+..-+ ..+++|+.|+|+++.++. +.. +. .+|+.|.+
T Consensus 59 ~~L~~L~Ls~n~L--~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNL--SSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LP--ASLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCC--SCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CC--TTCCEEEC
T ss_pred CCccEEEeCCCCC--CccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hh--cCCCEEEC
Confidence 3555555543322 22454332 55666666666655422 345666666666665543 222 21 16666666
Q ss_pred eccCCceEEEEeCCCcceEEEeccccceeeccCCCceEEEEEEE
Q 014150 202 MNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLY 245 (430)
Q Consensus 202 ~~c~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~ 245 (430)
.++.- ..+.-..++|+.|++.++.-...-..+++|+.|+++.+
T Consensus 128 s~N~l-~~lp~~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 128 DNNQL-TMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNN 170 (571)
T ss_dssp CSSCC-SCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred CCCcC-CCCCCcCccccEEeCCCCccCcCCCcCCCcCEEECCCC
Confidence 65421 11111345566666654321110013455666666543
No 109
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.06 E-value=9.2e-06 Score=76.45 Aligned_cols=214 Identities=16% Similarity=0.109 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHhCC-CceeEEEEEeccCC-Cc--chHHHHHHHH-HhCCceEEEEEecCCC--------cccCCCccccc
Q 014150 80 KLVNIVDHVLLLHN-GPILKFKLSHRDLL-GV--SDIDRWILYM-SRSCVKEFILEIWKGQ--------RYKVPSSLFLC 146 (430)
Q Consensus 80 ~~~~~v~~~l~~~~-~~l~~l~l~~~~~~-~~--~~v~~wl~~~-~~~~l~~l~l~~~~~~--------~~~lp~~~~~~ 146 (430)
.+.+.+.+++...+ ..++.+.+....+. .. ..+..+...+ .-++++.|.+...... ...+...+..+
T Consensus 92 ~~~~~~~~fl~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~ 171 (362)
T 2ra8_A 92 EGVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAM 171 (362)
T ss_dssp TTCCHHHHHHHCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTC
T ss_pred cHHHHHHHHhcCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcC
Confidence 34456677777654 34778877754432 11 1233333211 1268999987432111 01233444567
Q ss_pred CceeEEEEeeee-ecCCCCCCCCCCcceEEeeeEEechhhHHHHh-hcCccccceEeeccCCceEEEEeCCCcceEEEec
Q 014150 147 QNLIHLELFNCL-LKPPSTFKGFRNLKSLDLQHITLSQDVFENLI-SSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGG 224 (430)
Q Consensus 147 ~~L~~L~L~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~-s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l~~ 224 (430)
|+|++|.|+++. +..+ .+ ..++|++|+|..+.++++.+..+. +.+|+|++|.|..+..... ....++.+
T Consensus 172 P~L~~L~L~g~~~l~l~-~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~---~~~~~~~l---- 242 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLSIG-KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYG---FDGDMNVF---- 242 (362)
T ss_dssp TTCCEEEEECCBTCBCC-SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGT---CCSCGGGT----
T ss_pred CCCcEEEEeCCCCceec-cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccc---cchhHHHH----
Confidence 999999998873 2222 23 489999999998888887777665 3699999999863211000 00000000
Q ss_pred cccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHh--ccCCCccEEEEeeeeeehhhcccCCCCCCccccccc
Q 014150 225 VFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFF--VHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLN 302 (430)
Q Consensus 225 ~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~ 302 (430)
...+....+|+|+.|++..+... + .....+. ..+|+|++|+|+.+.+...........+ ..+++|+
T Consensus 243 -~~~l~~~~~p~Lr~L~L~~~~i~---------~-~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L-~~l~~L~ 310 (362)
T 2ra8_A 243 -RPLFSKDRFPNLKWLGIVDAEEQ---------N-VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV-DKIKHLK 310 (362)
T ss_dssp -GGGSCTTTCTTCCEEEEESCTTH---------H-HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTH-HHHTTCS
T ss_pred -HHHHhcCCCCCcCEEeCCCCCCc---------h-HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhc-ccCCcce
Confidence 00111135788888888654321 0 0111111 2578999999988765432111111111 2578999
Q ss_pred eeEEEEeeCChh
Q 014150 303 YLSIRINFNDLE 314 (430)
Q Consensus 303 ~L~l~~~~~~~~ 314 (430)
.|+++.+..+..
T Consensus 311 ~L~L~~n~i~d~ 322 (362)
T 2ra8_A 311 FINMKYNYLSDE 322 (362)
T ss_dssp EEECCSBBCCHH
T ss_pred EEECCCCcCCHH
Confidence 999976655543
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.05 E-value=1.4e-06 Score=71.06 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=34.5
Q ss_pred CceeEEEEeeeeec--C-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150 147 QNLIHLELFNCLLK--P-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 204 (430)
Q Consensus 147 ~~L~~L~L~~~~~~--~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c 204 (430)
++|+.|++++|.+. . +..+..+++|+.|++.++.+.+- ..+..+++|+.|.+.++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n 74 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDN 74 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSS
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCC
Confidence 56777777777665 2 34455677777777777665433 33455666666666654
No 111
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.05 E-value=2.8e-06 Score=78.43 Aligned_cols=187 Identities=13% Similarity=0.049 Sum_probs=117.2
Q ss_pred ceeEEEEEeccCCCc--chHHHHHHHHHhCCceEEEEEecCCCcccCC----CcccccCceeEEEEeeeeecC--CCCCC
Q 014150 95 PILKFKLSHRDLLGV--SDIDRWILYMSRSCVKEFILEIWKGQRYKVP----SSLFLCQNLIHLELFNCLLKP--PSTFK 166 (430)
Q Consensus 95 ~l~~l~l~~~~~~~~--~~v~~wl~~~~~~~l~~l~l~~~~~~~~~lp----~~~~~~~~L~~L~L~~~~~~~--~~~~~ 166 (430)
.++.+.+......+. ..+.. ....+++.|++....... ..+ ..+..+++|++|+|++|.+.. +..+.
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~----~~~~~L~~L~Ls~n~i~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 166 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLE----ATGLALSSLRLRNVSWAT-GRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR 166 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSS----CCCBCCSSCEEESCCCSS-TTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred ceeEEEeeCCEeccchhhhhhh----ccCCCCCEEEeecccccc-hhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence 388899887643221 11100 123578888887554321 111 122357899999999998765 34677
Q ss_pred CCCCcceEEeeeEEech-hhHH--HHhhcCccccceEeeccCCceEEE-------EeCCCcceEEEecccc-ce---eec
Q 014150 167 GFRNLKSLDLQHITLSQ-DVFE--NLISSSPTLERLTLMNFDGFTHLN-------IDAPNLQFFDIGGVFD-DV---TFE 232 (430)
Q Consensus 167 ~~~~L~~L~L~~~~~~~-~~l~--~l~s~cp~Le~L~l~~c~~~~~l~-------i~~p~L~~L~l~~~~~-~~---~~~ 232 (430)
.+++|++|+|+++.+.. ..+. ..+..+|+|++|.+.+|.- +.+. -..++|+.|++.++.- .. .+.
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~ 245 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP 245 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH
Confidence 89999999999998543 2222 2235789999999998743 2111 1348999999986421 11 133
Q ss_pred cC---CCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEE
Q 014150 233 NT---FHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRI 308 (430)
Q Consensus 233 ~~---p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 308 (430)
.+ ++|+.|+++.+...... . .-.++|+.|+++.+.+..+. .+. .+++|+.|+++.
T Consensus 246 ~~~~~~~L~~L~Ls~N~l~~lp------------~--~~~~~L~~L~Ls~N~l~~~~---~~~----~l~~L~~L~L~~ 303 (310)
T 4glp_A 246 RCMWSSALNSLNLSFAGLEQVP------------K--GLPAKLRVLDLSSNRLNRAP---QPD----ELPEVDNLTLDG 303 (310)
T ss_dssp SCCCCTTCCCEECCSSCCCSCC------------S--CCCSCCSCEECCSCCCCSCC---CTT----SCCCCSCEECSS
T ss_pred hccCcCcCCEEECCCCCCCchh------------h--hhcCCCCEEECCCCcCCCCc---hhh----hCCCccEEECcC
Confidence 33 79999999765432110 0 11279999999999876432 222 467899998843
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.04 E-value=3.5e-06 Score=85.02 Aligned_cols=143 Identities=24% Similarity=0.147 Sum_probs=100.0
Q ss_pred hCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceE
Q 014150 121 RSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT 200 (430)
Q Consensus 121 ~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~ 200 (430)
.++++.|++..+.. ..++. +..+++|+.|+|++|.+...+.+..+++|+.|+|+++.+.+- . -+..|++|+.|.
T Consensus 64 l~~L~~L~Ls~N~l--~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~ 137 (605)
T 1m9s_A 64 LPNVTKLFLNGNKL--TDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI--N-GLVHLPQLESLY 137 (605)
T ss_dssp CTTCCEEECTTSCC--CCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCC--G-GGGGCTTCSEEE
T ss_pred CCCCCEEEeeCCCC--CCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCC--c-cccCCCccCEEE
Confidence 36788877754322 23443 667889999999999888766788899999999999887642 2 266789999999
Q ss_pred eeccCCceEEE--EeCCCcceEEEecccc-c-eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEE
Q 014150 201 LMNFDGFTHLN--IDAPNLQFFDIGGVFD-D-VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLE 276 (430)
Q Consensus 201 l~~c~~~~~l~--i~~p~L~~L~l~~~~~-~-~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 276 (430)
|++|.- ..+. -..++|+.|.+.++.- . ..+..+++|+.|+++.+...+. ..+..+++|+.|.
T Consensus 138 Ls~N~l-~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l-------------~~l~~l~~L~~L~ 203 (605)
T 1m9s_A 138 LGNNKI-TDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL-------------RALAGLKNLDVLE 203 (605)
T ss_dssp CCSSCC-CCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC-------------GGGTTCTTCSEEE
T ss_pred CCCCcc-CCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCC-------------hHHccCCCCCEEE
Confidence 988742 2221 1247888998876421 1 1267889999999876533211 1267889999999
Q ss_pred Eeeeeee
Q 014150 277 IQSYFLK 283 (430)
Q Consensus 277 l~~~~~~ 283 (430)
|+.+.+.
T Consensus 204 L~~N~l~ 210 (605)
T 1m9s_A 204 LFSQECL 210 (605)
T ss_dssp CCSEEEE
T ss_pred ccCCcCc
Confidence 9988764
No 113
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.00 E-value=2.9e-06 Score=76.42 Aligned_cols=37 Identities=22% Similarity=0.551 Sum_probs=34.5
Q ss_pred CcccCCCcHHHHHHHHcCCCchhhh-hhhhhhhhhHhh
Q 014150 17 LDRLSSLPAHVIDQILSQLPIRDAV-RTSVLSKKWRYK 53 (430)
Q Consensus 17 ~d~is~LPdelL~~Ils~L~~~d~~-r~s~vskrWr~l 53 (430)
...+..||||+|..||++||.++++ |++.|||+|+.+
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 3578899999999999999999999 999999999986
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.99 E-value=4.5e-06 Score=72.92 Aligned_cols=151 Identities=17% Similarity=0.117 Sum_probs=82.9
Q ss_pred cCCCcccccCceeEEEEeeeeecC---CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeC
Q 014150 138 KVPSSLFLCQNLIHLELFNCLLKP---PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDA 214 (430)
Q Consensus 138 ~lp~~~~~~~~L~~L~L~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~ 214 (430)
.+|..+. +.++.|+|+++.+.. +..|..+++|+.|+|.++.++.- ....+..+++|++|.+.++.-. .
T Consensus 25 ~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~-~----- 95 (220)
T 2v70_A 25 KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILLTSNRLE-N----- 95 (220)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCC-C-----
T ss_pred cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEECCCCccC-c-----
Confidence 4555432 456788888887654 22366788888888888776532 1224566788888888765321 1
Q ss_pred CCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCC
Q 014150 215 PNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRL 294 (430)
Q Consensus 215 p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 294 (430)
...-.+..+++|+.|+++.+...... ...+.++++|+.|+|+.+.+..+.. ..+
T Consensus 96 -----------~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~~~~~----~~~ 149 (220)
T 2v70_A 96 -----------VQHKMFKGLESLKTLMLRSNRITCVG-----------NDSFIGLSSVRLLSLYDNQITTVAP----GAF 149 (220)
T ss_dssp -----------CCGGGGTTCSSCCEEECTTSCCCCBC-----------TTSSTTCTTCSEEECTTSCCCCBCT----TTT
T ss_pred -----------cCHhHhcCCcCCCEEECCCCcCCeEC-----------HhHcCCCccCCEEECCCCcCCEECH----HHh
Confidence 11112445666776666543322110 1224567888888888776653311 111
Q ss_pred CccccccceeEEEEe-eCChhhHHHHHHHHh
Q 014150 295 PRPCVDLNYLSIRIN-FNDLEENLAALCLLR 324 (430)
Q Consensus 295 ~~~~~~L~~L~l~~~-~~~~~~~~~l~~ll~ 324 (430)
. .+++|+.|++... +...-.+.++...++
T Consensus 150 ~-~l~~L~~L~L~~N~l~c~c~l~~l~~~~~ 179 (220)
T 2v70_A 150 D-TLHSLSTLNLLANPFNCNCYLAWLGEWLR 179 (220)
T ss_dssp T-TCTTCCEEECCSCCEECSGGGHHHHHHHH
T ss_pred c-CCCCCCEEEecCcCCcCCCchHHHHHHHH
Confidence 1 4567888877322 111123334555554
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.93 E-value=4.6e-06 Score=78.78 Aligned_cols=134 Identities=24% Similarity=0.212 Sum_probs=68.0
Q ss_pred cCCCcccccCceeEEEEeeeeecC--CCCCC-CCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEE--
Q 014150 138 KVPSSLFLCQNLIHLELFNCLLKP--PSTFK-GFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI-- 212 (430)
Q Consensus 138 ~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~-~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i-- 212 (430)
.+|..+. +.++.|+|++|.+.. +..+. ++++|+.|+|.++.+..-. ...+..+++|+.|+|+++. +..+.-
T Consensus 32 ~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 107 (361)
T 2xot_A 32 NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNH-LHTLDEFL 107 (361)
T ss_dssp SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECTTT
T ss_pred ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCc-CCcCCHHH
Confidence 3554332 356777777776654 23344 6777777777777654321 2235567777777777653 222211
Q ss_pred --eCCCcceEEEeccc----cceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeee
Q 014150 213 --DAPNLQFFDIGGVF----DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLK 283 (430)
Q Consensus 213 --~~p~L~~L~l~~~~----~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 283 (430)
..++|+.|.+.++. ....+.++++|+.|+++.+...... .....-+..+++|+.|+|+++.+.
T Consensus 108 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~--------~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 108 FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP--------VELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC--------GGGTC----CTTCCEEECCSSCCC
T ss_pred hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC--------HHHhcCcccCCcCCEEECCCCCCC
Confidence 12455555555421 1123456677777766544322110 000000145677777777766554
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.91 E-value=9.1e-06 Score=70.95 Aligned_cols=152 Identities=15% Similarity=0.125 Sum_probs=80.1
Q ss_pred eEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeCCCcceEEEeccccce
Q 014150 150 IHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDV 229 (430)
Q Consensus 150 ~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l~~~~~~~ 229 (430)
+.++++++.+...+. .-.+.++.|+|.++.+..-.....+..+++|+.|.+.++. +..+ ..-
T Consensus 14 ~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i----------------~~~ 75 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDI----------------EEG 75 (220)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEE----------------CTT
T ss_pred CEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEE----------------CHH
Confidence 366777666544211 1234667788777766533222335667777777777653 2111 111
Q ss_pred eeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEe
Q 014150 230 TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRIN 309 (430)
Q Consensus 230 ~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 309 (430)
.+..+++|+.|+++.+..... ....+.++++|++|.|+.+.+..+.. ..+. .+++|+.|+++..
T Consensus 76 ~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~-~l~~L~~L~L~~N 139 (220)
T 2v70_A 76 AFEGASGVNEILLTSNRLENV-----------QHKMFKGLESLKTLMLRSNRITCVGN----DSFI-GLSSVRLLSLYDN 139 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCC-----------CGGGGTTCSSCCEEECTTSCCCCBCT----TSST-TCTTCSEEECTTS
T ss_pred HhCCCCCCCEEECCCCccCcc-----------CHhHhcCCcCCCEEECCCCcCCeECH----hHcC-CCccCCEEECCCC
Confidence 244566677776654332211 01235667778888887776543211 1111 3557777777332
Q ss_pred eCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150 310 FNDLEENLAALCLLRSSPNLQELEMLARPE 339 (430)
Q Consensus 310 ~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 339 (430)
..... .+..+..+++|+.|++.+++-
T Consensus 140 ~l~~~----~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 140 QITTV----APGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCCB----CTTTTTTCTTCCEEECCSCCE
T ss_pred cCCEE----CHHHhcCCCCCCEEEecCcCC
Confidence 21110 123456677788887777653
No 117
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.88 E-value=3.1e-06 Score=75.36 Aligned_cols=34 Identities=29% Similarity=0.348 Sum_probs=32.2
Q ss_pred cCCCcHHHHHHHHcCCCchhhhhhhhhhhhhHhh
Q 014150 20 LSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYK 53 (430)
Q Consensus 20 is~LPdelL~~Ils~L~~~d~~r~s~vskrWr~l 53 (430)
++.||+||+.+||+||+.+|+++++.|||+||.+
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999973
No 118
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.86 E-value=5.8e-06 Score=80.62 Aligned_cols=175 Identities=18% Similarity=0.128 Sum_probs=113.1
Q ss_pred CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 201 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l 201 (430)
.+++.+++..+.. ..+|.. .++|+.|++++|.+..-+.+..+++|+.|++.++.+.. +. ...++|+.|.+
T Consensus 195 ~~L~~L~l~~N~l--~~l~~~---~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--l~---~~~~~L~~L~l 264 (454)
T 1jl5_A 195 PFLTAIYADNNSL--KKLPDL---PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT--LP---DLPPSLEALNV 264 (454)
T ss_dssp TTCCEEECCSSCC--SSCCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS--CC---SCCTTCCEEEC
T ss_pred CCCCEEECCCCcC--CcCCCC---cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc--cc---ccccccCEEEC
Confidence 5677777754432 234442 25899999999987764468899999999999988753 11 23588999999
Q ss_pred eccCCceEEEEeCCCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccC-CCccEEEEeee
Q 014150 202 MNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHL-PHIRRLEIQSY 280 (430)
Q Consensus 202 ~~c~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~ 280 (430)
.++.- ..+.-..++|+.|++.++.-.-.-.-.++|+.|+++.+.... +..+ ++|++|+++.+
T Consensus 265 ~~N~l-~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~----------------i~~~~~~L~~L~Ls~N 327 (454)
T 1jl5_A 265 RDNYL-TDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS----------------LCDLPPSLEELNVSNN 327 (454)
T ss_dssp CSSCC-SCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSE----------------ECCCCTTCCEEECCSS
T ss_pred CCCcc-cccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCc----------------ccCCcCcCCEEECCCC
Confidence 98742 223223478999998874321100123678888886443210 1233 58999999887
Q ss_pred eeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCC
Q 014150 281 FLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEE 340 (430)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~ 340 (430)
.+. .+|..+++|+.|+++.+... .++. .+++|+.|+++++.-.
T Consensus 328 ~l~---------~lp~~~~~L~~L~L~~N~l~-----~lp~---~l~~L~~L~L~~N~l~ 370 (454)
T 1jl5_A 328 KLI---------ELPALPPRLERLIASFNHLA-----EVPE---LPQNLKQLHVEYNPLR 370 (454)
T ss_dssp CCS---------CCCCCCTTCCEEECCSSCCS-----CCCC---CCTTCCEEECCSSCCS
T ss_pred ccc---------cccccCCcCCEEECCCCccc-----cccc---hhhhccEEECCCCCCC
Confidence 654 23334678999988544322 1222 4789999999887643
No 119
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.85 E-value=6.3e-06 Score=83.71 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=81.3
Q ss_pred CCceEEEEEecCCCcccCCC-cccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150 122 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 198 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~ 198 (430)
..+++|++..... ..+|. .+..+++|++|+|++|.+.. +.+|.++++|++|+|+++.+..- -...+.++++|++
T Consensus 52 ~~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCE
T ss_pred cCCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCE
Confidence 5788888754332 34554 45678999999999998764 45688999999999999986532 1235678999999
Q ss_pred eEeeccCCceEEE---E-eCCCcceEEEeccc-c----ceeeccCCCceEEEEEEE
Q 014150 199 LTLMNFDGFTHLN---I-DAPNLQFFDIGGVF-D----DVTFENTFHLALVSIGLY 245 (430)
Q Consensus 199 L~l~~c~~~~~l~---i-~~p~L~~L~l~~~~-~----~~~~~~~p~L~~l~i~~~ 245 (430)
|.+.++.- ..+. + ..++|+.|++.+.. . ...+..+++|+.|+++.+
T Consensus 129 L~Ls~N~l-~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 129 LVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp EECTTSCC-CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred EECCCCcC-CCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 99998742 2111 1 23677777776532 1 123455677777776543
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.84 E-value=1.1e-05 Score=70.48 Aligned_cols=130 Identities=21% Similarity=0.196 Sum_probs=82.4
Q ss_pred CCceEEEEEecCCCcccCCC-cccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150 122 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 198 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~ 198 (430)
.++++|++..... ..++. .+..+++|+.|+|++|.+.. +..|.++++|+.|+|+++.+..- -..++.++++|+.
T Consensus 32 ~~l~~L~l~~n~i--~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 32 ETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQL 108 (220)
T ss_dssp TTCCEEECCSSCC--CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcC--CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCE
Confidence 4677777754432 23444 45567899999999998754 56788999999999999987632 2334667899999
Q ss_pred eEeeccCCceEEEEeCCCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEe
Q 014150 199 LTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ 278 (430)
Q Consensus 199 L~l~~c~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 278 (430)
|.+.++.- ..+ ....+..+++|+.|+++.+...... ...+..+++|+.|+++
T Consensus 109 L~L~~N~l-~~~----------------~~~~~~~l~~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 109 LLLNANKI-NCL----------------RVDAFQDLHNLNLLSLYDNKLQTIA-----------KGTFSPLRAIQTMHLA 160 (220)
T ss_dssp EECCSSCC-CCC----------------CTTTTTTCTTCCEEECCSSCCSCCC-----------TTTTTTCTTCCEEECC
T ss_pred EECCCCCC-CEe----------------CHHHcCCCCCCCEEECCCCcCCEEC-----------HHHHhCCCCCCEEEeC
Confidence 99987632 111 1112445666666666543322110 1124566777777777
Q ss_pred eeee
Q 014150 279 SYFL 282 (430)
Q Consensus 279 ~~~~ 282 (430)
++.+
T Consensus 161 ~N~~ 164 (220)
T 2v9t_B 161 QNPF 164 (220)
T ss_dssp SSCE
T ss_pred CCCc
Confidence 6654
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.83 E-value=4e-06 Score=71.93 Aligned_cols=64 Identities=27% Similarity=0.275 Sum_probs=44.6
Q ss_pred CCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150 139 VPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 204 (430)
Q Consensus 139 lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c 204 (430)
+|..+..+++|+.|++++|.+...+.+.++++|+.|+|.++.+. .+...+..+++|+.|.+.++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYN 103 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEE
T ss_pred hhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCC
Confidence 44456667888888888887766446667788888888888775 23444555677777777765
No 122
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.81 E-value=1.5e-05 Score=68.81 Aligned_cols=130 Identities=16% Similarity=0.098 Sum_probs=83.2
Q ss_pred CCceEEEEEecCCCcccCCCc-ccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150 122 SCVKEFILEIWKGQRYKVPSS-LFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 198 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~ 198 (430)
.+++.+++..... ..++.. +..+++|++|+++++.+.. +..|..+++|++|+|.++.+..- ....+..+++|+.
T Consensus 28 ~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 28 AQTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKE 104 (208)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCcc--CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCE
Confidence 4677777755432 245544 4568999999999998765 23467899999999999987632 2334677899999
Q ss_pred eEeeccCCceEEEEeCCCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEe
Q 014150 199 LTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ 278 (430)
Q Consensus 199 L~l~~c~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 278 (430)
|.+.++. +..+ ....+..+++|+.|+++.+...... ...+..+++|++|+++
T Consensus 105 L~L~~N~-l~~~----------------~~~~~~~l~~L~~L~l~~N~l~~~~-----------~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 105 LALNTNQ-LQSL----------------PDGVFDKLTQLKDLRLYQNQLKSVP-----------DGVFDRLTSLQYIWLH 156 (208)
T ss_dssp EECCSSC-CCCC----------------CTTTTTTCTTCCEEECCSSCCSCCC-----------TTTTTTCTTCCEEECC
T ss_pred EEcCCCc-Cccc----------------CHhHhccCCcCCEEECCCCccceeC-----------HHHhccCCCccEEEec
Confidence 9998753 2111 1112445677777777544221110 1225667888888887
Q ss_pred eeee
Q 014150 279 SYFL 282 (430)
Q Consensus 279 ~~~~ 282 (430)
++.+
T Consensus 157 ~N~~ 160 (208)
T 2o6s_A 157 DNPW 160 (208)
T ss_dssp SCCB
T ss_pred CCCe
Confidence 7643
No 123
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.80 E-value=6.3e-06 Score=68.54 Aligned_cols=86 Identities=9% Similarity=0.062 Sum_probs=64.2
Q ss_pred CCceEEEEEecCCCcccCCCcccccCceeEEEEeeee-ecCC--CCCCC----CCCcceEEeeeEE-echhhHHHHhhcC
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCL-LKPP--STFKG----FRNLKSLDLQHIT-LSQDVFENLISSS 193 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~-~~~~--~~~~~----~~~L~~L~L~~~~-~~~~~l~~l~s~c 193 (430)
..++++++..+......+.. +..|++|++|+|++|. +.+. ..+.. +++|+.|+|++|. +++..+..+ +.|
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGC
T ss_pred ceEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcC
Confidence 35788888776544333433 4679999999999995 4431 11223 3689999999997 999988775 579
Q ss_pred ccccceEeeccCCceE
Q 014150 194 PTLERLTLMNFDGFTH 209 (430)
Q Consensus 194 p~Le~L~l~~c~~~~~ 209 (430)
++|++|.|.+|+.++.
T Consensus 139 ~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCEEEEESCTTCCC
T ss_pred CCCCEEECCCCCCCCc
Confidence 9999999999987753
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.80 E-value=6.7e-06 Score=73.94 Aligned_cols=141 Identities=17% Similarity=0.154 Sum_probs=87.5
Q ss_pred CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 201 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l 201 (430)
.+++.+++..+.. ..++ .+..+++|+.|+|++|.+.....+..+++|+.|+|+++.+.+- ..+ .. ++|+.|.+
T Consensus 41 ~~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l--~~~-~~-~~L~~L~L 113 (263)
T 1xeu_A 41 SGVQNFNGDNSNI--QSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNL--NGI-PS-ACLSRLFL 113 (263)
T ss_dssp TTCSEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCC--TTC-CC-SSCCEEEC
T ss_pred CcCcEEECcCCCc--ccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCc--Ccc-cc-CcccEEEc
Confidence 5667666654322 2344 4556778888888887776533367778888888888776531 111 12 77888887
Q ss_pred eccCCceEEE--EeCCCcceEEEeccc-cce-eeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEE
Q 014150 202 MNFDGFTHLN--IDAPNLQFFDIGGVF-DDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEI 277 (430)
Q Consensus 202 ~~c~~~~~l~--i~~p~L~~L~l~~~~-~~~-~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 277 (430)
.++.- ..+. -..++|+.|++.++. ..+ .+..+++|+.|+++.+...+. ..+..+++|+.|++
T Consensus 114 ~~N~l-~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~-------------~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 114 DNNEL-RDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT-------------GGLTRLKKVNWIDL 179 (263)
T ss_dssp CSSCC-SBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC-------------TTSTTCCCCCEEEE
T ss_pred cCCcc-CCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch-------------HHhccCCCCCEEeC
Confidence 76631 1111 123677777776532 111 356788999998865433211 33678899999999
Q ss_pred eeeeee
Q 014150 278 QSYFLK 283 (430)
Q Consensus 278 ~~~~~~ 283 (430)
+++.+.
T Consensus 180 ~~N~~~ 185 (263)
T 1xeu_A 180 TGQKCV 185 (263)
T ss_dssp EEEEEE
T ss_pred CCCccc
Confidence 988764
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.78 E-value=4.7e-06 Score=70.01 Aligned_cols=58 Identities=10% Similarity=0.027 Sum_probs=32.5
Q ss_pred cccCceeEEEEeeeeecCCCCCCCC-CCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150 144 FLCQNLIHLELFNCLLKPPSTFKGF-RNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 204 (430)
Q Consensus 144 ~~~~~L~~L~L~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c 204 (430)
..+++|+.|++++|.+...+.+..+ ++|+.|+|+++.+.+- ..+..++.|+.|.++++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N 74 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNN 74 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSS
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCC
Confidence 3456677777777666543333333 3667777766665431 23445566666666554
No 126
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.74 E-value=2.6e-05 Score=76.03 Aligned_cols=176 Identities=15% Similarity=-0.001 Sum_probs=112.4
Q ss_pred CceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEee
Q 014150 123 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM 202 (430)
Q Consensus 123 ~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~ 202 (430)
+++.+++..... ..+| .+..+++|+.|++++|.+..-+. ..++|+.|++.++.+.. +.. +..+++|+.|.+.
T Consensus 174 ~L~~L~L~~n~l--~~l~-~~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 174 SLEFIAAGNNQL--EELP-ELQNLPFLTAIYADNNSLKKLPD--LPLSLESIVAGNNILEE--LPE-LQNLPFLTTIYAD 245 (454)
T ss_dssp TCCEEECCSSCC--SSCC-CCTTCTTCCEEECCSSCCSSCCC--CCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECC
T ss_pred cccEEECcCCcC--CcCc-cccCCCCCCEEECCCCcCCcCCC--CcCcccEEECcCCcCCc--ccc-cCCCCCCCEEECC
Confidence 555555543322 2355 46788999999999998765222 24699999999998762 332 6789999999999
Q ss_pred ccCCceEEEEeCCCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeee
Q 014150 203 NFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFL 282 (430)
Q Consensus 203 ~c~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 282 (430)
++.- ..+.-..++|+.|++.++.-.-.-...++|+.++++.+..... -...++|+.|+++.+.+
T Consensus 246 ~N~l-~~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l---------------~~~~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 246 NNLL-KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL---------------SELPPNLYYLNASSNEI 309 (454)
T ss_dssp SSCC-SSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEE---------------SCCCTTCCEEECCSSCC
T ss_pred CCcC-CcccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcc---------------cCcCCcCCEEECcCCcC
Confidence 8642 2222234799999998743211112347899998875432210 01126899999998765
Q ss_pred ehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150 283 KYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 339 (430)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 339 (430)
..+ +...++|+.|+++.+... +++ ..+++|+.|+++++.-
T Consensus 310 ~~i---------~~~~~~L~~L~Ls~N~l~-----~lp---~~~~~L~~L~L~~N~l 349 (454)
T 1jl5_A 310 RSL---------CDLPPSLEELNVSNNKLI-----ELP---ALPPRLERLIASFNHL 349 (454)
T ss_dssp SEE---------CCCCTTCCEEECCSSCCS-----CCC---CCCTTCCEEECCSSCC
T ss_pred Ccc---------cCCcCcCCEEECCCCccc-----ccc---ccCCcCCEEECCCCcc
Confidence 421 111248999998543221 122 2368999999988754
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.74 E-value=1.3e-05 Score=67.19 Aligned_cols=132 Identities=19% Similarity=0.159 Sum_probs=81.9
Q ss_pred CCceEEEEEecCCCcccCCCccccc-CceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceE
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLFLC-QNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT 200 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~ 200 (430)
.+++++.+..+... .+|. +..+ ++|+.|++++|.+.....+..+++|+.|+|+++.+..- ...++..+++|+.|.
T Consensus 19 ~~L~~L~l~~n~l~--~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIP--VIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCC--SCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCc--hhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCccccc-CcchhhcCCCCCEEE
Confidence 46677766543322 3444 3444 59999999999877656788999999999999987632 123457899999999
Q ss_pred eeccCCceEEEEeCCCcceEEEeccccc-eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEee
Q 014150 201 LMNFDGFTHLNIDAPNLQFFDIGGVFDD-VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQS 279 (430)
Q Consensus 201 l~~c~~~~~l~i~~p~L~~L~l~~~~~~-~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 279 (430)
+.++.- .. ... ..+..+++|+.++++.+..... ...-...+..+++|+.|+++.
T Consensus 95 L~~N~i-~~----------------~~~~~~l~~l~~L~~L~l~~N~i~~~--------~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 95 LTNNSL-VE----------------LGDLDPLASLKSLTYLCILRNPVTNK--------KHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp CCSCCC-CC----------------GGGGGGGGGCTTCCEEECCSSGGGGS--------TTHHHHHHHHCTTCSEETTEE
T ss_pred CCCCcC-Cc----------------chhhHhhhcCCCCCEEEecCCCCCCc--------HhHHHHHHHHCCccceeCCCc
Confidence 987642 11 111 1244566677766654332110 011112456777777777776
Q ss_pred eee
Q 014150 280 YFL 282 (430)
Q Consensus 280 ~~~ 282 (430)
+..
T Consensus 150 n~~ 152 (176)
T 1a9n_A 150 VKL 152 (176)
T ss_dssp CCH
T ss_pred CCH
Confidence 544
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.73 E-value=2.2e-05 Score=68.90 Aligned_cols=129 Identities=19% Similarity=0.100 Sum_probs=85.9
Q ss_pred CCceEEEEEecCCCcccC-CCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150 122 SCVKEFILEIWKGQRYKV-PSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 198 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~ 198 (430)
.+++.|++..... ..+ |..+..+++|+.|+|++|.+.. +..|..+++|+.|+|+++.+..- ....+..+++|+.
T Consensus 40 ~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 40 TNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKE 116 (229)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCCEEEcCCCcc--CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCe
Confidence 6788888765432 223 4455678999999999998865 23467899999999999987632 2344667899999
Q ss_pred eEeeccCCceEEEEeCCCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEe
Q 014150 199 LTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ 278 (430)
Q Consensus 199 L~l~~c~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 278 (430)
|.+.++. +..+ | ..+..+++|+.|+++.+...... ...+..+++|+.|++.
T Consensus 117 L~Ls~N~-l~~l----p-------------~~~~~l~~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 117 LFMCCNK-LTEL----P-------------RGIERLTHLTHLALDQNQLKSIP-----------HGAFDRLSSLTHAYLF 167 (229)
T ss_dssp EECCSSC-CCSC----C-------------TTGGGCTTCSEEECCSSCCCCCC-----------TTTTTTCTTCCEEECT
T ss_pred EeccCCc-cccc----C-------------cccccCCCCCEEECCCCcCCccC-----------HHHHhCCCCCCEEEee
Confidence 9998753 2111 0 12346677777777654322110 1235678889998888
Q ss_pred eeee
Q 014150 279 SYFL 282 (430)
Q Consensus 279 ~~~~ 282 (430)
++.+
T Consensus 168 ~N~~ 171 (229)
T 3e6j_A 168 GNPW 171 (229)
T ss_dssp TSCB
T ss_pred CCCc
Confidence 7654
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.68 E-value=2.6e-05 Score=66.51 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=17.6
Q ss_pred hccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEE
Q 014150 266 FVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSI 306 (430)
Q Consensus 266 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 306 (430)
+.++++|+.|+|+++.+..+..+ ....+++|++|++
T Consensus 98 f~~l~~L~~L~L~~N~l~~~~~~-----~~~~l~~L~~L~L 133 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGNDISVVPEG-----AFNDLSALSHLAI 133 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTT-----TTTTCTTCCEEEC
T ss_pred hCCCCCCCEEECCCCCCCeeChh-----hhhcCccccEEEe
Confidence 34556666666666554432111 1113446666666
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.64 E-value=2.4e-05 Score=66.64 Aligned_cols=65 Identities=20% Similarity=0.200 Sum_probs=40.5
Q ss_pred ccCCCcccccCceeEEEEeeeeecC-CC--CCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150 137 YKVPSSLFLCQNLIHLELFNCLLKP-PS--TFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 204 (430)
Q Consensus 137 ~~lp~~~~~~~~L~~L~L~~~~~~~-~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c 204 (430)
..+|..+. ++|+.|+++++.+.. +. .+..+++|+.|+|+++.++.- ....+..++.|+.|.+.++
T Consensus 21 ~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 21 KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSC
T ss_pred CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCC
Confidence 34555443 377788888777654 22 256778888888877776532 1233556677777777764
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.63 E-value=5.2e-05 Score=63.49 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=31.3
Q ss_pred CceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150 147 QNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 204 (430)
Q Consensus 147 ~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c 204 (430)
++|+.|+++++.+.. +..+..+++|+.|+|.++.+..- ....+..+++|+.|.+.++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCC
Confidence 466777777666543 22345666677777666655421 1222345566666665543
No 132
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.62 E-value=1.4e-05 Score=77.70 Aligned_cols=41 Identities=22% Similarity=0.364 Sum_probs=37.4
Q ss_pred CCcccCCCcHHHHHHHHcCCCchhhhhhhhhhhhhHhhcCc
Q 014150 16 ELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWAT 56 (430)
Q Consensus 16 ~~d~is~LPdelL~~Ils~L~~~d~~r~s~vskrWr~lw~~ 56 (430)
..|.++.||+|++.+||+||+.+|+++++.|||+|+++...
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 56899999999999999999999999999999999976443
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.60 E-value=4.1e-05 Score=72.20 Aligned_cols=147 Identities=22% Similarity=0.110 Sum_probs=94.2
Q ss_pred CCceEEEEEecCCCcccCCCccc--ccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCcccc
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLF--LCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLE 197 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~--~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le 197 (430)
..++.|++..... ..++...+ .+++|+.|+|++|.+.. +..|.++++|+.|+|+++.+..- ....+..+++|+
T Consensus 39 ~~l~~L~Ls~N~l--~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALE 115 (361)
T ss_dssp TTCSEEECCSSCC--CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCC
T ss_pred CCCCEEECCCCCC--CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCC
Confidence 4566766654322 23444333 67899999999988764 34688899999999999886532 233467789999
Q ss_pred ceEeeccCCceEEEE----eCCCcceEEEeccc-cc---eee---ccCCCceEEEEEEEeeccccccCCCCCcchHHHHh
Q 014150 198 RLTLMNFDGFTHLNI----DAPNLQFFDIGGVF-DD---VTF---ENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFF 266 (430)
Q Consensus 198 ~L~l~~c~~~~~l~i----~~p~L~~L~l~~~~-~~---~~~---~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l 266 (430)
.|.|.++. +..+.- ..++|+.|.+.++. .. ..+ ..+++|+.|+++....... -...+
T Consensus 116 ~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-----------~~~~~ 183 (361)
T 2xot_A 116 VLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL-----------PLTDL 183 (361)
T ss_dssp EEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC-----------CHHHH
T ss_pred EEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc-----------CHHHh
Confidence 99999764 222211 24789999887642 11 122 4689999999976432211 02334
Q ss_pred ccCCC--ccEEEEeeeeee
Q 014150 267 VHLPH--IRRLEIQSYFLK 283 (430)
Q Consensus 267 ~~~~~--L~~L~l~~~~~~ 283 (430)
..+++ ++.|.|.++.+.
T Consensus 184 ~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 184 QKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHSCHHHHTTEECCSSCEE
T ss_pred hhccHhhcceEEecCCCcc
Confidence 56666 478998877653
No 134
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.53 E-value=2.7e-05 Score=73.70 Aligned_cols=149 Identities=13% Similarity=0.044 Sum_probs=89.0
Q ss_pred CCCCcceEEeeeEEechhhH---HHHhh-cCccccceEeeccCCceEEEEeCCCcceEEEeccccceeeccCCCceEEEE
Q 014150 167 GFRNLKSLDLQHITLSQDVF---ENLIS-SSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSI 242 (430)
Q Consensus 167 ~~~~L~~L~L~~~~~~~~~l---~~l~s-~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i 242 (430)
..++|+.|+|.++.+++... ...+. .++.|++|+|++|.-.. .........+++|+.|++
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~----------------~~~~~l~~~L~~L~~L~L 133 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP----------------AGLRTLLPVFLRARKLGL 133 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH----------------HHHHHTHHHHHTEEEEEC
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH----------------HHHHHHHHHHHhccHhhc
Confidence 35789999999999876543 33333 34789999998874210 000111123456777777
Q ss_pred EEEeeccccccCCCCCcchHHHHh-ccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHH
Q 014150 243 GLYVNVKNDQAMGPGNSCKLLRFF-VHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALC 321 (430)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 321 (430)
+.+...+. ....+...+ ...++|++|+|+++.+...........+ ...++|++|+++.+......+..+..
T Consensus 134 s~n~l~~~-------~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 134 QLNSLGPE-------ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL-AGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp CSSCCCHH-------HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH-HTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred CCCCCCHH-------HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH-hcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 65432110 112333444 3578999999998876432111100000 13557999998665444444556777
Q ss_pred HHhcCCCccEEEEeecCC
Q 014150 322 LLRSSPNLQELEMLARPE 339 (430)
Q Consensus 322 ll~~~p~L~~L~l~~~~~ 339 (430)
.++.+++|+.|+|+++.-
T Consensus 206 ~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HGGGCSCCCEEECCSSCC
T ss_pred HHhcCCCcCeEECCCCCC
Confidence 888899999999998754
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.49 E-value=5.8e-05 Score=75.59 Aligned_cols=105 Identities=18% Similarity=0.146 Sum_probs=62.4
Q ss_pred ceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeCCCcceEEEecccc
Q 014150 148 NLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFD 227 (430)
Q Consensus 148 ~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l~~~~~ 227 (430)
.|+.|+|++|.+...+.+..+++|+.|+|+++.+. .+...+..+++|+.|.|+++. ++.+ +
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~l----------------p 502 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNA-LENV----------------D 502 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSC-CCCC----------------G
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCC-CCCC----------------c
Confidence 47777777777665334667777777777777765 234456667777777777642 1110 1
Q ss_pred ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeee
Q 014150 228 DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLK 283 (430)
Q Consensus 228 ~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 283 (430)
.+..+++|+.|+++.+...... ....+..+++|+.|+|+++.+.
T Consensus 503 --~l~~l~~L~~L~Ls~N~l~~~~----------~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 503 --GVANLPRLQELLLCNNRLQQSA----------AIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp --GGTTCSSCCEEECCSSCCCSSS----------TTGGGGGCTTCCEEECTTSGGG
T ss_pred --ccCCCCCCcEEECCCCCCCCCC----------CcHHHhcCCCCCEEEecCCcCC
Confidence 2445666776666543321110 0123567788888888777654
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.47 E-value=2.4e-05 Score=78.32 Aligned_cols=125 Identities=16% Similarity=0.125 Sum_probs=70.6
Q ss_pred CcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeCCCcceEEEeccccceeeccCCCceEEEEEEEeecc
Q 014150 170 NLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVK 249 (430)
Q Consensus 170 ~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~ 249 (430)
.|+.|+|+++.++. +.. +..+++|+.|.++++. +.. .+ ..+..+++|+.|+++.+....
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~-l~~----------------lp-~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNR-LRA----------------LP-PALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSC-CCC----------------CC-GGGGGCTTCCEEECCSSCCCC
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCccc-ccc----------------cc-hhhhcCCCCCEEECCCCCCCC
Confidence 57888888887654 333 6677788888887653 111 11 134567778887776543211
Q ss_pred ccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCc
Q 014150 250 NDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNL 329 (430)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L 329 (430)
+. .+..+++|+.|+|+++.+..+.. +..+. .+++|+.|+++.+..... ......++..+|+|
T Consensus 501 ------------lp-~l~~l~~L~~L~Ls~N~l~~~~~---p~~l~-~l~~L~~L~L~~N~l~~~-~~~~~~l~~~lp~L 562 (567)
T 1dce_A 501 ------------VD-GVANLPRLQELLLCNNRLQQSAA---IQPLV-SCPRLVLLNLQGNSLCQE-EGIQERLAEMLPSV 562 (567)
T ss_dssp ------------CG-GGTTCSSCCEEECCSSCCCSSST---TGGGG-GCTTCCEEECTTSGGGGS-SSCTTHHHHHCTTC
T ss_pred ------------Cc-ccCCCCCCcEEECCCCCCCCCCC---cHHHh-cCCCCCEEEecCCcCCCC-ccHHHHHHHHCccc
Confidence 11 35778888888888776643210 11111 456777777743211110 00123455668888
Q ss_pred cEEE
Q 014150 330 QELE 333 (430)
Q Consensus 330 ~~L~ 333 (430)
+.|.
T Consensus 563 ~~L~ 566 (567)
T 1dce_A 563 SSIL 566 (567)
T ss_dssp SEEE
T ss_pred CccC
Confidence 8875
No 137
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.44 E-value=5.1e-05 Score=71.23 Aligned_cols=59 Identities=19% Similarity=0.072 Sum_probs=35.6
Q ss_pred HhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEee
Q 014150 265 FFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLA 336 (430)
Q Consensus 265 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~ 336 (430)
.+.++++|+.|+++++.+..+.. ..|.+|++|.+..... +..++ -+..+++|+.+++..
T Consensus 197 ~f~~l~~L~~LdLs~N~l~~lp~--------~~~~~L~~L~~l~~~~----l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 197 VFHGASGPVILDISRTRIHSLPS--------YGLENLKKLRARSTYN----LKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp TTTTEECCSEEECTTSCCCCCCS--------SSCTTCCEEECTTCTT----CCCCC-CTTTCCSCCEEECSC
T ss_pred HhccCcccchhhcCCCCcCccCh--------hhhccchHhhhccCCC----cCcCC-CchhCcChhhCcCCC
Confidence 35778899999998887653221 1366777777622111 11222 256678888888754
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.40 E-value=0.00012 Score=62.28 Aligned_cols=65 Identities=22% Similarity=0.204 Sum_probs=30.6
Q ss_pred cCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeec
Q 014150 138 KVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMN 203 (430)
Q Consensus 138 ~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~ 203 (430)
.+|..+..+++|+.|+|++|.+.. +..|.++++|++|+|+++.+..-. ...+..+++|+.|.|.+
T Consensus 45 ~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECCS
T ss_pred hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCCEEECCC
Confidence 344444445555555555555443 223455555555555555543211 11233445555555554
No 139
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.39 E-value=7.6e-05 Score=72.18 Aligned_cols=38 Identities=26% Similarity=0.384 Sum_probs=35.7
Q ss_pred CCcccCCCcHHHHHHHHcCCCchhhhhhhhhhhhhHhh
Q 014150 16 ELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYK 53 (430)
Q Consensus 16 ~~d~is~LPdelL~~Ils~L~~~d~~r~s~vskrWr~l 53 (430)
..|.++.||+|++.+||+||+.+|+++++.|||+|+.+
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 56889999999999999999999999999999999873
No 140
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.37 E-value=4.5e-05 Score=73.67 Aligned_cols=37 Identities=27% Similarity=0.529 Sum_probs=35.1
Q ss_pred CCcccCCCcHH----HHHHHHcCCCchhhhhhhhhhhhhHh
Q 014150 16 ELDRLSSLPAH----VIDQILSQLPIRDAVRTSVLSKKWRY 52 (430)
Q Consensus 16 ~~d~is~LPde----lL~~Ils~L~~~d~~r~s~vskrWr~ 52 (430)
..|.++.||+| |+.+||+||+.+++++++.|||+|++
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~ 47 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR 47 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 46899999999 99999999999999999999999995
No 141
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.27 E-value=0.00012 Score=61.82 Aligned_cols=39 Identities=13% Similarity=0.047 Sum_probs=25.5
Q ss_pred ccceeEE--EEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150 300 DLNYLSI--RINFNDLEENLAALCLLRSSPNLQELEMLARP 338 (430)
Q Consensus 300 ~L~~L~l--~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 338 (430)
+|++|++ ..+..+......+...++.+++|++|+|+++.
T Consensus 122 ~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 122 SLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp SCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4666666 33433444455677778888888888887754
No 142
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.24 E-value=0.00032 Score=70.09 Aligned_cols=181 Identities=12% Similarity=0.009 Sum_probs=108.0
Q ss_pred ceeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceE
Q 014150 95 PILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSL 174 (430)
Q Consensus 95 ~l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L 174 (430)
.++.+.+......+ +... ...+++.|++..+... .+| ..+++|+.|+|++|.+..-+.+.. +|+.|
T Consensus 60 ~L~~L~Ls~n~L~~---lp~~----l~~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLNLSS---LPDN----LPPQITVLEITQNALI--SLP---ELPASLEYLDACDNRLSTLPELPA--SLKHL 125 (571)
T ss_dssp TCSEEECCSSCCSC---CCSC----CCTTCSEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEE
T ss_pred CccEEEeCCCCCCc---cCHh----HcCCCCEEECcCCCCc--ccc---cccCCCCEEEccCCCCCCcchhhc--CCCEE
Confidence 47777777654322 1111 1257888888654332 566 346899999999998876333433 99999
Q ss_pred EeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeCCCcceEEEecccc-cee-eccCCCceEEEEEEEeeccccc
Q 014150 175 DLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFD-DVT-FENTFHLALVSIGLYVNVKNDQ 252 (430)
Q Consensus 175 ~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l~~~~~-~~~-~~~~p~L~~l~i~~~~~~~~~~ 252 (430)
+|+++.++. +.. .+++|+.|.+.++.- ..+.-..++|+.|.+.++.- .+. +. ++|+.|+++.+......
T Consensus 126 ~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l-~~lp~~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp- 196 (571)
T 3cvr_A 126 DVDNNQLTM--LPE---LPALLEYINADNNQL-TMLPELPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLP- 196 (571)
T ss_dssp ECCSSCCSC--CCC---CCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCC-
T ss_pred ECCCCcCCC--CCC---cCccccEEeCCCCcc-CcCCCcCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchh-
Confidence 999998764 222 689999999998642 22222457999999987421 111 22 78999988765432110
Q ss_pred cCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeC
Q 014150 253 AMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFN 311 (430)
Q Consensus 253 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 311 (430)
... ..+....+.|+.|+|+++.+..+. ..+. .+++|+.|+++.+..
T Consensus 197 -----~~~--~~L~~~~~~L~~L~Ls~N~l~~lp-----~~l~-~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 197 -----AVP--VRNHHSEETEIFFRCRENRITHIP-----ENIL-SLDPTCTIILEDNPL 242 (571)
T ss_dssp -----CCC----------CCEEEECCSSCCCCCC-----GGGG-GSCTTEEEECCSSSC
T ss_pred -----hHH--HhhhcccccceEEecCCCcceecC-----HHHh-cCCCCCEEEeeCCcC
Confidence 000 022233344599999988765321 1122 366888888855433
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.20 E-value=0.00027 Score=60.01 Aligned_cols=80 Identities=20% Similarity=0.250 Sum_probs=58.4
Q ss_pred CceEEEEEecCCCcccCCC--cccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150 123 CVKEFILEIWKGQRYKVPS--SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 198 (430)
Q Consensus 123 ~l~~l~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~ 198 (430)
.+++|.+..... ..++. .+..+++|++|+|++|.+.. +..|.++++|+.|+|+++.+..-. ...+...++|+.
T Consensus 30 ~l~~L~l~~n~i--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~ 106 (192)
T 1w8a_A 30 HTTELLLNDNEL--GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS-NKMFLGLHQLKT 106 (192)
T ss_dssp TCSEEECCSCCC--CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCTTCCE
T ss_pred CCCEEECCCCcC--CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccC-HHHhcCCCCCCE
Confidence 677777654432 23443 35678999999999998875 457889999999999999876431 233566888888
Q ss_pred eEeeccC
Q 014150 199 LTLMNFD 205 (430)
Q Consensus 199 L~l~~c~ 205 (430)
|++.++.
T Consensus 107 L~L~~N~ 113 (192)
T 1w8a_A 107 LNLYDNQ 113 (192)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 8888753
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.01 E-value=0.00064 Score=56.39 Aligned_cols=65 Identities=22% Similarity=0.306 Sum_probs=47.5
Q ss_pred ccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150 137 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 204 (430)
Q Consensus 137 ~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c 204 (430)
..+|..+. ++|+.|+|++|.+.. +..|.++++|+.|+|+++.+..- ....+..+++|+.|.|.+.
T Consensus 22 ~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 22 ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred CccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCC
Confidence 45665543 788999999988765 44577899999999999887632 2334567888888888865
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.96 E-value=0.00075 Score=56.24 Aligned_cols=65 Identities=22% Similarity=0.237 Sum_probs=46.1
Q ss_pred ccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150 137 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 204 (430)
Q Consensus 137 ~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c 204 (430)
..+|..+. ++|+.|+|++|.+.. +..|.++++|+.|+|+++.+..- ...++..+++|+.|+|.+.
T Consensus 25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCC
Confidence 45666543 788899999888765 34577888999999988876532 1233566788888888764
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.94 E-value=0.00032 Score=65.02 Aligned_cols=169 Identities=18% Similarity=0.228 Sum_probs=89.4
Q ss_pred cCceeEEEEeeeeec--CCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEee-----------------ccCC
Q 014150 146 CQNLIHLELFNCLLK--PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM-----------------NFDG 206 (430)
Q Consensus 146 ~~~L~~L~L~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~-----------------~c~~ 206 (430)
|++|+.|.|.. .+. ...+|.+|++|+.|+|..+.+..- -...+..|..+..+.+. +|..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i-~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNL-LPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEE-CTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcccc-chhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 78888888876 332 346688888888888877643210 01223445555555432 2322
Q ss_pred ce-EEEE---------------eCCCcceEEEeccccceee----ccCCCceEEEEEEEeeccccccCCCCCcchHHHHh
Q 014150 207 FT-HLNI---------------DAPNLQFFDIGGVFDDVTF----ENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFF 266 (430)
Q Consensus 207 ~~-~l~i---------------~~p~L~~L~l~~~~~~~~~----~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l 266 (430)
+. .+.+ ...++..+.+.+......+ ..+++|+.+++......... ...+
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~-----------~~aF 246 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIP-----------DFTF 246 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEEC-----------TTTT
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceec-----------Hhhh
Confidence 22 1111 1234445555443221111 23788998888643211110 1236
Q ss_pred ccCCCccEEEEeeeeeehhhcccCCCCCCccccccc-eeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150 267 VHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLN-YLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 338 (430)
Q Consensus 267 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 338 (430)
.++++|+.+.+..+ +..+.. ..-..+.+|+ .+.+........ ...+..|++|+.+++..+.
T Consensus 247 ~~~~~L~~l~l~~n-i~~I~~-----~aF~~~~~L~~~l~l~~~l~~I~-----~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 247 AQKKYLLKIKLPHN-LKTIGQ-----RVFSNCGRLAGTLELPASVTAIE-----FGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp TTCTTCCEEECCTT-CCEECT-----TTTTTCTTCCEEEEECTTCCEEC-----TTTTTTCTTEEEEEECSSC
T ss_pred hCCCCCCEEECCcc-cceehH-----HHhhCChhccEEEEEcccceEEc-----hhhhhCCccCCEEEeCCCc
Confidence 88999999999875 322111 1111455677 777732111100 1347889999999986654
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.90 E-value=0.00019 Score=61.25 Aligned_cols=98 Identities=19% Similarity=0.061 Sum_probs=68.4
Q ss_pred hCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccce
Q 014150 121 RSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL 199 (430)
Q Consensus 121 ~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L 199 (430)
-..++.|++..+.. ..+| .+..+++|+.|++++|.+.. +..+..+++|+.|+|+++.+.+ +. -+..+++|+.|
T Consensus 47 l~~L~~L~ls~n~l--~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 47 LKACKHLALSTNNI--EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LS-GIEKLVNLRVL 120 (198)
T ss_dssp TTTCSEEECSEEEE--SCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC--HH-HHHHHHHSSEE
T ss_pred CCCCCEEECCCCCC--cccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc--CC-ccccCCCCCEE
Confidence 46888888854432 2356 66778999999999998875 2233456899999999998765 23 36678999999
Q ss_pred EeeccCCceEEE-----EeCCCcceEEEecc
Q 014150 200 TLMNFDGFTHLN-----IDAPNLQFFDIGGV 225 (430)
Q Consensus 200 ~l~~c~~~~~l~-----i~~p~L~~L~l~~~ 225 (430)
++.++.-. .+. -..++|+.|.+.++
T Consensus 121 ~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 121 YMSNNKIT-NWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp EESEEECC-CHHHHHHHTTTTTCSEEEECSC
T ss_pred ECCCCcCC-chhHHHHHhcCCCCCEEEecCC
Confidence 99876321 111 13578999998874
No 148
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.85 E-value=0.00019 Score=74.10 Aligned_cols=102 Identities=20% Similarity=0.144 Sum_probs=54.9
Q ss_pred CCcccccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE---EeCC
Q 014150 140 PSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN---IDAP 215 (430)
Q Consensus 140 p~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~---i~~p 215 (430)
+..+..++.|+.|+|++|.+.. +..+..+++|+.|+|+++.++ .+..-+..+++|+.|+|+++. +..+. -..+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCc-CCccChhhcCCC
Confidence 3344556778888888776654 334447778888888877765 234445677778888877654 21110 0123
Q ss_pred CcceEEEeccc-c--ceeeccCCCceEEEEEE
Q 014150 216 NLQFFDIGGVF-D--DVTFENTFHLALVSIGL 244 (430)
Q Consensus 216 ~L~~L~l~~~~-~--~~~~~~~p~L~~l~i~~ 244 (430)
+|+.|.+.++. . ...+.++++|+.|+++.
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence 45555554321 1 11244555566555543
No 149
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.71 E-value=0.0016 Score=54.12 Aligned_cols=81 Identities=20% Similarity=0.164 Sum_probs=58.4
Q ss_pred CCceEEEEEecCCCcccCCCc-ccccCceeEEEEeeeeecCC--CCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150 122 SCVKEFILEIWKGQRYKVPSS-LFLCQNLIHLELFNCLLKPP--STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 198 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~ 198 (430)
.+++++++..... ..+|.. +..+++|++|++++|.+... ..+..+++|+.|+|.++.++.- ....+..+++|+.
T Consensus 28 ~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 28 SSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQLKE 104 (177)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCcEEEeCCCcc--cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc-CHHHhhCCcccCE
Confidence 5677777764432 245544 35679999999999988652 3467899999999999987632 2334567889999
Q ss_pred eEeeccC
Q 014150 199 LTLMNFD 205 (430)
Q Consensus 199 L~l~~c~ 205 (430)
|.+.++.
T Consensus 105 L~l~~N~ 111 (177)
T 2o6r_A 105 LALDTNQ 111 (177)
T ss_dssp EECCSSC
T ss_pred EECcCCc
Confidence 9988753
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.69 E-value=0.0012 Score=61.22 Aligned_cols=99 Identities=18% Similarity=0.160 Sum_probs=51.5
Q ss_pred CCCcceEEEecc-c---cceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCcc-EEEEeeeeeehhhcc
Q 014150 214 APNLQFFDIGGV-F---DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIR-RLEIQSYFLKYLAIG 288 (430)
Q Consensus 214 ~p~L~~L~l~~~-~---~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~ 288 (430)
+++|+.+++.+. . +...|.++++|+++++... .... . ...+.++++|+ .+.+... +..+..
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I------~----~~aF~~~~~L~~~l~l~~~-l~~I~~- 290 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTI------G----QRVFSNCGRLAGTLELPAS-VTAIEF- 290 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEE------C----TTTTTTCTTCCEEEEECTT-CCEECT-
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--ccee------h----HHHhhCChhccEEEEEccc-ceEEch-
Confidence 456666666542 2 2334677888888877532 1000 0 12367888888 8888762 221111
Q ss_pred cCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEE
Q 014150 289 NVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEM 334 (430)
Q Consensus 289 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l 334 (430)
..-..+++|+.+.+...... .+ -...+.+|++|++++.
T Consensus 291 ----~aF~~c~~L~~l~l~~n~i~--~I--~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 291 ----GAFMGCDNLRYVLATGDKIT--TL--GDELFGNGVPSKLIYK 328 (329)
T ss_dssp ----TTTTTCTTEEEEEECSSCCC--EE--CTTTTCTTCCCCEEEC
T ss_pred ----hhhhCCccCCEEEeCCCccC--cc--chhhhcCCcchhhhcc
Confidence 11114567777776211110 00 0124678888888753
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.50 E-value=0.0018 Score=53.89 Aligned_cols=80 Identities=21% Similarity=0.189 Sum_probs=58.4
Q ss_pred CCceEEEEEecCCCcccC-CCcccccCceeEEEEeeeeecC-C-CCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150 122 SCVKEFILEIWKGQRYKV-PSSLFLCQNLIHLELFNCLLKP-P-STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 198 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~-~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~ 198 (430)
.+++.|++..... ..+ |..+..+++|+.|+|++|.+.. + ..|.++++|+.|+|+++.+..- ....+..+++|+.
T Consensus 33 ~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~ 109 (174)
T 2r9u_A 33 TDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLTH 109 (174)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCSE
T ss_pred CCCcEEEeCCCCc--cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee-CHHHhccccCCCE
Confidence 5778877754432 334 4455678999999999998876 3 3467899999999999987632 1234667889999
Q ss_pred eEeecc
Q 014150 199 LTLMNF 204 (430)
Q Consensus 199 L~l~~c 204 (430)
|.+.+.
T Consensus 110 L~L~~N 115 (174)
T 2r9u_A 110 IYLYNN 115 (174)
T ss_dssp EECCSS
T ss_pred EEeCCC
Confidence 998864
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.35 E-value=0.003 Score=52.24 Aligned_cols=80 Identities=20% Similarity=0.168 Sum_probs=57.2
Q ss_pred CCceEEEEEecCCCcccC-CCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150 122 SCVKEFILEIWKGQRYKV-PSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 198 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~ 198 (430)
..++.|++..... ..+ |..+..+++|+.|+|++|.+.. +..|..+++|+.|+|+++.+..- ....+..+++|+.
T Consensus 30 ~~l~~L~L~~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~ 106 (170)
T 3g39_A 30 TTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSLTH 106 (170)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCcC--CccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCCCE
Confidence 5677777654322 234 4445678999999999998875 33467899999999999987632 1234667888998
Q ss_pred eEeecc
Q 014150 199 LTLMNF 204 (430)
Q Consensus 199 L~l~~c 204 (430)
|.|.+.
T Consensus 107 L~L~~N 112 (170)
T 3g39_A 107 IWLLNN 112 (170)
T ss_dssp EECCSS
T ss_pred EEeCCC
Confidence 888864
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.32 E-value=0.0049 Score=58.70 Aligned_cols=33 Identities=18% Similarity=0.102 Sum_probs=18.2
Q ss_pred CceeEEEEeee-eecCCCCCCCCCCcceEEeeeE
Q 014150 147 QNLIHLELFNC-LLKPPSTFKGFRNLKSLDLQHI 179 (430)
Q Consensus 147 ~~L~~L~L~~~-~~~~~~~~~~~~~L~~L~L~~~ 179 (430)
.+|+.+.+... ......+|.+|++|+.++|..+
T Consensus 157 ~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n 190 (401)
T 4fdw_A 157 STVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKT 190 (401)
T ss_dssp CCCCEEECCTTCCEECSSTTTTCTTCCEEECTTS
T ss_pred CCceEEEeCCCccEehHHHhhCcccCCeeecCCC
Confidence 35666666542 1122345666777777777543
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.23 E-value=0.0017 Score=54.68 Aligned_cols=134 Identities=11% Similarity=-0.020 Sum_probs=78.1
Q ss_pred chHHHHhccCCCccEEEEeee-eeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150 260 CKLLRFFVHLPHIRRLEIQSY-FLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 338 (430)
Q Consensus 260 ~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 338 (430)
..+..++...++|++|+|+.+ .+...........+. ..++|++|+++.+..+...+..+...++..++|++|+|+.+.
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~-~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHH-hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 345667788888999998876 543211100000011 245788888866655555566677788888999999998875
Q ss_pred CCCcccccccceecccccccccCceEEEE--EeeecCccHHHHHHHHHccCCCcceEEEeecC
Q 014150 339 EETGIGVLTNFWEVDHWTSLFSQLRMVKI--VGISGIRSELEFIKFVLSNSPVLETMTIKPAS 399 (430)
Q Consensus 339 ~~~~~~~~~~~w~~~~~~~~~~~L~~v~i--~~~~~~~~e~~~~~~il~~~~~L~~l~i~~~~ 399 (430)
-...+.. .... .-...++|+++.+ .+-.-.......+...++..+.|+++.+..+.
T Consensus 105 i~~~g~~---~l~~--~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 105 ISGSGIL---ALVE--ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCHHHHH---HHHH--GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCHHHHH---HHHH--HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4310000 0000 0012357888888 43322233333334456677899999998776
No 155
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=95.89 E-value=0.0011 Score=68.40 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=43.0
Q ss_pred CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceE
Q 014150 122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT 200 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~ 200 (430)
..++.|++.... ...+|..++.+++|++|+|++|.+.. |..+.++++|+.|+|+++.++ .+..-+..+++|+.|.
T Consensus 224 ~~L~~L~Ls~n~--l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 224 QLWHALDLSNLQ--IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCEEECTTSC--CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEE
T ss_pred CCCcEEECCCCC--CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEE
Confidence 345555443222 22455555566666666666665543 334556666666666666654 2333345566666666
Q ss_pred eecc
Q 014150 201 LMNF 204 (430)
Q Consensus 201 l~~c 204 (430)
|.++
T Consensus 300 L~~N 303 (727)
T 4b8c_D 300 FFDN 303 (727)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6654
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.44 E-value=0.0065 Score=56.48 Aligned_cols=66 Identities=23% Similarity=0.214 Sum_probs=42.1
Q ss_pred ccCCCcccccCceeEEEEee-eeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150 137 YKVPSSLFLCQNLIHLELFN-CLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 204 (430)
Q Consensus 137 ~~lp~~~~~~~~L~~L~L~~-~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c 204 (430)
..+|. +..+++|+.|+|++ |.+.. +..|.++++|+.|+|+++.+..- ....+..+++|+.|+|++.
T Consensus 22 ~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 22 DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSS
T ss_pred CccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCC
Confidence 34666 66667777777775 66543 23466777777777777765432 1334566777777777764
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.32 E-value=0.0033 Score=56.03 Aligned_cols=80 Identities=21% Similarity=0.152 Sum_probs=49.5
Q ss_pred CCceEEEEEecCCCcc-cCCCcccccCceeEEEEeeeeecCCCCCCCCC--CcceEEeeeEEech------hhHHHHhhc
Q 014150 122 SCVKEFILEIWKGQRY-KVPSSLFLCQNLIHLELFNCLLKPPSTFKGFR--NLKSLDLQHITLSQ------DVFENLISS 192 (430)
Q Consensus 122 ~~l~~l~l~~~~~~~~-~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~--~L~~L~L~~~~~~~------~~l~~l~s~ 192 (430)
+.++.|.+........ .+|..+..+++|+.|+|++|.+.....+..+. +|++|+|.++.+.+ .-...++..
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~ 249 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRER 249 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHH
Confidence 4677777654332222 34455556788888888888776543333344 78888888877653 122456777
Q ss_pred CccccceEe
Q 014150 193 SPTLERLTL 201 (430)
Q Consensus 193 cp~Le~L~l 201 (430)
+|+|+.|+=
T Consensus 250 ~P~L~~LDg 258 (267)
T 3rw6_A 250 FPKLLRLDG 258 (267)
T ss_dssp CTTCCEESS
T ss_pred CcccCeECC
Confidence 888877753
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.18 E-value=0.011 Score=56.17 Aligned_cols=89 Identities=12% Similarity=0.113 Sum_probs=42.3
Q ss_pred ceeEEEEeee-eecCCCCCCCCCCcceEEeeeE--EechhhHHHHhhcCccccceEeeccCCceEEE---EeCCCcceEE
Q 014150 148 NLIHLELFNC-LLKPPSTFKGFRNLKSLDLQHI--TLSQDVFENLISSSPTLERLTLMNFDGFTHLN---IDAPNLQFFD 221 (430)
Q Consensus 148 ~L~~L~L~~~-~~~~~~~~~~~~~L~~L~L~~~--~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~---i~~p~L~~L~ 221 (430)
+|+.+.+..+ .-....+|.++ +|+.+.|... .+.. ..+.+|++|+.+.+.... +..+. +...+|+.+.
T Consensus 136 ~L~~i~l~~~i~~I~~~aF~~~-~L~~i~lp~~l~~I~~----~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~ 209 (401)
T 4fdw_A 136 QIAKVVLNEGLKSIGDMAFFNS-TVQEIVFPSTLEQLKE----DIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVL 209 (401)
T ss_dssp CCSEEECCTTCCEECTTTTTTC-CCCEEECCTTCCEECS----STTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEE
T ss_pred CccEEEeCCCccEECHHhcCCC-CceEEEeCCCccEehH----HHhhCcccCCeeecCCCc-ceEechhhEeecccCEEE
Confidence 5777776543 11223455553 5777776541 1222 235567777777775321 11111 1124555555
Q ss_pred Eecccc---ceeeccCCCceEEEE
Q 014150 222 IGGVFD---DVTFENTFHLALVSI 242 (430)
Q Consensus 222 l~~~~~---~~~~~~~p~L~~l~i 242 (430)
+..... ...|.++++|+.+.+
T Consensus 210 lp~~l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 210 LPVTLKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCTTCCEECTTTTTTCTTCCCEEC
T ss_pred eCCchheehhhHhhCCCCCCEEec
Confidence 543221 223445666666555
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.11 E-value=0.016 Score=53.74 Aligned_cols=78 Identities=19% Similarity=0.160 Sum_probs=48.5
Q ss_pred CCceEEEEEe-cCCCcccCCC-cccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCcccc
Q 014150 122 SCVKEFILEI-WKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLE 197 (430)
Q Consensus 122 ~~l~~l~l~~-~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le 197 (430)
.+++.|+|.. .. ...+|. .+..+++|+.|+|++|.+.. +..|.++++|+.|+|+++.+..-. ..++...+ |+
T Consensus 31 ~~L~~L~l~~~n~--l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~-L~ 106 (347)
T 2ifg_A 31 ENLTELYIENQQH--LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS-WKTVQGLS-LQ 106 (347)
T ss_dssp SCCSEEECCSCSS--CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC-STTTCSCC-CC
T ss_pred CCeeEEEccCCCC--CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC-HHHcccCC-ce
Confidence 3567776642 22 123443 35567888888888887654 345678888888888888765321 12233333 88
Q ss_pred ceEeec
Q 014150 198 RLTLMN 203 (430)
Q Consensus 198 ~L~l~~ 203 (430)
.|.|.+
T Consensus 107 ~l~l~~ 112 (347)
T 2ifg_A 107 ELVLSG 112 (347)
T ss_dssp EEECCS
T ss_pred EEEeeC
Confidence 888775
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.71 E-value=0.077 Score=50.14 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=14.3
Q ss_pred CCcceEEEeccc---cceeeccCCCceEEEEE
Q 014150 215 PNLQFFDIGGVF---DDVTFENTFHLALVSIG 243 (430)
Q Consensus 215 p~L~~L~l~~~~---~~~~~~~~p~L~~l~i~ 243 (430)
.+|+.+.+.... ....+.++..|+.+.+.
T Consensus 230 ~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~ 261 (394)
T 4fs7_A 230 TGVKNIIIPDSFTELGKSVFYGCTDLESISIQ 261 (394)
T ss_dssp CCCCEEEECTTCCEECSSTTTTCSSCCEEEEC
T ss_pred CCCceEEECCCceecccccccccccceeEEcC
Confidence 355555554322 12234456667666653
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=92.77 E-value=0.033 Score=49.55 Aligned_cols=59 Identities=27% Similarity=0.235 Sum_probs=36.7
Q ss_pred ccCceeEEEEeeeeecCCCC----CCCCCCcceEEeeeEEechh-hHHHHhhcCccccceEeeccC
Q 014150 145 LCQNLIHLELFNCLLKPPST----FKGFRNLKSLDLQHITLSQD-VFENLISSSPTLERLTLMNFD 205 (430)
Q Consensus 145 ~~~~L~~L~L~~~~~~~~~~----~~~~~~L~~L~L~~~~~~~~-~l~~l~s~cp~Le~L~l~~c~ 205 (430)
.+++|++|+|++|.+....+ +..+|+|+.|+|+++.+.+- .+.. +... .|++|.+.+.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~-l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGL-KLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG-GTTS-CCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh-cccC-CcceEEccCCc
Confidence 35778888888887765222 23678888888888877543 3332 2223 66666666543
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=86.84 E-value=1.1 Score=42.06 Aligned_cols=118 Identities=18% Similarity=0.203 Sum_probs=58.2
Q ss_pred CCCCCCCCcceEEeeeEE--echhhHHHHhhcCccccceEeeccCCceEEEE----eCCCcceEEEeccc---cceeecc
Q 014150 163 STFKGFRNLKSLDLQHIT--LSQDVFENLISSSPTLERLTLMNFDGFTHLNI----DAPNLQFFDIGGVF---DDVTFEN 233 (430)
Q Consensus 163 ~~~~~~~~L~~L~L~~~~--~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i----~~p~L~~L~l~~~~---~~~~~~~ 233 (430)
.+|.+|.+|+.+.+.... +.. ..+..|+.|+++.+.. .+..+.- .+.+|+.+.+-... +...|.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~I~~----~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~ 332 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVSIGT----GAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEGITQILDDAFAG 332 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCEECT----TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTT
T ss_pred ceeeecccccEEecccccceecC----cccccccccccccCCC--cccccCceeecCCCCcCEEEeCCcccEehHhHhhC
Confidence 456666777776664321 221 2244566776666642 1221111 13455555553322 2335678
Q ss_pred CCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEE
Q 014150 234 TFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSI 306 (430)
Q Consensus 234 ~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 306 (430)
|.+|+.+.+... ... + . ...+.+|++|+.+++.++....-.+ ..+.+|+.+.+
T Consensus 333 C~~L~~i~ip~s--v~~-----I-~----~~aF~~C~~L~~i~~~~~~~~~~~~--------~~~~~L~~i~i 385 (394)
T 4gt6_A 333 CEQLERIAIPSS--VTK-----I-P----ESAFSNCTALNNIEYSGSRSQWNAI--------STDSGLQNLPV 385 (394)
T ss_dssp CTTCCEEEECTT--CCB-----C-C----GGGGTTCTTCCEEEESSCHHHHHTC--------BCCCCC-----
T ss_pred CCCCCEEEECcc--cCE-----E-h----HhHhhCCCCCCEEEECCceeehhhh--------hccCCCCEEEe
Confidence 888988877311 000 0 0 2346889999999988654322111 13557777766
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=85.34 E-value=0.67 Score=38.89 Aligned_cols=21 Identities=5% Similarity=0.137 Sum_probs=15.0
Q ss_pred HHHHHHHhcCCCccEEEEeec
Q 014150 317 LAALCLLRSSPNLQELEMLAR 337 (430)
Q Consensus 317 ~~l~~ll~~~p~L~~L~l~~~ 337 (430)
..+...|+.-+.|++|+++++
T Consensus 147 ~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 147 MDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHhCCCcCeEeccCC
Confidence 456667777888888877654
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=84.78 E-value=0.25 Score=41.56 Aligned_cols=132 Identities=13% Similarity=0.089 Sum_probs=80.2
Q ss_pred chHHHHhccCCCccEEEEeee-eeehh---hcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEe
Q 014150 260 CKLLRFFVHLPHIRRLEIQSY-FLKYL---AIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEML 335 (430)
Q Consensus 260 ~~~~~~l~~~~~L~~L~l~~~-~~~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~ 335 (430)
..+..++.+-+.|++|.|+++ .+... ....... .-..|+.|+|..+..+......+...|+.-..|++|+|+
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~----~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~ 106 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAAC----NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVE 106 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHT----TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHh----hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecC
Confidence 345667777889999999864 33211 1111111 123688899866665666667788889999999999998
Q ss_pred ecCCCCcccccccceecccccccccCceEEEEEe----eecCccHHHHHHHHHccCCCcceEEEeecCCC
Q 014150 336 ARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVG----ISGIRSELEFIKFVLSNSPVLETMTIKPASLE 401 (430)
Q Consensus 336 ~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~----~~~~~~e~~~~~~il~~~~~L~~l~i~~~~~~ 401 (430)
.+.-...+.. ..-+ .. ..-+.|+.+.+.+ .-|...+.+++..+ +..+.|+++.+.+...+
T Consensus 107 ~N~Ig~~Ga~---ala~-aL-~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL-~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 107 SNFLTPELLA---RLLR-ST-LVTQSIVEFKADNQRQSVLGNQVEMDMMMAI-EENESLLRVGISFASME 170 (197)
T ss_dssp SSBCCHHHHH---HHHH-HT-TTTCCCSEEECCCCSSCCCCHHHHHHHHHHH-HHCSSCCEEECCCCCHH
T ss_pred CCcCCHHHHH---HHHH-HH-hhCCceeEEECCCCcCcCcCHHHHHHHHHHH-HhCCCcCeEeccCCCcc
Confidence 8764310000 0000 00 1235688888864 22445566777655 55578999998866533
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=80.83 E-value=4.2 Score=37.94 Aligned_cols=117 Identities=15% Similarity=0.230 Sum_probs=60.8
Q ss_pred cCceeEEEEeeeee-cCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEE----eCCCcceE
Q 014150 146 CQNLIHLELFNCLL-KPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI----DAPNLQFF 220 (430)
Q Consensus 146 ~~~L~~L~L~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i----~~p~L~~L 220 (430)
|..|+.+.+..... .....|..+++|+...+....+.+. .+..|..|+++.+.+ .+..+.- .+.+|+.+
T Consensus 252 ~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~----~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 252 CTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEK----TFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp CSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTT----TTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEE
T ss_pred cccceeEEcCCCcceeeccccccccccceeccCceeeccc----ccccccccccccccc--ccceechhhhcCCCCCCEE
Confidence 44555555443211 1123444555666555544443322 245677777777653 2222211 23566666
Q ss_pred EEeccc---cceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeee
Q 014150 221 DIGGVF---DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSY 280 (430)
Q Consensus 221 ~l~~~~---~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 280 (430)
.+-... +...|.+|.+|+.+.+... ... .-...+.+|++|+.+.+...
T Consensus 326 ~lp~~v~~I~~~aF~~c~~L~~i~lp~~--l~~----------I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 326 DLPYLVEEIGKRSFRGCTSLSNINFPLS--LRK----------IGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCCTTCCEECTTTTTTCTTCCEECCCTT--CCE----------ECTTTBTTCTTCCEEEEEGG
T ss_pred EeCCcccEEhHHhccCCCCCCEEEECcc--ccE----------ehHHHhhCCCCCCEEEECCC
Confidence 664322 2335677888888876321 000 00133688999999999754
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=76.93 E-value=2.3 Score=39.86 Aligned_cols=122 Identities=16% Similarity=0.191 Sum_probs=64.2
Q ss_pred HhhcCccccceEeeccCCceEEEE----eCCCcceEEEeccc---cceeeccCCCceEEEEEEEeeccccccCCCCCcch
Q 014150 189 LISSSPTLERLTLMNFDGFTHLNI----DAPNLQFFDIGGVF---DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCK 261 (430)
Q Consensus 189 l~s~cp~Le~L~l~~c~~~~~l~i----~~p~L~~L~l~~~~---~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~ 261 (430)
.+.+|..|+.+.+.+- +..+.- .+++|+.+.+.... +...|.+|.+|+.+.+...-. ..
T Consensus 260 aF~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~------------~I 325 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGIT------------QI 325 (394)
T ss_dssp TTTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCC------------EE
T ss_pred eeeecccccEEecccc--cceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCccc------------Ee
Confidence 4678999999988632 211111 24667777665432 334577899999998742100 00
Q ss_pred HHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeec
Q 014150 262 LLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLAR 337 (430)
Q Consensus 262 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 337 (430)
-...+.+|.+|+.+.|-... .. .+.. .-..|.+|+.+.+... .. .. .-+..|.+|+.+.+...
T Consensus 326 ~~~aF~~C~~L~~i~ip~sv-~~--I~~~---aF~~C~~L~~i~~~~~---~~---~~-~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 326 LDDAFAGCEQLERIAIPSSV-TK--IPES---AFSNCTALNNIEYSGS---RS---QW-NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CTTTTTTCTTCCEEEECTTC-CB--CCGG---GGTTCTTCCEEEESSC---HH---HH-HTCBCCCCC--------
T ss_pred hHhHhhCCCCCCEEEECccc-CE--EhHh---HhhCCCCCCEEEECCc---ee---eh-hhhhccCCCCEEEeCCC
Confidence 01236889999999996432 11 1111 0114668888777321 11 12 34567899999987653
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=73.82 E-value=2.4 Score=32.77 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=30.8
Q ss_pred cCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEe
Q 014150 138 KVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITL 181 (430)
Q Consensus 138 ~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~ 181 (430)
.+|..+- ++|+.|+|++|.+.. +..|..+++|+.|+|.++.+
T Consensus 24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4554322 468899999998765 34567889999999998875
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=53.19 E-value=6.9 Score=36.12 Aligned_cols=73 Identities=16% Similarity=0.255 Sum_probs=46.3
Q ss_pred cccCceeEEEEeee-eecCCCCCCCCCCcceEEeeeEE---echhhHHHHhhcCccccceEeeccCCceEEEE----eCC
Q 014150 144 FLCQNLIHLELFNC-LLKPPSTFKGFRNLKSLDLQHIT---LSQDVFENLISSSPTLERLTLMNFDGFTHLNI----DAP 215 (430)
Q Consensus 144 ~~~~~L~~L~L~~~-~~~~~~~~~~~~~L~~L~L~~~~---~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i----~~p 215 (430)
..|.+|+.+.+... .-.....|.+|++|+.+.+.... +.+. .+.+|.+|+++.|.. .++.+.- .+.
T Consensus 260 ~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~----aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~ 333 (379)
T 4h09_A 260 QNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPR----VFMDCVKLSSVTLPT--ALKTIQVYAFKNCK 333 (379)
T ss_dssp TTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTT----TTTTCTTCCEEECCT--TCCEECTTTTTTCT
T ss_pred ceeehhccccccccceeccccccccccccccccccccccceehhh----hhcCCCCCCEEEcCc--cccEEHHHHhhCCC
Confidence 35788999988653 22234578889999999997542 3332 367899999998863 2333321 235
Q ss_pred CcceEEE
Q 014150 216 NLQFFDI 222 (430)
Q Consensus 216 ~L~~L~l 222 (430)
+|+.+.+
T Consensus 334 ~L~~i~i 340 (379)
T 4h09_A 334 ALSTISY 340 (379)
T ss_dssp TCCCCCC
T ss_pred CCCEEEE
Confidence 5665554
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=34.72 E-value=23 Score=32.51 Aligned_cols=95 Identities=16% Similarity=0.161 Sum_probs=57.7
Q ss_pred ccccCceeEEEEeee-eecCCCCCCCCCCcceEEeeeEE--echhhHHHHhhcCccccceEeeccCCceEEEE----eCC
Q 014150 143 LFLCQNLIHLELFNC-LLKPPSTFKGFRNLKSLDLQHIT--LSQDVFENLISSSPTLERLTLMNFDGFTHLNI----DAP 215 (430)
Q Consensus 143 ~~~~~~L~~L~L~~~-~~~~~~~~~~~~~L~~L~L~~~~--~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i----~~p 215 (430)
...|..|+.+.+... .-.....|.++.+|+.+.+...- +. ...+.+|++|+++.+.+. .+..+.- .+.
T Consensus 236 f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i~~i~----~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 236 FYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKVKTVP----YLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCV 310 (379)
T ss_dssp TTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCCSEEC----TTTTTTCTTCCEEEECCT-TCCEECTTTTTTCT
T ss_pred ccCCccceEEEcCCCccEeCccccceeehhccccccccceecc----cccccccccccccccccc-ccceehhhhhcCCC
Confidence 356789999998654 22234677889999999986431 22 234678999999998643 2322221 246
Q ss_pred CcceEEEeccc---cceeeccCCCceEEEE
Q 014150 216 NLQFFDIGGVF---DDVTFENTFHLALVSI 242 (430)
Q Consensus 216 ~L~~L~l~~~~---~~~~~~~~p~L~~l~i 242 (430)
+|+++.+-... +...|.+|.+|+.+.+
T Consensus 311 ~L~~i~lp~~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 311 KLSSVTLPTALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TCCEEECCTTCCEECTTTTTTCTTCCCCCC
T ss_pred CCCEEEcCccccEEHHHHhhCCCCCCEEEE
Confidence 77777664322 2223455555655544
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.09 E-value=48 Score=23.89 Aligned_cols=13 Identities=15% Similarity=0.429 Sum_probs=6.3
Q ss_pred CCCCCCCcceEEe
Q 014150 164 TFKGFRNLKSLDL 176 (430)
Q Consensus 164 ~~~~~~~L~~L~L 176 (430)
+|.+|.+|+.+.|
T Consensus 15 aF~~c~~L~~i~i 27 (100)
T 2lz0_A 15 LFAGNTVIREITV 27 (100)
T ss_dssp TTTTCTTCCCEEE
T ss_pred HhcCCCCCcEEEc
Confidence 3444555555544
No 171
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.60 E-value=56 Score=23.83 Aligned_cols=41 Identities=7% Similarity=0.011 Sum_probs=26.2
Q ss_pred CCCcceEEEeecCCCchhHHHHHhhhcccccCCcEEEEeCC
Q 014150 387 SPVLETMTIKPASLEGGWDLIKELLRFRRASARAEIIYLDP 427 (430)
Q Consensus 387 ~~~L~~l~i~~~~~~~~~~~~~~l~~~~r~s~~~~~~~~~~ 427 (430)
.++.+++.+.+...++-.++..+|-+..=--..+.+||.||
T Consensus 43 lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 43 FKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp ETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred cCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 46777777777766666666666655543334677888765
No 172
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=21.06 E-value=1e+02 Score=18.53 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=16.0
Q ss_pred CCCCcccCCCcHHHHHHHHcCC
Q 014150 14 ETELDRLSSLPAHVIDQILSQL 35 (430)
Q Consensus 14 ~~~~d~is~LPdelL~~Ils~L 35 (430)
+-+.+=|+.||.||-..|++--
T Consensus 15 ~VD~eVF~~LP~dIQ~Ells~~ 36 (48)
T 2kwv_A 15 GVDQEVFKQLPADIQEEILSGK 36 (48)
T ss_dssp TCCGGGTTTSCHHHHHHHTTCC
T ss_pred CCCHHHHHHCcHHHHHHHHhcc
Confidence 3445568889988888888743
Done!