BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014151
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RH9|A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon
Esculentum (Tomato)
Length = 373
Score = 307 bits (787), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 157/375 (41%), Positives = 228/375 (60%), Gaps = 7/375 (1%)
Query: 41 FVTRNGTHFMLDGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFN 100
FV +GTHF L+GK+LY+NG+N+YWLM A +R +V Q +K + V RTWAF+
Sbjct: 6 FVYTDGTHFALNGKSLYINGFNAYWLMYIAYDPSTRIKVTNTFQQASKYKMNVARTWAFS 65
Query: 101 DGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEE 160
GG LQ +PG ++E++F+ LD VI EA+K G+ L++SLVNN A+GGK QYV WA +
Sbjct: 66 HGGSRPLQSAPGVYNEQMFQGLDFVISEAKKYGIHLIMSLVNNWDAFGGKKQYVEWAVQR 125
Query: 161 GIGIXXXXXXXXXXXXIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSD 220
G + + ++K+ VK VLTR NTIT V Y++DPTI +WELINEPRC SD
Sbjct: 126 GQKL-TSDDDFFTNPMVKGFYKNNVKVVLTRVNTITKVAYKDDPTILSWELINEPRCPSD 184
Query: 221 PSGDTLQDWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPEMWASALGSDFIRN 280
SG T Q+W+ EM+ ++KSID HL+ +GLEGFYG + NP + G++FI N
Sbjct: 185 LSGKTFQNWVLEMAGYLKSIDSNHLLEIGLEGFYGNDMRQ---YNPNSY--IFGTNFISN 239
Query: 281 SNNDNIDFASVHIYPDHWFHDLEFEDDLKFVTKWMLSHIEDGDKELNKPVFFTEYGLSNL 340
+ IDF ++H+YP+ W L E K+ ++W+ HI+D K L KP+ E+G S
Sbjct: 240 NQVQGIDFTTIHMYPNQWLPGLTQEAQDKWASQWIQVHIDD-SKMLKKPLLIAEFGKSTK 298
Query: 341 IKGFEPSLRDKLYKTILDIVYKSAKRKRSGAGALIWQLFVEGMEEYNDDFGIVPWERTST 400
G+ + RD ++ I ++ AK G L WQ+ +GM ++D + +V E ST
Sbjct: 299 TPGYTVAKRDNYFEKIYGTIFNCAKSGGPCGGGLFWQVLGQGMSSFDDGYQVVLQESPST 358
Query: 401 YKLLTEQSCGLGRIS 415
+++ QS L ++S
Sbjct: 359 SRVILLQSLRLSKLS 373
>pdb|3PZ9|A Chain A, Native Structure Of Endo-1,4-Beta-D-Mannanase From
Thermotoga Petrophila Rku-1
pdb|3PZG|A Chain A, I222 Crystal Form Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1
pdb|3PZI|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Beta-D-Glucose
pdb|3PZM|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Three Glycerol Molecules
pdb|3PZN|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Citrate And Glycerol
pdb|3PZO|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Three Maltose Molecules
pdb|3PZQ|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Maltose And Glycerol
Length = 383
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 123/371 (33%), Positives = 181/371 (48%), Gaps = 41/371 (11%)
Query: 40 GFVTRNGTHFMLDGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAF 99
G V R G+H ML+GK G N+Y++ H S + ++L++ MG+ V R W F
Sbjct: 13 GLVPR-GSH-MLNGKEFRFIGSNNYYM-----HYKSNRMIDSVLESARDMGIKVLRIWGF 65
Query: 100 NDG------GYNSLQISPGQFD--------ERVFKALDHVIVEARKNGVRLLLSLVNNLQ 145
DG + PG F + F+ LD+ I +A++ G++L++ LVNN
Sbjct: 66 LDGESYCRDKNTYMHPEPGVFGVPEGISNAQNGFERLDYTIAKAKELGIKLIIVLVNNWD 125
Query: 146 AYGGKTQYVNWAWEEGIGIXXXXXXXXXXXXIHKYFKHYVKTVLTRKNTITGVEYRNDPT 205
+GG QYV W I + +K YV ++ N TGV YR +PT
Sbjct: 126 DFGGMNQYVRWF------GGTHHDDFYRDERIKEEYKKYVSFLINHVNVYTGVPYREEPT 179
Query: 206 IFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVN 265
I AWEL NE RC +D SG+TL +W+ EMS+++KS+D HLV VG EGF+ +
Sbjct: 180 IMAWELANELRCETDKSGNTLVEWVKEMSSYIKSLDPNHLVAVGDEGFFSNYEGFKPYGG 239
Query: 266 PEMWA--SALGSDFIRNSNNDNIDFASVHIYPDHWFHDLEFEDDLKFVTKWMLSHIEDGD 323
WA G D+ + + + +DF + H+YP HW + E+ ++ KW+ HI+
Sbjct: 240 EAEWAYNGWSGVDWKKLLSIETVDFGTFHLYPSHW--GVSPENYAQWGAKWIEDHIKIA- 296
Query: 324 KELNKPVFFTEYGLSNLIKGFEPSLRDKLYKTILDIVYKSAKRKRSGAGALIWQLFVEGM 383
KE+ KPV EYG+ P R +Y+ D+VY G GA+ W L G
Sbjct: 297 KEIGKPVVLEEYGIPKSA----PVNRTAIYRLWNDLVYDLG-----GDGAMFWMLAGIGE 347
Query: 384 EEYNDDFGIVP 394
D+ G P
Sbjct: 348 GSDRDERGYYP 358
>pdb|4AWE|A Chain A, The Crystal Structure Of Chrysonilia Sitophila
Endo-Beta-D- 1,4-Mannanase
Length = 387
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 162/374 (43%), Gaps = 67/374 (17%)
Query: 40 GFVTRNGTHFMLDGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAF 99
GFVT G HF LDGK Y G N+Y+ + D + + A GLTV RTW F
Sbjct: 5 GFVTTEGDHFKLDGKDFYFAGSNAYYFPFNDQPDIEKG-----MTAARAAGLTVFRTWGF 59
Query: 100 NDGGYNSLQISPGQFDER--------VFK-------------ALDHVIVEARKNGVRLLL 138
ND + Q+ VF+ D V+ A K G++L++
Sbjct: 60 NDKNRTYIPTGLPQYGNEGAGDPTNTVFQWFEADGTQTIDVSPFDKVVDSATKTGIKLIV 119
Query: 139 SLVNNLQAYGGKTQY-VNWAWEEGIGIXXXXXXXXXXXXIHKYFKHYVKTVLTRKNTITG 197
+L NN YGG Y VN I + FK YVK ++TR
Sbjct: 120 ALTNNWADYGGMDVYTVNLG-------GKYHDDFYTVPKIKEAFKRYVKAMVTR------ 166
Query: 198 VEYRNDPTIFAWELINEPRCMSDPS-----------GDTLQDWIDEMSAFVKSIDKKHLV 246
YR+ I AWEL NE RC +D + +T+ WI+EMSA+VKS+D HLV
Sbjct: 167 --YRDSEAILAWELANEARCGADGTRNLPRSEKGCTTETVTGWIEEMSAYVKSLDGNHLV 224
Query: 247 TVGLEGFYGPKSPKRLTVNPEMWASALGSDFIRNSNNDNIDFASVHIYPDHWFHDLEFED 306
T G EG + + + A G DF R N+DF ++H+YPD W +E+ +
Sbjct: 225 TWGGEGGFNRGEDEE----DGFYNGADGGDFDRELGLRNVDFGTMHLYPDWWSKSIEWSN 280
Query: 307 DLKFVTKWMLSHIEDGDKELNKPVFFTEYGLSNLIKGFEPSLRDKLYKTILDIV--YKSA 364
+W+ H G + NKPV EYG KG L +T L++V ++
Sbjct: 281 ------QWIHDHAASG-RAANKPVVLEEYGWMT-DKGRLDQLGQVKNETRLEVVGGWQKI 332
Query: 365 KRKRSGAGALIWQL 378
+ AG + WQ
Sbjct: 333 AIQEKLAGDMYWQF 346
>pdb|1QNO|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNP|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNQ|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNR|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNS|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
Length = 344
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 109/386 (28%), Positives = 163/386 (42%), Gaps = 72/386 (18%)
Query: 41 FVTRNGTHFMLDGKALYVNGWNSYW---LMDHAVHDYSRARVGAMLQAGAKMGLTVCRTW 97
FVT +GT F +DGK Y G N YW L +HA D + + + + GL V R W
Sbjct: 4 FVTISGTQFNIDGKVGYFAGTNCYWCSFLTNHADVDSTFSHI-------SSSGLKVVRVW 56
Query: 98 AFNDGGYNSLQISPGQF--------------DERVFKALDHVIVEARKNGVRLLLSLVNN 143
FND + Q SPGQ + LD+V+ A ++ ++L++ VNN
Sbjct: 57 GFND---VNTQPSPGQIWFQKLSATGSTINTGADGLQTLDYVVQSAEQHNLKLIIPFVNN 113
Query: 144 LQAYGGKTQYVNWAWEEGIGIXXXXXXXXXXXXIHKYFKHYVKTVLTRKNTITGVEYRND 203
YGG YVN ++ YV+ V++R Y N
Sbjct: 114 WSDYGGINAYVN-------AFGGNATTWYTNTAAQTQYRKYVQAVVSR--------YANS 158
Query: 204 PTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLT 263
IFAWEL NEPRC + S D + W +S +VKS+D HLVT+G EG
Sbjct: 159 TAIFAWELGNEPRC-NGCSTDVIVQWATSVSQYVKSLDSNHLVTLGDEGLGLSTGDGAY- 216
Query: 264 VNPEMWASALGSDFIRNSNNDNIDFASVHIYPDHWFHDLEFEDDLKFVTKWMLSHIEDGD 323
P + G+DF +N ++DF + H+YPD W + + + W+ +H
Sbjct: 217 --PYTYGE--GTDFAKNVQIKSLDFGTFHLYPDSWGTNYTWGN------GWIQTHAA-AC 265
Query: 324 KELNKPVFFTEYGLSNLIKGFEPSLRDKLYKTILDIVYKSAKRKRSGAGALIWQ---LFV 380
KP F EYG P + ++T ++ R G + WQ F
Sbjct: 266 LAAGKPCVFEEYGAQQ-----NPCTNEAPWQT-------TSLTTRGMGGDMFWQWGDTFA 313
Query: 381 EGMEEYNDDFGIVPWERTSTYKLLTE 406
G + +D + + W +S ++ L +
Sbjct: 314 NGAQSNSDPYTV--WYNSSNWQCLVK 337
>pdb|1UUQ|A Chain A, Exo-mannosidase From Cellvibrio Mixtus
pdb|1UZ4|A Chain A, Common Inhibition Of Beta-Glucosidase And Beta-Mannosidase
By Isofagomine Lactam Reflects Different Conformational
Intineraries For Glucoside And Mannoside Hydrolysis
Length = 440
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 111/464 (23%), Positives = 183/464 (39%), Gaps = 84/464 (18%)
Query: 1 MVAAGNGLFFPIIGFASCVAFIYMSFGGLNVSYPKEPEMGFVTRNGTHFMLDGKALYVNG 60
MVA N P A+ A + FV NG HF L GK + G
Sbjct: 1 MVAESNSAVAPTANVATSPAHEH-----------------FVRVNGGHFELQGKPYVITG 43
Query: 61 WN----SYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISP----- 111
N +Y + V D R R+ L +G+ R A ++ + + P
Sbjct: 44 VNMWYAAYLGAPNEVGD--RDRLAKELDNLKAIGVNNLRVLAVSEKSEINSAVKPAVTNG 101
Query: 112 -GQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGI-------- 162
G +DE + + LD+++VE K + ++L N Q GG TQY+ W E +
Sbjct: 102 FGNYDETLLQGLDYLLVELAKRDMTVVLYFNNFWQWSGGMTQYMAWIEGEPVQDPNVTNE 161
Query: 163 --GIXXXXXXXXXXXXIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRC-MS 219
+ ++ ++ ++TR N+I G Y +D TI +W+L NEPR S
Sbjct: 162 WEAFMAKSASFYRSEKAQQEYRKTLEKIITRVNSINGKAYVDDATIMSWQLANEPRPGNS 221
Query: 220 DPSGDTLQ---DWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPEMWASALGSD 276
+ + Q DW+ +A++K++D HLV+ G EG G + ++
Sbjct: 222 QTTAEEKQIYIDWVHAAAAYIKTLDAHHLVSSGSEGEMGSVNDMQV-------------- 267
Query: 277 FIRNSNNDNIDFASVHIYPDHWFHDLEFEDDLKFVTKW----------MLSHIEDGDKEL 326
FI +ID+ + H+ W + + D K W M +HI D K+L
Sbjct: 268 FIDAHATPDIDYLTYHM----WIRNWSWFDKTKPAETWPSAWEKAQNYMRAHI-DVAKQL 322
Query: 327 NKPVFFTEYGLSNLIKGFE----PSLRDKLYKTILDIVYKSAKRKRSGAGALIWQLFVEG 382
NKP+ E+GL + + RD ++ + +++ S ++ AG IW G
Sbjct: 323 NKPLVLEEFGLDRDMGSYAMDSTTEYRDNYFRGVFELMLASLEQGEPSAGYNIWAWNGYG 382
Query: 383 M--------EEYNDDFGIVPWERTSTYKLLTEQSCGLGRISRLN 418
+E +D G P E Y + + + + N
Sbjct: 383 RTTRANYWWQEGDDFMGDPPQEEQGMYGVFDTDTSTIAIMKEFN 426
>pdb|1BHG|A Chain A, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|1BHG|B Chain B, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|3HN3|A Chain A, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|B Chain B, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|D Chain D, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|E Chain E, Human Beta-glucuronidase At 1.7 A Resolution
Length = 613
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 39/191 (20%)
Query: 201 RNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSPK 260
+N P + W + NEP + +G L+ I A KS+D VT
Sbjct: 418 KNHPAVVMWSVANEPASHLESAGYYLKMVI----AHTKSLDPSRPVTF------------ 461
Query: 261 RLTVNPEMWASALGSDFIRNSNNDNIDFASVHIYPDHWFHDLEFEDDLKFVTKWMLSHIE 320
V+ +A+ G+ ++ D I S + W+HD L+ + + + E
Sbjct: 462 ---VSNSNYAADKGAPYV-----DVICLNSYY----SWYHDY---GHLELIQLQLATQFE 506
Query: 321 DGDKELNKPVFFTEYGLSNLIKGF--EPSL--RDKLYKTILDIVY--KSAKRKRSGAGAL 374
+ K+ KP+ +EYG + I GF +P L ++ K++L+ + KR++ G L
Sbjct: 507 NWYKKYQKPIIQSEYG-AETIAGFHQDPPLMFTEEYQKSLLEQYHLGLDQKRRKYVVGEL 565
Query: 375 IWQLFVEGMEE 385
IW F + M E
Sbjct: 566 IWN-FADFMTE 575
>pdb|3AZR|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellobiose
pdb|3AZR|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellobiose
pdb|3AZS|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Mannotriose
pdb|3AZS|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Mannotriose
pdb|3AZT|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|C Chain C, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|D Chain D, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
Length = 317
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 200 YRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSP 259
Y++ P +E++NEP P + + ++E ++SIDKKH + +G + G +
Sbjct: 122 YKDYPETLFFEILNEPHGNLTP--EKWNELLEEALKVIRSIDKKHTIIIGTAEWGGISAL 179
Query: 260 KRLTV 264
++L+V
Sbjct: 180 EKLSV 184
>pdb|3MMU|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|E Chain E, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|F Chain F, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|G Chain G, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|H Chain H, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3AMC|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And DimerAU
pdb|3AMC|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And DimerAU
pdb|3AMD|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|C Chain C, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|D Chain D, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
Length = 317
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 200 YRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSP 259
Y++ P +E++NEP P + + ++E ++SIDKKH + +G + G +
Sbjct: 122 YKDYPETLFFEILNEPHGNLTP--EKWNELLEEALKVIRSIDKKHTIIIGTAEWGGISAL 179
Query: 260 KRLTV 264
++L+V
Sbjct: 180 EKLSV 184
>pdb|3AOF|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
pdb|3AOF|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
Length = 317
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 200 YRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSP 259
Y++ P +E++N P P + + ++E ++SIDKKH + +G + G +
Sbjct: 122 YKDYPETLFFEILNAPHGNLTP--EKWNELLEEALKVIRSIDKKHTIIIGTAEWGGISAL 179
Query: 260 KRLTV 264
++L+V
Sbjct: 180 EKLSV 184
>pdb|3AMG|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
pdb|3AMG|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
Length = 317
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 200 YRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSP 259
Y++ P +E++N P P + + ++E ++SIDKKH + +G + G +
Sbjct: 122 YKDYPETLFFEILNAPHGNLTP--EKWNELLEEALKVIRSIDKKHTIIIGTAEWGGISAL 179
Query: 260 KRLTV 264
++L+V
Sbjct: 180 EKLSV 184
>pdb|3NDY|A Chain A, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
pdb|3NDY|B Chain B, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
pdb|3NDY|C Chain C, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
pdb|3NDY|D Chain D, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
pdb|3NDZ|A Chain A, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
Bound To Cellotriose
pdb|3NDZ|B Chain B, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
Bound To Cellotriose
pdb|3NDZ|C Chain C, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
Bound To Cellotriose
pdb|3NDZ|D Chain D, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
Bound To Cellotriose
Length = 345
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 185 VKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKH 244
VK LT+ T ++ +E +NEPR P G +LQ W + +++ +
Sbjct: 120 VKAQLTKVWTQIANNFKKYGDHLIFETMNEPR----PVGASLQ-WTGGSYENREVVNRYN 174
Query: 245 LVTVGLEGFYGPKSPKRLTVNPEMWASALGSDF--IRNSNNDNIDFASVHIYPDHWF 299
L V G + R + P + ASA+ + + NND+ S+H+Y ++F
Sbjct: 175 LTAVNAIRATGGNNATRYIMVPTLAASAMSTTINDLVIPNNDSKVIVSLHMYSPYFF 231
>pdb|3TTS|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTY|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
Length = 675
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 11/106 (10%)
Query: 265 NPEMWASALGSDFIRNSNNDNIDFASVHIYPDHWFHDLEFEDDLKFVTKWMLSHIEDGDK 324
NPE W A + +R N ID A+V+++ W D++ + W+ IE
Sbjct: 16 NPEQWDKATMEEDMRMFNLAGIDVATVNVF--SWAKIQ--RDEVSYDFTWLDDIIE---- 67
Query: 325 ELNKPVFFTEYGLSNLIKGFEPSLRDKLYKTILDIVYKSAKRKRSG 370
L K + S G P+ K Y +L + Y+ KRK G
Sbjct: 68 RLTKENIYLCLATST---GAHPAWMAKKYPDVLRVDYEGRKRKFGG 110
>pdb|3AF5|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404
From Pyrococcus Horikoshii
pdb|3AF6|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404
From Pyrococcus Horikoshii Complexed With Rna-Analog
Length = 651
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 289 ASVHIYPDHWFHDLEFEDDLKFVTKWMLSHIEDGDKELNKPVFFTEYGLSNLIKGFEPSL 348
A VH++ + H++ D KF+ +L L V + YG +N I+
Sbjct: 349 AIVHLHIGNGLHNIAITGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQ----MP 404
Query: 349 RDKLYKTILDIVYKSAKRKRSGAGALIWQLFVEGMEE 385
R++ K ++++++ + KR G LI + V +E
Sbjct: 405 REEAEKRLIEVIHNTIKR---GGKVLIPAMAVGRAQE 438
>pdb|2R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium (Oxidized)
pdb|2R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium (Oxidized)
pdb|1R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium
pdb|1R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium
pdb|2BQ1|I Chain I, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
pdb|2BQ1|J Chain J, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
Length = 319
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 177 IHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELI-----NEPRCMSDPSGDTLQDWID 231
+H Y+ Y + +K ++ +E R + +FA +L+ NE R +T W++
Sbjct: 194 VHGYYIGYKYQIALQK--LSAIE-REELKLFALDLLMELYDNEIRYTEALYAET--GWVN 248
Query: 232 EMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPEMWAS 271
++ AF+ K L+ +G E + P+ VNP + A+
Sbjct: 249 DVKAFLCYNANKALMNLGYEALFPPEMAD---VNPAILAA 285
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,120,918
Number of Sequences: 62578
Number of extensions: 617139
Number of successful extensions: 1392
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1357
Number of HSP's gapped (non-prelim): 21
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)