Query 014151
Match_columns 430
No_of_seqs 219 out of 1994
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 02:20:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014151.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014151hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00150 Cellulase: Cellulase 100.0 2.1E-29 4.6E-34 243.7 25.0 265 52-381 4-280 (281)
2 COG3934 Endo-beta-mannanase [C 100.0 2.5E-29 5.4E-34 247.0 9.4 295 49-400 4-309 (587)
3 PRK10150 beta-D-glucuronidase; 99.9 4.8E-25 1.1E-29 235.8 30.3 289 37-396 271-578 (604)
4 PF02836 Glyco_hydro_2_C: Glyc 99.9 7.4E-22 1.6E-26 193.7 23.2 158 42-250 1-158 (298)
5 TIGR03356 BGL beta-galactosida 99.9 7.4E-21 1.6E-25 194.7 21.4 279 75-391 52-403 (427)
6 PRK09593 arb 6-phospho-beta-gl 99.9 2.6E-20 5.6E-25 192.6 23.0 305 75-416 71-471 (478)
7 PF02449 Glyco_hydro_42: Beta- 99.9 2.2E-20 4.7E-25 188.9 20.2 271 75-397 8-354 (374)
8 PLN02998 beta-glucosidase 99.9 2.8E-20 6.1E-25 192.7 21.3 306 75-418 80-488 (497)
9 PRK09589 celA 6-phospho-beta-g 99.9 7.4E-20 1.6E-24 189.2 24.2 307 75-418 65-472 (476)
10 PRK10340 ebgA cryptic beta-D-g 99.9 6E-20 1.3E-24 205.3 25.3 236 37-383 313-550 (1021)
11 PLN02814 beta-glucosidase 99.9 1.2E-19 2.6E-24 188.3 24.7 308 75-420 75-485 (504)
12 PRK15014 6-phospho-beta-glucos 99.8 8.8E-20 1.9E-24 188.5 22.9 307 75-418 67-473 (477)
13 TIGR01233 lacG 6-phospho-beta- 99.8 9.7E-20 2.1E-24 188.0 21.9 305 75-416 51-462 (467)
14 PRK13511 6-phospho-beta-galact 99.8 8E-20 1.7E-24 189.0 21.2 306 75-417 52-465 (469)
15 PRK09525 lacZ beta-D-galactosi 99.8 2.4E-19 5.2E-24 200.2 25.8 244 38-383 330-576 (1027)
16 PLN02849 beta-glucosidase 99.8 1.7E-19 3.6E-24 187.2 21.5 303 75-415 77-480 (503)
17 PRK09852 cryptic 6-phospho-bet 99.8 3.6E-19 7.9E-24 183.6 21.9 306 75-417 69-468 (474)
18 COG2723 BglB Beta-glucosidase/ 99.8 1E-18 2.2E-23 175.6 20.3 303 76-419 58-454 (460)
19 PF00232 Glyco_hydro_1: Glycos 99.8 5.6E-21 1.2E-25 197.6 3.7 303 75-414 56-449 (455)
20 PF07745 Glyco_hydro_53: Glyco 99.6 1.9E-14 4E-19 141.4 21.1 242 79-377 26-295 (332)
21 COG3250 LacZ Beta-galactosidas 99.6 4.1E-15 8.8E-20 160.9 17.9 155 37-252 279-435 (808)
22 PF01301 Glyco_hydro_35: Glyco 99.6 4.5E-14 9.7E-19 139.4 18.0 168 48-243 1-173 (319)
23 PLN03059 beta-galactosidase; P 99.6 9.4E-14 2E-18 148.8 21.4 183 41-247 29-219 (840)
24 KOG0626 Beta-glucosidase, lact 99.6 1.1E-12 2.3E-17 133.4 23.8 321 75-429 89-523 (524)
25 PF03198 Glyco_hydro_72: Gluca 99.5 7.8E-13 1.7E-17 126.9 18.7 235 36-341 5-252 (314)
26 PF13204 DUF4038: Protein of u 99.5 8.8E-13 1.9E-17 128.6 17.5 167 46-250 2-186 (289)
27 smart00633 Glyco_10 Glycosyl h 99.5 2.3E-12 5E-17 123.6 19.1 220 104-387 3-233 (254)
28 PF12876 Cellulase-like: Sugar 99.4 5.9E-13 1.3E-17 106.5 6.3 75 200-294 5-88 (88)
29 COG2730 BglC Endoglucanase [Ca 99.4 3.2E-11 6.9E-16 123.3 17.9 115 78-217 74-193 (407)
30 KOG0496 Beta-galactosidase [Ca 99.2 1.1E-10 2.4E-15 120.8 13.5 155 39-216 17-176 (649)
31 COG3867 Arabinogalactan endo-1 99.2 4.5E-09 9.7E-14 99.1 20.7 250 77-378 63-342 (403)
32 COG1874 LacA Beta-galactosidas 99.2 3.3E-10 7.1E-15 120.1 14.1 175 45-242 4-191 (673)
33 PF00331 Glyco_hydro_10: Glyco 99.0 2.5E-09 5.3E-14 106.0 11.0 244 85-387 29-292 (320)
34 PF01229 Glyco_hydro_39: Glyco 98.8 1.3E-07 2.9E-12 99.0 16.9 274 76-396 38-346 (486)
35 KOG2230 Predicted beta-mannosi 98.8 8.3E-08 1.8E-12 97.4 13.8 118 49-217 330-447 (867)
36 COG3693 XynA Beta-1,4-xylanase 98.6 2.5E-06 5.5E-11 82.1 17.4 116 103-248 68-191 (345)
37 PF14488 DUF4434: Domain of un 98.5 4.9E-06 1.1E-10 74.5 15.0 141 73-249 16-160 (166)
38 PF11790 Glyco_hydro_cc: Glyco 98.4 4.5E-06 9.8E-11 79.3 14.4 138 209-378 69-211 (239)
39 COG5309 Exo-beta-1,3-glucanase 98.4 3.3E-05 7.1E-10 72.5 19.3 205 73-359 59-268 (305)
40 PF14587 Glyco_hydr_30_2: O-Gl 98.3 0.00017 3.7E-09 71.9 20.9 225 87-341 57-314 (384)
41 PF02638 DUF187: Glycosyl hydr 97.7 0.0043 9.2E-08 61.3 18.8 209 75-296 17-263 (311)
42 COG5520 O-Glycosyl hydrolase [ 97.5 0.013 2.8E-07 57.5 18.7 242 76-381 64-312 (433)
43 PF02055 Glyco_hydro_30: O-Gly 97.5 0.01 2.2E-07 62.2 19.6 256 78-387 102-390 (496)
44 COG3934 Endo-beta-mannanase [C 97.4 7.8E-06 1.7E-10 82.2 -5.1 320 36-380 32-414 (587)
45 PF03662 Glyco_hydro_79n: Glyc 97.0 0.00025 5.4E-09 69.6 1.2 24 119-142 108-131 (319)
46 PF13200 DUF4015: Putative gly 96.8 0.36 7.8E-06 47.7 21.2 205 75-300 11-232 (316)
47 COG1649 Uncharacterized protei 96.4 0.096 2.1E-06 53.3 14.8 203 74-296 61-309 (418)
48 PRK10785 maltodextrin glucosid 96.2 0.084 1.8E-06 57.0 13.7 159 75-249 177-371 (598)
49 PLN00197 beta-amylase; Provisi 96.0 0.047 1E-06 56.8 10.5 119 75-213 125-274 (573)
50 PLN02161 beta-amylase 96.0 0.099 2.1E-06 53.9 12.2 130 75-239 115-251 (531)
51 TIGR01515 branching_enzym alph 95.9 0.31 6.7E-06 52.8 16.9 167 76-246 155-345 (613)
52 PLN02705 beta-amylase 95.9 0.097 2.1E-06 55.0 12.0 130 75-239 266-402 (681)
53 PLN02801 beta-amylase 95.9 0.11 2.4E-06 53.7 12.1 130 75-239 35-171 (517)
54 PF14871 GHL6: Hypothetical gl 95.9 0.034 7.4E-07 47.8 7.4 107 80-191 3-122 (132)
55 PLN02905 beta-amylase 95.8 0.11 2.3E-06 54.8 12.1 130 75-239 284-420 (702)
56 PRK12313 glycogen branching en 95.8 0.4 8.7E-06 52.2 17.2 163 79-250 173-361 (633)
57 PLN02803 beta-amylase 95.8 0.11 2.3E-06 54.0 11.7 130 75-239 105-241 (548)
58 PRK05402 glycogen branching en 95.7 0.39 8.5E-06 53.1 16.7 167 77-250 265-457 (726)
59 COG3534 AbfA Alpha-L-arabinofu 95.7 0.2 4.4E-06 50.9 12.8 177 78-296 50-246 (501)
60 PF12891 Glyco_hydro_44: Glyco 95.5 0.039 8.4E-07 51.9 6.8 58 182-247 107-176 (239)
61 cd06565 GH20_GcnA-like Glycosy 95.3 0.37 8.1E-06 47.4 13.5 162 73-247 13-183 (301)
62 PRK14706 glycogen branching en 95.0 0.95 2.1E-05 49.2 16.6 163 78-250 169-357 (639)
63 TIGR02402 trehalose_TreZ malto 94.9 0.78 1.7E-05 48.9 15.3 153 74-250 108-280 (542)
64 PRK12568 glycogen branching en 94.8 1.6 3.4E-05 48.0 17.4 166 78-251 271-462 (730)
65 cd02742 GH20_hexosaminidase Be 94.7 0.88 1.9E-05 44.8 14.1 148 74-241 13-184 (303)
66 PRK14705 glycogen branching en 94.5 1.5 3.3E-05 50.9 17.3 166 78-250 767-957 (1224)
67 smart00642 Aamy Alpha-amylase 94.5 0.15 3.1E-06 45.7 7.4 68 75-142 17-92 (166)
68 cd06564 GH20_DspB_LnbB-like Gl 94.5 1.6 3.5E-05 43.3 15.6 147 74-241 14-193 (326)
69 PLN02447 1,4-alpha-glucan-bran 93.7 2.4 5.3E-05 46.7 16.1 168 78-250 252-445 (758)
70 PLN02960 alpha-amylase 93.4 3.3 7.2E-05 46.2 16.5 165 75-247 414-608 (897)
71 PF01120 Alpha_L_fucos: Alpha- 93.4 2.5 5.5E-05 42.4 14.7 144 76-248 90-243 (346)
72 COG3664 XynB Beta-xylosidase [ 93.2 0.77 1.7E-05 46.3 10.4 231 85-380 13-256 (428)
73 TIGR02456 treS_nterm trehalose 93.2 3.3 7.1E-05 44.2 16.0 66 74-141 25-97 (539)
74 cd06545 GH18_3CO4_chitinase Th 93.0 4.8 0.0001 38.3 15.4 93 120-249 46-138 (253)
75 PF00128 Alpha-amylase: Alpha 92.7 0.27 5.9E-06 47.5 6.6 64 76-142 3-74 (316)
76 TIGR02104 pulA_typeI pullulana 92.5 2.4 5.1E-05 46.0 13.9 143 81-246 168-345 (605)
77 PLN02361 alpha-amylase 91.7 0.91 2E-05 46.5 9.1 82 52-141 9-97 (401)
78 cd06563 GH20_chitobiase-like T 91.0 9.9 0.00022 38.3 15.7 110 74-191 15-163 (357)
79 PRK09936 hypothetical protein; 91.0 9.3 0.0002 37.1 14.4 59 74-141 35-93 (296)
80 cd06568 GH20_SpHex_like A subg 91.0 7 0.00015 38.9 14.4 149 74-246 15-192 (329)
81 COG3623 SgaU Putative L-xylulo 90.7 11 0.00024 35.4 14.0 70 116-217 92-161 (287)
82 cd06562 GH20_HexA_HexB-like Be 90.7 13 0.00027 37.4 16.0 109 74-191 15-147 (348)
83 PLN00196 alpha-amylase; Provis 90.2 3.8 8.3E-05 42.4 12.0 65 75-141 42-113 (428)
84 smart00812 Alpha_L_fucos Alpha 89.5 9.2 0.0002 39.0 14.0 137 78-244 82-226 (384)
85 cd06570 GH20_chitobiase-like_1 89.4 9.9 0.00021 37.6 13.8 65 74-141 15-89 (311)
86 TIGR01370 cysRS possible cyste 89.3 12 0.00026 37.1 14.2 71 172-247 140-210 (315)
87 PF01373 Glyco_hydro_14: Glyco 89.2 0.52 1.1E-05 47.7 4.6 104 76-191 15-139 (402)
88 KOG2566 Beta-glucocerebrosidas 89.2 17 0.00037 36.7 14.8 173 176-391 226-419 (518)
89 PF00728 Glyco_hydro_20: Glyco 89.1 1.8 3.8E-05 43.3 8.5 153 74-247 15-214 (351)
90 TIGR01531 glyc_debranch glycog 89.0 1.9 4.1E-05 50.2 9.3 102 37-141 94-206 (1464)
91 PF05089 NAGLU: Alpha-N-acetyl 89.0 1.8 3.8E-05 42.9 8.0 158 74-249 16-218 (333)
92 PF02065 Melibiase: Melibiase; 88.8 16 0.00035 37.3 15.3 177 57-250 41-234 (394)
93 KOG2233 Alpha-N-acetylglucosam 88.8 2.2 4.8E-05 43.9 8.7 158 74-249 75-281 (666)
94 COG0296 GlgB 1,4-alpha-glucan 86.7 20 0.00043 38.9 14.8 160 75-244 163-351 (628)
95 cd06547 GH85_ENGase Endo-beta- 86.6 1.5 3.3E-05 43.9 6.1 95 124-247 50-145 (339)
96 PRK10933 trehalose-6-phosphate 86.6 2.7 5.9E-05 45.0 8.4 64 75-141 31-102 (551)
97 PRK03705 glycogen debranching 86.5 1.6 3.6E-05 47.6 6.8 59 82-141 184-263 (658)
98 PF07488 Glyco_hydro_67M: Glyc 86.4 4.5 9.9E-05 39.4 8.9 100 75-212 55-157 (328)
99 TIGR02403 trehalose_treC alpha 86.1 2.8 6.1E-05 44.8 8.3 167 75-250 25-244 (543)
100 PLN02877 alpha-amylase/limit d 85.5 26 0.00056 39.9 15.5 120 118-253 464-598 (970)
101 PRK09441 cytoplasmic alpha-amy 85.4 1.6 3.4E-05 45.9 5.9 66 76-141 21-102 (479)
102 PLN02784 alpha-amylase 84.9 5.2 0.00011 44.6 9.6 83 52-141 500-589 (894)
103 PRK14582 pgaB outer membrane N 84.1 20 0.00044 39.2 13.7 240 76-341 333-614 (671)
104 TIGR02401 trehalose_TreY malto 83.9 3.6 7.8E-05 45.8 7.9 68 75-142 14-87 (825)
105 cd02875 GH18_chitobiase Chitob 83.7 8.8 0.00019 38.7 10.2 90 124-249 68-157 (358)
106 PRK09505 malS alpha-amylase; R 83.6 4 8.8E-05 44.7 8.2 67 75-141 228-313 (683)
107 PRK14511 maltooligosyl trehalo 83.2 3.9 8.5E-05 45.8 7.9 69 74-142 17-91 (879)
108 PF03659 Glyco_hydro_71: Glyco 83.0 6.8 0.00015 39.9 9.1 55 74-141 14-68 (386)
109 cd06602 GH31_MGAM_SI_GAA This 83.0 30 0.00065 34.6 13.6 158 75-248 22-199 (339)
110 PF14883 GHL13: Hypothetical g 82.8 44 0.00096 32.5 13.8 240 76-342 16-267 (294)
111 TIGR02103 pullul_strch alpha-1 82.3 37 0.0008 38.5 15.1 114 118-253 402-527 (898)
112 PRK13398 3-deoxy-7-phosphohept 82.2 12 0.00026 36.1 10.0 80 49-143 21-101 (266)
113 PRK09856 fructoselysine 3-epim 81.6 3.1 6.7E-05 39.9 5.8 60 77-140 90-149 (275)
114 cd06603 GH31_GANC_GANAB_alpha 81.5 38 0.00082 33.8 13.8 132 74-217 21-165 (339)
115 PF07555 NAGidase: beta-N-acet 80.6 18 0.00038 35.7 10.7 92 73-191 11-103 (306)
116 PF01261 AP_endonuc_2: Xylose 80.1 24 0.00051 31.6 10.9 130 77-244 27-158 (213)
117 COG3589 Uncharacterized conser 80.1 5.4 0.00012 39.4 6.7 57 76-142 15-71 (360)
118 COG3661 AguA Alpha-glucuronida 80.0 28 0.00061 35.7 11.8 105 75-212 181-286 (684)
119 PRK14507 putative bifunctional 79.5 5.3 0.00011 47.9 7.7 68 75-142 756-829 (1693)
120 PF05913 DUF871: Bacterial pro 79.4 5.8 0.00013 40.0 7.0 58 75-142 12-69 (357)
121 TIGR02100 glgX_debranch glycog 79.3 4.2 9.2E-05 44.7 6.5 59 82-141 189-266 (688)
122 cd06542 GH18_EndoS-like Endo-b 78.3 38 0.00083 32.0 12.1 100 119-249 50-151 (255)
123 cd06600 GH31_MGAM-like This fa 77.8 44 0.00095 33.0 12.7 156 74-248 21-195 (317)
124 PF04914 DltD_C: DltD C-termin 77.2 20 0.00043 30.6 8.7 86 116-230 32-117 (130)
125 PRK13210 putative L-xylulose 5 76.4 6.9 0.00015 37.6 6.5 61 77-141 94-154 (284)
126 KOG3698 Hyaluronoglucosaminida 76.2 24 0.00051 37.4 10.3 81 52-141 12-95 (891)
127 PRK14510 putative bifunctional 75.5 7.6 0.00017 45.6 7.5 60 81-141 191-268 (1221)
128 TIGR03234 OH-pyruv-isom hydrox 74.9 8.1 0.00017 36.6 6.4 62 77-142 84-145 (254)
129 COG0366 AmyA Glycosidases [Car 73.4 9.9 0.00021 39.6 7.2 67 75-141 27-98 (505)
130 TIGR02455 TreS_stutzeri trehal 73.2 8.7 0.00019 41.5 6.6 63 80-142 77-152 (688)
131 cd06593 GH31_xylosidase_YicI Y 73.2 76 0.0016 31.0 13.0 159 74-248 21-204 (308)
132 cd06569 GH20_Sm-chitobiase-lik 73.0 14 0.00031 38.4 8.1 64 74-140 19-117 (445)
133 TIGR00542 hxl6Piso_put hexulos 72.8 9.5 0.00021 36.7 6.4 61 77-141 94-154 (279)
134 PRK13397 3-deoxy-7-phosphohept 72.7 15 0.00032 35.1 7.5 62 75-142 27-88 (250)
135 TIGR00542 hxl6Piso_put hexulos 72.3 74 0.0016 30.4 12.6 108 75-215 50-157 (279)
136 COG1453 Predicted oxidoreducta 71.8 1.1E+02 0.0023 31.1 13.3 257 52-416 9-270 (391)
137 TIGR02102 pullulan_Gpos pullul 71.4 14 0.00031 42.7 8.2 156 75-253 478-673 (1111)
138 cd02872 GH18_chitolectin_chito 71.2 43 0.00093 33.5 11.0 103 120-249 56-159 (362)
139 PRK13209 L-xylulose 5-phosphat 71.2 10 0.00023 36.4 6.3 61 77-141 99-159 (283)
140 cd06589 GH31 The enzymes of gl 70.8 1E+02 0.0022 29.5 13.7 64 74-140 21-86 (265)
141 PF01261 AP_endonuc_2: Xylose 70.1 12 0.00025 33.7 6.1 65 76-142 70-134 (213)
142 PRK08673 3-deoxy-7-phosphohept 69.7 23 0.00049 35.4 8.3 76 52-142 91-166 (335)
143 PRK12595 bifunctional 3-deoxy- 69.3 35 0.00075 34.5 9.7 79 49-142 112-191 (360)
144 PF00332 Glyco_hydro_17: Glyco 69.0 1.2E+02 0.0027 29.8 14.5 112 80-249 16-129 (310)
145 PF09928 DUF2160: Predicted sm 67.9 4.4 9.4E-05 31.9 2.2 41 10-50 6-49 (88)
146 cd02874 GH18_CFLE_spore_hydrol 67.8 27 0.0006 34.2 8.6 95 123-248 48-142 (313)
147 cd06591 GH31_xylosidase_XylS X 64.8 50 0.0011 32.6 9.7 127 75-217 22-162 (319)
148 PRK09997 hydroxypyruvate isome 63.9 20 0.00043 34.0 6.5 62 77-142 85-146 (258)
149 cd06595 GH31_xylosidase_XylS-l 63.6 76 0.0016 30.9 10.7 131 74-217 22-162 (292)
150 KOG4701 Chitinase [Cell wall/m 63.4 1.8E+02 0.0038 29.6 16.4 199 121-378 91-293 (568)
151 PRK14042 pyruvate carboxylase 63.3 31 0.00067 37.3 8.4 39 56-99 80-118 (596)
152 smart00636 Glyco_18 Glycosyl h 63.2 56 0.0012 32.2 9.9 98 121-249 53-154 (334)
153 PRK09856 fructoselysine 3-epim 63.0 1.3E+02 0.0029 28.5 12.2 132 77-248 47-180 (275)
154 cd00019 AP2Ec AP endonuclease 62.9 12 0.00026 35.9 4.9 61 76-141 84-144 (279)
155 cd02871 GH18_chitinase_D-like 62.1 1.3E+02 0.0027 29.7 12.0 93 120-250 60-155 (312)
156 PRK14565 triosephosphate isome 61.3 90 0.0019 29.6 10.2 118 84-250 79-196 (237)
157 COG1523 PulA Type II secretory 60.1 16 0.00034 40.2 5.5 58 83-141 206-286 (697)
158 PLN03244 alpha-amylase; Provis 58.2 1.2E+02 0.0025 34.0 11.6 125 119-250 440-585 (872)
159 PRK12677 xylose isomerase; Pro 57.8 22 0.00048 36.2 5.9 64 77-140 114-179 (384)
160 PF06415 iPGM_N: BPG-independe 57.8 75 0.0016 29.8 8.9 78 52-142 26-103 (223)
161 PRK13209 L-xylulose 5-phosphat 57.5 1.8E+02 0.0038 27.7 12.6 102 75-213 55-160 (283)
162 TIGR01361 DAHP_synth_Bsub phos 57.4 31 0.00067 33.1 6.5 76 52-142 23-98 (260)
163 PF10566 Glyco_hydro_97: Glyco 57.0 19 0.00042 34.8 5.0 65 79-157 108-172 (273)
164 KOG1066 Glucosidase II catalyt 56.6 41 0.00088 36.8 7.6 38 172-219 477-515 (915)
165 COG1501 Alpha-glucosidases, fa 56.2 1.4E+02 0.003 33.6 12.0 162 74-253 277-466 (772)
166 PF02057 Glyco_hydro_59: Glyco 54.4 63 0.0014 35.2 8.8 176 124-380 116-295 (669)
167 PLN02229 alpha-galactosidase 54.1 36 0.00078 35.2 6.6 76 56-138 62-146 (427)
168 PRK12581 oxaloacetate decarbox 54.1 60 0.0013 34.0 8.4 49 76-140 104-152 (468)
169 PF07071 DUF1341: Protein of u 54.0 41 0.00089 31.0 6.2 46 78-137 136-181 (218)
170 PLN02763 hydrolase, hydrolyzin 54.0 3.2E+02 0.0069 31.6 14.5 64 75-141 199-262 (978)
171 smart00481 POLIIIAc DNA polyme 53.6 36 0.00077 24.9 5.0 46 78-140 16-61 (67)
172 PTZ00333 triosephosphate isome 52.8 1.2E+02 0.0027 29.0 9.8 48 84-141 83-130 (255)
173 COG5016 Pyruvate/oxaloacetate 52.5 43 0.00094 34.1 6.7 62 58-140 84-145 (472)
174 KOG2499 Beta-N-acetylhexosamin 52.4 35 0.00077 35.5 6.2 66 75-141 196-271 (542)
175 PLN02561 triosephosphate isome 52.2 2.2E+02 0.0048 27.2 12.1 48 84-141 82-129 (253)
176 TIGR03849 arch_ComA phosphosul 51.9 54 0.0012 31.1 7.0 51 76-140 70-120 (237)
177 TIGR02803 ExbD_1 TonB system t 51.3 65 0.0014 26.8 6.9 23 74-96 96-118 (122)
178 PRK09989 hypothetical protein; 51.2 36 0.00078 32.3 5.9 60 77-140 85-144 (258)
179 COG2342 Predicted extracellula 50.7 1.4E+02 0.003 29.0 9.5 131 174-341 121-257 (300)
180 cd07937 DRE_TIM_PC_TC_5S Pyruv 50.6 55 0.0012 31.6 7.2 49 76-140 90-138 (275)
181 PF02472 ExbD: Biopolymer tran 49.7 32 0.0007 28.7 4.8 55 42-96 58-125 (130)
182 cd00311 TIM Triosephosphate is 49.6 2.4E+02 0.0051 26.8 11.5 74 52-141 52-125 (242)
183 PRK14567 triosephosphate isome 49.5 1.6E+02 0.0035 28.1 10.0 47 85-141 80-126 (253)
184 PRK13210 putative L-xylulose 5 49.5 2.4E+02 0.0051 26.8 12.8 105 75-212 50-154 (284)
185 PF02679 ComA: (2R)-phospho-3- 49.1 38 0.00082 32.2 5.5 51 76-140 83-133 (244)
186 TIGR03581 EF_0839 conserved hy 48.8 36 0.00077 31.7 5.1 46 77-136 135-180 (236)
187 PF14701 hDGE_amylase: glucano 48.7 57 0.0012 33.6 7.1 66 76-141 21-98 (423)
188 PRK12331 oxaloacetate decarbox 48.4 72 0.0016 33.3 8.0 49 76-140 95-143 (448)
189 cd06601 GH31_lyase_GLase GLase 47.5 84 0.0018 31.4 8.0 116 75-218 22-137 (332)
190 cd06604 GH31_glucosidase_II_Ma 47.4 1.1E+02 0.0024 30.4 9.0 64 75-141 22-85 (339)
191 TIGR02804 ExbD_2 TonB system t 46.8 80 0.0017 26.3 6.7 55 42-96 54-117 (121)
192 cd01299 Met_dep_hydrolase_A Me 46.6 96 0.0021 30.5 8.4 60 75-139 118-179 (342)
193 PF10566 Glyco_hydro_97: Glyco 45.7 1E+02 0.0022 29.9 8.0 110 74-191 29-149 (273)
194 PRK00042 tpiA triosephosphate 45.6 1.7E+02 0.0037 27.9 9.5 48 84-141 80-127 (250)
195 cd02877 GH18_hevamine_XipI_cla 45.4 3E+02 0.0064 26.7 13.3 131 119-296 58-190 (280)
196 PRK13396 3-deoxy-7-phosphohept 45.0 2.3E+02 0.005 28.5 10.6 79 49-142 94-174 (352)
197 PRK09997 hydroxypyruvate isome 44.4 2.8E+02 0.006 26.1 13.7 92 116-244 81-172 (258)
198 cd00598 GH18_chitinase-like Th 43.9 2.4E+02 0.0052 25.3 11.4 93 124-249 53-147 (210)
199 PLN02692 alpha-galactosidase 43.7 72 0.0016 32.8 6.9 80 52-138 50-139 (412)
200 PRK01060 endonuclease IV; Prov 43.6 1.8E+02 0.0038 27.7 9.5 50 79-136 14-63 (281)
201 cd06598 GH31_transferase_CtsZ 42.8 1.7E+02 0.0036 28.9 9.4 66 75-142 22-92 (317)
202 PRK12330 oxaloacetate decarbox 42.7 1E+02 0.0022 32.6 8.0 64 56-140 81-144 (499)
203 PF01055 Glyco_hydro_31: Glyco 41.6 2.8E+02 0.0061 28.5 11.3 128 75-217 41-183 (441)
204 cd06548 GH18_chitinase The GH1 41.6 2.5E+02 0.0054 27.6 10.4 103 120-249 70-181 (322)
205 PRK14040 oxaloacetate decarbox 40.8 1E+02 0.0022 33.4 7.9 46 76-137 96-141 (593)
206 KOG0470 1,4-alpha-glucan branc 40.5 46 0.001 36.4 5.2 65 77-141 255-332 (757)
207 COG2089 SpsE Sialic acid synth 40.1 2E+02 0.0042 28.7 8.9 90 44-142 4-112 (347)
208 PF03644 Glyco_hydro_85: Glyco 39.3 44 0.00095 33.0 4.5 92 125-246 47-139 (311)
209 KOG2331 Predicted glycosylhydr 38.5 62 0.0013 33.2 5.4 90 126-247 117-208 (526)
210 TIGR02171 Fb_sc_TIGR02171 Fibr 38.5 2.9E+02 0.0063 31.4 10.9 27 116-142 804-830 (912)
211 cd07948 DRE_TIM_HCS Saccharomy 37.0 58 0.0012 31.3 4.9 60 80-142 74-134 (262)
212 PF15281 Consortin_C: Consorti 37.0 27 0.00059 28.7 2.2 24 10-33 53-76 (113)
213 TIGR02801 tolR TolR protein. T 36.8 1.2E+02 0.0026 25.4 6.4 23 74-96 104-126 (129)
214 cd07939 DRE_TIM_NifV Streptomy 36.8 54 0.0012 31.2 4.7 59 80-140 72-130 (259)
215 PRK09282 pyruvate carboxylase 36.0 1.3E+02 0.0029 32.5 7.9 50 75-140 94-143 (592)
216 PRK05434 phosphoglyceromutase; 35.9 2.7E+02 0.0058 29.6 9.9 78 52-142 108-185 (507)
217 PRK05692 hydroxymethylglutaryl 35.7 62 0.0013 31.5 4.9 60 80-141 82-141 (287)
218 COG0276 HemH Protoheme ferro-l 35.7 3.2E+02 0.0069 27.2 9.8 109 122-240 104-219 (320)
219 cd06592 GH31_glucosidase_KIAA1 35.3 79 0.0017 30.9 5.7 66 74-142 27-92 (303)
220 TIGR02631 xylA_Arthro xylose i 35.0 86 0.0019 31.9 6.0 64 77-140 115-180 (382)
221 cd02878 GH18_zymocin_alpha Zym 34.7 3.2E+02 0.007 27.2 10.0 65 174-249 88-157 (345)
222 COG0469 PykF Pyruvate kinase [ 34.6 1E+02 0.0022 32.4 6.4 47 80-138 20-66 (477)
223 PRK14842 undecaprenyl pyrophos 33.9 62 0.0014 30.7 4.4 60 76-138 38-100 (241)
224 cd06599 GH31_glycosidase_Aec37 33.9 2.5E+02 0.0054 27.6 9.0 66 75-142 27-95 (317)
225 PRK12858 tagatose 1,6-diphosph 33.6 76 0.0016 31.8 5.2 55 80-140 109-163 (340)
226 cd07944 DRE_TIM_HOA_like 4-hyd 33.1 91 0.002 30.0 5.6 47 80-142 85-131 (266)
227 TIGR02090 LEU1_arch isopropylm 32.8 65 0.0014 32.5 4.7 61 80-142 74-134 (363)
228 KOG0259 Tyrosine aminotransfer 32.2 78 0.0017 32.2 4.9 72 76-155 182-254 (447)
229 PRK14841 undecaprenyl pyrophos 32.0 68 0.0015 30.3 4.3 63 76-138 33-95 (233)
230 TIGR01235 pyruv_carbox pyruvat 31.7 1.7E+02 0.0036 34.5 8.2 63 57-140 610-672 (1143)
231 PRK14831 undecaprenyl pyrophos 31.5 68 0.0015 30.6 4.3 63 76-138 50-112 (249)
232 PF13380 CoA_binding_2: CoA bi 31.4 1.2E+02 0.0026 25.1 5.3 43 75-137 64-106 (116)
233 TIGR02660 nifV_homocitr homoci 31.0 70 0.0015 32.3 4.6 59 80-141 75-134 (365)
234 smart00518 AP2Ec AP endonuclea 30.8 4.1E+02 0.009 25.0 9.8 52 79-138 12-63 (273)
235 PRK08195 4-hyroxy-2-oxovalerat 30.7 1.3E+02 0.0028 30.1 6.3 46 80-141 91-136 (337)
236 COG2876 AroA 3-deoxy-D-arabino 30.7 2E+02 0.0043 27.8 7.1 61 75-141 57-117 (286)
237 PF10035 DUF2179: Uncharacteri 30.5 54 0.0012 23.1 2.7 20 230-249 29-48 (55)
238 PF13547 GTA_TIM: GTA TIM-barr 30.4 1.8E+02 0.0039 28.3 6.8 83 205-296 19-109 (299)
239 TIGR03217 4OH_2_O_val_ald 4-hy 30.1 1.3E+02 0.0029 29.9 6.3 46 80-141 90-135 (333)
240 cd07945 DRE_TIM_CMS Leptospira 29.6 80 0.0017 30.7 4.5 61 80-142 77-137 (280)
241 TIGR03586 PseI pseudaminic aci 29.5 2.3E+02 0.0049 28.3 7.8 68 75-142 15-99 (327)
242 PRK14839 undecaprenyl pyrophos 29.4 84 0.0018 29.8 4.5 60 76-138 39-101 (239)
243 PF00682 HMGL-like: HMGL-like 29.3 99 0.0021 28.8 5.1 65 75-141 65-129 (237)
244 COG0269 SgbH 3-hexulose-6-phos 29.2 1.8E+02 0.0038 27.2 6.4 46 83-145 73-118 (217)
245 TIGR01108 oadA oxaloacetate de 29.2 1.6E+02 0.0035 31.9 7.1 50 75-140 89-138 (582)
246 TIGR01307 pgm_bpd_ind 2,3-bisp 29.1 3.9E+02 0.0084 28.4 9.7 72 76-158 123-194 (501)
247 KOG0471 Alpha-amylase [Carbohy 28.9 1E+02 0.0023 32.9 5.6 65 77-141 40-109 (545)
248 PRK11267 biopolymer transport 28.8 3.3E+02 0.0072 23.2 7.9 23 74-96 110-132 (141)
249 PRK14840 undecaprenyl pyrophos 28.6 87 0.0019 30.0 4.5 60 76-138 52-114 (250)
250 PF09370 TIM-br_sig_trns: TIM- 28.6 1.9E+02 0.0041 27.9 6.6 56 77-139 95-156 (268)
251 COG1306 Uncharacterized conser 28.3 96 0.0021 30.4 4.6 65 75-139 75-143 (400)
252 PF07799 DUF1643: Protein of u 28.3 3.3E+02 0.0071 22.9 7.7 41 52-96 11-51 (136)
253 PF00704 Glyco_hydro_18: Glyco 28.1 2.7E+02 0.0058 27.1 8.2 103 116-249 58-164 (343)
254 TIGR00055 uppS undecaprenyl di 27.7 95 0.0021 29.2 4.5 63 76-138 29-91 (226)
255 TIGR03234 OH-pyruv-isom hydrox 27.4 5.1E+02 0.011 24.1 9.8 92 116-244 80-171 (254)
256 PRK14837 undecaprenyl pyrophos 27.4 96 0.0021 29.3 4.5 60 76-138 36-98 (230)
257 PF06692 MNSV_P7B: Melon necro 27.3 54 0.0012 23.4 2.1 20 9-28 14-33 (61)
258 COG3525 Chb N-acetyl-beta-hexo 27.1 1.6E+02 0.0035 32.1 6.5 172 74-254 275-491 (732)
259 PRK10658 putative alpha-glucos 27.0 2.5E+02 0.0054 30.9 8.2 109 75-190 281-406 (665)
260 PRK09261 phospho-2-dehydro-3-d 27.0 4E+02 0.0087 26.8 8.9 82 52-142 51-146 (349)
261 PF13199 Glyco_hydro_66: Glyco 26.9 1.6E+02 0.0034 31.7 6.5 62 75-139 116-189 (559)
262 PLN02746 hydroxymethylglutaryl 26.8 1E+02 0.0022 31.0 4.8 60 79-141 123-183 (347)
263 PRK11858 aksA trans-homoaconit 26.8 1E+02 0.0022 31.3 5.0 60 80-141 78-137 (378)
264 PRK12822 phospho-2-dehydro-3-d 26.8 4.2E+02 0.009 26.7 8.9 83 52-143 51-147 (356)
265 cd00475 CIS_IPPS Cis (Z)-Isopr 26.8 99 0.0021 29.0 4.4 60 76-138 30-92 (221)
266 PRK10240 undecaprenyl pyrophos 26.1 1.1E+02 0.0023 28.9 4.6 63 76-138 23-85 (229)
267 cd07943 DRE_TIM_HOA 4-hydroxy- 25.8 2E+02 0.0043 27.4 6.5 46 80-141 88-133 (263)
268 cd06592 GH31_glucosidase_KIAA1 25.2 3.6E+02 0.0078 26.3 8.4 82 79-191 72-153 (303)
269 cd03174 DRE_TIM_metallolyase D 24.7 1.3E+02 0.0027 28.4 5.0 60 80-142 77-137 (265)
270 TIGR03128 RuMP_HxlA 3-hexulose 24.5 2.2E+02 0.0048 25.7 6.4 44 82-142 68-111 (206)
271 cd02876 GH18_SI-CLP Stabilin-1 24.5 6.6E+02 0.014 24.5 10.2 60 172-242 87-148 (318)
272 PRK14836 undecaprenyl pyrophos 23.9 1E+02 0.0022 29.5 4.1 63 76-138 44-106 (253)
273 PTZ00445 p36-lilke protein; Pr 23.8 1.9E+02 0.0042 27.0 5.6 65 75-142 27-100 (219)
274 PRK12457 2-dehydro-3-deoxyphos 23.8 6.8E+02 0.015 24.4 9.8 65 75-143 28-97 (281)
275 PRK12399 tagatose 1,6-diphosph 23.8 1.4E+02 0.0031 29.5 5.0 54 83-142 111-164 (324)
276 COG1082 IolE Sugar phosphate i 23.7 3.8E+02 0.0083 25.0 8.1 64 76-141 83-147 (274)
277 TIGR00034 aroFGH phospho-2-deh 23.6 5.1E+02 0.011 26.0 8.9 82 52-142 46-141 (344)
278 COG4130 Predicted sugar epimer 23.6 4.4E+02 0.0096 24.8 7.8 78 56-138 63-140 (272)
279 COG0848 ExbD Biopolymer transp 23.5 4.7E+02 0.01 22.4 9.9 48 75-136 80-127 (137)
280 PRK12755 phospho-2-dehydro-3-d 23.5 5.3E+02 0.011 26.0 9.0 82 52-142 52-147 (353)
281 PLN03033 2-dehydro-3-deoxyphos 23.3 4.7E+02 0.01 25.5 8.3 76 55-143 17-97 (290)
282 PRK14829 undecaprenyl pyrophos 23.2 1.3E+02 0.0028 28.7 4.5 63 76-138 44-106 (243)
283 cd07938 DRE_TIM_HMGL 3-hydroxy 23.1 1.4E+02 0.0031 28.7 5.0 61 80-142 76-136 (274)
284 PF13547 GTA_TIM: GTA TIM-barr 23.1 1.6E+02 0.0035 28.6 5.1 32 119-150 45-77 (299)
285 cd06597 GH31_transferase_CtsY 23.0 7.5E+02 0.016 24.6 14.2 68 74-141 21-106 (340)
286 KOG1261 Malate synthase [Energ 22.8 3.7E+02 0.0079 27.4 7.6 53 372-428 464-516 (552)
287 PRK14833 undecaprenyl pyrophos 22.7 1.3E+02 0.0027 28.5 4.3 60 76-138 34-96 (233)
288 TIGR00419 tim triosephosphate 22.6 2.1E+02 0.0046 26.4 5.8 43 84-140 75-117 (205)
289 COG0320 LipA Lipoate synthase 22.5 5.7E+02 0.012 24.9 8.6 81 203-296 172-252 (306)
290 cd07941 DRE_TIM_LeuA3 Desulfob 22.5 1.5E+02 0.0031 28.6 4.9 58 81-140 82-139 (273)
291 PRK09989 hypothetical protein; 22.0 6.6E+02 0.014 23.5 14.2 91 117-244 82-172 (258)
292 PRK14834 undecaprenyl pyrophos 21.7 1.6E+02 0.0035 28.1 4.8 60 76-138 44-106 (249)
293 cd06543 GH18_PF-ChiA-like PF-C 21.1 7.8E+02 0.017 24.0 13.3 127 84-250 19-146 (294)
294 COG1809 (2R)-phospho-3-sulfola 21.0 1.9E+02 0.0041 27.2 4.9 51 75-139 88-138 (258)
295 PRK14041 oxaloacetate decarbox 21.0 2.5E+02 0.0054 29.5 6.5 49 76-140 94-142 (467)
296 PRK14832 undecaprenyl pyrophos 21.0 1.4E+02 0.0031 28.5 4.4 60 76-138 48-110 (253)
297 PRK13125 trpA tryptophan synth 20.5 2.5E+02 0.0055 26.4 6.0 50 78-142 89-138 (244)
298 cd07947 DRE_TIM_Re_CS Clostrid 20.4 1.6E+02 0.0034 28.6 4.7 59 80-141 77-136 (279)
299 PRK14830 undecaprenyl pyrophos 20.4 1.5E+02 0.0033 28.3 4.4 63 76-138 52-114 (251)
300 PF08793 2C_adapt: 2-cysteine 20.4 51 0.0011 21.6 0.8 12 192-203 12-23 (37)
301 KOG1348 Asparaginyl peptidases 20.4 5.3E+02 0.012 26.1 8.1 52 56-113 49-102 (477)
302 TIGR01232 lacD tagatose 1,6-di 20.3 1.9E+02 0.0041 28.7 5.1 54 83-142 112-165 (325)
303 PRK14827 undecaprenyl pyrophos 20.3 1.5E+02 0.0033 29.1 4.4 63 76-138 97-159 (296)
304 PRK04161 tagatose 1,6-diphosph 20.2 1.9E+02 0.0041 28.8 5.1 55 82-142 112-166 (329)
305 COG3684 LacD Tagatose-1,6-bisp 20.2 1.8E+02 0.0039 28.0 4.7 53 83-142 117-169 (306)
306 PRK10040 hypothetical protein; 20.1 1.5E+02 0.0033 20.7 3.1 34 20-53 6-41 (52)
No 1
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.97 E-value=2.1e-29 Score=243.71 Aligned_cols=265 Identities=25% Similarity=0.408 Sum_probs=184.8
Q ss_pred CCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccc-cCCC-CCChHHHHHHHHHHHHH
Q 014151 52 DGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQ-ISPG-QFDERVFKALDHVIVEA 129 (430)
Q Consensus 52 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~-~~pg-~~de~~l~~lD~~l~~A 129 (430)
+|+++.+.|+|.+|... ...+++|+.++++|+|+||+++. |..++ +.|+ .++++.+++||++|++|
T Consensus 4 ~G~~v~~~G~n~~w~~~--------~~~~~~~~~~~~~G~n~VRi~v~----~~~~~~~~~~~~~~~~~~~~ld~~v~~a 71 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYNP--------SITEADFDQLKALGFNTVRIPVG----WEAYQEPNPGYNYDETYLARLDRIVDAA 71 (281)
T ss_dssp TSEBEEEEEEEETTSGG--------GSHHHHHHHHHHTTESEEEEEEE----STSTSTTSTTTSBTHHHHHHHHHHHHHH
T ss_pred CCCeEEeeeeecccCCC--------CCHHHHHHHHHHCCCCEEEeCCC----HHHhcCCCCCccccHHHHHHHHHHHHHH
Confidence 89999999999885432 25889999999999999999775 44454 4555 58999999999999999
Q ss_pred HHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEE
Q 014151 130 RKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAW 209 (430)
Q Consensus 130 ~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~w 209 (430)
+++||+|||++|.. +.|.. ....+...+...+.+.++|+.+++| |+++|.|++|
T Consensus 72 ~~~gi~vild~h~~----------~~w~~--------~~~~~~~~~~~~~~~~~~~~~la~~--------y~~~~~v~~~ 125 (281)
T PF00150_consen 72 QAYGIYVILDLHNA----------PGWAN--------GGDGYGNNDTAQAWFKSFWRALAKR--------YKDNPPVVGW 125 (281)
T ss_dssp HHTT-EEEEEEEES----------TTCSS--------STSTTTTHHHHHHHHHHHHHHHHHH--------HTTTTTTEEE
T ss_pred HhCCCeEEEEeccC----------ccccc--------cccccccchhhHHHHHhhhhhhccc--------cCCCCcEEEE
Confidence 99999999999874 12210 0111223456788899999999999 9999999999
Q ss_pred eecCCCCCCCCC------ChHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCccchhhccCcchhhccCC
Q 014151 210 ELINEPRCMSDP------SGDTLQDWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPEMWASALGSDFIRNSNN 283 (430)
Q Consensus 210 el~NEp~~~~~~------~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~w~~~~g~df~~~~~~ 283 (430)
||+|||...... ..+.+.+|++++.++||+++|+++|+++..++... +... ........
T Consensus 126 el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~~~~~~~---------~~~~------~~~~P~~~ 190 (281)
T PF00150_consen 126 ELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGGGGWGAD---------PDGA------AADNPNDA 190 (281)
T ss_dssp ESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEEHHHHTB---------HHHH------HHHSTTTT
T ss_pred EecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCCCccccc---------cchh------hhcCcccc
Confidence 999999986431 13678899999999999999999999985332110 0000 00000113
Q ss_pred CCcceEEeeecCCCCCCCcc----hhhhHHHHHHHHHHHHHhhhhcCCCcEEEEecCCCCCCCCCChhHHHHHHHHHHHH
Q 014151 284 DNIDFASVHIYPDHWFHDLE----FEDDLKFVTKWMLSHIEDGDKELNKPVFFTEYGLSNLIKGFEPSLRDKLYKTILDI 359 (430)
Q Consensus 284 ~~iD~~s~H~Y~~~w~~~~~----~~~~~~~~~~~l~~~~~~a~~~~gkPv~v~EfG~~~~~~~~~~~~r~~~~~~~~~~ 359 (430)
...+++++|.|++ +..... ...........+......+.+ .++||+|||||....... ...++...+++.
T Consensus 191 ~~~~~~~~H~Y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~pv~~gE~G~~~~~~~----~~~~~~~~~~~~ 264 (281)
T PF00150_consen 191 DNNDVYSFHFYDP-YDFSDQWNPGNWGDASALESSFRAALNWAKK-NGKPVVVGEFGWSNNDGN----GSTDYADAWLDY 264 (281)
T ss_dssp TTSEEEEEEEETT-TCHHTTTSTCSHHHHHHHHHHHHHHHHHHHH-TTSEEEEEEEESSTTTSC----HHHHHHHHHHHH
T ss_pred cCceeEEeeEeCC-CCcCCccccccchhhhHHHHHHHHHHHHHHH-cCCeEEEeCcCCcCCCCC----cCHHHHHHHHHH
Confidence 4677999999985 221110 011123344556666666664 899999999999754311 233444444444
Q ss_pred HHHHHhcCCCcccceeeeeccC
Q 014151 360 VYKSAKRKRSGAGALIWQLFVE 381 (430)
Q Consensus 360 ~~~~~~~~~~~~G~~~W~~~~~ 381 (430)
+.+ ...|+++|+|+.+
T Consensus 265 ~~~------~~~g~~~W~~~~~ 280 (281)
T PF00150_consen 265 LEQ------NGIGWIYWSWKPN 280 (281)
T ss_dssp HHH------TTCEEEECEESSS
T ss_pred HHH------CCCeEEEEecCCC
Confidence 432 2689999999875
No 2
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=2.5e-29 Score=246.97 Aligned_cols=295 Identities=25% Similarity=0.372 Sum_probs=217.9
Q ss_pred EEECCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCC-hHHHHHHHHHHH
Q 014151 49 FMLDGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFD-ERVFKALDHVIV 127 (430)
Q Consensus 49 f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~d-e~~l~~lD~~l~ 127 (430)
|.++++.+.+.+.+.+|..+. .+.++++++.++.+|++++|+|. -||.. .....|.-+ +..+.+++++++
T Consensus 4 F~Lg~n~wprIanikmw~~~~------~~ei~~dle~a~~vg~k~lR~fi-LDgEd--c~d~~G~~na~s~~~y~~~fla 74 (587)
T COG3934 4 FALGLNRWPRIANIKMWPAIG------NREIKADLEPAGFVGVKDLRLFI-LDGED--CRDKEGYRNAGSNVWYAAWFLA 74 (587)
T ss_pred EEeccccchhhhhhhHHHHhh------hhhhhcccccccCccceeEEEEE-ecCcc--hhhhhceecccccHHHHHHHhh
Confidence 556666666666665665543 47899999999999999999984 35421 222334434 445999999999
Q ss_pred HHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCcee
Q 014151 128 EARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIF 207 (430)
Q Consensus 128 ~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~ 207 (430)
.|..++|+|+++|.+.|.++||++++..|+ |. ..+.+++.|+..+.-+++|+..+|+. ||.+|+|+
T Consensus 75 ~a~~l~lkvlitlivg~~hmgg~Nw~Ipwa---g~---~~pdn~iyD~k~~~~~kkyvedlVk~--------yk~~ptI~ 140 (587)
T COG3934 75 PAGYLDLKVLITLIVGLKHMGGTNWRIPWA---GE---QSPDNVIYDPKFRGPGKKYVEDLVKP--------YKLDPTIA 140 (587)
T ss_pred hcccCcceEEEEEeecccccCcceeEeecC---CC---CCccccccchhhcccHHHHHHHHhhh--------hccChHHH
Confidence 999999999999999999999999999997 33 45678899999999999999999998 99999999
Q ss_pred EEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCccchhhccCcchhhccCCCCcc
Q 014151 208 AWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPEMWASALGSDFIRNSNNDNID 287 (430)
Q Consensus 208 ~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~w~~~~g~df~~~~~~~~iD 287 (430)
+|.+.|||.+....+...+..|..+|.++||.+||+|+|++|.+++.- +. +.|. -.-..+|
T Consensus 141 gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~sp~---~~---~~py-------------N~r~~vD 201 (587)
T COG3934 141 GWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPASPW---PQ---YAPY-------------NARFYVD 201 (587)
T ss_pred HHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecCCcCCcc---cc---cCCc-------------ccceeec
Confidence 999999999876667899999999999999999999999999765421 10 0110 0123689
Q ss_pred eEEeeecCCCCCCCcchhhhHHHHHHHHHHHHHhhhhcCC-CcEEEEecCCCCCCCCCChhHHHHHHHHHHHHHHHHHhc
Q 014151 288 FASVHIYPDHWFHDLEFEDDLKFVTKWMLSHIEDGDKELN-KPVFFTEYGLSNLIKGFEPSLRDKLYKTILDIVYKSAKR 366 (430)
Q Consensus 288 ~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~a~~~~g-kPv~v~EfG~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 366 (430)
+.++|.|+ +|..+. ..++...|...++...+. .| +||+++|||.+...... +-.-+..+....++.
T Consensus 202 ya~~hLY~-hyd~sl----~~r~s~~yg~~~l~i~~~-~g~~pV~leefGfsta~g~e----~s~ayfiw~~lal~~--- 268 (587)
T COG3934 202 YAANHLYR-HYDTSL----VSRVSTVYGKPYLDIPTI-MGWQPVNLEEFGFSTAFGQE----NSPAYFIWIRLALDT--- 268 (587)
T ss_pred cccchhhh-hccCCh----hheeeeeecchhhccchh-cccceeeccccCCccccccc----ccchhhhhhhhHHhh---
Confidence 99999998 454321 123334556666677765 77 99999999998875321 112222333323332
Q ss_pred CCCcccceeeeeccCCC------ccC---CCCceEEcCCCccH
Q 014151 367 KRSGAGALIWQLFVEGM------EEY---NDDFGIVPWERTST 400 (430)
Q Consensus 367 ~~~~~G~~~W~~~~~~~------~~~---~dg~~i~~~~~~~~ 400 (430)
+..|+++||+.+... .+| ..+|+|.-.|+|..
T Consensus 269 --ggdGaLiwclsdf~~gsdd~ey~w~p~el~fgiIradgpek 309 (587)
T COG3934 269 --GGDGALIWCLSDFHLGSDDSEYTWGPMELEFGIIRADGPEK 309 (587)
T ss_pred --cCCceEEEEecCCccCCCCCCCccccccceeeeecCCCchh
Confidence 478999999998642 234 36788887776644
No 3
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.94 E-value=4.8e-25 Score=235.79 Aligned_cols=289 Identities=17% Similarity=0.310 Sum_probs=192.5
Q ss_pred CCCCc--EEEeCCeEEECCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCC
Q 014151 37 PEMGF--VTRNGTHFMLDGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQF 114 (430)
Q Consensus 37 ~~~gf--v~~~g~~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~ 114 (430)
.+.|| |+++++.|++||+|++++|+|.|..........+.+.++++|+.||++|+|+||+.. ++.
T Consensus 271 ~~~GfR~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh-----~p~-------- 337 (604)
T PRK10150 271 LRFGIRSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSH-----YPY-------- 337 (604)
T ss_pred eeeEEEEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEecc-----CCC--------
Confidence 45688 666789999999999999999876543322345788899999999999999999932 210
Q ss_pred ChHHHHHHHHHHHHHHHcCCEEEEeccCCcc---cCCCcchhhhhhhhhCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHh
Q 014151 115 DERVFKALDHVIVEARKNGVRLLLSLVNNLQ---AYGGKTQYVNWAWEEGIGISSSN-DSFFFDPSIHKYFKHYVKTVLT 190 (430)
Q Consensus 115 de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~---~~gg~~~y~~W~~~~G~~~~~~~-~~f~~d~~~~~~~~~~~~~lv~ 190 (430)
+ .+++++|+++||+|+-.+.. |. ..+.. + .+ + ...... .....+|+.++.+++.++.++.
T Consensus 338 ~-------~~~~~~cD~~GllV~~E~p~-~~~~~~~~~~--~-~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~mv~ 401 (604)
T PRK10150 338 S-------EEMLDLADRHGIVVIDETPA-VGLNLSFGAG--L-EA----G-NKPKETYSEEAVNGETQQAHLQAIRELIA 401 (604)
T ss_pred C-------HHHHHHHHhcCcEEEEeccc-cccccccccc--c-cc----c-ccccccccccccchhHHHHHHHHHHHHHH
Confidence 1 26799999999999876532 21 01100 0 00 0 000000 0112357889999999999999
Q ss_pred ccCCcccccccCCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCccchh
Q 014151 191 RKNTITGVEYRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPEMWA 270 (430)
Q Consensus 191 R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~w~ 270 (430)
| ++|||+|++|.++||+... .+....|+++|.+.+|++||+|+|+.+.... . .+ ++
T Consensus 402 r--------~~NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~~~~~-~--~~-----~~---- 457 (604)
T PRK10150 402 R--------DKNHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCVNVMF-A--TP-----DT---- 457 (604)
T ss_pred h--------ccCCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEEeccc-C--Cc-----cc----
Confidence 9 9999999999999998753 2356789999999999999999999875211 0 00 00
Q ss_pred hccCcchhhccCCCCcceEEeeecCCCCCC-CcchhhhHHHHHHHHHHHHHhhhhcCCCcEEEEecCCCCC-------CC
Q 014151 271 SALGSDFIRNSNNDNIDFASVHIYPDHWFH-DLEFEDDLKFVTKWMLSHIEDGDKELNKPVFFTEYGLSNL-------IK 342 (430)
Q Consensus 271 ~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~-~~~~~~~~~~~~~~l~~~~~~a~~~~gkPv~v~EfG~~~~-------~~ 342 (430)
....+.+|++++|.|+. |.. .++.. ....++...+....+..+||++++|||+... ..
T Consensus 458 ---------~~~~~~~Dv~~~N~Y~~-wy~~~~~~~----~~~~~~~~~~~~~~~~~~kP~~isEyg~~~~~~~h~~~~~ 523 (604)
T PRK10150 458 ---------DTVSDLVDVLCLNRYYG-WYVDSGDLE----TAEKVLEKELLAWQEKLHKPIIITEYGADTLAGLHSMYDD 523 (604)
T ss_pred ---------ccccCcccEEEEcccce-ecCCCCCHH----HHHHHHHHHHHHHHHhcCCCEEEEccCCccccccccCCCC
Confidence 01235689999999886 432 12211 1122233322222222489999999996542 12
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhcCCCcccceeeeeccC----CCccC-CCCceEEcCC
Q 014151 343 GFEPSLRDKLYKTILDIVYKSAKRKRSGAGALIWQLFVE----GMEEY-NDDFGIVPWE 396 (430)
Q Consensus 343 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~----~~~~~-~dg~~i~~~~ 396 (430)
..+++.+..+++..++.+.+ .+.++|.++|+|.|. +...+ ++..+|+..+
T Consensus 524 ~~~ee~q~~~~~~~~~~~~~----~p~~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~~~d 578 (604)
T PRK10150 524 MWSEEYQCAFLDMYHRVFDR----VPAVVGEQVWNFADFATSQGILRVGGNKKGIFTRD 578 (604)
T ss_pred CCCHHHHHHHHHHHHHHHhc----CCceEEEEEEeeeccCCCCCCcccCCCcceeEcCC
Confidence 34688888888877765543 357999999999983 22111 2556777554
No 4
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.90 E-value=7.4e-22 Score=193.67 Aligned_cols=158 Identities=22% Similarity=0.309 Sum_probs=112.9
Q ss_pred EEEeCCeEEECCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHH
Q 014151 42 VTRNGTHFMLDGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKA 121 (430)
Q Consensus 42 v~~~g~~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~ 121 (430)
|.+++++|++||||++++|+|.+..........+.+.++++|+.||++|+|+||+... + +.
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~-----p---~~----------- 61 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHY-----P---PS----------- 61 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS----------S-----------
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccc-----c---Cc-----------
Confidence 6899999999999999999997653322223457899999999999999999999432 1 11
Q ss_pred HHHHHHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCccccccc
Q 014151 122 LDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYR 201 (430)
Q Consensus 122 lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk 201 (430)
.+++++|+++||.|+..+... .++ .|.. .| .......+++.++.+++.++.++.| ++
T Consensus 62 -~~~~~~cD~~GilV~~e~~~~--~~~------~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~v~~--------~~ 118 (298)
T PF02836_consen 62 -PRFYDLCDELGILVWQEIPLE--GHG------SWQD-FG-----NCNYDADDPEFRENAEQELREMVRR--------DR 118 (298)
T ss_dssp -HHHHHHHHHHT-EEEEE-S-B--SCT------SSSS-TS-----CTSCTTTSGGHHHHHHHHHHHHHHH--------HT
T ss_pred -HHHHHHHhhcCCEEEEecccc--ccC------cccc-CC-----ccccCCCCHHHHHHHHHHHHHHHHc--------Cc
Confidence 267999999999998776431 011 0100 00 0012245788999999999999999 99
Q ss_pred CCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEcc
Q 014151 202 NDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGL 250 (430)
Q Consensus 202 ~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~ 250 (430)
|||+|++|.++||+ ....+++++.+.+|++||+|+|+.++
T Consensus 119 NHPSIi~W~~gNE~---------~~~~~~~~l~~~~k~~DptRpv~~~~ 158 (298)
T PF02836_consen 119 NHPSIIMWSLGNES---------DYREFLKELYDLVKKLDPTRPVTYAS 158 (298)
T ss_dssp T-TTEEEEEEEESS---------HHHHHHHHHHHHHHHH-TTSEEEEET
T ss_pred CcCchheeecCccC---------ccccchhHHHHHHHhcCCCCceeecc
Confidence 99999999999999 35677899999999999999999864
No 5
>TIGR03356 BGL beta-galactosidase.
Probab=99.87 E-value=7.4e-21 Score=194.66 Aligned_cols=279 Identities=14% Similarity=0.218 Sum_probs=188.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccC-CCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchh
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQIS-PGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQY 153 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~-pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y 153 (430)
...++++|++.|+++|+|++|+-+ +|+.++|. +|.+|++.++.+|.+|+.|.++||.+|++|++ |+ .
T Consensus 52 ~y~~y~eDi~l~~~~G~~~~R~si----~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H-fd-------~ 119 (427)
T TIGR03356 52 HYHRYEEDVALMKELGVDAYRFSI----AWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH-WD-------L 119 (427)
T ss_pred HHHhHHHHHHHHHHcCCCeEEccc----chhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc-CC-------c
Confidence 357899999999999999999822 59999998 68899999999999999999999999999986 43 2
Q ss_pred hhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCC---------C---
Q 014151 154 VNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSD---------P--- 221 (430)
Q Consensus 154 ~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~---------~--- 221 (430)
|.|....|+ |.+++..+.|.+|++.+++| |++ .|-.|++.|||..... +
T Consensus 120 P~~l~~~gG---------w~~~~~~~~f~~ya~~~~~~--------~~d--~v~~w~t~NEp~~~~~~~y~~G~~~P~~~ 180 (427)
T TIGR03356 120 PQALEDRGG---------WLNRDTAEWFAEYAAVVAER--------LGD--RVKHWITLNEPWCSAFLGYGLGVHAPGLR 180 (427)
T ss_pred cHHHHhcCC---------CCChHHHHHHHHHHHHHHHH--------hCC--cCCEEEEecCcceecccchhhccCCCCCc
Confidence 566544332 77899999999999999999 998 5777999999985321 0
Q ss_pred ChH-H------HHHHHHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCcc-------------chhh---ccCcchh
Q 014151 222 SGD-T------LQDWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPE-------------MWAS---ALGSDFI 278 (430)
Q Consensus 222 ~~~-~------~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~-------------~w~~---~~g~df~ 278 (430)
+.. . +..-..+..+++|+..|+..|.+-....+.. |.. .+|. .|.. ..| ++.
T Consensus 181 ~~~~~~~~~hnll~Aha~A~~~~~~~~~~~~IGi~~~~~~~~--P~~--~~~~d~~aa~~~~~~~~~~f~d~~~~G-~yP 255 (427)
T TIGR03356 181 DLRAALQAAHHLLLAHGLAVQALRANGPGAQVGIVLNLTPVY--PAS--DSPEDVAAARRADGLLNRWFLDPLLKG-RYP 255 (427)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeee--eCC--CCHHHHHHHHHHHHHHhhhhhHHHhCC-CCC
Confidence 101 1 1112345667788888876665433221111 100 0111 1110 011 110
Q ss_pred ----h-------------ccCCCCcceEEeeecCCCCCCCc------------chh-hhHHH--HHHHHHHHHHhhhhcC
Q 014151 279 ----R-------------NSNNDNIDFASVHIYPDHWFHDL------------EFE-DDLKF--VTKWMLSHIEDGDKEL 326 (430)
Q Consensus 279 ----~-------------~~~~~~iD~~s~H~Y~~~w~~~~------------~~~-~~~~~--~~~~l~~~~~~a~~~~ 326 (430)
. ......+||+++++|........ ..+ ....| ...-|+..+....+.+
T Consensus 256 ~~~~~~l~~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~rY 335 (427)
T TIGR03356 256 EDLLEYLGDAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTGAGFVEVPEGVPKTAMGWEVYPEGLYDLLLRLKEDY 335 (427)
T ss_pred HHHHHHhccCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCCCCccccCCCCCcCCCCCeechHHHHHHHHHHHHhc
Confidence 0 00124679999999975421100 000 00001 1122444444443347
Q ss_pred CC-cEEEEecCCCCCCC----CCChhHHHHHHHHHHHHHHHHHhcCCCcccceeeeeccCCCccCCCCce
Q 014151 327 NK-PVFFTEYGLSNLIK----GFEPSLRDKLYKTILDIVYKSAKRKRSGAGALIWQLFVEGMEEYNDDFG 391 (430)
Q Consensus 327 gk-Pv~v~EfG~~~~~~----~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~~~~~~~dg~~ 391 (430)
++ ||+|+|.|...... ...+..|..|++++++.+.++..+|..+.|++.|++.|+ .+|.+||.
T Consensus 336 ~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~Wsl~Dn--~ew~~gy~ 403 (427)
T TIGR03356 336 PGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVDVRGYFVWSLLDN--FEWAEGYS 403 (427)
T ss_pred CCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEecccccc--cchhcccc
Confidence 76 79999999975321 134679999999999999999999999999999999998 78877765
No 6
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=99.86 E-value=2.6e-20 Score=192.63 Aligned_cols=305 Identities=15% Similarity=0.167 Sum_probs=204.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccC--CCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcch
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQIS--PGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQ 152 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~--pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~ 152 (430)
...++++|++.|+++|+|+.|+ +. +|++++|. ++.+|+++++.++++|+.+.++||.++++|++ |+
T Consensus 71 ~Yhry~eDi~Lm~~lG~~aYRf---SI-sWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H-~d------- 138 (478)
T PRK09593 71 MYHHYKEDIALFAEMGFKTYRM---SI-AWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITH-FD------- 138 (478)
T ss_pred hHHhhHHHHHHHHHcCCCEEEE---ec-chhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecc-cC-------
Confidence 4688999999999999999998 33 59999986 45689999999999999999999999999986 64
Q ss_pred hhhhhhhh-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCC-----------
Q 014151 153 YVNWAWEE-GIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSD----------- 220 (430)
Q Consensus 153 y~~W~~~~-G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~----------- 220 (430)
.|.|.... |+ |.++++.+.|.+|.+.+++| |++ .|--|.++|||.+...
T Consensus 139 lP~~L~~~~GG---------W~n~~~v~~F~~YA~~~~~~--------fgd--rVk~WiT~NEP~~~~~~~~~~~g~~~~ 199 (478)
T PRK09593 139 CPMHLIEEYGG---------WRNRKMVGFYERLCRTLFTR--------YKG--LVKYWLTFNEINMILHAPFMGAGLYFE 199 (478)
T ss_pred CCHHHHhhcCC---------CCChHHHHHHHHHHHHHHHH--------hcC--cCCEEEeecchhhhhcccccccCcccC
Confidence 26677543 43 88999999999999999999 998 5888999999985311
Q ss_pred C--Ch--HHHHHH------HHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCcc------------chhh---ccC-
Q 014151 221 P--SG--DTLQDW------IDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPE------------MWAS---ALG- 274 (430)
Q Consensus 221 ~--~~--~~~~~w------~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~------------~w~~---~~g- 274 (430)
+ .. ..++.- ...+.+++|+..|+-.|.+-....+.. |.. .+|. .|.. ..|
T Consensus 200 ~g~~~~~~~~~a~h~~llAHa~A~~~~~~~~~~g~VGi~~~~~~~~--P~~--~~~~D~~aa~~~~~~~~~fld~~~~G~ 275 (478)
T PRK09593 200 EGENKEQVKYQAAHHELVASAIATKIAHEVDPENKVGCMLAAGQYY--PNT--CHPEDVWAAMKEDRENYFFIDVQARGE 275 (478)
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeE--eCC--CCHHHHHHHHHHHHHhhhhhhhhhCCC
Confidence 0 00 011211 235566788888875554433221111 100 0110 0100 001
Q ss_pred -------------c--chh----hccCCCCcceEEeeecCCCCCCCcc------h---------h--hh--H--HHHHHH
Q 014151 275 -------------S--DFI----RNSNNDNIDFASVHIYPDHWFHDLE------F---------E--DD--L--KFVTKW 314 (430)
Q Consensus 275 -------------~--df~----~~~~~~~iD~~s~H~Y~~~w~~~~~------~---------~--~~--~--~~~~~~ 314 (430)
. .|. ..+....+||+++++|......... . + .. . +....-
T Consensus 276 YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~G 355 (478)
T PRK09593 276 YPNYAKKRFEREGITIEMTEEDLELLKENTVDFISFSYYSSRVASGDPKVNEKTAGNIFASLKNPYLKASEWGWQIDPLG 355 (478)
T ss_pred ccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCCCCCCCccccccCCCcccCCCCCEECHHH
Confidence 0 000 0011246799999999754321100 0 0 00 0 011122
Q ss_pred HHHHHHhhhhcCCCcEEEEecCCCCCCC-----CCChhHHHHHHHHHHHHHHHHHh-cCCCcccceeeeeccCCCccCCC
Q 014151 315 MLSHIEDGDKELNKPVFFTEYGLSNLIK-----GFEPSLRDKLYKTILDIVYKSAK-RKRSGAGALIWQLFVEGMEEYND 388 (430)
Q Consensus 315 l~~~~~~a~~~~gkPv~v~EfG~~~~~~-----~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~G~~~W~~~~~~~~~~~d 388 (430)
|+..+....+.+++||+|+|.|+..... ...+..|..|+++++..+.+++. ++..+.|+++|++.|+ .+|..
T Consensus 356 l~~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn--~EW~~ 433 (478)
T PRK09593 356 LRITLNTIWDRYQKPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDL--VSAGT 433 (478)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHh--hcccC
Confidence 4444444433488999999999975321 13477899999999999999985 8999999999999998 88988
Q ss_pred C-----ceEEcCCCc-----cHHHHHHHHHHHHhhccc
Q 014151 389 D-----FGIVPWERT-----STYKLLTEQSCGLGRISR 416 (430)
Q Consensus 389 g-----~~i~~~~~~-----~~~~~~~~~~~~~~~~~~ 416 (430)
| |++++.|-. +..+..|+++..++.+-.
T Consensus 434 G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ii~ 471 (478)
T PRK09593 434 GEMKKRYGFIYVDRDNEGKGTLKRSKKKSFDWYKKVIA 471 (478)
T ss_pred CCccCeeceEEECCCCCCCcccceecccHHHHHHHHHH
Confidence 8 556554412 235888888888887754
No 7
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.86 E-value=2.2e-20 Score=188.92 Aligned_cols=271 Identities=20% Similarity=0.321 Sum_probs=151.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhh
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYV 154 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~ 154 (430)
+.+.+++||+.|+++|+|+||+..| .|..+||++|.|| |+.||++|+.|+++||+|||.+... ..|
T Consensus 8 ~~e~~~~d~~~m~~~G~n~vri~~~---~W~~lEP~eG~yd---F~~lD~~l~~a~~~Gi~viL~~~~~--------~~P 73 (374)
T PF02449_consen 8 PEEEWEEDLRLMKEAGFNTVRIGEF---SWSWLEPEEGQYD---FSWLDRVLDLAAKHGIKVILGTPTA--------APP 73 (374)
T ss_dssp -CCHHHHHHHHHHHHT-SEEEE-CC---EHHHH-SBTTB------HHHHHHHHHHHCTT-EEEEEECTT--------TS-
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEe---chhhccCCCCeee---cHHHHHHHHHHHhccCeEEEEeccc--------ccc
Confidence 4689999999999999999998655 3888999999998 7889999999999999999976431 124
Q ss_pred hhhhh----------hCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCCC-
Q 014151 155 NWAWE----------EGIGI--SSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSDP- 221 (430)
Q Consensus 155 ~W~~~----------~G~~~--~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~- 221 (430)
.|... .|... +....-.+.+|.+++.++++++.+++| |+++|+|++|++.|||.+..+.
T Consensus 74 ~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~--------y~~~p~vi~~~i~NE~~~~~~~~ 145 (374)
T PF02449_consen 74 AWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAER--------YGDHPAVIGWQIDNEPGYHRCYS 145 (374)
T ss_dssp HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHH--------HTTTTTEEEEEECCSTTCTS--S
T ss_pred cchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhh--------ccccceEEEEEeccccCcCcCCC
Confidence 55432 12111 011222356789999999999999999 9999999999999999773210
Q ss_pred --------------------------------------------------C-----------hHHHHHHHHHHHHHHHhc
Q 014151 222 --------------------------------------------------S-----------GDTLQDWIDEMSAFVKSI 240 (430)
Q Consensus 222 --------------------------------------------------~-----------~~~~~~w~~~~~~~Ir~~ 240 (430)
. .+.+.++++.+++.||+.
T Consensus 146 ~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~ 225 (374)
T PF02449_consen 146 PACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIREY 225 (374)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 134556677899999999
Q ss_pred CCCCEEEEccCCccCCCCCCCcccCccchhhccCcchhhccCCCCcceEEeeecCCC-CCCCcchhhhHHHHHHHHHHHH
Q 014151 241 DKKHLVTVGLEGFYGPKSPKRLTVNPEMWASALGSDFIRNSNNDNIDFASVHIYPDH-WFHDLEFEDDLKFVTKWMLSHI 319 (430)
Q Consensus 241 dp~~lV~~G~~g~~~~~~~~~~~~np~~w~~~~g~df~~~~~~~~iD~~s~H~Y~~~-w~~~~~~~~~~~~~~~~l~~~~ 319 (430)
+|+++|+....+... .+.|+.. ....+|+++++.||.. +...........+. ....
T Consensus 226 ~p~~~vt~n~~~~~~-----------------~~~d~~~--~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~----~dl~ 282 (374)
T PF02449_consen 226 DPDHPVTTNFMGSWF-----------------NGIDYFK--WAKYLDVVSWDSYPDGSFDFYDDDPYSLAFN----HDLM 282 (374)
T ss_dssp STT-EEE-EE-TT--------------------SS-HHH--HGGGSSSEEEEE-HHHHHTTTT--TTHHHHH----HHHH
T ss_pred CCCceEEeCcccccc-----------------CcCCHHH--HHhhCCcceeccccCcccCCCCCCHHHHHHH----HHHH
Confidence 999999975433100 0112222 1357899999999971 00000011111111 1222
Q ss_pred HhhhhcCCCcEEEEecCCCCCCC-CCChhHHHHHHHHHHHHHHHHHhcCCCcccceeeeeccCCCccCCCCceEEcCCC
Q 014151 320 EDGDKELNKPVFFTEYGLSNLIK-GFEPSLRDKLYKTILDIVYKSAKRKRSGAGALIWQLFVEGMEEYNDDFGIVPWER 397 (430)
Q Consensus 320 ~~a~~~~gkPv~v~EfG~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~~~~~~~dg~~i~~~~~ 397 (430)
+.. + .+||++|.|.-....+- ......+...++.+. +.+... +..|.++|+|.......-...++|..-++
T Consensus 283 R~~-~-~~kpf~v~E~~~g~~~~~~~~~~~~pg~~~~~~---~~~~A~--Ga~~i~~~~wr~~~~g~E~~~~g~~~~dg 354 (374)
T PF02449_consen 283 RSL-A-KGKPFWVMEQQPGPVNWRPYNRPPRPGELRLWS---WQAIAH--GADGILFWQWRQSRFGAEQFHGGLVDHDG 354 (374)
T ss_dssp HHH-T-TT--EEEEEE--S--SSSSS-----TTHHHHHH---HHHHHT--T-S-EEEC-SB--SSSTTTTS--SB-TTS
T ss_pred Hhh-c-CCCceEeecCCCCCCCCccCCCCCCCCHHHHHH---HHHHHH--hCCeeEeeeccCCCCCchhhhcccCCccC
Confidence 222 2 79999999996553220 011111222233222 222223 58899999998753322123577777666
No 8
>PLN02998 beta-glucosidase
Probab=99.86 E-value=2.8e-20 Score=192.69 Aligned_cols=306 Identities=15% Similarity=0.203 Sum_probs=203.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccC-CCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchh
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQIS-PGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQY 153 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~-pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y 153 (430)
...++++|++.||++|+|+.|+ +. +|++++|. .|.+|+++++.++++|+.+.++||.+++||++ |+ .
T Consensus 80 ~Yhry~EDi~lmk~lG~~~YRf---SI-sWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H-~d-------l 147 (497)
T PLN02998 80 QYHKYKEDVKLMADMGLEAYRF---SI-SWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHH-FD-------L 147 (497)
T ss_pred HHHhhHHHHHHHHHcCCCeEEe---ec-cHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecC-CC-------C
Confidence 4678999999999999999998 33 59999985 56799999999999999999999999999986 64 2
Q ss_pred hhhhhhh-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCC---------CCh
Q 014151 154 VNWAWEE-GIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSD---------PSG 223 (430)
Q Consensus 154 ~~W~~~~-G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~---------~~~ 223 (430)
|.|.... |+ |.+++..+.|.+|.+.+++| |+| .|--|.++|||.+... +..
T Consensus 148 P~~L~~~yGG---------W~n~~~v~~F~~YA~~~~~~--------fgd--rVk~WiT~NEP~~~~~~gy~~G~~~Pg~ 208 (497)
T PLN02998 148 PQALEDEYGG---------WLSQEIVRDFTAYADTCFKE--------FGD--RVSHWTTINEVNVFALGGYDQGITPPAR 208 (497)
T ss_pred CHHHHHhhCC---------cCCchHHHHHHHHHHHHHHH--------hcC--cCCEEEEccCcchhhhcchhhcccCCCc
Confidence 5677653 43 88999999999999999999 998 6888999999995431 000
Q ss_pred ----------------HHHHHH------HHHHHHHHHhc---CCCCEEEEccCCccCCCCCCCcccCcc-----------
Q 014151 224 ----------------DTLQDW------IDEMSAFVKSI---DKKHLVTVGLEGFYGPKSPKRLTVNPE----------- 267 (430)
Q Consensus 224 ----------------~~~~~w------~~~~~~~Ir~~---dp~~lV~~G~~g~~~~~~~~~~~~np~----------- 267 (430)
+.++.- ..++...+|+. +++..|.+-....+. .|.. .+|.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~~~~--~P~~--~~~~D~~aa~~~~~~ 284 (497)
T PLN02998 209 CSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISVYTYGA--VPLT--NSVKDKQATARVNDF 284 (497)
T ss_pred cccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeCCee--ecCC--CCHHHHHHHHHHHHH
Confidence 011211 22444566765 565555443221111 1100 0111
Q ss_pred --chhh---ccCcchh------------------hccCCCCcceEEeeecCCCCCCCc--c--h--h-------------
Q 014151 268 --MWAS---ALGSDFI------------------RNSNNDNIDFASVHIYPDHWFHDL--E--F--E------------- 305 (430)
Q Consensus 268 --~w~~---~~g~df~------------------~~~~~~~iD~~s~H~Y~~~w~~~~--~--~--~------------- 305 (430)
.|.. ..| ++. ..+-...+||+++++|........ . . .
T Consensus 285 ~~~~f~dp~~~G-~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (497)
T PLN02998 285 YIGWILHPLVFG-DYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKDNSSSLKPNLQDFNTDIAVEMTLV 363 (497)
T ss_pred HhhhhhhHHhCC-CcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCcccccCCCcCCCCccccccccccccccC
Confidence 1100 011 000 000123579999999965322100 0 0 0
Q ss_pred --hh----HHHHHHHHHHHHHhhhhcCCC-cEEEEecCCCCCCC-CCChhHHHHHHHHHHHHHHHHHhcCCCcccceeee
Q 014151 306 --DD----LKFVTKWMLSHIEDGDKELNK-PVFFTEYGLSNLIK-GFEPSLRDKLYKTILDIVYKSAKRKRSGAGALIWQ 377 (430)
Q Consensus 306 --~~----~~~~~~~l~~~~~~a~~~~gk-Pv~v~EfG~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~ 377 (430)
.. .+....-|+..+....+.+++ ||+|+|.|+..... ...+..|..|++++++.+.+++.+|..+.|++.|+
T Consensus 364 ~~~~~~~~w~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WS 443 (497)
T PLN02998 364 GNTSIENEYANTPWSLQQILLYVKETYGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWS 443 (497)
T ss_pred CCcCCCCCCEEChHHHHHHHHHHHHHcCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecc
Confidence 00 000112234444444334777 69999999976421 23578999999999999999999999999999999
Q ss_pred eccCCCccCCCCce----EEcCCC--ccHHHHHHHHHHHHhhccccc
Q 014151 378 LFVEGMEEYNDDFG----IVPWER--TSTYKLLTEQSCGLGRISRLN 418 (430)
Q Consensus 378 ~~~~~~~~~~dg~~----i~~~~~--~~~~~~~~~~~~~~~~~~~~~ 418 (430)
+.|+ .+|..||+ +++.|- ++..++.|+++..++.+-...
T Consensus 444 l~Dn--fEW~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~wy~~ii~~~ 488 (497)
T PLN02998 444 LMDV--FELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWYSSFLKGT 488 (497)
T ss_pred chhh--hchhccccCccceEEECCCCCCcceecccHHHHHHHHHhcc
Confidence 9998 78877765 444331 223588888888888775443
No 9
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=99.86 E-value=7.4e-20 Score=189.15 Aligned_cols=307 Identities=13% Similarity=0.128 Sum_probs=204.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccC--CCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcch
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQIS--PGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQ 152 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~--pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~ 152 (430)
...++++|++.|+++|+|+.|+ +. +|++++|. ++.+|+++++.++++|+.+.++||.+++||++ |+
T Consensus 65 ~Yhry~eDi~Lm~~lG~~~yRf---SI-sWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H-~d------- 132 (476)
T PRK09589 65 FYHRYKEDIALFAEMGFKCFRT---SI-AWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSH-FE------- 132 (476)
T ss_pred HHHhhHHHHHHHHHcCCCEEEe---cc-chhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC-CC-------
Confidence 4678999999999999999998 33 59999986 45689999999999999999999999999986 64
Q ss_pred hhhhhhhh-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCC-----------C
Q 014151 153 YVNWAWEE-GIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMS-----------D 220 (430)
Q Consensus 153 y~~W~~~~-G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~-----------~ 220 (430)
.|.|.... |+ |.++++.+.|.+|.+.+++| |+| .|--|.++|||.+.. .
T Consensus 133 lP~~L~~~yGG---------W~n~~~i~~F~~YA~~~f~~--------fgd--rVk~WiT~NEp~~~~~~~~~~~~~~~~ 193 (476)
T PRK09589 133 MPYHLVTEYGG---------WRNRKLIDFFVRFAEVVFTR--------YKD--KVKYWMTFNEINNQANFSEDFAPFTNS 193 (476)
T ss_pred CCHHHHHhcCC---------cCChHHHHHHHHHHHHHHHH--------hcC--CCCEEEEecchhhhhccccccCCcccc
Confidence 25676543 43 88999999999999999999 998 588899999998431 0
Q ss_pred ----CC---h-H-HHHHH------HHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCcc------------chhh--
Q 014151 221 ----PS---G-D-TLQDW------IDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPE------------MWAS-- 271 (430)
Q Consensus 221 ----~~---~-~-~~~~w------~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~------------~w~~-- 271 (430)
+. . . .++.- ..++.+++|+..|+..|.+-...... .|.. .+|. .|..
T Consensus 194 g~~~~pg~~~~~~~~~~~h~~llAha~A~~~~~~~~~~~~iG~~~~~~~~--~P~~--~~~~d~~aa~~~~~~~~~f~d~ 269 (476)
T PRK09589 194 GILYSPGEDREQIMYQAAHYELVASALAVKTGHEINPDFQIGCMIAMCPI--YPLT--CAPNDMMMATKAMHRRYWFTDV 269 (476)
T ss_pred ccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeCCee--eeCC--CCHHHHHHHHHHHHhccceecc
Confidence 00 0 0 11111 23455677888887555432211110 1100 0110 0100
Q ss_pred -ccC--------------c--chh----hccCCCCcceEEeeecCCCCCCC---cc---h---------h--hhH----H
Q 014151 272 -ALG--------------S--DFI----RNSNNDNIDFASVHIYPDHWFHD---LE---F---------E--DDL----K 309 (430)
Q Consensus 272 -~~g--------------~--df~----~~~~~~~iD~~s~H~Y~~~w~~~---~~---~---------~--~~~----~ 309 (430)
..| . .|. ..+....+||+++++|....... .. . + ... +
T Consensus 270 ~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~ 349 (476)
T PRK09589 270 HVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDYIGFSYYMSFATKFHEDNPQLDYVETRDLVSNPYVKASEWGWQ 349 (476)
T ss_pred eeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCCCCcccccccccCCCcccCCCCCc
Confidence 001 0 010 00113457999999997643210 00 0 0 000 0
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEecCCCCCCC-----CCChhHHHHHHHHHHHHHHHHH-hcCCCcccceeeeeccCCC
Q 014151 310 FVTKWMLSHIEDGDKELNKPVFFTEYGLSNLIK-----GFEPSLRDKLYKTILDIVYKSA-KRKRSGAGALIWQLFVEGM 383 (430)
Q Consensus 310 ~~~~~l~~~~~~a~~~~gkPv~v~EfG~~~~~~-----~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~G~~~W~~~~~~~ 383 (430)
....-|+..+....+.+++||+|+|.|+..... ...+..|..|+++++..+.+++ .+|..+.|++.|++.|+
T Consensus 350 i~P~Gl~~~L~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn-- 427 (476)
T PRK09589 350 IDPAGLRYSLNWFWDHYQLPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDL-- 427 (476)
T ss_pred cCcHHHHHHHHHHHHhcCCCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeecccccc--
Confidence 111224444444444488999999999985321 1346799999999999999998 78999999999999998
Q ss_pred ccCCCC-ce----EEcCCCc-----cHHHHHHHHHHHHhhccccc
Q 014151 384 EEYNDD-FG----IVPWERT-----STYKLLTEQSCGLGRISRLN 418 (430)
Q Consensus 384 ~~~~dg-~~----i~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 418 (430)
.+|.+| |+ +++.|-. +..++.|+++..++.+-..|
T Consensus 428 ~Ew~~G~y~~RfGlv~VD~~~~~~~t~~R~pK~S~~wy~~~i~~n 472 (476)
T PRK09589 428 VSAGTGEMKKRYGFIYVDKDNEGKGTLERSRKKSFYWYRDVIANN 472 (476)
T ss_pred ccccCCccccceeeEEEcCCCCCCcccccccccHHHHHHHHHHhc
Confidence 789887 54 4444311 23588899998888775443
No 10
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.86 E-value=6e-20 Score=205.33 Aligned_cols=236 Identities=19% Similarity=0.238 Sum_probs=160.0
Q ss_pred CCCCc--EEEeCCeEEECCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCC
Q 014151 37 PEMGF--VTRNGTHFMLDGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQF 114 (430)
Q Consensus 37 ~~~gf--v~~~g~~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~ 114 (430)
.+.|| |+++++.|++||+|++++|+|.|..........+.+.++++|+.||++|+|+||++. ++. .
T Consensus 313 ~~~GfR~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sH-----yP~---~---- 380 (1021)
T PRK10340 313 QRVGFRDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAH-----YPN---D---- 380 (1021)
T ss_pred eeeEEEEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecC-----CCC---C----
Confidence 46688 566789999999999999999874432222235789999999999999999999943 221 1
Q ss_pred ChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCC
Q 014151 115 DERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNT 194 (430)
Q Consensus 115 de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~ 194 (430)
.+++++|+++||+|+-...- +. . |. .. . .....+..+|...+.+.+.++.++.|
T Consensus 381 --------~~fydlcDe~GllV~dE~~~-e~-~-g~------~~-~-----~~~~~~~~~p~~~~~~~~~~~~mV~R--- 434 (1021)
T PRK10340 381 --------PRFYELCDIYGLFVMAETDV-ES-H-GF------AN-V-----GDISRITDDPQWEKVYVDRIVRHIHA--- 434 (1021)
T ss_pred --------HHHHHHHHHCCCEEEECCcc-cc-c-Cc------cc-c-----cccccccCCHHHHHHHHHHHHHHHHh---
Confidence 15689999999999775421 10 0 10 00 0 00011245688888999999999999
Q ss_pred cccccccCCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCccchhhccC
Q 014151 195 ITGVEYRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPEMWASALG 274 (430)
Q Consensus 195 ~tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~w~~~~g 274 (430)
++|||+|++|.++||.... .. +++|.+.+|++||.|+|+.....
T Consensus 435 -----drNHPSIi~WslGNE~~~g-----~~----~~~~~~~~k~~DptR~v~~~~~~---------------------- 478 (1021)
T PRK10340 435 -----QKNHPSIIIWSLGNESGYG-----CN----IRAMYHAAKALDDTRLVHYEEDR---------------------- 478 (1021)
T ss_pred -----CCCCCEEEEEECccCcccc-----HH----HHHHHHHHHHhCCCceEEeCCCc----------------------
Confidence 9999999999999998652 22 36889999999999999874210
Q ss_pred cchhhccCCCCcceEEeeecCCCCCCCcchhhhHHHHHHHHHHHHHhhhhcCCCcEEEEecCCCCCCCCCChhHHHHHHH
Q 014151 275 SDFIRNSNNDNIDFASVHIYPDHWFHDLEFEDDLKFVTKWMLSHIEDGDKELNKPVFFTEYGLSNLIKGFEPSLRDKLYK 354 (430)
Q Consensus 275 ~df~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~a~~~~gkPv~v~EfG~~~~~~~~~~~~r~~~~~ 354 (430)
.....|+++. +|+.. + .+..+ .....+||++++||+....++ .....+|.
T Consensus 479 -------~~~~~Dv~~~-~Y~~~-----------~----~~~~~---~~~~~~kP~i~~Ey~hamgn~---~g~~~~yw- 528 (1021)
T PRK10340 479 -------DAEVVDVIST-MYTRV-----------E----LMNEF---GEYPHPKPRILCEYAHAMGNG---PGGLTEYQ- 528 (1021)
T ss_pred -------Cccccceecc-ccCCH-----------H----HHHHH---HhCCCCCcEEEEchHhccCCC---CCCHHHHH-
Confidence 1135788886 35521 0 11111 111147999999999765432 11223333
Q ss_pred HHHHHHHHHHhcCCCcccceeeeeccCCC
Q 014151 355 TILDIVYKSAKRKRSGAGALIWQLFVEGM 383 (430)
Q Consensus 355 ~~~~~~~~~~~~~~~~~G~~~W~~~~~~~ 383 (430)
+.+.+ .+...|.++|.|.|++.
T Consensus 529 ---~~~~~----~p~l~GgfiW~~~D~~~ 550 (1021)
T PRK10340 529 ---NVFYK----HDCIQGHYVWEWCDHGI 550 (1021)
T ss_pred ---HHHHh----CCceeEEeeeecCcccc
Confidence 22322 45799999999999753
No 11
>PLN02814 beta-glucosidase
Probab=99.85 E-value=1.2e-19 Score=188.26 Aligned_cols=308 Identities=15% Similarity=0.231 Sum_probs=203.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccC-CCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchh
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQIS-PGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQY 153 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~-pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y 153 (430)
...++++|++.||++|+|+.|+ +. +|++++|. +|.+|+++++.++++|+.+.++||++++||++ |+ .
T Consensus 75 ~Yhry~EDI~L~k~lG~~ayRf---SI-sWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H-~d-------l 142 (504)
T PLN02814 75 GYHKYKEDVKLMAEMGLESFRF---SI-SWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYH-YD-------L 142 (504)
T ss_pred HHHhhHHHHHHHHHcCCCEEEE---ec-cHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecC-CC-------C
Confidence 4688999999999999999998 33 59999985 57899999999999999999999999999986 64 2
Q ss_pred hhhhhhh-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCC--------C---
Q 014151 154 VNWAWEE-GIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSD--------P--- 221 (430)
Q Consensus 154 ~~W~~~~-G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~--------~--- 221 (430)
|.|.... |+ |.+++..+.|.+|.+.+++| |+| .|--|.+.|||.+... +
T Consensus 143 P~~L~~~yGG---------W~n~~~i~~F~~YA~~~f~~--------fgd--rVk~WiT~NEP~~~~~~gy~~G~~pg~~ 203 (504)
T PLN02814 143 PQSLEDEYGG---------WINRKIIEDFTAFADVCFRE--------FGE--DVKLWTTINEATIFAIGSYGQGIRYGHC 203 (504)
T ss_pred CHHHHHhcCC---------cCChhHHHHHHHHHHHHHHH--------hCC--cCCEEEeccccchhhhcccccCcCCCCC
Confidence 6677653 43 88999999999999999999 998 5888999999985421 0
Q ss_pred C-------------hHHHHHH------HHHHHHHHHhc---CCCCEEEEccCCccCCCCCCCcccCcc------------
Q 014151 222 S-------------GDTLQDW------IDEMSAFVKSI---DKKHLVTVGLEGFYGPKSPKRLTVNPE------------ 267 (430)
Q Consensus 222 ~-------------~~~~~~w------~~~~~~~Ir~~---dp~~lV~~G~~g~~~~~~~~~~~~np~------------ 267 (430)
. .+.++.- ..+...++|+. .|+-.|.+-....+. .|.. .+|.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~--~P~~--~~~~D~~Aa~~~~~~~ 279 (504)
T PLN02814 204 SPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGL--SPYT--NSKDDEIATQRAKAFL 279 (504)
T ss_pred CcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCcee--ecCC--CCHHHHHHHHHHHHHh
Confidence 0 0111211 23455567764 666455433221111 1100 0111
Q ss_pred -chhh---ccCcchh------------------hccCCCCcceEEeeecCCCCCCC---c--------ch--h-------
Q 014151 268 -MWAS---ALGSDFI------------------RNSNNDNIDFASVHIYPDHWFHD---L--------EF--E------- 305 (430)
Q Consensus 268 -~w~~---~~g~df~------------------~~~~~~~iD~~s~H~Y~~~w~~~---~--------~~--~------- 305 (430)
.|.. ..| ++. .......+||+++++|....... . .. .
T Consensus 280 ~~~f~dp~~~G-~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (504)
T PLN02814 280 YGWMLKPLVFG-DYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPAPSIFPSMNEGFFTDMGAYIIS 358 (504)
T ss_pred hhhhhHHHhCC-CccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCCCCcccccCCCcccccccccCC
Confidence 1100 001 010 00012457999999996532110 0 00 0
Q ss_pred --hh--HHH--HHHHHHHHHHhhhhcCCC-cEEEEecCCCCCCC-CCChhHHHHHHHHHHHHHHHHHhcCCCcccceeee
Q 014151 306 --DD--LKF--VTKWMLSHIEDGDKELNK-PVFFTEYGLSNLIK-GFEPSLRDKLYKTILDIVYKSAKRKRSGAGALIWQ 377 (430)
Q Consensus 306 --~~--~~~--~~~~l~~~~~~a~~~~gk-Pv~v~EfG~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~ 377 (430)
.. ..| ...-|+..+....+.+++ ||+|+|.|+..... ...+..|..|++++++.+.+++.+|..+.|++.|+
T Consensus 359 ~~~~~~~gWei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WS 438 (504)
T PLN02814 359 AGNSSFFEFDATPWGLEGILEHIKQSYNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWS 438 (504)
T ss_pred CCCcCCCCCeECcHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecc
Confidence 00 000 112234444444333666 79999999975432 24578999999999999999999999999999999
Q ss_pred eccCCCccCCCCce----EEcCCCc--cHHHHHHHHHHHHhhccccccc
Q 014151 378 LFVEGMEEYNDDFG----IVPWERT--STYKLLTEQSCGLGRISRLNLE 420 (430)
Q Consensus 378 ~~~~~~~~~~dg~~----i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 420 (430)
+.|+ .+|.+||+ +++.|-. +..++.|+++..++.+-..+..
T Consensus 439 llDn--fEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~~~i~~~~~ 485 (504)
T PLN02814 439 MIDL--YELLGGYTTSFGMYYVNFSDPGRKRSPKLSASWYTGFLNGTID 485 (504)
T ss_pred chhh--hchhccccCccceEEECCCCCCcceeeecHHHHHHHHHhcCCC
Confidence 9998 78877765 4443312 2358888888888877554433
No 12
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=99.85 E-value=8.8e-20 Score=188.49 Aligned_cols=307 Identities=13% Similarity=0.138 Sum_probs=203.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccC--CCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcch
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQIS--PGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQ 152 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~--pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~ 152 (430)
...++++|++.|+++|+|+.|+ +. +|++++|. .+.+|+++++.++++|+++.++||.++++|++ |+
T Consensus 67 ~Yhry~EDI~Lm~elG~~~yRf---SI-sWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H-~d------- 134 (477)
T PRK15014 67 FYGHYKEDIKLFAEMGFKCFRT---SI-AWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSH-FE------- 134 (477)
T ss_pred cccccHHHHHHHHHcCCCEEEe---cc-cceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeC-CC-------
Confidence 3568999999999999999998 32 59999886 45689999999999999999999999999986 53
Q ss_pred hhhhhhhh-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCC-----C-------
Q 014151 153 YVNWAWEE-GIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCM-----S------- 219 (430)
Q Consensus 153 y~~W~~~~-G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~-----~------- 219 (430)
.|.|.... |+ |.++++.+.|.+|.+.+++| |++ .|--|.++|||... .
T Consensus 135 lP~~L~~~yGG---------W~n~~~~~~F~~Ya~~~f~~--------fgd--rVk~WiT~NEp~~~~~~~~~~~gy~~~ 195 (477)
T PRK15014 135 MPLHLVQQYGS---------WTNRKVVDFFVRFAEVVFER--------YKH--KVKYWMTFNEINNQRNWRAPLFGYCCS 195 (477)
T ss_pred CCHHHHHhcCC---------CCChHHHHHHHHHHHHHHHH--------hcC--cCCEEEEecCccccccccccccccccc
Confidence 25676543 43 88999999999999999999 998 48789999999742 1
Q ss_pred C---CCh--H---HHHHH------HHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCcc-----------chhhc--
Q 014151 220 D---PSG--D---TLQDW------IDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPE-----------MWASA-- 272 (430)
Q Consensus 220 ~---~~~--~---~~~~w------~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~-----------~w~~~-- 272 (430)
. +.. . .++.- ..++..++|+..|+..|.+-...... .|.. .+|. .|...
T Consensus 196 g~~~~~~~~~~~~~~~~~h~~llAHa~A~~~~~~~~~~~~IGi~~~~~~~--~P~~--~~~~D~~Aa~~~~~~~~~f~d~ 271 (477)
T PRK15014 196 GVVYTEHENPEETMYQVLHHQFVASALAVKAARRINPEMKVGCMLAMVPL--YPYS--CNPDDVMFAQESMRERYVFTDV 271 (477)
T ss_pred ccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCcee--ccCC--CCHHHHHHHHHHHHhccccccc
Confidence 0 000 0 11111 23455678888887665543322111 1100 0110 01000
Q ss_pred --cC--------------c--chh----hccCCCCcceEEeeecCCCCCCC---------c------ch--hhh-H--HH
Q 014151 273 --LG--------------S--DFI----RNSNNDNIDFASVHIYPDHWFHD---------L------EF--EDD-L--KF 310 (430)
Q Consensus 273 --~g--------------~--df~----~~~~~~~iD~~s~H~Y~~~w~~~---------~------~~--~~~-~--~~ 310 (430)
.| . .+. ..+....+||+++++|....... . +. ... . +.
T Consensus 272 ~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i 351 (477)
T PRK15014 272 QLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPYVKASDWGWQI 351 (477)
T ss_pred ccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEcceeCeeeccCCCCCCCccccccccCCCCcccCCCCCcc
Confidence 00 0 000 00113467999999996432110 0 00 000 0 01
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEecCCCCCC-----CCCChhHHHHHHHHHHHHHHHHHh-cCCCcccceeeeeccCCCc
Q 014151 311 VTKWMLSHIEDGDKELNKPVFFTEYGLSNLI-----KGFEPSLRDKLYKTILDIVYKSAK-RKRSGAGALIWQLFVEGME 384 (430)
Q Consensus 311 ~~~~l~~~~~~a~~~~gkPv~v~EfG~~~~~-----~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~G~~~W~~~~~~~~ 384 (430)
...-|+..+....+.+++||+|+|.|+.... ....+..|..|+++++..+.+++. +|..+.|++.|++.|+ .
T Consensus 352 ~P~Gl~~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~Dn--f 429 (477)
T PRK15014 352 DPVGLRYALCELYERYQKPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDC--V 429 (477)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhh--h
Confidence 1122444444444348899999999998532 113468899999999999999985 8999999999999998 7
Q ss_pred cCCCC-ce----EEcCC--Cc---cHHHHHHHHHHHHhhccccc
Q 014151 385 EYNDD-FG----IVPWE--RT---STYKLLTEQSCGLGRISRLN 418 (430)
Q Consensus 385 ~~~dg-~~----i~~~~--~~---~~~~~~~~~~~~~~~~~~~~ 418 (430)
+|..| |+ +++.| ++ +..++.|+++..++.+-..|
T Consensus 430 Ew~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ii~~n 473 (477)
T PRK15014 430 SFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKEVIASN 473 (477)
T ss_pred cccCCCccCccceEEECCCCCCCcccceecccHHHHHHHHHHhc
Confidence 88877 54 55433 11 23588899998888775443
No 13
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=99.85 E-value=9.7e-20 Score=188.03 Aligned_cols=305 Identities=15% Similarity=0.204 Sum_probs=203.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccC-CCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchh
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQIS-PGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQY 153 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~-pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y 153 (430)
...++++|++.|+++|+|+.|+ +. +|++++|. +|.+|+++++.++++|+.+.++||+++++|++ |+ .
T Consensus 51 ~yhry~eDi~L~~~lG~~~yRf---SI-sWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H-~d-------l 118 (467)
T TIGR01233 51 FYHKYPVDLELAEEYGVNGIRI---SI-AWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHH-FD-------T 118 (467)
T ss_pred hhhhHHHHHHHHHHcCCCEEEE---ec-chhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccC-CC-------C
Confidence 4678999999999999999998 33 59999985 57899999999999999999999999999986 54 2
Q ss_pred hhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCC---------CC--
Q 014151 154 VNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSD---------PS-- 222 (430)
Q Consensus 154 ~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~---------~~-- 222 (430)
|.|....|+ |.++++.+.|.+|.+.+++| |++ |--|.++|||..... +.
T Consensus 119 P~~L~~~GG---------W~n~~~v~~F~~YA~~~f~~--------fgd---Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~ 178 (467)
T TIGR01233 119 PEALHSNGD---------FLNRENIEHFIDYAAFCFEE--------FPE---VNYWTTFNEIGPIGDGQYLVGKFPPGIK 178 (467)
T ss_pred cHHHHHcCC---------CCCHHHHHHHHHHHHHHHHH--------hCC---CCEEEEecchhhhhhccchhcccCCCcc
Confidence 667765553 88999999999999999999 983 778999999986421 10
Q ss_pred h---HHHHHH------HHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCcc-------------chhh---ccCc--
Q 014151 223 G---DTLQDW------IDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPE-------------MWAS---ALGS-- 275 (430)
Q Consensus 223 ~---~~~~~w------~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~-------------~w~~---~~g~-- 275 (430)
. ..++.- ..++..++|+.+|+..|.+-....+.. |.. ..+|. .|.. ..|.
T Consensus 179 ~~~~~~~~a~hn~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~--P~~-~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp 255 (467)
T TIGR01233 179 YDLAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHALPTKY--PYD-PENPADVRAAELEDIIHNKFILDATYLGHYS 255 (467)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceeE--ECC-CCCHHHHHHHHHHHHHhhhcccchhhCCCCC
Confidence 0 111221 235566788888876665433221111 100 00110 1100 0010
Q ss_pred ------------------chh----hccC--CCCcceEEeeecCCCCCCC-----------c-----------ch-----
Q 014151 276 ------------------DFI----RNSN--NDNIDFASVHIYPDHWFHD-----------L-----------EF----- 304 (430)
Q Consensus 276 ------------------df~----~~~~--~~~iD~~s~H~Y~~~w~~~-----------~-----------~~----- 304 (430)
.+. ..+. ...+||+++++|....... . ..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (467)
T TIGR01233 256 DKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAFDGETEIIHNGKGEKGSSKYQIKGVGRRVA 335 (467)
T ss_pred HHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeeccCCCccccccCCccccCcccccCCCcccccC
Confidence 000 0011 2356999999996432110 0 00
Q ss_pred ----h-hhH--HHHHHHHHHHHHhhhhcCCC--cEEEEecCCCCCC----CCCChhHHHHHHHHHHHHHHHHHhcCCCcc
Q 014151 305 ----E-DDL--KFVTKWMLSHIEDGDKELNK--PVFFTEYGLSNLI----KGFEPSLRDKLYKTILDIVYKSAKRKRSGA 371 (430)
Q Consensus 305 ----~-~~~--~~~~~~l~~~~~~a~~~~gk--Pv~v~EfG~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 371 (430)
+ ... +....-|+..+....+.+++ ||+|+|.|+.... ....+..|..|+++++..+.+++.+|..+.
T Consensus 336 ~~~~~~t~~gw~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~ 415 (467)
T TIGR01233 336 PDYVPRTDWDWIIYPEGLYDQIMRVKNDYPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANVK 415 (467)
T ss_pred CCCCCcCCCCCeeChHHHHHHHHHHHHHcCCCCCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 0 000 00122244444444444776 7999999998532 113468999999999999999999999999
Q ss_pred cceeeeeccCCCccCCCCce----EEcCCCccHHHHHHHHHHHHhhccc
Q 014151 372 GALIWQLFVEGMEEYNDDFG----IVPWERTSTYKLLTEQSCGLGRISR 416 (430)
Q Consensus 372 G~~~W~~~~~~~~~~~dg~~----i~~~~~~~~~~~~~~~~~~~~~~~~ 416 (430)
|+++|++.|+ .+|..||+ +++-|-.+..+..|+++..++.+-.
T Consensus 416 GY~~WSl~Dn--~Ew~~Gy~~RfGLv~VD~~t~~R~~K~S~~wy~~ii~ 462 (467)
T TIGR01233 416 GYFIWSLMDV--FSWSNGYEKRYGLFYVDFDTQERYPKKSAHWYKKLAE 462 (467)
T ss_pred EEeeccchhh--hchhccccCccceEEECCCCCccccccHHHHHHHHHH
Confidence 9999999998 78877765 5544423335778888887776643
No 14
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=99.85 E-value=8e-20 Score=189.03 Aligned_cols=306 Identities=15% Similarity=0.210 Sum_probs=201.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccC-CCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchh
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQIS-PGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQY 153 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~-pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y 153 (430)
...++++|++.|+++|+|+.|+ +. +|++++|. .|.+|+++++.++++|+.+.++||..+++|++ |+ .
T Consensus 52 ~Y~ry~eDi~L~~~lG~~~yRf---SI-sWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H-~d-------l 119 (469)
T PRK13511 52 FYHRYPEDLKLAEEFGVNGIRI---SI-AWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHH-FD-------T 119 (469)
T ss_pred hhhhhHHHHHHHHHhCCCEEEe---ec-cHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecC-CC-------C
Confidence 4678999999999999999998 33 59999985 46799999999999999999999999999986 64 2
Q ss_pred hhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCC---------C--C
Q 014151 154 VNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSD---------P--S 222 (430)
Q Consensus 154 ~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~---------~--~ 222 (430)
|.|....|+ |.++++.+.|.+|.+.+++| |+| |--|.++|||..... + .
T Consensus 120 P~~L~~~GG---------W~n~~~v~~F~~YA~~~~~~--------fgd---Vk~W~T~NEP~~~~~~gy~~G~~~Pg~~ 179 (469)
T PRK13511 120 PEALHSNGD---------WLNRENIDHFVRYAEFCFEE--------FPE---VKYWTTFNEIGPIGDGQYLVGKFPPGIK 179 (469)
T ss_pred cHHHHHcCC---------CCCHHHHHHHHHHHHHHHHH--------hCC---CCEEEEccchhhhhhcchhhcccCCCCC
Confidence 677765443 88999999999999999999 988 778999999985431 1 1
Q ss_pred h---HHHHHH------HHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCcc-------------chhh---ccCc--
Q 014151 223 G---DTLQDW------IDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPE-------------MWAS---ALGS-- 275 (430)
Q Consensus 223 ~---~~~~~w------~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~-------------~w~~---~~g~-- 275 (430)
. ..++.- ..+..+++|+..|+-.|.+-....+.. |.. ..+|. .|.. ..|.
T Consensus 180 ~~~~~~~~~~hn~llAHa~A~~~~~~~~~~g~IGi~~~~~~~~--P~~-~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp 256 (469)
T PRK13511 180 YDLAKVFQSHHNMMVAHARAVKLFKDKGYKGEIGVVHALPTKY--PID-PDNPEDVRAAELEDIIHNKFILDATYLGYYS 256 (469)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceEe--eCC-CCCHHHHHHHHHHHHHhhhcccchhhCCCCC
Confidence 0 111211 234556788877765554432221111 100 00111 1100 0010
Q ss_pred ------------------chh----hccCC--CCcceEEeeecCCCCCCC---c--------------------------
Q 014151 276 ------------------DFI----RNSNN--DNIDFASVHIYPDHWFHD---L-------------------------- 302 (430)
Q Consensus 276 ------------------df~----~~~~~--~~iD~~s~H~Y~~~w~~~---~-------------------------- 302 (430)
.|. ..+.. ..+||+++++|....... .
T Consensus 257 ~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (469)
T PRK13511 257 EETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMRAYDGETEIIHNGTGEKGSSKYQLKGVGERVK 336 (469)
T ss_pred HHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceeecCCCccccccCCCCccccccccccCcccccc
Confidence 010 00111 247999999996532110 0
Q ss_pred --chh-hhHH--HHHHHHHHHHHhhhhcCCC--cEEEEecCCCCCCC-----CCChhHHHHHHHHHHHHHHHHHhcCCCc
Q 014151 303 --EFE-DDLK--FVTKWMLSHIEDGDKELNK--PVFFTEYGLSNLIK-----GFEPSLRDKLYKTILDIVYKSAKRKRSG 370 (430)
Q Consensus 303 --~~~-~~~~--~~~~~l~~~~~~a~~~~gk--Pv~v~EfG~~~~~~-----~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 370 (430)
..+ .... ....-|...+....+.+++ ||+|+|.|+..... ...+..|..|+++++..+.+++.+|..+
T Consensus 337 ~~~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v 416 (469)
T PRK13511 337 PPDVPTTDWDWIIYPQGLYDQLMRIKKDYPNYKKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANV 416 (469)
T ss_pred CCCCCcCCCCCeECcHHHHHHHHHHHHHcCCCCCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 000 0000 0011133334434333665 79999999974321 1346789999999999999999999999
Q ss_pred ccceeeeeccCCCccCCCCce----EEcCCCccHHHHHHHHHHHHhhcccc
Q 014151 371 AGALIWQLFVEGMEEYNDDFG----IVPWERTSTYKLLTEQSCGLGRISRL 417 (430)
Q Consensus 371 ~G~~~W~~~~~~~~~~~dg~~----i~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (430)
.|+++|++.|+ .+|.+||+ +++.|-.+..+..|+++..++.+-..
T Consensus 417 ~GY~~WSl~Dn--fEW~~Gy~~RfGl~~VD~~~~~R~pK~S~~wy~~~i~~ 465 (469)
T PRK13511 417 KGYFIWSLMDV--FSWSNGYEKRYGLFYVDFETQERYPKKSAYWYKKLAET 465 (469)
T ss_pred EEEeecccccc--cchhcCccCccceEEECCCcCccccccHHHHHHHHHHh
Confidence 99999999998 88987765 44444233357788888887766443
No 15
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.84 E-value=2.4e-19 Score=200.20 Aligned_cols=244 Identities=17% Similarity=0.163 Sum_probs=159.7
Q ss_pred CCCc--EEEeCCeEEECCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCC
Q 014151 38 EMGF--VTRNGTHFMLDGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFD 115 (430)
Q Consensus 38 ~~gf--v~~~g~~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~d 115 (430)
+.|| |++++++|++||+|++++|+|.|..........+.+.++++|+.||++|+|+||+.. ++ +.
T Consensus 330 ~~GfR~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sH-----yP---~~----- 396 (1027)
T PRK09525 330 DVGFRKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSH-----YP---NH----- 396 (1027)
T ss_pred eEEEEEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecC-----CC---CC-----
Confidence 5677 666789999999999999999874332222346889999999999999999999943 22 11
Q ss_pred hHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCc
Q 014151 116 ERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTI 195 (430)
Q Consensus 116 e~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~ 195 (430)
.+++++|+++||+|+-...- + .. |+. + ......+|+..+.+.+.++.++.|
T Consensus 397 -------p~fydlcDe~GilV~dE~~~-e-~h-g~~--~-------------~~~~~~dp~~~~~~~~~~~~mV~R---- 447 (1027)
T PRK09525 397 -------PLWYELCDRYGLYVVDEANI-E-TH-GMV--P-------------MNRLSDDPRWLPAMSERVTRMVQR---- 447 (1027)
T ss_pred -------HHHHHHHHHcCCEEEEecCc-c-cc-CCc--c-------------ccCCCCCHHHHHHHHHHHHHHHHh----
Confidence 25689999999999765421 1 00 110 0 011245788899999999999999
Q ss_pred ccccccCCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCccchhhccCc
Q 014151 196 TGVEYRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPEMWASALGS 275 (430)
Q Consensus 196 tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~w~~~~g~ 275 (430)
+||||+|++|.++||+.... . ..+|...+|++||.|+|+..+.+.
T Consensus 448 ----drNHPSIi~WSlgNE~~~g~-----~----~~~l~~~~k~~DptRpV~y~~~~~---------------------- 492 (1027)
T PRK09525 448 ----DRNHPSIIIWSLGNESGHGA-----N----HDALYRWIKSNDPSRPVQYEGGGA---------------------- 492 (1027)
T ss_pred ----CCCCCEEEEEeCccCCCcCh-----h----HHHHHHHHHhhCCCCcEEECCCCC----------------------
Confidence 99999999999999986532 1 367888999999999998742110
Q ss_pred chhhccCCCCcceEEeeecCCC-CCCCcchhhhHHHHHHHHHHHHHhhhhcCCCcEEEEecCCCCCCCCCChhHHHHHHH
Q 014151 276 DFIRNSNNDNIDFASVHIYPDH-WFHDLEFEDDLKFVTKWMLSHIEDGDKELNKPVFFTEYGLSNLIKGFEPSLRDKLYK 354 (430)
Q Consensus 276 df~~~~~~~~iD~~s~H~Y~~~-w~~~~~~~~~~~~~~~~l~~~~~~a~~~~gkPv~v~EfG~~~~~~~~~~~~r~~~~~ 354 (430)
.....|+++.. |+.. +... ..... ...+.+..... ..+||++++|||....++ ... ++
T Consensus 493 ------~~~~~Dv~~~m-y~~~~~~~~--~~~~~---~~~~~~~~~~~--~~~kP~i~cEY~Hamgn~---~g~----l~ 551 (1027)
T PRK09525 493 ------DTAATDIICPM-YARVDEDQP--FPAVP---KWSIKKWISLP--GETRPLILCEYAHAMGNS---LGG----FA 551 (1027)
T ss_pred ------CCCccccccCC-CCCcccccc--ccccc---hHHHHHHHhcC--CCCCCEEEEechhcccCc---Ccc----HH
Confidence 01235665543 3321 1110 00000 00122221111 147999999999765542 112 23
Q ss_pred HHHHHHHHHHhcCCCcccceeeeeccCCC
Q 014151 355 TILDIVYKSAKRKRSGAGALIWQLFVEGM 383 (430)
Q Consensus 355 ~~~~~~~~~~~~~~~~~G~~~W~~~~~~~ 383 (430)
...+.+. +.+...|.++|.|.|++.
T Consensus 552 ~yw~~~~----~~~~~~GgfIW~w~Dqg~ 576 (1027)
T PRK09525 552 KYWQAFR----QYPRLQGGFIWDWVDQGL 576 (1027)
T ss_pred HHHHHHh----cCCCeeEEeeEeccCcce
Confidence 3333333 245799999999999865
No 16
>PLN02849 beta-glucosidase
Probab=99.84 E-value=1.7e-19 Score=187.20 Aligned_cols=303 Identities=16% Similarity=0.195 Sum_probs=200.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCC-CCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchh
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISP-GQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQY 153 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~p-g~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y 153 (430)
...++++|++.||++|+|+.|+ +. +|++++|.. |.+|+++++.++++|+++.++||..+++|++ |+ .
T Consensus 77 ~YhrY~eDI~Lm~~lG~~aYRf---SI-sWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H-~d-------l 144 (503)
T PLN02849 77 GYHKYKEDVKLMVETGLDAFRF---SI-SWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFH-YD-------H 144 (503)
T ss_pred HHHhHHHHHHHHHHcCCCeEEE---ec-cHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecC-CC-------C
Confidence 4679999999999999999998 33 599999853 6799999999999999999999999999986 64 2
Q ss_pred hhhhhhh-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCC---------C--
Q 014151 154 VNWAWEE-GIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSD---------P-- 221 (430)
Q Consensus 154 ~~W~~~~-G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~---------~-- 221 (430)
|.|.... |+ |.+++..+.|.+|.+.+++| |+| .|--|.+.|||.+... +
T Consensus 145 P~~L~~~yGG---------W~nr~~v~~F~~YA~~~f~~--------fgD--rVk~WiT~NEP~~~~~~gy~~G~~~Pg~ 205 (503)
T PLN02849 145 PQYLEDDYGG---------WINRRIIKDFTAYADVCFRE--------FGN--HVKFWTTINEANIFTIGGYNDGITPPGR 205 (503)
T ss_pred cHHHHHhcCC---------cCCchHHHHHHHHHHHHHHH--------hcC--cCCEEEEecchhhhhhchhhhccCCCCc
Confidence 6677653 53 88999999999999999999 998 5888999999985321 0
Q ss_pred -Ch------------HHHHHH------HHHHHHHHHhc-C--CCCEEEEccCCccCCCCCCCcccCcc------------
Q 014151 222 -SG------------DTLQDW------IDEMSAFVKSI-D--KKHLVTVGLEGFYGPKSPKRLTVNPE------------ 267 (430)
Q Consensus 222 -~~------------~~~~~w------~~~~~~~Ir~~-d--p~~lV~~G~~g~~~~~~~~~~~~np~------------ 267 (430)
.. ..++.- ..++..++|+. . |+-.|.+-....+. .|.. .+|.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~~~--~P~~--~~~~D~~AA~~~~~~~ 281 (503)
T PLN02849 206 CSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFALGF--TPST--SSKDDDIATQRAKDFY 281 (503)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECcee--ecCC--CCHHHHHHHHHHHHHh
Confidence 00 011111 23455567765 2 55555443222111 1110 0111
Q ss_pred -chhh---ccCcchh------------------hccCCCCcceEEeeecCCCCCCC---cc----hhh-----------h
Q 014151 268 -MWAS---ALGSDFI------------------RNSNNDNIDFASVHIYPDHWFHD---LE----FED-----------D 307 (430)
Q Consensus 268 -~w~~---~~g~df~------------------~~~~~~~iD~~s~H~Y~~~w~~~---~~----~~~-----------~ 307 (430)
.|.. ..| ++. ...-...+||+++++|....... .. .+. .
T Consensus 282 ~~~f~dp~~~G-~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (503)
T PLN02849 282 LGWMLEPLIFG-DYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTNIKIKPSLSGNPDFYSDMGVSLGKF 360 (503)
T ss_pred hhhhhHHHhCC-CccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhcccCCCCCCCCCCCccccccCCCCCcc
Confidence 0100 001 000 00012357999999996432110 00 000 0
Q ss_pred --H--HHHHHHHHHHHHhhhhcCCC-cEEEEecCCCCCCC---CCChhHHHHHHHHHHHHHHHHHhcCCCcccceeeeec
Q 014151 308 --L--KFVTKWMLSHIEDGDKELNK-PVFFTEYGLSNLIK---GFEPSLRDKLYKTILDIVYKSAKRKRSGAGALIWQLF 379 (430)
Q Consensus 308 --~--~~~~~~l~~~~~~a~~~~gk-Pv~v~EfG~~~~~~---~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~ 379 (430)
. +....-|+..+....+.+++ ||+|+|.|+..... ...+..|..|+++++..+.+++.+|..+.|++.|++.
T Consensus 361 ~~~gw~i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~ 440 (503)
T PLN02849 361 SAFEYAVAPWAMESVLEYIKQSYGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFM 440 (503)
T ss_pred CCCCCeEChHHHHHHHHHHHHhcCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccch
Confidence 0 00111234444433334777 79999999975321 1347899999999999999999999999999999999
Q ss_pred cCCCccCCCCce----EEcCCCc--cHHHHHHHHHHHHhhcc
Q 014151 380 VEGMEEYNDDFG----IVPWERT--STYKLLTEQSCGLGRIS 415 (430)
Q Consensus 380 ~~~~~~~~dg~~----i~~~~~~--~~~~~~~~~~~~~~~~~ 415 (430)
|+ .+|..||+ +++.|-. +..+..|+++..++.+-
T Consensus 441 Dn--fEW~~Gy~~RfGLi~VD~~~~~~~R~pK~S~~wy~~ii 480 (503)
T PLN02849 441 DL--YELLKGYEFSFGLYSVNFSDPHRKRSPKLSAHWYSAFL 480 (503)
T ss_pred hh--hchhccccCccceEEECCCCCCcceecccHHHHHHHHH
Confidence 98 78877765 4443312 23588888888888773
No 17
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=99.83 E-value=3.6e-19 Score=183.62 Aligned_cols=306 Identities=16% Similarity=0.175 Sum_probs=202.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccC--CCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcch
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQIS--PGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQ 152 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~--pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~ 152 (430)
...++++|++.|+++|+|+.|+ +. +|++++|. ++.+|+++++.+|++|+++.++||.++++|++ |+
T Consensus 69 ~Yhry~eDi~l~~~lG~~~yR~---si-~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H-~~------- 136 (474)
T PRK09852 69 FYHRYKEDIALMAEMGFKVFRT---SI-AWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCH-FD------- 136 (474)
T ss_pred hhhhhHHHHHHHHHcCCCeEEe---ec-eeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeC-CC-------
Confidence 3678999999999999999998 32 58888886 45689999999999999999999999999986 53
Q ss_pred hhhhhhhh-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCC-----------
Q 014151 153 YVNWAWEE-GIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSD----------- 220 (430)
Q Consensus 153 y~~W~~~~-G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~----------- 220 (430)
.|.|.... |+ |.++++.+.|.+|++.+++| |++ .|--|.++|||+....
T Consensus 137 ~P~~l~~~~GG---------W~~~~~~~~F~~ya~~~~~~--------fgd--~Vk~WiTfNEPn~~~~~gy~~~g~~~~ 197 (474)
T PRK09852 137 VPMHLVTEYGS---------WRNRKMVEFFSRYARTCFEA--------FDG--LVKYWLTFNEINIMLHSPFSGAGLVFE 197 (474)
T ss_pred CCHHHHHhcCC---------CCCHHHHHHHHHHHHHHHHH--------hcC--cCCeEEeecchhhhhccCccccCcccC
Confidence 25666542 43 88999999999999999999 998 5778999999984310
Q ss_pred C--Ch-H-HHHHH------HHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCcc------------chhh---ccC-
Q 014151 221 P--SG-D-TLQDW------IDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPE------------MWAS---ALG- 274 (430)
Q Consensus 221 ~--~~-~-~~~~w------~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~------------~w~~---~~g- 274 (430)
+ .. . .++.- ..++..++|+..|+-.|.+-....+. .|.. .+|. .|.. ..|
T Consensus 198 p~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~IGi~~~~~~~--~P~~--~~~~d~~AA~~~~~~~~~~~d~~~~G~ 273 (474)
T PRK09852 198 EGENQDQVKYQAAHHELVASALATKIAHEVNPQNQVGCMLAGGNF--YPYS--CKPEDVWAALEKDRENLFFIDVQARGA 273 (474)
T ss_pred CCCCchHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCee--eeCC--CCHHHHHHHHHHHHHhhhhcchhhCCC
Confidence 1 00 0 11111 23455667888887555443322111 1100 0111 0100 001
Q ss_pred -------------c--chh---hccCCCCcceEEeeecCCCCCCCc---------ch------h---hh-H--HHHHHHH
Q 014151 275 -------------S--DFI---RNSNNDNIDFASVHIYPDHWFHDL---------EF------E---DD-L--KFVTKWM 315 (430)
Q Consensus 275 -------------~--df~---~~~~~~~iD~~s~H~Y~~~w~~~~---------~~------~---~~-~--~~~~~~l 315 (430)
. +|. ...-...+||+++++|........ .. + .. . +....-|
T Consensus 274 YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl 353 (474)
T PRK09852 274 YPAYSARVFREKGVTIDKAPGDDEILKNTVDFVSFSYYASRCASAEMNANNSSAANVVKSLRNPYLQVSDWGWGIDPLGL 353 (474)
T ss_pred ccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEEEccccCeecccCCCCCCCCcCCceecccCCCcccCCCCCeeChHHH
Confidence 0 000 000124579999999965322100 00 0 00 0 0112224
Q ss_pred HHHHHhhhhcCCCcEEEEecCCCCCCC-----CCChhHHHHHHHHHHHHHHHHHhcCCCcccceeeeeccCCCccCCCC-
Q 014151 316 LSHIEDGDKELNKPVFFTEYGLSNLIK-----GFEPSLRDKLYKTILDIVYKSAKRKRSGAGALIWQLFVEGMEEYNDD- 389 (430)
Q Consensus 316 ~~~~~~a~~~~gkPv~v~EfG~~~~~~-----~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~~~~~~~dg- 389 (430)
+..+....+.+++||+|+|.|+..... ...+..|..|+++++.++.+++.+|..+.|++.|++.|+ .+|..|
T Consensus 354 ~~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn--~Ew~~G~ 431 (474)
T PRK09852 354 RITMNMMYDRYQKPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDL--VSASTGE 431 (474)
T ss_pred HHHHHHHHHhcCCCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccccc--ccccCCC
Confidence 444444433488999999999985421 134778999999999999999999999999999999998 788777
Q ss_pred ----ceEEcCCCc-----cHHHHHHHHHHHHhhcccc
Q 014151 390 ----FGIVPWERT-----STYKLLTEQSCGLGRISRL 417 (430)
Q Consensus 390 ----~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~ 417 (430)
|++++.|-. +..++.|+++..++.+-..
T Consensus 432 y~~RfGLv~VD~~~~~~~t~~R~pK~S~~wy~~ii~~ 468 (474)
T PRK09852 432 MSKRYGFVYVDRDDAGNGTLTRTRKKSFWWYKKVIAS 468 (474)
T ss_pred ccceeeeEEECCCCCCCcccceecccHHHHHHHHHHh
Confidence 455554422 2358889998888877443
No 18
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.81 E-value=1e-18 Score=175.55 Aligned_cols=303 Identities=19% Similarity=0.267 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCC--CCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchh
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPG--QFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQY 153 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg--~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y 153 (430)
..+.++|++.|++||+|+.|+ +. +|+++.|.++ ..|+++++.+|++++.|.++||..+++|++ |+ +
T Consensus 58 YhrYkeDi~L~~emG~~~~R~---SI-~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~H-fd----~--- 125 (460)
T COG2723 58 YHRYKEDIALAKEMGLNAFRT---SI-EWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYH-FD----L--- 125 (460)
T ss_pred hhhhHHHHHHHHHcCCCEEEe---ee-eEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecc-cC----C---
Confidence 578999999999999999999 33 5988888654 599999999999999999999999999986 54 2
Q ss_pred hhhhhhh-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCCC-----------
Q 014151 154 VNWAWEE-GIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSDP----------- 221 (430)
Q Consensus 154 ~~W~~~~-G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~----------- 221 (430)
|.|.... |+ |.|+++.+.|.+|.+.+++| |+| .|--|-++|||++....
T Consensus 126 P~~L~~~ygG---------W~nR~~i~~F~~ya~~vf~~--------f~d--kVk~W~TFNE~n~~~~~~y~~~~~~p~~ 186 (460)
T COG2723 126 PLWLQKPYGG---------WENRETVDAFARYAATVFER--------FGD--KVKYWFTFNEPNVVVELGYLYGGHPPGI 186 (460)
T ss_pred cHHHhhccCC---------ccCHHHHHHHHHHHHHHHHH--------hcC--cceEEEEecchhhhhcccccccccCCCc
Confidence 5565543 22 88999999999999999999 988 68899999999975321
Q ss_pred -C-hHHHHHH------HHHHHHHHHhcCCC-C-EEEEccCCccCCCCCCCcccCcc---------chhh-------ccCc
Q 014151 222 -S-GDTLQDW------IDEMSAFVKSIDKK-H-LVTVGLEGFYGPKSPKRLTVNPE---------MWAS-------ALGS 275 (430)
Q Consensus 222 -~-~~~~~~w------~~~~~~~Ir~~dp~-~-lV~~G~~g~~~~~~~~~~~~np~---------~w~~-------~~g~ 275 (430)
. ....+.. .....+.+|++.|+ . -++......| |.. -+|. .|.+ ..|.
T Consensus 187 ~~~~~~~qa~hh~~lA~A~avk~~~~~~~~~kIG~~~~~~p~Y----P~s--~~p~dv~aA~~~~~~~n~~FlD~~~~G~ 260 (460)
T COG2723 187 VDPKAAYQVAHHMLLAHALAVKAIKKINPKGKVGIILNLTPAY----PLS--DKPEDVKAAENADRFHNRFFLDAQVKGE 260 (460)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhCCcCceEEEeccCcCC----CCC--CCHHHHHHHHHHHHHhhhhhcchhhcCc
Confidence 1 1111222 12445667888887 3 2333221111 110 0121 0100 0010
Q ss_pred ---------------------chhhccCCCCcceEEeeecCC-CC-----------CCCcch--------hh-hH--HHH
Q 014151 276 ---------------------DFIRNSNNDNIDFASVHIYPD-HW-----------FHDLEF--------ED-DL--KFV 311 (430)
Q Consensus 276 ---------------------df~~~~~~~~iD~~s~H~Y~~-~w-----------~~~~~~--------~~-~~--~~~ 311 (430)
|. ..+....+||+++++|.+ .. .....+ +. .. +..
T Consensus 261 yp~~~~~~~~~~~~~~~~~~~Dl-~~lk~~~~DfiG~NYY~~s~v~~~~~~~~~~~~~~~~~~~~~~p~~~~sdwGWeI~ 339 (460)
T COG2723 261 YPEYLEKELEENGILPEIEDGDL-EILKENTVDFIGLNYYTPSRVKAAEPRYVSGYGPGGFFTSVPNPGLEVSDWGWEIY 339 (460)
T ss_pred CCHHHHHHHHhcCCCcccCcchH-HHHhcCCCCeEEEeeeeeeeEeeccCCcCCcccccccccccCCCCCcccCCCceeC
Confidence 00 112234589999999972 11 100000 00 00 001
Q ss_pred HHHHHHHHHhhhhcCCCcEEEEecCCCCCC----CCCChhHHHHHHHHHHHHHHHHHhcCCCcccceeeeeccCCCccCC
Q 014151 312 TKWMLSHIEDGDKELNKPVFFTEYGLSNLI----KGFEPSLRDKLYKTILDIVYKSAKRKRSGAGALIWQLFVEGMEEYN 387 (430)
Q Consensus 312 ~~~l~~~~~~a~~~~gkPv~v~EfG~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~~~~~~~ 387 (430)
..-|...+......+++|++|+|.|..... .+..+..|.+|+++++..+.+++..|..+.|++.|++.|. .+|.
T Consensus 340 P~GL~~~l~~~~~rY~~p~fItENG~G~~d~~~~~~i~DdyRI~Yl~~Hl~~v~~AI~dGv~v~GY~~Ws~iD~--~sw~ 417 (460)
T COG2723 340 PKGLYDILEKLYERYGIPLFITENGLGVKDEVDFDGINDDYRIDYLKEHLKAVKKAIEDGVDVRGYFAWSLIDN--YSWA 417 (460)
T ss_pred hHHHHHHHHHHHHHhCCCeEEecCCCCcccccccCCcCchHHHHHHHHHHHHHHHHHHcCCCcccceecccccc--cchh
Confidence 122333444444348899999999976543 1235689999999999999999999999999999999997 6787
Q ss_pred CCce----EEcCCCccH--HHHHHHHHHHHhhcccccc
Q 014151 388 DDFG----IVPWERTST--YKLLTEQSCGLGRISRLNL 419 (430)
Q Consensus 388 dg~~----i~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 419 (430)
.||. +++.| ..+ .+..+++...+..+..+|-
T Consensus 418 ~gy~kRYGli~VD-~~~~~~R~~KkS~~WyK~vi~sng 454 (460)
T COG2723 418 NGYKKRYGLVYVD-YDTDLERTPKKSFYWYKEVIESNG 454 (460)
T ss_pred hccccccccEEEc-ccccceeeecCceeeeHHHHhcCC
Confidence 7765 33332 333 4677777777776655553
No 19
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=99.81 E-value=5.6e-21 Score=197.63 Aligned_cols=303 Identities=16% Similarity=0.244 Sum_probs=193.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccC--CCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcch
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQIS--PGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQ 152 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~--pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~ 152 (430)
...++++|++.|+++|+|+.|+ +. +|++++|. .|.+|+++++.++++|+.+.++||+++++|++ |+
T Consensus 56 ~y~~y~eDi~l~~~lg~~~yRf---si-~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H-~~------- 123 (455)
T PF00232_consen 56 HYHRYKEDIALMKELGVNAYRF---SI-SWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYH-FD------- 123 (455)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEE---E---HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEES-S--------
T ss_pred chhhhhHHHHHHHhhccceeee---ec-chhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeee-cc-------
Confidence 3578999999999999999998 32 59999998 59999999999999999999999999999986 53
Q ss_pred hhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCC---------C--
Q 014151 153 YVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSD---------P-- 221 (430)
Q Consensus 153 y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~---------~-- 221 (430)
.|.|....|+ |.+++..+.|.+|.+.+++| |++ .|--|.++|||..... +
T Consensus 124 ~P~~l~~~gg---------w~~~~~~~~F~~Ya~~~~~~--------~gd--~V~~w~T~NEp~~~~~~~y~~g~~~p~~ 184 (455)
T PF00232_consen 124 LPLWLEDYGG---------WLNRETVDWFARYAEFVFER--------FGD--RVKYWITFNEPNVFALLGYLYGGFPPGR 184 (455)
T ss_dssp -BHHHHHHTG---------GGSTHHHHHHHHHHHHHHHH--------HTT--TBSEEEEEETHHHHHHHHHTSSSSTTCS
T ss_pred cccceeeccc---------ccCHHHHHHHHHHHHHHHHH--------hCC--CcceEEeccccceeeccccccccccccc
Confidence 3677765554 88999999999999999999 998 5888999999985310 1
Q ss_pred -Ch-H------HHHHHHHHHHHHHHhcCCCCEEEEccCCccCCC-CCCCcccCcc-------------chhh---ccCc-
Q 014151 222 -SG-D------TLQDWIDEMSAFVKSIDKKHLVTVGLEGFYGPK-SPKRLTVNPE-------------MWAS---ALGS- 275 (430)
Q Consensus 222 -~~-~------~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~-~~~~~~~np~-------------~w~~---~~g~- 275 (430)
+. . .+..-..++.+.+|+..|+..|.+-....+..+ ++. ++. .|.. ..|.
T Consensus 185 ~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~----~~d~~~Aa~~~~~~~n~~f~dpi~~G~Y 260 (455)
T PF00232_consen 185 DSLKAFYQAAHNLLLAHAKAVKAIKEKYPDGKIGIALNFSPFYPLSPS----PEDDVAAAERADEFHNGWFLDPIFKGDY 260 (455)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHTCTSEEEEEEEEEEEEESSSS----HHHHHHHHHHHHHHHTHHHHHHHHHSSS
T ss_pred cccchhhHHHhhHHHHHHHHHHHHhhcccceEEeccccccccCCCCcc----chhhHHHHHHHHHHhhcccccCchhhcC
Confidence 11 1 112223466678899889888765432111100 000 000 0100 0110
Q ss_pred ---------------chh---hccCCCCcceEEeeecCCCCC---C--Ccch-----------------hhhHHH--HHH
Q 014151 276 ---------------DFI---RNSNNDNIDFASVHIYPDHWF---H--DLEF-----------------EDDLKF--VTK 313 (430)
Q Consensus 276 ---------------df~---~~~~~~~iD~~s~H~Y~~~w~---~--~~~~-----------------~~~~~~--~~~ 313 (430)
.|. ...-...+||+++++|..... + .... .....| ...
T Consensus 261 P~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~ 340 (455)
T PF00232_consen 261 PEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPE 340 (455)
T ss_dssp EHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETH
T ss_pred ChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCccccccccccCCccccccccccccccccCcccccc
Confidence 000 001135799999999964211 0 0000 000000 012
Q ss_pred HHHHHHHhhhhcCC-CcEEEEecCCCCCCC----CCChhHHHHHHHHHHHHHHHHHhcCCCcccceeeeeccCCCccCCC
Q 014151 314 WMLSHIEDGDKELN-KPVFFTEYGLSNLIK----GFEPSLRDKLYKTILDIVYKSAKRKRSGAGALIWQLFVEGMEEYND 388 (430)
Q Consensus 314 ~l~~~~~~a~~~~g-kPv~v~EfG~~~~~~----~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~~~~~~~d 388 (430)
-|+..++...+.++ +||+|+|.|+..... ...+..|..|+++.+..+.++..++..+.|+++|++.|+ .+|.+
T Consensus 341 Gl~~~L~~l~~~Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn--~Ew~~ 418 (455)
T PF00232_consen 341 GLRDVLRYLKDRYGNPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLDN--FEWAE 418 (455)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEETSB-----BGGG
T ss_pred hHhhhhhhhccccCCCcEEEecccccccccccccCcCcHHHHHHHHHHHHHHHhhhccCCCeeeEeeeccccc--ccccc
Confidence 23334444332355 999999999987642 123689999999999999999999999999999999998 78877
Q ss_pred Cce----EEcCC-CccHHHHHHHHHHHHhhc
Q 014151 389 DFG----IVPWE-RTSTYKLLTEQSCGLGRI 414 (430)
Q Consensus 389 g~~----i~~~~-~~~~~~~~~~~~~~~~~~ 414 (430)
||+ +++.| .++..+..|.+++-++.+
T Consensus 419 Gy~~rfGl~~VD~~~~~~R~pK~S~~~y~~~ 449 (455)
T PF00232_consen 419 GYKKRFGLVYVDFFDTLKRTPKKSAYWYKDF 449 (455)
T ss_dssp GGGSE--SEEEETTTTTEEEEBHHHHHHHHH
T ss_pred CccCccCceEEcCCCCcCeeeccHHHHHHHH
Confidence 776 33333 343446677777766655
No 20
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.64 E-value=1.9e-14 Score=141.42 Aligned_cols=242 Identities=17% Similarity=0.234 Sum_probs=142.2
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCccccC-CCCCChHHHHHHHHHHHHHHHcCCEEEEecc--CCcccCCCcchhhh
Q 014151 79 VGAMLQAGAKMGLTVCRTWAFNDGGYNSLQIS-PGQFDERVFKALDHVIVEARKNGVRLLLSLV--NNLQAYGGKTQYVN 155 (430)
Q Consensus 79 ~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~-pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~--~~w~~~gg~~~y~~ 155 (430)
.++.|+.+|+.|+|.||+=++.+ |. .|..| ++..-++...|+++||+|+|+|| +.|.+.|.+..-..
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~-------P~~~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~a 95 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVN-------PYDGGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAA 95 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS--------TTTTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TT
T ss_pred CCCHHHHHHhcCCCeEEEEeccC-------CcccccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCcc
Confidence 46789999999999999855433 22 24444 66777888889999999999998 34666554322222
Q ss_pred hhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCC-ceeEEeecCCCCCCCC------CChHHHHH
Q 014151 156 WAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDP-TIFAWELINEPRCMSD------PSGDTLQD 228 (430)
Q Consensus 156 W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p-~I~~wel~NEp~~~~~------~~~~~~~~ 228 (430)
|.. .+-.+..++..+|.+.+++. +++.- .+-+++++||-+.... ...+.+.+
T Consensus 96 W~~-------------~~~~~l~~~v~~yT~~vl~~--------l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ 154 (332)
T PF07745_consen 96 WAN-------------LSFDQLAKAVYDYTKDVLQA--------LKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAK 154 (332)
T ss_dssp CTS-------------SSHHHHHHHHHHHHHHHHHH--------HHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHH
T ss_pred CCC-------------CCHHHHHHHHHHHHHHHHHH--------HHHCCCCccEEEeCccccccccCcCCCccCHHHHHH
Confidence 321 12367888889999999988 76643 4667899999764321 23467788
Q ss_pred HHHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCccchhhccCcchhhccCCCCcceEEeeecCCCCCCCcchhhhH
Q 014151 229 WIDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPEMWASALGSDFIRNSNNDNIDFASVHIYPDHWFHDLEFEDDL 308 (430)
Q Consensus 229 w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~w~~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~ 308 (430)
.++..+++||+.+|+..|.+..+.-... ....|... .... ..-..|++++++||. |... .
T Consensus 155 ll~ag~~AVr~~~p~~kV~lH~~~~~~~--------~~~~~~f~----~l~~-~g~d~DviGlSyYP~-w~~~--l---- 214 (332)
T PF07745_consen 155 LLNAGIKAVREVDPNIKVMLHLANGGDN--------DLYRWFFD----NLKA-AGVDFDVIGLSYYPF-WHGT--L---- 214 (332)
T ss_dssp HHHHHHHHHHTHSSTSEEEEEES-TTSH--------HHHHHHHH----HHHH-TTGG-SEEEEEE-ST-TST---H----
T ss_pred HHHHHHHHHHhcCCCCcEEEEECCCCch--------HHHHHHHH----HHHh-cCCCcceEEEecCCC-Ccch--H----
Confidence 8999999999999999998865321000 00122211 0111 124578999999996 5431 1
Q ss_pred HHHHHHHHHHHHhhhhcCCCcEEEEecCCCCCC----------------C--CCChhHHHHHHHHHHHHHHHHHhcCCCc
Q 014151 309 KFVTKWMLSHIEDGDKELNKPVFFTEYGLSNLI----------------K--GFEPSLRDKLYKTILDIVYKSAKRKRSG 370 (430)
Q Consensus 309 ~~~~~~l~~~~~~a~~~~gkPv~v~EfG~~~~~----------------~--~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 370 (430)
+- +...+....+.++|||+|.|.|..... . ..+.+.+.++++.+++.+.+. . +..+
T Consensus 215 ~~----l~~~l~~l~~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~-p-~~~g 288 (332)
T PF07745_consen 215 ED----LKNNLNDLASRYGKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNV-P-NGGG 288 (332)
T ss_dssp HH----HHHHHHHHHHHHT-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS----TTE
T ss_pred HH----HHHHHHHHHHHhCCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHh-c-cCCe
Confidence 11 222223322238999999999987651 0 124678889999888766432 1 2368
Q ss_pred ccceeee
Q 014151 371 AGALIWQ 377 (430)
Q Consensus 371 ~G~~~W~ 377 (430)
.|.++|.
T Consensus 289 ~GvfYWe 295 (332)
T PF07745_consen 289 LGVFYWE 295 (332)
T ss_dssp EEEEEE-
T ss_pred EEEEeec
Confidence 9999993
No 21
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=4.1e-15 Score=160.86 Aligned_cols=155 Identities=19% Similarity=0.230 Sum_probs=121.2
Q ss_pred CCCCc--EEEeCCeEEECCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCC
Q 014151 37 PEMGF--VTRNGTHFMLDGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQF 114 (430)
Q Consensus 37 ~~~gf--v~~~g~~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~ 114 (430)
...|| |++..+.|.+||||++++|+|.|.....-.....++.++++|+.||++|+|+||++.+..
T Consensus 279 ~~iGfR~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRtsHyP~------------- 345 (808)
T COG3250 279 LRIGFRTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTSHYPN------------- 345 (808)
T ss_pred eeeccEEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEecCCCC-------------
Confidence 35788 666688999999999999999876544333344677799999999999999999974321
Q ss_pred ChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCC
Q 014151 115 DERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNT 194 (430)
Q Consensus 115 de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~ 194 (430)
+ ++.+++|+++||+||-.....|. | ...+++.++...+.++.+++|
T Consensus 346 ~-------~~~ydLcDelGllV~~Ea~~~~~---------------~---------~~~~~~~~k~~~~~i~~mver--- 391 (808)
T COG3250 346 S-------EEFYDLCDELGLLVIDEAMIETH---------------G---------MPDDPEWRKEVSEEVRRMVER--- 391 (808)
T ss_pred C-------HHHHHHHHHhCcEEEEecchhhc---------------C---------CCCCcchhHHHHHHHHHHHHh---
Confidence 1 26689999999999876543221 1 115788888999999999999
Q ss_pred cccccccCCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEccCC
Q 014151 195 ITGVEYRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGLEG 252 (430)
Q Consensus 195 ~tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g 252 (430)
.|+||+|+.|.++||...... +..+...+|+.||.++|..+...
T Consensus 392 -----~knHPSIiiWs~gNE~~~g~~---------~~~~~~~~k~~d~~r~~~~~~~~ 435 (808)
T COG3250 392 -----DRNHPSIIIWSLGNESGHGSN---------HWALYRWFKASDPTRPVQYEGRG 435 (808)
T ss_pred -----ccCCCcEEEEeccccccCccc---------cHHHHHHHhhcCCccceeccCcc
Confidence 999999999999999886432 24566678999999999987654
No 22
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=99.59 E-value=4.5e-14 Score=139.37 Aligned_cols=168 Identities=19% Similarity=0.273 Sum_probs=114.5
Q ss_pred eEEECCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHH
Q 014151 48 HFMLDGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIV 127 (430)
Q Consensus 48 ~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~ 127 (430)
+|++||||+++.+--.|+.... ++.|++.|+.||++|+|+|-++++ |+-+++.||+||-+....|+++|+
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p------~~~W~~~l~k~ka~G~n~v~~yv~----W~~he~~~g~~df~g~~dl~~f~~ 70 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIP------PEYWRDRLQKMKAAGLNTVSTYVP----WNLHEPEEGQFDFTGNRDLDRFLD 70 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-------GGGHHHHHHHHHHTT-SEEEEE------HHHHSSBTTB---SGGG-HHHHHH
T ss_pred CeEECCEEEEEEEeeeccccCC------hhHHHHHHHHHHhCCcceEEEecc----ccccCCCCCcccccchhhHHHHHH
Confidence 4889999999998887765533 688999999999999999999886 677899999999888899999999
Q ss_pred HHHHcCCEEEEec----cCCcccCCCcchhhhhhhhh-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccC
Q 014151 128 EARKNGVRLLLSL----VNNLQAYGGKTQYVNWAWEE-GIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRN 202 (430)
Q Consensus 128 ~A~~~Gi~vil~l----~~~w~~~gg~~~y~~W~~~~-G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~ 202 (430)
.|+++||+||+-. +..| ++||. |.|.... +..+ =-+|+...+..+++++.++..+ ....+++
T Consensus 71 ~a~~~gl~vilrpGpyi~aE~-~~gG~---P~Wl~~~~~~~~------R~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 137 (319)
T PF01301_consen 71 LAQENGLYVILRPGPYICAEW-DNGGL---PAWLLRKPDIRL------RTNDPPFLEAVERWYRALAKII---KPLQYTN 137 (319)
T ss_dssp HHHHTT-EEEEEEES---TTB-GGGG-----GGGGGSTTS-S------SSS-HHHHHHHHHHHHHHHHHH---GGGBGGG
T ss_pred HHHHcCcEEEecccceecccc-cchhh---hhhhhccccccc------cccchhHHHHHHHHHHHHHHHH---HhhhhcC
Confidence 9999999999943 3345 35665 5776542 1111 1346888888888888877763 2355666
Q ss_pred CCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 014151 203 DPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKK 243 (430)
Q Consensus 203 ~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~ 243 (430)
.-.|++.++.||..... .-+++++.+.+..++.-++
T Consensus 138 GGpII~vQvENEyg~~~-----~~~~Y~~~l~~~~~~~g~~ 173 (319)
T PF01301_consen 138 GGPIIMVQVENEYGSYG-----TDRAYMEALKDAYRDWGID 173 (319)
T ss_dssp TSSEEEEEESSSGGCTS-----S-HHHHHHHHHHHHHTT-S
T ss_pred CCceehhhhhhhhCCCc-----ccHhHHHHHHHHHHHhhCc
Confidence 67899999999988432 2345566666666665554
No 23
>PLN03059 beta-galactosidase; Provisional
Probab=99.59 E-value=9.4e-14 Score=148.76 Aligned_cols=183 Identities=15% Similarity=0.210 Sum_probs=137.4
Q ss_pred cEEEeCCeEEECCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHH
Q 014151 41 FVTRNGTHFMLDGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFK 120 (430)
Q Consensus 41 fv~~~g~~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~ 120 (430)
-|+.++..|++||||+++.+-..|+... .++.|++.|+.||++|+|+|-++++ |+.+||.||+||-+...
T Consensus 29 ~v~~d~~~f~idG~p~~i~sG~iHY~R~------~p~~W~d~L~k~Ka~GlNtV~tYV~----Wn~HEp~~G~~dF~G~~ 98 (840)
T PLN03059 29 SVSYDHRAFIINGQRRILISGSIHYPRS------TPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEPSPGNYYFEDRY 98 (840)
T ss_pred EEEEeCCEEEECCEEEEEEEeCcccCcC------CHHHHHHHHHHHHHcCCCeEEEEec----ccccCCCCCeeeccchH
Confidence 4889999999999999999888887653 3799999999999999999999998 77789999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEe----ccCCcccCCCcchhhhhhhh-hCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCc
Q 014151 121 ALDHVIVEARKNGVRLLLS----LVNNLQAYGGKTQYVNWAWE-EGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTI 195 (430)
Q Consensus 121 ~lD~~l~~A~~~Gi~vil~----l~~~w~~~gg~~~y~~W~~~-~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~ 195 (430)
.|.++|++|++.||+||+- .+..| ++||. |.|... .|..+ + -+||...++.++|+++|+.++- -
T Consensus 99 DL~~Fl~la~e~GLyvilRpGPYIcAEw-~~GGl---P~WL~~~~~i~~----R--s~d~~fl~~v~~~~~~l~~~l~-~ 167 (840)
T PLN03059 99 DLVKFIKVVQAAGLYVHLRIGPYICAEW-NFGGF---PVWLKYVPGIEF----R--TDNGPFKAAMQKFTEKIVDMMK-S 167 (840)
T ss_pred HHHHHHHHHHHcCCEEEecCCcceeeee-cCCCC---chhhhcCCCccc----c--cCCHHHHHHHHHHHHHHHHHHh-h
Confidence 9999999999999999994 34457 47887 577642 12111 0 2478899999999998888720 0
Q ss_pred ccccccCCCceeEEeecCCCCCCCC---CChHHHHHHHHHHHHHHHhcCCCCEEE
Q 014151 196 TGVEYRNDPTIFAWELINEPRCMSD---PSGDTLQDWIDEMSAFVKSIDKKHLVT 247 (430)
Q Consensus 196 tg~~yk~~p~I~~wel~NEp~~~~~---~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 247 (430)
.+..+++--.|++.++.||-..... .......+|+++| .++.+-+.+..
T Consensus 168 ~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~---~~~~Gi~VPl~ 219 (840)
T PLN03059 168 EKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADM---AVKLGTGVPWV 219 (840)
T ss_pred cceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHH---HHHcCCCcceE
Confidence 2334566668999999999875421 1223455555555 45555554443
No 24
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=99.55 E-value=1.1e-12 Score=133.37 Aligned_cols=321 Identities=16% Similarity=0.205 Sum_probs=195.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccC-C--CCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcc
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQIS-P--GQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKT 151 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~-p--g~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~ 151 (430)
...++.+|++.|+++|+++.|+ +. +|+++.|. . +..++++++.+..+|++..++||.++++|++ |+.
T Consensus 89 ~Yh~ykeDv~Lmk~lgv~afRF---SI-sWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfH-wDl----- 158 (524)
T KOG0626|consen 89 FYHRYKEDVKLMKELGVDAFRF---SI-SWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFH-WDL----- 158 (524)
T ss_pred hhhhhHHHHHHHHHcCCCeEEE---Ee-ehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEec-CCC-----
Confidence 3568999999999999999998 33 58888764 2 4589999999999999999999999999985 752
Q ss_pred hhhhhhhhh-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCC----------
Q 014151 152 QYVNWAWEE-GIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSD---------- 220 (430)
Q Consensus 152 ~y~~W~~~~-G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~---------- 220 (430)
|++..+. |+ |-+++.++.|++|.+-+.++ |+| .|-.|.++|||.....
T Consensus 159 --Pq~LeDeYgG---------wLn~~ivedF~~yA~~CF~~--------fGD--rVK~WiT~NEP~v~s~~gY~~G~~aP 217 (524)
T KOG0626|consen 159 --PQALEDEYGG---------WLNPEIVEDFRDYADLCFQE--------FGD--RVKHWITFNEPNVFSIGGYDTGTKAP 217 (524)
T ss_pred --CHHHHHHhcc---------ccCHHHHHHHHHHHHHHHHH--------hcc--cceeeEEecccceeeeehhccCCCCC
Confidence 4555432 22 77899999999999999999 999 5999999999994321
Q ss_pred --C-----------C-hH------HHHHHHHHHHHHHHhc-CC--CCEEEEccCCccCCCCCCCcc-cC--------ccc
Q 014151 221 --P-----------S-GD------TLQDWIDEMSAFVKSI-DK--KHLVTVGLEGFYGPKSPKRLT-VN--------PEM 268 (430)
Q Consensus 221 --~-----------~-~~------~~~~w~~~~~~~Ir~~-dp--~~lV~~G~~g~~~~~~~~~~~-~n--------p~~ 268 (430)
+ + .+ .+.--+.+.....|+. .+ +=.|.+.....|-.+...... .. .-+
T Consensus 218 GrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~~~~w~eP~~~s~~D~~Aa~Ra~~F~~g 297 (524)
T KOG0626|consen 218 GRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIALSARWFEPYDDSKEDKEAAERALDFFLG 297 (524)
T ss_pred CCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEEeeeeeccCCCChHHHHHHHHHHHhhhh
Confidence 0 0 01 1111122333333432 21 123333222222111100000 00 002
Q ss_pred hhhc--cCcchhh------------------ccCCCCcceEEeeecCCCCCCC----c-----------c--h--hh---
Q 014151 269 WASA--LGSDFIR------------------NSNNDNIDFASVHIYPDHWFHD----L-----------E--F--ED--- 306 (430)
Q Consensus 269 w~~~--~g~df~~------------------~~~~~~iD~~s~H~Y~~~w~~~----~-----------~--~--~~--- 306 (430)
|.-. ...|+.. .+-....||+++++|....... . . . ..
T Consensus 298 w~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 377 (524)
T KOG0626|consen 298 WFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKHLKPPPDPSQPGWSTDSGVDWTLEGNDL 377 (524)
T ss_pred hhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhccCCCCCCCCcccccccceeeeeccccc
Confidence 3211 0111210 0112456999999985321100 0 0 0 00
Q ss_pred --------hHHHHHHHHHHHHHhhhh-cCCCcEEEEecCCCCCCC-------CCChhHHHHHHHHHHHHHHHHHh-cCCC
Q 014151 307 --------DLKFVTKWMLSHIEDGDK-ELNKPVFFTEYGLSNLIK-------GFEPSLRDKLYKTILDIVYKSAK-RKRS 369 (430)
Q Consensus 307 --------~~~~~~~~l~~~~~~a~~-~~gkPv~v~EfG~~~~~~-------~~~~~~r~~~~~~~~~~~~~~~~-~~~~ 369 (430)
.+.....-++..+...+. ..+.|++|+|.|...... ...+..|..|++..+..+.++++ .+..
T Consensus 378 ~~~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvn 457 (524)
T KOG0626|consen 378 IGPKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDGVN 457 (524)
T ss_pred ccccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhcCCc
Confidence 000001113333344433 357889999999988632 12468899999999999999887 6778
Q ss_pred cccceeeeeccCCCccCCCCce----EEcCC--CccHHHHHHHHHHHHhhccccc---cccchhHhhhc
Q 014151 370 GAGALIWQLFVEGMEEYNDDFG----IVPWE--RTSTYKLLTEQSCGLGRISRLN---LEKGNLKELCS 429 (430)
Q Consensus 370 ~~G~~~W~~~~~~~~~~~dg~~----i~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 429 (430)
+.|+++|++.|+ .+|.+||+ +++.| ++ ..+..+.+++-++..=..+ .+....++||+
T Consensus 458 v~GYf~WSLmDn--fEw~~Gy~~RFGlyyVDf~d~-l~R~pK~Sa~wy~~fl~~~~~~~~~~~~~~l~~ 523 (524)
T KOG0626|consen 458 VKGYFVWSLLDN--FEWLDGYKVRFGLYYVDFKDP-LKRYPKLSAKWYKKFLKGKVKPHESQGIKELHP 523 (524)
T ss_pred eeeEEEeEcccc--hhhhcCcccccccEEEeCCCC-CcCCchhHHHHHHHHHcCCCCCccccchhhcCC
Confidence 999999999998 88988876 33322 24 4466677777777552222 23444455554
No 25
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.52 E-value=7.8e-13 Score=126.91 Aligned_cols=235 Identities=17% Similarity=0.293 Sum_probs=119.0
Q ss_pred CCCCCcEEEeCCeEE--ECCeEEEEEeeecccccccc-----CCC-CCHHHHHHHHHHHHHcCCCEEEEccccCCCCCcc
Q 014151 36 EPEMGFVTRNGTHFM--LDGKALYVNGWNSYWLMDHA-----VHD-YSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSL 107 (430)
Q Consensus 36 ~~~~gfv~~~g~~f~--~~G~~~~~~G~N~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~ 107 (430)
.++...|+++|.+|+ .+|++|+++|+.+ +..... .+| .+.+..++|+..|+++|+|+||++.... ..
T Consensus 5 ~~~~~pI~ikG~kff~~~~g~~F~ikGVaY-Qp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp----~~ 79 (314)
T PF03198_consen 5 AAAVPPIEIKGNKFFYSKNGTRFFIKGVAY-QPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDP----SK 79 (314)
T ss_dssp STTS--EEEETTEEEETTT--B--EEEEE-----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---T----TS
T ss_pred hccCCCEEEECCEeEECCCCCEEEEeeEEc-ccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCC----CC
Confidence 346678999999999 5999999999984 333221 133 3578999999999999999999976531 00
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCH--HHHHHHHHHH
Q 014151 108 QISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDP--SIHKYFKHYV 185 (430)
Q Consensus 108 ~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~--~~~~~~~~~~ 185 (430)
.=|+.+.+..+.|||||++|... .+..+. .+| ..-..+.+..
T Consensus 80 -------------nHd~CM~~~~~aGIYvi~Dl~~p---~~sI~r--------------------~~P~~sw~~~l~~~~ 123 (314)
T PF03198_consen 80 -------------NHDECMSAFADAGIYVILDLNTP---NGSINR--------------------SDPAPSWNTDLLDRY 123 (314)
T ss_dssp ---------------HHHHHHHHHTT-EEEEES-BT---TBS--T--------------------TS------HHHHHHH
T ss_pred -------------CHHHHHHHHHhCCCEEEEecCCC---CccccC--------------------CCCcCCCCHHHHHHH
Confidence 12688999999999999999642 111110 112 2222334444
Q ss_pred HHHHhccCCcccccccCCCceeEEeecCCCCCCCC--CChHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcc
Q 014151 186 KTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSD--PSGDTLQDWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLT 263 (430)
Q Consensus 186 ~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~--~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~ 263 (430)
..++.. ++..|+++++-.+||-..... ..++-+++.+++|.++|++... |.|-+|... .+..+ .
T Consensus 124 ~~vid~--------fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~-R~IPVGYsa---aD~~~-~- 189 (314)
T PF03198_consen 124 FAVIDA--------FAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGY-RSIPVGYSA---ADDAE-I- 189 (314)
T ss_dssp HHHHHH--------HTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE------TT-T-
T ss_pred HHHHHH--------hccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCC-CCCceeEEc---cCChh-H-
Confidence 555666 888999999999999764322 1245567888999999998665 334444311 11110 0
Q ss_pred cCccchhh-ccCcchhhccCCCCcceEEeeecCCCCCCCcchhhhHHHHHHHHHHHHHhhhhcCCCcEEEEecCCCCCC
Q 014151 264 VNPEMWAS-ALGSDFIRNSNNDNIDFASVHIYPDHWFHDLEFEDDLKFVTKWMLSHIEDGDKELNKPVFFTEYGLSNLI 341 (430)
Q Consensus 264 ~np~~w~~-~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~a~~~~gkPv~v~EfG~~~~~ 341 (430)
.+.-+.| ..|. ....+||++++.|. |-...++.. .-........+. +..|++++|||.-...
T Consensus 190 -r~~~a~Yl~Cg~------~~~~iDf~g~N~Y~--WCg~Stf~~------SGy~~l~~~f~~-y~vPvffSEyGCn~~~ 252 (314)
T PF03198_consen 190 -RQDLANYLNCGD------DDERIDFFGLNSYE--WCGDSTFET------SGYDRLTKEFSN-YSVPVFFSEYGCNTVT 252 (314)
T ss_dssp -HHHHHHHTTBTT-----------S-EEEEE------SS--HHH------HSHHHHHHHHTT--SS-EEEEEE---SSS
T ss_pred -HHHHHHHhcCCC------cccccceeeeccce--ecCCCcccc------ccHHHHHHHhhC-CCCCeEEcccCCCCCC
Confidence 0111222 1121 22579999999998 765433321 111222333443 8999999999987654
No 26
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=99.50 E-value=8.8e-13 Score=128.56 Aligned_cols=167 Identities=22% Similarity=0.354 Sum_probs=99.7
Q ss_pred CCeEE-ECCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCC-CC------C--ccc-cCC---
Q 014151 46 GTHFM-LDGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDG-GY------N--SLQ-ISP--- 111 (430)
Q Consensus 46 g~~f~-~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g-~~------~--~~~-~~p--- 111 (430)
+..|+ .||+||++.|...|-+.... +.++++..|+..++.|+|+||+-++..- +. + ++. ..+
T Consensus 2 ~r~f~~~dG~Pff~lgdT~W~~~~~~----~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~ 77 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLGDTAWSLFHRL----TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQF 77 (289)
T ss_dssp SSSEEETTS-B--EEEEE-TTHHHH------HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT----
T ss_pred CceEecCCCCEEeehhHHHHHHhhCC----CHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCcccc
Confidence 45677 49999999998755444332 4788999999999999999999766431 01 1 111 112
Q ss_pred --CCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchh--hhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 014151 112 --GQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQY--VNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKT 187 (430)
Q Consensus 112 --g~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y--~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~ 187 (430)
..++++.|+++|++|+.|.++||.+.|.+. |... | ..|.. | . +.-..+..++|++.
T Consensus 78 d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~--wg~~-----~~~~~Wg~--~-------~----~~m~~e~~~~Y~~y 137 (289)
T PF13204_consen 78 DFTRPNPAYFDHLDRRIEKANELGIEAALVPF--WGCP-----YVPGTWGF--G-------P----NIMPPENAERYGRY 137 (289)
T ss_dssp --TT----HHHHHHHHHHHHHHTT-EEEEESS---HHH-----HH----------------T----TSS-HHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEE--ECCc-----cccccccc--c-------c----cCCCHHHHHHHHHH
Confidence 237899999999999999999999966543 4110 1 12421 0 0 11124556899999
Q ss_pred HHhccCCcccccccCCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEcc
Q 014151 188 VLTRKNTITGVEYRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGL 250 (430)
Q Consensus 188 lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~ 250 (430)
|++| |+..|+|+ |.|.||- ... ..-.+..++|++.||+.||.+|+|+-.
T Consensus 138 v~~R--------y~~~~Nvi-W~l~gd~-~~~----~~~~~~w~~~~~~i~~~dp~~L~T~H~ 186 (289)
T PF13204_consen 138 VVAR--------YGAYPNVI-WILGGDY-FDT----EKTRADWDAMARGIKENDPYQLITIHP 186 (289)
T ss_dssp HHHH--------HTT-SSEE-EEEESSS---T----TSSHHHHHHHHHHHHHH--SS-EEEEE
T ss_pred HHHH--------HhcCCCCE-EEecCcc-CCC----CcCHHHHHHHHHHHHhhCCCCcEEEeC
Confidence 9999 99999998 9999998 221 223344579999999999988988753
No 27
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.48 E-value=2.3e-12 Score=123.56 Aligned_cols=220 Identities=18% Similarity=0.332 Sum_probs=142.0
Q ss_pred CCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHH
Q 014151 104 YNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKH 183 (430)
Q Consensus 104 ~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~ 183 (430)
|..++|++|.|| ++..|++++.|+++||+|.--.. -|.. +.|.|.... ..++.++.+.+
T Consensus 3 W~~~ep~~G~~n---~~~~D~~~~~a~~~gi~v~gH~l-~W~~-----~~P~W~~~~------------~~~~~~~~~~~ 61 (254)
T smart00633 3 WDSTEPSRGQFN---FSGADAIVNFAKENGIKVRGHTL-VWHS-----QTPDWVFNL------------SKETLLARLEN 61 (254)
T ss_pred cccccCCCCccC---hHHHHHHHHHHHHCCCEEEEEEE-eecc-----cCCHhhhcC------------CHHHHHHHHHH
Confidence 677899999998 88899999999999999843111 1532 236776421 13567899999
Q ss_pred HHHHHHhccCCcccccccCCCceeEEeecCCCCCCCCC------ChHHH-HHHHHHHHHHHHhcCCCCEEEEccCCccCC
Q 014151 184 YVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSDP------SGDTL-QDWIDEMSAFVKSIDKKHLVTVGLEGFYGP 256 (430)
Q Consensus 184 ~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~------~~~~~-~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~ 256 (430)
|++.+++| |++. |..|++.|||...... ..+.+ ..|+....+++|+.||+..+.+.. |+.
T Consensus 62 ~i~~v~~r--------y~g~--i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd---y~~ 128 (254)
T smart00633 62 HIKTVVGR--------YKGK--IYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND---YNT 128 (254)
T ss_pred HHHHHHHH--------hCCc--ceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec---cCC
Confidence 99999999 9874 8889999999864310 00111 268888999999999998887752 121
Q ss_pred CCCCCcccCccchhhccCcchhhcc--CCCCcceEEe--eecCCCCCCCcchhhhHHHHHHHHHHHHHhhhhcCCCcEEE
Q 014151 257 KSPKRLTVNPEMWASALGSDFIRNS--NNDNIDFASV--HIYPDHWFHDLEFEDDLKFVTKWMLSHIEDGDKELNKPVFF 332 (430)
Q Consensus 257 ~~~~~~~~np~~w~~~~g~df~~~~--~~~~iD~~s~--H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~a~~~~gkPv~v 332 (430)
..+. ..... =..+...+ ..-.||-+++ |.+... + +. + .+.+.++...+ .|+||+|
T Consensus 129 ~~~~------~k~~~--~~~~v~~l~~~g~~iDgiGlQ~H~~~~~--~--~~----~----~~~~~l~~~~~-~g~pi~i 187 (254)
T smart00633 129 EEPN------AKRQA--IYELVKKLKAKGVPIDGIGLQSHLSLGS--P--NI----A----EIRAALDRFAS-LGLEIQI 187 (254)
T ss_pred cCcc------HHHHH--HHHHHHHHHHCCCccceeeeeeeecCCC--C--CH----H----HHHHHHHHHHH-cCCceEE
Confidence 1110 00000 00111111 1112676655 544321 1 11 1 23444444454 7999999
Q ss_pred EecCCCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCcccceeeeeccCCCccCC
Q 014151 333 TEYGLSNLIKGFEPSLRDKLYKTILDIVYKSAKRKRSGAGALIWQLFVEGMEEYN 387 (430)
Q Consensus 333 ~EfG~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~~~~~~~ 387 (430)
+|+++.... +++.++++|+.++..+.+. +.+.|.++|.+.+. .+|.
T Consensus 188 TE~dv~~~~---~~~~qA~~~~~~l~~~~~~----p~v~gi~~Wg~~d~--~~W~ 233 (254)
T smart00633 188 TELDISGYP---NPQAQAADYEEVFKACLAH----PAVTGVTVWGVTDK--YSWL 233 (254)
T ss_pred EEeecCCCC---cHHHHHHHHHHHHHHHHcC----CCeeEEEEeCCccC--Cccc
Confidence 999998753 2367888888888877653 46899999999876 3563
No 28
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=99.39 E-value=5.9e-13 Score=106.54 Aligned_cols=75 Identities=32% Similarity=0.663 Sum_probs=47.6
Q ss_pred ccCCCceeEEeecCC-CCCCC--------CCChHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCccchh
Q 014151 200 YRNDPTIFAWELINE-PRCMS--------DPSGDTLQDWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPEMWA 270 (430)
Q Consensus 200 yk~~p~I~~wel~NE-p~~~~--------~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~w~ 270 (430)
|+++|+|++|||+|| |.... ....+.+.+|+++++++||++||+|+||+|..+. ..
T Consensus 5 ~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g~~~~---~~------------ 69 (88)
T PF12876_consen 5 FGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSGFWGG---DW------------ 69 (88)
T ss_dssp TT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--B--S----T------------
T ss_pred hcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEeecccC---CH------------
Confidence 999999999999999 76211 1124778999999999999999999999975321 10
Q ss_pred hccCcchhhccCCCCcceEEeeec
Q 014151 271 SALGSDFIRNSNNDNIDFASVHIY 294 (430)
Q Consensus 271 ~~~g~df~~~~~~~~iD~~s~H~Y 294 (430)
..+ .....+.+||+++|.|
T Consensus 70 ----~~~-~~~~~~~~DvisfH~Y 88 (88)
T PF12876_consen 70 ----EDL-EQLQAENLDVISFHPY 88 (88)
T ss_dssp ----THH-HHS--TT-SSEEB-EE
T ss_pred ----HHH-HHhchhcCCEEeeecC
Confidence 012 2234589999999998
No 29
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=3.2e-11 Score=123.28 Aligned_cols=115 Identities=25% Similarity=0.245 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHcCCCEEEEccccCCCCCcccc----CCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchh
Q 014151 78 RVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQI----SPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQY 153 (430)
Q Consensus 78 ~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~----~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y 153 (430)
..++++..|+++|+|+||+... |-.++. .|.....+.+..||++|++|+++||+|++++|.. .|+....
T Consensus 74 ~~~~~~~~ik~~G~n~VRiPi~----~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~---~~~~~~~ 146 (407)
T COG2730 74 ITEEDFDQIKSAGFNAVRIPIG----YWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGY---PGGNNGH 146 (407)
T ss_pred hhhhHHHHHHHcCCcEEEcccc----hhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEeccc---CCCCCCc
Confidence 3489999999999999999442 112222 3444445666799999999999999999999863 2332110
Q ss_pred hhhhhhhCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCC
Q 014151 154 VNWAWEEGIGISSSNDSFFFD-PSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRC 217 (430)
Q Consensus 154 ~~W~~~~G~~~~~~~~~f~~d-~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~ 217 (430)
. . ......|.. .+..+.+.+.|+.+++| |++.+.|+++++.|||..
T Consensus 147 ~---------~-s~~~~~~~~~~~~~~~~~~~w~~ia~~--------f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 147 E---------H-SGYTSDYKEENENVEATIDIWKFIANR--------FKNYDTVIGFELINEPNG 193 (407)
T ss_pred C---------c-ccccccccccchhHHHHHHHHHHHHHh--------ccCCCceeeeeeecCCcc
Confidence 0 0 111222333 56789999999999999 999999999999999995
No 30
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=1.1e-10 Score=120.84 Aligned_cols=155 Identities=17% Similarity=0.221 Sum_probs=123.7
Q ss_pred CCcEEEeCCeEEECCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHH
Q 014151 39 MGFVTRNGTHFMLDGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERV 118 (430)
Q Consensus 39 ~gfv~~~g~~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~ 118 (430)
..-|..++..|.+||+++.+.+...||.... ++.|++.++++|+.|+|+|-+++| |+-++|.||.|+-..
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~------pe~W~~~i~k~k~~Gln~IqtYVf----Wn~Hep~~g~y~FsG 86 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRST------PEMWPDLIKKAKAGGLNVIQTYVF----WNLHEPSPGKYDFSG 86 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCC------hhhhHHHHHHHHhcCCceeeeeee----cccccCCCCcccccc
Confidence 3346677889999999999888877776543 799999999999999999999998 667899999999888
Q ss_pred HHHHHHHHHHHHHcCCEEEEec----cCCcccCCCcchhhhhhhhhCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHhccC
Q 014151 119 FKALDHVIVEARKNGVRLLLSL----VNNLQAYGGKTQYVNWAWEEGIGISSSNDSFF-FDPSIHKYFKHYVKTVLTRKN 193 (430)
Q Consensus 119 l~~lD~~l~~A~~~Gi~vil~l----~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~-~d~~~~~~~~~~~~~lv~R~n 193 (430)
.-.|-++|.+|++.|++|++-+ ...| ++||.+ -|.... ....|- .|+..++.++++++.|+.+.+
T Consensus 87 ~~DlvkFikl~~~~GLyv~LRiGPyIcaEw-~~GG~P---~wL~~~------pg~~~Rt~nepfk~~~~~~~~~iv~~mk 156 (649)
T KOG0496|consen 87 RYDLVKFIKLIHKAGLYVILRIGPYICAEW-NFGGLP---WWLRNV------PGIVFRTDNEPFKAEMERWTTKIVPMMK 156 (649)
T ss_pred hhHHHHHHHHHHHCCeEEEecCCCeEEecc-cCCCcc---hhhhhC------CceEEecCChHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999954 4457 478875 454321 112333 357899999999999999754
Q ss_pred CcccccccCCCceeEEeecCCCC
Q 014151 194 TITGVEYRNDPTIFAWELINEPR 216 (430)
Q Consensus 194 ~~tg~~yk~~p~I~~wel~NEp~ 216 (430)
..-+++---|++-++.||-.
T Consensus 157 ---~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 157 ---KLFASQGGPIILVQIENEYG 176 (649)
T ss_pred ---HHHhhcCCCEEEEEeechhh
Confidence 55567777788899999977
No 31
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=4.5e-09 Score=99.11 Aligned_cols=250 Identities=17% Similarity=0.190 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc--CCcccCCCcchhh
Q 014151 77 ARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLV--NNLQAYGGKTQYV 154 (430)
Q Consensus 77 ~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~--~~w~~~gg~~~y~ 154 (430)
...++.|+.+|+.|+|.||+-++.+.....=+.--|.. ..++..-++-..|+..||||++++| ++|.+.+-+..--
T Consensus 63 g~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGn--nD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPk 140 (403)
T COG3867 63 GVRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGN--NDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPK 140 (403)
T ss_pred ChHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCc--chHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcH
Confidence 45667799999999999998555432000000000111 2255556777788899999999998 3465554322112
Q ss_pred hhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCC-ceeEEeecCCCCCCCC-C-----ChHHHH
Q 014151 155 NWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDP-TIFAWELINEPRCMSD-P-----SGDTLQ 227 (430)
Q Consensus 155 ~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p-~I~~wel~NEp~~~~~-~-----~~~~~~ 227 (430)
.|... .-...+.+..+|-+.+++. .++.. .+-+-+++||-+...- + .-+.+.
T Consensus 141 aW~~l-------------~fe~lk~avy~yTk~~l~~--------m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a 199 (403)
T COG3867 141 AWENL-------------NFEQLKKAVYSYTKYVLTT--------MKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMA 199 (403)
T ss_pred Hhhhc-------------CHHHHHHHHHHHHHHHHHH--------HHHcCCCccceEeccccCCceeccCCCCcChHHHH
Confidence 23311 1145677777888888887 66654 3456799999875321 1 224566
Q ss_pred HHHHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCcc--chhhccCcchhhc-cCCCCcceEEeeecCCCCCCCcch
Q 014151 228 DWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPE--MWASALGSDFIRN-SNNDNIDFASVHIYPDHWFHDLEF 304 (430)
Q Consensus 228 ~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~--~w~~~~g~df~~~-~~~~~iD~~s~H~Y~~~w~~~~~~ 304 (430)
+.+++-+.+||+.+|+.+|.+-.. .++ +++ .|-. ... -..-..|++..-+||. |..+ .
T Consensus 200 ~L~n~g~~avrev~p~ikv~lHla------~g~----~n~~y~~~f------d~ltk~nvdfDVig~SyYpy-Whgt--l 260 (403)
T COG3867 200 ALLNAGIRAVREVSPTIKVALHLA------EGE----NNSLYRWIF------DELTKRNVDFDVIGSSYYPY-WHGT--L 260 (403)
T ss_pred HHHHHHhhhhhhcCCCceEEEEec------CCC----CCchhhHHH------HHHHHcCCCceEEeeecccc-ccCc--H
Confidence 677888899999999998887531 111 222 2221 110 0122457889999997 5432 1
Q ss_pred hhhHHHHHHHHHHHHHhhhhcCCCcEEEEecCCCCC---CC-------------CC--ChhHHHHHHHHHHHHHHHHHhc
Q 014151 305 EDDLKFVTKWMLSHIEDGDKELNKPVFFTEYGLSNL---IK-------------GF--EPSLRDKLYKTILDIVYKSAKR 366 (430)
Q Consensus 305 ~~~~~~~~~~l~~~~~~a~~~~gkPv~v~EfG~~~~---~~-------------~~--~~~~r~~~~~~~~~~~~~~~~~ 366 (430)
.-+..-+. ..+.+ ++|-|+|.|.+.... ++ ++ +.+.|+.+.+++++.+.+--.
T Consensus 261 ----~nL~~nl~---dia~r-Y~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nvp~- 331 (403)
T COG3867 261 ----NNLTTNLN---DIASR-YHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNVPK- 331 (403)
T ss_pred ----HHHHhHHH---HHHHH-hcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhCCC-
Confidence 11111121 23343 899999999987321 00 12 236778999999988765422
Q ss_pred CCCcccceeeee
Q 014151 367 KRSGAGALIWQL 378 (430)
Q Consensus 367 ~~~~~G~~~W~~ 378 (430)
....|.|+|.=
T Consensus 332 -~~GlGvFYWEp 342 (403)
T COG3867 332 -SNGLGVFYWEP 342 (403)
T ss_pred -CCceEEEEecc
Confidence 23789999964
No 32
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=3.3e-10 Score=120.06 Aligned_cols=175 Identities=21% Similarity=0.331 Sum_probs=125.1
Q ss_pred eCCeEEECCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHH
Q 014151 45 NGTHFMLDGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDH 124 (430)
Q Consensus 45 ~g~~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~ 124 (430)
++..|+++|+++.+.|..++.-. +.++.+.++|+.||++|+|+||+-.| .|..++|+.|.||-+ .+|.
T Consensus 4 ~~~~~~~dg~~~~l~gG~y~p~~------~p~~~w~ddl~~mk~~G~N~V~ig~f---aW~~~eP~eG~fdf~---~~D~ 71 (673)
T COG1874 4 DGYSFIRDGRRILLYGGDYYPER------WPRETWMDDLRKMKALGLNTVRIGYF---AWNLHEPEEGKFDFT---WLDE 71 (673)
T ss_pred cccceeeCCceeEEeccccChHH------CCHHHHHHHHHHHHHhCCCeeEeeeE---EeeccCccccccCcc---cchH
Confidence 46678889999999998754322 23589999999999999999999333 388899999999955 6666
Q ss_pred H-HHHHHHcCCEEEEeccCCcccCCCcc-----hhhhhhhh--hCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHhccCC
Q 014151 125 V-IVEARKNGVRLLLSLVNNLQAYGGKT-----QYVNWAWE--EGIGI--SSSNDSFFFDPSIHKYFKHYVKTVLTRKNT 194 (430)
Q Consensus 125 ~-l~~A~~~Gi~vil~l~~~w~~~gg~~-----~y~~W~~~--~G~~~--~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~ 194 (430)
. ++.|.+.||+||+.--. .|+.+ .||.|... .|... +..++-.++++-.++....+.+.+++|
T Consensus 72 ~~l~~a~~~Gl~vil~t~P----~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer--- 144 (673)
T COG1874 72 IFLERAYKAGLYVILRTGP----TGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRER--- 144 (673)
T ss_pred HHHHHHHhcCceEEEecCC----CCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHH---
Confidence 6 99999999999997521 12221 12332211 11110 123345577887888888888889988
Q ss_pred cccccccCCCceeEEeecCCCCCCC---CCChHHHHHHHHHHHHHHHhcCC
Q 014151 195 ITGVEYRNDPTIFAWELINEPRCMS---DPSGDTLQDWIDEMSAFVKSIDK 242 (430)
Q Consensus 195 ~tg~~yk~~p~I~~wel~NEp~~~~---~~~~~~~~~w~~~~~~~Ir~~dp 242 (430)
.|+++|+|++|.+-||-.+.. ..+.+.++.|+++-...|+.++-
T Consensus 145 ----~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~ 191 (673)
T COG1874 145 ----LYGNGPAVITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNE 191 (673)
T ss_pred ----HhccCCceeEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhh
Confidence 499999999999999976632 22467778898876666665544
No 33
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.99 E-value=2.5e-09 Score=105.99 Aligned_cols=244 Identities=19% Similarity=0.293 Sum_probs=147.3
Q ss_pred HHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEE-eccCCcccCCCcchhhhhhhhhCCC
Q 014151 85 AGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLL-SLVNNLQAYGGKTQYVNWAWEEGIG 163 (430)
Q Consensus 85 ~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil-~l~~~w~~~gg~~~y~~W~~~~G~~ 163 (430)
.+-..-+|.+=. . ++.-|..+++.+|+|+ ++..|++++.|+++||+|-- +|. |+. +-|.|....
T Consensus 29 ~~~~~~Fn~~t~-e-N~~Kw~~~e~~~g~~~---~~~~D~~~~~a~~~g~~vrGH~Lv--W~~-----~~P~w~~~~--- 93 (320)
T PF00331_consen 29 ELFAKHFNSVTP-E-NEMKWGSIEPEPGRFN---FESADAILDWARENGIKVRGHTLV--WHS-----QTPDWVFNL--- 93 (320)
T ss_dssp HHHHHH-SEEEE-S-STTSHHHHESBTTBEE----HHHHHHHHHHHHTT-EEEEEEEE--ESS-----SS-HHHHTS---
T ss_pred HHHHHhCCeeee-c-cccchhhhcCCCCccC---ccchhHHHHHHHhcCcceeeeeEE--Ecc-----cccceeeec---
Confidence 333455786664 1 1224677888999998 78899999999999999954 221 532 236787531
Q ss_pred CCCCCCCCCCCH---HHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCCC------C--hHHH-HHHHH
Q 014151 164 ISSSNDSFFFDP---SIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSDP------S--GDTL-QDWID 231 (430)
Q Consensus 164 ~~~~~~~f~~d~---~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~------~--~~~~-~~w~~ 231 (430)
.-+... ..++..+++|+.+++| |++...|.+|++.|||-..... + .+.+ ..++.
T Consensus 94 ------~~~~~~~~~~~~~~l~~~I~~v~~~--------y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~ 159 (320)
T PF00331_consen 94 ------ANGSPDEKEELRARLENHIKTVVTR--------YKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIA 159 (320)
T ss_dssp ------TTSSBHHHHHHHHHHHHHHHHHHHH--------TTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHH
T ss_pred ------cCCCcccHHHHHHHHHHHHHHHHhH--------hccccceEEEEEeeecccCCCccccccCChhhhcccHhHHH
Confidence 001222 3899999999999999 9988899999999999865420 0 0111 24778
Q ss_pred HHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCccchhhccCcchhhcc--CCCCcceE--EeeecCCCCCCCcchhhh
Q 014151 232 EMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPEMWASALGSDFIRNS--NNDNIDFA--SVHIYPDHWFHDLEFEDD 307 (430)
Q Consensus 232 ~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~w~~~~g~df~~~~--~~~~iD~~--s~H~Y~~~w~~~~~~~~~ 307 (430)
.+.+..|+.+|+....+..-+. ..+ ...... ...++.+ ..-.||-+ +.|+-....
T Consensus 160 ~aF~~A~~~~P~a~L~~NDy~~---~~~-------~k~~~~--~~lv~~l~~~gvpIdgIG~Q~H~~~~~~--------- 218 (320)
T PF00331_consen 160 DAFRAAREADPNAKLFYNDYNI---ESP-------AKRDAY--LNLVKDLKARGVPIDGIGLQSHFDAGYP--------- 218 (320)
T ss_dssp HHHHHHHHHHTTSEEEEEESST---TST-------HHHHHH--HHHHHHHHHTTHCS-EEEEEEEEETTSS---------
T ss_pred HHHHHHHHhCCCcEEEeccccc---cch-------HHHHHH--HHHHHHHHhCCCccceechhhccCCCCC---------
Confidence 8889999999998877753221 111 000000 0011111 11114543 667655431
Q ss_pred HHHHHHHHHHHHHhhhhcCCCcEEEEecCCCCCCCC---CChhHHHHHHHHHHHHHHHHHhcCCCcccceeeeeccCCCc
Q 014151 308 LKFVTKWMLSHIEDGDKELNKPVFFTEYGLSNLIKG---FEPSLRDKLYKTILDIVYKSAKRKRSGAGALIWQLFVEGME 384 (430)
Q Consensus 308 ~~~~~~~l~~~~~~a~~~~gkPv~v~EfG~~~~~~~---~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~~~~ 384 (430)
...+...++.... .|+||.|+|+.+...... ..+..++++|+.++..+.+.... .+.|..+|.+.+. .
T Consensus 219 ----~~~i~~~l~~~~~-~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~--~v~git~Wg~~D~--~ 289 (320)
T PF00331_consen 219 ----PEQIWNALDRFAS-LGLPIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPA--AVEGITWWGFTDG--Y 289 (320)
T ss_dssp ----HHHHHHHHHHHHT-TTSEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHC--TEEEEEESSSBTT--G
T ss_pred ----HHHHHHHHHHHHH-cCCceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCCcc--CCCEEEEECCCCC--C
Confidence 1123344444443 899999999999887532 11456778888777766654111 6999999999986 4
Q ss_pred cCC
Q 014151 385 EYN 387 (430)
Q Consensus 385 ~~~ 387 (430)
+|-
T Consensus 290 sW~ 292 (320)
T PF00331_consen 290 SWR 292 (320)
T ss_dssp STT
T ss_pred ccc
Confidence 563
No 34
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.81 E-value=1.3e-07 Score=98.97 Aligned_cols=274 Identities=17% Similarity=0.244 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHH-HcCCCEEEEcc-ccCCCCCcc-c-cCCC--CCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCC
Q 014151 76 RARVGAMLQAGA-KMGLTVCRTWA-FNDGGYNSL-Q-ISPG--QFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGG 149 (430)
Q Consensus 76 ~~~~~~~~~~~~-~~G~n~vR~~~-~~~g~~~~~-~-~~pg--~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg 149 (430)
.+.++..+..++ +.|+..||+|. |++. -... + ...| .|| |..+|.++|...++||++.+.|--
T Consensus 38 ~~~~q~~l~~~~~~~gf~yvR~h~l~~dd-m~~~~~~~~~~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~f------- 106 (486)
T PF01229_consen 38 RADWQEQLRELQEELGFRYVRFHGLFSDD-MMVYSESDEDGIPPYN---FTYLDQILDFLLENGLKPFVELGF------- 106 (486)
T ss_dssp BHHHHHHHHHHHCCS--SEEEES-TTSTT-TT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S-------
T ss_pred hHHHHHHHHHHHhccCceEEEEEeeccCc-hhhccccccCCCCcCC---hHHHHHHHHHHHHcCCEEEEEEEe-------
Confidence 466777777776 78999999975 4432 1111 1 1222 266 899999999999999999998731
Q ss_pred cchhhhhhhhhCCCCCCCCCCCC-----CCHHHHHHH----HHHHHHHHhccCCcccccccCCC-ceeEEeecCCCCCCC
Q 014151 150 KTQYVNWAWEEGIGISSSNDSFF-----FDPSIHKYF----KHYVKTVLTRKNTITGVEYRNDP-TIFAWELINEPRCMS 219 (430)
Q Consensus 150 ~~~y~~W~~~~G~~~~~~~~~f~-----~d~~~~~~~----~~~~~~lv~R~n~~tg~~yk~~p-~I~~wel~NEp~~~~ 219 (430)
+ |.+... + ....|+ .-|+-.+.+ +.+++++++| |+.+. .-.-||++|||+...
T Consensus 107 ~---p~~~~~-~-----~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~R--------YG~~ev~~W~fEiWNEPd~~~ 169 (486)
T PF01229_consen 107 M---PMALAS-G-----YQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDR--------YGIEEVSTWYFEIWNEPDLKD 169 (486)
T ss_dssp B----GGGBS-S-------EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHH--------HHHHHHTTSEEEESS-TTSTT
T ss_pred c---hhhhcC-C-----CCccccccCCcCCcccHHHHHHHHHHHHHHHHhh--------cCCccccceeEEeCcCCCccc
Confidence 1 111100 0 001111 112333444 4555555555 65321 123479999999753
Q ss_pred C---CChHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCccchhhccCcchhhccCCCCcceEEeeecCC
Q 014151 220 D---PSGDTLQDWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPEMWASALGSDFIRNSNNDNIDFASVHIYPD 296 (430)
Q Consensus 220 ~---~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~w~~~~g~df~~~~~~~~iD~~s~H~Y~~ 296 (430)
. ...+.+.+.++..+.+||+++|+..|. +.++.. .. ..|-. ...+|.+... -.+||+|+|.|+.
T Consensus 170 f~~~~~~~ey~~ly~~~~~~iK~~~p~~~vG--Gp~~~~-~~--------~~~~~-~~l~~~~~~~-~~~DfiS~H~y~~ 236 (486)
T PF01229_consen 170 FWWDGTPEEYFELYDATARAIKAVDPELKVG--GPAFAW-AY--------DEWCE-DFLEFCKGNN-CPLDFISFHSYGT 236 (486)
T ss_dssp TSGGG-HHHHHHHHHHHHHHHHHH-TTSEEE--EEEEET-T---------THHHH-HHHHHHHHCT----SEEEEEEE-B
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHhCCCCccc--Cccccc-cH--------HHHHH-HHHHHHhcCC-CCCCEEEEEeccc
Confidence 2 124567788899999999999998763 222110 00 12221 1122333222 4589999999995
Q ss_pred CCCCC--cchhhhHHHHHH---HHHH---HHHhhhhcCCCcEEEEecCCCCCCCCC--ChhHHHHHHHHHHHHHHHHHhc
Q 014151 297 HWFHD--LEFEDDLKFVTK---WMLS---HIEDGDKELNKPVFFTEYGLSNLIKGF--EPSLRDKLYKTILDIVYKSAKR 366 (430)
Q Consensus 297 ~w~~~--~~~~~~~~~~~~---~l~~---~~~~a~~~~gkPv~v~EfG~~~~~~~~--~~~~r~~~~~~~~~~~~~~~~~ 366 (430)
..... ............ -+.. .+.... ..++|+.++||......... +...+.+|+-. .++++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~p~~~~~~tE~n~~~~~~~~~~dt~~~aA~i~k---~lL~~~-- 310 (486)
T PF01229_consen 237 DSAEDINENMYERIEDSRRLFPELKETRPIINDEA-DPNLPLYITEWNASISPRNPQHDTCFKAAYIAK---NLLSND-- 310 (486)
T ss_dssp ESESE-SS-EEEEB--HHHHHHHHHHHHHHHHTSS-STT--EEEEEEES-SSTT-GGGGSHHHHHHHHH----HHHHG--
T ss_pred ccccccchhHHhhhhhHHHHHHHHHHHHHHHhhcc-CCCCceeecccccccCCCcchhccccchhhHHH---HHHHhh--
Confidence 42110 000001111111 1111 112212 25789999999987654211 11234444322 123332
Q ss_pred CCCcccceeeeeccCC----C--ccCCCCceEEcCC
Q 014151 367 KRSGAGALIWQLFVEG----M--EEYNDDFGIVPWE 396 (430)
Q Consensus 367 ~~~~~G~~~W~~~~~~----~--~~~~dg~~i~~~~ 396 (430)
+....+..+|.+.+.- . .....||++....
T Consensus 311 ~~~l~~~sywt~sD~Fee~~~~~~pf~ggfGLlt~~ 346 (486)
T PF01229_consen 311 GAFLDSFSYWTFSDRFEENGTPRKPFHGGFGLLTKL 346 (486)
T ss_dssp GGT-SEEEES-SBS---TTSS-SSSSSS-S-SEECC
T ss_pred hhhhhhhhccchhhhhhccCCCCCceecchhhhhcc
Confidence 1124567889998631 1 1234788877654
No 35
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=8.3e-08 Score=97.43 Aligned_cols=118 Identities=17% Similarity=0.260 Sum_probs=88.2
Q ss_pred EEECCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHH
Q 014151 49 FMLDGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVE 128 (430)
Q Consensus 49 f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~ 128 (430)
|.+||.|+++.|.|-+-..... +..+-+.++-.|+..++.|+|++|+|.- |.|.. |++.+.
T Consensus 330 fkin~~pvflkg~nwip~s~f~-dr~t~~~~~~LL~Sv~e~~MN~lRVWGG------------GvYEs------d~FY~l 390 (867)
T KOG2230|consen 330 FKINDEPVFLKGTNWIPVSMFR-DRENIAKTEFLLDSVAEVGMNMLRVWGG------------GVYES------DYFYQL 390 (867)
T ss_pred EEEcCcEEEeecCCccChHHHH-hhHHHHHHHHHHHHHHHhCcceEEEecC------------ccccc------hhHHHH
Confidence 4469999999999933211111 2235678889999999999999999862 33432 577899
Q ss_pred HHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeE
Q 014151 129 ARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFA 208 (430)
Q Consensus 129 A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~ 208 (430)
|++.||.| |+++ ..++ .-+-+|.+.....++.+++-+.| .+.||+|+.
T Consensus 391 ad~lGilV-------WQD~-------MFAC----------AlYPt~~eFl~sv~eEV~yn~~R--------ls~HpSviI 438 (867)
T KOG2230|consen 391 ADSLGILV-------WQDM-------MFAC----------ALYPTNDEFLSSVREEVRYNAMR--------LSHHPSVII 438 (867)
T ss_pred hhhcccee-------hhhh-------HHHh----------hcccCcHHHHHHHHHHHHHHHHh--------hccCCeEEE
Confidence 99999988 7653 1222 11236778888889999999999 999999999
Q ss_pred EeecCCCCC
Q 014151 209 WELINEPRC 217 (430)
Q Consensus 209 wel~NEp~~ 217 (430)
|.--||-+.
T Consensus 439 fsgNNENEa 447 (867)
T KOG2230|consen 439 FSGNNENEA 447 (867)
T ss_pred EeCCCccHH
Confidence 999999764
No 36
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.61 E-value=2.5e-06 Score=82.07 Aligned_cols=116 Identities=23% Similarity=0.442 Sum_probs=82.6
Q ss_pred CCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEE-eccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHH
Q 014151 103 GYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLL-SLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYF 181 (430)
Q Consensus 103 ~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil-~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~ 181 (430)
-|..+++++|.|+ |+.=|++++-|++|||.+-- +|. |.. +.++|.... + ..-+...+.+
T Consensus 68 Kwe~i~p~~G~f~---Fe~AD~ia~FAr~h~m~lhGHtLv--W~~-----q~P~W~~~~---------e-~~~~~~~~~~ 127 (345)
T COG3693 68 KWEAIEPERGRFN---FEAADAIANFARKHNMPLHGHTLV--WHS-----QVPDWLFGD---------E-LSKEALAKMV 127 (345)
T ss_pred ccccccCCCCccC---ccchHHHHHHHHHcCCeeccceee--ecc-----cCCchhhcc---------c-cChHHHHHHH
Confidence 3778889999998 77789999999999997732 121 521 446776321 0 2346789999
Q ss_pred HHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCCC-------ChHHHHHHHHHHHHHHHhcCCCCEEEE
Q 014151 182 KHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSDP-------SGDTLQDWIDEMSAFVKSIDKKHLVTV 248 (430)
Q Consensus 182 ~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~-------~~~~~~~w~~~~~~~Ir~~dp~~lV~~ 248 (430)
+++|..++.| ||+. +.+|++.|||-..... +.-.-.+|++......|+.||+.-..+
T Consensus 128 e~hI~tV~~r--------Ykg~--~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 128 EEHIKTVVGR--------YKGS--VASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHh--------ccCc--eeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 9999999999 9996 9999999999763210 001123456667777899999865554
No 37
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=98.49 E-value=4.9e-06 Score=74.48 Aligned_cols=141 Identities=18% Similarity=0.312 Sum_probs=96.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEE-ccccCC-C-CCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCC
Q 014151 73 DYSRARVGAMLQAGAKMGLTVCRT-WAFNDG-G-YNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGG 149 (430)
Q Consensus 73 ~~~~~~~~~~~~~~~~~G~n~vR~-~~~~~g-~-~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg 149 (430)
.++.++|+++|+.|+++|+++|=+ |.-..+ . ++. +-.++.+....-+.|+.++++|+++||+|.+.|...
T Consensus 16 ~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps-~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~------ 88 (166)
T PF14488_consen 16 NWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPS-KLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD------ 88 (166)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCc-cccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC------
Confidence 467899999999999999998854 221111 0 111 111333444455789999999999999999988531
Q ss_pred cchhhhhhhhhCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCCCChHHHHH
Q 014151 150 KTQYVNWAWEEGIGISSSNDSFFFDPS-IHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSDPSGDTLQD 228 (430)
Q Consensus 150 ~~~y~~W~~~~G~~~~~~~~~f~~d~~-~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~~ 228 (430)
+.|... .|++ ..+.-+..++++.++ |++||++-+|=|-.|+..... ...+
T Consensus 89 ----~~~w~~-------------~~~~~~~~~~~~v~~el~~~--------yg~h~sf~GWYip~E~~~~~~----~~~~ 139 (166)
T PF14488_consen 89 ----PDYWDQ-------------GDLDWEAERNKQVADELWQR--------YGHHPSFYGWYIPYEIDDYNW----NAPE 139 (166)
T ss_pred ----chhhhc-------------cCHHHHHHHHHHHHHHHHHH--------HcCCCCCceEEEecccCCccc----chHH
Confidence 112110 1221 222334577778888 999999999999999987542 2345
Q ss_pred HHHHHHHHHHhcCCCCEEEEc
Q 014151 229 WIDEMSAFVKSIDKKHLVTVG 249 (430)
Q Consensus 229 w~~~~~~~Ir~~dp~~lV~~G 249 (430)
..+.+..++|++.|+.+|++.
T Consensus 140 ~~~~l~~~lk~~s~~~Pv~IS 160 (166)
T PF14488_consen 140 RFALLGKYLKQISPGKPVMIS 160 (166)
T ss_pred HHHHHHHHHHHhCCCCCeEEe
Confidence 568888999999999999874
No 38
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=98.45 E-value=4.5e-06 Score=79.31 Aligned_cols=138 Identities=17% Similarity=0.196 Sum_probs=76.4
Q ss_pred EeecCCCCCCCC--CChHHHHHHHHHHHHHHHhcCCCCEEEEccCCc-cCCC-CCCCcccCccchhhccCcchhhccC-C
Q 014151 209 WELINEPRCMSD--PSGDTLQDWIDEMSAFVKSIDKKHLVTVGLEGF-YGPK-SPKRLTVNPEMWASALGSDFIRNSN-N 283 (430)
Q Consensus 209 wel~NEp~~~~~--~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~-~~~~-~~~~~~~np~~w~~~~g~df~~~~~-~ 283 (430)
+..+|||+.... .+++...+...+..+.+|. +...|. +... +... .+ ....|-. +|..... .
T Consensus 69 ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~--~~~~l~--sPa~~~~~~~~~-----~g~~Wl~----~F~~~~~~~ 135 (239)
T PF11790_consen 69 LLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS--PGVKLG--SPAVAFTNGGTP-----GGLDWLS----QFLSACARG 135 (239)
T ss_pred eeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc--CCcEEE--CCeecccCCCCC-----CccHHHH----HHHHhcccC
Confidence 667899998652 2344444434454455663 443322 1111 0000 00 1123542 4555443 4
Q ss_pred CCcceEEeeecCCCCCCCcchhhhHHHHHHHHHHHHHhhhhcCCCcEEEEecCCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 014151 284 DNIDFASVHIYPDHWFHDLEFEDDLKFVTKWMLSHIEDGDKELNKPVFFTEYGLSNLIKGFEPSLRDKLYKTILDIVYKS 363 (430)
Q Consensus 284 ~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~a~~~~gkPv~v~EfG~~~~~~~~~~~~r~~~~~~~~~~~~~~ 363 (430)
..+||+++|.|... . .- +..+++...+..+|||+|+|||........+++.+.+++++++..+.+.
T Consensus 136 ~~~D~iavH~Y~~~------~----~~----~~~~i~~~~~~~~kPIWITEf~~~~~~~~~~~~~~~~fl~~~~~~ld~~ 201 (239)
T PF11790_consen 136 CRVDFIAVHWYGGD------A----DD----FKDYIDDLHNRYGKPIWITEFGCWNGGSQGSDEQQASFLRQALPWLDSQ 201 (239)
T ss_pred CCccEEEEecCCcC------H----HH----HHHHHHHHHHHhCCCEEEEeecccCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 58999999999322 1 11 2333444433488999999999876433446788899999888766442
Q ss_pred HhcCCCcccceeeee
Q 014151 364 AKRKRSGAGALIWQL 378 (430)
Q Consensus 364 ~~~~~~~~G~~~W~~ 378 (430)
..+...+|--
T Consensus 202 -----~~VeryawF~ 211 (239)
T PF11790_consen 202 -----PYVERYAWFG 211 (239)
T ss_pred -----CCeeEEEecc
Confidence 3444555544
No 39
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=98.44 E-value=3.3e-05 Score=72.50 Aligned_cols=205 Identities=20% Similarity=0.245 Sum_probs=125.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcch
Q 014151 73 DYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQ 152 (430)
Q Consensus 73 ~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~ 152 (430)
+.+.+++..||+.++..+. .||++. +| -..|..++.+|.+.|++|++.+ |. +
T Consensus 59 CKSa~~~~sDLe~l~~~t~-~IR~Y~-sD-----------------Cn~le~v~pAa~~~g~kv~lGi---w~--t---- 110 (305)
T COG5309 59 CKSADQVASDLELLASYTH-SIRTYG-SD-----------------CNTLENVLPAAEASGFKVFLGI---WP--T---- 110 (305)
T ss_pred CcCHHHHHhHHHHhccCCc-eEEEee-cc-----------------chhhhhhHHHHHhcCceEEEEE---ee--c----
Confidence 4578999999999999988 999976 33 1234578899999999999876 31 1
Q ss_pred hhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCCCChHHHHHHHHH
Q 014151 153 YVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSDPSGDTLQDWIDE 232 (430)
Q Consensus 153 y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~ 232 (430)
| +......+-+..-..- +..-+.|....++||.-...+.....+.+.+..
T Consensus 111 ---------------------d-d~~~~~~~til~ay~~--------~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~ 160 (305)
T COG5309 111 ---------------------D-DIHDAVEKTILSAYLP--------YNGWDDVTTVTVGNEALNRNDLTASQLIEYIDD 160 (305)
T ss_pred ---------------------c-chhhhHHHHHHHHHhc--------cCCCCceEEEEechhhhhcCCCCHHHHHHHHHH
Confidence 1 0111112122222223 667788999999999877666677899999999
Q ss_pred HHHHHHhcCCCCEEEEccCCccCCCCCCCcccCccchhhccCcchhhccCCCCcceEEeeecCCCCCCCcchhhhHHHHH
Q 014151 233 MSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPEMWASALGSDFIRNSNNDNIDFASVHIYPDHWFHDLEFEDDLKFVT 312 (430)
Q Consensus 233 ~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~w~~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~ 312 (430)
...++++.+-+-+|++- +.+ .. ...||. .+...||+..|.-|. |.....-...-.|+.
T Consensus 161 vrsav~~agy~gpV~T~-dsw-~~-----~~~np~--------------l~~~SDfia~N~~aY-wd~~~~a~~~~~f~~ 218 (305)
T COG5309 161 VRSAVKEAGYDGPVTTV-DSW-NV-----VINNPE--------------LCQASDFIAANAHAY-WDGQTVANAAGTFLL 218 (305)
T ss_pred HHHHHHhcCCCCceeec-ccc-ee-----eeCChH--------------Hhhhhhhhhcccchh-ccccchhhhhhHHHH
Confidence 99999988877777653 222 10 001221 134457766665443 332111111112221
Q ss_pred HHHHHHHHhhhhcCCCcEEEEecCCCCCCCCC-----ChhHHHHHHHHHHHH
Q 014151 313 KWMLSHIEDGDKELNKPVFFTEYGLSNLIKGF-----EPSLRDKLYKTILDI 359 (430)
Q Consensus 313 ~~l~~~~~~a~~~~gkPv~v~EfG~~~~~~~~-----~~~~r~~~~~~~~~~ 359 (430)
.-+ +.++.+. ...||++|+|-|++..+..+ +..++..+++.++..
T Consensus 219 ~q~-e~vqsa~-g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~ 268 (305)
T COG5309 219 EQL-ERVQSAC-GTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNA 268 (305)
T ss_pred HHH-HHHHHhc-CCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhh
Confidence 112 2233333 24599999999999886321 456777777766543
No 40
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=98.26 E-value=0.00017 Score=71.94 Aligned_cols=225 Identities=19% Similarity=0.217 Sum_probs=95.5
Q ss_pred HHcCCCEEEEcccc----CC-------CC---CccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcch
Q 014151 87 AKMGLTVCRTWAFN----DG-------GY---NSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQ 152 (430)
Q Consensus 87 ~~~G~n~vR~~~~~----~g-------~~---~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~ 152 (430)
+-+|++.+|.-+-. .+ .| +.+.+..|.||-+.=..=..++++|+++|+..++.+.+. .
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFSNS--P------ 128 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFEAFSNS--P------ 128 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EEEE-SS--S------
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEeecC--C------
Confidence 46899999985421 00 02 123345566763222333468999999999998866542 1
Q ss_pred hhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCC-ceeEEeecCCCCCCC---C-----CCh
Q 014151 153 YVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDP-TIFAWELINEPRCMS---D-----PSG 223 (430)
Q Consensus 153 y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p-~I~~wel~NEp~~~~---~-----~~~ 223 (430)
|-|....|...+.....---.++..+.|.+|+..++++ |+++- .|-..+-+|||...- . -+.
T Consensus 129 -P~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~--------~~~~GI~f~~IsP~NEP~~~W~~~~QEG~~~~~ 199 (384)
T PF14587_consen 129 -PWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKH--------YKKWGINFDYISPFNEPQWNWAGGSQEGCHFTN 199 (384)
T ss_dssp --GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHH--------HHCTT--EEEEE--S-TTS-GG--SS-B----H
T ss_pred -CHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHH--------HHhcCCccceeCCcCCCCCCCCCCCcCCCCCCH
Confidence 33443334322111111111256789999999999999 75443 456678999998651 0 134
Q ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCCC------CCCcccCc--cchhhccCcchhhccCCCCc-ceEEeeec
Q 014151 224 DTLQDWIDEMSAFVKSIDKKHLVTVGLEGFYGPKS------PKRLTVNP--EMWASALGSDFIRNSNNDNI-DFASVHIY 294 (430)
Q Consensus 224 ~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~------~~~~~~np--~~w~~~~g~df~~~~~~~~i-D~~s~H~Y 294 (430)
+...+.++.+.+.+++...+..|+++.++-+.... +++ .|. .-|. .....++.+ .++| .+++-|.|
T Consensus 200 ~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~~~~~l~~~~~~~~~r--~~~i~~ff~-~~s~~yi~~--l~~v~~~i~~HsY 274 (384)
T PF14587_consen 200 EEQADVIRALDKALKKRGLSTKISACEAGDWEYLYKTDKNDWGR--GNQIEAFFN-PDSSTYIGD--LPNVPNIISGHSY 274 (384)
T ss_dssp HHHHHHHHHHHHHHHHHT-S-EEEEEEESSGGGGS---S-TTS-----HHHHHHS-TTSTT--TT---TTEEEEEEE--T
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEecchhhHHHHhhccCCchhh--hhhHHhhcC-CCchhhhhc--cccchhheeeccc
Confidence 66788899999999998888878887655321111 000 000 0011 111222222 2333 47899999
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHHHhhhh-cCCCcEEEEecCCCCCC
Q 014151 295 PDHWFHDLEFEDDLKFVTKWMLSHIEDGDK-ELNKPVFFTEYGLSNLI 341 (430)
Q Consensus 295 ~~~w~~~~~~~~~~~~~~~~l~~~~~~a~~-~~gkPv~v~EfG~~~~~ 341 (430)
-.. .. . ..+.-.++-+.+ .+.+ ..+..++.+||+...+.
T Consensus 275 wt~---~~-~-~~l~~~R~~~~~---~~~~~~~~~~~wqtE~~il~~~ 314 (384)
T PF14587_consen 275 WTD---SP-W-DDLRDIRKQLAD---KLDKYSPGLKYWQTEYCILGDN 314 (384)
T ss_dssp T-S---SS-H-HHHHHHHHHHHH---HHHTTSS--EEEE----S----
T ss_pred ccC---CC-H-HHHHHHHHHHHH---HHHhhCcCCceeeeeeeeccCC
Confidence 543 21 1 112222222222 2233 13888999999998774
No 41
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.67 E-value=0.0043 Score=61.33 Aligned_cols=209 Identities=16% Similarity=0.296 Sum_probs=115.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCC--C-CccccC----CCC-CChHHHHHHHHHHHHHHHcCCEEEEecc-CC-c
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGG--Y-NSLQIS----PGQ-FDERVFKALDHVIVEARKNGVRLLLSLV-NN-L 144 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~--~-~~~~~~----pg~-~de~~l~~lD~~l~~A~~~Gi~vil~l~-~~-w 144 (430)
+++++++.++.++++|+|+|=+-+...|. | ..+.|. .|. .....++-|..+|++|+++||.|.-=+. .. .
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 68899999999999999988764433331 1 112211 111 1123577899999999999999975330 00 0
Q ss_pred ccCCC-cchhhhhhh--hhCCCCC---CCCCCCCC---CHHHHHHHHHHHHHHHhccCCcccccccCC---CceeEEee-
Q 014151 145 QAYGG-KTQYVNWAW--EEGIGIS---SSNDSFFF---DPSIHKYFKHYVKTVLTRKNTITGVEYRND---PTIFAWEL- 211 (430)
Q Consensus 145 ~~~gg-~~~y~~W~~--~~G~~~~---~~~~~f~~---d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~---p~I~~wel- 211 (430)
...+. ....+.|.. ..|.... ......|- .|++++...+.+++|+++-. +-|+++=+. |...+++.
T Consensus 97 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd-vDGIhlDdy~yp~~~~g~~~~ 175 (311)
T PF02638_consen 97 PDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD-VDGIHLDDYFYPPPSFGYDFP 175 (311)
T ss_pred CchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC-CCeEEecccccccccCCCCCc
Confidence 00000 122344532 1111110 11223343 47899999999999999943 556554321 11111110
Q ss_pred ---------cCCCCCCCCC------ChHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCccchhhccCcc
Q 014151 212 ---------INEPRCMSDP------SGDTLQDWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPEMWASALGSD 276 (430)
Q Consensus 212 ---------~NEp~~~~~~------~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~w~~~~g~d 276 (430)
..+|...... ..+.+..+++++.+.||+++|+..+++...|.++.+... .-+|
T Consensus 176 ~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~sisp~g~~~~~y~~------------~~qD 243 (311)
T PF02638_consen 176 DVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFSISPFGIWNSAYDD------------YYQD 243 (311)
T ss_pred cHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeecchhhhhhh------------eecc
Confidence 0001000000 134566678899999999999999988655544221110 0122
Q ss_pred hhhccCCCCcceEEeeecCC
Q 014151 277 FIRNSNNDNIDFASVHIYPD 296 (430)
Q Consensus 277 f~~~~~~~~iD~~s~H~Y~~ 296 (430)
...-+....||++..-.|-.
T Consensus 244 ~~~W~~~G~iD~i~Pq~Y~~ 263 (311)
T PF02638_consen 244 WRNWLKEGYIDYIVPQIYWS 263 (311)
T ss_pred HHHHHhcCCccEEEeeeccc
Confidence 22223446799999998854
No 42
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=97.50 E-value=0.013 Score=57.46 Aligned_cols=242 Identities=13% Similarity=0.153 Sum_probs=116.9
Q ss_pred HHHHHHHHHH-HHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhh
Q 014151 76 RARVGAMLQA-GAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYV 154 (430)
Q Consensus 76 ~~~~~~~~~~-~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~ 154 (430)
....+..|.. .-++|+..+|+.+-+...|. . |.+|.. .+.|- .-.-+..+|++|+-+. |.. |
T Consensus 64 aa~l~t~Fgng~~~lg~si~Rv~I~~ndfsl--~---g~~d~w-~kels-~Ak~~in~g~ivfASP---Wsp-------P 126 (433)
T COG5520 64 AAQLETLFGNGANQLGFSILRVPIDSNDFSL--G---GSADNW-YKELS-TAKSAINPGMIVFASP---WSP-------P 126 (433)
T ss_pred HHHHHHHhcCCccccCceEEEEEeccccccc--C---CCcchh-hhhcc-cchhhcCCCcEEEecC---CCC-------c
Confidence 4455555543 23689999999663211111 0 222211 00000 1122667899887654 542 3
Q ss_pred hhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCC-ceeEEeecCCCCCCCCC-----ChHHHHH
Q 014151 155 NWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDP-TIFAWELINEPRCMSDP-----SGDTLQD 228 (430)
Q Consensus 155 ~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p-~I~~wel~NEp~~~~~~-----~~~~~~~ 228 (430)
.|....+...+.+... --++....|.+++...|.. ++++. .+-+..+.|||.....- .++...+
T Consensus 127 a~Mktt~~~ngg~~g~--Lk~e~Ya~yA~~l~~fv~~--------m~~nGvnlyalSVQNEPd~~p~~d~~~wtpQe~~r 196 (433)
T COG5520 127 ASMKTTNNRNGGNAGR--LKYEKYADYADYLNDFVLE--------MKNNGVNLYALSVQNEPDYAPTYDWCWWTPQEELR 196 (433)
T ss_pred hhhhhccCcCCccccc--cchhHhHHHHHHHHHHHHH--------HHhCCCceeEEeeccCCcccCCCCcccccHHHHHH
Confidence 3443321111010001 1234555566666666665 66554 68889999999986321 1233333
Q ss_pred HHHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCccchhhccCcchhhccCCCCcceEEeeecCCCCCCCcchhhhH
Q 014151 229 WIDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPEMWASALGSDFIRNSNNDNIDFASVHIYPDHWFHDLEFEDDL 308 (430)
Q Consensus 229 w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~w~~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~ 308 (430)
+ |.++.+.+..+.-|.+- +.+. ..| .|+.. -+....+...+|++..|.|...-..- +
T Consensus 197 F---~~qyl~si~~~~rV~~p-es~~---------~~~-~~~dp---~lnDp~a~a~~~ilg~H~Ygg~v~~~---p--- 253 (433)
T COG5520 197 F---MRQYLASINAEMRVIIP-ESFK---------DLP-NMSDP---ILNDPKALANMDILGTHLYGGQVSDQ---P--- 253 (433)
T ss_pred H---HHHhhhhhccccEEecc-hhcc---------ccc-ccccc---cccCHhHhcccceeEeeecccccccc---h---
Confidence 3 33333333333333321 1111 111 11110 01111245689999999998652210 0
Q ss_pred HHHHHHHHHHHHhhhhcCCCcEEEEecCCCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCcccceeeeeccC
Q 014151 309 KFVTKWMLSHIEDGDKELNKPVFFTEYGLSNLIKGFEPSLRDKLYKTILDIVYKSAKRKRSGAGALIWQLFVE 381 (430)
Q Consensus 309 ~~~~~~l~~~~~~a~~~~gkPv~v~EfG~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~ 381 (430)
..+.... ..+|-|+++|.-....+++. ..| +.. .+...+.....++ +..|+..|.+.-+
T Consensus 254 --------~~lak~~-~~gKdlwmte~y~~esd~~s--~dr-~~~-~~~~hi~~gm~~g-g~~ayv~W~i~~~ 312 (433)
T COG5520 254 --------YPLAKQK-PAGKDLWMTECYPPESDPNS--ADR-EAL-HVALHIHIGMTEG-GFQAYVWWNIRLD 312 (433)
T ss_pred --------hhHhhCC-CcCCceEEeecccCCCCCCc--chH-HHH-HHHHHHHhhcccc-CccEEEEEEEeec
Confidence 0011122 25899999998776655432 233 222 2333444444554 7899999998653
No 43
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=97.49 E-value=0.01 Score=62.22 Aligned_cols=256 Identities=16% Similarity=0.167 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHcCCCEEEEcccc-CC---CCCccccCCC-----CCC--hHHHHHHHHHHHHHHHc--CCEEEEeccCCc
Q 014151 78 RVGAMLQAGAKMGLTVCRTWAFN-DG---GYNSLQISPG-----QFD--ERVFKALDHVIVEARKN--GVRLLLSLVNNL 144 (430)
Q Consensus 78 ~~~~~~~~~~~~G~n~vR~~~~~-~g---~~~~~~~~pg-----~~d--e~~l~~lD~~l~~A~~~--Gi~vil~l~~~w 144 (430)
.++..|. =.-+|++.+|+.+-+ |- .|. +-..|+ .|+ .+..+..=-+|..|.+. +|+++.+. |
T Consensus 102 ll~~~F~-~~G~g~s~~R~pIgssDfs~~~Yt-y~d~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSp---W 176 (496)
T PF02055_consen 102 LLRSLFS-EDGIGYSLLRVPIGSSDFSTRPYT-YDDVPGDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASP---W 176 (496)
T ss_dssp HHHHHHS-TTTT---EEEEEES--SSSSS----ST-STTHTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEE---S
T ss_pred HHHHHhh-cCCceEEEEEeeccCcCCcCCccc-ccCCCCCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEec---C
Confidence 3555555 256899999996632 21 111 111122 222 11111222355555443 58887664 6
Q ss_pred ccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCC-ceeEEeecCCCCCCC----
Q 014151 145 QAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDP-TIFAWELINEPRCMS---- 219 (430)
Q Consensus 145 ~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p-~I~~wel~NEp~~~~---- 219 (430)
.. |.|....+.-.+...-.=-..+++.+.|.+|+.+.++. |+.+- .|.+..+.|||....
T Consensus 177 Sp-------P~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~a--------Y~~~GI~i~aiT~QNEP~~~~~~~~ 241 (496)
T PF02055_consen 177 SP-------PAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQA--------YKKEGIPIWAITPQNEPDNGSDPNY 241 (496)
T ss_dssp ----------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHH--------HHCTT--ESEEESSSSCCGGGSTT-
T ss_pred CC-------CHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHH--------HHHCCCCeEEEeccCCCCCCCCCCC
Confidence 42 56776533211000000011357888899999898888 88775 688889999998521
Q ss_pred -CC----ChHHHHHHHHH-HHHHHHhcCC--CCEEEEccCCccCCCCCCCcccCccchhhccCcchhhccCCCCcceEEe
Q 014151 220 -DP----SGDTLQDWIDE-MSAFVKSIDK--KHLVTVGLEGFYGPKSPKRLTVNPEMWASALGSDFIRNSNNDNIDFASV 291 (430)
Q Consensus 220 -~~----~~~~~~~w~~~-~~~~Ir~~dp--~~lV~~G~~g~~~~~~~~~~~~np~~w~~~~g~df~~~~~~~~iD~~s~ 291 (430)
.+ .++..++|++. +..++++..+ +.-|.+..+.... .| .|....-.|. -+.+.+|-+.+
T Consensus 242 ~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~---------~~-~~~~~il~d~---~A~~yv~GiA~ 308 (496)
T PF02055_consen 242 PWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDN---------LP-DYADTILNDP---EAAKYVDGIAF 308 (496)
T ss_dssp SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGG---------TT-HHHHHHHTSH---HHHTTEEEEEE
T ss_pred CCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcc---------cc-hhhhhhhcCh---hhHhheeEEEE
Confidence 11 35778889886 8889998877 4444443221110 11 2332100011 13467999999
Q ss_pred eecCCCCCCCcchhhhHHHHHHHHHHHHHhhhhcCCCcEEEEecCCCCCCCC----CChhHHH-HHHHHHHHHHHHHHhc
Q 014151 292 HIYPDHWFHDLEFEDDLKFVTKWMLSHIEDGDKELNKPVFFTEYGLSNLIKG----FEPSLRD-KLYKTILDIVYKSAKR 366 (430)
Q Consensus 292 H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~a~~~~gkPv~v~EfG~~~~~~~----~~~~~r~-~~~~~~~~~~~~~~~~ 366 (430)
|.|.+. .. .. -|. +..++..+|.++.+|-.......+ ...=.|. .|...++ .....
T Consensus 309 HwY~g~---~~--~~-------~l~---~~h~~~P~k~l~~TE~~~g~~~~~~~~~~g~w~~~~~y~~~ii----~~lnn 369 (496)
T PF02055_consen 309 HWYGGD---PS--PQ-------ALD---QVHNKFPDKFLLFTEACCGSWNWDTSVDLGSWDRAERYAHDII----GDLNN 369 (496)
T ss_dssp EETTCS----H--CH-------HHH---HHHHHSTTSEEEEEEEESS-STTS-SS-TTHHHHHHHHHHHHH----HHHHT
T ss_pred ECCCCC---ch--hh-------HHH---HHHHHCCCcEEEeeccccCCCCcccccccccHHHHHHHHHHHH----HHHHh
Confidence 999763 10 00 011 112224789999999865543211 1111232 2323333 33333
Q ss_pred CCCcccceeeeeccC--CCccCC
Q 014151 367 KRSGAGALIWQLFVE--GMEEYN 387 (430)
Q Consensus 367 ~~~~~G~~~W~~~~~--~~~~~~ 387 (430)
...|++.|.+.-+ +-+.|.
T Consensus 370 --~~~gw~~WNl~LD~~GGP~~~ 390 (496)
T PF02055_consen 370 --WVSGWIDWNLALDENGGPNWV 390 (496)
T ss_dssp --TEEEEEEEESEBETTS---TT
T ss_pred --hceeeeeeeeecCCCCCCccc
Confidence 4789999998643 224554
No 44
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=97.37 E-value=7.8e-06 Score=82.21 Aligned_cols=320 Identities=24% Similarity=0.352 Sum_probs=168.7
Q ss_pred CCCCCcEEEeCCeEE-ECCeE------EEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEcccc--C--C--
Q 014151 36 EPEMGFVTRNGTHFM-LDGKA------LYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFN--D--G-- 102 (430)
Q Consensus 36 ~~~~gfv~~~g~~f~-~~G~~------~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~--~--g-- 102 (430)
-+..+||.++..|+. +||++ ...+|.| ...++..++.+..+++.++++.+-. + |
T Consensus 32 le~a~~vg~k~lR~fiLDgEdc~d~~G~~na~s~-------------~~y~~~fla~a~~l~lkvlitlivg~~hmgg~N 98 (587)
T COG3934 32 LEPAGFVGVKDLRLFILDGEDCRDKEGYRNAGSN-------------VWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTN 98 (587)
T ss_pred cccccCccceeEEEEEecCcchhhhhceeccccc-------------HHHHHHHhhhcccCcceEEEEEeecccccCcce
Confidence 356688999877755 79999 4444544 4566777888889999988875422 1 1
Q ss_pred ---CCCccc-cCCCCCCh-----------HHHH--HHHHHHHHHHHcCCEE---EEeccCCcccCCCcchhhhhhhh---
Q 014151 103 ---GYNSLQ-ISPGQFDE-----------RVFK--ALDHVIVEARKNGVRL---LLSLVNNLQAYGGKTQYVNWAWE--- 159 (430)
Q Consensus 103 ---~~~~~~-~~pg~~de-----------~~l~--~lD~~l~~A~~~Gi~v---il~l~~~w~~~gg~~~y~~W~~~--- 159 (430)
.|..-| ++.-.||+ ..+. ++|-.|..-...+.-+ .....+.|...+++..|.+|..+
T Consensus 99 w~Ipwag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hl 178 (587)
T COG3934 99 WRIPWAGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHL 178 (587)
T ss_pred eEeecCCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCe
Confidence 021111 11112333 2222 2333333333333311 12233346666778888888753
Q ss_pred --hCCCCC------CCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCCC-----ChHHH
Q 014151 160 --EGIGIS------SSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSDP-----SGDTL 226 (430)
Q Consensus 160 --~G~~~~------~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~-----~~~~~ 226 (430)
.|.+.. +....++.|-..-..|..|...++.|+.+.+|.+|.+.|++++|...|+++..... ..+..
T Consensus 179 vsvGD~~sp~~~~~pyN~r~~vDya~~hLY~hyd~sl~~r~s~~yg~~~l~i~~~~g~~pV~leefGfsta~g~e~s~ay 258 (587)
T COG3934 179 VSVGDPASPWPQYAPYNARFYVDYAANHLYRHYDTSLVSRVSTVYGKPYLDIPTIMGWQPVNLEEFGFSTAFGQENSPAY 258 (587)
T ss_pred eecCCcCCcccccCCcccceeeccccchhhhhccCChhheeeeeecchhhccchhcccceeeccccCCcccccccccchh
Confidence 132221 11223345555566676777778899999999999999999999999999875431 22445
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEccCCcc-CCCCCCCcccCccchhhccCcch--hhccCCCCcceEEeeecCCCCCC--C
Q 014151 227 QDWIDEMSAFVKSIDKKHLVTVGLEGFY-GPKSPKRLTVNPEMWASALGSDF--IRNSNNDNIDFASVHIYPDHWFH--D 301 (430)
Q Consensus 227 ~~w~~~~~~~Ir~~dp~~lV~~G~~g~~-~~~~~~~~~~np~~w~~~~g~df--~~~~~~~~iD~~s~H~Y~~~w~~--~ 301 (430)
..|..-. +---.-..||-.= .++- +.++ .|..|.. .+..| +++...+.+|+-.+|..+..|.. -
T Consensus 259 fiw~~la---l~~ggdGaLiwcl-sdf~~gsdd------~ey~w~p-~el~fgiIradgpek~~a~~~~~fsn~~kdI~~ 327 (587)
T COG3934 259 FIWIRLA---LDTGGDGALIWCL-SDFHLGSDD------SEYTWGP-MELEFGIIRADGPEKIDAMTLHIFSNNWKDISM 327 (587)
T ss_pred hhhhhhH---HhhcCCceEEEEe-cCCccCCCC------CCCcccc-ccceeeeecCCCchhhhHHHHHHhccccceeee
Confidence 5565441 1111112333221 1111 2121 2333421 11122 22233344555566665554431 0
Q ss_pred cch-----hhhHHHHHHHHHHHHHhhhhcCCCcEEEEecCCCCCC----CCCChhHHHHHHHHHHHHHHHHHhcCCCccc
Q 014151 302 LEF-----EDDLKFVTKWMLSHIEDGDKELNKPVFFTEYGLSNLI----KGFEPSLRDKLYKTILDIVYKSAKRKRSGAG 372 (430)
Q Consensus 302 ~~~-----~~~~~~~~~~l~~~~~~a~~~~gkPv~v~EfG~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G 372 (430)
+++ +...---+.++++++..+.+ ..+|+.+.+++..-.. ++.+.-.|+..++++++.-..-+..+++..|
T Consensus 328 ~Sfq~p~~e~~eikp~~~va~~~fv~e~-~~~~Lf~rv~nl~f~~~~~~~gqpt~~rd~d~~~~l~d~kllmipsgpt~g 406 (587)
T COG3934 328 CSFQPPTYEAGEIKPRDYVAQHIFVAER-LNKPLFIRVFNLIFDGRQFTPGQPTTYRDRDYKTMLDDAKLLMIPSGPTAG 406 (587)
T ss_pred ecccCcccccceecchHhhhhceecHhh-hccchhhhcchhHhhhhhhcCCCceEEeccchhhcCCchhheeecCCcccc
Confidence 110 10000112235667667776 8999999999976543 2333445566666544322222223456778
Q ss_pred ceeeeecc
Q 014151 373 ALIWQLFV 380 (430)
Q Consensus 373 ~~~W~~~~ 380 (430)
..+|.+..
T Consensus 407 ~Ttw~~ll 414 (587)
T COG3934 407 VTTWAWLL 414 (587)
T ss_pred hhHHHHHh
Confidence 88887754
No 45
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=97.00 E-value=0.00025 Score=69.62 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccC
Q 014151 119 FKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 119 l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
.++.|.+.+-|++-|++||+.|..
T Consensus 108 ~~rwd~l~~F~~~tG~~liFgLNA 131 (319)
T PF03662_consen 108 MSRWDELNNFAQKTGLKLIFGLNA 131 (319)
T ss_dssp ----HHHHHHHHHHT-EEEEEE-T
T ss_pred hhHHHHHHHHHHHhCCEEEEEecc
Confidence 468899999999999999999853
No 46
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.79 E-value=0.36 Score=47.67 Aligned_cols=205 Identities=17% Similarity=0.261 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCC---CCc---cccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCC
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGG---YNS---LQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYG 148 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~---~~~---~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~g 148 (430)
+++.+++.++.+++.|+|+|=+=+=.+.+ ++. .....|.. ......+..+++.++++|||+|--+..+=+..-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~-~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~l 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAV-KPYIKDLKALVKKLKEHGIYPIARIVVFKDPVL 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccc-cccccCHHHHHHHHHHCCCEEEEEEEEecChHH
Confidence 56889999999999999999872222211 210 11111211 122456889999999999999874432211110
Q ss_pred Ccchhhhhhhh--hCCCCCCCCCCCCCC---HHHHHHHHHHHHHHHhccCCcccccccC--CCceeEEeecCCCCCCCCC
Q 014151 149 GKTQYVNWAWE--EGIGISSSNDSFFFD---PSIHKYFKHYVKTVLTRKNTITGVEYRN--DPTIFAWELINEPRCMSDP 221 (430)
Q Consensus 149 g~~~y~~W~~~--~G~~~~~~~~~f~~d---~~~~~~~~~~~~~lv~R~n~~tg~~yk~--~p~I~~wel~NEp~~~~~~ 221 (430)
. ...+.|+.. .|..-......-|.| +++++...+..+++++. .+..++|-. -|.- ...+........
T Consensus 90 a-~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~--GFdEIqfDYIRFP~~---~~~~~l~y~~~~ 163 (316)
T PF13200_consen 90 A-EAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL--GFDEIQFDYIRFPDE---GRLSGLDYSEND 163 (316)
T ss_pred h-hhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc--CCCEEEeeeeecCCC---CcccccccCCCC
Confidence 0 112444431 111110111122555 46666667777777665 333333311 1220 000111111000
Q ss_pred ----ChHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCccchhhccCcchhhccCCCCcceEEeeecCCC
Q 014151 222 ----SGDTLQDWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPEMWASALGSDFIRNSNNDNIDFASVHIYPDH 297 (430)
Q Consensus 222 ----~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~w~~~~g~df~~~~~~~~iD~~s~H~Y~~~ 297 (430)
..+.+.++++.+.+.++..+ ..|++-. ||.... ++.. ..-|+++.. -.+.+|++|.-.||.+
T Consensus 164 ~~~~r~~aI~~Fl~~a~~~l~~~~--v~vSaDV---fG~~~~-----~~~~--~~iGQ~~~~--~a~~vD~IsPMiYPSh 229 (316)
T PF13200_consen 164 TEESRVDAITDFLAYAREELHPYG--VPVSADV---FGYVAW-----SPDD--MGIGQDFEK--IAEYVDYISPMIYPSH 229 (316)
T ss_pred CcchHHHHHHHHHHHHHHHHhHcC--CCEEEEe---cccccc-----cCCC--CCcCCCHHH--HhhhCCEEEecccccc
Confidence 23677888888888887664 4455432 221110 0000 124667654 3578999999999999
Q ss_pred CCC
Q 014151 298 WFH 300 (430)
Q Consensus 298 w~~ 300 (430)
|.+
T Consensus 230 ~~~ 232 (316)
T PF13200_consen 230 YGP 232 (316)
T ss_pred cCc
Confidence 875
No 47
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.41 E-value=0.096 Score=53.33 Aligned_cols=203 Identities=17% Similarity=0.277 Sum_probs=110.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCC--CC-cccc----CCCCC-ChHHHHHHHHHHHHHHHcCCEEEEeccCCcc
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRTWAFNDGG--YN-SLQI----SPGQF-DERVFKALDHVIVEARKNGVRLLLSLVNNLQ 145 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~--~~-~~~~----~pg~~-de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~ 145 (430)
.++.++.+.++.++++|+|+|=+=+..+|. |+ .+.| .||.. -+.+++-|-.+|++|+++||+|+. |-
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~a-----Wf 135 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHA-----WF 135 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeee-----ch
Confidence 478999999999999999998764433331 11 1111 13322 245567788999999999999976 33
Q ss_pred cCCCc--------chhhhhhhhhC-CCCC--CCC--CCCCCC---HHHHHHHHHHHHHHHhccCCcccccccCCCceeEE
Q 014151 146 AYGGK--------TQYVNWAWEEG-IGIS--SSN--DSFFFD---PSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAW 209 (430)
Q Consensus 146 ~~gg~--------~~y~~W~~~~G-~~~~--~~~--~~f~~d---~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~w 209 (430)
.++.+ ..++.|..... .... ... ..+|-| |++++.+.+.+.++|++- ..-|+++-| ++.
T Consensus 136 ~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y-dvDGIQfDd---~fy- 210 (418)
T COG1649 136 NPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY-DVDGIQFDD---YFY- 210 (418)
T ss_pred hhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC-CCCceecce---eec-
Confidence 32221 12233332210 0000 111 355655 689999999999999981 112222222 222
Q ss_pred eecCCCCCCCC--------------CCh--------HHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCcc
Q 014151 210 ELINEPRCMSD--------------PSG--------DTLQDWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPE 267 (430)
Q Consensus 210 el~NEp~~~~~--------------~~~--------~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~ 267 (430)
.-.+-..... .++ +.+.+++++++..||++.|+..+++... +...++...++
T Consensus 211 -~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~svsp~---n~~~~~~f~y~-- 284 (418)
T COG1649 211 -YPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKPNVKFSVSPF---NPLGSATFAYD-- 284 (418)
T ss_pred -ccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEEEEccC---CCCCccceehh--
Confidence 1111111100 012 2334457789999999999999988531 10000000000
Q ss_pred chhhccCcchhhccCCCCcceEEeeecCC
Q 014151 268 MWASALGSDFIRNSNNDNIDFASVHIYPD 296 (430)
Q Consensus 268 ~w~~~~g~df~~~~~~~~iD~~s~H~Y~~ 296 (430)
...+|+..-.....||++-.-.|-.
T Consensus 285 ----~~~qDw~~Wv~~G~iD~l~pqvYr~ 309 (418)
T COG1649 285 ----YFLQDWRRWVRQGLIDELAPQVYRT 309 (418)
T ss_pred ----hhhhhHHHHHHcccHhhhhhhhhcc
Confidence 0112333333467889888888854
No 48
>PRK10785 maltodextrin glucosidase; Provisional
Probab=96.16 E-value=0.084 Score=56.99 Aligned_cols=159 Identities=16% Similarity=0.214 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCC-CCCcc------ccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccC
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDG-GYNSL------QISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAY 147 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g-~~~~~------~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~ 147 (430)
+-.-+.+-|+.++++|+|+|=+-.+.+. +.... +..| .| -..+.|.+++++|+++||+||+++.-+ ..
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp-~~--Gt~~df~~Lv~~aH~rGikVilD~V~N--H~ 251 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDP-QL--GGDAALLRLRHATQQRGMRLVLDGVFN--HT 251 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCc-cc--CCHHHHHHHHHHHHHCCCEEEEEECCC--cC
Confidence 5567888899999999999988432211 11000 1111 01 124678999999999999999987532 11
Q ss_pred CCc-------------------chhhhhhhh--hCCCCC----CCCCC-CCCCHHHHHHHHHHHHHHHhccCCccccccc
Q 014151 148 GGK-------------------TQYVNWAWE--EGIGIS----SSNDS-FFFDPSIHKYFKHYVKTVLTRKNTITGVEYR 201 (430)
Q Consensus 148 gg~-------------------~~y~~W~~~--~G~~~~----~~~~~-f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk 201 (430)
|.. ..|..|..- .|.... ....+ -+.+|++++.+.+-...++.+ |-
T Consensus 252 ~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~--------Wl 323 (598)
T PRK10785 252 GDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRH--------WL 323 (598)
T ss_pred CCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHH--------hh
Confidence 110 011222210 000000 00011 145688877776544445555 44
Q ss_pred CCC-ceeEE--eecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEc
Q 014151 202 NDP-TIFAW--ELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVG 249 (430)
Q Consensus 202 ~~p-~I~~w--el~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G 249 (430)
+.| .|-+| ++.+|-.-.. ....-..+.+++.+.+|+..|+..+ +|
T Consensus 324 ~~~~giDG~RlDva~~v~~~~--~~~~~~~f~~~~~~~vk~~~pd~~l-ig 371 (598)
T PRK10785 324 KAPYNIDGWRLDVVHMLGEGG--GARNNLQHVAGITQAAKEENPEAYV-LG 371 (598)
T ss_pred cCCCCCcEEEEecHhHhcccc--CccccHHHHHHHHHHHHhhCCCeEE-EE
Confidence 432 35455 4455532111 0112346778899999999998654 55
No 49
>PLN00197 beta-amylase; Provisional
Probab=96.05 E-value=0.047 Score=56.77 Aligned_cols=119 Identities=18% Similarity=0.320 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCcccc-CCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCc---
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQI-SPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGK--- 150 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~-~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~--- 150 (430)
+...++..|+.+|.+|+.-|=+=++ |-.+|. .|++|| |..+.++++.+++.|||+.+.+.- +..||.
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvW----WGiVE~~~p~~Yd---WsgY~~L~~mvr~~GLKlq~VmSF--HqCGGNVGD 195 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVW----WGLVERESPGVYN---WGGYNELLEMAKRHGLKVQAVMSF--HQCGGNVGD 195 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeee----eeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEe--cccCCCCCC
Confidence 4678999999999999999987332 444554 789999 888999999999999999665421 123432
Q ss_pred --c-hhhhhhhhhCCCCCCCCCCCCCCH----------------------HHHHHHHHHHHHHHhccCCcccccccC--C
Q 014151 151 --T-QYVNWAWEEGIGISSSNDSFFFDP----------------------SIHKYFKHYVKTVLTRKNTITGVEYRN--D 203 (430)
Q Consensus 151 --~-~y~~W~~~~G~~~~~~~~~f~~d~----------------------~~~~~~~~~~~~lv~R~n~~tg~~yk~--~ 203 (430)
. ..|.|....|. ...+-||+|+ ...+.|.+|.+.+-.. +++ .
T Consensus 196 ~~~IpLP~WV~~~g~---~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~--------F~~~l~ 264 (573)
T PLN00197 196 SCTIPLPKWVVEEVD---KDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDN--------FKHLLG 264 (573)
T ss_pred cccccCCHHHHHhhc---cCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHH--------HHHHhc
Confidence 1 25778865332 1122233321 2357777777777666 433 1
Q ss_pred CceeEEeecC
Q 014151 204 PTIFAWELIN 213 (430)
Q Consensus 204 p~I~~wel~N 213 (430)
..|...+++=
T Consensus 265 ~~I~eI~VGl 274 (573)
T PLN00197 265 DTIVEIQVGM 274 (573)
T ss_pred CceeEEEecc
Confidence 3566666653
No 50
>PLN02161 beta-amylase
Probab=95.96 E-value=0.099 Score=53.95 Aligned_cols=130 Identities=14% Similarity=0.186 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCcccc-CCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCc---
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQI-SPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGK--- 150 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~-~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~--- 150 (430)
+...++..|+.+|.+|+.-|=+=++ |-.+|. .|++|| |..+.++++.+++.|||+.+.+.- +..||.
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVW----WGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSF--HqCGGNvGd 185 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVW----WGIVERFSPLEFK---WSLYEELFRLISEAGLKLHVALCF--HSNMHLFGG 185 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEee----eeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEe--cccCCCCCC
Confidence 4678999999999999999987332 444554 788999 888999999999999998665421 112221
Q ss_pred c---hhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCCCChHHHH
Q 014151 151 T---QYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSDPSGDTLQ 227 (430)
Q Consensus 151 ~---~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~ 227 (430)
+ ..|.|....|. ...+-||+|+.- .++. --++|.+-|+|-......-+...
T Consensus 186 ~~~IpLP~WV~~~g~---~~pDi~ftDr~G----------------------~rn~-EyLSlg~D~~pvl~GRTplq~Y~ 239 (531)
T PLN02161 186 KGGISLPLWIREIGD---VNKDIYYRDKNG----------------------FSNN-DYLTLGVDQLPLFGGRTAVQCYE 239 (531)
T ss_pred ccCccCCHHHHhhhc---cCCCceEEcCCC----------------------Cccc-ceeeeecccchhcCCCCHHHHHH
Confidence 0 25778866443 344567887421 1222 34579999999875432123444
Q ss_pred HHHHHHHHHHHh
Q 014151 228 DWIDEMSAFVKS 239 (430)
Q Consensus 228 ~w~~~~~~~Ir~ 239 (430)
+|++......+.
T Consensus 240 Dfm~SFr~~F~~ 251 (531)
T PLN02161 240 DFMLSFSTKFEP 251 (531)
T ss_pred HHHHHHHHHHHH
Confidence 555444444333
No 51
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=95.95 E-value=0.31 Score=52.81 Aligned_cols=167 Identities=8% Similarity=0.104 Sum_probs=86.1
Q ss_pred HHHHHHH-HHHHHHcCCCEEEEccccC----CCC--Cc---cccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcc
Q 014151 76 RARVGAM-LQAGAKMGLTVCRTWAFND----GGY--NS---LQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQ 145 (430)
Q Consensus 76 ~~~~~~~-~~~~~~~G~n~vR~~~~~~----g~~--~~---~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~ 145 (430)
...+.+. ++.++++|+|+|=+-...+ ..| .. +.+.+ .|. ..+.|.++|++|.++||+||+++.-+..
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~-~~G--t~~dlk~lV~~~H~~Gi~VilD~V~NH~ 231 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTS-RFG--TPDDFMYFVDACHQAGIGVILDWVPGHF 231 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCccccc-ccC--CHHHHHHHHHHHHHCCCEEEEEecccCc
Confidence 4444455 5999999999999843221 111 11 11111 222 1457899999999999999999753211
Q ss_pred cCC--Ccchh---hhhhhhh---CCCCCCCCCC-CCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCC
Q 014151 146 AYG--GKTQY---VNWAWEE---GIGISSSNDS-FFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPR 216 (430)
Q Consensus 146 ~~g--g~~~y---~~W~~~~---G~~~~~~~~~-f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~ 216 (430)
... +...+ +.|.... +........+ -+.+|++++.+.+.++..++. =-+-|.++---+.++-++-.+++.
T Consensus 232 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~e-y~iDG~R~D~v~~~~~~~~~~~~~ 310 (613)
T TIGR01515 232 PKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEF-YHIDGLRVDAVASMLYLDYSRDEG 310 (613)
T ss_pred CCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHH-hCCcEEEEcCHHHhhhhccccccc
Confidence 000 00000 0010000 0000000011 135789999999999988876 012232221112344333333332
Q ss_pred C-----CCCCChHHHHHHHHHHHHHHHhcCCCCEE
Q 014151 217 C-----MSDPSGDTLQDWIDEMSAFVKSIDKKHLV 246 (430)
Q Consensus 217 ~-----~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV 246 (430)
. ........-..+++++.+.||+..|+.++
T Consensus 311 ~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~l 345 (613)
T TIGR01515 311 EWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVT 345 (613)
T ss_pred cccccccCCcCChHHHHHHHHHHHHHHHHCCCeEE
Confidence 1 00000123457889999999999998644
No 52
>PLN02705 beta-amylase
Probab=95.89 E-value=0.097 Score=54.98 Aligned_cols=130 Identities=15% Similarity=0.269 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCcccc-CCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCc---
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQI-SPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGK--- 150 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~-~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~--- 150 (430)
+...++..|+.+|.+|+.-|=+=++ |-.+|. .|+.|| |..+.++++.+++.||||.+.+.- +..||.
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVW----WGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSF--HqCGGNVGD 336 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCW----WGIVEGWNPQKYV---WSGYRELFNIIREFKLKLQVVMAF--HEYGGNASG 336 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeee----eeEeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEe--eccCCCCCC
Confidence 5688999999999999999987332 444554 688999 888999999999999998665421 123432
Q ss_pred --c-hhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCCCChHHHH
Q 014151 151 --T-QYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSDPSGDTLQ 227 (430)
Q Consensus 151 --~-~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~ 227 (430)
. ..|.|+...|. ...+-||+|+.- .++.. -++|-+-++|-......-+...
T Consensus 337 ~~~IPLP~WV~e~g~---~nPDifftDr~G----------------------~rn~E-yLSlg~D~~pvl~GRTplq~Y~ 390 (681)
T PLN02705 337 NVMISLPQWVLEIGK---DNQDIFFTDREG----------------------RRNTE-CLSWSIDKERVLKGRTGIEVYF 390 (681)
T ss_pred cccccCCHHHHHhcc---cCCCceeecCCC----------------------Ccccc-eeeeecCcccccCCCCHHHHHH
Confidence 1 25678876543 334567887421 12233 4469999999764432224455
Q ss_pred HHHHHHHHHHHh
Q 014151 228 DWIDEMSAFVKS 239 (430)
Q Consensus 228 ~w~~~~~~~Ir~ 239 (430)
+|++......+.
T Consensus 391 DFM~SFr~~F~~ 402 (681)
T PLN02705 391 DFMRSFRSEFDD 402 (681)
T ss_pred HHHHHHHHHHHH
Confidence 555554444444
No 53
>PLN02801 beta-amylase
Probab=95.87 E-value=0.11 Score=53.67 Aligned_cols=130 Identities=15% Similarity=0.258 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCcccc-CCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCc---
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQI-SPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGK--- 150 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~-~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~--- 150 (430)
+...++..|+.+|++|+.-|=+=++ |-.+|. .|++|| |..+.++++.+++.|||+.+.+.- +..||.
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVW----WGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlq~vmSF--HqCGGNVGD 105 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVW----WGIVESKGPKQYD---WSAYRSLFELVQSFGLKIQAIMSF--HQCGGNVGD 105 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeee----eeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEEe--cccCCCCCC
Confidence 4678999999999999999987332 444554 689999 888999999999999999665421 123433
Q ss_pred --c-hhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCCCChHHHH
Q 014151 151 --T-QYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSDPSGDTLQ 227 (430)
Q Consensus 151 --~-~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~ 227 (430)
. ..|.|+...|. ...+-||+|+.- .++ +--++|.+-|+|-......-+...
T Consensus 106 ~~~IpLP~WV~~~g~---~~pDi~ftDr~G----------------------~rn-~EyLSlg~D~~pvl~GRTplq~Y~ 159 (517)
T PLN02801 106 AVNIPIPQWVRDVGD---SDPDIFYTNRSG----------------------NRN-KEYLSIGVDNLPLFHGRTAVEMYS 159 (517)
T ss_pred cccccCCHHHHHhhc---cCCCceeecCCC----------------------CcC-cceeeeccCcccccCCCCHHHHHH
Confidence 1 14678876443 344567887421 122 334578999999875432124455
Q ss_pred HHHHHHHHHHHh
Q 014151 228 DWIDEMSAFVKS 239 (430)
Q Consensus 228 ~w~~~~~~~Ir~ 239 (430)
+|++........
T Consensus 160 Dfm~SFr~~F~~ 171 (517)
T PLN02801 160 DYMKSFRENMAD 171 (517)
T ss_pred HHHHHHHHHHHH
Confidence 555555544444
No 54
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.86 E-value=0.034 Score=47.78 Aligned_cols=107 Identities=12% Similarity=0.279 Sum_probs=68.2
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCC---C-ccc-cCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhh
Q 014151 80 GAMLQAGAKMGLTVCRTWAFNDGGY---N-SLQ-ISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYV 154 (430)
Q Consensus 80 ~~~~~~~~~~G~n~vR~~~~~~g~~---~-~~~-~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~ 154 (430)
++.++.+++.|+|+|-+++-+.++| | .+. ..|+. . .+.|-+++++|+++||+|++-+.-.|+.. -...+|
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~---~Dllge~v~a~h~~Girv~ay~~~~~d~~-~~~~HP 77 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-K---RDLLGEQVEACHERGIRVPAYFDFSWDED-AAERHP 77 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-C---cCHHHHHHHHHHHCCCEEEEEEeeecChH-HHHhCC
Confidence 5677889999999999976544432 2 111 12321 1 46788999999999999999765545432 124567
Q ss_pred hhhhh--hCCCCCC---CCCCCC---CCHHHHHHHHHHHHHHHhc
Q 014151 155 NWAWE--EGIGISS---SNDSFF---FDPSIHKYFKHYVKTVLTR 191 (430)
Q Consensus 155 ~W~~~--~G~~~~~---~~~~f~---~d~~~~~~~~~~~~~lv~R 191 (430)
.|..- .|.+... ....++ -|..+++...+.++++++|
T Consensus 78 eW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~ 122 (132)
T PF14871_consen 78 EWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDR 122 (132)
T ss_pred ceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHc
Confidence 88753 2332110 011122 2346778999999999999
No 55
>PLN02905 beta-amylase
Probab=95.84 E-value=0.11 Score=54.83 Aligned_cols=130 Identities=15% Similarity=0.269 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCcccc-CCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcc--
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQI-SPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKT-- 151 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~-~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~-- 151 (430)
+...++..|+.+|.+|+.-|=+=++ |-.+|. .|++|| |..+.++++.+++.|||+.+.+.- +..||.-
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVW----WGiVE~~gP~~Yd---WsgY~~L~~mvr~~GLKlqvVMSF--HqCGGNVGD 354 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCW----WGIVEAHAPQEYN---WNGYKRLFQMVRELKLKLQVVMSF--HECGGNVGD 354 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeee----eeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEe--cccCCCCCC
Confidence 5678999999999999999987332 444554 688999 888999999999999999665431 1234431
Q ss_pred ----hhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCCCChHHHH
Q 014151 152 ----QYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSDPSGDTLQ 227 (430)
Q Consensus 152 ----~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~ 227 (430)
..|.|....|. ...+-||+|+.- .++... ++|-+-|+|-......-+...
T Consensus 355 ~~~IPLP~WV~e~g~---~nPDifftDrsG----------------------~rn~Ey-LSlg~D~~pvl~GRTplq~Y~ 408 (702)
T PLN02905 355 DVCIPLPHWVAEIGR---SNPDIFFTDREG----------------------RRNPEC-LSWGIDKERILRGRTALEVYF 408 (702)
T ss_pred cccccCCHHHHHhhh---cCCCceEecCCC----------------------CccCce-eeeecccccccCCCCHHHHHH
Confidence 25678765442 334568887421 123334 459999999765432224445
Q ss_pred HHHHHHHHHHHh
Q 014151 228 DWIDEMSAFVKS 239 (430)
Q Consensus 228 ~w~~~~~~~Ir~ 239 (430)
+|++......+.
T Consensus 409 DFM~SFr~~F~~ 420 (702)
T PLN02905 409 DYMRSFRVEFDE 420 (702)
T ss_pred HHHHHHHHHHHH
Confidence 555544444444
No 56
>PRK12313 glycogen branching enzyme; Provisional
Probab=95.81 E-value=0.4 Score=52.17 Aligned_cols=163 Identities=9% Similarity=0.105 Sum_probs=82.6
Q ss_pred HHHHHHHHHHcCCCEEEEccccC----CCC--Cc---cccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcc----
Q 014151 79 VGAMLQAGAKMGLTVCRTWAFND----GGY--NS---LQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQ---- 145 (430)
Q Consensus 79 ~~~~~~~~~~~G~n~vR~~~~~~----g~~--~~---~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~---- 145 (430)
+++.|+.++++|+|+|=+-...+ +.| .. +.+.| .|. ..+.|.++|++|+++||+||+++.-+..
T Consensus 173 ~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~-~~G--t~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~ 249 (633)
T PRK12313 173 ADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS-RYG--TPEDFMYLVDALHQNGIGVILDWVPGHFPKDD 249 (633)
T ss_pred HHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC-CCC--CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCc
Confidence 44446999999999999744311 111 11 11111 222 2567899999999999999999753211
Q ss_pred ----cCCCcchhhhhhhh-hCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEee-------c
Q 014151 146 ----AYGGKTQYVNWAWE-EGIGISSSNDS-FFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWEL-------I 212 (430)
Q Consensus 146 ----~~gg~~~y~~W~~~-~G~~~~~~~~~-f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel-------~ 212 (430)
.+.|.+.|. +... .+....-...+ -+.+|++++.+.+.++..++. =-+-|.++---++++..+- .
T Consensus 250 ~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~-~~iDG~R~D~~~~~~~~d~~~~~~~~~ 327 (633)
T PRK12313 250 DGLAYFDGTPLYE-YQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDE-YHLDGLRVDAVSNMLYLDYDEEGEWTP 327 (633)
T ss_pred ccccccCCCccee-ecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHH-hCCcEEEEcChhhhhhcccccccCcCC
Confidence 010100000 0000 00000000011 146789999988888888875 0122222211111211111 1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEcc
Q 014151 213 NEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGL 250 (430)
Q Consensus 213 NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~ 250 (430)
|+... ..+. ....+++++.+.||+..|+. +++|.
T Consensus 328 ~~~~~--~~~~-~~~~fl~~~~~~v~~~~p~~-~liaE 361 (633)
T PRK12313 328 NKYGG--RENL-EAIYFLQKLNEVVYLEHPDV-LMIAE 361 (633)
T ss_pred cccCC--CCCc-HHHHHHHHHHHHHHHHCCCe-EEEEE
Confidence 11111 0111 23568899999999999985 55554
No 57
>PLN02803 beta-amylase
Probab=95.79 E-value=0.11 Score=53.99 Aligned_cols=130 Identities=17% Similarity=0.242 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCcccc-CCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcc--
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQI-SPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKT-- 151 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~-~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~-- 151 (430)
+...++..|+.+|.+|+.-|=+=++ |-.+|. .|++|| |..+.++++.+++.|||+.+.+.- +..||.-
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVW----WGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSF--HqCGGNVGD 175 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAW----WGLVEKDGPMKYN---WEGYAELVQMVQKHGLKLQVVMSF--HQCGGNVGD 175 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEee----eeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEe--cccCCCCCC
Confidence 4678999999999999999887332 444554 589999 888999999999999999665421 1234431
Q ss_pred ----hhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCCCChHHHH
Q 014151 152 ----QYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSDPSGDTLQ 227 (430)
Q Consensus 152 ----~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~ 227 (430)
..|.|....|. .+.+-||+|+.- .++. --+++.+-|+|-......-+...
T Consensus 176 ~~~IpLP~WV~e~~~---~~pDi~ftDr~G----------------------~rn~-EyLSlg~D~~pvl~GRTplq~Y~ 229 (548)
T PLN02803 176 SCSIPLPPWVLEEMS---KNPDLVYTDRSG----------------------RRNP-EYISLGCDSLPVLRGRTPIQVYS 229 (548)
T ss_pred cccccCCHHHHHhhh---cCCCceEecCCC----------------------Cccc-ceeccccccchhccCCCHHHHHH
Confidence 25678765442 334567887421 1222 34568888998875432124455
Q ss_pred HHHHHHHHHHHh
Q 014151 228 DWIDEMSAFVKS 239 (430)
Q Consensus 228 ~w~~~~~~~Ir~ 239 (430)
+|++......+.
T Consensus 230 Dfm~SFr~~F~~ 241 (548)
T PLN02803 230 DYMRSFRERFKD 241 (548)
T ss_pred HHHHHHHHHHHH
Confidence 555544444444
No 58
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.69 E-value=0.39 Score=53.09 Aligned_cols=167 Identities=14% Similarity=0.200 Sum_probs=83.2
Q ss_pred HHHH-HHHHHHHHcCCCEEEEccccC----CCC--Cc---cccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcc-
Q 014151 77 ARVG-AMLQAGAKMGLTVCRTWAFND----GGY--NS---LQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQ- 145 (430)
Q Consensus 77 ~~~~-~~~~~~~~~G~n~vR~~~~~~----g~~--~~---~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~- 145 (430)
..+. +.++.++++|+|+|=+-...+ ..| .. +.+.| .|. ..+.|.++|++|.++||+||+++.-+..
T Consensus 265 ~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~-~~G--t~~dfk~lV~~~H~~Gi~VilD~V~NH~~ 341 (726)
T PRK05402 265 RELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTS-RFG--TPDDFRYFVDACHQAGIGVILDWVPAHFP 341 (726)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCc-ccC--CHHHHHHHHHHHHHCCCEEEEEECCCCCC
Confidence 3444 446999999999999844321 111 10 11222 121 2567899999999999999999753211
Q ss_pred --c-----CCCcchhh--hhhhhhCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecC-C
Q 014151 146 --A-----YGGKTQYV--NWAWEEGIGISSSNDS-FFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELIN-E 214 (430)
Q Consensus 146 --~-----~gg~~~y~--~W~~~~G~~~~~~~~~-f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~N-E 214 (430)
. +.|.+.|. .+. .|....-.... =+.+|++++.+.+.++..+++ =-+-|.++---..++-++-.. +
T Consensus 342 ~~~~~~~~~~~~~~y~~~~~~--~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e-~~iDG~R~D~v~~~~~~~~~~~~ 418 (726)
T PRK05402 342 KDAHGLARFDGTALYEHADPR--EGEHPDWGTLIFNYGRNEVRNFLVANALYWLEE-FHIDGLRVDAVASMLYLDYSRKE 418 (726)
T ss_pred CCccchhccCCCcceeccCCc--CCccCCCCCccccCCCHHHHHHHHHHHHHHHHH-hCCcEEEECCHHHhhhccccccc
Confidence 0 11111010 000 00000000001 156789999999888888876 011222121001111111110 0
Q ss_pred ----CCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEcc
Q 014151 215 ----PRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGL 250 (430)
Q Consensus 215 ----p~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~ 250 (430)
|+............+++++.+.||+..|+.+ ++|.
T Consensus 419 g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~-liaE 457 (726)
T PRK05402 419 GEWIPNIYGGRENLEAIDFLRELNAVVHEEFPGAL-TIAE 457 (726)
T ss_pred cccccccccCcCCHHHHHHHHHHHHHHHHHCCCeE-EEEE
Confidence 1100000112345688999999999999865 4443
No 59
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=95.66 E-value=0.2 Score=50.94 Aligned_cols=177 Identities=18% Similarity=0.248 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHcCCCEEEEcccc--CC-CCC----ccccCCCCC------ChHHHHHHHHHHHHHHHcCCEEEEeccCCc
Q 014151 78 RVGAMLQAGAKMGLTVCRTWAFN--DG-GYN----SLQISPGQF------DERVFKALDHVIVEARKNGVRLLLSLVNNL 144 (430)
Q Consensus 78 ~~~~~~~~~~~~G~n~vR~~~~~--~g-~~~----~~~~~pg~~------de~~l~~lD~~l~~A~~~Gi~vil~l~~~w 144 (430)
.-.+.++.+|++-+-++|...-+ ++ .|. +.+..|-++ .|..-=...+++++|++.|..+.+.+.-.
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~Gt~EF~~~~e~iGaep~~avN~G- 128 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFGTHEFMDWCELIGAEPYIAVNLG- 128 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhcccccccccccccHHHHHHHHHHhCCceEEEEecC-
Confidence 44556888999999999985422 21 231 112233222 24444467899999999999999887431
Q ss_pred ccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCC-ceeEEeecCCCCCC---CC
Q 014151 145 QAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDP-TIFAWELINEPRCM---SD 220 (430)
Q Consensus 145 ~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p-~I~~wel~NEp~~~---~~ 220 (430)
++|.+.-..|..--- .+....|.| +|. ++ =+..| .|-.|.|+||-..+ ..
T Consensus 129 --srgvd~ar~~vEY~n----~pggtywsd----------lR~--~~--------G~~~P~nvK~w~lGNEm~GpWq~G~ 182 (501)
T COG3534 129 --SRGVDEARNWVEYCN----HPGGTYWSD----------LRR--EN--------GREEPWNVKYWGLGNEMDGPWQCGH 182 (501)
T ss_pred --CccHHHHHHHHHHcc----CCCCChhHH----------HHH--hc--------CCCCCcccceEEeccccCCCccccc
Confidence 244443344443100 111122222 111 11 12234 78889999997433 11
Q ss_pred CChHHHHHHHHHHHHHHHhcCCC-CEEEEccCCccCCCCCCCcccCc--cchhhccCcchhhccCCCCcceEEeeecCC
Q 014151 221 PSGDTLQDWIDEMSAFVKSIDKK-HLVTVGLEGFYGPKSPKRLTVNP--EMWASALGSDFIRNSNNDNIDFASVHIYPD 296 (430)
Q Consensus 221 ~~~~~~~~w~~~~~~~Ir~~dp~-~lV~~G~~g~~~~~~~~~~~~np--~~w~~~~g~df~~~~~~~~iD~~s~H~Y~~ 296 (430)
...+..-.++++..++.|=.||. -.+.+|+.+- + |+ ..|... ....+...+|++|+|+|-.
T Consensus 183 ~~a~EY~~~A~e~~k~~k~~d~t~e~~v~g~a~~---~-------n~~~~~W~~~-----vl~~~~e~vD~ISlH~Y~G 246 (501)
T COG3534 183 KTAPEYGRLANEYRKYMKYFDPTIENVVCGSANG---A-------NPTDPNWEAV-----VLEEAYERVDYISLHYYKG 246 (501)
T ss_pred ccCHHHHHHHHHHHHHHhhcCccccceEEeecCC---C-------CCCchHHHHH-----HHHHHhhhcCeEEEEEecC
Confidence 23455666888888999999996 4666665321 1 22 145421 1223456799999999954
No 60
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=95.51 E-value=0.039 Score=51.88 Aligned_cols=58 Identities=28% Similarity=0.372 Sum_probs=33.9
Q ss_pred HHHHHHHHhccCCcccccccCC---CceeEEeecCCCCCCC----C--C---ChHHHHHHHHHHHHHHHhcCCCCEEE
Q 014151 182 KHYVKTVLTRKNTITGVEYRND---PTIFAWELINEPRCMS----D--P---SGDTLQDWIDEMSAFVKSIDKKHLVT 247 (430)
Q Consensus 182 ~~~~~~lv~R~n~~tg~~yk~~---p~I~~wel~NEp~~~~----~--~---~~~~~~~w~~~~~~~Ir~~dp~~lV~ 247 (430)
.+++..|+++ |+.. -.|-.|.|-|||..-. + + ..+.+..=.-+++++||++||+..|+
T Consensus 107 ~ewV~~l~~~--------~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~ 176 (239)
T PF12891_consen 107 DEWVNYLVNK--------YGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVF 176 (239)
T ss_dssp HHHHHHHHHH--------H--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEE
T ss_pred HHHHHHHHHH--------HhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEe
Confidence 4556666776 5543 2577899999998521 1 1 22444444567889999999998875
No 61
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=95.33 E-value=0.37 Score=47.37 Aligned_cols=162 Identities=10% Similarity=0.100 Sum_probs=92.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEccccCC----CCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCC
Q 014151 73 DYSRARVGAMLQAGAKMGLTVCRTWAFNDG----GYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYG 148 (430)
Q Consensus 73 ~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g----~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~g 148 (430)
+++.+.+.+.++.|+..|+|.+-++. .|. +.+.+-...|.|. -+.+.++++.|+++||.||+.+-. +|
T Consensus 13 ~~~~~~lk~~id~ma~~k~N~l~lhl-~D~f~~~~~p~~~~~~~~yT---~~ei~ei~~yA~~~gI~vIPeid~----pG 84 (301)
T cd06565 13 VPKVSYLKKLLRLLALLGANGLLLYY-EDTFPYEGEPEVGRMRGAYT---KEEIREIDDYAAELGIEVIPLIQT----LG 84 (301)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEE-ecceecCCCcccccCCCCcC---HHHHHHHHHHHHHcCCEEEecCCC----HH
Confidence 35678999999999999999999865 331 1222222346676 456788999999999999997632 22
Q ss_pred CcchhhhhhhhhCC-CCC-CCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCC---CCCCh
Q 014151 149 GKTQYVNWAWEEGI-GIS-SSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCM---SDPSG 223 (430)
Q Consensus 149 g~~~y~~W~~~~G~-~~~-~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~---~~~~~ 223 (430)
=+.....|..-... ... ....--.++|++.+..++.+++++.-. +-.=++.+.|.. ++++--+.+. .....
T Consensus 85 H~~~~l~~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f-~s~~~HIG~DE~---~~~g~~~~~~~~~~~~~~ 160 (301)
T cd06565 85 HLEFILKHPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELH-PSKYIHIGMDEA---YDLGRGRSLRKHGNLGRG 160 (301)
T ss_pred HHHHHHhCcccccccccCCCCCccCCCChhHHHHHHHHHHHHHHhC-CCCeEEECCCcc---cccCCCHHHHHhcCCCHH
Confidence 11111111100000 000 112223567899999999999998871 111122222221 1111111100 00123
Q ss_pred HHHHHHHHHHHHHHHhcCCCCEEE
Q 014151 224 DTLQDWIDEMSAFVKSIDKKHLVT 247 (430)
Q Consensus 224 ~~~~~w~~~~~~~Ir~~dp~~lV~ 247 (430)
+.+..+++++++.+|+..+. ++.
T Consensus 161 ~l~~~~~~~v~~~v~~~g~~-~~~ 183 (301)
T cd06565 161 ELYLEHLKKVLKIIKKRGPK-PMM 183 (301)
T ss_pred HHHHHHHHHHHHHHHHcCCE-EEE
Confidence 56788999999999998873 443
No 62
>PRK14706 glycogen branching enzyme; Provisional
Probab=95.02 E-value=0.95 Score=49.21 Aligned_cols=163 Identities=9% Similarity=0.123 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHcCCCEEEEccccC----CCC--Cc---cccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCC---cc
Q 014151 78 RVGAMLQAGAKMGLTVCRTWAFND----GGY--NS---LQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNN---LQ 145 (430)
Q Consensus 78 ~~~~~~~~~~~~G~n~vR~~~~~~----g~~--~~---~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~---w~ 145 (430)
..++.++.++++|+|+|-+-...+ +.| .. +.+.+ .|. ..+.|.++|++|.++||+||+++.-+ ++
T Consensus 169 ~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~-~~g--~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~ 245 (639)
T PRK14706 169 LAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTS-RLG--TPEDFKYLVNHLHGLGIGVILDWVPGHFPTD 245 (639)
T ss_pred HHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCccccccccc-ccC--CHHHHHHHHHHHHHCCCEEEEEecccccCcc
Confidence 444556899999999999844322 112 10 11111 221 25778999999999999999986432 11
Q ss_pred c-----CCCcchh--hhhhhhhCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEe------e
Q 014151 146 A-----YGGKTQY--VNWAWEEGIGISSSNDSF-FFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWE------L 211 (430)
Q Consensus 146 ~-----~gg~~~y--~~W~~~~G~~~~~~~~~f-~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~we------l 211 (430)
. +-|.+.| ..+. .|....-....| +.++++++.+.+-++.-++.. -+-|.++-.-.+++-++ +
T Consensus 246 ~~~l~~~dg~~~y~~~~~~--~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~-~iDG~R~Dav~~~ly~d~~~~~~~ 322 (639)
T PRK14706 246 ESGLAHFDGGPLYEYADPR--KGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDF-HVDGLRVDAVASMLYLDFSRTEWV 322 (639)
T ss_pred hhhhhccCCCcceeccCCc--CCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHh-CCCeEEEeeehheeecccCccccc
Confidence 0 0011101 0000 010000000011 357899999888888888640 12333332112332222 2
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEcc
Q 014151 212 INEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGL 250 (430)
Q Consensus 212 ~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~ 250 (430)
.|+..... ......+++++...||+..|+.+ +++.
T Consensus 323 ~~~~gg~~---n~~a~~fl~~ln~~v~~~~p~~~-~iAE 357 (639)
T PRK14706 323 PNIHGGRE---NLEAIAFLKRLNEVTHHMAPGCM-MIAE 357 (639)
T ss_pred ccccCCcc---cHHHHHHHHHHHHHHHHhCCCeE-EEEE
Confidence 23222211 13445688999999999999854 4443
No 63
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=94.87 E-value=0.78 Score=48.94 Aligned_cols=153 Identities=14% Similarity=0.181 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCC----CC--Cc---cccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCc
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRTWAFNDG----GY--NS---LQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNL 144 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~~~~~~g----~~--~~---~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w 144 (430)
.+-.-+.+.|+.++++|+|+|-+-...+. .| .. +.+.+ .|. ..+.|.++|++|+++||+||+++.-+
T Consensus 108 G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~-~~G--~~~e~k~lV~~aH~~Gi~VilD~V~N- 183 (542)
T TIGR02402 108 GTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN-AYG--GPDDLKALVDAAHGLGLGVILDVVYN- 183 (542)
T ss_pred CCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc-ccC--CHHHHHHHHHHHHHCCCEEEEEEccC-
Confidence 35566777899999999999998543210 11 11 11121 222 25678999999999999999997532
Q ss_pred ccCC--C--cchhhhhhhhhCCCCCCCCCCCCCCH---HHHHHHHHHHHHHHhccCCcccccccCCCceeEEee--cCCC
Q 014151 145 QAYG--G--KTQYVNWAWEEGIGISSSNDSFFFDP---SIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWEL--INEP 215 (430)
Q Consensus 145 ~~~g--g--~~~y~~W~~~~G~~~~~~~~~f~~d~---~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel--~NEp 215 (430)
..+ + .+.+..|........-+. .-=+.++ .+++.+.+.++..++. |+ |-+|=+ ....
T Consensus 184 -H~~~~~~~~~~~~~y~~~~~~~~wg~-~~n~~~~~~~~vr~~i~~~~~~W~~e--------~~----iDGfR~D~~~~~ 249 (542)
T TIGR02402 184 -HFGPEGNYLPRYAPYFTDRYSTPWGA-AINFDGPGSDEVRRYILDNALYWLRE--------YH----FDGLRLDAVHAI 249 (542)
T ss_pred -CCCCccccccccCccccCCCCCCCCC-ccccCCCcHHHHHHHHHHHHHHHHHH--------hC----CcEEEEeCHHHh
Confidence 111 1 111111221100000000 0113455 7888888878777765 43 323322 2111
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCC--CEEEEcc
Q 014151 216 RCMSDPSGDTLQDWIDEMSAFVKSIDKK--HLVTVGL 250 (430)
Q Consensus 216 ~~~~~~~~~~~~~w~~~~~~~Ir~~dp~--~lV~~G~ 250 (430)
.- ..-..+++++.+.+|++.|+ +.+.+|.
T Consensus 250 ~~------~~~~~~l~~~~~~~~~~~p~~~~~~li~E 280 (542)
T TIGR02402 250 AD------TSAKHILEELAREVHELAAELRPVHLIAE 280 (542)
T ss_pred cc------ccHHHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 10 01246788999999999887 2555654
No 64
>PRK12568 glycogen branching enzyme; Provisional
Probab=94.76 E-value=1.6 Score=48.02 Aligned_cols=166 Identities=10% Similarity=0.163 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHcCCCEEEEccccC----CCC--Cc---cccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCC-cc--
Q 014151 78 RVGAMLQAGAKMGLTVCRTWAFND----GGY--NS---LQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNN-LQ-- 145 (430)
Q Consensus 78 ~~~~~~~~~~~~G~n~vR~~~~~~----g~~--~~---~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~-w~-- 145 (430)
..++.+..++++|+|+|=+-...+ ..| .+ +.+.| .|. ..+.|.++|++|.++||+||+++.-+ -.
T Consensus 271 la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~-~~G--~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d 347 (730)
T PRK12568 271 LAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA-RHG--SPDGFAQFVDACHRAGIGVILDWVSAHFPDD 347 (730)
T ss_pred HHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc-ccC--CHHHHHHHHHHHHHCCCEEEEEeccccCCcc
Confidence 445568999999999999854321 112 11 11222 121 25678999999999999999987532 11
Q ss_pred -----cCCCcchhhhhhhhhCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEee--------
Q 014151 146 -----AYGGKTQYVNWAWEEGIGISSSNDS-FFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWEL-------- 211 (430)
Q Consensus 146 -----~~gg~~~y~~W~~~~G~~~~~~~~~-f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel-------- 211 (430)
.+.|...|..--...|....-.... =|.+|++++.+.+-++.-++. --+-|.++-.-.+++-.+-
T Consensus 348 ~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~e-yhIDG~R~DAva~mly~d~~r~~g~w~ 426 (730)
T PRK12568 348 AHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEH-YHLDGLRVDAVASMLYRDYGRAEGEWV 426 (730)
T ss_pred ccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHH-hCceEEEEcCHhHhhhhcccccccccc
Confidence 0111111100000000000000001 156788988888888888765 1122322211122332221
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEccC
Q 014151 212 INEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGLE 251 (430)
Q Consensus 212 ~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~ 251 (430)
-|+-.... .-....+++++.+.||+..|+.++ ++.+
T Consensus 427 pn~~gg~e---n~ea~~Fl~~ln~~v~~~~P~~~~-IAEe 462 (730)
T PRK12568 427 PNAHGGRE---NLEAVAFLRQLNREIASQFPGVLT-IAEE 462 (730)
T ss_pred ccccCCcc---ChHHHHHHHHHHHHHHHHCCCeEE-EEEc
Confidence 12211110 113457899999999999998654 4443
No 65
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=94.68 E-value=0.88 Score=44.79 Aligned_cols=148 Identities=13% Similarity=0.175 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCCC-------Cccc---------cCCCCCChHHHHHHHHHHHHHHHcCCEEE
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRTWAFNDGGY-------NSLQ---------ISPGQFDERVFKALDHVIVEARKNGVRLL 137 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~-------~~~~---------~~pg~~de~~l~~lD~~l~~A~~~Gi~vi 137 (430)
.+.+.+++.++.|+..++|++.++.-.+-+| |.+. +..|.|. -+.+.++++.|+++||.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT---~~di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYT---YAQLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeEC---HHHHHHHHHHHHHcCCEEE
Confidence 4678999999999999999999866433223 2221 1123455 3567899999999999999
Q ss_pred EeccCCcccCCCcch----hhhhhhh--hCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEe
Q 014151 138 LSLVNNLQAYGGKTQ----YVNWAWE--EGIGIS-SSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWE 210 (430)
Q Consensus 138 l~l~~~w~~~gg~~~----y~~W~~~--~G~~~~-~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~we 210 (430)
+.+.. +|-... |+.-... .+.... ....--.++|++.+..++.+++++.- +. .+.| -
T Consensus 90 PEiD~----PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~l--------f~-~~~i---H 153 (303)
T cd02742 90 PEIDM----PGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAEL--------FP-DRYL---H 153 (303)
T ss_pred Eeccc----hHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHh--------CC-CCeE---E
Confidence 97632 121111 1110000 000000 01112246788999999999999887 42 2222 1
Q ss_pred e-cCCCCCCCCCChHHHHHHHHHHHHHHHhcC
Q 014151 211 L-INEPRCMSDPSGDTLQDWIDEMSAFVKSID 241 (430)
Q Consensus 211 l-~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~d 241 (430)
+ +-|..... ...+.+..+++++.+.+++..
T Consensus 154 iGgDE~~~~~-~~~~l~~~f~~~~~~~v~~~g 184 (303)
T cd02742 154 IGGDEAHFKQ-DRKHLMSQFIQRVLDIVKKKG 184 (303)
T ss_pred ecceecCCCC-CHHHHHHHHHHHHHHHHHHcC
Confidence 1 22221111 123556788999999999876
No 66
>PRK14705 glycogen branching enzyme; Provisional
Probab=94.54 E-value=1.5 Score=50.86 Aligned_cols=166 Identities=13% Similarity=0.188 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHcCCCEEEEccccC----CCC--Cc---cccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCC-cc--
Q 014151 78 RVGAMLQAGAKMGLTVCRTWAFND----GGY--NS---LQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNN-LQ-- 145 (430)
Q Consensus 78 ~~~~~~~~~~~~G~n~vR~~~~~~----g~~--~~---~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~-w~-- 145 (430)
..++.++.+|++|+|+|=+-...+ +.| .. +.+. ..|. ..+.|.++|++|.++||+||+++.-+ ..
T Consensus 767 l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~-~ryG--t~~dfk~lVd~~H~~GI~VILD~V~nH~~~d 843 (1224)
T PRK14705 767 LAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPT-SRFG--HPDEFRFLVDSLHQAGIGVLLDWVPAHFPKD 843 (1224)
T ss_pred HHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcC-cccC--CHHHHHHHHHHHHHCCCEEEEEeccccCCcc
Confidence 345568999999999999854321 112 11 1111 1232 25678999999999999999996532 10
Q ss_pred -----cCCCcchhh--hhhhhhCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecC----
Q 014151 146 -----AYGGKTQYV--NWAWEEGIGISSSNDSF-FFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELIN---- 213 (430)
Q Consensus 146 -----~~gg~~~y~--~W~~~~G~~~~~~~~~f-~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~N---- 213 (430)
.+.|...|- +.. .|....-....| |.++++++.+.+-++..+++ =-+-|.++---.+++-.+-.-
T Consensus 844 ~~~l~~fdg~~~y~~~d~~--~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~e-yhiDGfR~Dav~~mly~Dysr~~g~ 920 (1224)
T PRK14705 844 SWALAQFDGQPLYEHADPA--LGEHPDWGTLIFDFGRTEVRNFLVANALYWLDE-FHIDGLRVDAVASMLYLDYSREEGQ 920 (1224)
T ss_pred hhhhhhcCCCcccccCCcc--cCCCCCCCCceecCCCHHHHHHHHHHHHHHHHH-hCCCcEEEeehhhhhhccccccccc
Confidence 011110000 000 000000000111 56788999998888888877 011222221112222112111
Q ss_pred -CCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEcc
Q 014151 214 -EPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGL 250 (430)
Q Consensus 214 -Ep~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~ 250 (430)
.|+............+++++.+.|++..|+.+ +++.
T Consensus 921 w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~-~IAE 957 (1224)
T PRK14705 921 WRPNRFGGRENLEAISFLQEVNATVYKTHPGAV-MIAE 957 (1224)
T ss_pred ccccccCCccChHHHHHHHHHHHHHHHHCCCeE-EEEE
Confidence 12222111112346789999999999988754 4444
No 67
>smart00642 Aamy Alpha-amylase domain.
Probab=94.48 E-value=0.15 Score=45.70 Aligned_cols=68 Identities=18% Similarity=0.280 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCC-----CCCccccCC-CCCCh--HHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDG-----GYNSLQISP-GQFDE--RVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g-----~~~~~~~~p-g~~de--~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
+-..+.+.++.++++|+|+|-+-...+. .+....+.. -..++ -..+.|.+++++|+++||+||+++.-
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 5677888899999999999998443211 010111000 00111 13578999999999999999999864
No 68
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=94.47 E-value=1.6 Score=43.33 Aligned_cols=147 Identities=14% Similarity=0.220 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCCCC-------ccc--------------------cCCCCCChHHHHHHHHHH
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRTWAFNDGGYN-------SLQ--------------------ISPGQFDERVFKALDHVI 126 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~-------~~~--------------------~~pg~~de~~l~~lD~~l 126 (430)
.+.+.+++.++.|+..++|++-++. +|+ |+ .+. ...+.|. -+.+.+++
T Consensus 14 ~~~~~ik~~id~ma~~K~N~lhlHl-tD~-~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv 88 (326)
T cd06564 14 YSMDFLKDIIKTMSWYKMNDLQLHL-NDN-LIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELI 88 (326)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEee-cCC-cccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHH
Confidence 4578999999999999999999855 442 21 110 0123344 45788999
Q ss_pred HHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCC----CCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccC
Q 014151 127 VEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGI----SSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRN 202 (430)
Q Consensus 127 ~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~----~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~ 202 (430)
+.|+++||.||+.+.. +|-......+....+... .....--.++|++.+..++.+++++.- +..
T Consensus 89 ~yA~~rgI~vIPEID~----PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~--------f~~ 156 (326)
T cd06564 89 AYAKDRGVNIIPEIDS----PGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDG--------FNP 156 (326)
T ss_pred HHHHHcCCeEeccCCC----cHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHh--------cCC
Confidence 9999999999987632 221111111110011100 011112246789999999999999987 432
Q ss_pred -CCceeEEee-cCCCCCCCCCChHHHHHHHHHHHHHHHhcC
Q 014151 203 -DPTIFAWEL-INEPRCMSDPSGDTLQDWIDEMSAFVKSID 241 (430)
Q Consensus 203 -~p~I~~wel-~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~d 241 (430)
.+.| -+ +-|.... ....+.+..|++++.+.|++.+
T Consensus 157 ~~~~~---HiGgDE~~~~-~~~~~~~~~f~~~~~~~v~~~g 193 (326)
T cd06564 157 KSDTV---HIGADEYAGD-AGYAEAFRAYVNDLAKYVKDKG 193 (326)
T ss_pred CCCEE---Eecccccccc-CccHHHHHHHHHHHHHHHHHcC
Confidence 2222 11 1121110 1124677889999999999874
No 69
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=93.71 E-value=2.4 Score=46.75 Aligned_cols=168 Identities=11% Similarity=0.191 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHcCCCEEEEccccC----CCC--Cc---cccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCC-ccc-
Q 014151 78 RVGAMLQAGAKMGLTVCRTWAFND----GGY--NS---LQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNN-LQA- 146 (430)
Q Consensus 78 ~~~~~~~~~~~~G~n~vR~~~~~~----g~~--~~---~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~-w~~- 146 (430)
.+++.|..++++|+|+|=+-...+ +.| .. +.+.+ .|. ..+.|.++|++|.++||+||+++..+ -..
T Consensus 252 ~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~-~~G--tp~dlk~LVd~aH~~GI~VilDvV~nH~~~~ 328 (758)
T PLN02447 252 FADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSS-RSG--TPEDLKYLIDKAHSLGLRVLMDVVHSHASKN 328 (758)
T ss_pred HHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccc-ccC--CHHHHHHHHHHHHHCCCEEEEEecccccccc
Confidence 356789999999999999844321 111 10 11111 121 24678899999999999999997532 100
Q ss_pred C-CCcchh----hhhhhhh--CCCCCCCCCCC-CCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEE------eec
Q 014151 147 Y-GGKTQY----VNWAWEE--GIGISSSNDSF-FFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAW------ELI 212 (430)
Q Consensus 147 ~-gg~~~y----~~W~~~~--G~~~~~~~~~f-~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~w------el~ 212 (430)
. .|...+ ..|.... |.........| |.++++++.+.+-++..++. =-+-|.++-.-.+++-. +..
T Consensus 329 ~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~e-y~IDGfRfDaV~smlY~~hg~~~~f~ 407 (758)
T PLN02447 329 TLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEE-YKFDGFRFDGVTSMLYHHHGLQMAFT 407 (758)
T ss_pred ccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHH-hCcccccccchhhhhccccCcccccc
Confidence 0 010000 0111110 00000000011 45688988888888888875 01233333222333211 111
Q ss_pred -CCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEcc
Q 014151 213 -NEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGL 250 (430)
Q Consensus 213 -NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~ 250 (430)
|...............+++.+...|++..|+.+ +++.
T Consensus 408 ~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~-~IAE 445 (758)
T PLN02447 408 GNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAV-TIAE 445 (758)
T ss_pred cCcccccCCccChHHHHHHHHHHHHHHHhCCCeE-EEEE
Confidence 111111111123446788899999999999864 4444
No 70
>PLN02960 alpha-amylase
Probab=93.39 E-value=3.3 Score=46.19 Aligned_cols=165 Identities=11% Similarity=0.181 Sum_probs=87.8
Q ss_pred CHHHH-HHHHHHHHHcCCCEEEEccccC----CCC--Cc---cccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCC-
Q 014151 75 SRARV-GAMLQAGAKMGLTVCRTWAFND----GGY--NS---LQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNN- 143 (430)
Q Consensus 75 ~~~~~-~~~~~~~~~~G~n~vR~~~~~~----g~~--~~---~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~- 143 (430)
+...+ ++.|..++++|+|+|=+-...+ ..| .. +.+. ..|.. .+.|.++|++|.++||+||+++.-+
T Consensus 414 tf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~-~~yGt--p~dfk~LVd~aH~~GI~VILDvV~NH 490 (897)
T PLN02960 414 SFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVS-SRFGT--PDDFKRLVDEAHGLGLLVFLDIVHSY 490 (897)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcc-cccCC--HHHHHHHHHHHHHCCCEEEEEecccc
Confidence 44444 5679999999999999854321 111 11 1111 12321 4678999999999999999997432
Q ss_pred cc--------cCCCcc-hhhhhhhhhCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEe--e
Q 014151 144 LQ--------AYGGKT-QYVNWAWEEGIGISSSNDSF-FFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWE--L 211 (430)
Q Consensus 144 w~--------~~gg~~-~y~~W~~~~G~~~~~~~~~f-~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~we--l 211 (430)
-. .+.|.+ .|-. ....|....-....| |.++++++.+.+-++..++. =-+-|.++-.-.+++-.+ .
T Consensus 491 ~~~d~~~~L~~FDG~~~~Yf~-~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~E-yhIDGfR~DAV~sMlY~d~g~ 568 (897)
T PLN02960 491 AAADEMVGLSLFDGSNDCYFH-SGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTE-YRVDGFQFHSLGSMLYTHNGF 568 (897)
T ss_pred cCCccccchhhcCCCccceee-cCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHH-HCCCceeecccceeeeeccCc
Confidence 10 011110 0000 000000000000111 46788999999888888865 123344343333443222 1
Q ss_pred cCCC-------CCCCCCChHHHHHHHHHHHHHHHhcCCCCEEE
Q 014151 212 INEP-------RCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVT 247 (430)
Q Consensus 212 ~NEp-------~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 247 (430)
.+++ +... ......+++++...|++..|+.++.
T Consensus 569 ~~~~G~~~~~~n~~~---d~~Ai~fL~~lN~~v~~~~P~vilI 608 (897)
T PLN02960 569 ASFTGDLDEYCNQYV---DRDALIYLILANEMLHQLHPNIITI 608 (897)
T ss_pred cccCCcccccCCccC---CchHHHHHHHHHHHHHhhCCCeEEE
Confidence 1111 1111 1345678899999999988876443
No 71
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=93.38 E-value=2.5 Score=42.39 Aligned_cols=144 Identities=14% Similarity=0.148 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcc-ccCC--CCCccccCCCCCC----hHHHHHHHHHHHHHHHcCCEEEEeccC-CcccC
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWA-FNDG--GYNSLQISPGQFD----ERVFKALDHVIVEARKNGVRLLLSLVN-NLQAY 147 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~-~~~g--~~~~~~~~pg~~d----e~~l~~lD~~l~~A~~~Gi~vil~l~~-~w~~~ 147 (430)
.-..++.++.++++|++-+=+-. +.|| -|+.-. ..|+ ....+-+.+++++|+++||++-+.++. .|...
T Consensus 90 ~fD~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~---t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~dw~~~ 166 (346)
T PF01120_consen 90 KFDADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKY---TDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWDWHHP 166 (346)
T ss_dssp T--HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT----SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSSCCCT
T ss_pred cCCHHHHHHHHHHcCCCEEEeehhhcCccccCCCCC---CcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchHhcCc
Confidence 34567888999999999766522 1222 132110 1122 233567889999999999999997654 23211
Q ss_pred CCcchhhhhhhhhCCCCCCCCCCC-CCCHH-HHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCCCChHH
Q 014151 148 GGKTQYVNWAWEEGIGISSSNDSF-FFDPS-IHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSDPSGDT 225 (430)
Q Consensus 148 gg~~~y~~W~~~~G~~~~~~~~~f-~~d~~-~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~~~~~ 225 (430)
. |..-. .+.. ...... -..++ ..+.+...+++|++| | +|.++=+|....... ..
T Consensus 167 ~----~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~ql~EL~~~--------Y--~~d~lWfDg~~~~~~------~~ 222 (346)
T PF01120_consen 167 D----YPPDE--EGDE--NGPADGPGNWQRYYNEYWLAQLRELLTR--------Y--KPDILWFDGGWPDPD------ED 222 (346)
T ss_dssp T----TTSSC--HCHH--CC--HCCHHHHHHHHHHHHHHHHHHHHC--------S--TESEEEEESTTSCCC------TH
T ss_pred c----cCCCc--cCCc--ccccccchhhHhHhhhhhHHHHHHHHhC--------C--CcceEEecCCCCccc------cc
Confidence 0 00000 0000 000000 00012 344777899999999 9 788887888776421 11
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEE
Q 014151 226 LQDWIDEMSAFVKSIDKKHLVTV 248 (430)
Q Consensus 226 ~~~w~~~~~~~Ir~~dp~~lV~~ 248 (430)
+. ..++.+.||+..|+.+|..
T Consensus 223 ~~--~~~~~~~i~~~qp~~ii~~ 243 (346)
T PF01120_consen 223 WD--SAELYNWIRKLQPDVIINN 243 (346)
T ss_dssp HH--HHHHHHHHHHHSTTSEEEC
T ss_pred cC--HHHHHHHHHHhCCeEEEec
Confidence 21 2788888999999888864
No 72
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=93.24 E-value=0.77 Score=46.31 Aligned_cols=231 Identities=14% Similarity=0.173 Sum_probs=119.9
Q ss_pred HHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCC
Q 014151 85 AGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGI 164 (430)
Q Consensus 85 ~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~ 164 (430)
.-++.|+|-||.+.. |+-.... -.|+ +..+|++++.-...|+-.|.... .|+...-..+ .|..+
T Consensus 13 ~~~Ei~v~yi~~~~v----~h~~~q~-~~~~---~t~~d~i~d~~~~~~~~~ie~~l-~~~~l~~~~~--~wq~n----- 76 (428)
T COG3664 13 TDDEIQVNYIRRHGV----WHVNAQK-LFYP---FTYIDEIIDTLLDLGLDLIELFL-IWNNLNTKEH--QWQLN----- 76 (428)
T ss_pred hhhhhceeeehhcce----eeeeecc-ccCC---hHHHHHHHHHHHHhccHHHHHhh-cccchhhhhh--hcccc-----
Confidence 346889999987543 2211111 1234 56788888888888854443322 2443211111 23211
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCC-CceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 014151 165 SSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRND-PTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKK 243 (430)
Q Consensus 165 ~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~-p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~ 243 (430)
-..+...+++++.++++++.| |+-. -+...++..|||+...+ ...+-+-+..+ .|+.+|.
T Consensus 77 ------~~~~~~~~dl~~~fl~h~~~~--------vg~e~v~kw~f~~~~~pn~~ad--~~eyfk~y~~~---a~~~~p~ 137 (428)
T COG3664 77 ------VDDPKSVFDLIAAFLKHVIRR--------VGVEFVRKWPFYSPNEPNLLAD--KQEYFKLYDAT---ARQRAPS 137 (428)
T ss_pred ------cCCcHhHHHHHHHHHHHHHHH--------hChhheeecceeecCCCCcccc--hHHHHHHHHhh---hhccCcc
Confidence 011224889999999999999 6532 35667899999998643 22222222333 3456665
Q ss_pred CEEEEccCCccCCCCCCCcccCccchhhccCcchhhccCCCCcceEEeeecCCCC---CCCcchhh-------hHHHHHH
Q 014151 244 HLVTVGLEGFYGPKSPKRLTVNPEMWASALGSDFIRNSNNDNIDFASVHIYPDHW---FHDLEFED-------DLKFVTK 313 (430)
Q Consensus 244 ~lV~~G~~g~~~~~~~~~~~~np~~w~~~~g~df~~~~~~~~iD~~s~H~Y~~~w---~~~~~~~~-------~~~~~~~ 313 (430)
-.| |. .+. +. .-..|.+ ..+.+||++.|.|...- ......+. .++ ..+
T Consensus 138 i~v--g~--~w~----------~e-----~l~~~~k--~~d~idfvt~~a~~~~av~~~~~~~~~~~l~~~~~~l~-~~r 195 (428)
T COG3664 138 IQV--GG--SWN----------TE-----RLHEFLK--KADEIDFVTELANSVDAVDFSTPGAEEVKLSELKRTLE-DLR 195 (428)
T ss_pred eee--cc--ccC----------cH-----HHhhhhh--ccCcccceeecccccccccccCCCchhhhhhhhhhhhh-HHH
Confidence 333 31 121 10 0011222 35789999999996321 11000000 001 112
Q ss_pred HHHHHHHhhhhcCCCcEEEEecCCCCCCCCCChhHHHHHHHH--HHHHHHHHHhcCCCcccceeeeecc
Q 014151 314 WMLSHIEDGDKELNKPVFFTEYGLSNLIKGFEPSLRDKLYKT--ILDIVYKSAKRKRSGAGALIWQLFV 380 (430)
Q Consensus 314 ~l~~~~~~a~~~~gkPv~v~EfG~~~~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~G~~~W~~~~ 380 (430)
.+.+.++... .|+|+++.||-....+.. ..-..|++. +...+.+ .++.+.+.-+|.+.+
T Consensus 196 ~~~d~i~~~~--~~~pl~~~~wntlt~~~~---~~n~sy~raa~i~~~Lr~---~g~~v~a~~yW~~sd 256 (428)
T COG3664 196 GLKDLIQHHS--LGLPLLLTNWNTLTGPRE---PTNGSYVRAAYIMRLLRE---AGSPVDAFGYWTNSD 256 (428)
T ss_pred HHHHHHHhcc--CCCcceeecccccCCCcc---ccCceeehHHHHHHHHHh---cCChhhhhhhhhccc
Confidence 2334444333 699999999998876421 111233331 1122222 245678888998876
No 73
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=93.17 E-value=3.3 Score=44.22 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCC-----CCCccccCCCCCCh--HHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRTWAFNDG-----GYNSLQISPGQFDE--RVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~~~~~~g-----~~~~~~~~pg~~de--~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
.+-.-+.+.|+.++++|+|+|=+-.+... +|... .--..++ -..+.+.+++++|+++||+||+++.
T Consensus 25 Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~--dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 25 GDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVS--DYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred cCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcc--cccccChhhCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 35677888899999999999987433211 01000 0001122 1247899999999999999999875
No 74
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=92.98 E-value=4.8 Score=38.30 Aligned_cols=93 Identities=19% Similarity=0.178 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCccccc
Q 014151 120 KALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVE 199 (430)
Q Consensus 120 ~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~ 199 (430)
..++.++..|+++|++|++.+.. |.. + .......+++.++.|.+-+..++++
T Consensus 46 ~~~~~~~~~~~~~~~kvl~sigg-~~~-~------------------~~~~~~~~~~~r~~fi~~lv~~~~~-------- 97 (253)
T cd06545 46 SELNSVVNAAHAHNVKILISLAG-GSP-P------------------EFTAALNDPAKRKALVDKIINYVVS-------- 97 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcC-CCC-C------------------cchhhhcCHHHHHHHHHHHHHHHHH--------
Confidence 45678899999999999998743 210 0 0011345788888888888888887
Q ss_pred ccCCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEc
Q 014151 200 YRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVG 249 (430)
Q Consensus 200 yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G 249 (430)
|+=+---+-||-.... .+.+..+++++.+.+++. +.++++.
T Consensus 98 ~~~DGIdiDwE~~~~~-------~~~~~~fv~~Lr~~l~~~--~~~lt~a 138 (253)
T cd06545 98 YNLDGIDVDLEGPDVT-------FGDYLVFIRALYAALKKE--GKLLTAA 138 (253)
T ss_pred hCCCceeEEeeccCcc-------HhHHHHHHHHHHHHHhhc--CcEEEEE
Confidence 6555445556543211 356788889988888753 3455554
No 75
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=92.73 E-value=0.27 Score=47.46 Aligned_cols=64 Identities=16% Similarity=0.332 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCC--CCccc------cCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGG--YNSLQ------ISPGQFDERVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~--~~~~~------~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
-.-+.+.|+.++++|+|+|-+-...+.. +.... ..| .| -..+.|.+++++|+++||+||+++.-
T Consensus 3 ~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~--Gt~~d~~~Lv~~~h~~gi~VilD~V~ 74 (316)
T PF00128_consen 3 FRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDP-RF--GTMEDFKELVDAAHKRGIKVILDVVP 74 (316)
T ss_dssp HHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEEST-TT--BHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred HHHHHHhhHHHHHcCCCceecccccccccccccccceeeecccc-cc--chhhhhhhhhhccccccceEEEeeec
Confidence 3456777999999999999984432211 11111 111 12 23678999999999999999998753
No 76
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=92.50 E-value=2.4 Score=45.98 Aligned_cols=143 Identities=16% Similarity=0.248 Sum_probs=76.7
Q ss_pred HHHHHHHHcCCCEEEEccccCC------------CC--Cc---cccCCCCCC------hHHHHHHHHHHHHHHHcCCEEE
Q 014151 81 AMLQAGAKMGLTVCRTWAFNDG------------GY--NS---LQISPGQFD------ERVFKALDHVIVEARKNGVRLL 137 (430)
Q Consensus 81 ~~~~~~~~~G~n~vR~~~~~~g------------~~--~~---~~~~pg~~d------e~~l~~lD~~l~~A~~~Gi~vi 137 (430)
+-|+.++++|+|+|=+-...+- .| .+ +.++ +.|. ....+.|.++|++|+++||+||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4599999999999998432210 01 10 0111 0111 1125789999999999999999
Q ss_pred EeccCCcccCCC--cchh----hhhh---hhhCCCCC--CCCCCC-CCCHHHHHHHHHHHHHHHhccCCcccccccCCCc
Q 014151 138 LSLVNNLQAYGG--KTQY----VNWA---WEEGIGIS--SSNDSF-FFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPT 205 (430)
Q Consensus 138 l~l~~~w~~~gg--~~~y----~~W~---~~~G~~~~--~~~~~f-~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~ 205 (430)
+++.-+ ..++ ...+ +.|. ...|.... .-..++ ..+|.+++.+.+.++..++. |+=|-
T Consensus 247 lDvV~N--H~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e--------~~iDG- 315 (605)
T TIGR02104 247 MDVVYN--HTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKE--------YNIDG- 315 (605)
T ss_pred EEEEcC--CccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHH--------cCCCE-
Confidence 986432 1110 0000 1111 00010000 001112 34688888888888888876 53221
Q ss_pred eeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEE
Q 014151 206 IFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLV 246 (430)
Q Consensus 206 I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV 246 (430)
+ =+++..... ..+++++.+.+|+.+|+..+
T Consensus 316 f-R~D~~~~~~----------~~~~~~~~~~~~~~~p~~~l 345 (605)
T TIGR02104 316 F-RFDLMGIHD----------IETMNEIRKALNKIDPNILL 345 (605)
T ss_pred E-EEechhcCC----------HHHHHHHHHHHHhhCCCeEE
Confidence 1 134443211 23567788888998887544
No 77
>PLN02361 alpha-amylase
Probab=91.75 E-value=0.91 Score=46.47 Aligned_cols=82 Identities=16% Similarity=0.235 Sum_probs=53.0
Q ss_pred CCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCC----CCCc--c-ccCCCCCChHHHHHHHH
Q 014151 52 DGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDG----GYNS--L-QISPGQFDERVFKALDH 124 (430)
Q Consensus 52 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g----~~~~--~-~~~pg~~de~~l~~lD~ 124 (430)
+|..+.+-|+|- -.... .-...+.+.++.++++|+++|=+....+. +|.+ + ...+ .|. ..+.|..
T Consensus 9 ~~~~v~lQ~F~W--~~~~~---~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~-~~G--t~~el~~ 80 (401)
T PLN02361 9 NGREILLQAFNW--ESHKH---DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNS-AYG--SEHLLKS 80 (401)
T ss_pred CCCcEEEEEEec--cCCcc---HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCc-ccC--CHHHHHH
Confidence 567788889982 21111 02467888899999999999988543221 0110 0 0011 111 2467899
Q ss_pred HHHHHHHcCCEEEEecc
Q 014151 125 VIVEARKNGVRLLLSLV 141 (430)
Q Consensus 125 ~l~~A~~~Gi~vil~l~ 141 (430)
+|++|+++||+||+++.
T Consensus 81 li~~~h~~gi~vi~D~V 97 (401)
T PLN02361 81 LLRKMKQYNVRAMADIV 97 (401)
T ss_pred HHHHHHHcCCEEEEEEc
Confidence 99999999999999864
No 78
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=90.99 E-value=9.9 Score=38.28 Aligned_cols=110 Identities=15% Similarity=0.169 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCCC-------Ccccc----C-----------------CCCCChHHHHHHHHH
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRTWAFNDGGY-------NSLQI----S-----------------PGQFDERVFKALDHV 125 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~-------~~~~~----~-----------------pg~~de~~l~~lD~~ 125 (430)
.+.+.+.+.++.|+..++|++.+++..+-+| |.+.. . .|.|. .+.+.++
T Consensus 15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT---~~di~ei 91 (357)
T cd06563 15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYT---QEEIREI 91 (357)
T ss_pred cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceEC---HHHHHHH
Confidence 4578999999999999999999876433233 22210 0 12343 5678899
Q ss_pred HHHHHHcCCEEEEeccCCcccCCCcc----hhhhhhhhhCCCC------C-CCCCCCCCCHHHHHHHHHHHHHHHhc
Q 014151 126 IVEARKNGVRLLLSLVNNLQAYGGKT----QYVNWAWEEGIGI------S-SSNDSFFFDPSIHKYFKHYVKTVLTR 191 (430)
Q Consensus 126 l~~A~~~Gi~vil~l~~~w~~~gg~~----~y~~W~~~~G~~~------~-~~~~~f~~d~~~~~~~~~~~~~lv~R 191 (430)
++.|+++||.||+.+.. +|-.. .|+..... +... . ....--..+|++.+..++.++++++-
T Consensus 92 v~yA~~rgI~VIPEID~----PGH~~a~l~~~pel~~~-~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~~~l 163 (357)
T cd06563 92 VAYAAERGITVIPEIDM----PGHALAALAAYPELGCT-GGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEVAEL 163 (357)
T ss_pred HHHHHHcCCEEEEecCC----chhHHHHHHhCccccCC-CCCCccccccCcCCCccCCCChhHHHHHHHHHHHHHHh
Confidence 99999999999997632 12111 11111100 0000 0 01111245788989999999998886
No 79
>PRK09936 hypothetical protein; Provisional
Probab=90.97 E-value=9.3 Score=37.11 Aligned_cols=59 Identities=12% Similarity=0.177 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
+++++|++.++.++..|++++=+ -|..+-.+ .|... --.|-+.++.|.+.||+|++.|.
T Consensus 35 ~~~~qWq~~~~~~~~~G~~tLiv------QWt~yG~~--~fg~~-~g~La~~l~~A~~~Gl~v~vGL~ 93 (296)
T PRK09936 35 VTDTQWQGLWSQLRLQGFDTLVV------QWTRYGDA--DFGGQ-RGWLAKRLAAAQQAGLKLVVGLY 93 (296)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEE------EeeeccCC--Ccccc-hHHHHHHHHHHHHcCCEEEEccc
Confidence 56899999999999999998876 12222111 12111 23577899999999999999885
No 80
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=90.96 E-value=7 Score=38.94 Aligned_cols=149 Identities=15% Similarity=0.202 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCCC-------Ccccc----------CCCCCChHHHHHHHHHHHHHHHcCCEE
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRTWAFNDGGY-------NSLQI----------SPGQFDERVFKALDHVIVEARKNGVRL 136 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~-------~~~~~----------~pg~~de~~l~~lD~~l~~A~~~Gi~v 136 (430)
.+.+.+.+.++.|+..++|++-+++-.+-+| |.+.. ..|.|. -+.+.++++.|+++||.|
T Consensus 15 ~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT---~~di~elv~yA~~rgI~v 91 (329)
T cd06568 15 FTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYT---QEDYKDIVAYAAERHITV 91 (329)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCC---HHHHHHHHHHHHHcCCEE
Confidence 4678999999999999999999876433233 22211 012354 456889999999999999
Q ss_pred EEeccCCcccCCCcc----hhhhhhhhhCCCCC-------CCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCc
Q 014151 137 LLSLVNNLQAYGGKT----QYVNWAWEEGIGIS-------SSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPT 205 (430)
Q Consensus 137 il~l~~~w~~~gg~~----~y~~W~~~~G~~~~-------~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~ 205 (430)
|+.+.- +|-.. .|+.-.+ .+.... ....--.++|++.+..++.+++++.- +. .+.
T Consensus 92 IPEiD~----PGH~~a~~~~~p~l~~-~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~--------f~-~~~ 157 (329)
T cd06568 92 VPEIDM----PGHTNAALAAYPELNC-DGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAAL--------TP-GPY 157 (329)
T ss_pred EEecCC----cHHHHHHHHhChhhcc-CCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHh--------CC-CCe
Confidence 997632 12111 1221111 110000 00112246788999999999999876 53 333
Q ss_pred eeEEee-cCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEE
Q 014151 206 IFAWEL-INEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLV 246 (430)
Q Consensus 206 I~~wel-~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV 246 (430)
| -+ +-|.... ..+.+..+++++++.+++.. .+++
T Consensus 158 i---HiGgDE~~~~---~~~~~~~f~~~~~~~v~~~G-k~~~ 192 (329)
T cd06568 158 I---HIGGDEAHST---PHDDYAYFVNRVRAIVAKYG-KTPV 192 (329)
T ss_pred E---EEecccCCCC---chHHHHHHHHHHHHHHHHCC-CeEE
Confidence 2 23 3444322 23567788999999998765 3444
No 81
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=90.68 E-value=11 Score=35.45 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCc
Q 014151 116 ERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTI 195 (430)
Q Consensus 116 e~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~ 195 (430)
+..++-+.+.+.+|++.||+.|- |. |.+.|-. -.|++.++.|.+-++..++-
T Consensus 92 ~~aleiM~KaI~LA~dLGIRtIQ-LA-------GYDVYYE----------------~~d~eT~~rFi~g~~~a~~l---- 143 (287)
T COG3623 92 QQALEIMEKAIQLAQDLGIRTIQ-LA-------GYDVYYE----------------EADEETRQRFIEGLKWAVEL---- 143 (287)
T ss_pred HHHHHHHHHHHHHHHHhCceeEe-ec-------cceeeec----------------cCCHHHHHHHHHHHHHHHHH----
Confidence 56888999999999999999973 22 2222211 13788899998877776653
Q ss_pred ccccccCCCceeEEeecCCCCC
Q 014151 196 TGVEYRNDPTIFAWELINEPRC 217 (430)
Q Consensus 196 tg~~yk~~p~I~~wel~NEp~~ 217 (430)
=......++.|++.-|..
T Consensus 144 ----A~~aqV~lAvEiMDtpfm 161 (287)
T COG3623 144 ----AARAQVMLAVEIMDTPFM 161 (287)
T ss_pred ----HHhhccEEEeeecccHHH
Confidence 222346788999987764
No 82
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=90.67 E-value=13 Score=37.44 Aligned_cols=109 Identities=16% Similarity=0.138 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCCCC-------ccccCCC------CCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRTWAFNDGGYN-------SLQISPG------QFDERVFKALDHVIVEARKNGVRLLLSL 140 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~-------~~~~~pg------~~de~~l~~lD~~l~~A~~~Gi~vil~l 140 (430)
.+.+.+++.++.|+...+|++.++.-.+-+|+ .+. ..| .|. -+.+..+++.|+++||.||+.+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt-~~ga~~~~~~YT---~~di~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 15 LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELS-KKGAYSPSEVYT---PEDVKEIVEYARLRGIRVIPEI 90 (348)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhh-hccCcCCCceEC---HHHHHHHHHHHHHcCCEEEEec
Confidence 45789999999999999999998664332342 221 112 344 4678899999999999999976
Q ss_pred cCCcccCCCcc----hhhhhhhhh-------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhc
Q 014151 141 VNNLQAYGGKT----QYVNWAWEE-------GIGISSSNDSFFFDPSIHKYFKHYVKTVLTR 191 (430)
Q Consensus 141 ~~~w~~~gg~~----~y~~W~~~~-------G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R 191 (430)
.. +|-.. .|+.-.... +... ....--.++|++.+..++.++++++-
T Consensus 91 D~----PGH~~a~~~~~p~l~~~~~~~~~~~~~~~-~~~~L~~~~~~t~~fl~~vl~E~~~l 147 (348)
T cd06562 91 DT----PGHTGSWGQGYPELLTGCYAVWRKYCPEP-PCGQLNPTNPKTYDFLKTLFKEVSEL 147 (348)
T ss_pred cC----chhhHHHHHhChhhhCCCCccccccccCC-CCccccCCChhHHHHHHHHHHHHHHh
Confidence 32 11111 111100000 0000 00111235788988899999998886
No 83
>PLN00196 alpha-amylase; Provisional
Probab=90.15 E-value=3.8 Score=42.37 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCC----CCCc---cccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDG----GYNS---LQISPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g----~~~~---~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
....+.+.+..++++|+++|=+....+. +|.+ +...+..|. ..+.|.+++++|+++||+||++..
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fG--t~~elk~Lv~~aH~~GIkVilDvV 113 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYG--NEAQLKSLIEAFHGKGVQVIADIV 113 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCC--CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3566889999999999999887443221 1110 111111221 235789999999999999999864
No 84
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=89.48 E-value=9.2 Score=38.99 Aligned_cols=137 Identities=15% Similarity=0.163 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHcCCCEEEEcc-ccCC--CCCccccCCCCCC----hHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCc
Q 014151 78 RVGAMLQAGAKMGLTVCRTWA-FNDG--GYNSLQISPGQFD----ERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGK 150 (430)
Q Consensus 78 ~~~~~~~~~~~~G~n~vR~~~-~~~g--~~~~~~~~pg~~d----e~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~ 150 (430)
..++..+.+|++|++-|=+-. +-|| -|+.-. ..|+ .-..+-+.++.++|+++||++-+.+.. |+.+ .
T Consensus 82 D~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~---t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~-~DW~--~ 155 (384)
T smart00812 82 DPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKY---SNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL-FDWF--N 155 (384)
T ss_pred CHHHHHHHHHHcCCCeEEeeeeecCCccccCCCC---CCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH-HHhC--C
Confidence 456778889999999776522 1122 122100 0111 013467889999999999999885432 2211 0
Q ss_pred chhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCCCChHHHHHH-
Q 014151 151 TQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSDPSGDTLQDW- 229 (430)
Q Consensus 151 ~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~~w- 229 (430)
+.|.. . .........+....++.+.+...+++|+++ |+. .++=+|...+-.. . .|
T Consensus 156 p~y~~---~--~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~--------Ygp--d~lWfD~~~~~~~------~---~~~ 211 (384)
T smart00812 156 PLYAG---P--TSSDEDPDNWPRFQEFVDDWLPQLRELVTR--------YKP--DLLWFDGGWEAPD------D---YWR 211 (384)
T ss_pred Ccccc---c--cccccccccchhHHHHHHHHHHHHHHHHhc--------CCC--ceEEEeCCCCCcc------c---hhc
Confidence 11110 0 000000111111223333348899999999 965 6665676543111 1 12
Q ss_pred HHHHHHHHHhcCCCC
Q 014151 230 IDEMSAFVKSIDKKH 244 (430)
Q Consensus 230 ~~~~~~~Ir~~dp~~ 244 (430)
..++.+.||++.|+.
T Consensus 212 ~~~l~~~~~~~qP~~ 226 (384)
T smart00812 212 SKEFLAWLYNLSPVK 226 (384)
T ss_pred HHHHHHHHHHhCCCC
Confidence 467888899999987
No 85
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=89.35 E-value=9.9 Score=37.58 Aligned_cols=65 Identities=25% Similarity=0.289 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCCC-------Cccc-c-CC-CCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRTWAFNDGGY-------NSLQ-I-SP-GQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~-------~~~~-~-~p-g~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
.+.+.+.+.++.|+..++|++-+++-.+-+| |.+. . ++ +.|. -+.+.++++.|+++||.||+.+.
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT---~~di~elv~yA~~rgI~vIPEId 89 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYT---QEQIREVVAYARDRGIRVVPEID 89 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccC---HHHHHHHHHHHHHcCCEEEEeec
Confidence 3578999999999999999999876433334 2221 1 11 2455 45678999999999999999763
No 86
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=89.30 E-value=12 Score=37.07 Aligned_cols=71 Identities=17% Similarity=0.328 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEE
Q 014151 172 FFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVT 247 (430)
Q Consensus 172 ~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 247 (430)
+.+++.++.+.++++.++++ .|.|+-. | ++-+|+..+|.........+.+.++++++++.+|+..|+.+|.
T Consensus 140 ~~~~~W~~il~~rl~~l~~k--GfDGvfL-D--~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II 210 (315)
T TIGR01370 140 YWDPEWKAIAFSYLDRVIAQ--GFDGVYL-D--LIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVII 210 (315)
T ss_pred cccHHHHHHHHHHHHHHHHc--CCCeEee-c--cchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 34678888888888888776 5666533 3 5677887777553222234678889999999999999996664
No 87
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=89.17 E-value=0.52 Score=47.74 Aligned_cols=104 Identities=17% Similarity=0.386 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCcccc-CCCCCChHHHHHHHHHHHHHHHcCCEEEEec--cCCcccCCCc--
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQI-SPGQFDERVFKALDHVIVEARKNGVRLLLSL--VNNLQAYGGK-- 150 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~-~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l--~~~w~~~gg~-- 150 (430)
...++..|+.+|++|+.-|=+-+. |-.+|. .|++|| |..++++++.+++.|||+.+.+ |. .||.
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvW----WGiVE~~~p~~yd---Ws~Y~~l~~~vr~~GLk~~~vmsfH~----cGgNvg 83 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVW----WGIVEGEGPQQYD---WSGYRELFEMVRDAGLKLQVVMSFHQ----CGGNVG 83 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEE----HHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-----BSSSTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeE----eeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEeeec----CCCCCC
Confidence 358999999999999999887332 334555 488998 8889999999999999996654 43 2332
Q ss_pred ---c-hhhhhhhhhCC--CC--C---CC-C----CCCCCCHHHHHHHHHHHHHHHhc
Q 014151 151 ---T-QYVNWAWEEGI--GI--S---SS-N----DSFFFDPSIHKYFKHYVKTVLTR 191 (430)
Q Consensus 151 ---~-~y~~W~~~~G~--~~--~---~~-~----~~f~~d~~~~~~~~~~~~~lv~R 191 (430)
. ..|.|..+.|. .+ + +. . .-.+.... .+.|.++.+.+.++
T Consensus 84 D~~~IpLP~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~ 139 (402)
T PF01373_consen 84 DDCNIPLPSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDN 139 (402)
T ss_dssp SSSEB-S-HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHH
T ss_pred CccCCcCCHHHHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHH
Confidence 1 24678754211 10 0 00 0 01123333 78888888888877
No 88
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=89.16 E-value=17 Score=36.66 Aligned_cols=173 Identities=21% Similarity=0.286 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHhccCCcccccccCCCceeEEee--cCCCCCCCCC---------ChHHHHHHHHH-HHHHHHhcCC-
Q 014151 176 SIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWEL--INEPRCMSDP---------SGDTLQDWIDE-MSAFVKSIDK- 242 (430)
Q Consensus 176 ~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel--~NEp~~~~~~---------~~~~~~~w~~~-~~~~Ir~~dp- 242 (430)
.+-+.+.+|+-++.+. |..+ .|..|.| .|||....+. .++..+++++. +..++++-..
T Consensus 226 ~yhqtya~YfvkFlea--------Y~~~-gi~FWglt~qNEPstG~d~~~k~Qtl~ftae~qRdFik~dLGPaLa~s~~~ 296 (518)
T KOG2566|consen 226 IYHQTYARYFVKFLEA--------YAKH-GIQFWGLTTQNEPSTGSDKKWKWQTLGFTAETQRDFIKKDLGPALASSKTT 296 (518)
T ss_pred hhHHHHHHHHHHHHHH--------HHhc-CceEEeecccCCCCcCcccCCceeecccCHHHHHHHHHHhcchhhhcCCcC
Confidence 4566677777777777 7766 4555766 8999876542 24556666553 4444444322
Q ss_pred -CCEEEEccCCccCCCCCCCcccCccchhhccCcchhhccCCCCcceEEeeecCCCCCCCcchhhhHHHHHHHHHHHHHh
Q 014151 243 -KHLVTVGLEGFYGPKSPKRLTVNPEMWASALGSDFIRNSNNDNIDFASVHIYPDHWFHDLEFEDDLKFVTKWMLSHIED 321 (430)
Q Consensus 243 -~~lV~~G~~g~~~~~~~~~~~~np~~w~~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~ 321 (430)
+.-|.+=.++ + .|-..|+..- +....+.+.++=+.+|.|.+...+. .++..
T Consensus 297 knvkllilDD~--------R--g~LP~Wadtv---lnDpeAakYv~GIaVHwY~df~~pa---------------~~L~e 348 (518)
T KOG2566|consen 297 KNVKLLILDDQ--------R--GLLPHWADTV---LNDPEAAKYVHGIAVHWYQDFLEPA---------------KHLDE 348 (518)
T ss_pred CceEEEEecCC--------c--cCCCccchhh---ccChhhhhhccceEEEeeccccChh---------------hhhhh
Confidence 2223321111 1 1212566421 1111244677778999998742221 11222
Q ss_pred hh-hcCCCcEEEEecCCCCCCC---CCChhHH-HHHHHHHHHHHHHHHhcCCCcccceeeeeccCC--CccCCCCce
Q 014151 322 GD-KELNKPVFFTEYGLSNLIK---GFEPSLR-DKLYKTILDIVYKSAKRKRSGAGALIWQLFVEG--MEEYNDDFG 391 (430)
Q Consensus 322 a~-~~~gkPv~v~EfG~~~~~~---~~~~~~r-~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~~--~~~~~dg~~ 391 (430)
.. +-.++=++-+|-.+..... .+..=.| .+|-.+++..+.. =+.||.=|.+.-+. =+.|-++|.
T Consensus 349 Th~~hP~~fifgTEAc~Gy~~~d~v~~Gswdrae~yasdii~dlnn------~vtGWtdwNl~Ld~~GGP~wv~nfv 419 (518)
T KOG2566|consen 349 THRKHPNTFIFGTEACAGYKSKDGVDLGSWDRAEQYASDIITDLNN------HVTGWTDWNLILDAQGGPNWVSNFV 419 (518)
T ss_pred HHhhCCCeEEEeehhccccccccCccccchhhHHHHHHHHHHhhhh------hccceeeeeeEecCcCCchhHhccC
Confidence 22 1245556677765544321 1111123 3444445444432 27899999997553 367877775
No 89
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=89.06 E-value=1.8 Score=43.26 Aligned_cols=153 Identities=16% Similarity=0.212 Sum_probs=85.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCCCC-------ccccCCC---------CCChHHHHHHHHHHHHHHHcCCEEE
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRTWAFNDGGYN-------SLQISPG---------QFDERVFKALDHVIVEARKNGVRLL 137 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~-------~~~~~pg---------~~de~~l~~lD~~l~~A~~~Gi~vi 137 (430)
.+.+.+++.++.|+..++|++-++.-.+-+|+ .+. ..| .|. -+.+.++++.|+++||.||
T Consensus 15 ~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~-~~ga~~~~~~~~~yT---~~di~~lv~yA~~~gI~VI 90 (351)
T PF00728_consen 15 FSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELT-EKGAYRPSDAGGYYT---KEDIRELVAYAKERGIEVI 90 (351)
T ss_dssp B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHH-HTTTESTTCTESEBE---HHHHHHHHHHHHHTT-EEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCcccc-ccCccccccccccCC---HHHHHHHHHHHHHcCCcee
Confidence 46789999999999999999998764432332 111 112 343 3678899999999999999
Q ss_pred EeccCCcccCCCcchhhhhhhhhCCC---C--------CCC---CCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCC
Q 014151 138 LSLVNNLQAYGGKTQYVNWAWEEGIG---I--------SSS---NDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRND 203 (430)
Q Consensus 138 l~l~~~w~~~gg~~~y~~W~~~~G~~---~--------~~~---~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~ 203 (430)
+.+.. +|-+.....+....+.. . ... ..-..++|++.+..++.+++++.- +. .
T Consensus 91 Peid~----PGH~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~--------f~-~ 157 (351)
T PF00728_consen 91 PEIDT----PGHAEAWLKAYPELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADL--------FP-S 157 (351)
T ss_dssp EEEEE----SSS-HHHHHHHHHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHH--------HT-S
T ss_pred eeccC----chHHHHHHHhCchhhccccccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhh--------CC-C
Confidence 97632 22222111111111110 0 000 011246789999999999999987 54 3
Q ss_pred CceeEEee-cCCCCCCCCC---------------C-hHHHHHHHHHHHHHHHhcCCCCEEE
Q 014151 204 PTIFAWEL-INEPRCMSDP---------------S-GDTLQDWIDEMSAFVKSIDKKHLVT 247 (430)
Q Consensus 204 p~I~~wel-~NEp~~~~~~---------------~-~~~~~~w~~~~~~~Ir~~dp~~lV~ 247 (430)
+.| -+ +-|....... . .+.+..+++++.+.+++.... ++.
T Consensus 158 ~~i---HiGgDEv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~v~~~g~~-~~~ 214 (351)
T PF00728_consen 158 KYI---HIGGDEVNYNCWNNSPECQAWMKQNGLTDPNDLFQYFVNRLADIVKKHGKK-PII 214 (351)
T ss_dssp SEE---EEE-TSTTTHHHHCHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHTTSE-EEE
T ss_pred CeE---EeCCcccccccccCCHHHhhHHhhcCCchHHHHHHHHHHHHHHHHHhcCCc-EEE
Confidence 332 23 3444311000 0 123445678899989987666 444
No 90
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=88.98 E-value=1.9 Score=50.23 Aligned_cols=102 Identities=12% Similarity=0.165 Sum_probs=64.3
Q ss_pred CCCCcEEEeCCeEEECC-eEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEcccc-CCC----CC---cc
Q 014151 37 PEMGFVTRNGTHFMLDG-KALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFN-DGG----YN---SL 107 (430)
Q Consensus 37 ~~~gfv~~~g~~f~~~G-~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~-~g~----~~---~~ 107 (430)
++.+++.|. -.+.+|| +.+.+.|++..-.-..... ....|++.|+.++++|+|+|-+-.+- .|. |. -+
T Consensus 94 ~~~~y~~V~-P~L~i~~~~~lPl~~i~iqTvlsK~mG--~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl 170 (1464)
T TIGR01531 94 TGGGYFVVL-PMLYINADKFLPLDSIALQTVLAKLLG--PLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQL 170 (1464)
T ss_pred CCceEEEeC-CeeEECCCcccCcCceeeeeehhhhcC--CHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchh
Confidence 344555554 7788888 8787888885322111111 35789999999999999999984432 221 10 01
Q ss_pred ccCCCCCC-hHHHHHHHHHHHHHHHc-CCEEEEecc
Q 014151 108 QISPGQFD-ERVFKALDHVIVEARKN-GVRLLLSLV 141 (430)
Q Consensus 108 ~~~pg~~d-e~~l~~lD~~l~~A~~~-Gi~vil~l~ 141 (430)
+..|--+. +...+.+.++++.|++. ||++|++..
T Consensus 171 ~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV 206 (1464)
T TIGR01531 171 QLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIV 206 (1464)
T ss_pred hcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 11221110 12457789999999985 999999864
No 91
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=88.97 E-value=1.8 Score=42.93 Aligned_cols=158 Identities=16% Similarity=0.184 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccC----------------------C----CCCccc-------cCCCCCChHHHH
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRTWAFND----------------------G----GYNSLQ-------ISPGQFDERVFK 120 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~~~~~~----------------------g----~~~~~~-------~~pg~~de~~l~ 120 (430)
++-+++++.|+.|+=.|+|..=.++-.+ | .|..+. |-|..+-+...+
T Consensus 16 WdW~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~ 95 (333)
T PF05089_consen 16 WDWERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAE 95 (333)
T ss_dssp --HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHH
Confidence 5789999999999999999876644111 0 011111 112233345555
Q ss_pred HHHHHHHHHHHcCCEEEEeccCCcccCCCc-chhh--------hhhhhhCCCCCCCCCCC--CCCHHHHHHHHHHHHHHH
Q 014151 121 ALDHVIVEARKNGVRLLLSLVNNLQAYGGK-TQYV--------NWAWEEGIGISSSNDSF--FFDPSIHKYFKHYVKTVL 189 (430)
Q Consensus 121 ~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~-~~y~--------~W~~~~G~~~~~~~~~f--~~d~~~~~~~~~~~~~lv 189 (430)
.=.++++..++.||..|++-+..- ..... ..|| .|.. . ....| .+||-..+.-+.++++..
T Consensus 96 Lq~kIl~RmreLGm~PVLPaF~G~-VP~~~~~~~P~a~i~~~~~W~~---f----~~~~~L~P~dplF~~i~~~F~~~q~ 167 (333)
T PF05089_consen 96 LQKKILDRMRELGMTPVLPAFAGH-VPRAFKRKYPNANITRQGNWNG---F----CRPYFLDPTDPLFAEIAKLFYEEQI 167 (333)
T ss_dssp HHHHHHHHHHHHT-EEEEE--S-E-E-TTHHHHSTT--EE---EETT---E----E--EEE-SS--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccCCCcCCC-CChHHHhcCCCCEEeeCCCcCC---C----CCCceeCCCCchHHHHHHHHHHHHH
Confidence 667999999999999999744210 00000 1111 1211 0 00111 256777777888888888
Q ss_pred hccCCcccccccCCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCE-EEEc
Q 014151 190 TRKNTITGVEYRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHL-VTVG 249 (430)
Q Consensus 190 ~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~l-V~~G 249 (430)
+. |+ ...+.+-|..||-..... ..+-+.+-.+.+.+.+++.||+.. |..|
T Consensus 168 ~~--------yG-~~~~Y~~D~FnE~~p~~~-~~~~l~~~s~~v~~am~~~dp~AvWvmQg 218 (333)
T PF05089_consen 168 KL--------YG-TDHIYAADPFNEGGPPSG-DPEYLANVSKAVYKAMQAADPDAVWVMQG 218 (333)
T ss_dssp HH--------H----SEEE--TTTTS---TT-S---HHHHHHHHHHHHHHH-TT-EEEEEE
T ss_pred Hh--------cC-CCceeCCCccCCCCCCCC-chHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 88 98 668999999999776543 234477778888899999999864 5544
No 92
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=88.83 E-value=16 Score=37.32 Aligned_cols=177 Identities=13% Similarity=0.201 Sum_probs=91.1
Q ss_pred EEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCcccc----CCC--CCChHHH-HHHHHHHHHH
Q 014151 57 YVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQI----SPG--QFDERVF-KALDHVIVEA 129 (430)
Q Consensus 57 ~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~----~pg--~~de~~l-~~lD~~l~~A 129 (430)
.+.|.|.|+..... .+++.+.+.++.++++|++.+=+ .+| |..-.. .-| ..|++.| +.|..+++.+
T Consensus 41 ~pv~~nsW~~~~~d---~~e~~i~~~a~~~~~~G~e~fvi---DDG-W~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i 113 (394)
T PF02065_consen 41 PPVGWNSWEAYYFD---ITEEKILELADAAAELGYEYFVI---DDG-WFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYI 113 (394)
T ss_dssp --EEEESHHHHTTG-----HHHHHHHHHHHHHHT-SEEEE----SS-SBCTESTTTSTTSBECBBTTTSTTHHHHHHHHH
T ss_pred CceEEEcccccCcC---CCHHHHHHHHHHHHHhCCEEEEE---cCc-cccccCCCcccCCceeEChhhhCCcHHHHHHHH
Confidence 35678865433222 46899999999999999996555 443 532111 012 1233333 3588999999
Q ss_pred HHcCCEEEEeccCCc--ccCCCcchhhhhhhhhC-CCCCCCCCC---CCCCHHHHHHHHHHHHHHHhccCCcccccccCC
Q 014151 130 RKNGVRLLLSLVNNL--QAYGGKTQYVNWAWEEG-IGISSSNDS---FFFDPSIHKYFKHYVKTVLTRKNTITGVEYRND 203 (430)
Q Consensus 130 ~~~Gi~vil~l~~~w--~~~gg~~~y~~W~~~~G-~~~~~~~~~---f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~ 203 (430)
++.||+.=|=+...- .+.--...+|+|....+ .......+. -+++|++++...+.+..++.. ++ -
T Consensus 114 ~~~Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~--------~g-i 184 (394)
T PF02065_consen 114 HSLGMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLRE--------WG-I 184 (394)
T ss_dssp HHTT-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHH--------TT--
T ss_pred HHCCCeEEEEeccccccchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHh--------cC-C
Confidence 999999966331100 00000123567764311 111011111 257899999999999888776 32 1
Q ss_pred CceeEEeecCCCCCCCCC-ChHHHHHHH---HHHHHHHHhcCCCCEEEEcc
Q 014151 204 PTIFAWELINEPRCMSDP-SGDTLQDWI---DEMSAFVKSIDKKHLVTVGL 250 (430)
Q Consensus 204 p~I~~wel~NEp~~~~~~-~~~~~~~w~---~~~~~~Ir~~dp~~lV~~G~ 250 (430)
..|- ||-.-........ ..+...+.+ .++.+.||+.-|+.+|-.-+
T Consensus 185 dYiK-~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~v~iE~Cs 234 (394)
T PF02065_consen 185 DYIK-WDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPDVLIENCS 234 (394)
T ss_dssp SEEE-EE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTTSEEEE-B
T ss_pred CEEE-eccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCcEEEecc
Confidence 1232 6653333222111 112333333 36777889999999886543
No 93
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.82 E-value=2.2 Score=43.90 Aligned_cols=158 Identities=10% Similarity=0.096 Sum_probs=97.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCC--------------------------CCccc---cCCCCCChH----HHH
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRTWAFNDGG--------------------------YNSLQ---ISPGQFDER----VFK 120 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~--------------------------~~~~~---~~pg~~de~----~l~ 120 (430)
+.-+++++.++.|+=+|+|.+=.|.-.+.- |.++- .-.|-..+. .+-
T Consensus 75 W~w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~ 154 (666)
T KOG2233|consen 75 WGWEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLL 154 (666)
T ss_pred echHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHH
Confidence 357999999999999999988775311100 11110 001112221 222
Q ss_pred HHHHHHHHHHHcCCEEEEeccCCcccCCCcch-------------hhhhhhhhCCCCCCCCCCC---CCCHHHHHHHHHH
Q 014151 121 ALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQ-------------YVNWAWEEGIGISSSNDSF---FFDPSIHKYFKHY 184 (430)
Q Consensus 121 ~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~-------------y~~W~~~~G~~~~~~~~~f---~~d~~~~~~~~~~ 184 (430)
.-.++|+...+.||.++++-+.. -.+. .+.|-+- +. ...-.+ -.||-.++.=..+
T Consensus 155 LqkrIidrm~~lGmTpvLPaFaG-----~VP~al~rlfPesnf~rl~rWn~f---~s-~~~C~l~v~P~dplF~eIgs~F 225 (666)
T KOG2233|consen 155 LQKRIIDRMLELGMTPVLPAFAG-----HVPDALERLFPESNFTRLPRWNNF---TS-RYSCMLLVSPFDPLFQEIGSTF 225 (666)
T ss_pred HHHHHHHHHHHcCCCccchhhcc-----ccHHHHHHhCchhceeeccccCCC---Cc-ceeeeEEccCCcchHHHHHHHH
Confidence 33589999999999999875431 1111 1112100 00 000011 2466677777789
Q ss_pred HHHHHhccCCcccccccCCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEc
Q 014151 185 VKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVG 249 (430)
Q Consensus 185 ~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G 249 (430)
+++..+. |+...+|..=|..||...+.. .++-++.-..++....|++|++..-.+.
T Consensus 226 lr~~~ke--------fG~~tniy~~DpFNE~~Pp~s-epey~~staaAiyesm~kvdknaVWllQ 281 (666)
T KOG2233|consen 226 LRHQIKE--------FGGVTNIYSADPFNEILPPES-EPEYVKSTAAAIYESMKKVDKNAVWLLQ 281 (666)
T ss_pred HHHHHHH--------hCCcccccccCcccccCCCCC-ChHHHHHHHHHHHHHHhccCcceEEeee
Confidence 9999998 998889999999999776543 3455666667777788999999765554
No 94
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=86.68 E-value=20 Score=38.87 Aligned_cols=160 Identities=10% Similarity=0.134 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccC----CCC--Ccc-ccCC-CCCChHHHHHHHHHHHHHHHcCCEEEEeccCCccc
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFND----GGY--NSL-QISP-GQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQA 146 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~----g~~--~~~-~~~p-g~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~ 146 (430)
..+..++.+..+++||+|+|-+....+ ++| ... .-+| .+|. .-+.|.++||+|.++||-|||+..-+ .
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryG--tPedfk~fVD~aH~~GIgViLD~V~~--H 238 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYG--TPEDFKALVDAAHQAGIGVILDWVPN--H 238 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCC--CHHHHHHHHHHHHHcCCEEEEEecCC--c
Confidence 467889999999999999999865432 223 111 0011 1221 13467899999999999999986531 2
Q ss_pred CCCcchhhhhhhhhCCCCC-------------CCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEE----
Q 014151 147 YGGKTQYVNWAWEEGIGIS-------------SSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAW---- 209 (430)
Q Consensus 147 ~gg~~~y~~W~~~~G~~~~-------------~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~w---- 209 (430)
++--..|..... |.... .....++..++++..+..-...-++. =-+-|.++-.-++++-.
T Consensus 239 F~~d~~~L~~fd--g~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~-yHiDGlRvDAV~smly~d~~~ 315 (628)
T COG0296 239 FPPDGNYLARFD--GTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEE-YHIDGLRVDAVASMLYLDYSR 315 (628)
T ss_pred CCCCcchhhhcC--CccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHH-hCCcceeeehhhhhhccchhh
Confidence 221111221111 11110 01122233466776666555555554 11222222222233222
Q ss_pred ----eecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCC
Q 014151 210 ----ELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKH 244 (430)
Q Consensus 210 ----el~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~ 244 (430)
.+-||..... .-...++++++.+.|+..-|..
T Consensus 316 ~~~~~~~n~~ggr~---n~~a~efl~~~n~~i~~~~pg~ 351 (628)
T COG0296 316 AEGEWVPNEYGGRE---NLEAAEFLRNLNSLIHEEEPGA 351 (628)
T ss_pred hhhcccccccCCcc---cHHHHHHhhhhhhhhcccCCCc
Confidence 2334443321 2345678888888898887766
No 95
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=86.62 E-value=1.5 Score=43.88 Aligned_cols=95 Identities=18% Similarity=0.166 Sum_probs=63.8
Q ss_pred HHHHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHhccCCcccccccC
Q 014151 124 HVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFD-PSIHKYFKHYVKTVLTRKNTITGVEYRN 202 (430)
Q Consensus 124 ~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d-~~~~~~~~~~~~~lv~R~n~~tg~~yk~ 202 (430)
..+++|+++|++|+-+++..|. ++. .|.. .+..+ ++.+..+.+-+-.|+.. |+=
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~--~~~----~~~~-----------~lL~~~~~~~~~~a~kLv~lak~--------yGf 104 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWT--GQV----EWLE-----------DFLKKDEDGSFPVADKLVEVAKY--------YGF 104 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCC--Cch----HHHH-----------HHhccCcccchHHHHHHHHHHHH--------hCC
Confidence 4589999999999999876653 222 2322 22334 66677777888888888 876
Q ss_pred CCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEE
Q 014151 203 DPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVT 247 (430)
Q Consensus 203 ~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 247 (430)
+--. +...|.+. .....+.+.+|++++.+.+++..|+..|.
T Consensus 105 DGw~--iN~E~~~~--~~~~~~~l~~F~~~L~~~~~~~~~~~~v~ 145 (339)
T cd06547 105 DGWL--INIETELG--DAEKAKRLIAFLRYLKAKLHENVPGSLVI 145 (339)
T ss_pred CceE--eeeeccCC--cHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Confidence 6433 33333331 11135789999999999999998886663
No 96
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=86.56 E-value=2.7 Score=44.98 Aligned_cols=64 Identities=23% Similarity=0.460 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCC-----CCCc---cccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDG-----GYNS---LQISPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g-----~~~~---~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
+-.-+.+.|+.++++|+++|=+-.+... +|.. ....| .| -..+.|++++++|+++||+||+++.
T Consensus 31 dl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~-~~--Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 31 DLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDP-TY--GTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred CHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCc-cc--CCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 5667788899999999999987443210 1100 00111 11 1246899999999999999999875
No 97
>PRK03705 glycogen debranching enzyme; Provisional
Probab=86.49 E-value=1.6 Score=47.57 Aligned_cols=59 Identities=20% Similarity=0.491 Sum_probs=39.3
Q ss_pred HHHHHHHcCCCEEEEccccC-C--------------CCCc---cccCCCCCC---hHHHHHHHHHHHHHHHcCCEEEEec
Q 014151 82 MLQAGAKMGLTVCRTWAFND-G--------------GYNS---LQISPGQFD---ERVFKALDHVIVEARKNGVRLLLSL 140 (430)
Q Consensus 82 ~~~~~~~~G~n~vR~~~~~~-g--------------~~~~---~~~~pg~~d---e~~l~~lD~~l~~A~~~Gi~vil~l 140 (430)
.|+.++++|+|+|=+-...+ . +|.+ +.++| .|. +...+.|.++|++|+++||+||+++
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~-~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDP-AYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccc-ccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 48999999999999843211 0 0111 11111 222 1346789999999999999999986
Q ss_pred c
Q 014151 141 V 141 (430)
Q Consensus 141 ~ 141 (430)
.
T Consensus 263 V 263 (658)
T PRK03705 263 V 263 (658)
T ss_pred c
Confidence 4
No 98
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=86.40 E-value=4.5 Score=39.41 Aligned_cols=100 Identities=16% Similarity=0.273 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCccc---CCCcc
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQA---YGGKT 151 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~---~gg~~ 151 (430)
+.+++.+.-+.+++.|+|.|=+ ++. -..+....++.++.+.++.+..+.+||+|.|++. +.. .||.+
T Consensus 55 ~~~R~~~YARllASiGINgvvl---NNV-----Na~~~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvn--FasP~~lggL~ 124 (328)
T PF07488_consen 55 DLTRYRDYARLLASIGINGVVL---NNV-----NANPKLLTPEYLDKVARLADVFRPYGIKVYLSVN--FASPIELGGLP 124 (328)
T ss_dssp --HHHHHHHHHHHHTT--EEE----S-S-----S--CGGGSTTTHHHHHHHHHHHHHTT-EEEEEE---TTHHHHTTS-S
T ss_pred chhHHHHHHHHHhhcCCceEEe---ccc-----ccChhhcCHHHHHHHHHHHHHHhhcCCEEEEEee--ccCCcccCCcC
Confidence 5689999999999999999887 321 1122334567799999999999999999999863 211 12221
Q ss_pred hhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeec
Q 014151 152 QYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELI 212 (430)
Q Consensus 152 ~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~ 212 (430)
..--.||++++.+++-.++| |+.-|-.-++-+-
T Consensus 125 -----------------TaDPld~~V~~WW~~k~~eI-----------Y~~IPDfgGflVK 157 (328)
T PF07488_consen 125 -----------------TADPLDPEVRQWWKDKADEI-----------YSAIPDFGGFLVK 157 (328)
T ss_dssp --------------------TTSHHHHHHHHHHHHHH-----------HHH-TT--EEEE-
T ss_pred -----------------cCCCCCHHHHHHHHHHHHHH-----------HHhCCCccceEEE
Confidence 01124789988888888887 5556666677663
No 99
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=86.10 E-value=2.8 Score=44.76 Aligned_cols=167 Identities=19% Similarity=0.251 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccC-C----CCCc---cccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCccc
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFND-G----GYNS---LQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQA 146 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~-g----~~~~---~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~ 146 (430)
+-.-+.+.|+.++++|+|+|=+-.+.. . .|.. ....| .| -..+.|.+++++|+++||+||+++.-+ .
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~-~~--Gt~~~~~~lv~~ah~~gi~vilD~v~N--H 99 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINP-LF--GTMADFEELVSEAKKRNIKIMLDMVFN--H 99 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCc-cc--CCHHHHHHHHHHHHHCCCEEEEEECcc--c
Confidence 566788889999999999998743311 0 1100 01111 11 135789999999999999999987532 0
Q ss_pred CCC-----------cchhhhhh---hhhCCCCC---------------------------CCCCCCCCCHHHHHHHHHHH
Q 014151 147 YGG-----------KTQYVNWA---WEEGIGIS---------------------------SSNDSFFFDPSIHKYFKHYV 185 (430)
Q Consensus 147 ~gg-----------~~~y~~W~---~~~G~~~~---------------------------~~~~~f~~d~~~~~~~~~~~ 185 (430)
.+. ...|..|. ...|.+.. ....--+.+|++++.+.+.+
T Consensus 100 ~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~v~~~i~~~~ 179 (543)
T TIGR02403 100 TSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQADLNWENPEVREELKDVV 179 (543)
T ss_pred cccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCCcCCccCCCCHHHHHHHHHHH
Confidence 110 11122221 00010000 00111256799999999988
Q ss_pred HHHHhccCCcccccccCCCceeEE-eecCCCCC---CCCCChHHHHHHHHHHHHHHHhcCCCCEEEEcc
Q 014151 186 KTVLTRKNTITGVEYRNDPTIFAW-ELINEPRC---MSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGL 250 (430)
Q Consensus 186 ~~lv~R~n~~tg~~yk~~p~I~~w-el~NEp~~---~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~ 250 (430)
+..+++ .+.|.++---..|.-. .+.++|.. ....+.+...+|++++.+.+++ .|+ .+++|.
T Consensus 180 ~~W~~~--giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~-~~lvgE 244 (543)
T TIGR02403 180 NFWRDK--GVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFG-DND-SVTVGE 244 (543)
T ss_pred HHHHHc--CCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhc-cCC-eEEEEE
Confidence 888864 5555444111111000 01122210 0001234567889999888887 665 456664
No 100
>PLN02877 alpha-amylase/limit dextrinase
Probab=85.54 E-value=26 Score=39.95 Aligned_cols=120 Identities=16% Similarity=0.261 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHcCCEEEEecc-CCcccCCCc-------chh-hhhh---hhhCCCCCCC--CCCC-CCCHHHHHHHH
Q 014151 118 VFKALDHVIVEARKNGVRLLLSLV-NNLQAYGGK-------TQY-VNWA---WEEGIGISSS--NDSF-FFDPSIHKYFK 182 (430)
Q Consensus 118 ~l~~lD~~l~~A~~~Gi~vil~l~-~~w~~~gg~-------~~y-~~W~---~~~G~~~~~~--~~~f-~~d~~~~~~~~ 182 (430)
....+.++|+.|.++||+||+++. ||-.. +|. +.. +.|. ...|. .... ..+. -.++-+++.+.
T Consensus 464 RI~efk~mV~~lH~~GI~VImDVVyNHt~~-~g~~~~~s~ld~~vP~YY~r~~~~G~-~~ns~c~n~~Ase~~mvrklIl 541 (970)
T PLN02877 464 RIIEFRKMVQALNRIGLRVVLDVVYNHLHS-SGPFDENSVLDKIVPGYYLRRNSDGF-IENSTCVNNTASEHYMVDRLIV 541 (970)
T ss_pred hHHHHHHHHHHHHHCCCEEEEEECCccccC-CCCcchhhcccCCCCCceEEECCCCC-cccCCccCCCccCCHHHHHHHH
Confidence 356789999999999999999864 32111 111 000 1111 11111 0000 0011 12255677777
Q ss_pred HHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEccCCc
Q 014151 183 HYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGLEGF 253 (430)
Q Consensus 183 ~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~ 253 (430)
+-++.-++. |+=| =+=++|+..-... .-...+..++++....+..|...++.+| |||
T Consensus 542 Dsl~yW~~e--------y~VD--GFRFDlmg~i~~~---tm~~~~~~L~~i~~~~~~~dg~~i~lyG-EgW 598 (970)
T PLN02877 542 DDLLNWAVN--------YKVD--GFRFDLMGHLMKR---TMVRAKDALQSLTLERDGVDGSSIYLYG-EGW 598 (970)
T ss_pred HHHHHHHHH--------hCCC--EEEEEccccccHH---HHHHHHHHHHHHhhhhcccCCCceEEEE-eCC
Confidence 888887776 6433 1226777654321 1123344455555555555645566777 576
No 101
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=85.39 E-value=1.6 Score=45.89 Aligned_cols=66 Identities=18% Similarity=0.216 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCC---C-CCccccC----------CCCCChH--HHHHHHHHHHHHHHcCCEEEEe
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDG---G-YNSLQIS----------PGQFDER--VFKALDHVIVEARKNGVRLLLS 139 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g---~-~~~~~~~----------pg~~de~--~l~~lD~~l~~A~~~Gi~vil~ 139 (430)
...+.+-|+.++++|+++|=+-..... . +....+. +|..|+. ..+.|.+++++|+++||+||++
T Consensus 21 ~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D 100 (479)
T PRK09441 21 WNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYAD 100 (479)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEE
Confidence 345778899999999998877332111 0 0011110 0111211 3567999999999999999998
Q ss_pred cc
Q 014151 140 LV 141 (430)
Q Consensus 140 l~ 141 (430)
+.
T Consensus 101 ~V 102 (479)
T PRK09441 101 VV 102 (479)
T ss_pred EC
Confidence 74
No 102
>PLN02784 alpha-amylase
Probab=84.88 E-value=5.2 Score=44.59 Aligned_cols=83 Identities=16% Similarity=0.261 Sum_probs=53.3
Q ss_pred CCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCC----CCCcc---ccCCCCCChHHHHHHHH
Q 014151 52 DGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDG----GYNSL---QISPGQFDERVFKALDH 124 (430)
Q Consensus 52 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g----~~~~~---~~~pg~~de~~l~~lD~ 124 (430)
+|..+.+-|+|-+ .+..+ . -...+.+.++.++++|+++|=+...... +|.+. ...+ .|. ..+.|..
T Consensus 500 ~~~eVmlQgF~Wd-s~~dg--~-w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds-~yG--T~~ELk~ 572 (894)
T PLN02784 500 SGFEILCQGFNWE-SHKSG--R-WYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNS-RYG--TIDELKD 572 (894)
T ss_pred CCceEEEEeEEcC-cCCCC--c-hHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCc-CcC--CHHHHHH
Confidence 5678888999822 11111 1 1467888899999999999988543221 11100 0000 111 2457899
Q ss_pred HHHHHHHcCCEEEEecc
Q 014151 125 VIVEARKNGVRLLLSLV 141 (430)
Q Consensus 125 ~l~~A~~~Gi~vil~l~ 141 (430)
+|++|+++||+||+++.
T Consensus 573 LI~a~H~~GIkVIlDiV 589 (894)
T PLN02784 573 LVKSFHEVGIKVLGDAV 589 (894)
T ss_pred HHHHHHHCCCEEEEEEC
Confidence 99999999999999864
No 103
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=84.13 E-value=20 Score=39.18 Aligned_cols=240 Identities=13% Similarity=0.194 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCC----CCCc----cccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCC-ccc
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDG----GYNS----LQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNN-LQA 146 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g----~~~~----~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~-w~~ 146 (430)
.+.+...|+.++++|+|+|=+-+|++. .++. ...-|++ .+.|+.+-..+ +.++|++|.-=+... ++.
T Consensus 333 ~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r--~d~f~~~aw~l--~~r~~v~v~AWmp~~~~~~ 408 (671)
T PRK14582 333 DRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMR--ADLFNRVAWQL--RTRAGVNVYAWMPVLSFDL 408 (671)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccc--cCCcCHHHHHH--HHhhCCEEEEeccceeecc
Confidence 467889999999999999998787642 1211 1112332 22333433444 889999985311100 100
Q ss_pred CCCcchhhhhhhhhCCCCCCCCCCC-----CCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEe-----------
Q 014151 147 YGGKTQYVNWAWEEGIGISSSNDSF-----FFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWE----------- 210 (430)
Q Consensus 147 ~gg~~~y~~W~~~~G~~~~~~~~~f-----~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~we----------- 210 (430)
.-..+.-..+. ..+.+. ..+.++ .-+|++++..++..+.++.+ .++.|+.|-|+..+--||
T Consensus 409 ~~~~~~~~~~~-~~~~~~-~~~~~~~~rl~P~~pe~r~~i~~i~~dla~~-~~~dGilf~Dd~~l~d~ed~s~~a~~~~~ 485 (671)
T PRK14582 409 DPTLPRVKRLD-TGEGKA-QIHPEQYRRLSPFDDRVRAQVGMLYEDLAGH-AAFDGILFHDDAVLSDYEDASAPAITAYQ 485 (671)
T ss_pred CCCcchhhhcc-ccCCcc-ccCCCCCcCCCCCCHHHHHHHHHHHHHHHHh-CCCceEEecccccccccccCCHHHHHHHH
Confidence 00000000010 000000 001112 23689999999999999886 679999998886554433
Q ss_pred ---ecCCCCCCCCCChHHHHHH-----------HHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCcc--chhhccC
Q 014151 211 ---LINEPRCMSDPSGDTLQDW-----------IDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPE--MWASALG 274 (430)
Q Consensus 211 ---l~NEp~~~~~~~~~~~~~w-----------~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~--~w~~~~g 274 (430)
|......- ..+++.+.+| ..++++.+|...|..+.|.. ..|... -.+|. .|..+.=
T Consensus 486 ~~g~~~~~~~~-~~~~~~~~~wt~~k~~~l~~f~~~l~~~v~~~~~~~~~tar--ni~a~~-----~l~p~~e~w~aQ~l 557 (671)
T PRK14582 486 QAGFSGSLSEI-RQNPEQFKQWTRFKSRALTDFTLELSARVKAIRGPQVKTAR--NIFALP-----VIQPESEAWFAQNL 557 (671)
T ss_pred HcCCCcchhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccceeec--cccccc-----cCChhHHHHHHhHH
Confidence 22111110 0123445444 56788888998876666654 233321 12442 4643211
Q ss_pred cchhhccCCCCcceEEeeecCCCCCCCcchhhhHHHHHHHHHHHHHhhhhc-CCCcEEEEecCCCCCC
Q 014151 275 SDFIRNSNNDNIDFASVHIYPDHWFHDLEFEDDLKFVTKWMLSHIEDGDKE-LNKPVFFTEYGLSNLI 341 (430)
Q Consensus 275 ~df~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~a~~~-~gkPv~v~EfG~~~~~ 341 (430)
.+| ....|++.+-..|. ......+.. .+|+.+.++..++. .++-=.|-|..+.+..
T Consensus 558 ~~~-----~~~yD~~a~mampy--me~~~~~~~----~~wl~~l~~~v~~~~~~~~k~vfelq~~dw~ 614 (671)
T PRK14582 558 DDF-----LKSYDWTAPMAMPL--MEGVAEKSS----DAWLIQLVNQVKNIPGALDKTIFELQARDWQ 614 (671)
T ss_pred HHH-----Hhhcchhhhhcchh--hhccCcccH----HHHHHHHHHHHHhcCCcccceEEEeeccccc
Confidence 122 23566666655442 111111112 34555544433321 2333467788886643
No 104
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=83.90 E-value=3.6 Score=45.82 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccC---CCCCcccc-CCCCCCh--HHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFND---GGYNSLQI-SPGQFDE--RVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~---g~~~~~~~-~pg~~de--~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
+-..+.+.+..++++|+++|=+-.+.. ++...+.+ .....|+ -..+.|..++++|+++||+||+++.-
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 567899999999999999998733211 11000000 0011111 13677899999999999999999754
No 105
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=83.74 E-value=8.8 Score=38.68 Aligned_cols=90 Identities=14% Similarity=0.094 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCC
Q 014151 124 HVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRND 203 (430)
Q Consensus 124 ~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~ 203 (430)
+++..|+++|++|++.-. .+ .....|++.|+.|.+-+-.++++ |.=+
T Consensus 68 ~~~~~A~~~~v~v~~~~~--------~~-----------------~~~l~~~~~R~~fi~siv~~~~~--------~gfD 114 (358)
T cd02875 68 ELLCYAHSKGVRLVLKGD--------VP-----------------LEQISNPTYRTQWIQQKVELAKS--------QFMD 114 (358)
T ss_pred HHHHHHHHcCCEEEEECc--------cC-----------------HHHcCCHHHHHHHHHHHHHHHHH--------hCCC
Confidence 678999999999987521 10 01245888999998888888887 6555
Q ss_pred CceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEc
Q 014151 204 PTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVG 249 (430)
Q Consensus 204 p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G 249 (430)
---+-||--+.. ...+.+.+..+++++.+.+++..+.-.|++.
T Consensus 115 GIdIDwE~p~~~---~~~d~~~~t~llkelr~~l~~~~~~~~Lsva 157 (358)
T cd02875 115 GINIDIEQPITK---GSPEYYALTELVKETTKAFKKENPGYQISFD 157 (358)
T ss_pred eEEEcccCCCCC---CcchHHHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 445556643321 1123577889999999999988777777764
No 106
>PRK09505 malS alpha-amylase; Reviewed
Probab=83.63 E-value=4 Score=44.71 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccC---C-------------CCCcccc-CCCCCCh--HHHHHHHHHHHHHHHcCCE
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFND---G-------------GYNSLQI-SPGQFDE--RVFKALDHVIVEARKNGVR 135 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~---g-------------~~~~~~~-~pg~~de--~~l~~lD~~l~~A~~~Gi~ 135 (430)
+-.-+.+-|+.++++|+|+|=+-...+ + .+....+ ..-..|+ -..+.|+.+|++|+++||+
T Consensus 228 dl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~ 307 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR 307 (683)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 345577889999999999988632211 0 0000000 0001122 1367899999999999999
Q ss_pred EEEecc
Q 014151 136 LLLSLV 141 (430)
Q Consensus 136 vil~l~ 141 (430)
||+++.
T Consensus 308 VilD~V 313 (683)
T PRK09505 308 ILFDVV 313 (683)
T ss_pred EEEEEC
Confidence 999864
No 107
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=83.20 E-value=3.9 Score=45.78 Aligned_cols=69 Identities=13% Similarity=0.216 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccC---CCCCcccc-CCCCCCh--HHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRTWAFND---GGYNSLQI-SPGQFDE--RVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~~~~~~---g~~~~~~~-~pg~~de--~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
++-..+.+.+..++++|+|+|=+-.+.. ++...+.+ .....|+ -..+.|..++++|+++||+||+++.-
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3577899999999999999998743311 11000000 0011111 13477999999999999999998753
No 108
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=83.01 E-value=6.8 Score=39.94 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
++.+.++++|+.+++.|++..=+-+.. -|+-..+.|..++++|++.|.||.+++.
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaLNig~-------------~d~~~~~~l~~a~~AA~~~gFKlf~SfD 68 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFALNIGS-------------SDSWQPDQLADAYQAAEAVGFKLFFSFD 68 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccc-------------CCcccHHHHHHHHHHHHhcCCEEEEEec
Confidence 468999999999999999987762210 1122357889999999999999999873
No 109
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=83.00 E-value=30 Score=34.57 Aligned_cols=158 Identities=17% Similarity=0.177 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHH--HHHHHHHHHcCCEEEEeccCCcccCCCcch
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKAL--DHVIVEARKNGVRLLLSLVNNLQAYGGKTQ 152 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~l--D~~l~~A~~~Gi~vil~l~~~w~~~gg~~~ 152 (430)
+.+.+++.++.+++.|+.+==+|. |..|..- ...-.+|++.|... .++++..++.|++|++-++..-....-...
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~l--D~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~ 98 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWN--DIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGS 98 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEE--CcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCC
Confidence 678899999999999987555543 2123110 01124556666666 899999999999999976442110000001
Q ss_pred hhhhhhh----------hCCC------CCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCC
Q 014151 153 YVNWAWE----------EGIG------ISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPR 216 (430)
Q Consensus 153 y~~W~~~----------~G~~------~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~ 216 (430)
|..+... .|.+ .+...---|+||++++.+.+.++.++.. ++- -.-|.=+|||.
T Consensus 99 ~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~--------~Gv---dg~w~D~~Ep~ 167 (339)
T cd06602 99 YPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQ--------VPF---DGLWIDMNEPS 167 (339)
T ss_pred CHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhc--------CCC---cEEEecCCCCc
Confidence 2222111 0110 0001112278999999999999887665 322 22367789996
Q ss_pred CCCCCChHHH--HHHHHHHHHHHHhcCCCCEEEE
Q 014151 217 CMSDPSGDTL--QDWIDEMSAFVKSIDKKHLVTV 248 (430)
Q Consensus 217 ~~~~~~~~~~--~~w~~~~~~~Ir~~dp~~lV~~ 248 (430)
.... -.++ ..+.+.....+++...+++++.
T Consensus 168 ~~~~--~hN~y~~~~~~~~~~~~~~~~~~r~~~~ 199 (339)
T cd06602 168 NFYD--VHNLYGLSEAIATYKALQSIPGKRPFVI 199 (339)
T ss_pred hHhh--hcchhhHHHHHHHHHHHHhcCCCCCEEE
Confidence 4210 0111 1244555666777633445444
No 110
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=82.78 E-value=44 Score=32.53 Aligned_cols=240 Identities=15% Similarity=0.206 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCcccc---CCCCCChHHHHHHHHHH-HHHHHcCCEEEE--eccCCcccCCC
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQI---SPGQFDERVFKALDHVI-VEARKNGVRLLL--SLVNNLQAYGG 149 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~---~pg~~de~~l~~lD~~l-~~A~~~Gi~vil--~l~~~w~~~gg 149 (430)
...+...|++++++|+|+|=+=+|+|..-..... -|.+.-+-.-+-+.++. ++.-+.|++|.- ++.. |+- ++
T Consensus 16 ~~nl~~l~~ri~~~~~~tV~Lqaf~d~~gdg~~~~~YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPvla-f~l-p~ 93 (294)
T PF14883_consen 16 ERNLDKLIQRIKDMGINTVYLQAFADPDGDGNADAVYFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPVLA-FDL-PK 93 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeCCCCCCceeeEEcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeehhh-ccC-CC
Confidence 3567888999999999999887776521100000 01122223334555666 555588998854 2211 221 11
Q ss_pred cchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEee---cCCCCCCCCCChHHH
Q 014151 150 KTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWEL---INEPRCMSDPSGDTL 226 (430)
Q Consensus 150 ~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel---~NEp~~~~~~~~~~~ 226 (430)
.+....+......+. ....-=..+|++++..++.-+-++.. ..+.|+.|.|+..+--+|+ .++|.. ......+
T Consensus 94 ~~~~~~~~~~~~~~~-~y~RLSPf~p~~r~~I~~IYeDLA~y-~~fdGILFhDDa~L~D~E~~~~~~~~~~--~~Kt~~L 169 (294)
T PF14883_consen 94 VKRADEVRTDRPDPD-GYRRLSPFDPEARQIIKEIYEDLARY-SKFDGILFHDDAVLSDFEIAAIRQNPAD--RQKTRAL 169 (294)
T ss_pred cchhhhccccCCCCC-CceecCCCCHHHHHHHHHHHHHHHhh-CCCCeEEEcCCccccchhhhhhccChhh--HHHHHHH
Confidence 111111110000000 00111124688988888888888765 7899999988866655551 111110 0013567
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCcc--chhhccCcchhhccCCCCcceEEeeecCCCCCCCcch
Q 014151 227 QDWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPE--MWASALGSDFIRNSNNDNIDFASVHIYPDHWFHDLEF 304 (430)
Q Consensus 227 ~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~--~w~~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~~~ 304 (430)
..+..++++.+|...|.....- .+|... -.+|. .|....=.+|. ...|++.+-..|.. ....
T Consensus 170 i~ft~eL~~~v~~~rp~lkTAR---Niya~p-----vl~P~se~WfAQnl~~fl-----~~YD~taimAMPym--E~~~- 233 (294)
T PF14883_consen 170 IDFTMELAAAVRRYRPDLKTAR---NIYAEP-----VLNPESEAWFAQNLDDFL-----KAYDYTAIMAMPYM--EQAE- 233 (294)
T ss_pred HHHHHHHHHHHHHhCccchhhh---cccccc-----cCCcchhhHHHHhHHHHH-----HhCCeeheeccchh--cccc-
Confidence 8889999999999987654332 222211 12442 45432111222 35677766555532 2111
Q ss_pred hhhHHHHHHHHHHHHHhhhhcC-CCcEEEEecCCCCCCC
Q 014151 305 EDDLKFVTKWMLSHIEDGDKEL-NKPVFFTEYGLSNLIK 342 (430)
Q Consensus 305 ~~~~~~~~~~l~~~~~~a~~~~-gkPv~v~EfG~~~~~~ 342 (430)
. -..|+.+.++..++.. ++-=.|-|.-+.....
T Consensus 234 -~----~~~WL~~Lv~~v~~~p~~l~KtvFELQa~dwr~ 267 (294)
T PF14883_consen 234 -D----PEQWLAQLVDAVAARPGGLDKTVFELQAVDWRT 267 (294)
T ss_pred -C----HHHHHHHHHHHHHhcCCcccceEEEEeccCCcc
Confidence 1 2355655555444322 2445777888877653
No 111
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=82.31 E-value=37 Score=38.54 Aligned_cols=114 Identities=13% Similarity=0.201 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHcCCEEEEeccCCcccCCCc------chh-hhhhhh---hCCCCC-CCCCCC-CCCHHHHHHHHHHH
Q 014151 118 VFKALDHVIVEARKNGVRLLLSLVNNLQAYGGK------TQY-VNWAWE---EGIGIS-SSNDSF-FFDPSIHKYFKHYV 185 (430)
Q Consensus 118 ~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~------~~y-~~W~~~---~G~~~~-~~~~~f-~~d~~~~~~~~~~~ 185 (430)
....|.++|+.|+++||+||+++.-+-...+|. +.+ +.|... .|.... ....++ ..++.+++.+.+.+
T Consensus 402 Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl 481 (898)
T TIGR02103 402 RIKEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSL 481 (898)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHH
Confidence 356889999999999999999864221111111 111 112111 110000 000111 23577888888888
Q ss_pred HHHHhccCCcccccccCCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEccCCc
Q 014151 186 KTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGLEGF 253 (430)
Q Consensus 186 ~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~ 253 (430)
+..++. |+=| .+ =++++..-. ..+++++.+.+|+++|+. +.+| |+|
T Consensus 482 ~~W~~e--------y~VD-GF-RfDlm~~~~----------~~f~~~~~~~l~~i~pdi-~l~G-EgW 527 (898)
T TIGR02103 482 VVWAKD--------YKVD-GF-RFDLMGHHP----------KAQMLAAREAIKALTPEI-YFYG-EGW 527 (898)
T ss_pred HHHHHH--------cCCC-EE-EEechhhCC----------HHHHHHHHHHHHHhCCCE-EEEe-cCC
Confidence 888876 6433 11 256664322 356677788899999984 4556 455
No 112
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=82.24 E-value=12 Score=36.13 Aligned_cols=80 Identities=14% Similarity=0.182 Sum_probs=56.6
Q ss_pred EEE-CCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHH
Q 014151 49 FML-DGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIV 127 (430)
Q Consensus 49 f~~-~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~ 127 (430)
+.+ +|+.+.++|-+.- .+.+...+.-+.+|++|+.++|...|-. ..+|..|..-.-+.+..+-+
T Consensus 21 ~~~g~~~~~~iaGPCsi---------e~~~~~~~~A~~lk~~g~~~~r~~~~kp------RTs~~s~~G~g~~gl~~l~~ 85 (266)
T PRK13398 21 VVIGGEEKIIIAGPCAV---------ESEEQMVKVAEKLKELGVHMLRGGAFKP------RTSPYSFQGLGEEGLKILKE 85 (266)
T ss_pred EEEcCCCEEEEEeCCcC---------CCHHHHHHHHHHHHHcCCCEEEEeeecC------CCCCCccCCcHHHHHHHHHH
Confidence 444 4555677787642 2578888999999999999999966531 12344454434666777778
Q ss_pred HHHHcCCEEEEeccCC
Q 014151 128 EARKNGVRLLLSLVNN 143 (430)
Q Consensus 128 ~A~~~Gi~vil~l~~~ 143 (430)
.|++.||.++-+.++.
T Consensus 86 ~~~~~Gl~~~te~~d~ 101 (266)
T PRK13398 86 VGDKYNLPVVTEVMDT 101 (266)
T ss_pred HHHHcCCCEEEeeCCh
Confidence 8899999999888763
No 113
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=81.63 E-value=3.1 Score=39.89 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014151 77 ARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSL 140 (430)
Q Consensus 77 ~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l 140 (430)
+.+++.++.++.+|.++|+++....+ + ...+...-+...+.|.++.+.|+++||++.+-.
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~~~~~~~-~---~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLISAAHAG-Y---LTPPNVIWGRLAENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCC-C---CCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 46778889999999999999653221 1 111111124667889999999999999987753
No 114
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=81.54 E-value=38 Score=33.78 Aligned_cols=132 Identities=14% Similarity=0.189 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchh
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQY 153 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y 153 (430)
.+.+++.+.++.+++.|+.+==+|+ |..|.. ....-.+|++.|.....+++..++.|++|++.++..-..-.+.+.|
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~l--D~~~~~-~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y 97 (339)
T cd06603 21 KDQEDVKEVDAGFDEHDIPYDVIWL--DIEHTD-GKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVY 97 (339)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEE--ChHHhC-CCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHH
Confidence 3688999999999999988655543 111210 0011245677777778899999999999999765421100011122
Q ss_pred hhhhh-------hhCCCC------CCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCC
Q 014151 154 VNWAW-------EEGIGI------SSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRC 217 (430)
Q Consensus 154 ~~W~~-------~~G~~~------~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~ 217 (430)
..=.. ..|.+. +....--|++|++++.+.+.++.+... . ..+....|.=+|||..
T Consensus 98 ~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~--------~-~~g~~g~w~D~~Ep~~ 165 (339)
T cd06603 98 KEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYK--------G-STENLYIWNDMNEPSV 165 (339)
T ss_pred HHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhc--------c-cCCCceEEeccCCccc
Confidence 11000 001000 000111268899999999999887543 1 2233445666899863
No 115
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=80.63 E-value=18 Score=35.73 Aligned_cols=92 Identities=10% Similarity=0.123 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccC-CCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcc
Q 014151 73 DYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQIS-PGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKT 151 (430)
Q Consensus 73 ~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~-pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~ 151 (430)
||+.++-.+.|+.+++.|+|+.= +...+.+-+... ...|.++.++.|.++++.|+++|+..+..++....
T Consensus 11 PWs~e~R~~l~~f~~~~kmN~Yi---YAPKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~aisPg~~------ 81 (306)
T PF07555_consen 11 PWSHEDRLDLIRFLGRYKMNTYI---YAPKDDPYHRSKWREPYPEEELAELKELADAAKANGVDFVYAISPGLD------ 81 (306)
T ss_dssp ---HHHHHHHHHHHHHTT--EEE---E--TT-TTTTTTTTS---HHHHHHHHHHHHHHHHTT-EEEEEEBGTTT------
T ss_pred CCCHHHHHHHHHHHHHcCCceEE---ECCCCChHHHhhhcccCCHHHHHHHHHHHHHHHHcCCEEEEEECcccc------
Confidence 56788889999999999999543 332111111100 02367889999999999999999999999875210
Q ss_pred hhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhc
Q 014151 152 QYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTR 191 (430)
Q Consensus 152 ~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R 191 (430)
..|++++-.+..++-+++|.+-
T Consensus 82 ------------------~~~s~~~d~~~L~~K~~ql~~l 103 (306)
T PF07555_consen 82 ------------------ICYSSEEDFEALKAKFDQLYDL 103 (306)
T ss_dssp --------------------TSHHHHHHHHHHHHHHHHCT
T ss_pred ------------------cccCcHHHHHHHHHHHHHHHhc
Confidence 0144556666666666776554
No 116
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=80.10 E-value=24 Score=31.64 Aligned_cols=130 Identities=9% Similarity=0.043 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCcc--ccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhh
Q 014151 77 ARVGAMLQAGAKMGLTVCRTWAFNDGGYNSL--QISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYV 154 (430)
Q Consensus 77 ~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~--~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~ 154 (430)
...++..+.+++.|+.++-++.......... ...... -+..++.+.+.++.|++.|.+.+......+... .
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~------~ 99 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSG------P 99 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSS------T
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcccccc------c
Confidence 4677888889999999777654432111100 001112 467789999999999999999976532100000 0
Q ss_pred hhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCCCChHHHHHHHHHHH
Q 014151 155 NWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMS 234 (430)
Q Consensus 155 ~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~ 234 (430)
. ....+..+.+.+.++.+++. -+.+...++.|....+...... . ++++.
T Consensus 100 ------~----------~~~~~~~~~~~~~l~~l~~~--------a~~~gv~i~lE~~~~~~~~~~~---~----~~~~~ 148 (213)
T PF01261_consen 100 ------E----------DDTEENWERLAENLRELAEI--------AEEYGVRIALENHPGPFSETPF---S----VEEIY 148 (213)
T ss_dssp ------T----------SSHHHHHHHHHHHHHHHHHH--------HHHHTSEEEEE-SSSSSSSEES---S----HHHHH
T ss_pred ------C----------CCHHHHHHHHHHHHHHHHhh--------hhhhcceEEEecccCccccchh---h----HHHHH
Confidence 0 12345677777888888777 5544455555544433332110 1 46667
Q ss_pred HHHHhcCCCC
Q 014151 235 AFVKSIDKKH 244 (430)
Q Consensus 235 ~~Ir~~dp~~ 244 (430)
..++++++..
T Consensus 149 ~~l~~~~~~~ 158 (213)
T PF01261_consen 149 RLLEEVDSPN 158 (213)
T ss_dssp HHHHHHTTTT
T ss_pred HHHhhcCCCc
Confidence 7788888654
No 117
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=80.08 E-value=5.4 Score=39.40 Aligned_cols=57 Identities=21% Similarity=0.222 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
.+.....++.|++.|+.-|=+ +- +++ ...++..+..+++++..|.+.|++||++...
T Consensus 15 ~~~~~~Yi~~~~~~Gf~~IFt---sl-----~~~--~~~~~~~~~~~~ell~~Anklg~~vivDvnP 71 (360)
T COG3589 15 KEKDIAYIDRMHKYGFKRIFT---SL-----LIP--EEDAELYFHRFKELLKEANKLGLRVIVDVNP 71 (360)
T ss_pred chhHHHHHHHHHHcCccceee---ec-----ccC--CchHHHHHHHHHHHHHHHHhcCcEEEEEcCH
Confidence 456788999999999994433 21 112 2234678999999999999999999998753
No 118
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=80.02 E-value=28 Score=35.72 Aligned_cols=105 Identities=15% Similarity=0.189 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcc-cCCCcchh
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQ-AYGGKTQY 153 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~-~~gg~~~y 153 (430)
+.+++.+.-+.+++.|+|.+=+ ++. +.-+.+.-..+...+..+.++.+.-+++||++.|+..-.-. ..||.+
T Consensus 181 n~qR~kDYAR~laSiGINg~v~---NNV--Nvk~~e~~lit~~fl~k~aklAdiFR~YGIK~yLsinfaSP~~lGgL~-- 253 (684)
T COG3661 181 NDQRMKDYARALASIGINGTVL---NNV--NVKKAESYLITAPFLAKAAKLADIFRPYGIKVYLSINFASPMELGGLK-- 253 (684)
T ss_pred chHHHHHHHHHHhhcCcceEEe---ccc--ccchhhhheechHhHHHHHHHHHHhhhccceEEEEeccCCccccCCcC--
Confidence 3578889999999999998876 221 00001111235567888899999999999999998631100 012221
Q ss_pred hhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeec
Q 014151 154 VNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELI 212 (430)
Q Consensus 154 ~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~ 212 (430)
..---|+.+++.+++-.+.| |+.-|-.-++-+-
T Consensus 254 ---------------TADPLDe~VrawWkeka~~I-----------Y~yIPDFGGFLVK 286 (684)
T COG3661 254 ---------------TADPLDEAVRAWWKEKADEI-----------YKYIPDFGGFLVK 286 (684)
T ss_pred ---------------cCCcccHHHHHHHHHHHHHH-----------HHhcccccceEEe
Confidence 11123677777777666666 6667766666553
No 119
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=79.55 E-value=5.3 Score=47.91 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccC---CCCCccc-cCCCCCCh--HHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFND---GGYNSLQ-ISPGQFDE--RVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~---g~~~~~~-~~pg~~de--~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
+-..+.+.+..++++|+|+|=+-.+.. ++...+- ......|+ -..+.|++++++|+++||+||+++.-
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 567899999999999999987733211 1100000 00111122 13677899999999999999999864
No 120
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=79.37 E-value=5.8 Score=40.00 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
+.+...+.++.|++.|++.|=+-.+ .|+ .-.+..++.+.++++.|+++||+|++++..
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~--------ipe--~~~~~~~~~~~~l~~~a~~~~~~v~~Disp 69 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLH--------IPE--DDPEDYLERLKELLKLAKELGMEVIADISP 69 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE-------------------HHHHHHHHHHHHHHCT-EEEEEE-C
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCC--------cCC--CCHHHHHHHHHHHHHHHHHCCCEEEEECCH
Confidence 4688999999999999995544111 111 123577899999999999999999998754
No 121
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=79.26 E-value=4.2 Score=44.68 Aligned_cols=59 Identities=19% Similarity=0.344 Sum_probs=38.5
Q ss_pred HHHHHHHcCCCEEEEccccCC---------------CCCcc---ccCCCCCCh-HHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 82 MLQAGAKMGLTVCRTWAFNDG---------------GYNSL---QISPGQFDE-RVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 82 ~~~~~~~~G~n~vR~~~~~~g---------------~~~~~---~~~pg~~de-~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
.|+.++++|+|+|=+-...+. +|.+. .+. +.|.. ...+.|.++|++|+++||+||+++.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d-~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPE-PRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccC-hhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 489999999999998432110 01100 011 11211 1367899999999999999999865
No 122
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=78.27 E-value=38 Score=32.02 Aligned_cols=100 Identities=19% Similarity=0.289 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccc
Q 014151 119 FKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGV 198 (430)
Q Consensus 119 l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~ 198 (430)
.+.....+..++++|+||++++.. |.. + . + -....+++.++.|.+-+..++.+
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg-~~~-~-~----------~-------~~~~~~~~~~~~fa~~l~~~v~~------- 102 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILG-NHL-G-A----------G-------FANNLSDAAAKAYAKAIVDTVDK------- 102 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECC-CCC-C-C----------C-------ccccCCHHHHHHHHHHHHHHHHH-------
Confidence 455677888899999999998743 211 0 0 0 00124567788888888888887
Q ss_pred cccCCCceeEEeecCCCCCC-CCCChHHHHHHHHHHHHHHHhcCC-CCEEEEc
Q 014151 199 EYRNDPTIFAWELINEPRCM-SDPSGDTLQDWIDEMSAFVKSIDK-KHLVTVG 249 (430)
Q Consensus 199 ~yk~~p~I~~wel~NEp~~~-~~~~~~~~~~w~~~~~~~Ir~~dp-~~lV~~G 249 (430)
|+=|---+-||-.+..... ...+.+.+..+++++.+.+ +| +.++++.
T Consensus 103 -yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~---~~~~kllt~~ 151 (255)
T cd06542 103 -YGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYM---GPTDKLLTID 151 (255)
T ss_pred -hCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHh---CcCCcEEEEE
Confidence 7656555556655432111 0112355666666665554 44 6677664
No 123
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=77.79 E-value=44 Score=33.02 Aligned_cols=156 Identities=15% Similarity=0.153 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchh
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQY 153 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y 153 (430)
.+.+++++.++.+++.++.+==+|+ |..|..- ...-.+|++.|....++++..+++|++|++-++..-.. .+.+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~i~l--D~~~~~~-~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~---~~~~ 94 (317)
T cd06600 21 YPQDKVVEVVDIMQKEGFPYDVVFL--DIHYMDS-YRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRV---DQNY 94 (317)
T ss_pred CCHHHHHHHHHHHHHcCCCcceEEE--ChhhhCC-CCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccC---CCCC
Confidence 3678899999999999987665543 2123110 01125677777788899999999999999866542110 0001
Q ss_pred hhhhhh----------hCCCC------CCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCC
Q 014151 154 VNWAWE----------EGIGI------SSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRC 217 (430)
Q Consensus 154 ~~W~~~----------~G~~~------~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~ 217 (430)
..+... .|.+. +...---|++|++++.+.+.++.+... ++ .-.-|.=+|||..
T Consensus 95 ~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~--------~g---vdg~w~D~~Ep~~ 163 (317)
T cd06600 95 SPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNS--------QG---VDGIWLDMNEPSD 163 (317)
T ss_pred hHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhc--------CC---CceEEeeCCCCcc
Confidence 111100 11100 001112268899999999999887643 22 2223666899864
Q ss_pred CCCCChHHH--HHHHHHHHHHHHhcCC-CCEEEE
Q 014151 218 MSDPSGDTL--QDWIDEMSAFVKSIDK-KHLVTV 248 (430)
Q Consensus 218 ~~~~~~~~~--~~w~~~~~~~Ir~~dp-~~lV~~ 248 (430)
... -..+ ..+.+.....+++..| .++++.
T Consensus 164 ~~~--~hn~y~~~~~~a~~~~~~~~~~~~r~~~~ 195 (317)
T cd06600 164 FEK--VHNLYGLYEAMATAEGFRTSHPRNRIFIL 195 (317)
T ss_pred HHH--hcchhhHHHHHHHHHHHHHhcCCCCceEE
Confidence 311 0111 2345556667777665 355554
No 124
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=77.17 E-value=20 Score=30.65 Aligned_cols=86 Identities=14% Similarity=0.183 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCc
Q 014151 116 ERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTI 195 (430)
Q Consensus 116 e~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~ 195 (430)
..-++.|.-+|+.|++.|+.|++.+.. .-..|..-.|. +.+.++.+.+-++.++.+
T Consensus 32 SpEy~Dl~l~L~~~k~~g~~~lfVi~P---------vNg~wydytG~-----------~~~~r~~~y~kI~~~~~~---- 87 (130)
T PF04914_consen 32 SPEYDDLQLLLDVCKELGIDVLFVIQP---------VNGKWYDYTGL-----------SKEMRQEYYKKIKYQLKS---- 87 (130)
T ss_dssp -THHHHHHHHHHHHHHTT-EEEEEE-------------HHHHHHTT-------------HHHHHHHHHHHHHHHHT----
T ss_pred CccHHHHHHHHHHHHHcCCceEEEecC---------CcHHHHHHhCC-----------CHHHHHHHHHHHHHHHHH----
Confidence 344788999999999999999876532 11235433332 578899999999999998
Q ss_pred ccccccCCCceeEEeecCCCCCCCCCChHHHHHHH
Q 014151 196 TGVEYRNDPTIFAWELINEPRCMSDPSGDTLQDWI 230 (430)
Q Consensus 196 tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~ 230 (430)
++= .-+-..+=.+||....+.-.-.++-|+
T Consensus 88 ----~gf-~v~D~s~~~y~~yfm~D~iHlgw~GWv 117 (130)
T PF04914_consen 88 ----QGF-NVADFSDDEYEPYFMQDTIHLGWKGWV 117 (130)
T ss_dssp ----TT---EEE-TTGTTSTTSBSSSSSB-THHHH
T ss_pred ----CCC-EEEecccCCCCCceeeecccCchhhHH
Confidence 544 222223345667655443233445554
No 125
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=76.43 E-value=6.9 Score=37.57 Aligned_cols=61 Identities=11% Similarity=0.248 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 77 ARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 77 ~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
+.+++.++.++.+|++.||++.+.. + ..+.+...-+...+.|+++.+.|+++||++.+-.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~--~--~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDV--Y--YEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCccc--c--cccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 5678899999999999999853211 1 01111111245567899999999999999977543
No 126
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=76.16 E-value=24 Score=37.40 Aligned_cols=81 Identities=15% Similarity=0.259 Sum_probs=54.1
Q ss_pred CCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCC-CCC--ccccCCCCCChHHHHHHHHHHHH
Q 014151 52 DGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDG-GYN--SLQISPGQFDERVFKALDHVIVE 128 (430)
Q Consensus 52 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g-~~~--~~~~~pg~~de~~l~~lD~~l~~ 128 (430)
.|+.-++.|+--.+ . ..||..++-++.|++++++|+++. .+... ++. .+.. ..|+-+-.+.|..+|++
T Consensus 12 ~g~r~fiCGVvEGF---Y-GRPWt~EQRK~LFrrl~~~gl~tY---lYAPKDDyKHR~~WR--ElY~vEEa~~L~~Li~a 82 (891)
T KOG3698|consen 12 VGNRKFICGVVEGF---Y-GRPWTPEQRKHLFRRLNQLGLTTY---LYAPKDDYKHRSLWR--ELYNVEEATYLRNLIEA 82 (891)
T ss_pred cccceeEEEeeccc---c-CCCCCHHHHHHHHHHHHhccccee---eecccchhHHHHHHH--HHhhhHHHHHHHHHHHH
Confidence 56666777875221 1 146788999999999999999944 33221 110 0000 13555667889999999
Q ss_pred HHHcCCEEEEecc
Q 014151 129 ARKNGVRLLLSLV 141 (430)
Q Consensus 129 A~~~Gi~vil~l~ 141 (430)
|++++|..+-.+.
T Consensus 83 Ake~~i~F~YAiS 95 (891)
T KOG3698|consen 83 AKENNINFVYAIS 95 (891)
T ss_pred HHhcCceEEEEcC
Confidence 9999999887654
No 127
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=75.53 E-value=7.6 Score=45.56 Aligned_cols=60 Identities=18% Similarity=0.315 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCEEEEccccC-CC--------------CCcc---ccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 81 AMLQAGAKMGLTVCRTWAFND-GG--------------YNSL---QISPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 81 ~~~~~~~~~G~n~vR~~~~~~-g~--------------~~~~---~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
+.++.++++|+|+|=+-...+ .. |.+. .+.| .|.....+.|.++|++|+++||+||+++.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp-~yg~~~~~efk~lV~~~H~~GI~VILDvV 268 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDP-RLAPGGEEEFAQAIKEAQSAGIAVILDVV 268 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcCh-hhccCcHHHHHHHHHHHHHCCCEEEEEEc
Confidence 568899999999998733211 00 1110 1111 22212567899999999999999999864
No 128
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=74.86 E-value=8.1 Score=36.55 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 77 ARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 77 ~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
+.+++.++.++++|...||++.... + -.+......+...+.|.++.+.|+++||++.+-.++
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~---~-~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~ 145 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKR---P-AGVSPEEARATLVENLRYAADALDRIGLTLLIEPIN 145 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCC---C-CCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 5677888999999999999854211 0 000001112344577899999999999999887554
No 129
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=73.38 E-value=9.9 Score=39.59 Aligned_cols=67 Identities=16% Similarity=0.233 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCC--CCCccccC-CCCCC--hHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDG--GYNSLQIS-PGQFD--ERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g--~~~~~~~~-pg~~d--e~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
+-.=+.+-++.++++|+++|=+-.+-.. .+...... .-..+ .-..+.+++++++|+++||+||+++.
T Consensus 27 dl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V 98 (505)
T COG0366 27 DLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLV 98 (505)
T ss_pred cHHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 4455678999999999999977332211 01000000 00011 13467889999999999999999874
No 130
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=73.18 E-value=8.7 Score=41.49 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCEEEEccccC-CC-CC-ccccC-CCCCC-------h--HHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 80 GAMLQAGAKMGLTVCRTWAFND-GG-YN-SLQIS-PGQFD-------E--RVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 80 ~~~~~~~~~~G~n~vR~~~~~~-g~-~~-~~~~~-pg~~d-------e--~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
+...+.++++|++.|=+-.+-. |+ |- ..-|. .+.|| + -.++.++++++.|+++||+||++|.-
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVp 152 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDIIP 152 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3566778999999988743321 11 10 00011 13333 1 24678999999999999999999864
No 131
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=73.16 E-value=76 Score=31.03 Aligned_cols=159 Identities=14% Similarity=0.138 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCCCCcc-ccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcch
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSL-QISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQ 152 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~-~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~ 152 (430)
.+.+.+++.++.+++.|+.+==++. .+ .|..- ....-.+|++.|....++++..+++|+++++-++..-. ...+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~l-D~-~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~--~~~~~ 96 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHL-DC-FWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIA--QKSPL 96 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEE-ec-ccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCC--CCchh
Confidence 3688899999999999977643322 22 23211 00122456677777889999999999999986653210 00111
Q ss_pred hhh-----hhh-h-hCCCCC------CCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCC
Q 014151 153 YVN-----WAW-E-EGIGIS------SSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMS 219 (430)
Q Consensus 153 y~~-----W~~-~-~G~~~~------~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~ 219 (430)
|.. +.. . .|.+.. ....--+++|++++.+.+.++.+..- |+.+ -|.=+||+-...
T Consensus 97 ~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~-----Gid~-------~~~D~~e~~p~~ 164 (308)
T cd06593 97 FKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLDM-----GVDC-------FKTDFGERIPTD 164 (308)
T ss_pred HHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHHh-----CCcE-------EecCCCCCCCcc
Confidence 111 000 0 011000 00111268899999999988876542 1111 133367753221
Q ss_pred CC-----ChHH-----HHHHHHHHHHHHHhcCCC-CEEEE
Q 014151 220 DP-----SGDT-----LQDWIDEMSAFVKSIDKK-HLVTV 248 (430)
Q Consensus 220 ~~-----~~~~-----~~~w~~~~~~~Ir~~dp~-~lV~~ 248 (430)
.. .... -..+.+.+.+++++..++ ++++.
T Consensus 165 ~~~~~g~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~ 204 (308)
T cd06593 165 VVYYDGSDGEKMHNYYALLYNKAVYEATKEVKGEGEAVVW 204 (308)
T ss_pred ccccCCCCcceeeeHHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 10 0111 134566777788888776 46554
No 132
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=73.04 E-value=14 Score=38.36 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCCCC-------ccc----------------------------cCCCCCChHH
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRTWAFNDGGYN-------SLQ----------------------------ISPGQFDERV 118 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~-------~~~----------------------------~~pg~~de~~ 118 (430)
.+.+.+.+.++.|+...+|++-+++-.+-+|+ .+. ...|.|.
T Consensus 19 ~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT--- 95 (445)
T cd06569 19 HSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYS--- 95 (445)
T ss_pred CCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccC---
Confidence 46889999999999999999998764332342 110 0012344
Q ss_pred HHHHHHHHHHHHHcCCEEEEec
Q 014151 119 FKALDHVIVEARKNGVRLLLSL 140 (430)
Q Consensus 119 l~~lD~~l~~A~~~Gi~vil~l 140 (430)
-+.+.++++.|+++||.||+.+
T Consensus 96 ~~di~eiv~yA~~rgI~VIPEI 117 (445)
T cd06569 96 RADYIEILKYAKARHIEVIPEI 117 (445)
T ss_pred HHHHHHHHHHHHHcCCEEEEcc
Confidence 4567899999999999999966
No 133
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=72.78 E-value=9.5 Score=36.68 Aligned_cols=61 Identities=11% Similarity=0.188 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 77 ARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 77 ~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
+.+++.++.++++|.++|+++... .. ........-+...+.+.++.+.|+++||++.+-.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~---~~-~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~ 154 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLAGYD---VY-YEEHDEETRRRFREGLKEAVELAARAQVTLAVEIM 154 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcc---cc-cCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeC
Confidence 457889999999999999984321 10 00000011235667889999999999999987643
No 134
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=72.66 E-value=15 Score=35.11 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
+++++.+.-+.++++|++.+|--.| . -..+|..|..-..+.|..+.+.|++.||.++-+.++
T Consensus 27 s~e~~~~~a~~~~~~g~~~~r~g~~-----k-pRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d 88 (250)
T PRK13397 27 SYDHIRLAASSAKKLGYNYFRGGAY-----K-PRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMS 88 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccc-----C-CCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCC
Confidence 5788888888899999999997333 2 134666676666788999999999999999988876
No 135
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=72.29 E-value=74 Score=30.42 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhh
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYV 154 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~ 154 (430)
+.....+.-+.+++.|+.+.-+........+...+.+. --+..++.+.+.++.|++.|..+|. ++. +.
T Consensus 50 ~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~-~r~~~~~~~~~~i~~a~~lG~~~v~-~~~------~~---- 117 (279)
T TIGR00542 50 SREQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKA-VRQQGLEIMEKAIQLARDLGIRTIQ-LAG------YD---- 117 (279)
T ss_pred CHHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHH-HHHHHHHHHHHHHHHHHHhCCCEEE-ecC------cc----
Confidence 35666667777888888876653211100000001111 1135678899999999999999875 321 00
Q ss_pred hhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCC
Q 014151 155 NWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEP 215 (430)
Q Consensus 155 ~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp 215 (430)
.. .+ -.+++..+.+.+.++.+++. -+..-..++.|..+.+
T Consensus 118 ~~---~~----------~~~~~~~~~~~~~l~~l~~~--------A~~~Gv~l~lE~~~~~ 157 (279)
T TIGR00542 118 VY---YE----------EHDEETRRRFREGLKEAVEL--------AARAQVTLAVEIMDTP 157 (279)
T ss_pred cc---cC----------cCCHHHHHHHHHHHHHHHHH--------HHHcCCEEEEeeCCCc
Confidence 00 00 01356677788888888887 6666677888866543
No 136
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=71.78 E-value=1.1e+02 Score=31.05 Aligned_cols=257 Identities=13% Similarity=0.105 Sum_probs=122.7
Q ss_pred CCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHH
Q 014151 52 DGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARK 131 (430)
Q Consensus 52 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~ 131 (430)
+|-...+.|+..--++.......+.+.+.+.++.+=+.|+|.|=+ + |+-.. .=.|..+. + ++++.
T Consensus 9 ~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidT-A-----~~Yh~----g~sE~~lg---k--aL~~~ 73 (391)
T COG1453 9 TGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDT-A-----WPYHG----GESEEFLG---K--ALKDG 73 (391)
T ss_pred CCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEee-c-----ccccC----CCchHHHH---H--Hhhhc
Confidence 444455555553333332212236788888999999999998887 1 21111 01122221 1 22344
Q ss_pred cCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCC-CceeEEe
Q 014151 132 NGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRND-PTIFAWE 210 (430)
Q Consensus 132 ~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~-p~I~~we 210 (430)
+.-+|.|..- +|.|. . +..+.+++++.+=++| ++-| =-+...-
T Consensus 74 ~Rekv~LaTK-----------lp~~~--------------~---~~~edm~r~fneqLek--------l~~Dy~D~yliH 117 (391)
T COG1453 74 YREKVKLATK-----------LPSWP--------------V---KDREDMERIFNEQLEK--------LGTDYIDYYLIH 117 (391)
T ss_pred ccceEEEEee-----------cCCcc--------------c---cCHHHHHHHHHHHHHH--------hCCchhhhhhhc
Confidence 4555655321 12221 1 2245566666666666 4432 1111111
Q ss_pred ecCCCCCCCCCChHHHHHHHHHH--HHHHHhcCC-CCEEEEccCCccCCCCCCCcccCccchhhccCcchhhccCCCCcc
Q 014151 211 LINEPRCMSDPSGDTLQDWIDEM--SAFVKSIDK-KHLVTVGLEGFYGPKSPKRLTVNPEMWASALGSDFIRNSNNDNID 287 (430)
Q Consensus 211 l~NEp~~~~~~~~~~~~~w~~~~--~~~Ir~~dp-~~lV~~G~~g~~~~~~~~~~~~np~~w~~~~g~df~~~~~~~~iD 287 (430)
-.|+ ....|+.+. ..++++... .+...+|. ++.+. . ..|......-..|
T Consensus 118 ~l~~----------e~~~k~~~~g~~df~~kak~eGkIr~~GF-SfHgs-~----------------e~~~~iv~a~~~d 169 (391)
T COG1453 118 GLNT----------ETWEKIERLGVFDFLEKAKAEGKIRNAGF-SFHGS-T----------------EVFKEIVDAYPWD 169 (391)
T ss_pred cccH----------HHHHHHHccChHHHHHHHHhcCcEEEeee-cCCCC-H----------------HHHHHHHhcCCcc
Confidence 1222 233444443 566665443 56667764 33221 0 1344444445599
Q ss_pred eEEeeecCCCCCCCcchhhhHHHHHHHHHHHHHhhhhcCCCcEEEEecCCCCCCCCCChhHHHHHHHHHHHHHHHHHh-c
Q 014151 288 FASVHIYPDHWFHDLEFEDDLKFVTKWMLSHIEDGDKELNKPVFFTEYGLSNLIKGFEPSLRDKLYKTILDIVYKSAK-R 366 (430)
Q Consensus 288 ~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~a~~~~gkPv~v~EfG~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~ 366 (430)
|+.+|+|--+|.... ..+.++.|.+ .|++|+|.|==-...--.-.++. ...+.+.+. .
T Consensus 170 fvqlq~ny~d~~n~~------------~~~~l~~A~~-~~~gI~IMeP~~gG~l~~~vP~~--------~~~l~~~~~~~ 228 (391)
T COG1453 170 FVQLQYNYIDQKNQA------------GTEGLKYAAS-KGLGIFIMEPLDGGGLLYNVPEK--------LEELCRPASPK 228 (391)
T ss_pred eEEeeeeeeccchhc------------ccHHHHHHHh-CCCcEEEEeeCCCCCcccCCCHH--------HHHHHHhcCCC
Confidence 999998864432210 1234456665 89999999853222110001111 112222211 0
Q ss_pred CCCcccceeeeeccCCCccCCCCceEEcCCCccHHHHHHHHHHHHhhccc
Q 014151 367 KRSGAGALIWQLFVEGMEEYNDDFGIVPWERTSTYKLLTEQSCGLGRISR 416 (430)
Q Consensus 367 ~~~~~G~~~W~~~~~~~~~~~dg~~i~~~~~~~~~~~~~~~~~~~~~~~~ 416 (430)
..+..=++-|.|.. ..=++... +.++..-+.++.+-+..++-
T Consensus 229 ~sP~~wa~R~~~sh-------p~V~~vls-Gm~~~~~l~enLk~~~~~~p 270 (391)
T COG1453 229 RSPAEWALRYLLSH-------PEVTTVLS-GMNTPEQLEENLKIASELEP 270 (391)
T ss_pred CCcHHHHHHHHhcC-------CCeEEEec-CCCCHHHHHHHHHHHhhcCC
Confidence 11111122233322 23345544 47777888899988888874
No 137
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=71.40 E-value=14 Score=42.75 Aligned_cols=156 Identities=15% Similarity=0.284 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccC-C---------------------CC--Cc---cccCCCCCCh------HHHHH
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFND-G---------------------GY--NS---LQISPGQFDE------RVFKA 121 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~-g---------------------~~--~~---~~~~pg~~de------~~l~~ 121 (430)
+..-+.+.|+.++++|+|+|-+-...+ . .| .+ +.++ +.|.. ...+.
T Consensus 478 tf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape-~~Ygtdp~dp~~ri~E 556 (1111)
T TIGR02102 478 TFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALS-GMYSEDPKDPELRIAE 556 (1111)
T ss_pred CHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccc-cccccCCcCccccHHH
Confidence 345566679999999999999844211 0 01 00 0011 22211 12578
Q ss_pred HHHHHHHHHHcCCEEEEeccC-Ccc---cCCC-cchhhhhhhhhCCCCC-CCCCCC-CCCHHHHHHHHHHHHHHHhccCC
Q 014151 122 LDHVIVEARKNGVRLLLSLVN-NLQ---AYGG-KTQYVNWAWEEGIGIS-SSNDSF-FFDPSIHKYFKHYVKTVLTRKNT 194 (430)
Q Consensus 122 lD~~l~~A~~~Gi~vil~l~~-~w~---~~gg-~~~y~~W~~~~G~~~~-~~~~~f-~~d~~~~~~~~~~~~~lv~R~n~ 194 (430)
|.++|++|+++||+||+++.- |-. .+-+ .+.|-.+....|.... ....++ ..++.+++.+.+-++..++.
T Consensus 557 fK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~e--- 633 (1111)
T TIGR02102 557 FKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDE--- 633 (1111)
T ss_pred HHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHh---
Confidence 999999999999999998642 210 0101 0111111111111000 000111 24577888888888888876
Q ss_pred cccccccCCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEccCCc
Q 014151 195 ITGVEYRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGLEGF 253 (430)
Q Consensus 195 ~tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~ 253 (430)
|+=|- +=++++... . ..++.++...+++++|+.. ++| |+|
T Consensus 634 -----y~VDG--FRfDl~g~~------d----~~~~~~~~~~l~~~dP~~~-liG-E~W 673 (1111)
T TIGR02102 634 -----FKVDG--FRFDMMGDH------D----AASIEIAYKEAKAINPNII-MIG-EGW 673 (1111)
T ss_pred -----cCCcE--EEEeccccC------C----HHHHHHHHHHHHHhCcCEE-EEE-ecc
Confidence 64321 124555321 1 1234555566778888643 444 344
No 138
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=71.21 E-value=43 Score=33.51 Aligned_cols=103 Identities=14% Similarity=0.189 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHH-cCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccc
Q 014151 120 KALDHVIVEARK-NGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGV 198 (430)
Q Consensus 120 ~~lD~~l~~A~~-~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~ 198 (430)
..+.++..+.++ .+++|++.+-. |..... .+ .....+++.++.|.+-+-.++++
T Consensus 56 ~~~~~~~~lk~~~p~lkvlisiGG-~~~~~~-----~f------------~~~~~~~~~r~~fi~~iv~~l~~------- 110 (362)
T cd02872 56 GLYERFNALKEKNPNLKTLLAIGG-WNFGSA-----KF------------SAMAASPENRKTFIKSAIAFLRK------- 110 (362)
T ss_pred hHHHHHHHHHhhCCCceEEEEEcC-CCCCcc-----hh------------HHHhCCHHHHHHHHHHHHHHHHH-------
Confidence 445555554444 48999998732 321000 01 12245788888888888888888
Q ss_pred cccCCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEc
Q 014151 199 EYRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVG 249 (430)
Q Consensus 199 ~yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G 249 (430)
|+=+--.+-||--+-... ...+.+.+..+++++.+.+++..++.++++.
T Consensus 111 -~~~DGidiDwE~p~~~~~-~~~d~~~~~~ll~~lr~~l~~~~~~~~ls~a 159 (362)
T cd02872 111 -YGFDGLDLDWEYPGQRGG-PPEDKENFVTLLKELREAFEPEAPRLLLTAA 159 (362)
T ss_pred -cCCCCeeeeeeccccCCC-CHHHHHHHHHHHHHHHHHHHhhCcCeEEEEE
Confidence 766666666775432211 1113467888999999999887666677664
No 139
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=71.20 E-value=10 Score=36.38 Aligned_cols=61 Identities=15% Similarity=0.288 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 77 ARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 77 ~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
+.+++.++.++++|...|++..+.. + ........-+...+.|..+.+.|+++||++.+-.+
T Consensus 99 ~~~~~~i~~a~~lG~~~i~~~~~~~--~--~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~ 159 (283)
T PRK13209 99 EIMRKAIQLAQDLGIRVIQLAGYDV--Y--YEQANNETRRRFIDGLKESVELASRASVTLAFEIM 159 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccc--c--ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeec
Confidence 4578889999999999999843211 0 01110011134467889999999999998877543
No 140
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=70.79 E-value=1e+02 Score=29.50 Aligned_cols=64 Identities=19% Similarity=0.223 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCC--CCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPG--QFDERVFKALDHVIVEARKNGVRLLLSL 140 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg--~~de~~l~~lD~~l~~A~~~Gi~vil~l 140 (430)
.+.+++.+.++.+++.|+.+==+++ .+ .|..- .... .+|++.+....++++..+++|++|++.+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~l-D~-~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~ 86 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVL-DD-DYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWI 86 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEE-Cc-ccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEe
Confidence 3678899999999999988555433 22 23211 1122 4677778888999999999999998854
No 141
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=70.10 E-value=12 Score=33.71 Aligned_cols=65 Identities=14% Similarity=0.041 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
.+.+++.++.++.+|...++++......... .....--+...+.|+++.+.|+++|+++.+-.+.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~--~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 134 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPE--DDTEENWERLAENLRELAEIAEEYGVRIALENHP 134 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTT--SSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccC--CCHHHHHHHHHHHHHHHHhhhhhhcceEEEeccc
Confidence 5678899999999999999996531000000 0000112456789999999999999998876543
No 142
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=69.68 E-value=23 Score=35.43 Aligned_cols=76 Identities=20% Similarity=0.252 Sum_probs=52.8
Q ss_pred CCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHH
Q 014151 52 DGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARK 131 (430)
Q Consensus 52 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~ 131 (430)
+++.+.++|-+. ..+.+++.+.-+.+++.|.+++|...|-. .++|..|..-.-+.|..+.+.|++
T Consensus 91 ~~~~~~IAGPCs---------iEs~e~~~~~A~~lk~~ga~~~r~~~fKp------RTsp~sf~G~g~~gL~~L~~~~~~ 155 (335)
T PRK08673 91 GGKPVVIAGPCS---------VESEEQILEIARAVKEAGAQILRGGAFKP------RTSPYSFQGLGEEGLKLLAEAREE 155 (335)
T ss_pred CCceEEEEecCc---------cCCHHHHHHHHHHHHHhchhhccCcEecC------CCCCcccccccHHHHHHHHHHHHH
Confidence 445566667432 12578888888899999999999877632 123433433335667777888999
Q ss_pred cCCEEEEeccC
Q 014151 132 NGVRLLLSLVN 142 (430)
Q Consensus 132 ~Gi~vil~l~~ 142 (430)
.||.++-+.++
T Consensus 156 ~Gl~v~tev~d 166 (335)
T PRK08673 156 TGLPIVTEVMD 166 (335)
T ss_pred cCCcEEEeeCC
Confidence 99999988775
No 143
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=69.34 E-value=35 Score=34.50 Aligned_cols=79 Identities=27% Similarity=0.291 Sum_probs=56.5
Q ss_pred EEE-CCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHH
Q 014151 49 FML-DGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIV 127 (430)
Q Consensus 49 f~~-~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~ 127 (430)
+.+ +|+++++.|-+.- .+.+.+.+.-+.+++.|++.+|--.|. -.++|..|..-..+.+..+-+
T Consensus 112 ~~~g~~~~~~iaGpc~i---------E~~~~~~~~A~~lk~~g~~~~r~~~~k------pRtsp~~f~g~~~e~l~~L~~ 176 (360)
T PRK12595 112 EVIGDGNQSFIFGPCSV---------ESYEQVEAVAKALKAKGLKLLRGGAFK------PRTSPYDFQGLGVEGLKILKQ 176 (360)
T ss_pred EEecCCCeeeEEecccc---------cCHHHHHHHHHHHHHcCCcEEEccccC------CCCCCccccCCCHHHHHHHHH
Confidence 444 5677777776421 146778888888999999999963331 123455555555678888889
Q ss_pred HHHHcCCEEEEeccC
Q 014151 128 EARKNGVRLLLSLVN 142 (430)
Q Consensus 128 ~A~~~Gi~vil~l~~ 142 (430)
.|++.||.++-+.++
T Consensus 177 ~~~~~Gl~~~t~v~d 191 (360)
T PRK12595 177 VADEYGLAVISEIVN 191 (360)
T ss_pred HHHHcCCCEEEeeCC
Confidence 999999999988775
No 144
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=69.03 E-value=1.2e+02 Score=29.85 Aligned_cols=112 Identities=14% Similarity=0.146 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhhhhhhh
Q 014151 80 GAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWE 159 (430)
Q Consensus 80 ~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~ 159 (430)
.+..+.+++.|+..||++-- |+ .+|.+-..-||.|++.+.+. . -..-
T Consensus 16 ~~vv~l~ks~~i~~vri~d~---------------~~-------~iL~a~a~S~i~v~v~vpN~--~------l~~l--- 62 (310)
T PF00332_consen 16 CKVVSLLKSNGITKVRIYDA---------------DP-------SILRAFAGSGIEVMVGVPNE--D------LASL--- 62 (310)
T ss_dssp HHHHHHHHHTT--EEEESS-----------------H-------HHHHHHTTS--EEEEEE-GG--G------HHHH---
T ss_pred HHHHHHHHhcccccEEeecC---------------cH-------HHHHHHhcCCceeeeccChH--H------HHHh---
Confidence 34455568899999999421 11 56777778899999987642 0 0000
Q ss_pred hCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHh
Q 014151 160 EGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKS 239 (430)
Q Consensus 160 ~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~ 239 (430)
...+.....+++.=+.. |...-.|-...++||...... ...+..=++.+..++++
T Consensus 63 ---------------a~~~~~A~~Wv~~nv~~--------~~~~~~i~~i~VGnEv~~~~~--~~~lvpAm~ni~~aL~~ 117 (310)
T PF00332_consen 63 ---------------ASSQSAAGSWVRTNVLP--------YLPAVNIRYIAVGNEVLTGTD--NAYLVPAMQNIHNALTA 117 (310)
T ss_dssp ---------------HHHHHHHHHHHHHHTCT--------CTTTSEEEEEEEEES-TCCSG--GGGHHHHHHHHHHHHHH
T ss_pred ---------------ccCHHHHhhhhhhcccc--------cCcccceeeeecccccccCcc--ceeeccHHHHHHHHHHh
Confidence 11233344555555555 555556888899999876532 12344444555666664
Q ss_pred c--CCCCEEEEc
Q 014151 240 I--DKKHLVTVG 249 (430)
Q Consensus 240 ~--dp~~lV~~G 249 (430)
. +-..-|+..
T Consensus 118 ~~L~~~IkVst~ 129 (310)
T PF00332_consen 118 AGLSDQIKVSTP 129 (310)
T ss_dssp TT-TTTSEEEEE
T ss_pred cCcCCcceeccc
Confidence 3 334445543
No 145
>PF09928 DUF2160: Predicted small integral membrane protein (DUF2160); InterPro: IPR018678 The members of this family of hypothetical prokaryotic proteins have no known function. It is thought that they are transmembrane proteins, but their function has not been inferred yet.
Probab=67.94 E-value=4.4 Score=31.88 Aligned_cols=41 Identities=20% Similarity=0.463 Sum_probs=33.5
Q ss_pred hhhhhHHHHHHHHHHhhCCccccCCCCCCCCcEEEe---CCeEE
Q 014151 10 FPIIGFASCVAFIYMSFGGLNVSYPKEPEMGFVTRN---GTHFM 50 (430)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gfv~~~---g~~f~ 50 (430)
.|+..|+.|++..++...-.....|..++.||+... |+|+.
T Consensus 6 ~ptA~FF~~I~~~L~~mtvwe~~~P~~~R~GfLpi~TTRGDRLF 49 (88)
T PF09928_consen 6 WPTAIFFICIALMLAGMTVWEIRSPTVERKGFLPIETTRGDRLF 49 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCCcCceecccCCCcchhH
Confidence 588999999999999988887888888899998665 45543
No 146
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=67.81 E-value=27 Score=34.17 Aligned_cols=95 Identities=16% Similarity=0.294 Sum_probs=61.3
Q ss_pred HHHHHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccC
Q 014151 123 DHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRN 202 (430)
Q Consensus 123 D~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~ 202 (430)
.+++..|+++|++|++.+.+ |.. ++.. . ..-..+..|++.++.|.+-+..++++ |+=
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~-~~~-~~~~--~-----------~~~~~~l~~~~~r~~fi~~iv~~l~~--------~~~ 104 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITN-LTN-GNFD--S-----------ELAHAVLSNPEARQRLINNILALAKK--------YGY 104 (313)
T ss_pred HHHHHHHHHCCCeEEEEEec-CCC-CCCC--H-----------HHHHHHhcCHHHHHHHHHHHHHHHHH--------hCC
Confidence 36799999999999998864 321 1110 0 00123356888999998888888888 765
Q ss_pred CCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEE
Q 014151 203 DPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTV 248 (430)
Q Consensus 203 ~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~ 248 (430)
+--.+-||-. .. .+.+.+..+++++...+++. +.++++
T Consensus 105 DGidiDwE~~---~~---~d~~~~~~fl~~lr~~l~~~--~~~lsv 142 (313)
T cd02874 105 DGVNIDFENV---PP---EDREAYTQFLRELSDRLHPA--GYTLST 142 (313)
T ss_pred CcEEEecccC---CH---HHHHHHHHHHHHHHHHhhhc--CcEEEE
Confidence 5555556532 11 13567888899999888753 334444
No 147
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=64.77 E-value=50 Score=32.65 Aligned_cols=127 Identities=13% Similarity=0.114 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccC--CCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcch
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQIS--PGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQ 152 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~--pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~ 152 (430)
+.+++.+.++.+++.|+.+==++. .. .|-. ... .-.+|++.|....++++..+++|++|++.++..-.. +.+.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~l-D~-~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~--~~~~ 96 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQ-DW-FYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGP--ETEN 96 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEE-ec-hhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCC--CChh
Confidence 678899999999999876544432 21 1100 001 123577777788899999999999999865432110 1111
Q ss_pred hhhhhhh-------hCCC-----CCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCC
Q 014151 153 YVNWAWE-------EGIG-----ISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRC 217 (430)
Q Consensus 153 y~~W~~~-------~G~~-----~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~ 217 (430)
|..-... .|.. .+....--+++|++++.+.+.+++.+.. ...-.-|.=+|||..
T Consensus 97 y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~-----------~Gvdg~w~D~~Ep~~ 162 (319)
T cd06591 97 YKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYD-----------KGVDAWWLDAAEPEY 162 (319)
T ss_pred HHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhc-----------CCCcEEEecCCCCCc
Confidence 2111100 0100 0001112268899998888777654332 222334666899864
No 148
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=63.87 E-value=20 Score=34.05 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 77 ARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 77 ~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
+.+++.++.++++|...|++.... .+. ...+....+...+.|.++.+.|+++||++.+-.++
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~---~~~-~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n 146 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGK---TPA-GFSSEQIHATLVENLRYAANMLMKEDILLLIEPIN 146 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCC---CCC-CCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 457888999999999999984311 100 00011112344577889999999999999886544
No 149
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=63.60 E-value=76 Score=30.91 Aligned_cols=131 Identities=14% Similarity=0.153 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccc------c--CCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcc
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQ------I--SPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQ 145 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~------~--~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~ 145 (430)
.+.+++++.++.+++.|+.+==+|. |..|.... . ..-.+|++.|....++++..++.|++|++-++..-.
T Consensus 22 ~s~~ev~~v~~~~r~~~iP~D~i~l--D~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~ 99 (292)
T cd06595 22 YSDEEYLALMDRFKKHNIPLDVLVI--DMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADG 99 (292)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEE--ecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcc
Confidence 3678999999999999987544432 11232100 0 112567777778889999999999999987654210
Q ss_pred cCCCcchhhhhhhhhCCCCCCCC--CCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCC
Q 014151 146 AYGGKTQYVNWAWEEGIGISSSN--DSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRC 217 (430)
Q Consensus 146 ~~gg~~~y~~W~~~~G~~~~~~~--~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~ 217 (430)
.-...+.|.......+....... .--+++|++++.+.+.+++.+.. + ..-.-|.=+|||..
T Consensus 100 ~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~--------~---Gidg~W~D~~E~~~ 162 (292)
T cd06595 100 IRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEK--------Q---GVDFWWLDWQQGNR 162 (292)
T ss_pred cCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHh--------c---CCcEEEecCCCCcc
Confidence 00112234443333222111111 11257898887665555443332 2 22223566899864
No 150
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=63.35 E-value=1.8e+02 Score=29.58 Aligned_cols=199 Identities=15% Similarity=0.224 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccc
Q 014151 121 ALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEY 200 (430)
Q Consensus 121 ~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~y 200 (430)
++..=|+-|+.+||||+|.|-. +...|. |-.|.++.......|..+..-. -.-+++
T Consensus 91 qi~~di~~CQS~GiKVlLSLGG------~~GnYs----------------~~~d~dA~~fA~~LWn~Fg~G~--~S~RPf 146 (568)
T KOG4701|consen 91 QIETDIQVCQSNGIKVLLSLGG------YNGNYS----------------LNNDDDATNFAFQLWNIFGSGE--DSYRPF 146 (568)
T ss_pred hhhhHHHHHHhcCeEEEEeccC------ccccee----------------eccchhHHHHHHHHHHHhcCCc--cccCcc
Confidence 4556689999999999998732 111111 1123334333344555544331 112233
Q ss_pred cCCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCccchhhccCcchhhc
Q 014151 201 RNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPEMWASALGSDFIRN 280 (430)
Q Consensus 201 k~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~w~~~~g~df~~~ 280 (430)
++ ..|-+++..=|-+.. ..+.+..+++.. |=+.+|++....|.. .+..|+++ .| ..
T Consensus 147 g~-AVvDGfDF~IE~g~~-----~~ysaLA~~L~~-~Fa~~~r~yYLsaAP---QCP~PD~~----------~G----~a 202 (568)
T KOG4701|consen 147 GK-AVVDGFDFEIEKGTN-----TAYSALAKRLLE-IFASDPRRYYLSAAP---QCPVPDHT----------LG----KA 202 (568)
T ss_pred cc-hhccceeeeeecCCc-----chHHHHHHHHHH-HHccCCceEEeccCC---CCCCCchh----------hh----hh
Confidence 22 234444443332221 122222222221 224578887776532 22333221 11 12
Q ss_pred cCCCCcceEEeeecCCCCCCCcchh--hhHHHHHHHHHHHHHhhhhcCCCcEEEEecCCCCCC-CCC-ChhHHHHHHHHH
Q 014151 281 SNNDNIDFASVHIYPDHWFHDLEFE--DDLKFVTKWMLSHIEDGDKELNKPVFFTEYGLSNLI-KGF-EPSLRDKLYKTI 356 (430)
Q Consensus 281 ~~~~~iD~~s~H~Y~~~w~~~~~~~--~~~~~~~~~l~~~~~~a~~~~gkPv~v~EfG~~~~~-~~~-~~~~r~~~~~~~ 356 (430)
+....+||+.+.+|.... |... ........|+.-.-..+.+ -+--+++|==|..... .|+ ++ ..+.+++
T Consensus 203 L~~~~fDf~~IQFYNN~~---CS~SsG~~Q~~fDsW~~ya~~~a~n-Kn~~lFLGLPg~~~AAGSGYIsp---~~Lt~~~ 275 (568)
T KOG4701|consen 203 LSENSFDFLSIQFYNNST---CSGSSGSRQSTFDAWVEYAEDSAYN-KNTSLFLGLPGHQNAAGSGYISP---KNLTRDL 275 (568)
T ss_pred hhccccceEEEEeecCCC---cccccCcccccHHHHHHHHhhhccc-ccceEEeeccCCcccccCCccCc---hHHHHHH
Confidence 345679999999997431 1111 0112345666543333322 3345788777765443 233 22 3445555
Q ss_pred HHHHHHHHhcCCCcccceeeee
Q 014151 357 LDIVYKSAKRKRSGAGALIWQL 378 (430)
Q Consensus 357 ~~~~~~~~~~~~~~~G~~~W~~ 378 (430)
+..+.+ .....|.+.|.-
T Consensus 276 l~~~a~----S~~fGGv~LWd~ 293 (568)
T KOG4701|consen 276 LNYKAN----STLFGGVTLWDT 293 (568)
T ss_pred HHhhhh----ccccccEEEeec
Confidence 554433 235778999975
No 151
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=63.29 E-value=31 Score=37.29 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=28.1
Q ss_pred EEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccc
Q 014151 56 LYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAF 99 (430)
Q Consensus 56 ~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~ 99 (430)
..++|.|..- ...+..+.++..++.+++.|+.++|++-.
T Consensus 80 mL~Rg~N~vG-----y~~~~d~vv~~~v~~a~~~Gidv~Rifd~ 118 (596)
T PRK14042 80 MLLRGQNLLG-----YRNYADDVVRAFVKLAVNNGVDVFRVFDA 118 (596)
T ss_pred EEeccccccc-----cccCChHHHHHHHHHHHHcCCCEEEEccc
Confidence 4466777421 11234678999999999999999999653
No 152
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=63.22 E-value=56 Score=32.18 Aligned_cols=98 Identities=22% Similarity=0.388 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHc-CCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCccccc
Q 014151 121 ALDHVIVEARKN-GVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVE 199 (430)
Q Consensus 121 ~lD~~l~~A~~~-Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~ 199 (430)
.+.++...++++ +++|++.+-. |... . .+ .....+++.++.|.+-+..++++
T Consensus 53 ~~~~~~~l~~~~~~~kvl~svgg-~~~s---~---~f------------~~~~~~~~~r~~fi~~i~~~~~~-------- 105 (334)
T smart00636 53 NFGQLKALKKKNPGLKVLLSIGG-WTES---D---NF------------SSMLSDPASRKKFIDSIVSFLKK-------- 105 (334)
T ss_pred hHHHHHHHHHhCCCCEEEEEEeC-CCCC---c---ch------------hHHHCCHHHHHHHHHHHHHHHHH--------
Confidence 455666666665 9999998743 3210 0 01 12345788899998888888888
Q ss_pred ccCCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhc---CCCCEEEEc
Q 014151 200 YRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSI---DKKHLVTVG 249 (430)
Q Consensus 200 yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~---dp~~lV~~G 249 (430)
|+=|--.+-||- |.... .+.+.+..+++++...+++. .++.+|++.
T Consensus 106 ~~~DGidiDwE~---~~~~~-~d~~~~~~ll~~lr~~l~~~~~~~~~~~lsi~ 154 (334)
T smart00636 106 YGFDGIDIDWEY---PGARG-DDRENYTALLKELREALDKEGAEGKGYLLTIA 154 (334)
T ss_pred cCCCeEEECCcC---CCCCc-cHHHHHHHHHHHHHHHHHHhcccCCceEEEEE
Confidence 654433333543 22211 13467888999999888765 556677764
No 153
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=62.99 E-value=1.3e+02 Score=28.46 Aligned_cols=132 Identities=7% Similarity=0.028 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCC-ccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhhh
Q 014151 77 ARVGAMLQAGAKMGLTVCRTWAFNDGGYN-SLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVN 155 (430)
Q Consensus 77 ~~~~~~~~~~~~~G~n~vR~~~~~~g~~~-~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~ 155 (430)
..+++.-+.+++.|+.++=+...+. .++ .+...+...-+..++.+++.++.|++.|.+.|+.... ..
T Consensus 47 ~~~~~l~~~~~~~gl~v~s~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~-------~~---- 114 (275)
T PRK09856 47 GGIKQIKALAQTYQMPIIGYTPETN-GYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAA-------HA---- 114 (275)
T ss_pred hHHHHHHHHHHHcCCeEEEecCccc-CcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCC-------CC----
Confidence 4456666677788998765533221 111 0000011112457889999999999999999864211 00
Q ss_pred hhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCCCChHHHHHHHHHHHH
Q 014151 156 WAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSA 235 (430)
Q Consensus 156 W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~ 235 (430)
+. . -+..+..+.+.+.++.++.. -+...-.++.|..+......-.+ ..++..
T Consensus 115 -----~~---~-----~~~~~~~~~~~~~l~~l~~~--------a~~~gv~l~iE~~~~~~~~~~~t-------~~~~~~ 166 (275)
T PRK09856 115 -----GY---L-----TPPNVIWGRLAENLSELCEY--------AENIGMDLILEPLTPYESNVVCN-------ANDVLH 166 (275)
T ss_pred -----CC---C-----CCHHHHHHHHHHHHHHHHHH--------HHHcCCEEEEecCCCCcccccCC-------HHHHHH
Confidence 00 0 12345667777778777776 44555566777554222111001 355667
Q ss_pred HHHhcC-CCCEEEE
Q 014151 236 FVKSID-KKHLVTV 248 (430)
Q Consensus 236 ~Ir~~d-p~~lV~~ 248 (430)
.+++++ |+.-+.+
T Consensus 167 l~~~~~~~~v~~~~ 180 (275)
T PRK09856 167 ALALVPSPRLFSMV 180 (275)
T ss_pred HHHHcCCCcceeEE
Confidence 778777 5544443
No 154
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=62.87 E-value=12 Score=35.95 Aligned_cols=61 Identities=23% Similarity=0.279 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
.+.+++.++.++++|.+.|+++... +.. . .....-+...+.+.++++.|+++||++.+-.+
T Consensus 84 ~~~~~~~i~~A~~lG~~~v~~~~g~---~~~-~-~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~ 144 (279)
T cd00019 84 IERLKDEIERCEELGIRLLVFHPGS---YLG-Q-SKEEGLKRVIEALNELIDKAETKGVVIALETM 144 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCC---CCC-C-CHHHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 4567889999999999999985532 110 0 00111145568899999999999999877543
No 155
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=62.14 E-value=1.3e+02 Score=29.66 Aligned_cols=93 Identities=12% Similarity=0.157 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCccccc
Q 014151 120 KALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVE 199 (430)
Q Consensus 120 ~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~ 199 (430)
..+.+-+..|+++|++|++++- |.. + . ....+++.++.|.+.+..++..
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiG-------G~~---------~----~---~~~~~~~~~~~fa~sl~~~~~~-------- 108 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIG-------GAN---------G----H---VDLNHTAQEDNFVDSIVAIIKE-------- 108 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEe-------CCC---------C----c---cccCCHHHHHHHHHHHHHHHHH--------
Confidence 4567778899999999999862 210 0 0 0134667788888888887776
Q ss_pred ccCCCceeEEeecCCCCCCCCC---ChHHHHHHHHHHHHHHHhcCCCCEEEEcc
Q 014151 200 YRNDPTIFAWELINEPRCMSDP---SGDTLQDWIDEMSAFVKSIDKKHLVTVGL 250 (430)
Q Consensus 200 yk~~p~I~~wel~NEp~~~~~~---~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~ 250 (430)
|. +-+.++-=|....... +.+.+...++++.+ +++++-+||+..
T Consensus 109 ~g----~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~---~~~~~~~lT~AP 155 (312)
T cd02871 109 YG----FDGLDIDLESGSNPLNATPVITNLISALKQLKD---HYGPNFILTMAP 155 (312)
T ss_pred hC----CCeEEEecccCCccCCcHHHHHHHHHHHHHHHH---HcCCCeEEEECC
Confidence 64 4456665554322111 11233333333333 234566777653
No 156
>PRK14565 triosephosphate isomerase; Provisional
Probab=61.34 E-value=90 Score=29.60 Aligned_cols=118 Identities=17% Similarity=0.157 Sum_probs=62.8
Q ss_pred HHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCC
Q 014151 84 QAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIG 163 (430)
Q Consensus 84 ~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~ 163 (430)
..++++|++.+=+ .+++- ...|+|. =+.+.+=+..|.++||.+|++.-..- .. ..
T Consensus 79 ~mLkd~G~~~vii-GHSER--------R~~f~Et-d~~V~~Kv~~al~~gl~pIvCiGE~~---------e~--r~---- 133 (237)
T PRK14565 79 KMLKECGCSYVIL-GHSER--------RSTFHET-DSDIRLKAESAIESGLIPIICVGETL---------ED--RE---- 133 (237)
T ss_pred HHHHHcCCCEEEE-Ccccc--------cCcCCcC-HHHHHHHHHHHHHCCCEEEEEcCCCH---------HH--HH----
Confidence 3478999998877 33331 1223333 12333445899999999999873210 00 00
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 014151 164 ISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKK 243 (430)
Q Consensus 164 ~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~ 243 (430)
.....+...+-++..+.- . .+-|+|| ||-+........-.+-++++.+.||+..++
T Consensus 134 ----------~~~~~~~~~~Ql~~~l~~--------~--~~ivIAY----EPvWAIGtG~~a~~e~i~~~~~~Ir~~~~~ 189 (237)
T PRK14565 134 ----------NGMTKDVLLEQCSNCLPK--------H--GEFIIAY----EPVWAIGGSTIPSNDAIAEAFEIIRSYDSK 189 (237)
T ss_pred ----------ccChHHHHHHHHHHHhcC--------C--CCEEEEE----CCHHHhCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 011222333333443332 2 3567777 454422110011123467888999998878
Q ss_pred CEEEEcc
Q 014151 244 HLVTVGL 250 (430)
Q Consensus 244 ~lV~~G~ 250 (430)
..|..|.
T Consensus 190 ~~IlYGG 196 (237)
T PRK14565 190 SHIIYGG 196 (237)
T ss_pred ceEEEcC
Confidence 7888873
No 157
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=60.12 E-value=16 Score=40.20 Aligned_cols=58 Identities=22% Similarity=0.493 Sum_probs=40.3
Q ss_pred HHHHHHcCCCEEEEccc---cC-------C-----CCCcc---ccCCCCCC-----hHHHHHHHHHHHHHHHcCCEEEEe
Q 014151 83 LQAGAKMGLTVCRTWAF---ND-------G-----GYNSL---QISPGQFD-----ERVFKALDHVIVEARKNGVRLLLS 139 (430)
Q Consensus 83 ~~~~~~~G~n~vR~~~~---~~-------g-----~~~~~---~~~pg~~d-----e~~l~~lD~~l~~A~~~Gi~vil~ 139 (430)
|+.+|++|+++|.+... .+ + +|.++ -|+ +.|. ......|..+|.++.++||.||++
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~-~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPE-GRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCC-ccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 99999999999998432 11 0 12221 122 2332 246889999999999999999998
Q ss_pred cc
Q 014151 140 LV 141 (430)
Q Consensus 140 l~ 141 (430)
+.
T Consensus 285 VV 286 (697)
T COG1523 285 VV 286 (697)
T ss_pred Ee
Confidence 64
No 158
>PLN03244 alpha-amylase; Provisional
Probab=58.17 E-value=1.2e+02 Score=34.05 Aligned_cols=125 Identities=11% Similarity=0.136 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccCC-ccc--------CCCcchhhhhhhh--hCCCCC-CCCCCCCCCHHHHHHHHHHHH
Q 014151 119 FKALDHVIVEARKNGVRLLLSLVNN-LQA--------YGGKTQYVNWAWE--EGIGIS-SSNDSFFFDPSIHKYFKHYVK 186 (430)
Q Consensus 119 l~~lD~~l~~A~~~Gi~vil~l~~~-w~~--------~gg~~~y~~W~~~--~G~~~~-~~~~~f~~d~~~~~~~~~~~~ 186 (430)
.+.|.++|++|.++||.|||++..+ ... +.|.+. .|... .|.... +...-.|..+++++.+..-++
T Consensus 440 PeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~--~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~ 517 (872)
T PLN03244 440 PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSND--CYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLN 517 (872)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCcc--ceeccCCCCccCCCCCceecCCCHHHHHHHHHHHH
Confidence 4578999999999999999996532 110 111110 01110 000000 011122456889999888888
Q ss_pred HHHhccCCcccccccCCCceeEEeecCC---------CCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEcc
Q 014151 187 TVLTRKNTITGVEYRNDPTIFAWELINE---------PRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGL 250 (430)
Q Consensus 187 ~lv~R~n~~tg~~yk~~p~I~~wel~NE---------p~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~ 250 (430)
.-++.. -+-|.++-.-.+++-.+-+.+ |+... ......+++.+...|++..|+. |+++.
T Consensus 518 yWleEy-hIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~---d~dAv~fL~laN~~ih~~~P~~-itIAE 585 (872)
T PLN03244 518 WWITEY-QIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYV---DKDALMYLILANEILHALHPKI-ITIAE 585 (872)
T ss_pred HHHHHh-CcCcceeecchhheeeccccccccCCccccccccC---CchHHHHHHHHHHHHHHhCCCe-EEEEE
Confidence 888651 122333322233332222211 11111 1245567888888899999984 44544
No 159
>PRK12677 xylose isomerase; Provisional
Probab=57.84 E-value=22 Score=36.21 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcC--CEEEEec
Q 014151 77 ARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNG--VRLLLSL 140 (430)
Q Consensus 77 ~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~G--i~vil~l 140 (430)
+.+.+-++.++++|.+.|.+|.-.++..-..+......-+...+.|+.+.+.|+++| |++.|..
T Consensus 114 ~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEp 179 (384)
T PRK12677 114 RKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEP 179 (384)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEcc
Confidence 346788899999999999998643321101111110111334467778889998855 8887754
No 160
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=57.81 E-value=75 Score=29.83 Aligned_cols=78 Identities=23% Similarity=0.301 Sum_probs=51.7
Q ss_pred CCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHH
Q 014151 52 DGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARK 131 (430)
Q Consensus 52 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~ 131 (430)
+|+.+-+.|.=.- .+.. .-.+.+...++.+++.|++-|.+++|.||... .| ..+...|.++.+.+.+
T Consensus 26 ~~~~lHl~GLlSd----GGVH-Sh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt----~P----~S~~~yl~~l~~~l~~ 92 (223)
T PF06415_consen 26 NGGRLHLMGLLSD----GGVH-SHIDHLFALIKLAKKQGVKKVYVHAFTDGRDT----PP----KSALKYLEELEEKLAE 92 (223)
T ss_dssp TT--EEEEEEESS-----SSS---HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-----T----TTHHHHHHHHHHHHHH
T ss_pred cCCeEEEEEEecC----CCcc-ccHHHHHHHHHHHHHcCCCEEEEEEecCCCCC----Cc----chHHHHHHHHHHHHHh
Confidence 4566777776421 1110 12577889999999999999999999997431 12 4568889999999999
Q ss_pred cCCEEEEeccC
Q 014151 132 NGVRLLLSLVN 142 (430)
Q Consensus 132 ~Gi~vil~l~~ 142 (430)
.|+--|-++..
T Consensus 93 ~~~g~IAsv~G 103 (223)
T PF06415_consen 93 IGIGRIASVSG 103 (223)
T ss_dssp HTCTEEEEEEE
T ss_pred hCCceEEEEec
Confidence 88866666653
No 161
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=57.53 E-value=1.8e+02 Score=27.73 Aligned_cols=102 Identities=16% Similarity=0.187 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCC----hHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCc
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFD----ERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGK 150 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~d----e~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~ 150 (430)
+.+..++.-+.+++.|+.+.-+..... . .+ .++..+ +..++.+.+.++.|++.|...|.. +. +.
T Consensus 55 ~~~~~~~l~~~l~~~gl~i~~~~~~~~--~-~~--~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~-~~------~~ 122 (283)
T PRK13209 55 SREQRLALVNALVETGFRVNSMCLSAH--R-RF--PLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQL-AG------YD 122 (283)
T ss_pred CHHHHHHHHHHHHHcCCceeEEecccc--c-cc--CCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE-CC------cc
Confidence 456677777888899998776532111 0 01 112222 456788999999999999998752 21 10
Q ss_pred chhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecC
Q 014151 151 TQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELIN 213 (430)
Q Consensus 151 ~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~N 213 (430)
.|. + ..+++..+.+.+.++.+++. -+.+...+++|..+
T Consensus 123 ----~~~---~----------~~~~~~~~~~~~~l~~l~~~--------A~~~GV~i~iE~~~ 160 (283)
T PRK13209 123 ----VYY---E----------QANNETRRRFIDGLKESVEL--------ASRASVTLAFEIMD 160 (283)
T ss_pred ----ccc---c----------ccHHHHHHHHHHHHHHHHHH--------HHHhCCEEEEeecC
Confidence 000 0 12356677778888888876 55556677787654
No 162
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=57.35 E-value=31 Score=33.14 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=52.7
Q ss_pred CCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHH
Q 014151 52 DGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARK 131 (430)
Q Consensus 52 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~ 131 (430)
+|++++++|-+.- .+.+...+.-+.+++.|.++.|-+.|-. .++|..|..-.-+.|..+-+.|++
T Consensus 23 ~~~~~~IAGpc~i---------e~~~~~~~~A~~lk~~~~k~~r~~~~Kp------Rtsp~s~~g~g~~gl~~l~~~~~~ 87 (260)
T TIGR01361 23 EGSPIVIAGPCSV---------ESEEQIMETARFVKEAGAKILRGGAFKP------RTSPYSFQGLGEEGLKLLRRAADE 87 (260)
T ss_pred CCcEEEEEeCCcc---------CCHHHHHHHHHHHHHHHHHhccCceecC------CCCCccccccHHHHHHHHHHHHHH
Confidence 5677778885421 2467788888889999999888655421 123333444445667777788999
Q ss_pred cCCEEEEeccC
Q 014151 132 NGVRLLLSLVN 142 (430)
Q Consensus 132 ~Gi~vil~l~~ 142 (430)
.||.++-+.++
T Consensus 88 ~Gl~~~t~~~d 98 (260)
T TIGR01361 88 HGLPVVTEVMD 98 (260)
T ss_pred hCCCEEEeeCC
Confidence 99999988775
No 163
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=56.96 E-value=19 Score=34.81 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhhhhh
Q 014151 79 VGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWA 157 (430)
Q Consensus 79 ~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~ 157 (430)
.++.|+.++++|+.-|-+ -|-+ .-++...+.++++++.|.+|.|.| ++|...-..|=..+||+..
T Consensus 108 ~~~~f~~~~~~Gv~GvKi-dF~~-----------~d~Q~~v~~y~~i~~~AA~~~Lmv--nfHg~~kPtG~~RTyPN~m 172 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKI-DFMD-----------RDDQEMVNWYEDILEDAAEYKLMV--NFHGATKPTGLRRTYPNLM 172 (273)
T ss_dssp HHHHHHHHHHCTEEEEEE-E--S-----------STSHHHHHHHHHHHHHHHHTT-EE--EETTS---TTHHHCSTTEE
T ss_pred HHHHHHHHHHcCCCEEee-CcCC-----------CCCHHHHHHHHHHHHHHHHcCcEE--EecCCcCCCcccccCccHH
Confidence 477788888888888887 2211 236889999999999999998866 5665322222223455543
No 164
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=56.63 E-value=41 Score=36.75 Aligned_cols=38 Identities=32% Similarity=0.820 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHHHHHhccCCcccccccCC-CceeEEeecCCCCCCC
Q 014151 172 FFDPSIHKYFKHYVKTVLTRKNTITGVEYRND-PTIFAWELINEPRCMS 219 (430)
Q Consensus 172 ~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~-p~I~~wel~NEp~~~~ 219 (430)
+.+|++++.++.... ..| |..+ |.+..|.=+|||....
T Consensus 477 f~nP~~r~wW~~~fa--fd~--------y~g~t~nl~iWNDMNEPSVFn 515 (915)
T KOG1066|consen 477 FINPEARKWWKSQFA--FDR--------YEGSTPNLFIWNDMNEPSVFN 515 (915)
T ss_pred ccCHHHHHHHhhhcc--ccc--------ccCCCCceEEeccCCCccccC
Confidence 567999998888876 355 6654 6799999999998653
No 165
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=56.20 E-value=1.4e+02 Score=33.57 Aligned_cols=162 Identities=14% Similarity=0.205 Sum_probs=86.9
Q ss_pred CCHHHHHHHHHHHHHcCCC--EEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcc
Q 014151 74 YSRARVGAMLQAGAKMGLT--VCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKT 151 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n--~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~ 151 (430)
.+++.+.+.++.+++..+- ++++ =++ .|.. .-..-.||++.|-..+.+++..++.||++++-+...-.. ..+
T Consensus 277 ~~e~~v~~~i~~~~~~~IP~d~~~l--D~~-~~~~-~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~--d~~ 350 (772)
T COG1501 277 YDEDEVLEFIDEMRERDIPLDVFVL--DID-FWMD-NWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQ--DSP 350 (772)
T ss_pred ccHHHHHHHHhhcccccCcceEEEE--eeh-hhhc-cccceEECcccCCCHHHHHHHHHhcCceEEEEecccccc--CCc
Confidence 3577888888888887754 4444 111 1221 111224667777777899999999999999865321100 001
Q ss_pred hhhhhhhhhCCCCC------------C--CCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCC
Q 014151 152 QYVNWAWEEGIGIS------------S--SNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRC 217 (430)
Q Consensus 152 ~y~~W~~~~G~~~~------------~--~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~ 217 (430)
.|.. +...|.-+. . ..---|+||++++.+.+.... . +.+-.-..-|.=+|||..
T Consensus 351 ~~~e-~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~---~--------l~d~Gv~g~W~D~nEp~~ 418 (772)
T COG1501 351 LFKE-AIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKK---N--------LLDLGVDGFWNDMNEPEP 418 (772)
T ss_pred hHHH-HHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHh---H--------HHhcCccEEEccCCCCcc
Confidence 1110 000110000 0 011126889999988853322 2 333334445777999987
Q ss_pred CCCC------ChHHH-----HHHHHHHHHHHHhcCCC-CEEEEccCCc
Q 014151 218 MSDP------SGDTL-----QDWIDEMSAFVKSIDKK-HLVTVGLEGF 253 (430)
Q Consensus 218 ~~~~------~~~~~-----~~w~~~~~~~Ir~~dp~-~lV~~G~~g~ 253 (430)
.... +...+ .-+.+...+++|+..|+ +++.+.=.|+
T Consensus 419 ~~~~~~~~g~~~~~~~N~yp~~~~~a~~~~~~~~~~~~r~~~lsRsg~ 466 (772)
T COG1501 419 FDGDGFGNGIDHEEMHNLYPLLYAKAVYEALKELGGNERPFILSRSGY 466 (772)
T ss_pred ccccccccccCHHHHhcchhHHHHHHHHHHHHhhcCCCceEEEEeccc
Confidence 5321 11222 23456777889999774 6665543333
No 166
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=54.43 E-value=63 Score=35.21 Aligned_cols=176 Identities=15% Similarity=0.228 Sum_probs=75.9
Q ss_pred HHHHHHHHc--CCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHH-HHHHHHHHhccCCcccccc
Q 014151 124 HVIVEARKN--GVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYF-KHYVKTVLTRKNTITGVEY 200 (430)
Q Consensus 124 ~~l~~A~~~--Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~-~~~~~~lv~R~n~~tg~~y 200 (430)
++++.|+++ +|++.+- . |. .|.|..+ | ...-|.++.....| .+++.-..+. |
T Consensus 116 ~L~~eAKkrNP~ikl~~L--~-W~-------~PgW~~~-g------~~~~~~~~~~~a~Y~~~wl~ga~~~--------~ 170 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGL--P-WG-------FPGWVGN-G------WNWPYDNPQLTAYYVVSWLLGAKKT--------H 170 (669)
T ss_dssp HHHHHHHHH-TT-EEEEE--E-S--------B-GGGGT-T------SS-TTSSHHHHHHHHHHHHHHHHHH--------H
T ss_pred hhHHHHHhhCCCCeEEEe--c-cC-------CCccccC-C------CCCcccchhhhhHHHHHHHHHHHHH--------h
Confidence 678889888 5665432 1 63 2667742 1 11224555544443 3444333233 3
Q ss_pred cCCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCccchhhccCcchhhc
Q 014151 201 RNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPEMWASALGSDFIRN 280 (430)
Q Consensus 201 k~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~w~~~~g~df~~~ 280 (430)
+ ..|--...+||-... .+|++.+...+.+.+-++.=.++.++.+.. ... +...+
T Consensus 171 g--l~idYvg~~NEr~~~--------~~~ik~lr~~l~~~gy~~vkiva~D~~~~~------------~~~----~m~~D 224 (669)
T PF02057_consen 171 G--LDIDYVGIWNERGFD--------VNYIKWLRKALNSNGYNKVKIVAADNNWES------------ISD----DMLSD 224 (669)
T ss_dssp -------EE-S-TTS-----------HHHHHHHHHHHHHTT-TT-EEEEEEE-STT------------HHH----HHHH-
T ss_pred C--CCceEechhhccCCC--------hhHHHHHHHHHhhccccceEEEEeCCCccc------------hhh----hhhcC
Confidence 3 344444568997642 368888888888877776555555544321 000 00000
Q ss_pred -cCCCCcceEEeeecCCCCCCCcchhhhHHHHHHHHHHHHHhhhhcCCCcEEEEecCCCCCCCCCChhHHHHHHHHHHHH
Q 014151 281 -SNNDNIDFASVHIYPDHWFHDLEFEDDLKFVTKWMLSHIEDGDKELNKPVFFTEYGLSNLIKGFEPSLRDKLYKTILDI 359 (430)
Q Consensus 281 -~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~a~~~~gkPv~v~EfG~~~~~~~~~~~~r~~~~~~~~~~ 359 (430)
.....+|+++.| ||..-. .+.+++ .+|||+-+|-+..-.. ... ..-+...+..
T Consensus 225 ~~l~~avdvig~H-Y~~~~~-------------------~~~a~~-~~K~lW~SE~~s~~~~----~~g-~g~~ar~ln~ 278 (669)
T PF02057_consen 225 PELRNAVDVIGYH-YPGTYS-------------------SKNAKL-TGKPLWSSEDYSTFNY----NVG-AGCWARILNR 278 (669)
T ss_dssp HHHHHH--EEEEE-S-TT----------------------HHHHH-HT-EEEEEEEE-S-TT----HHH-HHHHHHHHHH
T ss_pred HHHHhcccEeccc-cCCCCc-------------------HHHHHH-hCCCeEEcCCcccccC----cCc-hHHHHHHHHh
Confidence 012458999999 564310 011233 7999999996654322 111 1112222222
Q ss_pred HHHHHhcCCCcccceeeeecc
Q 014151 360 VYKSAKRKRSGAGALIWQLFV 380 (430)
Q Consensus 360 ~~~~~~~~~~~~G~~~W~~~~ 380 (430)
-+- .+ .....++|.+..
T Consensus 279 ~yv---~g-~mT~~I~w~lVa 295 (669)
T PF02057_consen 279 NYV---NG-RMTAYINWPLVA 295 (669)
T ss_dssp HHH---HH---SEEEEE-SEE
T ss_pred hhh---cc-ceEEEEeehhhh
Confidence 221 12 356788998875
No 167
>PLN02229 alpha-galactosidase
Probab=54.08 E-value=36 Score=35.15 Aligned_cols=76 Identities=21% Similarity=0.354 Sum_probs=49.5
Q ss_pred EEEEeeeccccccccCCCCCHHHHHHHHHHH-----HHcCCCEEEEccccCCCCCccc-cCCCCC--ChHHH-HHHHHHH
Q 014151 56 LYVNGWNSYWLMDHAVHDYSRARVGAMLQAG-----AKMGLTVCRTWAFNDGGYNSLQ-ISPGQF--DERVF-KALDHVI 126 (430)
Q Consensus 56 ~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~-----~~~G~n~vR~~~~~~g~~~~~~-~~pg~~--de~~l-~~lD~~l 126 (430)
..+.|.|.|...... .+++.+++..+.| +++|.+.|=+ .+ .|..-. .+.|.+ |++.| ..+..+.
T Consensus 62 tPpmGWnSWn~~~~~---i~E~~i~~~ad~~v~~Gl~~~Gy~yv~i---DD-gW~~~~rd~~G~l~~d~~rFP~G~k~la 134 (427)
T PLN02229 62 TPQMGWNSWNFFACN---INETVIKETADALVSTGLADLGYIHVNI---DD-CWSNLKRDSKGQLVPDPKTFPSGIKLLA 134 (427)
T ss_pred CCCceEEchhhhCcc---cCHHHHHHHHHHHHHhHHHhCCCEEEEE---cC-CcCCCCcCCCCCEEEChhhcCCcHHHHH
Confidence 346788865433322 3678888888875 8889988776 43 363221 122432 55545 3588999
Q ss_pred HHHHHcCCEEEE
Q 014151 127 VEARKNGVRLLL 138 (430)
Q Consensus 127 ~~A~~~Gi~vil 138 (430)
+..+++|||.=|
T Consensus 135 dyiH~~GlKfGI 146 (427)
T PLN02229 135 DYVHSKGLKLGI 146 (427)
T ss_pred HHHHHCCCceEE
Confidence 999999999855
No 168
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=54.08 E-value=60 Score=34.02 Aligned_cols=49 Identities=16% Similarity=0.269 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSL 140 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l 140 (430)
.+.++..++.+++.|+.++|++-..+ ..+.+...++.+++.|..+.+.+
T Consensus 104 ddvv~~fv~~a~~~Gidi~Rifd~ln----------------d~~n~~~ai~~ak~~G~~~~~~i 152 (468)
T PRK12581 104 DDIVDKFISLSAQNGIDVFRIFDALN----------------DPRNIQQALRAVKKTGKEAQLCI 152 (468)
T ss_pred chHHHHHHHHHHHCCCCEEEEcccCC----------------CHHHHHHHHHHHHHcCCEEEEEE
Confidence 46788889999999999999954321 15667788999999999877655
No 169
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=54.04 E-value=41 Score=30.96 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEE
Q 014151 78 RVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLL 137 (430)
Q Consensus 78 ~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vi 137 (430)
.++..++.++++|.+.|.+|... | ...++.|..+.++|.++|+++-
T Consensus 136 ~vetAiaml~dmG~~SiKffPm~-G-------------l~~leE~~avAkA~a~~g~~lE 181 (218)
T PF07071_consen 136 PVETAIAMLKDMGGSSIKFFPMG-G-------------LKHLEELKAVAKACARNGFTLE 181 (218)
T ss_dssp EHHHHHHHHHHTT--EEEE---T-T-------------TTTHHHHHHHHHHHHHCT-EEE
T ss_pred cHHHHHHHHHHcCCCeeeEeecC-C-------------cccHHHHHHHHHHHHHcCceeC
Confidence 47888999999999999996541 1 2347778899999999999983
No 170
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=54.01 E-value=3.2e+02 Score=31.56 Aligned_cols=64 Identities=17% Similarity=0.194 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
+.+++++.++.+++.|+-+==+|. |-.|-. .-..-.||++.|.....+++..+++|+++++-+.
T Consensus 199 sq~eV~eva~~fre~~IP~DvIwl--DidYm~-g~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iid 262 (978)
T PLN02763 199 SAKRVAEIARTFREKKIPCDVVWM--DIDYMD-GFRCFTFDKERFPDPKGLADDLHSIGFKAIWMLD 262 (978)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEE--ehhhhc-CCCceeECcccCCCHHHHHHHHHHCCCEEEEEEc
Confidence 678899999999999987655544 111210 0011245666666678899999999999977543
No 171
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=53.62 E-value=36 Score=24.89 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014151 78 RVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSL 140 (430)
Q Consensus 78 ~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l 140 (430)
..++.++.+++.|++.+=+ +|- . .+..+.++.+.++++||++++.+
T Consensus 16 ~~~~~~~~a~~~g~~~v~i---TDh--~------------~~~~~~~~~~~~~~~gi~~i~G~ 61 (67)
T smart00481 16 SPEELVKRAKELGLKAIAI---TDH--G------------NLFGAVEFYKAAKKAGIKPIIGL 61 (67)
T ss_pred CHHHHHHHHHHcCCCEEEE---eeC--C------------cccCHHHHHHHHHHcCCeEEEEE
Confidence 4778999999999999887 431 1 12223466788889999998754
No 172
>PTZ00333 triosephosphate isomerase; Provisional
Probab=52.84 E-value=1.2e+02 Score=28.98 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=33.2
Q ss_pred HHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 84 QAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 84 ~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
..++++|++.+=+ .+++- ...|.|+ -+.+.+-+..|.++||.+|++.-
T Consensus 83 ~mL~d~G~~~vii-GHSER--------R~~f~Et-d~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 83 EMLKDLGINWTIL-GHSER--------RQYFGET-NEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHcCCCEEEE-Ccccc--------cCcCCCC-cHHHHHHHHHHHHCCCEEEEEcC
Confidence 4579999998887 44431 1123222 24567788999999999999873
No 173
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=52.53 E-value=43 Score=34.15 Aligned_cols=62 Identities=21% Similarity=0.302 Sum_probs=44.9
Q ss_pred EEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEE
Q 014151 58 VNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLL 137 (430)
Q Consensus 58 ~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vi 137 (430)
++|.|.--..+ +..+.+++.++...+.|++++|+|-.-+ ..+.|...+.+++++|..+.
T Consensus 84 lRGQNlvGYrh-----yaDDvVe~Fv~ka~~nGidvfRiFDAlN----------------D~RNl~~ai~a~kk~G~h~q 142 (472)
T COG5016 84 LRGQNLVGYRH-----YADDVVEKFVEKAAENGIDVFRIFDALN----------------DVRNLKTAIKAAKKHGAHVQ 142 (472)
T ss_pred HccCccccccC-----CchHHHHHHHHHHHhcCCcEEEechhcc----------------chhHHHHHHHHHHhcCceeE
Confidence 56777422122 2468899999999999999999853211 13457788999999999887
Q ss_pred Eec
Q 014151 138 LSL 140 (430)
Q Consensus 138 l~l 140 (430)
.++
T Consensus 143 ~~i 145 (472)
T COG5016 143 GTI 145 (472)
T ss_pred EEE
Confidence 765
No 174
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=52.42 E-value=35 Score=35.49 Aligned_cols=66 Identities=21% Similarity=0.269 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccc----c---CCCCCChH---HHHHHHHHHHHHHHcCCEEEEecc
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQ----I---SPGQFDER---VFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~----~---~pg~~de~---~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
.-..+.+.|+.|+..-+|++..++..+-+. +++ | ..|.|++. .-+.+-++|+-|+-+||+|++.+.
T Consensus 196 pv~~IkrtLeaMa~nKLNVlHWHivDs~SF-Ple~~~~PeL~~kGaYs~~~vYT~eDv~evV~yarlRGIRVlpEfD 271 (542)
T KOG2499|consen 196 PVKVIKRTLEAMAANKLNVLHWHIVDSQSF-PLESPTFPELHRKGAYSPRHVYTREDVSEVVEYARLRGIRVLPEFD 271 (542)
T ss_pred cHHHHHHHHHHHHhhhhceeEEEeecCCCC-ccccCCchhhhhcCCCCcceeecHHHHHHHHHHHHhccceeeeccc
Confidence 467899999999999999999876533221 121 1 23555533 235677999999999999999763
No 175
>PLN02561 triosephosphate isomerase
Probab=52.23 E-value=2.2e+02 Score=27.25 Aligned_cols=48 Identities=8% Similarity=0.148 Sum_probs=33.2
Q ss_pred HHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 84 QAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 84 ~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
..++++|++.+=+ .+++- ...|.|. =+.+.+-+..|.++||.+|++.-
T Consensus 82 ~mL~d~G~~~vii-GHSER--------R~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 82 EMLVNLGIPWVIL-GHSER--------RALLGES-NEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred HHHHHcCCCEEEE-Ccccc--------cCccCCC-hHHHHHHHHHHHHCcCEEEEEcC
Confidence 3478999998887 33331 1234433 34566778899999999999873
No 176
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=51.85 E-value=54 Score=31.07 Aligned_cols=51 Identities=18% Similarity=0.391 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSL 140 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l 140 (430)
+..+++.++.++++|+++|=+ ++|.- .++ .+..-++|+.++++|++|+..+
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEi---S~G~~--------~i~---~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEI---SDGSM--------EIS---LEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEE---cCCcc--------CCC---HHHHHHHHHHHHhCCCeEeccc
Confidence 568899999999999999998 66521 112 2334578999999999998654
No 177
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=51.32 E-value=65 Score=26.83 Aligned_cols=23 Identities=4% Similarity=-0.061 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEE
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRT 96 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~ 96 (430)
...+.+.+.++.+++.|+..|-+
T Consensus 96 ~~~~~vv~v~d~~~~aG~~~v~l 118 (122)
T TIGR02803 96 VDYGDLMKVMNLLRQAGYLKIGL 118 (122)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE
Confidence 45677888888888888875544
No 178
>PRK09989 hypothetical protein; Provisional
Probab=51.15 E-value=36 Score=32.25 Aligned_cols=60 Identities=12% Similarity=0.078 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014151 77 ARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSL 140 (430)
Q Consensus 77 ~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l 140 (430)
+.+++.++.++++|...|+++.. +.+-...+....+...+.|.++.+.|+++|+++.+..
T Consensus 85 ~~l~~~i~~A~~lg~~~v~v~~g----~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 144 (258)
T PRK09989 85 ADIDLALEYALALNCEQVHVMAG----VVPAGEDAERYRAVFIDNLRYAADRFAPHGKRILVEA 144 (258)
T ss_pred HHHHHHHHHHHHhCcCEEEECcc----CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 44777788889999999997432 1100001111123466889999999999999998754
No 179
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=50.69 E-value=1.4e+02 Score=29.04 Aligned_cols=131 Identities=15% Similarity=0.214 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHhccCCcccccccCCCceeEE------eecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEE
Q 014151 174 DPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAW------ELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVT 247 (430)
Q Consensus 174 d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~w------el~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 247 (430)
+|+-++..+.+++++..- .+-|+ |=| .|-+| .-.|.++. ...+.+|+.++++++|...|.-.|.
T Consensus 121 ~~eWkdii~~~l~rL~d~--GfdGv-yLD--~VD~y~Y~~~~~~~~~~~~-----~k~m~~~i~~i~~~~ra~~~~~~Vi 190 (300)
T COG2342 121 EPEWKDIIRSYLDRLIDQ--GFDGV-YLD--VVDAYWYVEWNDRETGVNA-----AKKMVKFIAAIAEYARAANPLFRVI 190 (300)
T ss_pred CHHHHHHHHHHHHHHHHc--cCceE-EEe--eechHHHHHHhcccccccH-----HHHHHHHHHHHHHHHHhcCCcEEEE
Q ss_pred EccCCccCCCCCCCcccCccchhhccCcchhhccCCCCcceEEeeecCCCCCCCcchhhhHHHHHHHHHHHHHhhhhcCC
Q 014151 248 VGLEGFYGPKSPKRLTVNPEMWASALGSDFIRNSNNDNIDFASVHIYPDHWFHDLEFEDDLKFVTKWMLSHIEDGDKELN 327 (430)
Q Consensus 248 ~G~~g~~~~~~~~~~~~np~~w~~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~a~~~~g 327 (430)
. +.+.+.. ++...-..++.++... ..+|.....-.....-... +.++...+ .|
T Consensus 191 ~----------------qng~~l~----d~~~a~l~~~~~~~~~---vE~~~~d~~~~~~~~~~~e---~~Lr~l~~-~G 243 (300)
T COG2342 191 P----------------QNGAELF----DADGAGLLPRLGFGVA---VETVFYDDERPLESADTFE---EYLRKLCR-LG 243 (300)
T ss_pred e----------------cccHhhc----CccccchhhccccceE---EEEEEecCccCCCchhhHH---HHHHHHHh-cC
Q ss_pred CcEEEEecCCCCCC
Q 014151 328 KPVFFTEYGLSNLI 341 (430)
Q Consensus 328 kPv~v~EfG~~~~~ 341 (430)
|||++-|++.....
T Consensus 244 ~~V~vieY~~d~~~ 257 (300)
T COG2342 244 KPVYVIEYALDPTD 257 (300)
T ss_pred CcEEEEEecCCCCc
No 180
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=50.56 E-value=55 Score=31.59 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSL 140 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l 140 (430)
.+..+.+++...+.|+..||++... ..++.+...++.|+++|+++.+.+
T Consensus 90 ~~~~~~di~~~~~~g~~~iri~~~~----------------~~~~~~~~~i~~ak~~G~~v~~~i 138 (275)
T cd07937 90 DDVVELFVEKAAKNGIDIFRIFDAL----------------NDVRNLEVAIKAVKKAGKHVEGAI 138 (275)
T ss_pred cHHHHHHHHHHHHcCCCEEEEeecC----------------ChHHHHHHHHHHHHHCCCeEEEEE
Confidence 4567889999999999999994421 116778899999999999988754
No 181
>PF02472 ExbD: Biopolymer transport protein ExbD/TolR; InterPro: IPR003400 This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria []. The family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2JWL_A 2JWK_A 2PFU_A.
Probab=49.72 E-value=32 Score=28.65 Aligned_cols=55 Identities=18% Similarity=0.220 Sum_probs=31.0
Q ss_pred EEEe-CCeEEECCeEEEEEeeeccc------------cccccCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014151 42 VTRN-GTHFMLDGKALYVNGWNSYW------------LMDHAVHDYSRARVGAMLQAGAKMGLTVCRT 96 (430)
Q Consensus 42 v~~~-g~~f~~~G~~~~~~G~N~~~------------~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~ 96 (430)
|.++ .+++.+||+++-+......- ...........+.+.+.++.+++.|+..|++
T Consensus 58 i~i~~~g~i~~~~~~v~~~~L~~~l~~~~~~~~~~~~v~i~aD~~~~y~~vv~vl~~l~~~g~~~v~l 125 (130)
T PF02472_consen 58 ISIDADGSIFLNGKPVDLEELEARLKELKQKNPDPVRVLIRADKDAPYQDVVDVLDALREAGFTKVSL 125 (130)
T ss_dssp EEEETTCEEEETTEEE-CCCHHHHHHHHCCC-TTS--EEEEE-TTS-HHHHHHHHHHHHHTT---EE-
T ss_pred EEECCCCcEEECCCcCchHHHHHHHHHhhccCCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 5555 46788899997554432110 0001112346789999999999999999887
No 182
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=49.61 E-value=2.4e+02 Score=26.81 Aligned_cols=74 Identities=14% Similarity=0.099 Sum_probs=44.3
Q ss_pred CCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHH
Q 014151 52 DGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARK 131 (430)
Q Consensus 52 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~ 131 (430)
.+.++.+..=|.++....+ ++-+. -.+.++++|++.+=+ .+++- ...|.|+ -+.+.+-+..|.+
T Consensus 52 ~~~~i~vgAQnv~~~~~Ga---~TGev---S~~mL~d~G~~~vii-GHSER--------R~~f~Et-~~~i~~Kv~~a~~ 115 (242)
T cd00311 52 EGSKIKVGAQNVSPEDSGA---FTGEI---SAEMLKDAGAKYVII-GHSER--------RQYFGET-DEDVAKKVKAALE 115 (242)
T ss_pred cCCCeEEEecccccccCCC---CcCcC---CHHHHHHcCCCEEEe-Ccccc--------cCcCCCC-cHHHHHHHHHHHH
Confidence 4445656555666543221 11111 123578999998887 44431 1123332 4567788999999
Q ss_pred cCCEEEEecc
Q 014151 132 NGVRLLLSLV 141 (430)
Q Consensus 132 ~Gi~vil~l~ 141 (430)
+||.+|++.-
T Consensus 116 ~gl~pIvCiG 125 (242)
T cd00311 116 AGLTPILCVG 125 (242)
T ss_pred CCCEEEEEeC
Confidence 9999999873
No 183
>PRK14567 triosephosphate isomerase; Provisional
Probab=49.55 E-value=1.6e+02 Score=28.14 Aligned_cols=47 Identities=6% Similarity=0.027 Sum_probs=31.8
Q ss_pred HHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 85 AGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 85 ~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
.++++|++.+=+ .+++- ...|.|. -+.+.+-+..|.++||.+|++.-
T Consensus 80 mLkd~G~~yvii-GHSER--------R~~f~Et-d~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 80 MLEDIGCDYLLI-GHSER--------RSLFAES-DEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHcCCCEEEE-Ccccc--------cCccCCC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 478999998887 44431 1123332 23456778889999999999873
No 184
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=49.51 E-value=2.4e+02 Score=26.77 Aligned_cols=105 Identities=12% Similarity=0.107 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhh
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYV 154 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~ 154 (430)
+....++.-+.+++.|+.+.-+..-....++...+.+ ..-+..++.+.++++.|++.|...|.. +. +.
T Consensus 50 ~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~-~~r~~~~~~~~~~i~~a~~lG~~~v~~-~~------~~---- 117 (284)
T PRK13210 50 SKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDP-ATRERALEIMKKAIRLAQDLGIRTIQL-AG------YD---- 117 (284)
T ss_pred CHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCH-HHHHHHHHHHHHHHHHHHHhCCCEEEE-CC------cc----
Confidence 4566777777888999887655211000011000111 112457889999999999999999863 11 00
Q ss_pred hhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeec
Q 014151 155 NWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELI 212 (430)
Q Consensus 155 ~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~ 212 (430)
.+. . ..+++..+.+.+.++.++.+ -++.--.+++|..
T Consensus 118 ~~~--------~-----~~~~~~~~~~~~~l~~l~~~--------a~~~gv~l~lE~~ 154 (284)
T PRK13210 118 VYY--------E-----EKSEETRQRFIEGLAWAVEQ--------AAAAQVMLAVEIM 154 (284)
T ss_pred ccc--------c-----cccHHHHHHHHHHHHHHHHH--------HHHhCCEEEEEec
Confidence 000 0 01345666677777777776 5555555666654
No 185
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=49.09 E-value=38 Score=32.25 Aligned_cols=51 Identities=16% Similarity=0.332 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSL 140 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l 140 (430)
+..+++.++.++++|+++|=+ ++|.- . .+ .+..-++|..|+++|++|+.-+
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---SdGti-~-------l~---~~~r~~~I~~~~~~Gf~v~~Ev 133 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---SDGTI-D-------LP---EEERLRLIRKAKEEGFKVLSEV 133 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----SSS--------------HHHHHHHHHHHCCTTSEEEEEE
T ss_pred cChHHHHHHHHHHcCCCEEEe---cCCce-e-------CC---HHHHHHHHHHHHHCCCEEeecc
Confidence 457899999999999999998 66521 1 11 2334577999999999998765
No 186
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=48.82 E-value=36 Score=31.71 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEE
Q 014151 77 ARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRL 136 (430)
Q Consensus 77 ~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~v 136 (430)
-.++..++.++++|.+.|.+|.. .| ...++.|..+.++|.++|+++
T Consensus 135 V~vetAiaml~dmG~~SiKffPM-~G-------------l~~leE~~avA~aca~~g~~l 180 (236)
T TIGR03581 135 VPIETAIAMLKDMGGSSVKFFPM-GG-------------LKHLEEYAAVAKACAKHGFYL 180 (236)
T ss_pred eeHHHHHHHHHHcCCCeeeEeec-CC-------------cccHHHHHHHHHHHHHcCCcc
Confidence 35788999999999999999654 11 234666777888888888864
No 187
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=48.70 E-value=57 Score=33.64 Aligned_cols=66 Identities=21% Similarity=0.377 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccC-CC----C---CccccCCCCCC---hHHHHHHHHHHHHH-HHcCCEEEEecc
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFND-GG----Y---NSLQISPGQFD---ERVFKALDHVIVEA-RKNGVRLLLSLV 141 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~-g~----~---~~~~~~pg~~d---e~~l~~lD~~l~~A-~~~Gi~vil~l~ 141 (430)
.+.|++.|+.++++|.|.|-+-.+.. |. | ..++-.|.-+. +..++.+.++|..+ +++||..+.++.
T Consensus 21 ~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV 98 (423)
T PF14701_consen 21 FSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVV 98 (423)
T ss_pred HhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEe
Confidence 46899999999999999999855432 21 1 11122222111 23467888888888 479999999875
No 188
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=48.41 E-value=72 Score=33.27 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSL 140 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l 140 (430)
.+.++++++.+.+.|++.+|++.... + .+.+...++.|+++|+.+.+.+
T Consensus 95 ddvv~~~v~~A~~~Gvd~irif~~ln--d--------------~~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 95 DDVVESFVQKSVENGIDIIRIFDALN--D--------------VRNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred hhhHHHHHHHHHHCCCCEEEEEEecC--c--------------HHHHHHHHHHHHHcCCeEEEEE
Confidence 56788999999999999999955321 0 1347789999999999887654
No 189
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=47.49 E-value=84 Score=31.35 Aligned_cols=116 Identities=12% Similarity=0.252 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhh
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYV 154 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~ 154 (430)
+.+++++..+.+++.++-.==+|. |..|..- -..-.+|++.|....++++..++.|+++++-++..-. +|.
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~l--Didy~~~-~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~-~g~----- 92 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHV--DVDFQDN-YRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS-YGG----- 92 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEE--cCchhcC-CCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee-cCc-----
Confidence 678899999999999976433332 2122110 0112445566666678899999999999886654321 111
Q ss_pred hhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCC
Q 014151 155 NWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCM 218 (430)
Q Consensus 155 ~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~ 218 (430)
.|. + + ..-.+ |++|++++.+.+..+.+.+- |+ -..|.=+|||...
T Consensus 93 ~~~---~-~--~~~pD-ftnp~ar~wW~~~~~~l~~~-----Gv-------~~~W~DmnEp~~~ 137 (332)
T cd06601 93 GLG---S-P--GLYPD-LGRPDVREWWGNQYKYLFDI-----GL-------EFVWQDMTTPAIM 137 (332)
T ss_pred cCC---C-C--ceeeC-CCCHHHHHHHHHHHHHHHhC-----CC-------ceeecCCCCcccc
Confidence 121 0 0 00112 67899998887777665432 21 1247779998743
No 190
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=47.43 E-value=1.1e+02 Score=30.44 Aligned_cols=64 Identities=13% Similarity=0.140 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
+.+.+.+.++.+++.|+.+==+|+ |..|..- -..-.+|++.+.....+++..+++|+++++-.+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~l--D~~~~~~-~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~ 85 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYL--DIDYMDG-YRVFTWDKERFPDPKELIKELHEQGFKVVTIID 85 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEE--CchhhCC-CCceeeccccCCCHHHHHHHHHHCCCEEEEEEe
Confidence 578899999999999987655543 2122110 011235566666678999999999999987554
No 191
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=46.82 E-value=80 Score=26.29 Aligned_cols=55 Identities=4% Similarity=-0.014 Sum_probs=31.6
Q ss_pred EEEe-CCeEEECCeEEEEEeeec----c----ccccccCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014151 42 VTRN-GTHFMLDGKALYVNGWNS----Y----WLMDHAVHDYSRARVGAMLQAGAKMGLTVCRT 96 (430)
Q Consensus 42 v~~~-g~~f~~~G~~~~~~G~N~----~----~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~ 96 (430)
|.++ ++++.+||+++.....-. . -....++.....+.+.+.++.+++.|+.-|-+
T Consensus 54 v~i~~~g~~~~~~~~v~~~~L~~~l~~~~~~~~v~i~aD~~~~~~~vv~v~d~~~~~G~~~v~l 117 (121)
T TIGR02804 54 ITITADNQLYFNDKPISLEELEAEIAQLNKDQKVTLKSDKEAKFQDFVTITDMLKAKEHENVQI 117 (121)
T ss_pred EEEECCCCEEECCcccCHHHHHHHHHhhCCCCeEEEEeCCCCCHhHHHHHHHHHHHcCCCeEEE
Confidence 4444 577888888753211100 0 00011122346788889999999999886654
No 192
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=46.58 E-value=96 Score=30.46 Aligned_cols=60 Identities=20% Similarity=0.195 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCC--CCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPG--QFDERVFKALDHVIVEARKNGVRLLLS 139 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg--~~de~~l~~lD~~l~~A~~~Gi~vil~ 139 (430)
+.+++++.++.+.+.|.+.|.++.-.. ..... ..++ .++ .+.+.+++++|+++|+.+.+-
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~-~~~~~-~~~~~~~~~---~e~l~~~~~~A~~~g~~v~~H 179 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGG-VLSPG-DPPPDTQFS---EEELRAIVDEAHKAGLYVAAH 179 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCC-cCCCC-CCCcccCcC---HHHHHHHHHHHHHcCCEEEEE
Confidence 578889999999999999999975211 01000 0111 234 356778999999999988653
No 193
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=45.71 E-value=1e+02 Score=29.87 Aligned_cols=110 Identities=12% Similarity=0.142 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCC--CCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCc-
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISP--GQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGK- 150 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~p--g~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~- 150 (430)
.+.+..++.++.++++|+.-|=+ . .+|......+ .......-..|.++++-|+++|+.|+|-.+. ...++.
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlv---D-~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~--~~~~~~~ 102 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLV---D-AGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHS--ETGGNVA 102 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEE---B-TTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEEC--CHTTBHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEe---c-cccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeC--CcchhhH
Confidence 47899999999999999998877 3 3464311110 0001111246889999999999999986653 221111
Q ss_pred ------chhhhhhhhhCCCCCCCCCCCCC--CHHHHHHHHHHHHHHHhc
Q 014151 151 ------TQYVNWAWEEGIGISSSNDSFFF--DPSIHKYFKHYVKTVLTR 191 (430)
Q Consensus 151 ------~~y~~W~~~~G~~~~~~~~~f~~--d~~~~~~~~~~~~~lv~R 191 (430)
+....+...-|.. +=..+|+. +....+.+.+.++..+++
T Consensus 103 ~~~~~~~~~f~~~~~~Gv~--GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 103 NLEKQLDEAFKLYAKWGVK--GVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp HHHCCHHHHHHHHHHCTEE--EEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHcCCC--EEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 1111122221221 11235553 477899999999998887
No 194
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=45.60 E-value=1.7e+02 Score=27.94 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=30.2
Q ss_pred HHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 84 QAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 84 ~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
+.++++|++.+=+ .+++- ...|.|. =+.+.+=+..|.++||.+|++.-
T Consensus 80 ~mLkd~G~~~vii-GHSER--------R~~f~Et-d~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 80 EMLKDLGVKYVII-GHSER--------RQYFGET-DELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred HHHHHCCCCEEEe-Ccccc--------cCccCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 3579999998887 44431 1223332 12333445559999999999873
No 195
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=45.40 E-value=3e+02 Score=26.74 Aligned_cols=131 Identities=16% Similarity=0.187 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcc-c
Q 014151 119 FKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTIT-G 197 (430)
Q Consensus 119 l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~t-g 197 (430)
-..|..-|..|++.|+||+|++- |-. .... +.+++.++.|.+.+-.+....+.-+ -
T Consensus 58 c~~~~~dI~~cq~~G~KVlLSIG-------G~~---------------~~~~-~~s~~~a~~Fa~~l~~~~~~~~~~~~~ 114 (280)
T cd02877 58 CPQLGADIKHCQSKGKKVLLSIG-------GAG---------------GSYS-LSSDADAKDFADYLWNAFGGGTDSGVP 114 (280)
T ss_pred chhHHHHHHHHHHCCCEEEEEcc-------CCC---------------CCcC-CCCHHHHHHHHHHHHHHhCCccccccc
Confidence 34677889999999999999873 210 0011 2566666666666554432200000 0
Q ss_pred ccccCCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcC-CCCEEEEccCCccCCCCCCCcccCccchhhccCcc
Q 014151 198 VEYRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSID-KKHLVTVGLEGFYGPKSPKRLTVNPEMWASALGSD 276 (430)
Q Consensus 198 ~~yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~d-p~~lV~~G~~g~~~~~~~~~~~~np~~w~~~~g~d 276 (430)
+++++. .+-++|+-=|-... ..+.+.++++.+..++.. .+-+||.... +.. |.. .
T Consensus 115 rp~g~~-~lDGiD~D~E~~~~-----~~~~~l~~~LR~~~~~~~~~~~~LTaAPq----~~~-------~d~-------~ 170 (280)
T cd02877 115 RPFGDA-VVDGFDFDIEHGSP-----ENYDALAKRLRSLFASDPSKKYYLTAAPQ----CPY-------PDA-------S 170 (280)
T ss_pred cccccc-cccceEEecccCCc-----cCHHHHHHHHHHHhhcccCCceEEEeccc----cCC-------cch-------h
Confidence 123222 46677776553321 234555555555444322 2344444321 111 100 0
Q ss_pred hhhccCCCCcceEEeeecCC
Q 014151 277 FIRNSNNDNIDFASVHIYPD 296 (430)
Q Consensus 277 f~~~~~~~~iD~~s~H~Y~~ 296 (430)
....+....+|++-+.+|-.
T Consensus 171 ~~~~i~~~~~D~i~vqfYn~ 190 (280)
T cd02877 171 LGDAIATGLFDFIFVQFYNN 190 (280)
T ss_pred HHHHHccCccCEEEEEEecC
Confidence 11122335799999999975
No 196
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=45.01 E-value=2.3e+02 Score=28.54 Aligned_cols=79 Identities=15% Similarity=0.178 Sum_probs=53.6
Q ss_pred EEE-CCeE-EEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHH
Q 014151 49 FML-DGKA-LYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVI 126 (430)
Q Consensus 49 f~~-~G~~-~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l 126 (430)
..+ ++++ +.++|-+. -.+++++.+.-+.+++.|++.+|--.|.. .++|..|..-.-+.|+.+-
T Consensus 94 v~iGg~~~l~vIAGPCs---------IEs~eq~l~~A~~lk~~g~~~~r~g~~kp------Rtsp~sf~G~g~~gl~~L~ 158 (352)
T PRK13396 94 VPFGENHPVVVVAGPCS---------VENEEMIVETAKRVKAAGAKFLRGGAYKP------RTSPYAFQGHGESALELLA 158 (352)
T ss_pred eEecCCCeEEEEEeCCc---------ccCHHHHHHHHHHHHHcCCCEEEeeeecC------CCCCcccCCchHHHHHHHH
Confidence 444 4454 56777432 12578888888999999999999633321 2345445444456677777
Q ss_pred HHHHHcCCEEEEeccC
Q 014151 127 VEARKNGVRLLLSLVN 142 (430)
Q Consensus 127 ~~A~~~Gi~vil~l~~ 142 (430)
+.+++.||.++-+.++
T Consensus 159 ~~~~e~Gl~~~tev~d 174 (352)
T PRK13396 159 AAREATGLGIITEVMD 174 (352)
T ss_pred HHHHHcCCcEEEeeCC
Confidence 8899999999988765
No 197
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=44.38 E-value=2.8e+02 Score=26.09 Aligned_cols=92 Identities=15% Similarity=0.118 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCc
Q 014151 116 ERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTI 195 (430)
Q Consensus 116 e~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~ 195 (430)
+...+.++++++.|++.|...|.... |..+ . . +...+..+.+.+.++.++..
T Consensus 81 ~~~~~~~~~~i~~a~~lga~~i~~~~------g~~~--------------~---~-~~~~~~~~~~~~~l~~l~~~---- 132 (258)
T PRK09997 81 EEFRDGVAAAIRYARALGNKKINCLV------GKTP--------------A---G-FSSEQIHATLVENLRYAANM---- 132 (258)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECC------CCCC--------------C---C-CCHHHHHHHHHHHHHHHHHH----
Confidence 45578899999999999999875432 1110 0 0 22345567777888888777
Q ss_pred ccccccCCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCC
Q 014151 196 TGVEYRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKH 244 (430)
Q Consensus 196 tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~ 244 (430)
.++..-.+++|..|-+..... +..-..++.+.|+++++..
T Consensus 133 ----a~~~Gv~l~lE~~n~~~~~~~-----~~~~~~~~~~ll~~v~~~~ 172 (258)
T PRK09997 133 ----LMKEDILLLIEPINHFDIPGF-----HLTGTRQALKLIDDVGCCN 172 (258)
T ss_pred ----HHHcCCEEEEEeCCCcCCCCC-----ccCCHHHHHHHHHHhCCCC
Confidence 666677788998886432110 0011244555677777654
No 198
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=43.90 E-value=2.4e+02 Score=25.26 Aligned_cols=93 Identities=17% Similarity=0.276 Sum_probs=54.0
Q ss_pred HHHHHHHHc--CCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCccccccc
Q 014151 124 HVIVEARKN--GVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYR 201 (430)
Q Consensus 124 ~~l~~A~~~--Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk 201 (430)
..+..++++ |++|++.+-. |... . ......+++.++.|.+-+..++++ |+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg-~~~~------------------~-~~~~~~~~~~~~~f~~~~~~~v~~--------~~ 104 (210)
T cd00598 53 GALEELASKKPGLKVLISIGG-WTDS------------------S-PFTLASDPASRAAFANSLVSFLKT--------YG 104 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcC-CCCC------------------C-CchhhcCHHHHHHHHHHHHHHHHH--------cC
Confidence 344455554 9999998743 2100 0 002346788888888888888887 66
Q ss_pred CCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEc
Q 014151 202 NDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVG 249 (430)
Q Consensus 202 ~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G 249 (430)
=|---+-||-...... ...+.+..+++++.+.+++. +-++++.
T Consensus 105 ~DGidiD~E~~~~~~~---~~~~~~~~ll~~lr~~l~~~--~~~ls~a 147 (210)
T cd00598 105 FDGVDIDWEYPGAADN---SDRENFITLLRELRSALGAA--NYLLTIA 147 (210)
T ss_pred CCceEEeeeCCCCcCc---cHHHHHHHHHHHHHHHhccc--CcEEEEE
Confidence 5555555554322110 12456777777777766543 4566654
No 199
>PLN02692 alpha-galactosidase
Probab=43.66 E-value=72 Score=32.82 Aligned_cols=80 Identities=18% Similarity=0.292 Sum_probs=48.8
Q ss_pred CCe-EEEEEeeeccccccccCCCCCHHHHHHHHHHH-----HHcCCCEEEEccccCCCCCcccc-CCCC--CChHHH-HH
Q 014151 52 DGK-ALYVNGWNSYWLMDHAVHDYSRARVGAMLQAG-----AKMGLTVCRTWAFNDGGYNSLQI-SPGQ--FDERVF-KA 121 (430)
Q Consensus 52 ~G~-~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~-----~~~G~n~vR~~~~~~g~~~~~~~-~pg~--~de~~l-~~ 121 (430)
||- +..+.|.|.|...... .+++.+.+..+.| +++|.+.|=+ .+ .|..... +.|. .|++.| ..
T Consensus 50 ngla~tPpmGWnSW~~~~~~---i~E~~i~~~ad~~~~~gl~~~Gy~yv~i---DD-gW~~~~rd~~G~~~~d~~kFP~G 122 (412)
T PLN02692 50 NGLGITPPMGWNSWNHFSCK---IDEKMIKETADALVSTGLSKLGYTYVNI---DD-CWAEIARDEKGNLVPKKSTFPSG 122 (412)
T ss_pred CcCcCCCcceEEchhhhCcc---cCHHHHHHHHHHHHhccchhcCcEEEEE---cC-CcCCCCCCCCCCeeeChhhcCCc
Confidence 663 4457899976543332 3677788877766 5557776655 33 3632111 1232 233334 45
Q ss_pred HHHHHHHHHHcCCEEEE
Q 014151 122 LDHVIVEARKNGVRLLL 138 (430)
Q Consensus 122 lD~~l~~A~~~Gi~vil 138 (430)
|..+.+..+++|||.=|
T Consensus 123 ~k~ladyiH~~GLKfGI 139 (412)
T PLN02692 123 IKALADYVHSKGLKLGI 139 (412)
T ss_pred HHHHHHHHHHCCCceEE
Confidence 88999999999999855
No 200
>PRK01060 endonuclease IV; Provisional
Probab=43.56 E-value=1.8e+02 Score=27.72 Aligned_cols=50 Identities=12% Similarity=0.206 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEE
Q 014151 79 VGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRL 136 (430)
Q Consensus 79 ~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~v 136 (430)
+++.++.++++|++.|=+|+.+...| .+..++++. ++++-++++++||.+
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~-----~~~~~~~~~---~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQW-----KRKPLEELN---IEAFKAACEKYGISP 63 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCC-----cCCCCCHHH---HHHHHHHHHHcCCCC
Confidence 88999999999999999876422112 122344433 556667788999985
No 201
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=42.83 E-value=1.7e+02 Score=28.86 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCcccc---C--CCCCChHHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQI---S--PGQFDERVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~---~--pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
+.+++.+.++.+++.|+.+==++. |..|..... . .-.+|++.|....++++..+++|++|++-++.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~l--D~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P 92 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAIL--DLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEP 92 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEE--echhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcC
Confidence 578899999999999987544432 112321110 0 12356666777789999999999999997653
No 202
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=42.69 E-value=1e+02 Score=32.63 Aligned_cols=64 Identities=19% Similarity=0.283 Sum_probs=45.0
Q ss_pred EEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCE
Q 014151 56 LYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVR 135 (430)
Q Consensus 56 ~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~ 135 (430)
..++|.|..- ...+..+.++.+++.+.+.|++++|++...+ .++.+...++.+++.|..
T Consensus 81 mL~Rg~N~vG-----y~~y~ddvv~~fv~~a~~~Gidi~RIfd~ln----------------dv~nl~~ai~~vk~ag~~ 139 (499)
T PRK12330 81 MLLRGQNLLG-----YRHYEDEVVDRFVEKSAENGMDVFRVFDALN----------------DPRNLEHAMKAVKKVGKH 139 (499)
T ss_pred EEEcccccCC-----ccCcchhHHHHHHHHHHHcCCCEEEEEecCC----------------hHHHHHHHHHHHHHhCCe
Confidence 3456777421 1123467899999999999999999954211 146778889999999988
Q ss_pred EEEec
Q 014151 136 LLLSL 140 (430)
Q Consensus 136 vil~l 140 (430)
+...+
T Consensus 140 ~~~~i 144 (499)
T PRK12330 140 AQGTI 144 (499)
T ss_pred EEEEE
Confidence 75543
No 203
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=41.61 E-value=2.8e+02 Score=28.45 Aligned_cols=128 Identities=18% Similarity=0.279 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCC-cchh
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGG-KTQY 153 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg-~~~y 153 (430)
+.+.+.+.++.+++.|+-+==++. .+ .|.. ....-.+|++.|.....+++..+++|+++++.++..-..... ...|
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~i-D~-~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~ 117 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWI-DD-DYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENY 117 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE--G-GGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHH
T ss_pred CHHHHHHHHHHHHHcCCCccceec-cc-cccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhh
Confidence 578899999999999988666543 21 1211 011225677777788999999999999999976543211111 0122
Q ss_pred hhhhhhhCCCCC-CC-------------CCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCC
Q 014151 154 VNWAWEEGIGIS-SS-------------NDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRC 217 (430)
Q Consensus 154 ~~W~~~~G~~~~-~~-------------~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~ 217 (430)
.... ..|.-+. .. ..--+++|++++.+.+.++.++.. ++- =.-|.=+|||..
T Consensus 118 ~~~~-~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~--------~Gv---dg~w~D~~E~~~ 183 (441)
T PF01055_consen 118 DEAK-EKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDD--------YGV---DGWWLDFGEPSS 183 (441)
T ss_dssp HHHH-HTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTT--------ST----SEEEEESTTTBS
T ss_pred hhHh-hcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhc--------cCC---ceEEeecCCccc
Confidence 2111 1111000 00 001168899999999999887765 322 223666889986
No 204
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=41.57 E-value=2.5e+02 Score=27.56 Aligned_cols=103 Identities=15% Similarity=0.206 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHH-cCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccc
Q 014151 120 KALDHVIVEARK-NGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGV 198 (430)
Q Consensus 120 ~~lD~~l~~A~~-~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~ 198 (430)
..+.++....++ .+++|++.+-. |..... -...-.+++.++.|.+-+..++++
T Consensus 70 ~~~~~~~~lk~~~p~lkvl~siGG-~~~s~~------------------f~~~~~~~~~r~~Fi~siv~~l~~------- 123 (322)
T cd06548 70 GNFGQLRKLKQKNPHLKILLSIGG-WTWSGG------------------FSDAAATEASRAKFADSAVDFIRK------- 123 (322)
T ss_pred hHHHHHHHHHHhCCCCEEEEEEeC-CCCCCC------------------chhHhCCHHHHHHHHHHHHHHHHh-------
Confidence 345555555544 46999998743 421100 011235788899998888888888
Q ss_pred cccCCCceeEEeecCCCC----CCCCCChHHHHHHHHHHHHHHHhcC----CCCEEEEc
Q 014151 199 EYRNDPTIFAWELINEPR----CMSDPSGDTLQDWIDEMSAFVKSID----KKHLVTVG 249 (430)
Q Consensus 199 ~yk~~p~I~~wel~NEp~----~~~~~~~~~~~~w~~~~~~~Ir~~d----p~~lV~~G 249 (430)
|.=|---+-||--.-.. .....+.+.+..+++++.+.+++.. ++.++++.
T Consensus 124 -~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~~~Ls~a 181 (322)
T cd06548 124 -YGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLLLKELREALDALGAETGRKYLLTIA 181 (322)
T ss_pred -cCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhccCCceEEEEE
Confidence 65454444565321110 0011235678888999998887753 45666664
No 205
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=40.78 E-value=1e+02 Score=33.42 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEE
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLL 137 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vi 137 (430)
.+.++.+++.+++.|+..+|++.... .++.+...++.|+++|..+.
T Consensus 96 ddvv~~~v~~a~~~Gid~~rifd~ln----------------d~~~~~~ai~~ak~~G~~~~ 141 (593)
T PRK14040 96 DDVVERFVERAVKNGMDVFRVFDAMN----------------DPRNLETALKAVRKVGAHAQ 141 (593)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeeeCC----------------cHHHHHHHHHHHHHcCCeEE
Confidence 56789999999999999999953211 03566777888888888753
No 206
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=40.52 E-value=46 Score=36.42 Aligned_cols=65 Identities=20% Similarity=0.378 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEcc-ccCC------CCCcc-ccCC-CCCC----hHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 77 ARVGAMLQAGAKMGLTVCRTWA-FNDG------GYNSL-QISP-GQFD----ERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 77 ~~~~~~~~~~~~~G~n~vR~~~-~~~g------~~~~~-~~~p-g~~d----e~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
+..++++..+|++|.|+|-+-+ |..+ +|... .-+| ++|. +.-...|.++|++|...||-|+|+..
T Consensus 255 ~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV 332 (757)
T KOG0470|consen 255 GFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVV 332 (757)
T ss_pred hhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhh
Confidence 4566779999999999999833 2111 12111 0011 1221 12266789999999999999999864
No 207
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=40.08 E-value=2e+02 Score=28.70 Aligned_cols=90 Identities=17% Similarity=0.163 Sum_probs=56.5
Q ss_pred EeCCeEEECCeEEEEE--eeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEcccc-CC-----CCCccccCCCCC-
Q 014151 44 RNGTHFMLDGKALYVN--GWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFN-DG-----GYNSLQISPGQF- 114 (430)
Q Consensus 44 ~~g~~f~~~G~~~~~~--G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~-~g-----~~~~~~~~pg~~- 114 (430)
+-|..|--+.+||.+. |.| +.+ +-++..+.++.+++.|..+|-+-.|- .. ..+..-+-++.+
T Consensus 4 Ig~r~i~~~~~~~iIAEig~N-----HnG----~le~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~ 74 (347)
T COG2089 4 IGNRTIGKDKKPFIIAEIGAN-----HNG----DLERAKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWD 74 (347)
T ss_pred eCceeecCCCCcEEEeeeccc-----ccC----cHHHHHHHHHHHHHcCcceeeeecccccccccccccCCccccccccc
Confidence 3344455577788775 666 233 57889999999999999999984421 10 000000000111
Q ss_pred ----------ChHHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 115 ----------DERVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 115 ----------de~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
-+.-+++.-++.+.|++.||-.+-+.++
T Consensus 75 ~~slyel~e~~~~p~e~~~~Lke~a~~~Gi~~~SSPfd 112 (347)
T COG2089 75 KVSLYELYEEAETPLEWHAQLKEYARKRGIIFFSSPFD 112 (347)
T ss_pred cccHHHHHHHhcCCHHHHHHHHHHHHHcCeEEEecCCC
Confidence 1234567778999999999988776554
No 208
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=39.25 E-value=44 Score=33.05 Aligned_cols=92 Identities=18% Similarity=0.236 Sum_probs=51.0
Q ss_pred HHHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHhccCCcccccccCC
Q 014151 125 VIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFF-DPSIHKYFKHYVKTVLTRKNTITGVEYRND 203 (430)
Q Consensus 125 ~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~-d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~ 203 (430)
.+++|+++|++|+=++.-.|. ++ ..|... +.. +++-...+.+-+-+|+.. |+=|
T Consensus 47 widaAHrnGV~vLGTiife~~--~~----~~~~~~-----------ll~~~~~g~~~~A~kLi~ia~~--------yGFD 101 (311)
T PF03644_consen 47 WIDAAHRNGVKVLGTIIFEWG--GG----AEWCEE-----------LLEKDEDGSFPYADKLIEIAKY--------YGFD 101 (311)
T ss_dssp HHHHHHHTT--EEEEEEEEEE--------HHHHHH-----------HT---TTS--HHHHHHHHHHHH--------HT--
T ss_pred hHHHHHhcCceEEEEEEecCC--ch----HHHHHH-----------HHcCCcccccHHHHHHHHHHHH--------cCCC
Confidence 589999999999888765553 22 233322 111 222233445666677777 8766
Q ss_pred CceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEE
Q 014151 204 PTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLV 246 (430)
Q Consensus 204 p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV 246 (430)
--.+=+|....+. ...+.+..|++++.+..++ .|+..|
T Consensus 102 Gw~iN~E~~~~~~----~~~~~l~~F~~~l~~~~~~-~~~~~v 139 (311)
T PF03644_consen 102 GWLINIETPLSGP----EDAENLIDFLKYLRKEAHE-NPGSEV 139 (311)
T ss_dssp EEEEEEEESSTTG----GGHHHHHHHHHHHHHHHHH-T-T-EE
T ss_pred ceEEEecccCCch----hHHHHHHHHHHHHHHHhhc-CCCcEE
Confidence 4444444333221 1357899999999999999 877554
No 209
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=38.48 E-value=62 Score=33.19 Aligned_cols=90 Identities=14% Similarity=0.218 Sum_probs=63.5
Q ss_pred HHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCc
Q 014151 126 IVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPT 205 (430)
Q Consensus 126 l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~ 205 (430)
...|.+||++|+=++...|.. |+. .-..|..+.+..+.+.+.+.++++. ++=+
T Consensus 117 tn~AHrHGV~vlGTFItEw~e-g~~----------------~c~~~La~~es~~~~~e~L~~l~~~--------fgFd-- 169 (526)
T KOG2331|consen 117 TNTAHRHGVKVLGTFITEWDE-GKA----------------TCKEFLATEESVEMTVERLVELARF--------FGFD-- 169 (526)
T ss_pred cchhhhcCceeeeeEEEEecc-chh----------------HHHHHHccchhHHHHHHHHHHHHHH--------hCCc--
Confidence 357999999999999888852 211 1123455666688888888899888 7655
Q ss_pred eeEEee--cCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEE
Q 014151 206 IFAWEL--INEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVT 247 (430)
Q Consensus 206 I~~wel--~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 247 (430)
+|-+ .|-.... .-+.+..++..+.+..++.-|+-+|.
T Consensus 170 --GWLiNiEn~i~~~---~i~~l~~F~~~Lt~~~~~~~p~~~Vi 208 (526)
T KOG2331|consen 170 --GWLINIENKIDLA---KIPNLIQFVSHLTKVLHSSVPGGLVI 208 (526)
T ss_pred --eEEEEeeeccChh---hCccHHHHHHHHHHHHhhcCCCceEE
Confidence 4544 3433322 23568899999999999999998875
No 210
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=38.45 E-value=2.9e+02 Score=31.39 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 116 ERVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 116 e~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
+..++.|..+|+.|+++||+||-.++.
T Consensus 804 ~~~~~~l~~~i~~~~~~~~~~ig~~~p 830 (912)
T TIGR02171 804 NENMNSLKAFIDETAKKGVKVIGTIFP 830 (912)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 355889999999999999999987764
No 211
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=37.04 E-value=58 Score=31.31 Aligned_cols=60 Identities=12% Similarity=0.013 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCCEEEEccc-cCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 80 GAMLQAGAKMGLTVCRTWAF-NDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 80 ~~~~~~~~~~G~n~vR~~~~-~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
.++++.+.+.|++.||++.- ++. -.+..-+.=-++.++.+.+++..|+++|++|.+++.+
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~---~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ed 134 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPF---LREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSED 134 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 35788888999999998542 110 0011111112677899999999999999999887643
No 212
>PF15281 Consortin_C: Consortin C-terminus
Probab=36.99 E-value=27 Score=28.68 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=19.4
Q ss_pred hhhhhHHHHHHHHHHhhCCccccC
Q 014151 10 FPIIGFASCVAFIYMSFGGLNVSY 33 (430)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~ 33 (430)
..++-+++||+.++||+||-..=|
T Consensus 53 Scl~L~LlclvTv~lS~gGTALYC 76 (113)
T PF15281_consen 53 SCLLLLLLCLVTVVLSVGGTALYC 76 (113)
T ss_pred ccHHHHHHHHHHHHHhccceEEEE
Confidence 456778899999999999965555
No 213
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=36.82 E-value=1.2e+02 Score=25.39 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEE
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRT 96 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~ 96 (430)
.+.+.+.+.++.+++.|++-|.+
T Consensus 104 ~~~~~vv~vmd~~~~~G~~~v~l 126 (129)
T TIGR02801 104 VPYGEVIKVMALLKQAGIEKVGL 126 (129)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEE
Confidence 45677778888888888776554
No 214
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=36.79 E-value=54 Score=31.24 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014151 80 GAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSL 140 (430)
Q Consensus 80 ~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l 140 (430)
.++++.+.+.|++.||+..... ....+..-+.-.++.++.+..+++.|+++|++|.+.+
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s--~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVS--DIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 4567788899999999854211 0000111111236778899999999999999987655
No 215
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=35.98 E-value=1.3e+02 Score=32.50 Aligned_cols=50 Identities=16% Similarity=0.292 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSL 140 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l 140 (430)
..+.++.+++.+.+.|++.+|++...+ .++.+...++.|+++|+.+..++
T Consensus 94 pd~vv~~~v~~A~~~Gvd~irif~~ln----------------d~~n~~~~i~~ak~~G~~v~~~i 143 (592)
T PRK09282 94 PDDVVEKFVEKAAENGIDIFRIFDALN----------------DVRNMEVAIKAAKKAGAHVQGTI 143 (592)
T ss_pred cchhhHHHHHHHHHCCCCEEEEEEecC----------------hHHHHHHHHHHHHHcCCEEEEEE
Confidence 356788999999999999999954321 13567788899999999887655
No 216
>PRK05434 phosphoglyceromutase; Provisional
Probab=35.89 E-value=2.7e+02 Score=29.63 Aligned_cols=78 Identities=26% Similarity=0.315 Sum_probs=53.5
Q ss_pred CCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHH
Q 014151 52 DGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARK 131 (430)
Q Consensus 52 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~ 131 (430)
+|+.+-+.|.=. ..+.. .-.+.+...++.+++.|++-|++++|.||... .| ..++..++++.+.+++
T Consensus 108 ~~~~lHl~GL~S----dggVH-sh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~----~p----~s~~~~i~~l~~~~~~ 174 (507)
T PRK05434 108 NGGALHLMGLLS----DGGVH-SHIDHLFALLELAKEEGVKKVYVHAFLDGRDT----PP----KSALGYLEELEAKLAE 174 (507)
T ss_pred cCCeEEEEEecc----CCCcc-cHHHHHHHHHHHHHHcCCCEEEEEEecCCCCC----Cc----hhHHHHHHHHHHHHHH
Confidence 355666666531 11110 12467888899999999999999999987431 12 4667888888888888
Q ss_pred cCCEEEEeccC
Q 014151 132 NGVRLLLSLVN 142 (430)
Q Consensus 132 ~Gi~vil~l~~ 142 (430)
.|.--|-++..
T Consensus 175 ~~~~~iasv~G 185 (507)
T PRK05434 175 LGVGRIASVSG 185 (507)
T ss_pred hCCeeEEEEec
Confidence 88866666643
No 217
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=35.74 E-value=62 Score=31.55 Aligned_cols=60 Identities=17% Similarity=0.047 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 80 GAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 80 ~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
.++++.+.+.|++.||++.... .. ..+..-+.--++.++.+..+++.|+++|++|...+.
T Consensus 82 ~~~ie~A~~~g~~~v~i~~~~s-~~-~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~ 141 (287)
T PRK05692 82 LKGLEAALAAGADEVAVFASAS-EA-FSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVS 141 (287)
T ss_pred HHHHHHHHHcCCCEEEEEEecC-HH-HHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 5677888899999999864321 00 001111222367889999999999999999987654
No 218
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=35.67 E-value=3.2e+02 Score=27.19 Aligned_cols=109 Identities=17% Similarity=0.282 Sum_probs=65.1
Q ss_pred HHHHHHHHHHcCC--EEEEeccCCcccCCCcchhhh-----hhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCC
Q 014151 122 LDHVIVEARKNGV--RLLLSLVNNLQAYGGKTQYVN-----WAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNT 194 (430)
Q Consensus 122 lD~~l~~A~~~Gi--~vil~l~~~w~~~gg~~~y~~-----W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~ 194 (430)
+..+++..++.|+ -|+++|...++.+. ...+.+ +....+...-..-..||++|.+.+++.+.|+.-.+.
T Consensus 104 i~~~v~~l~~~gv~~iv~~pLyPqyS~sT-t~s~~~~~~~al~~~~~~~~i~~I~~~~~~p~yI~a~a~~I~~~~~~--- 179 (320)
T COG0276 104 IEEAVEELKKDGVERIVVLPLYPQYSSST-TGSYVDELARALKELRGQPKISTIPDYYDEPLYIEALADSIREKLAK--- 179 (320)
T ss_pred HHHHHHHHHHcCCCeEEEEECCccccccc-HHHHHHHHHHHHHhcCCCCceEEecCccCChHHHHHHHHHHHHHHHh---
Confidence 3477899999999 66667766543321 111222 111111110023467899999999999998887666
Q ss_pred cccccccCCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhc
Q 014151 195 ITGVEYRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSI 240 (430)
Q Consensus 195 ~tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~ 240 (430)
..-++.++.+..--=|....+ .++....++++.+..|++.
T Consensus 180 -----~~~~~~~llfSaHglP~~~~~-~GDpY~~q~~~t~~li~e~ 219 (320)
T COG0276 180 -----HPRDDDVLLFSAHGLPKRYID-EGDPYPQQCQETTRLIAEA 219 (320)
T ss_pred -----cCCCCeEEEEecCCCchhhhh-cCCchHHHHHHHHHHHHHH
Confidence 432445555555444443222 2456788889999888863
No 219
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=35.35 E-value=79 Score=30.95 Aligned_cols=66 Identities=17% Similarity=0.132 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
.+++.+.+.++.+++.|+.+=-+++ .+ .|..-. ..-.+|++.|....++++..+++|+++++-+..
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~i-D~-~w~~~~-g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P 92 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEI-DD-NWETCY-GDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHP 92 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEe-CC-CccccC-CccccChhhCCCHHHHHHHHHHCCCeEEEEECC
Confidence 4688999999999999976433322 32 242111 112466777777899999999999999996654
No 220
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=34.98 E-value=86 Score=31.94 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHc--CCEEEEec
Q 014151 77 ARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKN--GVRLLLSL 140 (430)
Q Consensus 77 ~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~--Gi~vil~l 140 (430)
+..++-++.++++|.++|-+|.-..+.....+.....--+...+.|.++.+.|+++ ||++.|--
T Consensus 115 ~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp 180 (382)
T TIGR02631 115 RKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFALEP 180 (382)
T ss_pred HHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 34677789999999999988753221000000000011134556778888888886 58887754
No 221
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=34.67 E-value=3.2e+02 Score=27.18 Aligned_cols=65 Identities=17% Similarity=0.358 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCC-----CCCCChHHHHHHHHHHHHHHHhcCCCCEEEE
Q 014151 174 DPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRC-----MSDPSGDTLQDWIDEMSAFVKSIDKKHLVTV 248 (430)
Q Consensus 174 d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~-----~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~ 248 (430)
+++.++.|.+-+..++++ |+=+---+-||--+.+.. ....+.+.+..+++++.+++++ +.++++
T Consensus 88 ~~~~R~~Fi~si~~~~~~--------~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l~~---~~~ls~ 156 (345)
T cd02878 88 KPANRDTFANNVVNFVNK--------YNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKLPS---GKSLSI 156 (345)
T ss_pred CHHHHHHHHHHHHHHHHH--------cCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCc---CcEEEE
Confidence 788899999888888888 655544455775433321 0111346777888888777654 556666
Q ss_pred c
Q 014151 249 G 249 (430)
Q Consensus 249 G 249 (430)
.
T Consensus 157 a 157 (345)
T cd02878 157 A 157 (345)
T ss_pred E
Confidence 4
No 222
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=34.63 E-value=1e+02 Score=32.41 Aligned_cols=47 Identities=30% Similarity=0.374 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 014151 80 GAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLL 138 (430)
Q Consensus 80 ~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil 138 (430)
.+.++.|-+.|+|++|+ -|++|++ ++.-++++.+=+.+++.|..|=+
T Consensus 20 ~e~l~~li~aG~nV~Rl-NfSHG~~-----------e~h~~~i~~vR~~~~~~~~~vaI 66 (477)
T COG0469 20 EEMLEKLIEAGMNVVRL-NFSHGDH-----------EEHKKRIDNVREAAEKLGRPVAI 66 (477)
T ss_pred HHHHHHHHHccCcEEEE-ecCCCCh-----------HHHHHHHHHHHHHHHHhCCceEE
Confidence 46677788999999999 5566633 45567778888888888776643
No 223
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=33.93 E-value=62 Score=30.74 Aligned_cols=60 Identities=12% Similarity=0.267 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCC---hHHHHHHHHHHHHHHHcCCEEEE
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFD---ERVFKALDHVIVEARKNGVRLLL 138 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~d---e~~l~~lD~~l~~A~~~Gi~vil 138 (430)
.+.+.+.++.+.++|+..|=+|+|+.-.|.+ .+.+.+ .-..+.+++.++...++||+|-+
T Consensus 38 ~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R---~~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~ 100 (241)
T PRK14842 38 ANAIDRLMDASLEYGLKNISLYAFSTENWKR---PITEIRSIFGLLVEFIETRLDTIHARGIRIHH 100 (241)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 4678899999999999999999998543532 111111 11234555566677889999954
No 224
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=33.87 E-value=2.5e+02 Score=27.65 Aligned_cols=66 Identities=11% Similarity=0.187 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccc---cCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQ---ISPGQFDERVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~---~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
+.+++.+.++.+++.|+.+==+|. +..|.... ...-.+|++.|....++++..+++|++|++.++.
T Consensus 27 ~q~~v~~~~~~~r~~~iP~d~i~l--d~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P 95 (317)
T cd06599 27 AQEALLEFIDKCREHDIPCDSFHL--SSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKP 95 (317)
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEE--eccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 367899999999999987655543 11232110 0012466777777889999999999999986654
No 225
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=33.63 E-value=76 Score=31.82 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014151 80 GAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSL 140 (430)
Q Consensus 80 ~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l 140 (430)
.-..+.++++|.++|=+.++...+ .+...+...++.+.++.++|+++||-+++-+
T Consensus 109 ~~sve~a~~~GAdAVk~lv~~~~d------~~~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 109 NWSVRRIKEAGADAVKLLLYYRPD------EDDAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred cccHHHHHHcCCCEEEEEEEeCCC------cchHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 334566899999999997763210 0112246788899999999999999998864
No 226
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=33.10 E-value=91 Score=29.97 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 80 GAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 80 ~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
.++++.+.+.|+..||+... ...++.+...++.|+++|++|.+.+.+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~----------------~~~~~~~~~~i~~ak~~G~~v~~~~~~ 131 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFH----------------KHEFDEALPLIKAIKEKGYEVFFNLMA 131 (266)
T ss_pred HHHHHHHhcCCcCEEEEecc----------------cccHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 46788889999999998321 124778889999999999999887643
No 227
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=32.75 E-value=65 Score=32.54 Aligned_cols=61 Identities=11% Similarity=0.127 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 80 GAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 80 ~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
.++++.+.+.|+..||++.... ....+..-+.-.++.++.+...++.|+++|++|.+++.+
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S--d~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ed 134 (363)
T TIGR02090 74 KKDIDKAIDCGVDSIHTFIATS--PIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAED 134 (363)
T ss_pred HHHHHHHHHcCcCEEEEEEcCC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 5778889999999999854321 000011111123667899999999999999999887643
No 228
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=32.20 E-value=78 Score=32.15 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHc-CCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhh
Q 014151 76 RARVGAMLQAGAKM-GLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYV 154 (430)
Q Consensus 76 ~~~~~~~~~~~~~~-G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~ 154 (430)
+..|+-||+.++++ -=|++-+.+.+. --|--++|+++ +|.++++.|+++||.||-+-.-.|.-||+.+.++
T Consensus 182 e~~weIDL~~veal~DENT~AivviNP-----~NPcGnVys~~---HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvp 253 (447)
T KOG0259|consen 182 EKDWEIDLDGVEALADENTVAIVVINP-----NNPCGNVYSED---HLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVP 253 (447)
T ss_pred cccceechHHHHHhhccCeeEEEEeCC-----CCCCcccccHH---HHHHHHHHHHHhCCeEEehhhcceeecCCCCccc
Confidence 45677777777765 467777755432 11222578754 5778999999999999987554456677776554
Q ss_pred h
Q 014151 155 N 155 (430)
Q Consensus 155 ~ 155 (430)
.
T Consensus 254 m 254 (447)
T KOG0259|consen 254 M 254 (447)
T ss_pred h
Confidence 3
No 229
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.98 E-value=68 Score=30.33 Aligned_cols=63 Identities=10% Similarity=0.196 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLL 138 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil 138 (430)
.+.+.+.++.+.++|+..|=+|+||.-.|.+-+.+-...=.-.-+.+++.++...++||+|-+
T Consensus 33 ~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~ 95 (233)
T PRK14841 33 AEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDREMELLRRERVRVRI 95 (233)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 467889999999999999999999853453211000000011223455666777889999854
No 230
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=31.70 E-value=1.7e+02 Score=34.48 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=42.3
Q ss_pred EEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEE
Q 014151 57 YVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRL 136 (430)
Q Consensus 57 ~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~v 136 (430)
.++|.|..- ...+..+.++...+.+++.|++++|++-.-+ .++.|...++++++.|..+
T Consensus 610 l~Rg~n~vg-----y~~ypd~vv~~f~~~~~~~GidifrifD~lN----------------~~~n~~~~~~~~~~~g~~~ 668 (1143)
T TIGR01235 610 LLRGANGVG-----YTNYPDNVVKYFVKQAAQGGIDIFRVFDSLN----------------WVENMRVGMDAVAEAGKVV 668 (1143)
T ss_pred eeccccccC-----ccCCCHHHHHHHHHHHHHcCCCEEEECccCc----------------CHHHHHHHHHHHHHcCCEE
Confidence 367777421 1123467888999999999999999953211 1455667777777777766
Q ss_pred EEec
Q 014151 137 LLSL 140 (430)
Q Consensus 137 il~l 140 (430)
..++
T Consensus 669 ~~~i 672 (1143)
T TIGR01235 669 EAAI 672 (1143)
T ss_pred EEEE
Confidence 5554
No 231
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.55 E-value=68 Score=30.63 Aligned_cols=63 Identities=13% Similarity=0.171 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLL 138 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil 138 (430)
.+.+.+.+..+.++|+..|=+|+|+-..|..-+.+-...-.-.-+.+++.++...++|++|-+
T Consensus 50 ~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~Lm~L~~~~l~~~~~~~~~~~iri~~ 112 (249)
T PRK14831 50 VDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFLMTLFERVLRRELEELMEENVRIRF 112 (249)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 567899999999999999999999843353211000000011223455556678889998855
No 232
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=31.44 E-value=1.2e+02 Score=25.09 Aligned_cols=43 Identities=23% Similarity=0.533 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEE
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLL 137 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vi 137 (430)
..+.+.+.++.+.++|++ ++|.++ |..+ .++++.|+++||+++
T Consensus 64 ~~~~~~~~v~~~~~~g~~--~v~~~~-----------g~~~-------~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVK--AVWLQP-----------GAES-------EELIEAAREAGIRVI 106 (116)
T ss_dssp -HHHHHHHHHHHHHHT-S--EEEE-T-----------TS---------HHHHHHHHHTT-EEE
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEEc-----------chHH-------HHHHHHHHHcCCEEE
Confidence 478899999999999988 455432 2222 367899999999986
No 233
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=31.04 E-value=70 Score=32.30 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCc-cccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 80 GAMLQAGAKMGLTVCRTWAFNDGGYNS-LQISPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 80 ~~~~~~~~~~G~n~vR~~~~~~g~~~~-~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
.++++.+.+.|+..||++.... +. ++..-+.--++.++.+.+.++.|+++|+.|.+++.
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~S---d~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~e 134 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVS---DLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGE 134 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccC---HHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeec
Confidence 5678888999999999965321 10 01001111367788999999999999999877654
No 234
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=30.79 E-value=4.1e+02 Score=24.97 Aligned_cols=52 Identities=8% Similarity=0.146 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 014151 79 VGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLL 138 (430)
Q Consensus 79 ~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil 138 (430)
+.+.|+.++++|++.|-+|......|. +..+++ +.++++-+.++++||.+.+
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~~~~-----~~~~~~---~~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRSWK-----GVRLSE---ETAEKFKEALKENNIDVSV 63 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCCCCC-----CCCCCH---HHHHHHHHHHHHcCCCEEE
Confidence 568999999999999999764321111 112333 3466777788899998643
No 235
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=30.71 E-value=1.3e+02 Score=30.12 Aligned_cols=46 Identities=22% Similarity=0.143 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 80 GAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 80 ~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
.++++.+.+.|++.||+..++. + .+.+.+.++.|+++|+.|.+.+.
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~--------------e--~~~~~~~i~~ak~~G~~v~~~l~ 136 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCT--------------E--ADVSEQHIGLARELGMDTVGFLM 136 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecc--------------h--HHHHHHHHHHHHHCCCeEEEEEE
Confidence 3678999999999999854321 1 23467889999999999988764
No 236
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=30.67 E-value=2e+02 Score=27.82 Aligned_cols=61 Identities=20% Similarity=0.219 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
+.+++...-+..++.|++.+|-=+|-. .++|=.|.--..+.|..+-+.++++|+-++-..-
T Consensus 57 s~E~i~~~A~~vk~~Ga~~lRGgafKP------RTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEvm 117 (286)
T COG2876 57 SEEQVRETAESVKAAGAKALRGGAFKP------RTSPYSFQGLGEEGLKLLKRAADETGLPVVTEVM 117 (286)
T ss_pred CHHHHHHHHHHHHHcchhhccCCcCCC------CCCcccccccCHHHHHHHHHHHHHcCCeeEEEec
Confidence 588999999999999999999633311 1233223233346778888889999998876543
No 237
>PF10035 DUF2179: Uncharacterized protein conserved in bacteria (DUF2179); InterPro: IPR019264 This entry, found mostly in hypothetical bacterial proteins, has no known function. ; PDB: 3HLU_B.
Probab=30.49 E-value=54 Score=23.06 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCCCCEEEEc
Q 014151 230 IDEMSAFVKSIDKKHLVTVG 249 (430)
Q Consensus 230 ~~~~~~~Ir~~dp~~lV~~G 249 (430)
+.++...|+++||+..|++.
T Consensus 29 ~~~l~~~I~~~Dp~AFi~v~ 48 (55)
T PF10035_consen 29 LPKLKKIIKEIDPKAFISVS 48 (55)
T ss_dssp HHHHHHHHHCC-TT-EEEE-
T ss_pred HHHHHHHHHHhCCCEEEEEE
Confidence 36778889999999999874
No 238
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=30.36 E-value=1.8e+02 Score=28.35 Aligned_cols=83 Identities=18% Similarity=0.186 Sum_probs=47.1
Q ss_pred ceeEEeecCCCCCCCCC----ChHHHHHHHHHHHHHHHhc-CCCCEEEEccCCccCCCCCCCcccCccchhhccC-cch-
Q 014151 205 TIFAWELINEPRCMSDP----SGDTLQDWIDEMSAFVKSI-DKKHLVTVGLEGFYGPKSPKRLTVNPEMWASALG-SDF- 277 (430)
Q Consensus 205 ~I~~wel~NEp~~~~~~----~~~~~~~w~~~~~~~Ir~~-dp~~lV~~G~~g~~~~~~~~~~~~np~~w~~~~g-~df- 277 (430)
.|-++.++=|...-... ..-....-++++++.+|++ .|...||.+-+ + . +.....|.+ ..| +-|
T Consensus 19 gVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~ilG~~~kitYAAD-W-s----EY~~~~p~d---g~gd~~f~ 89 (299)
T PF13547_consen 19 GVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAILGPGTKITYAAD-W-S----EYFGYQPAD---GSGDVYFH 89 (299)
T ss_pred CCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHhCCCceEEEecc-C-H----HhcCcCCCC---CCCccccc
Confidence 47789999998753221 1113344567888889985 58889988642 1 0 000011100 001 111
Q ss_pred -hhccCCCCcceEEeeecCC
Q 014151 278 -IRNSNNDNIDFASVHIYPD 296 (430)
Q Consensus 278 -~~~~~~~~iD~~s~H~Y~~ 296 (430)
....++++|||+++..|.+
T Consensus 90 LDpLWa~~~IDfIGID~Y~P 109 (299)
T PF13547_consen 90 LDPLWADPNIDFIGIDNYFP 109 (299)
T ss_pred CcccccCCcCCEEEeecccc
Confidence 1235678999999999964
No 239
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=30.06 E-value=1.3e+02 Score=29.92 Aligned_cols=46 Identities=22% Similarity=0.121 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 80 GAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 80 ~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
.++++.+.+.|+..||+..++. + .+...+.++.|++.|+.|...+.
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~--------------e--~d~~~~~i~~ak~~G~~v~~~l~ 135 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCT--------------E--ADVSEQHIGMARELGMDTVGFLM 135 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccc--------------h--HHHHHHHHHHHHHcCCeEEEEEE
Confidence 4678999999999999854321 1 23467889999999999987664
No 240
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=29.59 E-value=80 Score=30.66 Aligned_cols=61 Identities=18% Similarity=0.087 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 80 GAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 80 ~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
+++++.+.+.|++.|++..-.. .. ..+..-+.--++.++.+.++++.|+++|++|.+.+.+
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S-~~-h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d 137 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGS-LK-HCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED 137 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCC-HH-HHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe
Confidence 4578889999999999854211 00 0011111223788999999999999999999888754
No 241
>TIGR03586 PseI pseudaminic acid synthase.
Probab=29.45 E-value=2.3e+02 Score=28.26 Aligned_cols=68 Identities=18% Similarity=0.243 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCC-----C-CccccCCCCCC-----------hHHHHHHHHHHHHHHHcCCEEE
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGG-----Y-NSLQISPGQFD-----------ERVFKALDHVIVEARKNGVRLL 137 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~-----~-~~~~~~pg~~d-----------e~~l~~lD~~l~~A~~~Gi~vi 137 (430)
+.+...+.++.+++.|.++|++-.|.... . ..+...++.|+ +-..+.+.++.+.|+++||.++
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~ 94 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIF 94 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEE
Confidence 68899999999999999999985442110 0 00000111221 1123445678888999999999
Q ss_pred EeccC
Q 014151 138 LSLVN 142 (430)
Q Consensus 138 l~l~~ 142 (430)
-+.++
T Consensus 95 stpfd 99 (327)
T TIGR03586 95 SSPFD 99 (327)
T ss_pred EccCC
Confidence 88765
No 242
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.38 E-value=84 Score=29.82 Aligned_cols=60 Identities=17% Similarity=0.321 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCC---hHHHHHHHHHHHHHHHcCCEEEE
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFD---ERVFKALDHVIVEARKNGVRLLL 138 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~d---e~~l~~lD~~l~~A~~~Gi~vil 138 (430)
...+.+.++.+.++|+..|=+|+|+--.|.. .+.+.+ .-.-+.++..++...++||+|-+
T Consensus 39 ~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R---~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~ 101 (239)
T PRK14839 39 VEAIRRVVEAAPDLGIGTLTLYAFSSDNWRR---PAAEVGGLMRLLRAYLRNETERLARNGVRLTV 101 (239)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEechhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 4678899999999999999999998533532 111111 11123445556677889999854
No 243
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=29.32 E-value=99 Score=28.75 Aligned_cols=65 Identities=9% Similarity=0.187 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
....++..++.+++.|+..+|++.... ....+..-+.--+..++.+.+++..|+++|+.|.+.+.
T Consensus 65 ~~~~i~~~~~~~~~~g~~~i~i~~~~s--~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~ 129 (237)
T PF00682_consen 65 NEEDIERAVEAAKEAGIDIIRIFISVS--DLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE 129 (237)
T ss_dssp CHHHHHHHHHHHHHTTSSEEEEEEETS--HHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET
T ss_pred hHHHHHHHHHhhHhccCCEEEecCccc--HHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc
Confidence 366788888889999999999854211 00001011222367789999999999999999977654
No 244
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=29.19 E-value=1.8e+02 Score=27.21 Aligned_cols=46 Identities=13% Similarity=0.162 Sum_probs=34.9
Q ss_pred HHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcc
Q 014151 83 LQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQ 145 (430)
Q Consensus 83 ~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~ 145 (430)
.+.+.+.|.+.+-+-...+ ..-+...+..|+++|+.+.++|.+.|+
T Consensus 73 ~~ma~~aGAd~~tV~g~A~-----------------~~TI~~~i~~A~~~~~~v~iDl~~~~~ 118 (217)
T COG0269 73 ARMAFEAGADWVTVLGAAD-----------------DATIKKAIKVAKEYGKEVQIDLIGVWD 118 (217)
T ss_pred HHHHHHcCCCEEEEEecCC-----------------HHHHHHHHHHHHHcCCeEEEEeecCCC
Confidence 3456788999888733211 455778999999999999999988663
No 245
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=29.18 E-value=1.6e+02 Score=31.87 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSL 140 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l 140 (430)
..+.++.+++.+.+.|+..+|++.... + .+.+...++.|+++|+.+..++
T Consensus 89 pddvv~~~v~~a~~~Gvd~irif~~ln--d--------------~~n~~~~i~~ak~~G~~v~~~i 138 (582)
T TIGR01108 89 ADDVVERFVKKAVENGMDVFRIFDALN--D--------------PRNLQAAIQAAKKHGAHAQGTI 138 (582)
T ss_pred chhhHHHHHHHHHHCCCCEEEEEEecC--c--------------HHHHHHHHHHHHHcCCEEEEEE
Confidence 356788999999999999999964321 0 2567788888999998887664
No 246
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=29.14 E-value=3.9e+02 Score=28.37 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhhh
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVN 155 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~ 155 (430)
.+.+...++.+++.|++-|++++|.||... .| ..+...++++.+.+++.|.--|-++... |=.|+..-.
T Consensus 123 ~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~----~p----~s~~~~~~~l~~~~~~~~~~~iasv~GR---yyaMDRd~r 191 (501)
T TIGR01307 123 IDHLIALIELAAERGIEKVVLHAFTDGRDT----AP----KSAESYLEQLQAFLKEIGNGRIATISGR---YYAMDRDQR 191 (501)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEecCCCCC----Cc----hhHHHHHHHHHHHHHHhCCEEEEEEeCc---ceeecCccc
Confidence 577889999999999999999999987431 12 4567778888888888787666666532 224554445
Q ss_pred hhh
Q 014151 156 WAW 158 (430)
Q Consensus 156 W~~ 158 (430)
|..
T Consensus 192 w~r 194 (501)
T TIGR01307 192 WDR 194 (501)
T ss_pred hHH
Confidence 643
No 247
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=28.88 E-value=1e+02 Score=32.95 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCC--CCcc-ccCCCCCCh--HHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 77 ARVGAMLQAGAKMGLTVCRTWAFNDGG--YNSL-QISPGQFDE--RVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 77 ~~~~~~~~~~~~~G~n~vR~~~~~~g~--~~~~-~~~pg~~de--~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
.-+..-++.++++|++++=+-.+..-. +... .......++ -..+.+..+++++.+.||++|+++.
T Consensus 40 ~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~v 109 (545)
T KOG0471|consen 40 KGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLV 109 (545)
T ss_pred ccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeec
Confidence 346788899999999998774432100 0000 000111121 2467889999999999999999874
No 248
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=28.82 E-value=3.3e+02 Score=23.23 Aligned_cols=23 Identities=4% Similarity=-0.041 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEE
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRT 96 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~ 96 (430)
...+.+.+.++.+++.|+..|-+
T Consensus 110 ~~~~~vv~vmd~l~~aG~~~v~l 132 (141)
T PRK11267 110 VDYETLMKVMDTLHQAGYLKIGL 132 (141)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEE
Confidence 46788889999999999886665
No 249
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.64 E-value=87 Score=29.95 Aligned_cols=60 Identities=17% Similarity=0.282 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCC---hHHHHHHHHHHHHHHHcCCEEEE
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFD---ERVFKALDHVIVEARKNGVRLLL 138 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~d---e~~l~~lD~~l~~A~~~Gi~vil 138 (430)
.+.+++.++.+.++|+..|=+|+|+--.|.+ .+.+.+ .-.-+.+++.++...++||+|-+
T Consensus 52 ~~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R---~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~ 114 (250)
T PRK14840 52 AKSLPQIVDTALHLGIEVLTLFAFSTENFSR---SKEEVAELFSLFNSQLDSQLPYLHENEIRLRC 114 (250)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 5678999999999999999999998533532 111111 11234566667778889999855
No 250
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=28.62 E-value=1.9e+02 Score=27.95 Aligned_cols=56 Identities=14% Similarity=0.269 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChH------HHHHHHHHHHHHHHcCCEEEEe
Q 014151 77 ARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDER------VFKALDHVIVEARKNGVRLLLS 139 (430)
Q Consensus 77 ~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~------~l~~lD~~l~~A~~~Gi~vil~ 139 (430)
-.++..|+.++++|+.-|-=|+ .+---.|.|.+. .+++==++|..|++.||..+.-
T Consensus 95 ~~~~~fl~~lk~~Gf~GV~NfP-------TvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~y 156 (268)
T PF09370_consen 95 RDMDRFLDELKELGFSGVQNFP-------TVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAY 156 (268)
T ss_dssp --HHHHHHHHHHHT-SEEEE-S--------GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--E
T ss_pred CcHHHHHHHHHHhCCceEEECC-------cceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeee
Confidence 3588999999999999777432 111111212111 1222237899999999977543
No 251
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=28.28 E-value=96 Score=30.43 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccC-C--CCCccccCCC-CCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFND-G--GYNSLQISPG-QFDERVFKALDHVIVEARKNGVRLLLS 139 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~-g--~~~~~~~~pg-~~de~~l~~lD~~l~~A~~~Gi~vil~ 139 (430)
++.+.++.|+.+++.|+|++=+=+-.+ | .++.--+-+. .=.-.-|..+..++..|++.|||+|--
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~Di~~~iKkaKe~giY~IAR 143 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFKDIEPVIKKAKENGIYAIAR 143 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccccccHHHHHHHHhcCeEEEEE
Confidence 467889999999999999887622111 1 1111000000 001122667789999999999999864
No 252
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41.6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are all sequences found within hypothetical proteins expressed by various bacteria, archaea and phage. The region concerned is approximately 150 residues long.
Probab=28.26 E-value=3.3e+02 Score=22.93 Aligned_cols=41 Identities=12% Similarity=0.081 Sum_probs=29.6
Q ss_pred CCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014151 52 DGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRT 96 (430)
Q Consensus 52 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~ 96 (430)
.++++.+.|.| +..+....+..-+.+.+..++.+|+..+.+
T Consensus 11 ~~~~~~~I~lN----PS~A~~~~~D~T~~~~~~~a~~~gyg~~~i 51 (136)
T PF07799_consen 11 GKPPLLFIGLN----PSTADAEKDDPTIRRCINFARRWGYGGVII 51 (136)
T ss_pred CCCEEEEEEeC----CCCCCCcCCCHHHHHHHHHHhhcCCCeEEE
Confidence 56788899999 233222234566777888889999998887
No 253
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=28.10 E-value=2.7e+02 Score=27.12 Aligned_cols=103 Identities=19% Similarity=0.352 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCc
Q 014151 116 ERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTI 195 (430)
Q Consensus 116 e~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~ 195 (430)
+..++.+..+. ++..|++|++++-. |.... ..|.. ...+++.++.|.+-+..++++
T Consensus 58 ~~~~~~~~~~~--~~~~~~kvllsigg-~~~~~-----~~~~~------------~~~~~~~r~~f~~~i~~~l~~---- 113 (343)
T PF00704_consen 58 SSGFKNLKELK--AKNPGVKVLLSIGG-WGMSS-----DGFSQ------------LLSNPAKRQNFINNIVSFLKK---- 113 (343)
T ss_dssp HHHHHHHHHHH--HHHTT-EEEEEEEE-TTSSH-----HHHHH------------HHHSHHHHHHHHHHHHHHHHH----
T ss_pred ccchhHHHHHH--hhccCceEEEEecc-ccccc-----ccccc------------ccccHHHHHHHHHhhhhhhcc----
Confidence 44445554444 56669999998843 21100 01111 123677888888888888888
Q ss_pred ccccccCCCceeEEeec-CCCCCCCCCChHHHHHHHHHHHHHHHhcCC---CCEEEEc
Q 014151 196 TGVEYRNDPTIFAWELI-NEPRCMSDPSGDTLQDWIDEMSAFVKSIDK---KHLVTVG 249 (430)
Q Consensus 196 tg~~yk~~p~I~~wel~-NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp---~~lV~~G 249 (430)
|+=+---+-||-. +++. ....+.+..+++++.+.+++... +..|++.
T Consensus 114 ----y~~DGidiD~e~~~~~~~---~~~~~~~~~~l~~L~~~l~~~~~~~~~~~ls~a 164 (343)
T PF00704_consen 114 ----YGFDGIDIDWEYPSSSGD---PQDKDNYTAFLKELRKALKRANRSGKGYILSVA 164 (343)
T ss_dssp ----HT-SEEEEEESSTTSTSS---TTHHHHHHHHHHHHHHHHHHHHHHHSTSEEEEE
T ss_pred ----cCcceeeeeeeecccccc---chhhhhhhhhhhhhhhhhcccccccceeEEeec
Confidence 6644333333332 1111 12357888999999988887543 6677664
No 254
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=27.66 E-value=95 Score=29.20 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLL 138 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil 138 (430)
.+.+++.++.+.++|+..|=+|+||--.|.+-+.+-...=.-..+.+++.++...++||+|-+
T Consensus 29 ~~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~ 91 (226)
T TIGR00055 29 VKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDREVKELHRYNVRIRI 91 (226)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 467899999999999999999999854453211000000001223445555567789999955
No 255
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=27.43 E-value=5.1e+02 Score=24.08 Aligned_cols=92 Identities=12% Similarity=0.075 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCc
Q 014151 116 ERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTI 195 (430)
Q Consensus 116 e~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~ 195 (430)
++..+.++++++.|++.|...|.... |..+ + . ...++..+.+.+.++.++.+
T Consensus 80 ~~~~~~~~~~i~~a~~lg~~~i~~~~------g~~~---------~----~-----~~~~~~~~~~~~~l~~l~~~---- 131 (254)
T TIGR03234 80 EEFREGVALAIAYARALGCPQVNCLA------GKRP---------A----G-----VSPEEARATLVENLRYAADA---- 131 (254)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECc------CCCC---------C----C-----CCHHHHHHHHHHHHHHHHHH----
Confidence 34568899999999999999876432 1100 0 0 11245566677778887765
Q ss_pred ccccccCCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCC
Q 014151 196 TGVEYRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKH 244 (430)
Q Consensus 196 tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~ 244 (430)
-++..-.++.|..|=+..... +..=..++...|+++++..
T Consensus 132 ----A~~~gi~l~lE~~~~~~~~~~-----~l~t~~~~~~li~~v~~~~ 171 (254)
T TIGR03234 132 ----LDRIGLTLLIEPINSFDMPGF-----FLTTTEQALAVIDDVGREN 171 (254)
T ss_pred ----HHhcCCEEEEEECCcccCCCC-----hhcCHHHHHHHHHHhCCCC
Confidence 445556677776553322110 1111355666677776433
No 256
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.38 E-value=96 Score=29.27 Aligned_cols=60 Identities=13% Similarity=0.287 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCC---hHHHHHHHHHHHHHHHcCCEEEE
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFD---ERVFKALDHVIVEARKNGVRLLL 138 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~d---e~~l~~lD~~l~~A~~~Gi~vil 138 (430)
.+.+++.++.+.++|+..|=+|+|+--.|..- +.+.+ .-.-+.|.+.+....++||+|-+
T Consensus 36 ~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp---~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~ 98 (230)
T PRK14837 36 LKRAKEIVKHSLKLGIKYLSLYVFSTENWNRT---DSEIEHLMFLIADYLSSEFNFYKKNNIKIIV 98 (230)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 46789999999999999999999985345321 11111 01112344455567788999854
No 257
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=27.35 E-value=54 Score=23.43 Aligned_cols=20 Identities=15% Similarity=0.198 Sum_probs=14.5
Q ss_pred chhhhhHHHHHHHHHHhhCC
Q 014151 9 FFPIIGFASCVAFIYMSFGG 28 (430)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ 28 (430)
.-|++.++.|+.+++|++=+
T Consensus 14 ~~~lLiliis~~f~lI~~l~ 33 (61)
T PF06692_consen 14 SGPLLILIISFVFFLITSLG 33 (61)
T ss_pred hhHHHHHHHHHHHHHHhhhc
Confidence 45677888888888886544
No 258
>COG3525 Chb N-acetyl-beta-hexosaminidase [Carbohydrate transport and metabolism]
Probab=27.05 E-value=1.6e+02 Score=32.09 Aligned_cols=172 Identities=16% Similarity=0.154 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCCC-------Ccc-------------cc------CC--CCCChHHHHHHHHH
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRTWAFNDGGY-------NSL-------------QI------SP--GQFDERVFKALDHV 125 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~-------~~~-------------~~------~p--g~~de~~l~~lD~~ 125 (430)
.+.+.+.+.++.|++.++|++.++.-.|..| |.+ .| ++ |-|.+ +.+..+
T Consensus 275 ~s~~~vk~~Id~laa~Kln~~hlHLtddegwrleIk~~PkLT~iga~R~~de~~~Pq~g~~pe~~ggfytq---d~~rel 351 (732)
T COG3525 275 HSTDDVKRLIDQLAAHKLNVLHLHLTDDEGWRLEIKRYPKLTTIGAWRIPDEPDLPQLGYGPERMGGFYTQ---DDIREL 351 (732)
T ss_pred CCHHHHHHHHHHHHHhhcceEEEeeccCcceeeccccCCccccccccccCCCcCCcccccCcccccCcccH---HHHHHH
Confidence 4678899999999999999999876555444 110 00 00 33443 346789
Q ss_pred HHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCC--CCCCCCCCCCH-------HHHHHHHHHHHHHHhccCCcc
Q 014151 126 IVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGI--SSSNDSFFFDP-------SIHKYFKHYVKTVLTRKNTIT 196 (430)
Q Consensus 126 l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~--~~~~~~f~~d~-------~~~~~~~~~~~~lv~R~n~~t 196 (430)
++-|..++|.||+.+.-.-+.-...-.|+ |... |... ......++.++ ...+...+.+++|+. .||.+
T Consensus 352 v~yAsar~ItviPeiD~PgHa~aav~A~p-~~~l-~~a~~ds~~sv~~~~n~~ln~tl~~t~~fldkv~dEv~~-lfPs~ 428 (732)
T COG3525 352 VAYASARQITVIPEIDMPGHARAAVVAYP-DLNL-GRADPDSYDSVQAYLNPVLNPTLDPTYQFLDKVLDEVAD-LFPST 428 (732)
T ss_pred HHHHhhcCceecCCcCCcchhhhhhhhCc-cccc-cccCCCcchhhhhcccccccccccHHHHHHHHHHHHHHH-hCCcc
Confidence 99999999999987632100000011222 2111 1110 01223344444 223333344444444 37777
Q ss_pred cccccCCCceeEEeecC-CCCCCCC------CChHHHHH-HHHHHHHHHHhcCCCCEEEEccCCcc
Q 014151 197 GVEYRNDPTIFAWELIN-EPRCMSD------PSGDTLQD-WIDEMSAFVKSIDKKHLVTVGLEGFY 254 (430)
Q Consensus 197 g~~yk~~p~I~~wel~N-Ep~~~~~------~~~~~~~~-w~~~~~~~Ir~~dp~~lV~~G~~g~~ 254 (430)
-++.+.+..+.. ++.- +|-+..- ...-.+.. +++++.+.+.+.+.. +|.-+ +++.
T Consensus 429 ~iHiGgDE~~~~-qwk~~sp~~q~l~~~~G~~d~~~lq~~fi~q~~k~l~~~Gr~-~igW~-e~~~ 491 (732)
T COG3525 429 TIHIGGDEFIDG-QWKASSPLVQALMEKLGNKDTFELQSYFITQVGKTLASKGRR-LIGWD-EGAH 491 (732)
T ss_pred eEEeccchhccC-eeeccCHHHHHHHHHhccCCcchhhHHHHHHHHHHHHhcCce-EEeec-chhc
Confidence 777777665543 2222 4444210 01123343 456777777776655 66544 3443
No 259
>PRK10658 putative alpha-glucosidase; Provisional
Probab=26.99 E-value=2.5e+02 Score=30.92 Aligned_cols=109 Identities=15% Similarity=0.203 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCc-cccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchh
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNS-LQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQY 153 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~-~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y 153 (430)
+++.+.+.++.+++.|+-+==++ +.. .|.. ..-..-.+|++.|.....+++..++.|++|++-+...-.. .+
T Consensus 281 ~e~~v~~~~~~~r~~~iP~d~i~-lD~-~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~-----~s 353 (665)
T PRK10658 281 DEATVNSFIDGMAERDLPLHVFH-FDC-FWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQ-----KS 353 (665)
T ss_pred CHHHHHHHHHHHHHcCCCceEEE-Ech-hhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCC-----Cc
Confidence 46778899999999998743222 111 1211 0001123555666666788999999999998865432100 01
Q ss_pred hhhhhh----------hCCCC------CCCCCCCCCCHHHHHHHHHHHHHHHh
Q 014151 154 VNWAWE----------EGIGI------SSSNDSFFFDPSIHKYFKHYVKTVLT 190 (430)
Q Consensus 154 ~~W~~~----------~G~~~------~~~~~~f~~d~~~~~~~~~~~~~lv~ 190 (430)
+.+... +|.+. +...---|+||++++.+.+.++.++.
T Consensus 354 ~~f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d 406 (665)
T PRK10658 354 PLFKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLD 406 (665)
T ss_pred hHHHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHh
Confidence 111100 01100 00011126899999999999988765
No 260
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=26.98 E-value=4e+02 Score=26.80 Aligned_cols=82 Identities=20% Similarity=0.244 Sum_probs=57.0
Q ss_pred CCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCC-------CEEEEccccC---CCCCccccCC---CCCC-hH
Q 014151 52 DGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGL-------TVCRTWAFND---GGYNSLQISP---GQFD-ER 117 (430)
Q Consensus 52 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-------n~vR~~~~~~---g~~~~~~~~p---g~~d-e~ 117 (430)
+.+.+.++|-..- .+++...+.-+.++++|- .++|.+.+-. .+|..+...| |.|+ ++
T Consensus 51 d~rllvI~GPCSI---------ed~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~KPRTs~g~kGl~~DP~ldgs~~i~~ 121 (349)
T PRK09261 51 DDRLLVVVGPCSI---------HDPKAALEYARRLAKLREELKDKLEIVMRVYFEKPRTTVGWKGLINDPDLDGSFDIND 121 (349)
T ss_pred CCCeEEEEcCCcC---------CCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCCCCcCCCcCcCccccccHHH
Confidence 5566778886632 146667777777777665 5899866421 2465554333 6777 89
Q ss_pred HHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 118 VFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 118 ~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
++..+.+++-...+.||.+.-.+.+
T Consensus 122 GL~~~R~ll~~~~e~GlpvatE~ld 146 (349)
T PRK09261 122 GLRIARKLLLDINELGLPAATEFLD 146 (349)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEecc
Confidence 9999999988889999999877655
No 261
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=26.91 E-value=1.6e+02 Score=31.70 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCC---C----CC-----ChHHHHHHHHHHHHHHHcCCEEEEe
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISP---G----QF-----DERVFKALDHVIVEARKNGVRLLLS 139 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~p---g----~~-----de~~l~~lD~~l~~A~~~Gi~vil~ 139 (430)
+.+..++.++.|+++.+|.+-++-.- |...+|-| + .| .+-..+.+...|+.|+++||+.+.-
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~---~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Y 189 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWM---YRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAY 189 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS-----SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeec---cccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehh
Confidence 46799999999999999999994321 21122211 1 11 1234678899999999999999883
No 262
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=26.85 E-value=1e+02 Score=31.05 Aligned_cols=60 Identities=13% Similarity=0.050 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCcc-ccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 79 VGAMLQAGAKMGLTVCRTWAFNDGGYNSL-QISPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 79 ~~~~~~~~~~~G~n~vR~~~~~~g~~~~~-~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
..++++.+.+.|+..|++++-.. +.+ +..-+.=-++.++.+.++++.|+++|++|...+.
T Consensus 123 n~~die~A~~~g~~~v~i~~s~S---d~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is 183 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASAS---ESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVS 183 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecC---HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 35788888999999999854211 011 1111222378899999999999999999976553
No 263
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=26.83 E-value=1e+02 Score=31.27 Aligned_cols=60 Identities=12% Similarity=0.154 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 80 GAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 80 ~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
+++++.+.+.|++.||++.... ...++..-+.--++.++.+...++.|+++|+.|.+++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~S--d~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e 137 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATS--DIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAE 137 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 5678888899999999854211 00011111222378899999999999999999988653
No 264
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=26.82 E-value=4.2e+02 Score=26.73 Aligned_cols=83 Identities=18% Similarity=0.224 Sum_probs=60.3
Q ss_pred CCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCC-------EEEEccccC---CCCCccccCC---CCCC-hH
Q 014151 52 DGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLT-------VCRTWAFND---GGYNSLQISP---GQFD-ER 117 (430)
Q Consensus 52 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n-------~vR~~~~~~---g~~~~~~~~p---g~~d-e~ 117 (430)
+.+.+.++|-..- .+++...+.-+.+++++.. ++|++.+-. .+|..+...| |.++ ++
T Consensus 51 d~rllvIvGPCSI---------hd~~~aleyA~rLk~l~~~~~d~l~ivmR~y~eKPRTs~gwkGl~~DP~ldgs~~i~~ 121 (356)
T PRK12822 51 DPRLLVIIGPCSI---------HDPQAALEYAKRLAVLQHQYLDQLYIVMRTYFEKPRTRKGWKGLIFDPDLDGSNDIEK 121 (356)
T ss_pred CCCeEEEEcCCcC---------CCHHHHHHHHHHHHHHHHhhcccEEEEEEeccccCCCCCCccccccCCCCCCCccHHH
Confidence 4456677786531 2578888888999999999 599865421 2365554333 5676 89
Q ss_pred HHHHHHHHHHHHHHcCCEEEEeccCC
Q 014151 118 VFKALDHVIVEARKNGVRLLLSLVNN 143 (430)
Q Consensus 118 ~l~~lD~~l~~A~~~Gi~vil~l~~~ 143 (430)
+++.+.+++....+.|+.+.-.+.+.
T Consensus 122 GL~i~R~ll~~~~~~GlPvatE~ld~ 147 (356)
T PRK12822 122 GLRLARQLLLSINTLGLATATEFLDT 147 (356)
T ss_pred HHHHHHHHHHHHHHhCCCEEEeeccc
Confidence 99999999999999999998777653
No 265
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=26.76 E-value=99 Score=28.97 Aligned_cols=60 Identities=20% Similarity=0.366 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCC---hHHHHHHHHHHHHHHHcCCEEEE
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFD---ERVFKALDHVIVEARKNGVRLLL 138 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~d---e~~l~~lD~~l~~A~~~Gi~vil 138 (430)
.+.+.+.++.+.++|+..+=+|+|+-..|.+ .+.+.+ .-.-..+++.++...++|++|-+
T Consensus 30 ~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R---~~~EV~~Lm~l~~~~l~~~~~~~~~~~i~vr~ 92 (221)
T cd00475 30 AEKLRDILRWCLELGVKEVTLYAFSTENWKR---PKEEVDFLMELFRDVLRRILKELEKLGVRIRI 92 (221)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeechhhhCc---CHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 4678899999999999999999998544532 111111 11234556667777889999855
No 266
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.09 E-value=1.1e+02 Score=28.90 Aligned_cols=63 Identities=21% Similarity=0.256 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLL 138 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil 138 (430)
...+.+.++.+.++|+..|=+|+|+.-.|.+-+.+-...-.-.-+.++..+....++|++|-+
T Consensus 23 ~~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~i~vr~ 85 (229)
T PRK10240 23 AKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRI 85 (229)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 467889999999999999999999854453211110000011223344555567788998854
No 267
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=25.83 E-value=2e+02 Score=27.44 Aligned_cols=46 Identities=24% Similarity=0.220 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 80 GAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 80 ~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
.++++.+.+.|++.||+..... ....+...++.|+++|+.|.+.+.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s----------------~~~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCT----------------EADVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechh----------------hHHHHHHHHHHHHHCCCeEEEEEE
Confidence 3778888999999999844211 123567889999999999988763
No 268
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=25.24 E-value=3.6e+02 Score=26.31 Aligned_cols=82 Identities=16% Similarity=0.184 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhhhhhh
Q 014151 79 VGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAW 158 (430)
Q Consensus 79 ~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~ 158 (430)
.++.++.++++|++++-. + +|.+.+.. ...+++.++|+-|-- . -|..+....|-.
T Consensus 72 p~~mi~~l~~~G~k~~l~-i-----~P~i~~~s------------~~~~e~~~~g~~vk~--~-----~g~~~~~~~~w~ 126 (303)
T cd06592 72 PKGMIDQLHDLGFRVTLW-V-----HPFINTDS------------ENFREAVEKGYLVSE--P-----SGDIPALTRWWN 126 (303)
T ss_pred HHHHHHHHHHCCCeEEEE-E-----CCeeCCCC------------HHHHhhhhCCeEEEC--C-----CCCCCcccceec
Confidence 678888899999987764 2 22222111 235568888875521 0 111110011110
Q ss_pred hhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhc
Q 014151 159 EEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTR 191 (430)
Q Consensus 159 ~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R 191 (430)
|. ...--+++|++++.+.+.++.++..
T Consensus 127 --g~----~~~~Dftnp~a~~w~~~~~~~~~~~ 153 (303)
T cd06592 127 --GT----AAVLDFTNPEAVDWFLSRLKSLQEK 153 (303)
T ss_pred --CC----cceEeCCCHHHHHHHHHHHHHHHHH
Confidence 10 0011168999999999999998855
No 269
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=24.72 E-value=1.3e+02 Score=28.37 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCccc-cCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 80 GAMLQAGAKMGLTVCRTWAFNDGGYNSLQ-ISPGQFDERVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 80 ~~~~~~~~~~G~n~vR~~~~~~g~~~~~~-~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
+++++.+++.|+..||+..... ..+. ..-+.=.+..++.+-..++.|+++|+.+.+.+..
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s---~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~ 137 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSAS---ETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLED 137 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecC---HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 6789999999999999844211 0000 0001112457888899999999999999988743
No 270
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=24.52 E-value=2.2e+02 Score=25.71 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=32.7
Q ss_pred HHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 82 MLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 82 ~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
.++.+.++|.+.|=++.... -..+.++++.|+++|+++++.+.+
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~-----------------~~~~~~~i~~~~~~g~~~~~~~~~ 111 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVAD-----------------DATIKGAVKAAKKHGKEVQVDLIN 111 (206)
T ss_pred HHHHHHHcCCCEEEEeccCC-----------------HHHHHHHHHHHHHcCCEEEEEecC
Confidence 57778999999887744310 123568899999999999998654
No 271
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=24.48 E-value=6.6e+02 Score=24.46 Aligned_cols=60 Identities=10% Similarity=0.137 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeE-EeecCCCCCCC-CCChHHHHHHHHHHHHHHHhcCC
Q 014151 172 FFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFA-WELINEPRCMS-DPSGDTLQDWIDEMSAFVKSIDK 242 (430)
Q Consensus 172 ~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~-wel~NEp~~~~-~~~~~~~~~w~~~~~~~Ir~~dp 242 (430)
..|++.|+.|.+-+..++++ |+=+---+- ||- |.... ..+.+.+..+++++.+.+++.+.
T Consensus 87 ~~~~~~R~~fi~s~~~~~~~--------~~~DGidiD~we~---p~~~~~~~d~~~~~~~l~el~~~l~~~~~ 148 (318)
T cd02876 87 LNDEQEREKLIKLLVTTAKK--------NHFDGIVLEVWSQ---LAAYGVPDKRKELIQLVIHLGETLHSANL 148 (318)
T ss_pred HcCHHHHHHHHHHHHHHHHH--------cCCCcEEEechhh---hcccCCHHHHHHHHHHHHHHHHHHhhcCC
Confidence 46889999999888888888 644432222 432 22110 11346788899999888876543
No 272
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.91 E-value=1e+02 Score=29.49 Aligned_cols=63 Identities=19% Similarity=0.270 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLL 138 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil 138 (430)
.+.+.+.++.+.++|+..|=+|+|+-..|.+-+.+-...=.-..+.+++.+....++|++|-+
T Consensus 44 ~~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~~~~~irv~v 106 (253)
T PRK14836 44 VRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALMELFLKALDREVDKLHRNGIRVRF 106 (253)
T ss_pred HHHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 467899999999999999999999854453211110000012334555666677889998855
No 273
>PTZ00445 p36-lilke protein; Provisional
Probab=23.82 E-value=1.9e+02 Score=26.99 Aligned_cols=65 Identities=11% Similarity=0.172 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccC-------CCCCccccC--CCCCChHHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFND-------GGYNSLQIS--PGQFDERVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~-------g~~~~~~~~--pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
..+..+...+.+++.|+++|=+ -|.. |+|. .+. .-.+-...-..+..++.++.++||+|++..++
T Consensus 27 ~~~~~~~~v~~L~~~GIk~Va~-D~DnTlI~~HsgG~~--~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfS 100 (219)
T PTZ00445 27 PHESADKFVDLLNECGIKVIAS-DFDLTMITKHSGGYI--DPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFS 100 (219)
T ss_pred HHHHHHHHHHHHHHcCCeEEEe-cchhhhhhhhccccc--CCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEcc
Confidence 3677888889999999999876 2111 1221 110 00111113345677899999999999886554
No 274
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=23.82 E-value=6.8e+02 Score=24.35 Aligned_cols=65 Identities=12% Similarity=0.024 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHH----HcCCCEEEEccccCCCCCccccCCCCCChHH-HHHHHHHHHHHHHcCCEEEEeccCC
Q 014151 75 SRARVGAMLQAGA----KMGLTVCRTWAFNDGGYNSLQISPGQFDERV-FKALDHVIVEARKNGVRLLLSLVNN 143 (430)
Q Consensus 75 ~~~~~~~~~~~~~----~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~-l~~lD~~l~~A~~~Gi~vil~l~~~ 143 (430)
+++.+.+.-+.++ ++|++.+|=-.|. .+-.++|..|.--+ -+.|+.+-+..+++||.|+-++|+.
T Consensus 28 s~e~~~~iA~~lk~i~~~~g~~~~fK~sf~----KapRTSp~sFqG~G~eeGL~iL~~vk~~~GlpvvTeV~~~ 97 (281)
T PRK12457 28 SLDFTLDVCGEYVEVTRKLGIPFVFKASFD----KANRSSIHSYRGVGLDEGLRIFEEVKARFGVPVITDVHEV 97 (281)
T ss_pred CHHHHHHHHHHHHHHHHHCCCcEEeeeccC----CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCceEEEeCCH
Confidence 3555555544444 6999998864442 11234555554434 3566667777899999999988874
No 275
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=23.76 E-value=1.4e+02 Score=29.54 Aligned_cols=54 Identities=11% Similarity=0.211 Sum_probs=41.6
Q ss_pred HHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 83 LQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 83 ~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
.++++++|.+.+-+-+..+ + .+|-..++.....+.++.++|++.||..++.+..
T Consensus 111 ~~rike~GadavK~Llyy~----p--D~~~~in~~k~a~vervg~eC~a~dipf~lE~lt 164 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD----V--DEPDEINEQKKAYIERIGSECVAEDIPFFLEILT 164 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC----C--CCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEee
Confidence 4568999999999866532 1 1233456777889999999999999999998764
No 276
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=23.74 E-value=3.8e+02 Score=25.00 Aligned_cols=64 Identities=19% Similarity=0.144 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCcccc-CCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQI-SPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~-~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
.+.+++.++.++++|..+|-+..... +..-.+ .|..-.+...+.+.++.+.|+++|+.+-+..+
T Consensus 83 ~~~~~~~i~~a~~lg~~~vv~~~g~~--~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~l~~e~~ 147 (274)
T COG1082 83 LEELKRAIELAKELGAKVVVVHPGLG--AGADDPDSPEEARERWAEALEELAEIAEELGIGLALENH 147 (274)
T ss_pred HHHHHHHHHHHHHcCCCeEEeecccC--CcCCCCCCCcccHHHHHHHHHHHHHHHHHhCCceEEeec
Confidence 45666788999999999888743211 111111 12222267889999999999999999987653
No 277
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=23.63 E-value=5.1e+02 Score=26.04 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=58.3
Q ss_pred CCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCC-------EEEEccccC---CCCCccccCC---CCCC-hH
Q 014151 52 DGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLT-------VCRTWAFND---GGYNSLQISP---GQFD-ER 117 (430)
Q Consensus 52 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n-------~vR~~~~~~---g~~~~~~~~p---g~~d-e~ 117 (430)
|.+.+.++|-..- .+++...+.-+.++++|.. ++|++.+-. .+|..+...| |.|+ ++
T Consensus 46 d~rllvIvGPCSI---------hd~~~a~eyA~rLk~l~~~~~d~l~ivmR~y~eKPRTt~GWKGli~DP~ld~sf~i~~ 116 (344)
T TIGR00034 46 DDRLLVVIGPCSI---------HDPEAAIEYATRLKALREELKDDLEIVMRVYFEKPRTTVGWKGLINDPDLNGSFRINH 116 (344)
T ss_pred CCCeEEEecCCCC---------CCHHHHHHHHHHHHHHHHhhhcceEEEEEeccccCCCccccccccCCCCcCCCCCHHH
Confidence 4566677886532 2567778888888888876 999976532 2476666556 3665 67
Q ss_pred HHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 118 VFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 118 ~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
++..+.+++-...+.||-+.-.+.+
T Consensus 117 GL~~~R~ll~~i~~~GlPvatE~ld 141 (344)
T TIGR00034 117 GLRIARKLLLDLVNLGLPIAGEFLD 141 (344)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEecC
Confidence 8888888887789999999776654
No 278
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=23.58 E-value=4.4e+02 Score=24.75 Aligned_cols=78 Identities=17% Similarity=0.214 Sum_probs=48.5
Q ss_pred EEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCE
Q 014151 56 LYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVR 135 (430)
Q Consensus 56 ~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~ 135 (430)
+.++.+|.-|....++ +.-..+.+...+.+++-|.+++=+-..++|+|+.--..+ ++....|..+-...+++||.
T Consensus 63 l~IvSINAlypFn~wt-~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~~vr~----~~lv~AlkaLkpil~~~gi~ 137 (272)
T COG4130 63 LTIVSINALYPFNEWT-EERVAEARGLADYAAACGAKALVLCPLNDGSWPGTAVRR----EDLVEALKALKPILDEYGIT 137 (272)
T ss_pred cEEEEeeccccccccC-hHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCcccch----HHHHHHHHHhhHHHHHhCcc
Confidence 4566777654432221 112456778899999999999988777888775432222 33344555555566677775
Q ss_pred EEE
Q 014151 136 LLL 138 (430)
Q Consensus 136 vil 138 (430)
=++
T Consensus 138 GLV 140 (272)
T COG4130 138 GLV 140 (272)
T ss_pred ccc
Confidence 544
No 279
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=23.50 E-value=4.7e+02 Score=22.40 Aligned_cols=48 Identities=21% Similarity=0.107 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEE
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRL 136 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~v 136 (430)
+.+..+..+....+-+-|- |+..-.|. ....+.+-++++.+++.|+.=
T Consensus 80 ~~~~l~~~l~~~~~~~~~~-~v~i~aD~-------------~v~y~~vv~vm~~l~~aG~~~ 127 (137)
T COG0848 80 SLEELEAALAALAKGKKNP-RVVIRADK-------------NVKYGTVVKVMDLLKEAGFKK 127 (137)
T ss_pred cHHHHHHHHHHHhcCCCCc-eEEEEeCC-------------CCCHHHHHHHHHHHHHcCCce
Confidence 4677788888777666663 33222232 112456778889999988754
No 280
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=23.46 E-value=5.3e+02 Score=26.01 Aligned_cols=82 Identities=20% Similarity=0.234 Sum_probs=57.2
Q ss_pred CCeEEEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCC-------EEEEccccC---CCCCccccCC---CCCC-hH
Q 014151 52 DGKALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLT-------VCRTWAFND---GGYNSLQISP---GQFD-ER 117 (430)
Q Consensus 52 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n-------~vR~~~~~~---g~~~~~~~~p---g~~d-e~ 117 (430)
+.+.+.++|-..- .+++...+.-+.+++++-. ++|.+.+-. .+|..+...| |.++ ++
T Consensus 52 d~rllvI~GPCSI---------~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPRT~~gwkGli~DP~ldgs~~i~~ 122 (353)
T PRK12755 52 DDRLLVVVGPCSI---------HDPEAALEYARRLKALADELSDRLLIVMRVYFEKPRTTVGWKGLINDPHLDGSFDIEE 122 (353)
T ss_pred CCCeEEEeCCCCC---------CCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCcCCcCCCCCccccccccHHH
Confidence 4566778886532 2467777777778888765 899865421 2365554333 5676 78
Q ss_pred HHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 118 VFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 118 ~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
++..+.+++-...+.||.+.-.+.+
T Consensus 123 GL~~~R~ll~~~~e~Glp~atE~ld 147 (353)
T PRK12755 123 GLRIARKLLLDLVELGLPLATEALD 147 (353)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEecC
Confidence 8999999988899999999876654
No 281
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=23.31 E-value=4.7e+02 Score=25.54 Aligned_cols=76 Identities=13% Similarity=0.110 Sum_probs=47.7
Q ss_pred EEEEEeeeccccccccCCCCCHHHHHHHHHHHHH----cCCCEEEEccccCCCCCccccCCCCCChHH-HHHHHHHHHHH
Q 014151 55 ALYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAK----MGLTVCRTWAFNDGGYNSLQISPGQFDERV-FKALDHVIVEA 129 (430)
Q Consensus 55 ~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~----~G~n~vR~~~~~~g~~~~~~~~pg~~de~~-l~~lD~~l~~A 129 (430)
.+.+.|-+.- .+++.+.+.-+.+|+ +|++.+|=-.|. ..-..+|..|.--+ -+.|+.+-+..
T Consensus 17 ~~lIAGPC~i---------Es~e~~~~~A~~lk~~~~~~g~~~i~kgsfk----KApRTSp~sFrG~G~eeGL~iL~~vk 83 (290)
T PLN03033 17 FFLLAGPNVI---------ESEEHILRMAKHIKDISTKLGLPLVFKSSFD----KANRTSSKSFRGPGMAEGLKILEKVK 83 (290)
T ss_pred eEEEecCChh---------cCHHHHHHHHHHHHHHHHhCCCcEEEEeecc----CCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 3456676632 145666666666666 499999974442 11134555554333 35566666778
Q ss_pred HHcCCEEEEeccCC
Q 014151 130 RKNGVRLLLSLVNN 143 (430)
Q Consensus 130 ~~~Gi~vil~l~~~ 143 (430)
++.|+.|+-++|+.
T Consensus 84 ~~~glpvvTeV~~~ 97 (290)
T PLN03033 84 VAYDLPIVTDVHES 97 (290)
T ss_pred HHHCCceEEeeCCH
Confidence 89999999988874
No 282
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.19 E-value=1.3e+02 Score=28.67 Aligned_cols=63 Identities=8% Similarity=0.054 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLL 138 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil 138 (430)
.+.+.+.++.+.++|+..|=+|+|+...|..-+.+-...=.-.-+.+....+...++||+|-+
T Consensus 44 ~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm~L~~~~l~~~~~~~~~~~iri~~ 106 (243)
T PRK14829 44 EPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLMGFSRDVIHRRREQMDEWGVRVRW 106 (243)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 467889999999999999999999754453211100000001112344445567788999854
No 283
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=23.15 E-value=1.4e+02 Score=28.75 Aligned_cols=61 Identities=10% Similarity=-0.025 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 80 GAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 80 ~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
+++++.+.+.|+..|+++.-... . -.+..-+.--+..++.....++.|+++|++|.+.+..
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd-~-~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~ 136 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASE-T-FSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVST 136 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCH-H-HHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 46788899999999998542210 0 0011111112678899999999999999999887653
No 284
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=23.08 E-value=1.6e+02 Score=28.63 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHH-cCCEEEEeccCCcccCCCc
Q 014151 119 FKALDHVIVEARK-NGVRLLLSLVNNLQAYGGK 150 (430)
Q Consensus 119 l~~lD~~l~~A~~-~Gi~vil~l~~~w~~~gg~ 150 (430)
.+.|..+.+.++. .|-.+.|+...+|+.|+|.
T Consensus 45 V~~l~~LAa~VR~ilG~~~kitYAADWsEY~~~ 77 (299)
T PF13547_consen 45 VEALRALAADVRAILGPGTKITYAADWSEYFGY 77 (299)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEeccCHHhcCc
Confidence 3445555555543 3667788888889888654
No 285
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=23.02 E-value=7.5e+02 Score=24.56 Aligned_cols=68 Identities=25% Similarity=0.316 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEcc-----------ccCCCCC------ccccCCCCCCh-HHHHHHHHHHHHHHHcCCE
Q 014151 74 YSRARVGAMLQAGAKMGLTVCRTWA-----------FNDGGYN------SLQISPGQFDE-RVFKALDHVIVEARKNGVR 135 (430)
Q Consensus 74 ~~~~~~~~~~~~~~~~G~n~vR~~~-----------~~~g~~~------~~~~~pg~~de-~~l~~lD~~l~~A~~~Gi~ 135 (430)
.+.+++++.++.+++.|+.+==+++ +.|..|. .+.-.+-.|++ +.|.....+|+..++.|++
T Consensus 21 ~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~k 100 (340)
T cd06597 21 DTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGVK 100 (340)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCCE
Confidence 3688999999999999987544432 1110110 00001112321 2344578999999999999
Q ss_pred EEEecc
Q 014151 136 LLLSLV 141 (430)
Q Consensus 136 vil~l~ 141 (430)
|++-.+
T Consensus 101 v~l~v~ 106 (340)
T cd06597 101 VLLWQI 106 (340)
T ss_pred EEEEec
Confidence 987443
No 286
>KOG1261 consensus Malate synthase [Energy production and conversion]
Probab=22.76 E-value=3.7e+02 Score=27.44 Aligned_cols=53 Identities=26% Similarity=0.401 Sum_probs=34.2
Q ss_pred cceeeeeccCCCccCCCCceEEcCCCccHHHHHHHHHHHHhhccccccccchhHhhh
Q 014151 372 GALIWQLFVEGMEEYNDDFGIVPWERTSTYKLLTEQSCGLGRISRLNLEKGNLKELC 428 (430)
Q Consensus 372 G~~~W~~~~~~~~~~~dg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (430)
-.-.|+|..++..=-+||-.|.. .-+.+++++...++...+|+. .|...+|-|
T Consensus 464 R~QlwQWv~hgv~L~~dG~~v~~---eL~~~~~~ee~er~~~~~g~~-~kN~~~eAa 516 (552)
T KOG1261|consen 464 RCQLWQWVKHGVKLEDDGRKVTP---ELTKKILAEETERLSKASGLG-VKNKFAEAA 516 (552)
T ss_pred HHHHHHHHhcCceecCCCCccCH---HHHHHHHHHHHHHHHhhcCcc-hhhhhHHHH
Confidence 34678998876532235554443 346689999999988888843 334566655
No 287
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.65 E-value=1.3e+02 Score=28.54 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCC---hHHHHHHHHHHHHHHHcCCEEEE
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFD---ERVFKALDHVIVEARKNGVRLLL 138 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~d---e~~l~~lD~~l~~A~~~Gi~vil 138 (430)
.+.+.+.++.+.++|++.|=+|+|+--.|.+ .+.+.+ .-..+.++..++...++|++|-+
T Consensus 34 ~~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R---~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~ 96 (233)
T PRK14833 34 VKTLREITIWCANHKLECLTLYAFSTENWKR---PKSEVDFLMKLLKKYLKDERSTYLENNIRFKA 96 (233)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecchhhcCc---CHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 4678999999999999999999998533532 111111 11123444455667778998854
No 288
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=22.55 E-value=2.1e+02 Score=26.40 Aligned_cols=43 Identities=7% Similarity=0.116 Sum_probs=32.9
Q ss_pred HHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014151 84 QAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSL 140 (430)
Q Consensus 84 ~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l 140 (430)
+.++++|++.+=+ .+++ .+|.|+. +.+-+..|.++||.+|++.
T Consensus 75 ~mLkd~G~~~vii-GHSE----------RRf~Etd---i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 75 EMLKDIGAKGTLI-NHSE----------RRMKLAD---IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHcCCCEEEE-Cccc----------CCCCccH---HHHHHHHHHHCCCEEEEEE
Confidence 3578999998877 3332 1256654 7888999999999999987
No 289
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=22.54 E-value=5.7e+02 Score=24.95 Aligned_cols=81 Identities=12% Similarity=0.159 Sum_probs=43.1
Q ss_pred CCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCCCCCCcccCccchhhccCcchhhccC
Q 014151 203 DPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKHLVTVGLEGFYGPKSPKRLTVNPEMWASALGSDFIRNSN 282 (430)
Q Consensus 203 ~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~w~~~~g~df~~~~~ 282 (430)
.|.|+.=.+.+=|+......+..-..|-=++-...|+.+|+.+.=+|..=-.|....+ =..-..++.
T Consensus 172 ~pdV~nHNvETVprL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~E-------------v~e~m~DLr 238 (306)
T COG0320 172 GPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGLGETDEE-------------VIEVMDDLR 238 (306)
T ss_pred CcchhhcccccchhcccccCCCCcHHHHHHHHHHHHHhCCCcccccceeeecCCcHHH-------------HHHHHHHHH
Confidence 5666666666666654332222223344456677888998766544331001211100 011234456
Q ss_pred CCCcceEEeeecCC
Q 014151 283 NDNIDFASVHIYPD 296 (430)
Q Consensus 283 ~~~iD~~s~H~Y~~ 296 (430)
...+|++++=.|-.
T Consensus 239 ~~gvdilTiGQYlq 252 (306)
T COG0320 239 SAGVDILTIGQYLQ 252 (306)
T ss_pred HcCCCEEEeccccC
Confidence 67899999998854
No 290
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=22.51 E-value=1.5e+02 Score=28.62 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014151 81 AMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSL 140 (430)
Q Consensus 81 ~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l 140 (430)
+.++.+.+.|++.||+..-.. .. ..+...+.=-++.++.+.+.++.|+++|++|.++.
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~s-d~-~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ 139 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSW-DL-HVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDA 139 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCC-HH-HHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeE
Confidence 678889999999999843110 00 01111122236778999999999999999997753
No 291
>PRK09989 hypothetical protein; Provisional
Probab=21.96 E-value=6.6e+02 Score=23.46 Aligned_cols=91 Identities=8% Similarity=-0.011 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcc
Q 014151 117 RVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGIGISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTIT 196 (430)
Q Consensus 117 ~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~t 196 (430)
...+.++++++.|++.|.+.|..... |.. ......+..+...+.++.++..
T Consensus 82 ~~~~~l~~~i~~A~~lg~~~v~v~~g-~~~-----------------------~~~~~~~~~~~~~~~l~~l~~~----- 132 (258)
T PRK09989 82 EARADIDLALEYALALNCEQVHVMAG-VVP-----------------------AGEDAERYRAVFIDNLRYAADR----- 132 (258)
T ss_pred HHHHHHHHHHHHHHHhCcCEEEECcc-CCC-----------------------CCCCHHHHHHHHHHHHHHHHHH-----
Confidence 34566777888888888765542211 100 0011234556667777887776
Q ss_pred cccccCCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCC
Q 014151 197 GVEYRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDKKH 244 (430)
Q Consensus 197 g~~yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~ 244 (430)
.++....++.|-.|....... .+.. ..++...|+++++..
T Consensus 133 ---a~~~gv~l~lE~l~~~~~~~~----~~~~-~~~~~~ll~~v~~~~ 172 (258)
T PRK09989 133 ---FAPHGKRILVEALSPGVKPHY----LFSS-QYQALAIVEEVARDN 172 (258)
T ss_pred ---HHhcCCEEEEEeCCCCCCCCC----ccCC-HHHHHHHHHHcCCCC
Confidence 666666777787774221110 0101 245566778887554
No 292
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.66 E-value=1.6e+02 Score=28.14 Aligned_cols=60 Identities=15% Similarity=0.314 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCC---hHHHHHHHHHHHHHHHcCCEEEE
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFD---ERVFKALDHVIVEARKNGVRLLL 138 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~d---e~~l~~lD~~l~~A~~~Gi~vil 138 (430)
.+.+.+.++.+.++|++.|=+|+|+.-.|.+ .+.+.+ .-.-..++..++...++|++|-+
T Consensus 44 ~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R---~~~EV~~Lm~L~~~~l~~~~~~~~~~~iri~v 106 (249)
T PRK14834 44 VEALRRVVRAAGELGIGYLTLFAFSSENWSR---PASEVSDLFGLLRLFIRRDLAELHRNGVRVRV 106 (249)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEeccccCC---CHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 5678999999999999999999998533432 111111 01113444555667788998854
No 293
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=21.10 E-value=7.8e+02 Score=24.00 Aligned_cols=127 Identities=13% Similarity=0.157 Sum_probs=64.1
Q ss_pred HHHHHcCCCEEEEccccCCCCCccccCC-CCCChHHHHHHHHHHHHHHHcCCEEEEeccCCcccCCCcchhhhhhhhhCC
Q 014151 84 QAGAKMGLTVCRTWAFNDGGYNSLQISP-GQFDERVFKALDHVIVEARKNGVRLLLSLVNNLQAYGGKTQYVNWAWEEGI 162 (430)
Q Consensus 84 ~~~~~~G~n~vR~~~~~~g~~~~~~~~p-g~~de~~l~~lD~~l~~A~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~ 162 (430)
+.+++.|+++|=+ .|.... ..-.+.- |......-..+..-|..+++.|++|+|++ ||.. |
T Consensus 19 ~~~~~~g~~~v~l-AFi~~~-~~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~-------GG~~---------g- 79 (294)
T cd06543 19 TYAAATGVKAFTL-AFIVAS-GGCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSF-------GGAS---------G- 79 (294)
T ss_pred HHHHHcCCCEEEE-EEEEcC-CCCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEe-------cCCC---------C-
Confidence 4577889998886 332110 0000110 11110112334566889999999999976 3321 1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCcccccccCCCceeEEeecCCCCCCCCCChHHHHHHHHHHHHHHHhcCC
Q 014151 163 GISSSNDSFFFDPSIHKYFKHYVKTVLTRKNTITGVEYRNDPTIFAWELINEPRCMSDPSGDTLQDWIDEMSAFVKSIDK 242 (430)
Q Consensus 163 ~~~~~~~~f~~d~~~~~~~~~~~~~lv~R~n~~tg~~yk~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp 242 (430)
..|-.+...++.+.+.+..++.+ |.=+ -+=+++.+ |.. . +.+...+..+.+ +.+++.-|
T Consensus 80 ------~~~~~~~~~~~~~~~a~~~~i~~--------y~~d--giDfDiE~-~~~-~--d~~~~~~~~~al-~~Lq~~~p 138 (294)
T cd06543 80 ------TPLATSCTSADQLAAAYQKVIDA--------YGLT--HLDFDIEG-GAL-T--DTAAIDRRAQAL-ALLQKEYP 138 (294)
T ss_pred ------CccccCcccHHHHHHHHHHHHHH--------hCCC--eEEEeccC-Ccc-c--cchhHHHHHHHH-HHHHHHCC
Confidence 11222444566666666777777 6432 22244444 221 1 122333443333 44566668
Q ss_pred CCEEEEcc
Q 014151 243 KHLVTVGL 250 (430)
Q Consensus 243 ~~lV~~G~ 250 (430)
+..|++..
T Consensus 139 ~l~vs~Tl 146 (294)
T cd06543 139 DLKISFTL 146 (294)
T ss_pred CcEEEEec
Confidence 77777643
No 294
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=20.97 E-value=1.9e+02 Score=27.16 Aligned_cols=51 Identities=18% Similarity=0.303 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014151 75 SRARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLS 139 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~ 139 (430)
+...++..++.++++|+++|-+ ++|.- ++. .+..-++|+.|.+.|.+|...
T Consensus 88 ~~~kvdeyl~e~~~lGfe~iEI---S~G~i-~m~----------~eek~~lIe~a~d~Gf~vlsE 138 (258)
T COG1809 88 SQDKVDEYLNEAKELGFEAIEI---SNGTI-PMS----------TEEKCRLIERAVDEGFMVLSE 138 (258)
T ss_pred hcccHHHHHHHHHHcCccEEEe---cCCee-ecc----------hHHHHHHHHHHHhcccEEehh
Confidence 4567899999999999999998 66521 111 344568899999999998643
No 295
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=20.97 E-value=2.5e+02 Score=29.50 Aligned_cols=49 Identities=20% Similarity=0.337 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSL 140 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l 140 (430)
.+.++..++.+.+.|+..+|++.... + ++.+...++.|+++|+.|...+
T Consensus 94 dDvv~~fv~~A~~~Gvd~irif~~ln--------------d--~~n~~~~i~~ak~~G~~v~~~i 142 (467)
T PRK14041 94 DDVVELFVKKVAEYGLDIIRIFDALN--------------D--IRNLEKSIEVAKKHGAHVQGAI 142 (467)
T ss_pred chhhHHHHHHHHHCCcCEEEEEEeCC--------------H--HHHHHHHHHHHHHCCCEEEEEE
Confidence 56678889999999999999954311 1 5677888999999999887655
No 296
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.96 E-value=1.4e+02 Score=28.51 Aligned_cols=60 Identities=15% Similarity=0.315 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCC---hHHHHHHHHHHHHHHHcCCEEEE
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFD---ERVFKALDHVIVEARKNGVRLLL 138 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~d---e~~l~~lD~~l~~A~~~Gi~vil 138 (430)
.+.+++.++.+.++|+..|=+|+|+--.|.+ .+.+.+ .-.-+.+++.++...++|++|-+
T Consensus 48 ~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~R---p~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~ 110 (253)
T PRK14832 48 ARTLKELLRCCKDWGIKALTAYAFSTENWQR---PIEEVDFLMLLFERLLRRELAQMHREGVRISF 110 (253)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 4678999999999999999999998533532 111111 01123344556667788999854
No 297
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=20.46 E-value=2.5e+02 Score=26.42 Aligned_cols=50 Identities=8% Similarity=0.089 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 78 RVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 78 ~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
..++.++.+++.|++.|=++... + +..+.++++++.|+++||++++.++.
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dlp------~---------e~~~~~~~~~~~~~~~Gl~~~~~v~p 138 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDLL------I---------DYPDDLEKYVEIIKNKGLKPVFFTSP 138 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCCC------C---------CcHHHHHHHHHHHHHcCCCEEEEECC
Confidence 35567888899999988773210 0 11345778999999999999998753
No 298
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=20.44 E-value=1.6e+02 Score=28.62 Aligned_cols=59 Identities=15% Similarity=0.049 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCcc-ccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecc
Q 014151 80 GAMLQAGAKMGLTVCRTWAFNDGGYNSL-QISPGQFDERVFKALDHVIVEARKNGVRLLLSLV 141 (430)
Q Consensus 80 ~~~~~~~~~~G~n~vR~~~~~~g~~~~~-~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~ 141 (430)
.++++.+.+.|++.|-++.-. .+.+ +..-+.=-++.++.+.++++.|+++|++|.+++.
T Consensus 77 ~~die~A~~~g~~~v~i~~s~---S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~e 136 (279)
T cd07947 77 KEDLKLVKEMGLKETGILMSV---SDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLE 136 (279)
T ss_pred HHHHHHHHHcCcCEEEEEEcC---CHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 467788888999988874321 1111 1111222378899999999999999999988774
No 299
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.40 E-value=1.5e+02 Score=28.33 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLL 138 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil 138 (430)
.+.+.+.++.+.++|+..|=+|+|+...|.+-+.+-...=.-.-..++..++...++|++|-+
T Consensus 52 ~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~iri~v 114 (251)
T PRK14830 52 MDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMNLPVEFLDKFVPELIENNVKVNV 114 (251)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 467899999999999999999999753343211110000001123455666667788998854
No 300
>PF08793 2C_adapt: 2-cysteine adaptor domain; InterPro: IPR014901 The virus-specific 2-cysteine adaptor is found fused to OTU/A20-like peptidases and S/T protein kinases. The associations to these proteins indicate that they might function as viral adaptors connecting the kinases and OTU/A20 peptidases to specific targets [].
Probab=20.40 E-value=51 Score=21.64 Aligned_cols=12 Identities=33% Similarity=0.437 Sum_probs=10.1
Q ss_pred cCCcccccccCC
Q 014151 192 KNTITGVEYRND 203 (430)
Q Consensus 192 ~n~~tg~~yk~~ 203 (430)
+||+||++.+-.
T Consensus 12 ~NP~Tgr~Ik~~ 23 (37)
T PF08793_consen 12 VNPITGRKIKPG 23 (37)
T ss_pred CCCCCCCcCCCC
Confidence 799999988754
No 301
>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=20.38 E-value=5.3e+02 Score=26.15 Aligned_cols=52 Identities=27% Similarity=0.310 Sum_probs=32.4
Q ss_pred EEEEeeeccccccccCCCCCHHHHHHHHHHHHHcCCCE--EEEccccCCCCCccccCCCC
Q 014151 56 LYVNGWNSYWLMDHAVHDYSRARVGAMLQAGAKMGLTV--CRTWAFNDGGYNSLQISPGQ 113 (430)
Q Consensus 56 ~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~--vR~~~~~~g~~~~~~~~pg~ 113 (430)
+..+|.|-||-.-. ++++-..-+.+++.|+.- |=+++..|...++..|.||.
T Consensus 49 VLVAGSngyyNYRH------QADvcHAYqiLrkgGikeEnIvv~MYDDIA~~~~NPrpG~ 102 (477)
T KOG1348|consen 49 VLVAGSNGYYNYRH------QADVCHAYQILRKGGIKEENIVVMMYDDIANNEENPRPGV 102 (477)
T ss_pred EEEecCCcccchhh------hhhHHHHHHHHHhcCCCchhEEEEEehhhhcCCCCCCCce
Confidence 45679997764322 456667778899999863 33345555445555666663
No 302
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=20.28 E-value=1.9e+02 Score=28.73 Aligned_cols=54 Identities=7% Similarity=0.126 Sum_probs=41.4
Q ss_pred HHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 83 LQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 83 ~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
.++++++|.+.+-+-+..+ +- ++-..++.....+.++.++|+++||..+|.+..
T Consensus 112 ~~rike~GadavK~Llyy~----pD--~~~ein~~k~a~vervg~ec~a~dipf~lE~lt 165 (325)
T TIGR01232 112 AKRLKEQGANAVKFLLYYD----VD--DAEEINIQKKAYIERIGSECVAEDIPFFLEVLT 165 (325)
T ss_pred HHHHHHhCCCeEEEEEEeC----CC--CChHHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 5668999999999966532 11 122355677889999999999999999998764
No 303
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.27 E-value=1.5e+02 Score=29.08 Aligned_cols=63 Identities=14% Similarity=0.084 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 014151 76 RARVGAMLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLL 138 (430)
Q Consensus 76 ~~~~~~~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil 138 (430)
.+.+.+.++.+.++|+..|=+|+|+-..|..-+.+-...=.-.-+.+.+..+...++||+|-+
T Consensus 97 ~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~irir~ 159 (296)
T PRK14827 97 EAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDNLNKMGVRIRW 159 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 467889999999999999999999754453211000000001123344445667888999854
No 304
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=20.19 E-value=1.9e+02 Score=28.79 Aligned_cols=55 Identities=9% Similarity=0.174 Sum_probs=41.9
Q ss_pred HHHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 82 MLQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 82 ~~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
..++++++|.+.+-+-+..+. .++-..++.....+.++.++|++.||..++.+..
T Consensus 112 s~~rike~GadavK~Llyy~p------D~~~ein~~k~a~vervg~eC~a~dipf~lE~l~ 166 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYDV------DGDEEINDQKQAYIERIGSECTAEDIPFFLELLT 166 (329)
T ss_pred hHHHHHHhCCCeEEEEEEECC------CCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 456789999999998665321 1122345677889999999999999999998764
No 305
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=20.17 E-value=1.8e+02 Score=28.03 Aligned_cols=53 Identities=8% Similarity=0.131 Sum_probs=42.1
Q ss_pred HHHHHHcCCCEEEEccccCCCCCccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEeccC
Q 014151 83 LQAGAKMGLTVCRTWAFNDGGYNSLQISPGQFDERVFKALDHVIVEARKNGVRLLLSLVN 142 (430)
Q Consensus 83 ~~~~~~~G~n~vR~~~~~~g~~~~~~~~pg~~de~~l~~lD~~l~~A~~~Gi~vil~l~~ 142 (430)
-+++|+.|.+.+.+.++.+. .+| +.++..+..+.++...|.++||-.++.+..
T Consensus 117 a~riK~~G~~avK~Lvy~~~------D~~-e~neqk~a~ierigsec~aedi~f~lE~lt 169 (306)
T COG3684 117 AKRIKEDGGDAVKFLVYYRS------DED-EINEQKLAYIERIGSECHAEDLPFFLEPLT 169 (306)
T ss_pred HHHHHHhcccceEEEEEEcC------Cch-HHhHHHHHHHHHHHHHhhhcCCceeEeeee
Confidence 45689999999999766331 123 567888999999999999999999987654
No 306
>PRK10040 hypothetical protein; Provisional
Probab=20.15 E-value=1.5e+02 Score=20.74 Aligned_cols=34 Identities=24% Similarity=0.224 Sum_probs=20.6
Q ss_pred HHHHHhhCCccccCCCC-CCCCcEEEeCCeEEE-CC
Q 014151 20 AFIYMSFGGLNVSYPKE-PEMGFVTRNGTHFML-DG 53 (430)
Q Consensus 20 ~~~~~~~~~~~~~~~~~-~~~gfv~~~g~~f~~-~G 53 (430)
++.+.++-..+.++|-+ .+.|.-+.+|++|+- ||
T Consensus 6 l~~l~~~~a~a~n~PCSG~KGGis~C~g~~FvCnDG 41 (52)
T PRK10040 6 LGTLVSFYADAGNKPCSGKKGGISHCTGGKFVCNDG 41 (52)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCcccccCCEEEeCCC
Confidence 44444553444556633 456677778999997 44
Done!