Query 014152
Match_columns 430
No_of_seqs 202 out of 1401
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 02:20:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2662 Magnesium transporters 100.0 4.4E-82 9.5E-87 632.1 32.1 325 1-430 87-413 (414)
2 COG0598 CorA Mg2+ and Co2+ tra 99.9 1.9E-25 4.1E-30 224.8 25.8 227 34-429 96-322 (322)
3 TIGR00383 corA magnesium Mg(2+ 99.9 6.1E-25 1.3E-29 219.7 27.2 184 141-429 134-318 (318)
4 PRK09546 zntB zinc transporter 99.9 2.1E-24 4.6E-29 217.1 28.0 224 35-429 101-324 (324)
5 PRK11085 magnesium/nickel/coba 99.9 3.4E-22 7.3E-27 200.5 23.7 101 319-429 216-316 (316)
6 PF01544 CorA: CorA-like Mg2+ 99.9 6.7E-21 1.4E-25 186.3 22.8 222 37-425 70-292 (292)
7 PF07332 DUF1469: Protein of u 90.9 2.8 6.1E-05 36.0 10.1 55 332-387 8-62 (121)
8 PRK11085 magnesium/nickel/coba 89.1 28 0.00061 35.5 20.8 33 34-69 88-120 (316)
9 PF01544 CorA: CorA-like Mg2+ 87.8 27 0.00059 33.7 16.6 59 326-384 194-253 (292)
10 PF10267 Tmemb_cc2: Predicted 86.5 47 0.001 35.0 22.3 28 354-381 336-364 (395)
11 PF02656 DUF202: Domain of unk 83.4 8.5 0.00018 30.1 7.9 21 408-428 53-73 (73)
12 PF11286 DUF3087: Protein of u 81.3 4.2 9.2E-05 37.6 6.2 56 362-429 21-76 (165)
13 TIGR02230 ATPase_gene1 F0F1-AT 76.5 17 0.00037 30.9 8.0 54 365-425 45-98 (100)
14 PF03904 DUF334: Domain of unk 76.1 71 0.0015 31.1 12.9 15 365-379 154-168 (230)
15 KOG3850 Predicted membrane pro 73.2 1.3E+02 0.0028 31.7 21.5 18 310-327 346-363 (455)
16 PF10272 Tmpp129: Putative tra 62.2 14 0.00031 38.3 5.4 45 343-387 17-61 (358)
17 PF07798 DUF1640: Protein of u 62.1 1.3E+02 0.0029 27.7 17.9 31 347-382 143-173 (177)
18 PF10805 DUF2730: Protein of u 61.3 54 0.0012 27.9 8.0 51 160-210 46-100 (106)
19 PRK15348 type III secretion sy 58.1 14 0.00031 36.4 4.4 57 370-426 189-248 (249)
20 COG3462 Predicted membrane pro 57.8 71 0.0015 27.7 7.9 60 353-414 3-62 (117)
21 PF05591 DUF770: Protein of un 57.7 22 0.00047 32.7 5.2 41 179-219 109-152 (157)
22 PRK09546 zntB zinc transporter 56.3 2.3E+02 0.0049 28.6 18.7 95 320-428 221-320 (324)
23 KOG3684 Ca2+-activated K+ chan 54.3 1E+02 0.0022 33.1 10.1 44 176-219 383-426 (489)
24 PRK14584 hmsS hemin storage sy 54.2 52 0.0011 30.2 7.0 28 360-388 16-43 (153)
25 TIGR03358 VI_chp_5 type VI sec 53.3 22 0.00047 32.8 4.5 41 179-219 110-153 (159)
26 TIGR02132 phaR_Bmeg polyhydrox 53.2 83 0.0018 29.6 8.2 59 146-209 76-134 (189)
27 TIGR02976 phageshock_pspB phag 53.2 30 0.00066 27.9 4.8 35 175-213 35-69 (75)
28 COG1196 Smc Chromosome segrega 51.9 5E+02 0.011 31.2 16.8 6 378-383 514-519 (1163)
29 PF05478 Prominin: Prominin; 51.8 4.3E+02 0.0093 30.4 19.0 19 370-388 428-446 (806)
30 PF13273 DUF4064: Protein of u 51.3 27 0.00059 29.0 4.5 27 361-387 4-30 (100)
31 PF11712 Vma12: Endoplasmic re 50.0 86 0.0019 27.9 7.8 8 313-320 22-29 (142)
32 PF06667 PspB: Phage shock pro 49.9 37 0.0008 27.4 4.8 36 174-213 34-69 (75)
33 PF06570 DUF1129: Protein of u 49.5 1.3E+02 0.0028 28.4 9.3 19 311-329 23-41 (206)
34 COG5570 Uncharacterized small 48.6 1.1E+02 0.0023 23.2 6.6 51 147-202 3-53 (57)
35 PF04129 Vps52: Vps52 / Sac2 f 48.4 1.1E+02 0.0024 33.2 9.7 69 312-387 30-98 (508)
36 PF11026 DUF2721: Protein of u 47.6 2E+02 0.0043 25.3 12.8 71 316-386 13-93 (130)
37 PF06570 DUF1129: Protein of u 47.5 52 0.0011 31.1 6.3 30 354-387 142-171 (206)
38 PF02439 Adeno_E3_CR2: Adenovi 47.1 43 0.00093 23.6 4.1 21 407-427 11-32 (38)
39 KOG4343 bZIP transcription fac 46.6 55 0.0012 35.7 6.8 75 311-390 303-382 (655)
40 PF04156 IncA: IncA protein; 46.2 38 0.00082 31.3 5.1 19 365-383 7-25 (191)
41 PF10112 Halogen_Hydrol: 5-bro 45.1 36 0.00078 31.9 4.8 20 366-385 11-30 (199)
42 PF07106 TBPIP: Tat binding pr 44.9 2.4E+02 0.0052 25.6 10.2 63 137-203 71-137 (169)
43 PF01102 Glycophorin_A: Glycop 44.8 38 0.00083 29.9 4.5 12 398-409 64-75 (122)
44 PF07889 DUF1664: Protein of u 44.6 1.4E+02 0.003 26.5 8.0 30 147-176 41-70 (126)
45 PF06210 DUF1003: Protein of u 44.2 57 0.0012 28.1 5.4 34 367-405 3-39 (108)
46 PTZ00370 STEVOR; Provisional 42.8 80 0.0017 31.9 6.9 15 200-214 110-124 (296)
47 TIGR01478 STEVOR variant surfa 42.2 82 0.0018 31.8 6.8 14 201-214 112-125 (295)
48 PF11368 DUF3169: Protein of u 41.7 59 0.0013 31.6 5.9 28 354-384 4-31 (248)
49 PRK13182 racA polar chromosome 41.7 1.3E+02 0.0028 28.1 7.8 59 149-207 85-143 (175)
50 PF06196 DUF997: Protein of un 41.0 1.9E+02 0.0042 23.5 7.8 28 362-389 6-33 (80)
51 PF06645 SPC12: Microsomal sig 40.7 25 0.00054 28.3 2.5 24 365-388 13-36 (76)
52 PF10003 DUF2244: Integral mem 40.5 62 0.0014 28.8 5.3 28 400-427 34-61 (140)
53 PRK08456 flagellar motor prote 39.9 53 0.0011 32.4 5.2 43 365-413 4-48 (257)
54 KOG4603 TBP-1 interacting prot 39.5 1.9E+02 0.004 27.3 8.2 66 145-210 82-151 (201)
55 KOG4643 Uncharacterized coiled 39.2 1.3E+02 0.0028 35.4 8.5 64 145-221 173-236 (1195)
56 PF13042 DUF3902: Protein of u 38.8 71 0.0015 29.2 5.3 43 343-388 49-92 (161)
57 PF11177 DUF2964: Protein of u 38.2 1.2E+02 0.0025 23.7 5.7 26 363-388 8-33 (62)
58 PF10856 DUF2678: Protein of u 37.9 21 0.00045 31.2 1.8 21 362-382 31-51 (118)
59 PF05884 ZYG-11_interact: Inte 37.1 2.8E+02 0.006 28.2 9.7 52 367-425 107-158 (299)
60 PHA03231 glycoprotein BALF4; P 36.5 2.1E+02 0.0045 33.2 9.7 18 326-343 632-649 (829)
61 PRK09458 pspB phage shock prot 36.1 83 0.0018 25.5 4.8 35 175-213 35-69 (75)
62 TIGR01834 PHA_synth_III_E poly 35.5 2.2E+02 0.0048 29.3 8.9 51 160-210 267-317 (320)
63 COG5487 Small integral membran 35.4 1.7E+02 0.0038 21.9 5.9 17 368-384 4-20 (54)
64 PF02060 ISK_Channel: Slow vol 34.8 53 0.0011 29.2 3.8 54 374-427 13-70 (129)
65 PF11945 WASH_WAHD: WAHD domai 34.7 1.9E+02 0.0042 29.3 8.4 48 160-215 29-76 (297)
66 PF10754 DUF2569: Protein of u 34.7 69 0.0015 28.8 4.7 12 418-429 73-84 (149)
67 PF14015 DUF4231: Protein of u 34.6 2.6E+02 0.0057 23.1 8.7 7 379-385 39-45 (112)
68 KOG1830 Wiskott Aldrich syndro 34.4 54 0.0012 34.8 4.4 82 142-224 25-106 (518)
69 PF04504 DUF573: Protein of un 34.4 72 0.0016 26.8 4.5 57 139-195 12-69 (98)
70 PF14712 Snapin_Pallidin: Snap 34.2 2.5E+02 0.0054 22.7 7.9 29 180-208 62-90 (92)
71 TIGR00807 malonate_madL malona 34.1 75 0.0016 28.0 4.5 52 365-430 6-57 (125)
72 PRK02935 hypothetical protein; 34.1 3.1E+02 0.0067 23.7 8.3 22 352-373 6-27 (110)
73 PF06103 DUF948: Bacterial pro 33.7 2.5E+02 0.0055 22.6 8.0 18 155-172 32-49 (90)
74 COG3516 Predicted component of 33.6 58 0.0013 30.2 4.0 40 179-218 115-157 (169)
75 PF08173 YbgT_YccB: Membrane b 33.0 83 0.0018 20.7 3.5 19 399-417 2-20 (28)
76 PRK12911 bifunctional preprote 32.8 1.6E+02 0.0034 35.9 8.2 42 335-383 1315-1361(1403)
77 PF07889 DUF1664: Protein of u 32.8 2.7E+02 0.0057 24.7 7.9 61 148-208 53-115 (126)
78 PF10577 UPF0560: Uncharacteri 32.6 23 0.0005 40.3 1.5 30 399-428 272-302 (807)
79 PF11023 DUF2614: Protein of u 32.6 2.4E+02 0.0051 24.7 7.3 23 352-374 5-27 (114)
80 PTZ00382 Variant-specific surf 32.6 8.8 0.00019 32.3 -1.4 8 419-426 87-94 (96)
81 PF04611 AalphaY_MDB: Mating t 32.1 3.8E+02 0.0082 24.1 8.9 61 134-202 59-119 (147)
82 TIGR01167 LPXTG_anchor LPXTG-m 31.6 50 0.0011 21.7 2.5 9 418-426 24-32 (34)
83 KOG3176 Predicted alpha-helica 30.6 1.7E+02 0.0037 28.4 6.7 77 129-213 38-114 (223)
84 PRK06926 flagellar motor prote 30.3 53 0.0011 32.8 3.5 43 365-413 7-53 (271)
85 PRK10517 magnesium-transportin 30.3 1.6E+02 0.0035 34.3 7.9 44 376-428 858-901 (902)
86 PRK09110 flagellar motor prote 30.2 51 0.0011 33.1 3.4 43 365-413 2-46 (283)
87 PF04799 Fzo_mitofusin: fzo-li 30.1 3.8E+02 0.0082 25.1 8.8 35 134-168 105-139 (171)
88 PF12263 DUF3611: Protein of u 29.9 1.7E+02 0.0038 27.5 6.7 17 361-377 24-40 (183)
89 PF07439 DUF1515: Protein of u 29.8 3.7E+02 0.0081 23.3 8.4 63 144-208 3-66 (112)
90 PF03408 Foamy_virus_ENV: Foam 29.7 1E+02 0.0022 35.3 5.8 60 325-384 861-939 (981)
91 TIGR02106 cyd_oper_ybgT cyd op 29.6 1E+02 0.0022 20.6 3.6 17 399-415 2-18 (30)
92 PRK14756 hypothetical protein; 29.4 45 0.00097 21.9 1.8 19 362-380 4-22 (29)
93 PF11970 Git3_C: G protein-cou 29.4 1.7E+02 0.0036 23.6 5.6 66 356-428 8-74 (76)
94 cd07912 Tweety_N N-terminal do 29.3 4.1E+02 0.0089 28.3 10.0 16 413-428 221-236 (418)
95 PF11348 DUF3150: Protein of u 29.1 2.4E+02 0.0051 27.9 7.8 53 159-211 174-232 (257)
96 PRK10884 SH3 domain-containing 28.6 5.3E+02 0.011 24.7 10.3 22 187-208 91-112 (206)
97 TIGR03141 cytochro_ccmD heme e 28.5 85 0.0018 22.5 3.4 11 418-428 23-33 (45)
98 PF10157 DUF2365: Uncharacteri 28.5 4.6E+02 0.0099 23.9 9.2 72 148-219 51-129 (149)
99 PF11044 TMEMspv1-c74-12: Plec 28.3 1.3E+02 0.0027 22.0 4.1 24 403-426 7-30 (49)
100 COG2733 Predicted membrane pro 28.1 2.3E+02 0.005 30.0 7.7 66 353-429 2-68 (415)
101 COG4267 Predicted membrane pro 28.0 3.3E+02 0.0071 29.0 8.7 67 350-427 325-392 (467)
102 COG3402 Uncharacterized conser 27.8 2.1E+02 0.0046 26.4 6.6 6 423-428 72-77 (161)
103 PF09990 DUF2231: Predicted me 27.8 2.2E+02 0.0048 23.6 6.4 25 363-387 6-30 (104)
104 PF04799 Fzo_mitofusin: fzo-li 27.7 5.1E+02 0.011 24.2 9.2 31 180-210 135-165 (171)
105 PRK11020 hypothetical protein; 27.6 2.9E+02 0.0063 24.2 7.0 74 155-228 4-78 (118)
106 PF01618 MotA_ExbB: MotA/TolQ/ 27.5 4.2E+02 0.0091 23.2 9.2 11 376-386 76-86 (139)
107 COG0598 CorA Mg2+ and Co2+ tra 27.5 6.5E+02 0.014 25.3 18.7 94 325-428 221-318 (322)
108 PF14316 DUF4381: Domain of un 27.3 96 0.0021 27.6 4.3 9 397-405 17-25 (146)
109 PF00335 Tetraspannin: Tetrasp 27.0 21 0.00046 32.2 0.0 19 365-383 9-27 (221)
110 PF12597 DUF3767: Protein of u 26.8 1.6E+02 0.0036 25.7 5.5 23 401-427 69-91 (118)
111 PF07086 DUF1352: Protein of u 26.7 2.8E+02 0.006 26.3 7.4 34 350-384 89-122 (186)
112 PF05597 Phasin: Poly(hydroxya 26.6 4.6E+02 0.01 23.3 8.7 65 144-208 60-128 (132)
113 PF11137 DUF2909: Protein of u 26.3 3.2E+02 0.0069 21.3 6.9 23 365-387 4-26 (63)
114 PF01031 Dynamin_M: Dynamin ce 26.3 1.7E+02 0.0037 28.9 6.4 81 130-212 184-269 (295)
115 PRK13021 secF preprotein trans 26.2 3.8E+02 0.0083 27.1 8.9 32 342-378 214-245 (297)
116 PF05974 DUF892: Domain of unk 26.2 4.5E+02 0.0098 23.7 8.6 56 156-213 11-66 (159)
117 PRK08124 flagellar motor prote 26.2 67 0.0015 31.8 3.4 43 365-413 4-48 (263)
118 PF04995 CcmD: Heme exporter p 25.9 1.2E+02 0.0026 21.8 3.8 27 401-428 6-32 (46)
119 COG1459 PulF Type II secretory 25.8 5.2E+02 0.011 27.2 10.1 26 365-390 176-201 (397)
120 PRK15122 magnesium-transportin 25.8 2E+02 0.0044 33.5 7.7 9 421-429 894-903 (903)
121 PRK14749 hypothetical protein; 25.6 1.8E+02 0.0039 19.4 4.1 22 399-420 2-23 (30)
122 PF13858 DUF4199: Protein of u 25.6 2.8E+02 0.006 24.6 7.1 26 362-387 3-28 (163)
123 PF12761 End3: Actin cytoskele 25.4 6E+02 0.013 24.3 10.8 21 153-173 100-120 (195)
124 KOG1853 LIS1-interacting prote 25.3 7E+02 0.015 25.0 15.0 74 141-214 44-123 (333)
125 PRK02870 heat shock protein Ht 25.2 2.6E+02 0.0056 28.8 7.5 19 365-383 29-47 (336)
126 PF08317 Spc7: Spc7 kinetochor 24.9 4.9E+02 0.011 26.4 9.5 6 63-68 79-84 (325)
127 PF05377 FlaC_arch: Flagella a 24.8 1.6E+02 0.0035 22.4 4.4 34 186-219 11-44 (55)
128 PF05478 Prominin: Prominin; 24.7 1.1E+03 0.024 27.1 20.4 25 187-211 265-289 (806)
129 PRK08990 flagellar motor prote 24.5 73 0.0016 31.5 3.3 43 365-413 4-47 (254)
130 PF11857 DUF3377: Domain of un 24.4 50 0.0011 26.6 1.7 26 402-427 33-58 (74)
131 PF10661 EssA: WXG100 protein 24.3 96 0.0021 28.1 3.8 28 401-428 117-144 (145)
132 PF10267 Tmemb_cc2: Predicted 24.3 8.7E+02 0.019 25.7 17.7 20 325-344 299-318 (395)
133 PRK07668 hypothetical protein; 24.2 7.1E+02 0.015 24.7 10.4 22 311-332 23-44 (254)
134 KOG2678 Predicted membrane pro 23.5 1E+02 0.0023 30.0 3.9 24 401-424 215-238 (244)
135 PF10083 DUF2321: Uncharacteri 23.4 5.5E+02 0.012 23.7 8.4 73 134-208 76-149 (158)
136 PF11346 DUF3149: Protein of u 23.3 1.7E+02 0.0038 21.0 4.1 19 408-426 18-36 (42)
137 PF04341 DUF485: Protein of un 23.2 4.2E+02 0.0091 21.7 8.4 22 351-375 10-31 (91)
138 PRK10573 type IV pilin biogene 23.1 7.8E+02 0.017 25.4 10.8 7 63-69 30-36 (399)
139 PF03817 MadL: Malonate transp 23.1 1.5E+02 0.0032 26.2 4.4 52 365-430 6-57 (125)
140 PRK09109 motC flagellar motor 23.0 84 0.0018 30.8 3.4 43 365-413 4-48 (246)
141 PF09583 Phageshock_PspG: Phag 23.0 82 0.0018 24.7 2.6 15 374-388 33-47 (65)
142 PF06703 SPC25: Microsomal sig 23.0 2.4E+02 0.0052 25.4 6.2 24 362-388 29-52 (162)
143 PF02388 FemAB: FemAB family; 22.9 4E+02 0.0086 27.9 8.6 58 148-207 241-298 (406)
144 TIGR01837 PHA_granule_1 poly(h 22.8 3.9E+02 0.0085 23.1 7.2 21 182-202 96-116 (118)
145 PF04012 PspA_IM30: PspA/IM30 22.8 6.4E+02 0.014 23.7 18.8 42 184-225 53-95 (221)
146 PF04906 Tweety: Tweety; Inte 22.7 3.3E+02 0.0071 28.7 7.9 28 402-429 186-214 (406)
147 PRK13682 hypothetical protein; 22.6 76 0.0016 23.8 2.2 17 368-384 4-20 (51)
148 COG5130 YIP3 Prenylated rab ac 22.5 3.2E+02 0.0069 25.0 6.5 18 369-386 82-99 (169)
149 PF04102 SlyX: SlyX; InterPro 22.5 2.1E+02 0.0046 22.3 4.9 17 184-200 34-50 (69)
150 PRK14726 bifunctional preprote 22.2 5.2E+02 0.011 30.2 9.9 16 364-379 777-792 (855)
151 PF00746 Gram_pos_anchor: Gram 22.2 29 0.00064 23.8 0.0 12 415-426 28-39 (39)
152 PF12805 FUSC-like: FUSC-like 22.0 3.1E+02 0.0067 27.0 7.2 18 371-388 49-66 (284)
153 TIGR03818 MotA1 flagellar moto 21.5 69 0.0015 32.2 2.4 43 365-413 2-46 (282)
154 PF01299 Lamp: Lysosome-associ 21.3 54 0.0012 33.0 1.7 28 399-426 271-298 (306)
155 PF14235 DUF4337: Domain of un 21.3 6.4E+02 0.014 23.0 9.8 38 312-349 68-105 (157)
156 PF14654 Epiglycanin_C: Mucin, 21.2 1.4E+02 0.0031 25.4 3.8 28 398-425 17-44 (106)
157 PRK11644 sensory histidine kin 21.1 2.8E+02 0.006 29.8 7.2 58 360-430 108-166 (495)
158 PF14584 DUF4446: Protein of u 21.0 2.1E+02 0.0046 26.0 5.3 42 309-350 38-79 (151)
159 PF02392 Ycf4: Ycf4; InterPro 20.5 2.2E+02 0.0048 26.8 5.4 24 364-388 24-47 (180)
160 smart00502 BBC B-Box C-termina 20.4 4.9E+02 0.011 21.4 9.0 37 180-216 73-109 (127)
161 PF06417 DUF1077: Protein of u 20.3 2.1E+02 0.0045 25.4 4.9 28 365-392 44-71 (124)
No 1
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-82 Score=632.09 Aligned_cols=325 Identities=57% Similarity=0.823 Sum_probs=283.6
Q ss_pred CccCCCCCCcccccCCCCCCCceeeecCCeEEeeccccchheecCeeeeecCCCCCchhHHHHHHHHHhccccccccccc
Q 014152 1 MRRTGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKSQIN 80 (430)
Q Consensus 1 ~r~~gL~~RDLR~ldp~~s~pssIl~R~~aIlVnle~iraII~~d~Vllf~~~~~~~~~f~~~L~~rL~~~~~~~~~~~~ 80 (430)
|+|+||+|||||++||+++||++|++||+|||+||||||||||+|+|++||+.++ |.++.+++++|+.........|..
T Consensus 87 ~~r~~L~aRDLR~ldp~~~~~ssIl~RE~aIVlNLe~IKAIItaeeVll~d~~~~-v~~~~~el~~~l~~~~~~~~~q~s 165 (414)
T KOG2662|consen 87 MKRVGLPARDLRKLDPSLSYPSSILGRENAIVLNLEHIKAIITADEVLLLDSLDP-VIPYNEELQRRLPVELESRGNQLS 165 (414)
T ss_pred HHHcCCChhhhhhccccccCccccccccceEEeehhhhheeeehhheeEeccccc-cchHHHHHHHHhcccccccccccC
Confidence 6899999999999999999999999999999999999999999999999999998 999999999999865332211100
Q ss_pred CCCCCccccccCCCCCCCCCCCCCCCCCCCCCccchhhhhhcccccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 014152 81 GEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFEDENEERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAKT 160 (430)
Q Consensus 81 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lPFEl~aLE~~L~~~~~~Le~e~~~ 160 (430)
+ +....+.+||||||||+||+.+|+.|++++.+
T Consensus 166 ~-----------------------------------------------~~~~~~~lPFEFrALE~aLe~~~s~L~~~~~~ 198 (414)
T KOG2662|consen 166 S-----------------------------------------------DGGSKDELPFEFRALEVALEAACSFLDSRLSE 198 (414)
T ss_pred C-----------------------------------------------CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01225789999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHhhhhhhHHHhhhhhcccCCCCCCCC
Q 014152 161 LEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTSSINERD 240 (430)
Q Consensus 161 Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~Dm~~m~Lt~~~~~~~~~~~~~~~~~~~ 240 (430)
||..++++||+|++++++.+|++||.+|++|++|.+|||+|||+|+++||||+||++||||+|+.+..+
T Consensus 199 Le~~~~~~LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mYLT~K~~~~~~----------- 267 (414)
T KOG2662|consen 199 LETEAYPLLDELTNKISTLNLERLRILKKRLTELTSRVQKVRDELEELLDDDDDMAEMYLTRKLAQASS----------- 267 (414)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHHhhhccc-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999865432
Q ss_pred ccchHHhhhhccccchhhhhhhhcCCCCCccccccccccccccccccccccccCCCCc--cccccccccCcccHHHHHHH
Q 014152 241 DMDDEVLQSNMNNRTTAEISLEATGGSTSYEADFQNTENIHDNLFTQNIHSRASHGTR--TSTTHSAISKHLDVEELEML 318 (430)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ee~E~L 318 (430)
.++++++++..+...+ +....+-.+.++|+||+|||
T Consensus 268 ------------------------------------------~~~~~~sp~~~~~~~r~~~~~~~s~~~~~dd~eElEML 305 (414)
T KOG2662|consen 268 ------------------------------------------PESAPTSPTIKAGISRAKSNRASSTVRGEDDVEELEML 305 (414)
T ss_pred ------------------------------------------cccCCCCccccCCccchhhcccchhccccccHHHHHHH
Confidence 1112222322222111 00111111338999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccccccCC
Q 014152 319 LEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGM 398 (430)
Q Consensus 319 LE~Y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMNl~~~~~~~~~~~~ 398 (430)
||+||+|+|++.+++++|+++|++|||+||++||++||++|+++|+||++|++++++++|+|+||||+++.+|+ ++
T Consensus 306 LEaYf~qiD~~~nk~~~Lre~IddTEd~InI~LDs~RN~LiqleL~Lt~gT~~~s~~~~va~ifGMNl~~~l~~----~~ 381 (414)
T KOG2662|consen 306 LEAYFMQIDSTLNKLESLREYIDDTEDIINIQLDSNRNELIQLELLLTIGTFCLSVFSVVAGIFGMNLPSSLEE----DH 381 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhcc----CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875 77
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q 014152 399 QEFLWTVGGGATGSIFLYVVAIAWCKHKRLLE 430 (430)
Q Consensus 399 ~~F~~v~~~~~~~~v~i~~~~~~yfkrk~wl~ 430 (430)
++|+|++++++++|+++|++.++|+|+||+++
T Consensus 382 ~~F~~vv~~~~~~~~~lf~~i~~~~k~krL~~ 413 (414)
T KOG2662|consen 382 YAFKWVVGITFTLCIVLFVVILGYAKLKRLLG 413 (414)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999999999999999999999875
No 2
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.9e-25 Score=224.84 Aligned_cols=227 Identities=20% Similarity=0.277 Sum_probs=179.4
Q ss_pred eccccchheecCeeeeecCCCCCchhHHHHHHHHHhcccccccccccCCCCCccccccCCCCCCCCCCCCCCCCCCCCCc
Q 014152 34 NLEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKSQINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFE 113 (430)
Q Consensus 34 nle~iraII~~d~Vllf~~~~~~~~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 113 (430)
..+++..+++.+.++.+...+. +.+..++.|+......
T Consensus 96 ~~~~v~~i~~~~~liT~r~~~~---~~~~~vr~r~~~~~~~--------------------------------------- 133 (322)
T COG0598 96 ETEPVSIIVGKRRLITIRHRPL---PAFDRVRERLEKGTLL--------------------------------------- 133 (322)
T ss_pred cceeEEEEEeCCEEEEEecCCC---ccHHHHHHHHhccccc---------------------------------------
Confidence 4678899999999999987443 5567788887642000
Q ss_pred cchhhhhhcccccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHH
Q 014152 114 DENEERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVA 193 (430)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~ 193 (430)
......+-| .+||.+.+.....|+ .++.....+.+.+..+-+...++++..+++.+..
T Consensus 134 ----------------~~~~~~l~~--~lld~i~d~~~~~le----~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~ 191 (322)
T COG0598 134 ----------------TRGADELLY--ALLDAIVDNYFPVLE----QIEDELEAIEDQLLASTTNEELERLGELRRSLVY 191 (322)
T ss_pred ----------------cCCHHHHHH--HHHHHHHHhhHHHHH----HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 011122222 455555555555555 8999999999999887777999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCchhHhhhhhhHHHhhhhhcccCCCCCCCCccchHHhhhhccccchhhhhhhhcCCCCCcccc
Q 014152 194 ITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTSSINERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEAD 273 (430)
Q Consensus 194 l~~rv~~vr~~l~~lLddD~Dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (430)
+.+-+.+.++++..++.++.+ .+.
T Consensus 192 lr~~l~~~~~~l~~l~~~~~~----~~~---------------------------------------------------- 215 (322)
T COG0598 192 LRRALAPLRDVLLRLARRPLD----WLS---------------------------------------------------- 215 (322)
T ss_pred HHHHHHhHHHHHHHHHhcCcc----cCC----------------------------------------------------
Confidence 999999999999999987655 111
Q ss_pred ccccccccccccccccccccCCCCccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhH
Q 014152 274 FQNTENIHDNLFTQNIHSRASHGTRTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDD 353 (430)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~E~LLE~Y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld~ 353 (430)
++....++.-+.++.++.+.++.+++.+..+.|.+...+++
T Consensus 216 ---------------------------------------~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~ 256 (322)
T COG0598 216 ---------------------------------------EEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINN 256 (322)
T ss_pred ---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12224445555678889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Q 014152 354 KQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRLL 429 (430)
Q Consensus 354 ~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMNl~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~~~~yfkrk~wl 429 (430)
++|++||+ ||++|++|+|+|+|||+|||||+++|+ .+|++|||++.+++++ +++++++||||||||
T Consensus 257 ~~N~imk~---LTi~s~iflPpTlIagiyGMNf~~mPe---l~~~~Gy~~~l~~m~~----~~~~~~~~frrk~Wl 322 (322)
T COG0598 257 NQNEIMKI---LTIVSTIFLPPTLITGFYGMNFKGMPE---LDWPYGYPIALILMLL----LALLLYLYFRRKGWL 322 (322)
T ss_pred HHHHHHHH---HHHHHHHHHhhHHHHcccccCCCCCcC---CCCcccHHHHHHHHHH----HHHHHHHHHHhcCcC
Confidence 99999999 999999999999999999999999886 4699999997765554 445789999999997
No 3
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=99.94 E-value=6.1e-25 Score=219.68 Aligned_cols=184 Identities=20% Similarity=0.246 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hHhhhh
Q 014152 141 VALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDE-DMAEMY 219 (430)
Q Consensus 141 ~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~-Dm~~m~ 219 (430)
.+|-.+++.++..+..-++.++.++..+.+.+.++.....++++..+|+.+..+.+-+...+++++.+...+. . .
T Consensus 134 ~ll~~il~~ivd~~~~~l~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~----~ 209 (318)
T TIGR00383 134 YLLYDIFDAIIDSYFPLLENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLP----I 209 (318)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc----c
Confidence 4666677777777777777999999999888877767789999999999999999999999999999876432 1 0
Q ss_pred hhHHHhhhhhcccCCCCCCCCccchHHhhhhccccchhhhhhhhcCCCCCccccccccccccccccccccccccCCCCcc
Q 014152 220 LTEKLMQQLENSSTSSINERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEADFQNTENIHDNLFTQNIHSRASHGTRT 299 (430)
Q Consensus 220 Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (430)
++
T Consensus 210 ~~------------------------------------------------------------------------------ 211 (318)
T TIGR00383 210 QT------------------------------------------------------------------------------ 211 (318)
T ss_pred CC------------------------------------------------------------------------------
Confidence 00
Q ss_pred ccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 300 STTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVA 379 (430)
Q Consensus 300 ~~~~~~~~~~~~~ee~E~LLE~Y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIa 379 (430)
++....+..-..+++.+.+.++.+++.++.+.|.+...+++++|++||+ ||++|++|+|+|+||
T Consensus 212 -------------~~~~~~~~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s~~~N~~mk~---LTvvt~IflP~t~Ia 275 (318)
T TIGR00383 212 -------------EEVREYLRDIYDHILSLLEMIETYRELLSSLMDLYLSLVNNKMNEIMKI---LTVVSTIFIPLTFIA 275 (318)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 1111223333446788888999999999999999999999999999999 999999999999999
Q ss_pred hhccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Q 014152 380 GIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRLL 429 (430)
Q Consensus 380 GiFGMNl~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~~~~yfkrk~wl 429 (430)
|+|||||+++|+. +|++||++++++++++ ++++++||||||||
T Consensus 276 GiyGMNf~~mP~l---~~~~gy~~~l~~m~~i----~~~~~~~fkrk~Wl 318 (318)
T TIGR00383 276 GIYGMNFKFMPEL---NWKYGYPAVLIVMAVI----ALGPLIYFRRKGWL 318 (318)
T ss_pred HHHhCCcccCccc---cchhHHHHHHHHHHHH----HHHHHHHHHHcCCC
Confidence 9999999999874 6889999877765544 45789999999997
No 4
>PRK09546 zntB zinc transporter; Reviewed
Probab=99.94 E-value=2.1e-24 Score=217.13 Aligned_cols=224 Identities=13% Similarity=0.088 Sum_probs=166.8
Q ss_pred ccccchheecCeeeeecCCCCCchhHHHHHHHHHhcccccccccccCCCCCccccccCCCCCCCCCCCCCCCCCCCCCcc
Q 014152 35 LEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKSQINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFED 114 (430)
Q Consensus 35 le~iraII~~d~Vllf~~~~~~~~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 114 (430)
..++..+++.+.++.+...+. ++++++++++..+..
T Consensus 101 ~~~l~~~l~~~~lITv~~~~~---~~~~~~~~~~~~~~~----------------------------------------- 136 (324)
T PRK09546 101 LVAMRVYITDRLIVSTRHRKV---LALDDVVSDLQEGTG----------------------------------------- 136 (324)
T ss_pred eEEEEEEEeCCEEEEEecCCc---ccHHHHHHHHHhCCC-----------------------------------------
Confidence 345788999999999976543 577888888763200
Q ss_pred chhhhhhcccccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHH
Q 014152 115 ENEERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAI 194 (430)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l 194 (430)
... |. .+|-.+++.++..+..-+..++..+..+.+.+.++-++ .++++..+|+.+..+
T Consensus 137 ---------------~~~----~~--~ll~~lld~ivd~~~~~l~~i~~~ld~lE~~l~~~~~~-~~~~l~~lrr~l~~l 194 (324)
T PRK09546 137 ---------------PTD----CG--GWLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQQIP-PRGELALLRKQLIVM 194 (324)
T ss_pred ---------------CCC----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHHH
Confidence 000 22 24445666666666666668888888888877544222 467999999999999
Q ss_pred HHHHHHHHHHHHHHhcCchhHhhhhhhHHHhhhhhcccCCCCCCCCccchHHhhhhccccchhhhhhhhcCCCCCccccc
Q 014152 195 TGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTSSINERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEADF 274 (430)
Q Consensus 195 ~~rv~~vr~~l~~lLddD~Dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (430)
++-+.+.++++.++...+.. .+++.
T Consensus 195 rr~l~p~~~~l~~L~~~~~~----~~~~~--------------------------------------------------- 219 (324)
T PRK09546 195 RRYMAPQRDVFARLASERLP----WMSDD--------------------------------------------------- 219 (324)
T ss_pred HHHHHHHHHHHHHHHhcCCc----ccChH---------------------------------------------------
Confidence 99999999999998864321 11111
Q ss_pred cccccccccccccccccccCCCCccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHH
Q 014152 275 QNTENIHDNLFTQNIHSRASHGTRTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDK 354 (430)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~E~LLE~Y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld~~ 354 (430)
....++....++..+.+.++.+++.+..+.+.+...++++
T Consensus 220 ----------------------------------------~~~~l~Dv~d~~~~~~~~l~~~~~~~~~l~d~~~s~~s~~ 259 (324)
T PRK09546 220 ----------------------------------------DRRRMQDIADRLGRGLDDLDACIARTAVLADEIASVMAEA 259 (324)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112223333566667788888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Q 014152 355 QNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRLL 429 (430)
Q Consensus 355 rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMNl~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~~~~yfkrk~wl 429 (430)
+|++||+ ||++|++|.|+|+|||+|||||+++||. +|++|||+++++++ ++++++++||||||||
T Consensus 260 ~N~~m~~---Ltilt~IflPlT~IaGiyGMNf~~mPel---~~~~gy~~~l~im~----~i~~~~~~~fkrk~Wl 324 (324)
T PRK09546 260 MNRRTYT---MSLMAMVFLPTTFLTGLFGVNLGGIPGG---GWPFGFSIFCLLLV----VLIGGVAWWLKRSKWL 324 (324)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHhhhccccCCCCCc---CCcchHHHHHHHHH----HHHHHHHHHHHhcccC
Confidence 9999999 9999999999999999999999999874 68999988766554 4455789999999997
No 5
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=99.90 E-value=3.4e-22 Score=200.54 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccccccCC
Q 014152 319 LEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGM 398 (430)
Q Consensus 319 LE~Y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMNl~~~~~~~~~~~~ 398 (430)
+..++++++.+...++.+++.+..+.|.+...+++++|++||+ ||++|++|+|+|+|||+|||||+++|+ .+|+
T Consensus 216 ~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~~~~N~~mk~---lTv~s~if~pptliagiyGMNf~~mP~---~~~~ 289 (316)
T PRK11085 216 AREILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKI---FSVVSVVFLPPTLVASSYGMNFEFMPE---LKWS 289 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHhhcccccCCCCC---CCCc
Confidence 3588899999999999999999999999999999999999999 999999999999999999999998886 4688
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Q 014152 399 QEFLWTVGGGATGSIFLYVVAIAWCKHKRLL 429 (430)
Q Consensus 399 ~~F~~v~~~~~~~~v~i~~~~~~yfkrk~wl 429 (430)
+|||++++++++ +++++++|||||+||
T Consensus 290 ~g~~~~l~~~~~----~~~~~~~~f~rk~Wl 316 (316)
T PRK11085 290 FGYPGAIILMIL----AGLAPYLYFKRKNWL 316 (316)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHcccC
Confidence 888887765554 344789999999997
No 6
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=99.88 E-value=6.7e-21 Score=186.28 Aligned_cols=222 Identities=21% Similarity=0.313 Sum_probs=171.2
Q ss_pred ccchheecCeeeeecCCCCCchhHHHHHHHHHhcccccccccccCCCCCccccccCCCCCCCCCCCCCCCCCCCCCccch
Q 014152 37 HIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKSQINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFEDEN 116 (430)
Q Consensus 37 ~iraII~~d~Vllf~~~~~~~~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 116 (430)
++..+++.+.++.+...+. ++++++..++....
T Consensus 70 ~l~~~~~~~~lit~~~~~~---~~~~~~~~~~~~~~-------------------------------------------- 102 (292)
T PF01544_consen 70 PLSFILGDNFLITVHRDPL---PFIDELRERLESRN-------------------------------------------- 102 (292)
T ss_dssp EEEEEEETTEEEEEESSSS---HCHHHHHHHHHSTT--------------------------------------------
T ss_pred eEEEEEecceEEEEECCCC---hHHHHHHHHhhccC--------------------------------------------
Confidence 6789999999999997663 67788888886100
Q ss_pred hhhhhcccccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHH
Q 014152 117 EERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITG 196 (430)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~ 196 (430)
....-|+ .++..+++.++..+...+..++..+..+.+.+.+......+.++..+|+.+..+.+
T Consensus 103 ---------------~~~~~~~--~ll~~il~~~~~~~~~~l~~l~~~l~~le~~~~~~~~~~~~~~l~~l~~~l~~l~~ 165 (292)
T PF01544_consen 103 ---------------ERPSSPE--DLLYAILDEIVDDYFEVLEELEDELDELEDELDDRPSNELLRELFDLRRELSRLRR 165 (292)
T ss_dssp ---------------CSCSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHTTTHHHCCHHHHHHHHHHHHHH
T ss_pred ---------------CCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 0111144 78999999999999999999999999999999777888899999999999999999
Q ss_pred HHHHHHHHHHHHhc-CchhHhhhhhhHHHhhhhhcccCCCCCCCCccchHHhhhhccccchhhhhhhhcCCCCCcccccc
Q 014152 197 RVQKVRDELEHLLD-DDEDMAEMYLTEKLMQQLENSSTSSINERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEADFQ 275 (430)
Q Consensus 197 rv~~vr~~l~~lLd-dD~Dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (430)
.+...++++.+++. ++.. ..
T Consensus 166 ~l~~~~~~l~~~~~~~~~~----~~------------------------------------------------------- 186 (292)
T PF01544_consen 166 SLSPLREVLQRLLRRDDSP----FI------------------------------------------------------- 186 (292)
T ss_dssp HHHHHHHHHHHHHHCCCST----TS-------------------------------------------------------
T ss_pred HhhhHHHHHHHHHHhhhhh----hh-------------------------------------------------------
Confidence 99999999987766 1111 00
Q ss_pred ccccccccccccccccccCCCCccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHH
Q 014152 276 NTENIHDNLFTQNIHSRASHGTRTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQ 355 (430)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~E~LLE~Y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld~~r 355 (430)
.++....++....++..+.+.++.+++.++++.+.+...+++++
T Consensus 187 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (292)
T PF01544_consen 187 ------------------------------------SDEDKEYLRDLLDRIERLLERAESLRERLESLQDLYQSKLSNRQ 230 (292)
T ss_dssp ------------------------------------HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ------------------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01112335666778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 356 NHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKH 425 (430)
Q Consensus 356 N~lmk~~l~LTi~t~i~~~~tlIaGiFGMNl~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~~~~yfkr 425 (430)
|++||+ ||++|++|.|+|+|||+|||||.++|+. +++++|++++ ++++++++++++++||||
T Consensus 231 n~~m~~---LT~~t~iflPlt~i~g~fGMN~~~~p~~---~~~~g~~~~~--~~~~~~~~~~~~~~~~kR 292 (292)
T PF01544_consen 231 NRVMKV---LTIVTAIFLPLTFITGIFGMNFKGMPEL---DWPYGYFFVI--ILGLMILVAILLYWWFKR 292 (292)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHTTSTTS-SS---SS---SSSS-SHHH----HHHHHHHHHHHHCCTTS
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHhhCCccCCCcc---CCccHHHHHH--HHHHHHHHHHHHHHheeC
Confidence 999999 9999999999999999999999988763 4666555542 344555666677888875
No 7
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=90.88 E-value=2.8 Score=36.01 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 014152 332 KLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIN 387 (430)
Q Consensus 332 ~l~~l~e~i~~ted~i~~~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMNl~ 387 (430)
-.+.+.+.+++--++....+..+..+..+. +.+.+++.+++..+++...++..+-
T Consensus 8 l~~~~~~lv~~~i~La~~E~~~~~~~~~~~-~~~~~~a~vl~~~~l~~l~~al~~~ 62 (121)
T PF07332_consen 8 LVDDLSTLVRTRIELAKAELREKARRLGRG-LALLVLAAVLALLALLFLLVALVFA 62 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666677777777777776653 4555666666666666666555543
No 8
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=89.14 E-value=28 Score=35.47 Aligned_cols=33 Identities=12% Similarity=0.161 Sum_probs=24.1
Q ss_pred eccccchheecCeeeeecCCCCCchhHHHHHHHHHh
Q 014152 34 NLEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRIL 69 (430)
Q Consensus 34 nle~iraII~~d~Vllf~~~~~~~~~f~~~L~~rL~ 69 (430)
..+.|..|++.+.++.+...++ +.+..+++|++
T Consensus 88 ~~~~v~fil~~~~LvTvr~~~~---~~f~~~~~r~~ 120 (316)
T PRK11085 88 GNSTVAFTIRDGRLFTLREREL---PAFRLYRMRAR 120 (316)
T ss_pred cceeEEEEEECCEEEEEecCCc---chHHHHHHHHH
Confidence 3456777888888888887766 45677777775
No 9
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=87.82 E-value=27 Score=33.74 Aligned_cols=59 Identities=19% Similarity=0.301 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccc
Q 014152 326 IDGTLNKLSTLREYVDDTEDYINIMLDDKQNHL-LQMGVMLTTATLVVSAFVVVAGIFGM 384 (430)
Q Consensus 326 id~i~~~l~~l~e~i~~ted~i~~~Ld~~rN~l-mk~~l~LTi~t~i~~~~tlIaGiFGM 384 (430)
+..+.++++.+.+.++.+.+.+....+...|.+ .+.+-.+..+|++.+++.-++=+-|.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~n~~m~~LT~~t~iflPlt~i~g~ 253 (292)
T PF01544_consen 194 LRDLLDRIERLLERAESLRERLESLQDLYQSKLSNRQNRVMKVLTIVTAIFLPLTFITGI 253 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777777776665544432 12222355555555555333444443
No 10
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=86.50 E-value=47 Score=35.04 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=18.9
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Q 014152 354 KQNHLLQM-GVMLTTATLVVSAFVVVAGI 381 (430)
Q Consensus 354 ~rN~lmk~-~l~LTi~t~i~~~~tlIaGi 381 (430)
.|--+.++ ++.|+++++++.+.+.++++
T Consensus 336 ~r~~l~k~inllL~l~~vlLv~vSt~~~~ 364 (395)
T PF10267_consen 336 ARALLGKLINLLLTLLTVLLVFVSTVANC 364 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444444 77888888888877777664
No 11
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=83.36 E-value=8.5 Score=30.12 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCc
Q 014152 408 GATGSIFLYVVAIAWCKHKRL 428 (430)
Q Consensus 408 ~~~~~v~i~~~~~~yfkrk~w 428 (430)
++++.++++.+.+-|++++||
T Consensus 53 ~~~~~~~~~~~~~ry~~~~~~ 73 (73)
T PF02656_consen 53 IVLGLLTLIYGIYRYRRRRRW 73 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 334445556678889999998
No 12
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=81.28 E-value=4.2 Score=37.59 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Q 014152 362 GVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRLL 429 (430)
Q Consensus 362 ~l~LTi~t~i~~~~tlIaGiFGMNl~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~~~~yfkrk~wl 429 (430)
-+..+.+.++++.+++...+|| .+ +..-|+|=.+|+++++++. ++++..+|.+.|+
T Consensus 21 ~~v~~lai~sl~~s~llI~lFg----~~-------~~~nf~~NllGVil~~~~~-~~~l~~~k~~p~m 76 (165)
T PF11286_consen 21 ACVASLAILSLAFSQLLIALFG----GE-------SGGNFHWNLLGVILGLLLT-SALLRQLKTHPFM 76 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC----CC-------CCCceeeeHHHHHHHHHHH-HHHHHHHccChHH
Confidence 3456666677778888999999 21 2233777666665555444 4455588888875
No 13
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=76.47 E-value=17 Score=30.92 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 365 LTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKH 425 (430)
Q Consensus 365 LTi~t~i~~~~tlIaGiFGMNl~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~~~~yfkr 425 (430)
++++...+.++++++.+.|.=++.- | +..++|.+.+.+++.++-+..++.|.+|
T Consensus 45 ~g~IG~~~v~pil~G~~lG~WLD~~-~------~t~~~~tl~~lllGv~~G~~n~w~wi~r 98 (100)
T TIGR02230 45 FGLIGWSVAIPTLLGVAVGIWLDRH-Y------PSPFSWTLTMLIVGVVIGCLNAWHWVSR 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-c------CCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999988753 2 2234555544444444444445555444
No 14
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=76.11 E-value=71 Score=31.12 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 014152 365 LTTATLVVSAFVVVA 379 (430)
Q Consensus 365 LTi~t~i~~~~tlIa 379 (430)
++.+-++|+.+++|.
T Consensus 154 i~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 154 IGAMLFVFMLFALVM 168 (230)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555544
No 15
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=73.23 E-value=1.3e+02 Score=31.71 Aligned_cols=18 Identities=17% Similarity=0.243 Sum_probs=11.2
Q ss_pred ccHHHHHHHHHHHHHHHH
Q 014152 310 LDVEELEMLLEAYFVQID 327 (430)
Q Consensus 310 ~~~ee~E~LLE~Y~~~id 327 (430)
+...+++..+|.+.-++.
T Consensus 346 ERaRdIqEalEscqtris 363 (455)
T KOG3850|consen 346 ERARDIQEALESCQTRIS 363 (455)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344567777777766553
No 16
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=62.16 E-value=14 Score=38.31 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=31.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 014152 343 TEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIN 387 (430)
Q Consensus 343 ted~i~~~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMNl~ 387 (430)
.++++...|.+.....+..-++-|++++.+-..-..+=+.||++-
T Consensus 17 v~~lfs~~LgsE~~~FV~YHikRT~~tllvHs~LPlgY~~~~~~~ 61 (358)
T PF10272_consen 17 VQNLFSSWLGSEDYDFVQYHIKRTSATLLVHSCLPLGYFIGMCFF 61 (358)
T ss_pred HHHHHHHhhCccccchHHHHHhHhHHHHHHHHHHHHHHHhheeEe
Confidence 345566667777777777777777777777766666667788874
No 17
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=62.14 E-value=1.3e+02 Score=27.73 Aligned_cols=31 Identities=10% Similarity=0.219 Sum_probs=17.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014152 347 INIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIF 382 (430)
Q Consensus 347 i~~~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIaGiF 382 (430)
+...+.+.++.++|. ++.++++.++++.|+|
T Consensus 143 lr~~iE~~K~~~lr~-----~~g~i~~~~a~~la~~ 173 (177)
T PF07798_consen 143 LRTEIESLKWDTLRW-----LVGVIFGCVALVLAIL 173 (177)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 344455677888876 2344455555555554
No 18
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=61.30 E-value=54 Score=27.94 Aligned_cols=51 Identities=18% Similarity=0.313 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhccCChhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014152 160 TLEQEAHPALDKLTSKISTLNLER----VRQIKSRLVAITGRVQKVRDELEHLLD 210 (430)
Q Consensus 160 ~Le~~~~~~Ld~L~~~vs~~~Ler----lr~lK~~L~~l~~rv~~vr~~l~~lLd 210 (430)
..+.+...+...+..-.+...+.+ +-.++.++..+..+++++....+-||+
T Consensus 46 ~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 46 EHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433 234445555555555555444444443
No 19
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=58.08 E-value=14 Score=36.45 Aligned_cols=57 Identities=5% Similarity=-0.144 Sum_probs=25.6
Q ss_pred HHHHHHHHHH-hhccccCCCcccccccc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 014152 370 LVVSAFVVVA-GIFGMNINIELFDEHKS--GMQEFLWTVGGGATGSIFLYVVAIAWCKHK 426 (430)
Q Consensus 370 ~i~~~~tlIa-GiFGMNl~~~~~~~~~~--~~~~F~~v~~~~~~~~v~i~~~~~~yfkrk 426 (430)
.-+++++.-. -|+|||+.+.+-.--.+ -.++||.+.++++++.+++.++.++|.+||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (249)
T PRK15348 189 FRMVADVPARQTFWIMDVINANKGKVVKWLMKYPYQLMLSLTGLLLGVGILIGYFCLRRR 248 (249)
T ss_pred cccCCCCccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334443333 38999998753110000 113344454444433334444445554544
No 20
>COG3462 Predicted membrane protein [Function unknown]
Probab=57.81 E-value=71 Score=27.71 Aligned_cols=60 Identities=7% Similarity=0.049 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccccccCCchHHHHHHHHHHHHHH
Q 014152 353 DKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIF 414 (430)
Q Consensus 353 ~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMNl~~~~~~~~~~~~~~F~~v~~~~~~~~v~ 414 (430)
.+-|++.-+ .+.+++++..++-.-.|+||=-+-++++-.--..-++.|.+..++++..++
T Consensus 3 k~ven~~w~--ligliavi~~v~li~~~~~gg~~y~~gy~gm~GG~yGm~lImpI~~~vvli 62 (117)
T COG3462 3 KKVENFAWL--LIGLIAVIAVVGLIPSGFHGGAFYPGGYRGMMGGLYGMWLIMPIFWAVVLI 62 (117)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHhhcccccCcccCCCccccccchhhhHHHHHHHHHHHHH
Confidence 344555433 355566665555555566662221111100001235566666555554443
No 21
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=57.67 E-value=22 Score=32.71 Aligned_cols=41 Identities=20% Similarity=0.446 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCchhHhhhh
Q 014152 179 LNLERVRQIKSRLVAITGRVQ---KVRDELEHLLDDDEDMAEMY 219 (430)
Q Consensus 179 ~~Lerlr~lK~~L~~l~~rv~---~vr~~l~~lLddD~Dm~~m~ 219 (430)
..|.+|..++++|..|.+.+. .+|+.|+++|.|++.+..+.
T Consensus 109 p~L~~LlelR~~L~~L~~~l~~~~~~r~~l~~~l~~~~~~~~l~ 152 (157)
T PF05591_consen 109 PELRKLLELREQLRDLKGPLDNNPAFRKLLQEILSDPEALEKLK 152 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHCCHHHHHHHH
Confidence 357788888899988888875 49999999999999876553
No 22
>PRK09546 zntB zinc transporter; Reviewed
Probab=56.28 E-value=2.3e+02 Score=28.56 Aligned_cols=95 Identities=13% Similarity=0.119 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcc-cccc
Q 014152 320 EAYFVQIDGTLNKLSTLREYVDDTED----YINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIEL-FDEH 394 (430)
Q Consensus 320 E~Y~~~id~i~~~l~~l~e~i~~ted----~i~~~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMNl~~~~-~~~~ 394 (430)
..|++++ .+++..+.+.++...+ +.+...+...|++-+. +-++|++-+++.-.+=+-|. +|+ |.
T Consensus 221 ~~~l~Dv---~d~~~~~~~~l~~~~~~~~~l~d~~~s~~s~~~N~~---m~~Ltilt~IflPlT~IaGi---yGMNf~-- 289 (324)
T PRK09546 221 RRRMQDI---ADRLGRGLDDLDACIARTAVLADEIASVMAEAMNRR---TYTMSLMAMVFLPTTFLTGL---FGVNLG-- 289 (324)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh---hccccC--
Confidence 4555554 4444444455555544 3344445555665554 77888888888877888887 332 32
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 014152 395 KSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRL 428 (430)
Q Consensus 395 ~~~~~~F~~v~~~~~~~~v~i~~~~~~yfkrk~w 428 (430)
+.+...|-+| .++++++++++.+..+.+=|+
T Consensus 290 --~mPel~~~~g-y~~~l~im~~i~~~~~~~fkr 320 (324)
T PRK09546 290 --GIPGGGWPFG-FSIFCLLLVVLIGGVAWWLKR 320 (324)
T ss_pred --CCCCcCCcch-HHHHHHHHHHHHHHHHHHHHh
Confidence 4555555554 344556766667766665444
No 23
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=54.31 E-value=1e+02 Score=33.11 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=34.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHhhhh
Q 014152 176 ISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMY 219 (430)
Q Consensus 176 vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~Dm~~m~ 219 (430)
+++.+-.|||.+++++..--...++||-...++.|+..++-+|-
T Consensus 383 ~~k~~~~rlR~hQRkfL~AI~~fR~Vk~~qRkl~e~~nsl~d~a 426 (489)
T KOG3684|consen 383 VSKGDQARLRKHQRKFLQAIHQFRSVKWEQRKLSEQANSLVDLA 426 (489)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHH
Confidence 35667778999998887777778899999999999877755443
No 24
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=54.21 E-value=52 Score=30.19 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 014152 360 QMGVMLTTATLVVSAFVVVAGIFGMNINI 388 (430)
Q Consensus 360 k~~l~LTi~t~i~~~~tlIaGiFGMNl~~ 388 (430)
-++..||+++=+..+.-++.|+.+| +.+
T Consensus 16 liD~~lT~~aW~gfi~l~~~~~~~~-~~~ 43 (153)
T PRK14584 16 LIDIILTALAWFGFLFLLVRGLLEM-ISR 43 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence 3567789888888888899999999 543
No 25
>TIGR03358 VI_chp_5 type VI secretion protein, VC_A0107 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=53.26 E-value=22 Score=32.80 Aligned_cols=41 Identities=20% Similarity=0.426 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCchhHhhhh
Q 014152 179 LNLERVRQIKSRLVAITGRVQ---KVRDELEHLLDDDEDMAEMY 219 (430)
Q Consensus 179 ~~Lerlr~lK~~L~~l~~rv~---~vr~~l~~lLddD~Dm~~m~ 219 (430)
..|.+|..+|++|..|.+.+. .+|+.|+++|.|++.+..+.
T Consensus 110 p~L~~LlelR~~L~~L~~~l~~~~~~~~~l~~~l~d~~~~~~L~ 153 (159)
T TIGR03358 110 PELKKLLEAREALRDLKGPLDNNPDLRKLLQELLKDKDLLEKLL 153 (159)
T ss_pred HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHCCHHHHHHHH
Confidence 457788888999999988874 59999999999988876543
No 26
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=53.23 E-value=83 Score=29.59 Aligned_cols=59 Identities=15% Similarity=0.290 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014152 146 CLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLL 209 (430)
Q Consensus 146 ~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lL 209 (430)
-+......||.++..||......-|.+. ..+|.-+.+|++++.+++|+..+-+-++++|
T Consensus 76 rvA~lvinlE~kvD~lee~fdd~~d~l~-----~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L 134 (189)
T TIGR02132 76 NVASLVINLEEKVDLIEEFFDDKFDELE-----AQQEQAPALKKDVTKLKQDIKSLDKKLDKIL 134 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhCchHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667777777666666655554 2233334445555555555544444444443
No 27
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=53.21 E-value=30 Score=27.88 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=28.1
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 014152 175 KISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDE 213 (430)
Q Consensus 175 ~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~ 213 (430)
..+....++|.++-.+..+++.||+ +||++||+|+
T Consensus 35 ~ls~~d~~~L~~L~~~a~rm~eRI~----tLE~ILd~e~ 69 (75)
T TIGR02976 35 SLSTDDQALLQELYAKADRLEERID----TLERILDAEH 69 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHcCCC
Confidence 3566777788888888888888886 7899998875
No 28
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=51.87 E-value=5e+02 Score=31.23 Aligned_cols=6 Identities=33% Similarity=1.304 Sum_probs=4.1
Q ss_pred HHhhcc
Q 014152 378 VAGIFG 383 (430)
Q Consensus 378 IaGiFG 383 (430)
+.|+||
T Consensus 514 ~~Gv~G 519 (1163)
T COG1196 514 LPGVYG 519 (1163)
T ss_pred CCCccc
Confidence 667777
No 29
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=51.76 E-value=4.3e+02 Score=30.44 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhccccCCC
Q 014152 370 LVVSAFVVVAGIFGMNINI 388 (430)
Q Consensus 370 ~i~~~~tlIaGiFGMNl~~ 388 (430)
+++...+++.|++|-.=..
T Consensus 428 v~~~~lGLl~G~~G~~~~~ 446 (806)
T PF05478_consen 428 VLCLLLGLLCGCCGYRRRA 446 (806)
T ss_pred HHHHHHHHHHhhccCCCCC
Confidence 3455578889999965443
No 30
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=51.28 E-value=27 Score=28.99 Aligned_cols=27 Identities=7% Similarity=-0.057 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCC
Q 014152 361 MGVMLTTATLVVSAFVVVAGIFGMNIN 387 (430)
Q Consensus 361 ~~l~LTi~t~i~~~~tlIaGiFGMNl~ 387 (430)
.|..|+++..++.....+.+++...+.
T Consensus 4 ~E~iL~~Ig~il~il~~~~~l~~~~~~ 30 (100)
T PF13273_consen 4 AEKILGWIGGILGILFGFFGLLIGFFG 30 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456688888777766555555544443
No 31
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=49.99 E-value=86 Score=27.93 Aligned_cols=8 Identities=50% Similarity=0.542 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 014152 313 EELEMLLE 320 (430)
Q Consensus 313 ee~E~LLE 320 (430)
.|++.++|
T Consensus 22 ~E~~a~le 29 (142)
T PF11712_consen 22 PELKARLE 29 (142)
T ss_pred HHHHHHHH
Confidence 34444443
No 32
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=49.89 E-value=37 Score=27.43 Aligned_cols=36 Identities=19% Similarity=0.410 Sum_probs=28.9
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 014152 174 SKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDE 213 (430)
Q Consensus 174 ~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~ 213 (430)
...+....++|.++-.+..+++.||+ +||.+||.|.
T Consensus 34 ~gLs~~d~~~L~~L~~~a~rm~eRI~----tLE~ILdae~ 69 (75)
T PF06667_consen 34 QGLSEEDEQRLQELYEQAERMEERIE----TLERILDAEH 69 (75)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHcCCC
Confidence 44677788888888888888888887 6888998765
No 33
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=49.47 E-value=1.3e+02 Score=28.41 Aligned_cols=19 Identities=32% Similarity=0.371 Sum_probs=11.5
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q 014152 311 DVEELEMLLEAYFVQIDGT 329 (430)
Q Consensus 311 ~~ee~E~LLE~Y~~~id~i 329 (430)
+.++.|.+|+.-..|+-+-
T Consensus 23 ~e~~~e~~L~eil~~Llea 41 (206)
T PF06570_consen 23 SEEEIEELLEEILPHLLEA 41 (206)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3456777777666665443
No 34
>COG5570 Uncharacterized small protein [Function unknown]
Probab=48.62 E-value=1.1e+02 Score=23.20 Aligned_cols=51 Identities=25% Similarity=0.440 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 014152 147 LEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVR 202 (430)
Q Consensus 147 L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr 202 (430)
+++-...|+.+-..||.+++.++ ...+.+.+ .++.+|+|=.+++..+.+++
T Consensus 3 ieshl~eL~kkHg~le~ei~ea~----n~Ps~dd~-~i~eLKRrKL~lKeeIEkLk 53 (57)
T COG5570 3 IESHLAELEKKHGNLEREIQEAM----NSPSSDDL-AIRELKRRKLRLKEEIEKLK 53 (57)
T ss_pred HHHHHHHHHHhhchHHHHHHHHh----cCCCcchH-HHHHHHHHHHHHHHHHHHHh
Confidence 34445566666667776666543 44444555 36777776666555555544
No 35
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=48.39 E-value=1.1e+02 Score=33.16 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 014152 312 VEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIN 387 (430)
Q Consensus 312 ~ee~E~LLE~Y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMNl~ 387 (430)
.+.+|..|..|..++..+...+..|++.-.. ++..|.|++.-.-++ =.++.-++.||.+|-.|--=++.
T Consensus 30 L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~----l~~~L~Nrk~~~~~L---~~~i~~i~ipP~lI~~I~~~~v~ 98 (508)
T PF04129_consen 30 LESLEEMLSNFQNDLGSISSEIRSLQERSSS----LNVKLKNRKAVEEKL---SPFIDDIVIPPDLIRSICEGPVN 98 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHH---HHHHHHHcCCHHHHHhHhcCCCC
Confidence 4668889999999999999999888875444 477788888888777 78888889999999999876664
No 36
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=47.65 E-value=2e+02 Score=25.33 Aligned_cols=71 Identities=13% Similarity=0.351 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhcccc
Q 014152 316 EMLLEAYFVQIDGTLNKLSTLREYVDDTED------YINIMLDDKQNHLLQMGVMLTTATLVVSAFVV----VAGIFGMN 385 (430)
Q Consensus 316 E~LLE~Y~~~id~i~~~l~~l~e~i~~ted------~i~~~Ld~~rN~lmk~~l~LTi~t~i~~~~tl----IaGiFGMN 385 (430)
-.++-.|-.+...+.+++..+.+..++..+ .-++..=.+|=++++--+.+...++++...+. +.+++++|
T Consensus 13 g~ll~~~tnRl~ri~dR~R~L~~~~~~~~~~~~~~~~~el~~L~rR~~li~~ai~~~~~s~ll~~l~i~~lf~~~~~~~~ 92 (130)
T PF11026_consen 13 GLLLLVLTNRLARIVDRIRQLHDELRDAPDEEERRLRRELRILRRRARLIRRAITLATLSALLVCLVILLLFLSALLSID 92 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 356677888888888888888776654211 12222334666666666666666665554443 34555555
Q ss_pred C
Q 014152 386 I 386 (430)
Q Consensus 386 l 386 (430)
+
T Consensus 93 ~ 93 (130)
T PF11026_consen 93 L 93 (130)
T ss_pred h
Confidence 4
No 37
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=47.48 E-value=52 Score=31.11 Aligned_cols=30 Identities=10% Similarity=0.236 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 014152 354 KQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIN 387 (430)
Q Consensus 354 ~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMNl~ 387 (430)
+|....+. +.++.+++.+..++..+..+ ++
T Consensus 142 ~r~~~~k~---~~~~~~~~~~w~~~~~~~~~-lp 171 (206)
T PF06570_consen 142 KRPSWWKY---ILISVLAMVLWIVIFVLTSF-LP 171 (206)
T ss_pred cccHHHHH---HHHHHHHHHHHHHHHHHHHH-cc
Confidence 34344444 44444444444444455555 44
No 38
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=47.15 E-value=43 Score=23.58 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHcC
Q 014152 407 GGATGSIFLYVVAIAW-CKHKR 427 (430)
Q Consensus 407 ~~~~~~v~i~~~~~~y-fkrk~ 427 (430)
+.+++++++.+.++.| |.+||
T Consensus 11 ~V~vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 11 AVVVGMAIIIICMFYYACCYKK 32 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 3334444444444444 55554
No 39
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=46.55 E-value=55 Score=35.69 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cc
Q 014152 311 DVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYI-NIML--DDKQNHLLQMGVMLTTATLVVSAFVVVAGIFG--MN 385 (430)
Q Consensus 311 ~~ee~E~LLE~Y~~~id~i~~~l~~l~e~i~~ted~i-~~~L--d~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFG--MN 385 (430)
-.+-+|+-|.+.+++.+.+-..=.+|+.+|+..+.-- ...+ -..||+-- .-.+..++.+.+||.-.|| ||
T Consensus 303 y~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvpsp~~~~qKk-----~Rkvvaimv~maFi~f~~~~p~n 377 (655)
T KOG4343|consen 303 YMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPSPKGRNQKK-----KRKVVAIMVVMAFIIFNYGSPMN 377 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCCCccccccc-----chhhhhHHHHHHHHHHhccCccc
Confidence 3455778888888888888877788887776553310 0011 12333221 2234555566677788888 99
Q ss_pred CCCcc
Q 014152 386 INIEL 390 (430)
Q Consensus 386 l~~~~ 390 (430)
+.+.+
T Consensus 378 i~nnl 382 (655)
T KOG4343|consen 378 ILNNL 382 (655)
T ss_pred ccCCc
Confidence 88765
No 40
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=46.20 E-value=38 Score=31.28 Aligned_cols=19 Identities=11% Similarity=0.454 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 014152 365 LTTATLVVSAFVVVAGIFG 383 (430)
Q Consensus 365 LTi~t~i~~~~tlIaGiFG 383 (430)
++++.+++++.-+++|+-|
T Consensus 7 ~~i~~iilgilli~~gI~~ 25 (191)
T PF04156_consen 7 ISIILIILGILLIASGIAA 25 (191)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555
No 41
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=45.12 E-value=36 Score=31.89 Aligned_cols=20 Identities=15% Similarity=0.428 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 014152 366 TTATLVVSAFVVVAGIFGMN 385 (430)
Q Consensus 366 Ti~t~i~~~~tlIaGiFGMN 385 (430)
+++++.++..++++++||.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~ 30 (199)
T PF10112_consen 11 WILGVLIAAITFLVSFFGFD 30 (199)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45666666667777777654
No 42
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=44.89 E-value=2.4e+02 Score=25.59 Aligned_cols=63 Identities=21% Similarity=0.351 Sum_probs=45.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhccCChhhHH-HHHHHHHHHHHHHHHHHHHHH
Q 014152 137 PFEFVALEACLEAACSCLENEAKTLEQEAHPALD---KLTSKISTLNLE-RVRQIKSRLVAITGRVQKVRD 203 (430)
Q Consensus 137 PFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld---~L~~~vs~~~Le-rlr~lK~~L~~l~~rv~~vr~ 203 (430)
|=|+..|+.= +..|..++..|+..+..+.. .|.+..++..|. .+-.++..+..+..|+..++.
T Consensus 71 ~eel~~ld~e----i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAE----IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555544 66677777777777776644 455677777775 577899999999999999887
No 43
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=44.79 E-value=38 Score=29.86 Aligned_cols=12 Identities=17% Similarity=-0.241 Sum_probs=5.2
Q ss_pred CchHHHHHHHHH
Q 014152 398 MQEFLWTVGGGA 409 (430)
Q Consensus 398 ~~~F~~v~~~~~ 409 (430)
+.-.++++++++
T Consensus 64 ~~i~~Ii~gv~a 75 (122)
T PF01102_consen 64 PAIIGIIFGVMA 75 (122)
T ss_dssp TCHHHHHHHHHH
T ss_pred cceeehhHHHHH
Confidence 333455444433
No 44
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=44.62 E-value=1.4e+02 Score=26.49 Aligned_cols=30 Identities=10% Similarity=0.287 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 014152 147 LEAACSCLENEAKTLEQEAHPALDKLTSKI 176 (430)
Q Consensus 147 L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~v 176 (430)
|..+|..+..++..+-.....+=+.|+.++
T Consensus 41 m~~A~~~v~kql~~vs~~l~~tKkhLsqRI 70 (126)
T PF07889_consen 41 MSDAVASVSKQLEQVSESLSSTKKHLSQRI 70 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555444
No 45
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=44.16 E-value=57 Score=28.10 Aligned_cols=34 Identities=21% Similarity=0.146 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhhccccCCCc---cccccccCCchHHHHH
Q 014152 367 TATLVVSAFVVVAGIFGMNINIE---LFDEHKSGMQEFLWTV 405 (430)
Q Consensus 367 i~t~i~~~~tlIaGiFGMNl~~~---~~~~~~~~~~~F~~v~ 405 (430)
.+++++....+++++.+.|.-.. .| +||.|.+..
T Consensus 3 S~~Fi~~~~~~~~~Wi~~N~~~~~~~~f-----DpyPFilLn 39 (108)
T PF06210_consen 3 SWTFIIIFTVFLAVWILLNILAPPRPAF-----DPYPFILLN 39 (108)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccCCC-----CCccHHHHH
Confidence 46788888999999999998543 35 455565544
No 46
>PTZ00370 STEVOR; Provisional
Probab=42.83 E-value=80 Score=31.88 Aligned_cols=15 Identities=20% Similarity=0.547 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCchh
Q 014152 200 KVRDELEHLLDDDED 214 (430)
Q Consensus 200 ~vr~~l~~lLddD~D 214 (430)
.+-+-+|++..|+.|
T Consensus 110 el~e~~ee~fg~~~~ 124 (296)
T PTZ00370 110 ELLETYEEMFGDESD 124 (296)
T ss_pred HHHHHHHHHhcCccc
Confidence 466778888888888
No 47
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=42.21 E-value=82 Score=31.78 Aligned_cols=14 Identities=14% Similarity=0.487 Sum_probs=9.0
Q ss_pred HHHHHHHHhcCchh
Q 014152 201 VRDELEHLLDDDED 214 (430)
Q Consensus 201 vr~~l~~lLddD~D 214 (430)
+-+-++++..|+.|
T Consensus 112 l~e~~~~~fg~e~~ 125 (295)
T TIGR01478 112 LLEKYEEMFGDESH 125 (295)
T ss_pred HHHHHHHHhCCccc
Confidence 44556666777777
No 48
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=41.72 E-value=59 Score=31.62 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014152 354 KQNHLLQMGVMLTTATLVVSAFVVVAGIFGM 384 (430)
Q Consensus 354 ~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGM 384 (430)
+++++++. +..+-++..+|.+++.+.|+
T Consensus 4 ~k~~~~~~---~~~illg~~iGg~~G~~~~~ 31 (248)
T PF11368_consen 4 KKKRILRF---LLLILLGGLIGGFIGFFIGR 31 (248)
T ss_pred hHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 45567777 44444444444444443333
No 49
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=41.68 E-value=1.3e+02 Score=28.13 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 149 AACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEH 207 (430)
Q Consensus 149 ~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~ 207 (430)
.....|+.....++..+..+.+.+..+-+.-.--+|++.++.+-++..+++++-+.|.+
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555666665555554444333334456788999999999999988777766
No 50
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=41.02 E-value=1.9e+02 Score=23.48 Aligned_cols=28 Identities=7% Similarity=-0.110 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCc
Q 014152 362 GVMLTTATLVVSAFVVVAGIFGMNINIE 389 (430)
Q Consensus 362 ~l~LTi~t~i~~~~tlIaGiFGMNl~~~ 389 (430)
|...|++.+++-..--+.+.||..-..+
T Consensus 6 EA~~tl~l~l~yf~~W~~~ay~~~~~~~ 33 (80)
T PF06196_consen 6 EARWTLGLTLIYFAWWYGFAYGLGNGDG 33 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 3345666666666667777888875543
No 51
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=40.68 E-value=25 Score=28.27 Aligned_cols=24 Identities=4% Similarity=0.199 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhhccccCCC
Q 014152 365 LTTATLVVSAFVVVAGIFGMNINI 388 (430)
Q Consensus 365 LTi~t~i~~~~tlIaGiFGMNl~~ 388 (430)
++.+-.++++.++|.|++=-|+..
T Consensus 13 ~~~il~~~~iisfi~Gy~~q~~~~ 36 (76)
T PF06645_consen 13 MQYILIISAIISFIVGYITQSFSY 36 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677778888889988776654
No 52
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=40.47 E-value=62 Score=28.82 Aligned_cols=28 Identities=11% Similarity=-0.053 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 014152 400 EFLWTVGGGATGSIFLYVVAIAWCKHKR 427 (430)
Q Consensus 400 ~F~~v~~~~~~~~v~i~~~~~~yfkrk~ 427 (430)
|.|.+.+++++-.++++.++..++|+.+
T Consensus 34 GaW~Vl~F~glev~~l~~a~~~~~r~~~ 61 (140)
T PF10003_consen 34 GAWPVLPFAGLEVLALWYAFRRNYRHAR 61 (140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 4577777666666667777777777543
No 53
>PRK08456 flagellar motor protein MotA; Validated
Probab=39.88 E-value=53 Score=32.43 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhhc--cccCCCccccccccCCchHHHHHHHHHHHHH
Q 014152 365 LTTATLVVSAFVVVAGIF--GMNINIELFDEHKSGMQEFLWTVGGGATGSI 413 (430)
Q Consensus 365 LTi~t~i~~~~tlIaGiF--GMNl~~~~~~~~~~~~~~F~~v~~~~~~~~v 413 (430)
.|++.++++.+.++.|++ |=|+... + ++++|.+++++++.+++
T Consensus 4 ~tiiG~~~~~~~i~~~~~~~gg~~~~~-~-----~~~~~~IV~Ggt~~a~~ 48 (257)
T PRK08456 4 STILGMVLAVASISVGDILEGGNPLHV-I-----HLSSFIIVVPTALFAAM 48 (257)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHH-h-----hHhHHHHHHHHHHHHHH
Confidence 788888999988888866 6555432 2 46778888887766544
No 54
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=39.54 E-value=1.9e+02 Score=27.25 Aligned_cols=66 Identities=14% Similarity=0.335 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccCChhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014152 145 ACLEAACSCLENEAKTLEQEAHPALDKL---TSKISTLNLE-RVRQIKSRLVAITGRVQKVRDELEHLLD 210 (430)
Q Consensus 145 ~~L~~~~~~Le~e~~~Le~~~~~~Ld~L---~~~vs~~~Le-rlr~lK~~L~~l~~rv~~vr~~l~~lLd 210 (430)
+.|+.=...|++++..|.+.+..+..+| .+..++..++ .+..||........|+..++....++--
T Consensus 82 ~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtp 151 (201)
T KOG4603|consen 82 QVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTP 151 (201)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 4556666777777778887777765544 4667777774 6888999999999999999999988863
No 55
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=39.15 E-value=1.3e+02 Score=35.42 Aligned_cols=64 Identities=27% Similarity=0.460 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHhhhhhh
Q 014152 145 ACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLT 221 (430)
Q Consensus 145 ~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~Dm~~m~Lt 221 (430)
..|...|..++.+.+.|+.+.. . +.+.++++|+.|..++.++.++|.++++++++-.-| ++|.-
T Consensus 173 ~hL~velAdle~kir~LrqElE-------E-----K~enll~lr~eLddleae~~klrqe~~e~l~ea~ra-~~yrd 236 (1195)
T KOG4643|consen 173 LHLEVELADLEKKIRTLRQELE-------E-----KFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRA-DRYRD 236 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhh
Confidence 4566677777777776666554 2 236789999999999999999999999999876653 56644
No 56
>PF13042 DUF3902: Protein of unknown function (DUF3902)
Probab=38.81 E-value=71 Score=29.23 Aligned_cols=43 Identities=14% Similarity=0.080 Sum_probs=30.8
Q ss_pred HHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 014152 343 TEDYINIMLDD-KQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINI 388 (430)
Q Consensus 343 ted~i~~~Ld~-~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMNl~~ 388 (430)
..++++..-.. +-+++++- -+++|+.+++..++.|++=+++..
T Consensus 49 li~Ly~~~ty~k~~~k~l~k---t~~iSF~~avLGiifgI~~qll~~ 92 (161)
T PF13042_consen 49 LIDLYCKNTYDKKFSKVLIK---TNVISFNFAVLGIIFGIIHQLLGK 92 (161)
T ss_pred HHHHhcccchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33445444444 44555554 899999999999999999998864
No 57
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=38.16 E-value=1.2e+02 Score=23.74 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCC
Q 014152 363 VMLTTATLVVSAFVVVAGIFGMNINI 388 (430)
Q Consensus 363 l~LTi~t~i~~~~tlIaGiFGMNl~~ 388 (430)
+.++.+++.++.+.+.+.+-||=|+.
T Consensus 8 ivlAtiavFiaLagl~~~I~GlLfD~ 33 (62)
T PF11177_consen 8 IVLATIAVFIALAGLAAVIHGLLFDE 33 (62)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 35788888888899999999997764
No 58
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=37.92 E-value=21 Score=31.20 Aligned_cols=21 Identities=5% Similarity=0.259 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 014152 362 GVMLTTATLVVSAFVVVAGIF 382 (430)
Q Consensus 362 ~l~LTi~t~i~~~~tlIaGiF 382 (430)
++.+.++|.++...|+|.|+|
T Consensus 31 nliiG~vT~l~VLvtii~afv 51 (118)
T PF10856_consen 31 NLIIGAVTSLFVLVTIISAFV 51 (118)
T ss_pred EeehHHHHHHHHHHHHhheEE
Confidence 445788888888888887764
No 59
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=37.13 E-value=2.8e+02 Score=28.22 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 367 TATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKH 425 (430)
Q Consensus 367 i~t~i~~~~tlIaGiFGMNl~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~~~~yfkr 425 (430)
.|+.++....-|..++|=++-.+++. -|..-++.+++..+++-++.++|+++
T Consensus 107 ~~ssIlLl~~Siss~iG~YiLapl~~-------~i~~~~gAaila~iviP~~~~y~ln~ 158 (299)
T PF05884_consen 107 SWSSILLLGFSISSFIGGYILAPLFG-------IIFGPFGAAILAYIVIPLIAYYYLNK 158 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhcchhHHHHHHHHHHHHHHhhccc
Confidence 45555555555666666666544321 12222233444455555566666543
No 60
>PHA03231 glycoprotein BALF4; Provisional
Probab=36.54 E-value=2.1e+02 Score=33.19 Aligned_cols=18 Identities=6% Similarity=0.209 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 014152 326 IDGTLNKLSTLREYVDDT 343 (430)
Q Consensus 326 id~i~~~l~~l~e~i~~t 343 (430)
++++..+.......+.++
T Consensus 632 le~m~ReyN~y~qr~~dl 649 (829)
T PHA03231 632 LEEIFREYNLYKQRFYDI 649 (829)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 555555555555555333
No 61
>PRK09458 pspB phage shock protein B; Provisional
Probab=36.13 E-value=83 Score=25.47 Aligned_cols=35 Identities=26% Similarity=0.438 Sum_probs=26.1
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 014152 175 KISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDE 213 (430)
Q Consensus 175 ~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~ 213 (430)
.+|....++|.++-.+..+++.|++ .||++||.|.
T Consensus 35 ~Ls~~d~~~L~~L~~~A~rm~~RI~----tLE~ILDae~ 69 (75)
T PRK09458 35 GLSQEEQQRLAQLTEKAERMRERIQ----ALEAILDAEH 69 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHcccC
Confidence 3566777778777777777888876 6788888764
No 62
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=35.47 E-value=2.2e+02 Score=29.25 Aligned_cols=51 Identities=12% Similarity=0.225 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014152 160 TLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLD 210 (430)
Q Consensus 160 ~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLd 210 (430)
.+......+.+.......=..-..|..+-++|.+|+++|+.++.+|+++-.
T Consensus 267 ~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 267 RLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555555555544432222234556677888888899999888887754
No 63
>COG5487 Small integral membrane protein [Function unknown]
Probab=35.35 E-value=1.7e+02 Score=21.93 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhhccc
Q 014152 368 ATLVVSAFVVVAGIFGM 384 (430)
Q Consensus 368 ~t~i~~~~tlIaGiFGM 384 (430)
++++|.+.++|+|.+|.
T Consensus 4 waliFlvialIa~~lGF 20 (54)
T COG5487 4 WALIFLVIALIAGALGF 20 (54)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 67889999999999996
No 64
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=34.84 E-value=53 Score=29.18 Aligned_cols=54 Identities=9% Similarity=0.074 Sum_probs=30.7
Q ss_pred HHHHHHhhccccCCCcccc----ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 014152 374 AFVVVAGIFGMNINIELFD----EHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKR 427 (430)
Q Consensus 374 ~~tlIaGiFGMNl~~~~~~----~~~~~~~~F~~v~~~~~~~~v~i~~~~~~yfkrk~ 427 (430)
...++=+...+|=...+.. ...+....++++..++++.+++++.+|+.|.|-||
T Consensus 13 L~~l~q~~~~~~~nsS~la~~~~~s~~~~~~~lYIL~vmgfFgff~~gImlsyvRSKK 70 (129)
T PF02060_consen 13 LSKLWQETVQQSSNSSPLASRSPSSSDDDNEYLYILVVMGFFGFFTVGIMLSYVRSKK 70 (129)
T ss_dssp HHHHHHHHHHT--TTSSGGGS-S--TT-SSTT-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcccccCCCCCCCCceeehHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666666663332221 01123345677777777777788888999998776
No 65
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=34.72 E-value=1.9e+02 Score=29.27 Aligned_cols=48 Identities=21% Similarity=0.404 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Q 014152 160 TLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDM 215 (430)
Q Consensus 160 ~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~Dm 215 (430)
.|+..+..+.+.+ -.||.+.|.+|..+.+|+..++.-|++|-....-+
T Consensus 29 ~L~~v~~diF~rI--------~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs~kAi 76 (297)
T PF11945_consen 29 YLDKVSNDIFSRI--------SARVERNRERLQAIQQRIEVAQAKIEKLQGSKKAI 76 (297)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccE
Confidence 5555555555444 34678888999999999999999999987776654
No 66
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=34.69 E-value=69 Score=28.80 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=7.3
Q ss_pred HHHHHHHHcCcC
Q 014152 418 VAIAWCKHKRLL 429 (430)
Q Consensus 418 ~~~~yfkrk~wl 429 (430)
+.+.|||||+-+
T Consensus 73 ~~~lffkr~~~~ 84 (149)
T PF10754_consen 73 LLYLFFKRKRRF 84 (149)
T ss_pred HHHHHHHccchh
Confidence 455567777643
No 67
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=34.63 E-value=2.6e+02 Score=23.06 Aligned_cols=7 Identities=29% Similarity=0.601 Sum_probs=3.2
Q ss_pred Hhhcccc
Q 014152 379 AGIFGMN 385 (430)
Q Consensus 379 aGiFGMN 385 (430)
+++++.+
T Consensus 39 ~~~~~~~ 45 (112)
T PF14015_consen 39 ASLSGLG 45 (112)
T ss_pred HHHhhcc
Confidence 4444443
No 68
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=34.42 E-value=54 Score=34.76 Aligned_cols=82 Identities=15% Similarity=0.274 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHhhhhhh
Q 014152 142 ALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLT 221 (430)
Q Consensus 142 aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~Dm~~m~Lt 221 (430)
=|||+-..+...+=+++..|.++|+.+.-+|......-+. |+..|..|+.+|..+|..+---.|++-=.|-.|+.-+=+
T Consensus 25 ELecvtN~TLaniIRQLsSLSKhAEdIFGELf~da~~f~~-R~NSLQ~RIDRL~vkVtqLDs~~eevsLqdinmrKAFkS 103 (518)
T KOG1830|consen 25 ELECVTNITLANIIRQLSSLSKHAEDIFGELFNDANNFNH-RANSLQERIDRLAVKVTQLDSTVEEVSLQDINMRKAFKS 103 (518)
T ss_pred ceeeecchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhHHHHHHHHHhhhhhccCCcccccccchhHHHhhhhh
Confidence 3788888888888888889999999999999876544333 566777777777777776666666665555555544444
Q ss_pred HHH
Q 014152 222 EKL 224 (430)
Q Consensus 222 ~~~ 224 (430)
.+.
T Consensus 104 Stv 106 (518)
T KOG1830|consen 104 STV 106 (518)
T ss_pred hhh
Confidence 433
No 69
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=34.38 E-value=72 Score=26.82 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhH-HHHHHHHHHHHHHH
Q 014152 139 EFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNL-ERVRQIKSRLVAIT 195 (430)
Q Consensus 139 El~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~L-erlr~lK~~L~~l~ 195 (430)
|+.+|+++++....+=-.-......-...+-+.|...++...| +.+|+||++-....
T Consensus 12 Ei~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~ 69 (98)
T PF04504_consen 12 EIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAV 69 (98)
T ss_pred HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 7788888887754321000001222222333344455665555 67999998865533
No 70
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=34.24 E-value=2.5e+02 Score=22.67 Aligned_cols=29 Identities=24% Similarity=0.505 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 180 NLERVRQIKSRLVAITGRVQKVRDELEHL 208 (430)
Q Consensus 180 ~Lerlr~lK~~L~~l~~rv~~vr~~l~~l 208 (430)
-..+|..+|+++..+..+++.+++-+.++
T Consensus 62 y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 62 YVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678889999999999999888877665
No 71
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=34.11 E-value=75 Score=27.97 Aligned_cols=52 Identities=17% Similarity=0.283 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q 014152 365 LTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRLLE 430 (430)
Q Consensus 365 LTi~t~i~~~~tlIaGiFGMNl~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~~~~yfkrk~wl~ 430 (430)
.++.+++...+.++.-+.|+=+...- + +++..+.| ++.+..-.|++||+|+.
T Consensus 6 valLa~C~L~G~~lGdlLG~llGV~a------N-------VGGVGiAM-lLLi~~~~~l~k~G~l~ 57 (125)
T TIGR00807 6 VALLAVCHLLGVYLGNILGMALGVKA------N-------VGGVGIAM-ILLIISKELLAKRGHLP 57 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCc------c-------cchHHHHH-HHHHHHHHHHHHcCCCC
Confidence 46677888888888888888775431 1 22233333 33445677889999974
No 72
>PRK02935 hypothetical protein; Provisional
Probab=34.07 E-value=3.1e+02 Score=23.71 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 014152 352 DDKQNHLLQMGVMLTTATLVVS 373 (430)
Q Consensus 352 d~~rN~lmk~~l~LTi~t~i~~ 373 (430)
+++-|++-.+.|.|..+.+++.
T Consensus 6 ssKINkiRt~aL~lvfiG~~vM 27 (110)
T PRK02935 6 SNKINKIRTFALSLVFIGFIVM 27 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4566776655555555544443
No 73
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=33.72 E-value=2.5e+02 Score=22.60 Aligned_cols=18 Identities=17% Similarity=0.435 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 014152 155 ENEAKTLEQEAHPALDKL 172 (430)
Q Consensus 155 e~e~~~Le~~~~~~Ld~L 172 (430)
++.++.++..+.++..+.
T Consensus 32 ~~ti~~l~~~~~~i~~e~ 49 (90)
T PF06103_consen 32 NKTIDTLQEQVDPITKEI 49 (90)
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 444445555555555444
No 74
>COG3516 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.61 E-value=58 Score=30.22 Aligned_cols=40 Identities=18% Similarity=0.429 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCchhHhhh
Q 014152 179 LNLERVRQIKSRLVAITGRVQ---KVRDELEHLLDDDEDMAEM 218 (430)
Q Consensus 179 ~~Lerlr~lK~~L~~l~~rv~---~vr~~l~~lLddD~Dm~~m 218 (430)
..|.+|..++++|..|.+... .+++.|+++|.|++.+..+
T Consensus 115 p~L~kLLeaR~~L~~L~~~ldg~~~~e~~l~~lL~n~~~l~~L 157 (169)
T COG3516 115 PELKKLLEARTALADLKGPLDGNPAFEELLQDLLKNEELLQKL 157 (169)
T ss_pred HHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHcCHHHHHHH
Confidence 356778888888888887654 5999999999999875443
No 75
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=33.05 E-value=83 Score=20.72 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=11.5
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 014152 399 QEFLWTVGGGATGSIFLYV 417 (430)
Q Consensus 399 ~~F~~v~~~~~~~~v~i~~ 417 (430)
+.|-|+.|+..++++.+..
T Consensus 2 WYfaWilG~~lA~~~~i~~ 20 (28)
T PF08173_consen 2 WYFAWILGVLLACAFGILN 20 (28)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4578888766655554433
No 76
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=32.79 E-value=1.6e+02 Score=35.87 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=23.6
Q ss_pred HHHHHHH-----hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014152 335 TLREYVD-----DTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFG 383 (430)
Q Consensus 335 ~l~e~i~-----~ted~i~~~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFG 383 (430)
++||.+. .+.+++|..++....+.+ +|.+|+++++.++. +||
T Consensus 1315 RIRENlr~~~~~~l~eIIN~SINQTLsRTI-----~TSlTTLLallaLl--lFG 1361 (1403)
T PRK12911 1315 RIREDRQEKLFTPMPILINDALQKTLGRTV-----MTTATTLSVLLILL--FVG 1361 (1403)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHhhhhhh-----HHHHHHHHHHHHHH--HHc
Confidence 4455543 344566665555555544 66777776666655 454
No 77
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=32.78 E-value=2.7e+02 Score=24.75 Aligned_cols=61 Identities=26% Similarity=0.328 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc--cCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 148 EAACSCLENEAKTLEQEAHPALDKLTS--KISTLNLERVRQIKSRLVAITGRVQKVRDELEHL 208 (430)
Q Consensus 148 ~~~~~~Le~e~~~Le~~~~~~Ld~L~~--~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~l 208 (430)
+.+...|..-=+.|..++..+-+.|.. .++..--+.|-.++..+..+...++.|+.+++.|
T Consensus 53 ~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~L 115 (126)
T PF07889_consen 53 EQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGL 115 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444333321 2233333455666666666666666666666655
No 78
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=32.63 E-value=23 Score=40.27 Aligned_cols=30 Identities=33% Similarity=0.634 Sum_probs=19.3
Q ss_pred chHHHHH-HHHHHHHHHHHHHHHHHHHHcCc
Q 014152 399 QEFLWTV-GGGATGSIFLYVVAIAWCKHKRL 428 (430)
Q Consensus 399 ~~F~~v~-~~~~~~~v~i~~~~~~yfkrk~w 428 (430)
..|...+ ++++++.++++.++++|||||.|
T Consensus 272 T~fLl~ILG~~~livl~lL~vLl~yCrrkc~ 302 (807)
T PF10577_consen 272 TVFLLAILGGTALIVLILLCVLLCYCRRKCL 302 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 4454333 44555555666678889999876
No 79
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=32.62 E-value=2.4e+02 Score=24.66 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 014152 352 DDKQNHLLQMGVMLTTATLVVSA 374 (430)
Q Consensus 352 d~~rN~lmk~~l~LTi~t~i~~~ 374 (430)
+++-|++-.+.|.|..+.+++..
T Consensus 5 ~~KiN~~R~~al~lif~g~~vmy 27 (114)
T PF11023_consen 5 SSKINKIRTFALSLIFIGMIVMY 27 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Confidence 45677776665556555555443
No 80
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=32.61 E-value=8.8 Score=32.31 Aligned_cols=8 Identities=0% Similarity=-0.188 Sum_probs=3.2
Q ss_pred HHHHHHHc
Q 014152 419 AIAWCKHK 426 (430)
Q Consensus 419 ~~~yfkrk 426 (430)
.|||++||
T Consensus 87 ~w~f~~r~ 94 (96)
T PTZ00382 87 CWWFVCRG 94 (96)
T ss_pred hheeEEee
Confidence 34444344
No 81
>PF04611 AalphaY_MDB: Mating type protein A alpha Y mating type dependent binding region ; InterPro: IPR007689 Mating-type protein A-alpha specifies the A-alpha-Y mating type. The A-alpha-Y protein binds to the AalphaZ protein of another mating type in Schizophyllum commune [] and may also regulate gene expression of the homokaryotic cell.; GO: 0006355 regulation of transcription, DNA-dependent, 0019953 sexual reproduction
Probab=32.15 E-value=3.8e+02 Score=24.10 Aligned_cols=61 Identities=25% Similarity=0.276 Sum_probs=36.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 014152 134 KVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVR 202 (430)
Q Consensus 134 ~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr 202 (430)
..||= +++.++|..+=+... .-...++...+.-...|++.||+.+..|+-++ .+++|++-.
T Consensus 59 a~LP~--k~iksal~aYe~AC~----RWr~~l~e~F~~tA~svsP~Nlhll~~LR~rl--yt~QVekW~ 119 (147)
T PF04611_consen 59 AKLPP--KAIKSALSAYEKACA----RWRSDLEESFDITAKSVSPHNLHLLNQLRFRL--YTQQVEKWL 119 (147)
T ss_pred cCCCh--HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcCchhHHHHHHHHHHH--HHHHHHHHH
Confidence 34565 777766654332222 22233334444555789999999999998775 556666643
No 82
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=31.64 E-value=50 Score=21.65 Aligned_cols=9 Identities=22% Similarity=0.110 Sum_probs=4.2
Q ss_pred HHHHHHHHc
Q 014152 418 VAIAWCKHK 426 (430)
Q Consensus 418 ~~~~yfkrk 426 (430)
+.+++.|||
T Consensus 24 ~~~~~~~rk 32 (34)
T TIGR01167 24 GGLLLRKRK 32 (34)
T ss_pred HHHHheecc
Confidence 444444544
No 83
>KOG3176 consensus Predicted alpha-helical protein, potentially involved in replication/repair [Replication, recombination and repair]
Probab=30.56 E-value=1.7e+02 Score=28.37 Aligned_cols=77 Identities=25% Similarity=0.449 Sum_probs=47.7
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 129 NRDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHL 208 (430)
Q Consensus 129 ~~~~~~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~l 208 (430)
....++-|||+...+|.+|+-+-.. -..+|..+... .|...+..-.|||++-+=+. =++-|.+|+-.-..++
T Consensus 38 Ek~APeLLp~~~elve~~ldqIe~~----eE~i~~~a~~~--dlr~~~~qmELERvkfvlrS--YlRcRL~KIekf~~~~ 109 (223)
T KOG3176|consen 38 EKCAPELLPYALELVERLLDQIEHM----EETIERKASNK--DLRVSLHQMELERVKFVLRS--YLRCRLQKIEKFLQHI 109 (223)
T ss_pred hccChhhcCChHHHHHHHHHHHHHH----HHHHHHhcccc--cHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhHHh
Confidence 4678899999999999988764332 11333222111 24445556678888743332 2456777777777777
Q ss_pred hcCch
Q 014152 209 LDDDE 213 (430)
Q Consensus 209 LddD~ 213 (430)
|+.++
T Consensus 110 ln~ee 114 (223)
T KOG3176|consen 110 LNQEE 114 (223)
T ss_pred hcchh
Confidence 77766
No 84
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=30.33 E-value=53 Score=32.83 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhhc--cc--cCCCccccccccCCchHHHHHHHHHHHHH
Q 014152 365 LTTATLVVSAFVVVAGIF--GM--NINIELFDEHKSGMQEFLWTVGGGATGSI 413 (430)
Q Consensus 365 LTi~t~i~~~~tlIaGiF--GM--Nl~~~~~~~~~~~~~~F~~v~~~~~~~~v 413 (430)
.|++.+++++..+++|++ |. |+.. ++ ++++|.+|+++++++.+
T Consensus 7 ~t~iGii~g~~~i~~~i~~gg~~~~~~~-~~-----~~~s~lIV~GGt~~a~l 53 (271)
T PRK06926 7 LTPVGIFLGITIVVLGVISNSGLSGFLS-FI-----DLTSILIVTGGLCAALF 53 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHccccchhHH-Hh-----hHhHHHHHHHHHHHHHH
Confidence 588888888888888877 34 3443 23 46778888877765544
No 85
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=30.25 E-value=1.6e+02 Score=34.31 Aligned_cols=44 Identities=14% Similarity=0.021 Sum_probs=22.1
Q ss_pred HHHHhhccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 014152 376 VVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRL 428 (430)
Q Consensus 376 tlIaGiFGMNl~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~~~~yfkrk~w 428 (430)
+.+.++|||.--.+ ..+.|.+.+.+..+++.-+.=.+|+||.+|
T Consensus 858 ~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~e~~K~~~~~~~~~ 901 (902)
T PRK10517 858 SPLASYLQLQALPL---------SYFPWLVAILAGYMTLTQLVKGFYSRRYGW 901 (902)
T ss_pred HHHHHhhCCcCCCh---------hHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34678888764321 123333333333333344445667787666
No 86
>PRK09110 flagellar motor protein MotA; Validated
Probab=30.18 E-value=51 Score=33.12 Aligned_cols=43 Identities=21% Similarity=0.181 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhhc--cccCCCccccccccCCchHHHHHHHHHHHHH
Q 014152 365 LTTATLVVSAFVVVAGIF--GMNINIELFDEHKSGMQEFLWTVGGGATGSI 413 (430)
Q Consensus 365 LTi~t~i~~~~tlIaGiF--GMNl~~~~~~~~~~~~~~F~~v~~~~~~~~v 413 (430)
+|++.++++.+.+++|++ |=|+... + ++++|.+++++++.+.+
T Consensus 2 ~tliGli~~~~~i~~g~~l~gg~~~~l-~-----~~~~~lIV~Ggtlga~l 46 (283)
T PRK09110 2 LIIIGYIVVLGSVFGGYLLAGGHLGAL-I-----QPAELLIIGGAALGAFI 46 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCChhHh-h-----chhHHHHHHHhHHHHHH
Confidence 688889999999998977 5455542 2 56778888887765543
No 87
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=30.13 E-value=3.8e+02 Score=25.09 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=24.1
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 134 KVLPFEFVALEACLEAACSCLENEAKTLEQEAHPA 168 (430)
Q Consensus 134 ~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~ 168 (430)
..|-.=|.=|....+.+-..|+.|++.|+.++..+
T Consensus 105 qeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~l 139 (171)
T PF04799_consen 105 QELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRL 139 (171)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555668888888888888888888888777754
No 88
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=29.95 E-value=1.7e+02 Score=27.50 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014152 361 MGVMLTTATLVVSAFVV 377 (430)
Q Consensus 361 ~~l~LTi~t~i~~~~tl 377 (430)
+.+.|++++.++..++.
T Consensus 24 ~QlvLgvVs~~iL~F~~ 40 (183)
T PF12263_consen 24 IQLVLGVVSAVILLFAN 40 (183)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34557777776666654
No 89
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=29.82 E-value=3.7e+02 Score=23.33 Aligned_cols=63 Identities=17% Similarity=0.361 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 144 EACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNL-ERVRQIKSRLVAITGRVQKVRDELEHL 208 (430)
Q Consensus 144 E~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~L-erlr~lK~~L~~l~~rv~~vr~~l~~l 208 (430)
.+.+-.....|.+++++++..+...+|.-. .|+.+. .|+=.+-.++..+++.+..+++-+.+.
T Consensus 3 ~a~~~~q~~~l~~~v~~lRed~r~SEdrsa--~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsem 66 (112)
T PF07439_consen 3 DAGLHQQLGTLNAEVKELREDIRRSEDRSA--ASRASMHRRLDELVERVTTLESSVSTLKADVSEM 66 (112)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhc
Confidence 344555666777777777777776555432 233333 234445555555565555555544443
No 90
>PF03408 Foamy_virus_ENV: Foamy virus envelope protein ; InterPro: IPR005070 Expression of the envelope (Env) glycoprotein is essential for viral particle egress. This feature is unique to the Spumavirinae, a subclass of the Retroviridae. ; GO: 0019031 viral envelope
Probab=29.70 E-value=1e+02 Score=35.33 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhhccc
Q 014152 325 QIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGV-------------------MLTTATLVVSAFVVVAGIFGM 384 (430)
Q Consensus 325 ~id~i~~~l~~l~e~i~~ted~i~~~Ld~~rN~lmk~~l-------------------~LTi~t~i~~~~tlIaGiFGM 384 (430)
|+-+++.++..++=.|.+|-|.|.-++....-+++|++| +=++.+++-.+|.|+.|.+|=
T Consensus 861 hLvgiIaklk~i~IevTStwEsIKdQierakaeLLRLDlHEGD~p~WikqL~~At~DvWPaaA~~~~~iGnfL~~ta~g 939 (981)
T PF03408_consen 861 HLVGIIAKLKGIQIEVTSTWESIKDQIERAKAELLRLDLHEGDYPAWIKQLASATKDVWPAAASFLSGIGNFLSGTAGG 939 (981)
T ss_pred hHHHHHHHhcCcEEEEeehHhhHHHHHHHHHHHHheeecccCCcHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcccc
Confidence 677888888888888888888888888877777777654 446777888888888755543
No 91
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=29.60 E-value=1e+02 Score=20.62 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=10.3
Q ss_pred chHHHHHHHHHHHHHHH
Q 014152 399 QEFLWTVGGGATGSIFL 415 (430)
Q Consensus 399 ~~F~~v~~~~~~~~v~i 415 (430)
+.|-|+.|...++++.+
T Consensus 2 WYfaWilG~~lA~~~~v 18 (30)
T TIGR02106 2 WYFAWILGTLLACAFGV 18 (30)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 45788887655544443
No 92
>PRK14756 hypothetical protein; Provisional
Probab=29.39 E-value=45 Score=21.89 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 014152 362 GVMLTTATLVVSAFVVVAG 380 (430)
Q Consensus 362 ~l~LTi~t~i~~~~tlIaG 380 (430)
+|+++.+|++++.+-.|++
T Consensus 4 dLK~SL~tTvvaL~~Iva~ 22 (29)
T PRK14756 4 DLKFSLVTTIIVLGLIVAV 22 (29)
T ss_pred chhhhHHHHHHHHHHHHHH
Confidence 4555666655555554443
No 93
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=29.35 E-value=1.7e+02 Score=23.58 Aligned_cols=66 Identities=12% Similarity=0.026 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccccccCCchHHHHHHHHHHHHHHHHH-HHHHHHHHcCc
Q 014152 356 NHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYV-VAIAWCKHKRL 428 (430)
Q Consensus 356 N~lmk~~l~LTi~t~i~~~~tlIaGiFGMNl~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~-~~~~yfkrk~w 428 (430)
++.++.-..=-++=+++-+.-++++.++.|-+.+ +.+.||..+..+++.+.--++ .+++.+++|.|
T Consensus 8 ~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~-------~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erpw 74 (76)
T PF11970_consen 8 RRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIG-------HGPSFWLFCIAGFMQPSQGFVDCLVFTLRERPW 74 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------CCCchHHHHHHHHHHHccCHHHhhheeeecccC
Confidence 3344442223344444555455666666662211 223455555544444433334 34444677777
No 94
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=29.32 E-value=4.1e+02 Score=28.32 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHcCc
Q 014152 413 IFLYVVAIAWCKHKRL 428 (430)
Q Consensus 413 v~i~~~~~~yfkrk~w 428 (430)
++..++++...|+.||
T Consensus 221 viC~~~l~gl~r~Sr~ 236 (418)
T cd07912 221 VICLVLLVGLARHSRC 236 (418)
T ss_pred HHHHHHHHHHHHhcch
Confidence 3334456666777776
No 95
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=29.08 E-value=2.4e+02 Score=27.93 Aligned_cols=53 Identities=26% Similarity=0.468 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHh-h--ccCChhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcC
Q 014152 159 KTLEQEAHPALDKL-T--SKISTLNLERVRQIKSRLVA---ITGRVQKVRDELEHLLDD 211 (430)
Q Consensus 159 ~~Le~~~~~~Ld~L-~--~~vs~~~Lerlr~lK~~L~~---l~~rv~~vr~~l~~lLdd 211 (430)
.++.+.+..+++.. . .+++...|..|++++.+|.. +..+|.++.++|+++|..
T Consensus 174 ~Eia~~A~~~~~~~~~gk~~v~~kal~~lr~i~~Kl~~lsFld~~v~~l~~~i~~~L~~ 232 (257)
T PF11348_consen 174 DEIAQEARDILEKSFAGKDQVSQKALSPLRRIRDKLAGLSFLDPRVAPLVDMIDAVLNS 232 (257)
T ss_pred HHHHHHHHHHHHhhhcCcccccHhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHh
Confidence 34555566665543 2 35888999999999987755 679999999999999875
No 96
>PRK10884 SH3 domain-containing protein; Provisional
Probab=28.60 E-value=5.3e+02 Score=24.67 Aligned_cols=22 Identities=18% Similarity=0.567 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014152 187 IKSRLVAITGRVQKVRDELEHL 208 (430)
Q Consensus 187 lK~~L~~l~~rv~~vr~~l~~l 208 (430)
.+.++-++++.+..+++.+.++
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~ 112 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNI 112 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555553
No 97
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=28.47 E-value=85 Score=22.53 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=5.1
Q ss_pred HHHHHHHHcCc
Q 014152 418 VAIAWCKHKRL 428 (430)
Q Consensus 418 ~~~~yfkrk~w 428 (430)
+...+.++|++
T Consensus 23 i~~~~~~~r~~ 33 (45)
T TIGR03141 23 ILWSLLDRRRL 33 (45)
T ss_pred HHHHHHHHHHH
Confidence 34444455543
No 98
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=28.46 E-value=4.6e+02 Score=23.91 Aligned_cols=72 Identities=18% Similarity=0.316 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc---cCChhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCchhHhhhh
Q 014152 148 EAACSCLENEAKTLEQEAHPALDKLTS---KISTLNLERVRQIKSRLV----AITGRVQKVRDELEHLLDDDEDMAEMY 219 (430)
Q Consensus 148 ~~~~~~Le~e~~~Le~~~~~~Ld~L~~---~vs~~~Lerlr~lK~~L~----~l~~rv~~vr~~l~~lLddD~Dm~~m~ 219 (430)
-.+...||.+...+...+..++..|.. ++|.-.++-+.-+|.... .+..-|+..+..|.+..+=+.+|.-+|
T Consensus 51 ~~~L~~LE~~a~~ia~svd~ll~~L~~~L~~mS~~Tv~~~~~y~~sv~~~cdsvD~sik~~y~liakceELn~~M~~v~ 129 (149)
T PF10157_consen 51 PAVLHDLERDAQAIAESVDSLLRSLRSSLHSMSAITVEHMETYKDSVDKLCDSVDASIKSMYTLIAKCEELNESMKPVY 129 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777766653 344444454444444333 344555556666666666666666555
No 99
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=28.33 E-value=1.3e+02 Score=22.04 Aligned_cols=24 Identities=17% Similarity=0.005 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Q 014152 403 WTVGGGATGSIFLYVVAIAWCKHK 426 (430)
Q Consensus 403 ~v~~~~~~~~v~i~~~~~~yfkrk 426 (430)
+++++.+++.++.++++..|-|-|
T Consensus 7 ~iFsvvIil~If~~iGl~IyQkik 30 (49)
T PF11044_consen 7 TIFSVVIILGIFAWIGLSIYQKIK 30 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666777888886643
No 100
>COG2733 Predicted membrane protein [Function unknown]
Probab=28.06 E-value=2.3e+02 Score=29.95 Aligned_cols=66 Identities=18% Similarity=0.292 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccccccCCchHHHHHH-HHHHHHHHHHHHHHHHHHHcCcC
Q 014152 353 DKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVG-GGATGSIFLYVVAIAWCKHKRLL 429 (430)
Q Consensus 353 ~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMNl~~~~~~~~~~~~~~F~~v~~-~~~~~~v~i~~~~~~yfkrk~wl 429 (430)
+++|.+=+...+.|++.++++.+-+++-+|+=|+ + .+|.-.+. ..++++++=++++...||+--|+
T Consensus 2 ~rl~~lrr~K~iA~~lL~i~~~~f~l~~~~~nn~----w-------~g~v~a~aEAAmVGgLADWFAVtALFr~Plgi 68 (415)
T COG2733 2 NKLNELRRAKVIATGLLLIAAGVFILCRFFENNA----W-------VGFVGAIAEAAMVGGLADWFAVTALFRHPLGI 68 (415)
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccH----H-------HHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCC
Confidence 3555555555566666666666666666666661 1 11222222 33445566677777788864443
No 101
>COG4267 Predicted membrane protein [Function unknown]
Probab=27.95 E-value=3.3e+02 Score=29.01 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=37.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccccccCCchHHHHHH-HHHHHHHHHHHHHHHHHHHcC
Q 014152 350 MLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVG-GGATGSIFLYVVAIAWCKHKR 427 (430)
Q Consensus 350 ~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMNl~~~~~~~~~~~~~~F~~v~~-~~~~~~v~i~~~~~~yfkrk~ 427 (430)
.+-..--++|+++... .-++++.+..+-++|||---.. .-|.|-+. ..+-..+...+....||-+++
T Consensus 325 tlrq~i~~~~~lQ~~a--~l~~flL~~~Ll~~~~lS~~~l---------~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~ 392 (467)
T COG4267 325 TLRQGILEIMELQMLA--SLLCFLLADALLLWFGLSEYYL---------DLFYVDVLGVSCQIVFMSLLNIFLYFDYRR 392 (467)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcChHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3555556677664444 4455666677889999964321 23544443 333333444445667776654
No 102
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=27.77 E-value=2.1e+02 Score=26.40 Aligned_cols=6 Identities=0% Similarity=0.030 Sum_probs=4.4
Q ss_pred HHHcCc
Q 014152 423 CKHKRL 428 (430)
Q Consensus 423 fkrk~w 428 (430)
+|+|+|
T Consensus 72 ~Ryr~w 77 (161)
T COG3402 72 VRYRVW 77 (161)
T ss_pred Hhhhhh
Confidence 677777
No 103
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=27.76 E-value=2.2e+02 Score=23.58 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCC
Q 014152 363 VMLTTATLVVSAFVVVAGIFGMNIN 387 (430)
Q Consensus 363 l~LTi~t~i~~~~tlIaGiFGMNl~ 387 (430)
..+-++.+++++++.++|++-+...
T Consensus 6 ~wll~~G~l~~~~A~~~G~~d~~~~ 30 (104)
T PF09990_consen 6 FWLLVLGLLGAIVAVLTGFVDLLTV 30 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4577788889999999999988776
No 104
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=27.73 E-value=5.1e+02 Score=24.24 Aligned_cols=31 Identities=19% Similarity=0.451 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014152 180 NLERVRQIKSRLVAITGRVQKVRDELEHLLD 210 (430)
Q Consensus 180 ~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLd 210 (430)
.++++-.+.+++..|+.++.-+...|+.+-+
T Consensus 135 ~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 135 EIQRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777777777766543
No 105
>PRK11020 hypothetical protein; Provisional
Probab=27.59 E-value=2.9e+02 Score=24.17 Aligned_cols=74 Identities=12% Similarity=0.236 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hHhhhhhhHHHhhhh
Q 014152 155 ENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDE-DMAEMYLTEKLMQQL 228 (430)
Q Consensus 155 e~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~-Dm~~m~Lt~~~~~~~ 228 (430)
.+|+..|.+..+.+=..+..-..+.+-+-+-++++....++.++..++..=..-|..+. ++.+|.+++.....+
T Consensus 4 K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~~lpF~R~iTK~E 78 (118)
T PRK11020 4 KNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLMKLPFSRAITKKE 78 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhccHHH
Confidence 34455555444433333333334455667889999999999999999988777776554 788899888776554
No 106
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=27.52 E-value=4.2e+02 Score=23.16 Aligned_cols=11 Identities=0% Similarity=0.021 Sum_probs=5.1
Q ss_pred HHHHhhccccC
Q 014152 376 VVVAGIFGMNI 386 (430)
Q Consensus 376 tlIaGiFGMNl 386 (430)
.+|..+..|+.
T Consensus 76 Gmi~~f~~l~~ 86 (139)
T PF01618_consen 76 GMIEAFQALAE 86 (139)
T ss_pred HHHHHHHHHhc
Confidence 34444555543
No 107
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=27.52 E-value=6.5e+02 Score=25.34 Aligned_cols=94 Identities=22% Similarity=0.316 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccccccCCch
Q 014152 325 QIDGTLNKLSTLREYVDDTEDYINIMLD----DKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQE 400 (430)
Q Consensus 325 ~id~i~~~l~~l~e~i~~ted~i~~~Ld----~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMNl~~~~~~~~~~~~~~ 400 (430)
.++++..++.++.+.++...+.++..+| ..-|+.-.+ +-++|++-+++.-.|=+.|- =.|=|. .++.
T Consensus 221 ~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~i---mk~LTi~s~iflPpTlIagi--yGMNf~----~mPe 291 (322)
T COG0598 221 YLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNEI---MKILTIVSTIFLPPTLITGF--YGMNFK----GMPE 291 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHcc--cccCCC----CCcC
Confidence 3445567777777777777777766655 455666555 99999999999998988885 223242 5666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 014152 401 FLWTVGGGATGSIFLYVVAIAWCKHKRL 428 (430)
Q Consensus 401 F~~v~~~~~~~~v~i~~~~~~yfkrk~w 428 (430)
.-|-+| -++++++++++.++.+.+-++
T Consensus 292 l~~~~G-y~~~l~~m~~~~~~~~~~frr 318 (322)
T COG0598 292 LDWPYG-YPIALILMLLLALLLYLYFRR 318 (322)
T ss_pred CCCccc-HHHHHHHHHHHHHHHHHHHHh
Confidence 666664 455667777777777766543
No 108
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=27.26 E-value=96 Score=27.65 Aligned_cols=9 Identities=11% Similarity=-0.134 Sum_probs=4.0
Q ss_pred CCchHHHHH
Q 014152 397 GMQEFLWTV 405 (430)
Q Consensus 397 ~~~~F~~v~ 405 (430)
+|.+..|-+
T Consensus 17 wP~a~GWwl 25 (146)
T PF14316_consen 17 WPLAPGWWL 25 (146)
T ss_pred CCccHHHHH
Confidence 454444433
No 109
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=26.96 E-value=21 Score=32.20 Aligned_cols=19 Identities=21% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 014152 365 LTTATLVVSAFVVVAGIFG 383 (430)
Q Consensus 365 LTi~t~i~~~~tlIaGiFG 383 (430)
++++.++++...+..|+|.
T Consensus 9 ~n~l~~l~g~~li~~g~~~ 27 (221)
T PF00335_consen 9 LNVLFLLLGLALIGVGIWL 27 (221)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555556666
No 110
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=26.78 E-value=1.6e+02 Score=25.65 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 014152 401 FLWTVGGGATGSIFLYVVAIAWCKHKR 427 (430)
Q Consensus 401 F~~v~~~~~~~~v~i~~~~~~yfkrk~ 427 (430)
.-|.++..++++ ++.|.||++++
T Consensus 69 ~nwavgsF~l~s----~~~we~Cr~~r 91 (118)
T PF12597_consen 69 ANWAVGSFFLGS----LGSWEYCRYNR 91 (118)
T ss_pred hhhhhHHHHHHH----HHHHHHHHHHH
Confidence 455554443333 35677777653
No 111
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=26.70 E-value=2.8e+02 Score=26.28 Aligned_cols=34 Identities=9% Similarity=0.240 Sum_probs=23.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014152 350 MLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGM 384 (430)
Q Consensus 350 ~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGM 384 (430)
.++-+||++..+.+-. +.+++|+++.++.|.++|
T Consensus 89 ~~s~~rN~i~~l~~y~-~~~~~~gl~pl~~g~~~~ 122 (186)
T PF07086_consen 89 LLSLRRNNISLLRLYM-IGSSLFGLLPLIYGAMYY 122 (186)
T ss_pred HHhcccchHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3567899887664433 566777778888887774
No 112
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=26.60 E-value=4.6e+02 Score=23.35 Aligned_cols=65 Identities=20% Similarity=0.341 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh---hhHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 014152 144 EACLEAACSCLENEAKTLEQEAHPALDKLTSKIST---LNLERVR-QIKSRLVAITGRVQKVRDELEHL 208 (430)
Q Consensus 144 E~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~---~~Lerlr-~lK~~L~~l~~rv~~vr~~l~~l 208 (430)
|-.++.+-...+..+..+...+....+.+...+.. .-|.||- +-|+.+..|..||..+...|+++
T Consensus 60 ~e~~~~~~~~~~~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l 128 (132)
T PF05597_consen 60 EEQVEEARDQVKSRVDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444433322 1222221 23566666666666666666654
No 113
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=26.31 E-value=3.2e+02 Score=21.35 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhhccccCC
Q 014152 365 LTTATLVVSAFVVVAGIFGMNIN 387 (430)
Q Consensus 365 LTi~t~i~~~~tlIaGiFGMNl~ 387 (430)
+-++.+++.+.++..|.|-|-=+
T Consensus 4 ~iv~lll~ii~sL~saL~~l~kd 26 (63)
T PF11137_consen 4 LIVLLLLAIIASLFSALFFLVKD 26 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 67788889999999999999654
No 114
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=26.30 E-value=1.7e+02 Score=28.95 Aligned_cols=81 Identities=20% Similarity=0.327 Sum_probs=51.9
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 014152 130 RDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVA-----ITGRVQKVRDE 204 (430)
Q Consensus 130 ~~~~~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~-----l~~rv~~vr~~ 204 (430)
...+...|| .++|.++......|+.-....-..++..+..+..++-...+.+.-.||+++.. ++....+.++.
T Consensus 184 ~elp~f~p~--~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~~~~~~fp~L~~~i~~~v~~~l~~~~~~a~~~ 261 (295)
T PF01031_consen 184 RELPGFVPE--SAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLEKEFERFPNLKEAIKEAVQQLLEECREPAKEM 261 (295)
T ss_dssp -SSS-SCCH--HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788 99999999988888877777777777777666655444455554445544433 34444556666
Q ss_pred HHHHhcCc
Q 014152 205 LEHLLDDD 212 (430)
Q Consensus 205 l~~lLddD 212 (430)
|+++++.+
T Consensus 262 i~~li~~E 269 (295)
T PF01031_consen 262 IENLIDME 269 (295)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666554
No 115
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=26.23 E-value=3.8e+02 Score=27.09 Aligned_cols=32 Identities=9% Similarity=0.085 Sum_probs=15.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 342 DTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVV 378 (430)
Q Consensus 342 ~ted~i~~~Ld~~rN~lmk~~l~LTi~t~i~~~~tlI 378 (430)
+..+.++.....+--+++ +|.+|++++...+.
T Consensus 214 ~~~e~i~~ai~~~lrr~l-----~TslTt~l~llpL~ 245 (297)
T PRK13021 214 AIQEINNQAIVATFSRTM-----VTSGTTLMTVGALW 245 (297)
T ss_pred CHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 344555544444333332 55555555554443
No 116
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=26.18 E-value=4.5e+02 Score=23.75 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 014152 156 NEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDE 213 (430)
Q Consensus 156 ~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~ 213 (430)
+++...|..+..+|..+.+.++...|... +++.+..-++++..+..+++.+=.+..
T Consensus 11 ~d~y~aE~q~~~~l~~~~~~a~~~~L~~~--l~~h~~eT~~q~~rLe~~~~~lg~~p~ 66 (159)
T PF05974_consen 11 RDLYSAEKQLLKALPKLAEAASSPELKAA--LEEHLEETEQQIERLEQIFEALGADPS 66 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-SSHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTS-S-
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHccCCCc
Confidence 35557888899999999988888777543 777788888899998888888755443
No 117
>PRK08124 flagellar motor protein MotA; Validated
Probab=26.18 E-value=67 Score=31.81 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhhc--cccCCCccccccccCCchHHHHHHHHHHHHH
Q 014152 365 LTTATLVVSAFVVVAGIF--GMNINIELFDEHKSGMQEFLWTVGGGATGSI 413 (430)
Q Consensus 365 LTi~t~i~~~~tlIaGiF--GMNl~~~~~~~~~~~~~~F~~v~~~~~~~~v 413 (430)
.|++.++++++.++.|++ |=|+..- + ++.+|.+|+++++.+.+
T Consensus 4 ~tiiG~~~~~~~i~~g~~~~gg~~~~~-~-----~~~~~lIV~Ggt~~a~~ 48 (263)
T PRK08124 4 TTIIGLILGLIAVVVGMVVKGASLAVL-L-----NPAAILIIIVGTIAAVM 48 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHH-h-----hHHHHHHHHHHHHHHHH
Confidence 788899999999998877 4455432 2 46778888887765444
No 118
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=25.91 E-value=1.2e+02 Score=21.78 Aligned_cols=27 Identities=15% Similarity=0.377 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 014152 401 FLWTVGGGATGSIFLYVVAIAWCKHKRL 428 (430)
Q Consensus 401 F~~v~~~~~~~~v~i~~~~~~yfkrk~w 428 (430)
|.|...++.++++ +..++..+.++|++
T Consensus 6 yVW~sYg~t~~~l-~~l~~~~~~~~r~~ 32 (46)
T PF04995_consen 6 YVWSSYGVTALVL-AGLIVWSLRRRRRL 32 (46)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 4444433333322 33344445555543
No 119
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.85 E-value=5.2e+02 Score=27.24 Aligned_cols=26 Identities=4% Similarity=-0.055 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCcc
Q 014152 365 LTTATLVVSAFVVVAGIFGMNINIEL 390 (430)
Q Consensus 365 LTi~t~i~~~~tlIaGiFGMNl~~~~ 390 (430)
+.++-+++.+|.|..-+=|||-+.|.
T Consensus 176 v~~~Ll~~VvP~f~~if~~~~~~LP~ 201 (397)
T COG1459 176 VVLFLLIFVVPQFAEIFESLGAELPA 201 (397)
T ss_pred HHHHHHHHHhccHHHHHhhcCCCCcH
Confidence 44444455566665555556666543
No 120
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=25.83 E-value=2e+02 Score=33.52 Aligned_cols=9 Identities=0% Similarity=0.187 Sum_probs=5.6
Q ss_pred HHHH-HcCcC
Q 014152 421 AWCK-HKRLL 429 (430)
Q Consensus 421 ~yfk-rk~wl 429 (430)
+|+| .|+||
T Consensus 894 ~~~r~~~~~~ 903 (903)
T PRK15122 894 FYIRRFGQWF 903 (903)
T ss_pred HHhhhccccC
Confidence 4555 48886
No 121
>PRK14749 hypothetical protein; Provisional
Probab=25.59 E-value=1.8e+02 Score=19.42 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=12.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 014152 399 QEFLWTVGGGATGSIFLYVVAI 420 (430)
Q Consensus 399 ~~F~~v~~~~~~~~v~i~~~~~ 420 (430)
+.|-|+.|+.+++++.+.-+++
T Consensus 2 WYfaWiLG~~lAc~f~ilna~w 23 (30)
T PRK14749 2 WYLLWFVGILLMCSLSTLVLVW 23 (30)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888766655554433333
No 122
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=25.58 E-value=2.8e+02 Score=24.61 Aligned_cols=26 Identities=8% Similarity=0.263 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCC
Q 014152 362 GVMLTTATLVVSAFVVVAGIFGMNIN 387 (430)
Q Consensus 362 ~l~LTi~t~i~~~~tlIaGiFGMNl~ 387 (430)
.+.+.+++.++.....+.|.++++++
T Consensus 3 g~i~G~~~~l~~~~~~~~~~~~~~~~ 28 (163)
T PF13858_consen 3 GLIFGLILILFFLLSYLLGMHDIKYP 28 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccc
Confidence 34566677777777777777766554
No 123
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=25.38 E-value=6e+02 Score=24.27 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 014152 153 CLENEAKTLEQEAHPALDKLT 173 (430)
Q Consensus 153 ~Le~e~~~Le~~~~~~Ld~L~ 173 (430)
.|.+|+..|+.....+-.+..
T Consensus 100 rLkrELa~Le~~l~~~~~~~~ 120 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAE 120 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666555554443
No 124
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=25.28 E-value=7e+02 Score=24.99 Aligned_cols=74 Identities=19% Similarity=0.228 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCCh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 014152 141 VALEACLEAACSCLENEAKTLEQEAHPALDKLTS---KIST---LNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDED 214 (430)
Q Consensus 141 ~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~---~vs~---~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~D 214 (430)
+-+|+-|+.-...++.+.+.|+.....+--++.. +... .....+-+|...|...+.....+|+-|.+|-.-.+|
T Consensus 44 rE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDd 123 (333)
T KOG1853|consen 44 REIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDD 123 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 5677778887788887777777777665333321 1111 111223345555555555555556666665554444
No 125
>PRK02870 heat shock protein HtpX; Provisional
Probab=25.19 E-value=2.6e+02 Score=28.81 Aligned_cols=19 Identities=16% Similarity=-0.029 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 014152 365 LTTATLVVSAFVVVAGIFG 383 (430)
Q Consensus 365 LTi~t~i~~~~tlIaGiFG 383 (430)
...+.+.+.++.+++|+||
T Consensus 29 ~~~~~l~~~~g~~~~~~~~ 47 (336)
T PRK02870 29 ATYLAIFLFIGLLVDAIRI 47 (336)
T ss_pred HHHHHHHHHHHHHHhhhhc
Confidence 4444444555667777887
No 126
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.92 E-value=4.9e+02 Score=26.41 Aligned_cols=6 Identities=50% Similarity=0.634 Sum_probs=2.5
Q ss_pred HHHHHH
Q 014152 63 ELQSRI 68 (430)
Q Consensus 63 ~L~~rL 68 (430)
+|.+++
T Consensus 79 EL~~~I 84 (325)
T PF08317_consen 79 ELKKYI 84 (325)
T ss_pred HHHHHH
Confidence 444444
No 127
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=24.83 E-value=1.6e+02 Score=22.45 Aligned_cols=34 Identities=15% Similarity=0.444 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhHhhhh
Q 014152 186 QIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMY 219 (430)
Q Consensus 186 ~lK~~L~~l~~rv~~vr~~l~~lLddD~Dm~~m~ 219 (430)
.++..+..++...+.+++.++++=++=.|+..+|
T Consensus 11 ~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 11 RIESSINTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555566
No 128
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=24.66 E-value=1.1e+03 Score=27.11 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 014152 187 IKSRLVAITGRVQKVRDELEHLLDD 211 (430)
Q Consensus 187 lK~~L~~l~~rv~~vr~~l~~lLdd 211 (430)
++....+|+..++.+|.-|...+.+
T Consensus 265 L~~~~~qL~~~L~~vK~~L~~~l~~ 289 (806)
T PF05478_consen 265 LQEYQSQLRDGLRGVKRDLNNTLQD 289 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444555555555555555554
No 129
>PRK08990 flagellar motor protein PomA; Reviewed
Probab=24.46 E-value=73 Score=31.46 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhhc-cccCCCccccccccCCchHHHHHHHHHHHHH
Q 014152 365 LTTATLVVSAFVVVAGIF-GMNINIELFDEHKSGMQEFLWTVGGGATGSI 413 (430)
Q Consensus 365 LTi~t~i~~~~tlIaGiF-GMNl~~~~~~~~~~~~~~F~~v~~~~~~~~v 413 (430)
.|++.++++.+.+++|++ |=|+.. ++ ++++|.+++++++.+.+
T Consensus 4 ~tiiGli~~~~~i~~g~~~gg~~~~-l~-----~~~~~lIV~GGt~ga~l 47 (254)
T PRK08990 4 ATLIGLIGAFAFVIMAMVLGGGIGM-FV-----DVPSILIVFGGSLFVVL 47 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHH-Hh-----CHHHHHHHHHHHHHHHH
Confidence 788899999999998877 223322 23 56778888887766554
No 130
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=24.39 E-value=50 Score=26.65 Aligned_cols=26 Identities=19% Similarity=-0.003 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Q 014152 402 LWTVGGGATGSIFLYVVAIAWCKHKR 427 (430)
Q Consensus 402 ~~v~~~~~~~~v~i~~~~~~yfkrk~ 427 (430)
-.++.+..++|++..+..++.||||+
T Consensus 33 aVviPl~L~LCiLvl~yai~~fkrkG 58 (74)
T PF11857_consen 33 AVVIPLVLLLCILVLIYAIFQFKRKG 58 (74)
T ss_pred EEeHHHHHHHHHHHHHHHhheeeecC
Confidence 34445666777776667777799886
No 131
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=24.35 E-value=96 Score=28.08 Aligned_cols=28 Identities=14% Similarity=-0.089 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 014152 401 FLWTVGGGATGSIFLYVVAIAWCKHKRL 428 (430)
Q Consensus 401 F~~v~~~~~~~~v~i~~~~~~yfkrk~w 428 (430)
.++++++++++++++.++++++.-||=|
T Consensus 117 ~~~~i~~~i~g~ll~i~~giy~~~r~~~ 144 (145)
T PF10661_consen 117 ISPTILLSIGGILLAICGGIYVVLRKVW 144 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444443333333333333433
No 132
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=24.30 E-value=8.7e+02 Score=25.73 Aligned_cols=20 Identities=5% Similarity=0.126 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 014152 325 QIDGTLNKLSTLREYVDDTE 344 (430)
Q Consensus 325 ~id~i~~~l~~l~e~i~~te 344 (430)
...++.+.+++.+..|.-+|
T Consensus 299 RaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 299 RARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555
No 133
>PRK07668 hypothetical protein; Validated
Probab=24.19 E-value=7.1e+02 Score=24.70 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=14.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q 014152 311 DVEELEMLLEAYFVQIDGTLNK 332 (430)
Q Consensus 311 ~~ee~E~LLE~Y~~~id~i~~~ 332 (430)
..+|.|.+++.+..|+-+-.++
T Consensus 23 seeeieeiL~Ei~~hLlEgQk~ 44 (254)
T PRK07668 23 KEEDIESFLEDAELHLIEGEKD 44 (254)
T ss_pred CHHHHHHHHHHHHHHHHHHHHc
Confidence 3577788888888776554433
No 134
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=23.49 E-value=1e+02 Score=30.01 Aligned_cols=24 Identities=17% Similarity=0.051 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 401 FLWTVGGGATGSIFLYVVAIAWCK 424 (430)
Q Consensus 401 F~~v~~~~~~~~v~i~~~~~~yfk 424 (430)
.+|..+++++++++.|+.|+++.+
T Consensus 215 s~wf~~~miI~v~~sFVsMiliiq 238 (244)
T KOG2678|consen 215 SYWFYITMIIFVILSFVSMILIIQ 238 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666666666666644
No 135
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.45 E-value=5.5e+02 Score=23.70 Aligned_cols=73 Identities=23% Similarity=0.190 Sum_probs=44.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 014152 134 KVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQK-VRDELEHL 208 (430)
Q Consensus 134 ~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~-vr~~l~~l 208 (430)
...|+--++||++.+-+- .++.-.....+.....+++|+..-....+ .+.++|+-|..+..-+.. +|+.|-++
T Consensus 76 kpyPWt~~~L~aa~el~e-e~eeLs~deke~~~~sl~dL~~d~PkT~v-A~~rfKk~~~K~g~~v~~~~~dIlVdv 149 (158)
T PF10083_consen 76 KPYPWTENALEAANELIE-EDEELSPDEKEQFKESLPDLTKDTPKTKV-AATRFKKILSKAGSIVGDAIRDILVDV 149 (158)
T ss_pred CCCchHHHHHHHHHHHHH-HhhcCCHHHHHHHHhhhHHHhhcCCccHH-HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 457999999999877665 44433444455566677777765333333 567788777666554432 44444443
No 136
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=23.34 E-value=1.7e+02 Score=20.99 Aligned_cols=19 Identities=21% Similarity=-0.008 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHc
Q 014152 408 GATGSIFLYVVAIAWCKHK 426 (430)
Q Consensus 408 ~~~~~v~i~~~~~~yfkrk 426 (430)
+++.++.+.+..++||.||
T Consensus 18 vI~~~igm~~~~~~~F~~k 36 (42)
T PF11346_consen 18 VIVFTIGMGVFFIRYFIRK 36 (42)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444455566677766
No 137
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=23.22 E-value=4.2e+02 Score=21.71 Aligned_cols=22 Identities=23% Similarity=0.100 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 351 LDDKQNHLLQMGVMLTTATLVVSAF 375 (430)
Q Consensus 351 Ld~~rN~lmk~~l~LTi~t~i~~~~ 375 (430)
|-.+||++.-. ++++.+++-.+
T Consensus 10 L~r~r~r~~~~---l~~i~l~~y~~ 31 (91)
T PF04341_consen 10 LVRRRRRLAWP---LSAIFLVLYFG 31 (91)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHH
Confidence 34456665444 55544444333
No 138
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=23.09 E-value=7.8e+02 Score=25.36 Aligned_cols=7 Identities=14% Similarity=0.017 Sum_probs=3.2
Q ss_pred HHHHHHh
Q 014152 63 ELQSRIL 69 (430)
Q Consensus 63 ~L~~rL~ 69 (430)
+..++|+
T Consensus 30 ~a~~~L~ 36 (399)
T PRK10573 30 LLYQALQ 36 (399)
T ss_pred HHHHHHH
Confidence 3444444
No 139
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=23.06 E-value=1.5e+02 Score=26.22 Aligned_cols=52 Identities=23% Similarity=0.413 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q 014152 365 LTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRLLE 430 (430)
Q Consensus 365 LTi~t~i~~~~tlIaGiFGMNl~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~~~~yfkrk~wl~ 430 (430)
.++.++++..+.++.-+.|+=+...- + +++..+.| ++.+..-.|+++|+|+.
T Consensus 6 vAlLa~C~l~G~~~GdlLG~llGV~a------N-------VGGVGiAM-lLLI~~~~~l~k~g~l~ 57 (125)
T PF03817_consen 6 VALLAICTLAGVFLGDLLGALLGVKA------N-------VGGVGIAM-LLLIFARLWLQKKGLLS 57 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCc------c-------cccHHHHH-HHHHHHHHHHHHcCCCC
Confidence 56778888888888888888665421 1 12233333 33445677889999874
No 140
>PRK09109 motC flagellar motor protein; Reviewed
Probab=23.02 E-value=84 Score=30.81 Aligned_cols=43 Identities=19% Similarity=0.371 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhhc--cccCCCccccccccCCchHHHHHHHHHHHHH
Q 014152 365 LTTATLVVSAFVVVAGIF--GMNINIELFDEHKSGMQEFLWTVGGGATGSI 413 (430)
Q Consensus 365 LTi~t~i~~~~tlIaGiF--GMNl~~~~~~~~~~~~~~F~~v~~~~~~~~v 413 (430)
.|++.++++.+.++.|++ |=|+..- + ++++|.+++++++.+.+
T Consensus 4 ~t~iG~~~~~~~v~~~~~~~gg~~~~~-~-----~~~~~lIV~Ggt~~a~~ 48 (246)
T PRK09109 4 LSLIGLILAFVAIIGGQVLEGGHLGSL-L-----NGPAFLIVIGGTLGAVL 48 (246)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHH-h-----hHHHHHHHHHHHHHHHH
Confidence 788889999999998876 5566542 3 56778888887765444
No 141
>PF09583 Phageshock_PspG: Phage shock protein G (Phageshock_PspG); InterPro: IPR014318 This protein previously was designated yjbO in Escherichia coli. It is found only in genomes that have the phage shock operon (psp), but it is only rarely encoded near other psp genes. The psp regulon is upregulated in response to a number of stress conditions, including ethanol, expression of the filamentous phage secretin protein IV and other secretins and heat shock.
Probab=23.00 E-value=82 Score=24.74 Aligned_cols=15 Identities=33% Similarity=0.831 Sum_probs=11.0
Q ss_pred HHHHHHhhccccCCC
Q 014152 374 AFVVVAGIFGMNINI 388 (430)
Q Consensus 374 ~~tlIaGiFGMNl~~ 388 (430)
...+++|.||+=++.
T Consensus 33 ~vm~l~Gm~~lviKL 47 (65)
T PF09583_consen 33 AVMFLGGMFGLVIKL 47 (65)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455678888887775
No 142
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=22.98 E-value=2.4e+02 Score=25.44 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCC
Q 014152 362 GVMLTTATLVVSAFVVVAGIFGMNINI 388 (430)
Q Consensus 362 ~l~LTi~t~i~~~~tlIaGiFGMNl~~ 388 (430)
.|.|..++++++.. +-+|.+.++.
T Consensus 29 kL~lg~~a~~iA~~---a~~~d~~~~f 52 (162)
T PF06703_consen 29 KLALGYLAVIIAGF---AFFYDYKYPF 52 (162)
T ss_pred HHHHHHHHHHHHHH---HHHhhhcCCC
Confidence 33455555555444 4567776654
No 143
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=22.87 E-value=4e+02 Score=27.95 Aligned_cols=58 Identities=14% Similarity=0.316 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 148 EAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEH 207 (430)
Q Consensus 148 ~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~ 207 (430)
..+...|+.+...++..+..+.+.|..+. ..-.++..+++.+..++.++..+.+.+..
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~--k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP--KKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677777788888888888777776654 33345667777777777777776665543
No 144
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=22.79 E-value=3.9e+02 Score=23.12 Aligned_cols=21 Identities=14% Similarity=0.463 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014152 182 ERVRQIKSRLVAITGRVQKVR 202 (430)
Q Consensus 182 erlr~lK~~L~~l~~rv~~vr 202 (430)
+.|..|+.++.+|+.++..+.
T Consensus 96 ~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 96 EEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345566666777777666654
No 145
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=22.78 E-value=6.4e+02 Score=23.67 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCchhHhhhhhhHHHh
Q 014152 184 VRQIKSRLVAITGRVQKVRDELEHLL-DDDEDMAEMYLTEKLM 225 (430)
Q Consensus 184 lr~lK~~L~~l~~rv~~vr~~l~~lL-ddD~Dm~~m~Lt~~~~ 225 (430)
-..+++++......+....+-...-| ..++|++.-+|.++..
T Consensus 53 ~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~ 95 (221)
T PF04012_consen 53 QKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKAD 95 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566667777777777666666666 4477888888887764
No 146
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=22.73 E-value=3.3e+02 Score=28.73 Aligned_cols=28 Identities=7% Similarity=0.054 Sum_probs=16.1
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHcCcC
Q 014152 402 LWTVGGGAT-GSIFLYVVAIAWCKHKRLL 429 (430)
Q Consensus 402 ~~v~~~~~~-~~v~i~~~~~~yfkrk~wl 429 (430)
|+.+.+.++ ..++..++++...|+.||.
T Consensus 186 w~~~~~lL~l~l~icl~~l~glar~Sk~~ 214 (406)
T PF04906_consen 186 WLAYLGLLILDLVICLLGLLGLARQSKCL 214 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcce
Confidence 444443333 2334445677788999884
No 147
>PRK13682 hypothetical protein; Provisional
Probab=22.63 E-value=76 Score=23.81 Aligned_cols=17 Identities=12% Similarity=0.456 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhhccc
Q 014152 368 ATLVVSAFVVVAGIFGM 384 (430)
Q Consensus 368 ~t~i~~~~tlIaGiFGM 384 (430)
++++|.+.++|+|+||.
T Consensus 4 waliFliiA~iA~~lGF 20 (51)
T PRK13682 4 WAIIFLVIALIAAVLGF 20 (51)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 57888999999999996
No 148
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=22.49 E-value=3.2e+02 Score=24.95 Aligned_cols=18 Identities=33% Similarity=0.648 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhhccccC
Q 014152 369 TLVVSAFVVVAGIFGMNI 386 (430)
Q Consensus 369 t~i~~~~tlIaGiFGMNl 386 (430)
-+++.++..++|+||.|=
T Consensus 82 lLlivIgivvaGvygi~k 99 (169)
T COG5130 82 LLLIVIGIVVAGVYGIRK 99 (169)
T ss_pred HHHHHHhhhhheeeehhh
Confidence 345677888999999984
No 149
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=22.47 E-value=2.1e+02 Score=22.33 Aligned_cols=17 Identities=12% Similarity=0.427 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014152 184 VRQIKSRLVAITGRVQK 200 (430)
Q Consensus 184 lr~lK~~L~~l~~rv~~ 200 (430)
+..+++.+..|..|++.
T Consensus 34 I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 34 IDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 150
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=22.18 E-value=5.2e+02 Score=30.20 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 014152 364 MLTTATLVVSAFVVVA 379 (430)
Q Consensus 364 ~LTi~t~i~~~~tlIa 379 (430)
.+|.+|++++...+..
T Consensus 777 i~TslTTll~llpL~l 792 (855)
T PRK14726 777 VLTSATTLLALLALYL 792 (855)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3677777776666653
No 151
>PF00746 Gram_pos_anchor: Gram positive anchor; InterPro: IPR019948 Viruses, parasites and bacteria are covered in protein and sugar molecules that help them gain entry into a host by counteracting the host's defences. One such molecule is the M protein produced by certain streptococcal bacteria. M proteins embody a motif that is now known to be shared by many Gram-positive bacterial surface proteins. The motif includes a conserved hexapeptide, which precedes a hydrophobic C-terminal membrane anchor, which itself precedes a cluster of basic residues [, ]. This structure is represented in the following schematic representation: +--------------------------------------------+-+--------+-+ | Variable length extracellular domain |H| Anchor |B| +--------------------------------------------+-+--------+-+ 'H': conserved hexapeptide. 'B': cluster of basic residues. It has been proposed that this hexapeptide sequence is responsible for a post- translational modification necessary for the proper anchoring of the proteins which bear it, to the cell wall.; PDB: 2XTL_B 3QDH_A 2Y1V_C 2X9X_A 3RPK_A 2X9W_A 2X9Y_A.
Probab=22.18 E-value=29 Score=23.75 Aligned_cols=12 Identities=17% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHc
Q 014152 415 LYVVAIAWCKHK 426 (430)
Q Consensus 415 i~~~~~~yfkrk 426 (430)
+..+.++++|||
T Consensus 28 ~~~~~~~~~krr 39 (39)
T PF00746_consen 28 LLGGGLLLVKRR 39 (39)
T ss_dssp ------------
T ss_pred HHHHHHHheecC
Confidence 334556666654
No 152
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=22.04 E-value=3.1e+02 Score=27.05 Aligned_cols=18 Identities=6% Similarity=0.132 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhccccCCC
Q 014152 371 VVSAFVVVAGIFGMNINI 388 (430)
Q Consensus 371 i~~~~tlIaGiFGMNl~~ 388 (430)
.++++++++.+|+|-...
T Consensus 49 ~i~~~~Ll~~v~t~~~~~ 66 (284)
T PF12805_consen 49 TIGFATLLVAVYTMAGPS 66 (284)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 345567777788886654
No 153
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=21.52 E-value=69 Score=32.19 Aligned_cols=43 Identities=26% Similarity=0.245 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhhc--cccCCCccccccccCCchHHHHHHHHHHHHH
Q 014152 365 LTTATLVVSAFVVVAGIF--GMNINIELFDEHKSGMQEFLWTVGGGATGSI 413 (430)
Q Consensus 365 LTi~t~i~~~~tlIaGiF--GMNl~~~~~~~~~~~~~~F~~v~~~~~~~~v 413 (430)
+|++.++++.+.+++|+. |=|+..- + ++++|.+++++++.+.+
T Consensus 2 ~tliGli~~~~~v~~g~~l~Gg~~~~l-~-----~~~~~lIV~Ggtlga~l 46 (282)
T TIGR03818 2 LKIIGLVVVLGCVFGGYLLAGGHLAAL-W-----QPAELLIIGGAAIGAFI 46 (282)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCChHHH-H-----HHHHHHHHHHHHHHHHH
Confidence 688888899998888876 5555432 2 46778888877765443
No 154
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=21.31 E-value=54 Score=32.95 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=15.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 014152 399 QEFLWTVGGGATGSIFLYVVAIAWCKHK 426 (430)
Q Consensus 399 ~~F~~v~~~~~~~~v~i~~~~~~yfkrk 426 (430)
..-.+++|+++++.++|.++.|++.|||
T Consensus 271 ~~vPIaVG~~La~lvlivLiaYli~Rrr 298 (306)
T PF01299_consen 271 DLVPIAVGAALAGLVLIVLIAYLIGRRR 298 (306)
T ss_pred chHHHHHHHHHHHHHHHHHHhheeEecc
Confidence 3445556655555555555555555554
No 155
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=21.26 E-value=6.4e+02 Score=23.05 Aligned_cols=38 Identities=8% Similarity=0.016 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 014152 312 VEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINI 349 (430)
Q Consensus 312 ~ee~E~LLE~Y~~~id~i~~~l~~l~e~i~~ted~i~~ 349 (430)
.+.++.-++.|-.+.+.+-.+.+.+....+..+....-
T Consensus 68 ~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~ 105 (157)
T PF14235_consen 68 RAAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDH 105 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 56677778888888888888877777766666554433
No 156
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=21.19 E-value=1.4e+02 Score=25.40 Aligned_cols=28 Identities=7% Similarity=-0.012 Sum_probs=19.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 398 MQEFLWTVGGGATGSIFLYVVAIAWCKH 425 (430)
Q Consensus 398 ~~~F~~v~~~~~~~~v~i~~~~~~yfkr 425 (430)
||..+.++.++++.++.++++++++.|+
T Consensus 17 PWeIfLItLasVvvavGl~aGLfFcvR~ 44 (106)
T PF14654_consen 17 PWEIFLITLASVVVAVGLFAGLFFCVRN 44 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5556666667777777777777777754
No 157
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=21.12 E-value=2.8e+02 Score=29.76 Aligned_cols=58 Identities=5% Similarity=-0.194 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCccccccccCCchHHHHHHHHHHHHHHHHHH-HHHHHHHcCcCC
Q 014152 360 QMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVV-AIAWCKHKRLLE 430 (430)
Q Consensus 360 k~~l~LTi~t~i~~~~tlIaGiFGMNl~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~-~~~yfkrk~wl~ 430 (430)
++-++++++++...+.++..+.|+-. +..+|....+++.++.-++- .+-|.++++|++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~l~~~~g~~~~~p~~~l~~~~~~~~~~~~ 166 (495)
T PRK11644 108 TLLLQGAALTAAALLQSLPWLWHGKE-------------GWNALLLTLTGGLTLAPTCLLFWHYLAQNTWLP 166 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-------------hHHHHHHHHhchHHHHHHHHHHHHHHhhccccc
Confidence 33344666666666666666766531 22455555554444444443 333778888864
No 158
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=20.98 E-value=2.1e+02 Score=26.02 Aligned_cols=42 Identities=29% Similarity=0.363 Sum_probs=34.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 014152 309 HLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIM 350 (430)
Q Consensus 309 ~~~~ee~E~LLE~Y~~~id~i~~~l~~l~e~i~~ted~i~~~ 350 (430)
..+-+.+|.+|..++++++.+...++.+++.++..++.....
T Consensus 38 g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (151)
T PF14584_consen 38 GKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNC 79 (151)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334457899999999999999999999999888887766544
No 159
>PF02392 Ycf4: Ycf4; InterPro: IPR003359 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA (IPR005137 from INTERPRO) [], Ycf3 [, ], and Ycf4 []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. ; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009579 thylakoid, 0016021 integral to membrane
Probab=20.53 E-value=2.2e+02 Score=26.85 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCC
Q 014152 364 MLTTATLVVSAFVVVAGIFGMNINI 388 (430)
Q Consensus 364 ~LTi~t~i~~~~tlIaGiFGMNl~~ 388 (430)
.+.+.+++|.... +.++||+|+-.
T Consensus 24 ii~~G~lGFll~G-~sSYl~~nll~ 47 (180)
T PF02392_consen 24 IIFLGGLGFLLVG-ISSYLGKNLLP 47 (180)
T ss_pred HHHHhhHHHHHhH-HHHHhCCCccc
Confidence 3556666665543 47899999853
No 160
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=20.37 E-value=4.9e+02 Score=21.35 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHh
Q 014152 180 NLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMA 216 (430)
Q Consensus 180 ~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~Dm~ 216 (430)
....|...+..+..-..++....+.++++|+..++..
T Consensus 73 ~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~~~~e 109 (127)
T smart00502 73 KLKVLEQQLESLTQKQEKLSHAINFTEEALNSGDPTE 109 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence 3445555566666666666667777778887655543
No 161
>PF06417 DUF1077: Protein of unknown function (DUF1077); InterPro: IPR009445 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=20.30 E-value=2.1e+02 Score=25.37 Aligned_cols=28 Identities=14% Similarity=0.304 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCcccc
Q 014152 365 LTTATLVVSAFVVVAGIFGMNINIELFD 392 (430)
Q Consensus 365 LTi~t~i~~~~tlIaGiFGMNl~~~~~~ 392 (430)
++|..++.++..-|-++|++|=...+++
T Consensus 44 FsIm~v~m~~~~Pikai~~~~~~F~~~~ 71 (124)
T PF06417_consen 44 FSIMMVGMLLWNPIKAIFSVNQAFKPFE 71 (124)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888899999999999999996544454
Done!