Query 014152
Match_columns 430
No_of_seqs 202 out of 1401
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 06:24:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rkg_A Magnesium transporter M 100.0 4.8E-56 1.7E-60 431.0 22.5 216 1-358 41-261 (261)
2 4ev6_A Magnesium transport pro 100.0 1.4E-26 4.9E-31 232.6 28.0 230 34-429 110-339 (339)
3 2iub_A CORA, divalent cation t 100.0 2.7E-27 9.3E-32 240.0 21.7 230 33-429 134-363 (363)
4 4egw_A Magnesium transport pro 99.0 2.7E-08 9.3E-13 96.7 18.7 171 34-360 110-280 (280)
5 3nvo_A Zinc transport protein 98.3 1.2E-05 3.9E-10 77.0 14.2 115 33-213 104-218 (264)
6 3ck6_A Putative membrane trans 98.2 1.6E-05 5.4E-10 75.6 14.2 156 37-359 97-252 (252)
7 2bbh_A Divalent cation transpo 97.1 0.0011 3.9E-08 63.2 8.1 118 34-213 126-243 (269)
8 2hn1_A CORA, magnesium and cob 96.8 0.0018 6E-08 61.9 6.7 116 34-213 128-243 (266)
9 3swf_A CGMP-gated cation chann 74.9 12 0.0004 29.1 7.3 49 147-203 5-53 (74)
10 2ks1_B Epidermal growth factor 66.9 6.5 0.00022 27.5 3.8 15 413-427 25-39 (44)
11 2l2t_A Receptor tyrosine-prote 66.7 8.3 0.00029 26.9 4.4 14 414-427 25-38 (44)
12 2jwa_A Receptor tyrosine-prote 64.7 10 0.00034 26.5 4.4 20 409-428 21-40 (44)
13 2iub_A CORA, divalent cation t 60.1 1.3E+02 0.0045 29.3 19.4 97 318-427 258-358 (363)
14 3v86_A De novo design helix; c 59.5 18 0.00061 21.9 4.2 25 184-208 2-26 (27)
15 3swy_A Cyclic nucleotide-gated 56.4 34 0.0012 24.1 6.0 44 147-198 3-46 (46)
16 2k1k_A Ephrin type-A receptor 56.1 8.7 0.0003 25.9 2.8 9 418-426 29-37 (38)
17 4ev6_A Magnesium transport pro 51.6 1.7E+02 0.0059 28.1 17.6 96 326-428 239-335 (339)
18 3s84_A Apolipoprotein A-IV; fo 48.3 1.8E+02 0.0063 27.5 12.2 30 311-340 111-141 (273)
19 3p8c_D Wiskott-aldrich syndrom 45.1 48 0.0016 31.9 7.2 58 141-206 24-81 (279)
20 2j69_A Bacterial dynamin-like 41.6 3.5E+02 0.012 28.8 14.7 30 182-211 366-395 (695)
21 2knc_A Integrin alpha-IIB; tra 34.6 38 0.0013 24.6 3.6 7 421-427 37-43 (54)
22 1txp_A HnRNP C, heterogeneous 32.5 46 0.0016 20.9 3.1 24 185-208 2-25 (28)
23 2k21_A Potassium voltage-gated 32.4 36 0.0012 29.1 3.6 31 397-427 49-79 (138)
24 1vcs_A Vesicle transport throu 31.3 84 0.0029 25.3 5.6 24 179-202 71-94 (102)
25 3ghg_A Fibrinogen alpha chain; 31.0 4.7E+02 0.016 27.3 12.3 31 322-352 129-159 (562)
26 2k1a_A Integrin alpha-IIB; sin 30.3 78 0.0027 21.7 4.4 7 401-407 10-16 (42)
27 2l8s_A Integrin alpha-1; trans 29.9 45 0.0015 24.2 3.2 7 421-427 34-40 (54)
28 4dnd_A Syntaxin-10, SYN10; str 28.4 2.7E+02 0.0091 23.5 9.3 64 139-205 64-128 (130)
29 1iij_A ERBB-2 receptor protein 27.5 25 0.00087 23.3 1.4 17 411-427 19-35 (35)
30 1nfn_A Apolipoprotein E3; lipi 27.2 99 0.0034 27.7 5.9 71 141-212 58-129 (191)
31 2knc_B Integrin beta-3; transm 26.3 53 0.0018 25.5 3.4 24 401-424 10-33 (79)
32 3hhm_B NISH2 P85alpha; PI3KCA, 25.7 3.5E+02 0.012 26.8 10.1 66 141-207 161-230 (373)
33 1t3j_A Mitofusin 1; coiled coi 25.0 2.7E+02 0.0093 22.4 9.4 60 134-202 32-91 (96)
34 3zcc_A HAMP, osmolarity sensor 24.9 2.1E+02 0.0071 21.3 6.8 35 137-171 36-70 (114)
35 3s8f_C Cytochrome C oxidase po 24.8 1.3E+02 0.0044 19.8 4.4 28 397-424 4-31 (34)
36 2ca5_A MXIH; transport protein 24.1 2.2E+02 0.0076 22.4 6.5 65 147-211 12-81 (85)
37 2gyq_A YCFI, putative structur 24.1 3.7E+02 0.013 23.6 9.1 53 157-211 23-75 (173)
38 1deq_A Fibrinogen (alpha chain 23.4 2.3E+02 0.008 28.3 8.1 51 144-206 108-158 (390)
39 1skv_A ORF D-63, hypothetical 23.2 2.4E+02 0.0083 21.2 9.2 49 144-192 4-53 (69)
40 1wlx_A Alpha-actinin 4; three- 23.2 3.4E+02 0.012 22.9 9.1 64 147-210 10-73 (129)
41 1lrz_A FEMA, factor essential 22.2 3.4E+02 0.012 26.8 9.5 59 148-206 246-305 (426)
42 2yiu_B Cytochrome C1, heme pro 22.2 49 0.0017 31.6 2.9 15 414-428 239-253 (263)
43 3aqp_A Probable secdf protein- 22.0 4.2E+02 0.015 28.5 10.7 10 419-428 719-728 (741)
44 3mq9_A Bone marrow stromal ant 21.7 2.4E+02 0.0081 28.1 8.2 25 183-207 444-468 (471)
45 3onj_A T-snare VTI1; helix, HA 20.8 3.1E+02 0.011 21.6 8.2 20 182-201 72-92 (97)
46 3cx5_D Cytochrome C1, heme pro 20.7 56 0.0019 30.9 2.9 14 415-428 218-231 (248)
47 3r2p_A Apolipoprotein A-I; amp 20.3 4.3E+02 0.015 23.0 9.1 34 143-176 98-131 (185)
48 3iyk_A VP5; icosahedral virus; 20.2 6.9E+02 0.024 25.9 11.0 77 138-215 146-227 (526)
No 1
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-56 Score=431.04 Aligned_cols=216 Identities=31% Similarity=0.459 Sum_probs=198.4
Q ss_pred CccCCCCCCcccccCCCC-CCCceeeecCCeEEeeccccchheecCeeeeecCCCCCch----hHHHHHHHHHhcccccc
Q 014152 1 MRRTGLPARDLRILDPLL-SYPSTVLGRERAIVINLEHIKAIITAQEVLLMNSRDPSVV----PFVEELQSRILCHYQAT 75 (430)
Q Consensus 1 ~r~~gL~~RDLR~ldp~~-s~pssIl~R~~aIlVnle~iraII~~d~Vllf~~~~~~~~----~f~~~L~~rL~~~~~~~ 75 (430)
||++||+|||||+|||++ +++|+|++|++||||||+||||||++|+|++||+.++.+. .|+++|+.|+...
T Consensus 41 ~~~~~L~~RDLR~ld~~~~~~~PsIl~R~~aIlvnL~~irAII~~d~Vllfd~~~~~~~~~~~~f~~~l~~~l~~~---- 116 (261)
T 3rkg_A 41 LTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVYVFDTTNPSAAAKLSVLMYDLESKLSST---- 116 (261)
T ss_dssp HHHTTCCGGGGGGTSSCCSSCCCEEEECSSCEEEEETTEEEEECSSCEEEECCSCHHHHHHHHHHHHHHHHHHHCS----
T ss_pred HHHcCCChhhHHHhcccccCCCceEEecCCeEEEechhceEEEEcceEEEEcCCCchhhhhHHHHHHHHHHHhccC----
Confidence 689999999999999986 5667899999999999999999999999999999887665 5999999999631
Q ss_pred cccccCCCCCccccccCCCCCCCCCCCCCCCCCCCCCccchhhhhhcccccccccCCCCCCcchHHHHHHHHHHHHHHHH
Q 014152 76 KSQINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFEDENEERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLE 155 (430)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lPFEl~aLE~~L~~~~~~Le 155 (430)
..+.+|||||||||||.++|+.|+
T Consensus 117 --------------------------------------------------------~~~~lPFEfraLEa~L~~v~~~Le 140 (261)
T 3rkg_A 117 --------------------------------------------------------KNNSQFYEHRALESIFINVMSALE 140 (261)
T ss_dssp --------------------------------------------------------SCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------------CCCCCChHHHHHHHHHHHHHHHHH
Confidence 123689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHhhhhhhHHHhhhhhcccCCC
Q 014152 156 NEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTSS 235 (430)
Q Consensus 156 ~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~Dm~~m~Lt~~~~~~~~~~~~~~ 235 (430)
++++.++..++++|++|++++++.+|++|+..|++|+++.+||+.||++|+++||||+||++||||++..
T Consensus 141 ~e~~~l~~~~~~~L~~L~~~i~~~~L~~Ll~~~k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~~---------- 210 (261)
T 3rkg_A 141 TDFKLHSQICIQILNDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKS---------- 210 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCCC----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999997631
Q ss_pred CCCCCccchHHhhhhccccchhhhhhhhcCCCCCccccccccccccccccccccccccCCCCccccccccccCcccHHHH
Q 014152 236 INERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEADFQNTENIHDNLFTQNIHSRASHGTRTSTTHSAISKHLDVEEL 315 (430)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~ 315 (430)
..++|+|+
T Consensus 211 ------------------------------------------------------------------------~~~d~eEl 218 (261)
T 3rkg_A 211 ------------------------------------------------------------------------PKDNFSDL 218 (261)
T ss_dssp ------------------------------------------------------------------------TTSCCHHH
T ss_pred ------------------------------------------------------------------------CccchHHH
Confidence 35689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHH
Q 014152 316 EMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHL 358 (430)
Q Consensus 316 E~LLE~Y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld~~rN~l 358 (430)
|||||+||+|+|+++++++.++++|++|||+|++.||++||++
T Consensus 219 EmLLE~Y~~q~d~~~~~~~~L~~~I~~TEe~i~i~LD~~RN~L 261 (261)
T 3rkg_A 219 EMLIETYYTQCDEYVQQSESLIQDIKSTEEIVNIILDANRNSL 261 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 9999999999999999999999999999999999999999985
No 2
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=1.4e-26 Score=232.59 Aligned_cols=230 Identities=17% Similarity=0.155 Sum_probs=176.6
Q ss_pred eccccchheecCeeeeecCCCCCchhHHHHHHHHHhcccccccccccCCCCCccccccCCCCCCCCCCCCCCCCCCCCCc
Q 014152 34 NLEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKSQINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFE 113 (430)
Q Consensus 34 nle~iraII~~d~Vllf~~~~~~~~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 113 (430)
..++|..+++.+.++.+...+. +.++.+++++....... .
T Consensus 110 ~~~~v~i~l~~~~lITv~~~~~---~~~~~~~~~~~~~~~~~----~--------------------------------- 149 (339)
T 4ev6_A 110 TTTSLGIYIKNNLLLTIHSDKI---KAIGRLHKLISTKKPRI----V--------------------------------- 149 (339)
T ss_dssp CCCCCEEEEETTEEEEEESSCC---HHHHHHHHHSSSSSSCC----C---------------------------------
T ss_pred ceEEEEEEEECCeeEEeecCCc---chhHHHHHHHHcCCCcc----c---------------------------------
Confidence 3567899999999999987654 67788888875321000 0
Q ss_pred cchhhhhhcccccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHH
Q 014152 114 DENEERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVA 193 (430)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~ 193 (430)
...+ |- .+|-++++.++..+..-+..+++.+..+.+.+..+.+...++++..+|+.+..
T Consensus 150 ---------------~~~~----~~--~ll~~lld~ivd~~~~~l~~l~~~i~~lE~~l~~~~~~~~l~~l~~lrr~l~~ 208 (339)
T 4ev6_A 150 ---------------FERG----IG--FLLYHILNEITRSYSRILMNLEDELEELEDKLLAGYDREVMEKILGLRKTLVY 208 (339)
T ss_dssp ---------------CCSC----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHH
T ss_pred ---------------cccC----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 0011 21 24444555555555555558899998888888888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCchhHhhhhhhHHHhhhhhcccCCCCCCCCccchHHhhhhccccchhhhhhhhcCCCCCcccc
Q 014152 194 ITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTSSINERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEAD 273 (430)
Q Consensus 194 l~~rv~~vr~~l~~lLddD~Dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (430)
+++.+.+.++++..+...+.. .++
T Consensus 209 lrr~l~~~~~vl~~L~~~~~~----~~~---------------------------------------------------- 232 (339)
T 4ev6_A 209 FHKSLIANRDVLVLLKRKYLP----ITT---------------------------------------------------- 232 (339)
T ss_dssp HHHHHHHHHHHHHHHHHSCBT----TBC----------------------------------------------------
T ss_pred HHHHhhhhHHHHHHHhhcccc----ccc----------------------------------------------------
Confidence 999999999999887654322 000
Q ss_pred ccccccccccccccccccccCCCCccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhH
Q 014152 274 FQNTENIHDNLFTQNIHSRASHGTRTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDD 353 (430)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~E~LLE~Y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld~ 353 (430)
++....++....++..+.+.++.+++.+.++.|.+...+++
T Consensus 233 ---------------------------------------~~~~~~l~dv~~~~~~l~e~~~~~~e~l~~l~d~~~s~is~ 273 (339)
T 4ev6_A 233 ---------------------------------------KEDRENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLENI 273 (339)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223445555677888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Q 014152 354 KQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRLL 429 (430)
Q Consensus 354 ~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMNl~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~~~~yfkrk~wl 429 (430)
++|++||+ ||++|++|+|+|+|||+|||||+++|+. +|++|||++++++++ +++++++||||||||
T Consensus 274 ~~N~~mk~---LTiit~IflP~T~IaGiyGMNf~~mPel---~~~~gy~~~l~~m~~----~~~~~~~~fkrk~WL 339 (339)
T 4ev6_A 274 KMNQIMKI---LTMVTTIFAVPMWITGIYGMNFSYLPLA---NNPQGFWLVMALMVV----IIMIFVYIFRRSGWI 339 (339)
T ss_dssp HHHHHHHH---HHHHHHHSSHHHHHHHHTTCCCSCCTTS---SCTTHHHHHHHHHHH----HHHHHHHHHHTTTCC
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHhhccCcCCCCCCc---cCchHHHHHHHHHHH----HHHHHHHHHHHcCCC
Confidence 99999999 9999999999999999999999998874 699999988766554 445788999999997
No 3
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=99.95 E-value=2.7e-27 Score=240.02 Aligned_cols=230 Identities=17% Similarity=0.223 Sum_probs=161.6
Q ss_pred eeccccchheecCeeeeecCCCCCchhHHHHHHHHHhcccccccccccCCCCCccccccCCCCCCCCCCCCCCCCCCCCC
Q 014152 33 INLEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKSQINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQF 112 (430)
Q Consensus 33 Vnle~iraII~~d~Vllf~~~~~~~~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 112 (430)
+..++|..+++.+.|+.|...+. +.++.+++|+....... .
T Consensus 134 ~~~~~v~~~l~~~~liTv~~~~~---~~~~~v~~rl~~~~~~~----~-------------------------------- 174 (363)
T 2iub_A 134 LESEQVSLILTKNCVLMFQEKIG---DVFDPVRERIRYNRGII----R-------------------------------- 174 (363)
T ss_dssp EEEEEEEEEEETTEEEEEESSSC---CSCHHHHHHHHTTCTTT----T--------------------------------
T ss_pred cceEEEEEEEECCEEEEEEeCCC---chHHHHHHHHHhcCCcc----c--------------------------------
Confidence 45567899999999999987653 45677788886320000 0
Q ss_pred ccchhhhhhcccccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHH
Q 014152 113 EDENEERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLV 192 (430)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~ 192 (430)
..+ |. -+|-++++.++..+..-+..++..+..+.+.+.++.+...++++..+|+.+.
T Consensus 175 -----------------~~~----~~--~ll~~lld~ivd~y~~~l~~l~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~ 231 (363)
T 2iub_A 175 -----------------KKR----AD--YLLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLV 231 (363)
T ss_dssp -----------------TSC----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHH
T ss_pred -----------------cCC----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 001 21 2333444444444444444899999999988887777788999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCchhHhhhhhhHHHhhhhhcccCCCCCCCCccchHHhhhhccccchhhhhhhhcCCCCCccc
Q 014152 193 AITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTSSINERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEA 272 (430)
Q Consensus 193 ~l~~rv~~vr~~l~~lLddD~Dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (430)
.+.+-+.+.+++++.+...+.. .++
T Consensus 232 ~lrr~l~p~~~vl~~L~~~~~~----~~~--------------------------------------------------- 256 (363)
T 2iub_A 232 ELRKTIWPLREVLSSLYRDVPP----LIE--------------------------------------------------- 256 (363)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSS----SCH---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccc----cCC---------------------------------------------------
Confidence 9999999999999999875432 111
Q ss_pred cccccccccccccccccccccCCCCccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 014152 273 DFQNTENIHDNLFTQNIHSRASHGTRTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLD 352 (430)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~E~LLE~Y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld 352 (430)
++....++.-..++..+.+.++.+++.+..+.|.+...++
T Consensus 257 ----------------------------------------~~~~~~lrDv~d~~~~~~e~~~~~re~l~~l~d~~~s~is 296 (363)
T 2iub_A 257 ----------------------------------------KETVPYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVS 296 (363)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112233344557888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Q 014152 353 DKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRLL 429 (430)
Q Consensus 353 ~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMNl~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~~~~yfkrk~wl 429 (430)
+++|++||+ ||++|++|+|+|+|||+|||||+++|+ .+|++|||++++++++ +++++++||||||||
T Consensus 297 ~~~N~imk~---LTiit~IflP~T~IaGiyGMNf~~mPe---l~~~~Gy~~~l~~m~~----i~~~~~~~Fkrk~Wl 363 (363)
T 2iub_A 297 NKTNEVMKV---LTIIATIFMPLTFIAGIYGMNFEYMPE---LRWKWGYPVVLAVMGV----IAVIMVVYFKKKKWL 363 (363)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHTTSCC-----------------CHHHHHHHHH----HHHHHHTTTTSCC--
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHhhhcccCCCCCc---ccCcHHHHHHHHHHHH----HHHHHHHHHHHcccC
Confidence 999999999 999999999999999999999999886 3699999987765544 445789999999997
No 4
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=98.96 E-value=2.7e-08 Score=96.71 Aligned_cols=171 Identities=18% Similarity=0.141 Sum_probs=121.8
Q ss_pred eccccchheecCeeeeecCCCCCchhHHHHHHHHHhcccccccccccCCCCCccccccCCCCCCCCCCCCCCCCCCCCCc
Q 014152 34 NLEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKSQINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFE 113 (430)
Q Consensus 34 nle~iraII~~d~Vllf~~~~~~~~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 113 (430)
..++|..+++.+.|+.|...+. +.++.+++|+........
T Consensus 110 ~t~~v~i~l~~~~lITv~~~~~---~~~~~v~~~l~~~~~~~~------------------------------------- 149 (280)
T 4egw_A 110 TTTSLGIYIKNNLLLTIHSDKI---KAIGRLHKLISTKKPRIV------------------------------------- 149 (280)
T ss_dssp EEEEEEEEEETTEEEEEESSCC---HHHHHHHHHHHHSCCSSS-------------------------------------
T ss_pred eeeeEEEEEECCEEEEEecCCc---chHHHHHHHHHhcCcccc-------------------------------------
Confidence 4567999999999999987654 677889899864211000
Q ss_pred cchhhhhhcccccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHH
Q 014152 114 DENEERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVA 193 (430)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~ 193 (430)
...+++.+-| .+|+.+.+.+...++ .++..+..+.+.+.++.+...++++..+|+.|..
T Consensus 150 ---------------~~~g~~~ll~--~lld~ivd~y~~~l~----~i~~~id~lE~~l~~~~~~~~l~~i~~lrr~l~~ 208 (280)
T 4egw_A 150 ---------------FERGIGFLLY--HILNEITRSYSRILM----NLEDELEELEDKLLAGYDREVMEKILGLRKTLVY 208 (280)
T ss_dssp ---------------CTTTTTHHHH--HHHHHHHHHHHHHHH----HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHH
T ss_pred ---------------cccCHHHHHH--HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 0123333444 677777777777777 8899999999999888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCchhHhhhhhhHHHhhhhhcccCCCCCCCCccchHHhhhhccccchhhhhhhhcCCCCCcccc
Q 014152 194 ITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTSSINERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEAD 273 (430)
Q Consensus 194 l~~rv~~vr~~l~~lLddD~Dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (430)
+++-+.+.++++..+...+.. .++
T Consensus 209 lrr~l~p~~~vl~~L~~~~~~----~~~---------------------------------------------------- 232 (280)
T 4egw_A 209 FHKSLIANRDVLVLLKRKYLP----ITT---------------------------------------------------- 232 (280)
T ss_dssp HHHHHHHHHHHHHHHHHSCCS----SCC----------------------------------------------------
T ss_pred HHHHHhhHHHHHHHHHhcCcc----cCC----------------------------------------------------
Confidence 999999999999998765422 111
Q ss_pred ccccccccccccccccccccCCCCccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhH
Q 014152 274 FQNTENIHDNLFTQNIHSRASHGTRTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDD 353 (430)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~E~LLE~Y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld~ 353 (430)
++....|+.-+.++.++.+.++.+++.+..+.|.+...+++
T Consensus 233 ---------------------------------------~~~~~~l~Dv~dh~~~~~e~~~~~re~l~~l~d~~~s~is~ 273 (280)
T 4egw_A 233 ---------------------------------------KEDRENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLENI 273 (280)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred ---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112233334466778889999999999999999999999
Q ss_pred HHHHHHH
Q 014152 354 KQNHLLQ 360 (430)
Q Consensus 354 ~rN~lmk 360 (430)
++|++||
T Consensus 274 ~~N~iMK 280 (280)
T 4egw_A 274 KMNQIMK 280 (280)
T ss_dssp -------
T ss_pred HHHHhhC
Confidence 9999997
No 5
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=98.26 E-value=1.2e-05 Score=77.01 Aligned_cols=115 Identities=10% Similarity=0.030 Sum_probs=82.4
Q ss_pred eeccccchheecCeeeeecCCCCCchhHHHHHHHHHhcccccccccccCCCCCccccccCCCCCCCCCCCCCCCCCCCCC
Q 014152 33 INLEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKSQINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQF 112 (430)
Q Consensus 33 Vnle~iraII~~d~Vllf~~~~~~~~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 112 (430)
+..++|..+++.+.|+.|..... ++++.+++|+.....
T Consensus 104 ~~~~~v~~~l~~~~lITv~~~~~---~~~~~v~~rl~~~~~--------------------------------------- 141 (264)
T 3nvo_A 104 DQLVAMRLYMDERFIVSTRQRKV---LALDDVVSDLQEGTG--------------------------------------- 141 (264)
T ss_dssp --CCEEEEEECSSEEEEEESSCC---HHHHHHHHHHHTTCS---------------------------------------
T ss_pred cceEEEEEEEeCCEEEEEecCCc---CcHHHHHHHHHhCCC---------------------------------------
Confidence 34678999999999999997643 788899999863210
Q ss_pred ccchhhhhhcccccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHH
Q 014152 113 EDENEERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLV 192 (430)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~ 192 (430)
..+ |. .+|-++++.++..+..-+..++..+..+.+.+.++ +...+.+|..+|+.+.
T Consensus 142 -----------------~~~----~~--~ll~~lld~ivd~y~~~l~~l~~~id~lE~~l~~~-~~~~l~~l~~lrr~l~ 197 (264)
T 3nvo_A 142 -----------------PVD----CG--GWLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQ-QIPPRGFLALLRKQLI 197 (264)
T ss_dssp -----------------CSS----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----CCCCTTHHHHHHHHHH
T ss_pred -----------------CCC----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHH
Confidence 001 22 34444455555554444558899988888888766 6778999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCch
Q 014152 193 AITGRVQKVRDELEHLLDDDE 213 (430)
Q Consensus 193 ~l~~rv~~vr~~l~~lLddD~ 213 (430)
.|++-+.+.++++.++...+.
T Consensus 198 ~lrr~l~p~~~vl~~L~~~~~ 218 (264)
T 3nvo_A 198 VMRRYMAPQRDVYARLASERL 218 (264)
T ss_dssp HHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHhHHHHHHHHHhCCC
Confidence 999999999999999987653
No 6
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=98.23 E-value=1.6e-05 Score=75.62 Aligned_cols=156 Identities=12% Similarity=0.049 Sum_probs=103.4
Q ss_pred ccchheecCeeeeecCCCCCchhHHHHHHHHHhcccccccccccCCCCCccccccCCCCCCCCCCCCCCCCCCCCCccch
Q 014152 37 HIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKSQINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFEDEN 116 (430)
Q Consensus 37 ~iraII~~d~Vllf~~~~~~~~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 116 (430)
.+..+++.+.|+.+...+. +.++.+++|+.....
T Consensus 97 ~l~i~l~~~~lITvr~~~~---~~~~~v~~~l~~~~~------------------------------------------- 130 (252)
T 3ck6_A 97 SIRILYFQGALISTRKIPS---RAIMEIRQALAEHKG------------------------------------------- 130 (252)
T ss_dssp EEEEEEETTEEEEEESSCC---HHHHHHHHHHHTTCS-------------------------------------------
T ss_pred EEEEEEeCCEEEEEeCCCc---chHHHHHHHHHhCCC-------------------------------------------
Confidence 4677999999999987654 678888888853100
Q ss_pred hhhhhcccccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHH
Q 014152 117 EERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITG 196 (430)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~ 196 (430)
..++..+- +.+|+.+.+.+...++ .++..+..+.+. ...++++..+|+.+..+++
T Consensus 131 -------------~~~~~~ll--~~lld~ivd~y~~~l~----~l~~~id~lE~~------~~~~~~l~~lrr~l~~lrr 185 (252)
T 3ck6_A 131 -------------PKSLASLL--NQIIEGLNGKIDLYLD----TIEETLNEFDVN------DESTYNHIAAQKALISIKR 185 (252)
T ss_dssp -------------CSSHHHHH--HHHHHHHHHHHHHHHH----HHHHHHHTCCTT------CGGGCCHHHHHHHHHHHHH
T ss_pred -------------CCCHHHHH--HHHHHHHHHHHHHHHH----HHHHHHHHHHcC------chHHHHHHHHHHHHHHHHH
Confidence 00111111 2445555555444444 667666655544 2357889999999999999
Q ss_pred HHHHHHHHHHHHhcCchhHhhhhhhHHHhhhhhcccCCCCCCCCccchHHhhhhccccchhhhhhhhcCCCCCccccccc
Q 014152 197 RVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTSSINERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEADFQN 276 (430)
Q Consensus 197 rv~~vr~~l~~lLddD~Dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (430)
-+.+.|+++..++..+.. +...
T Consensus 186 ~l~p~r~~l~~L~r~~~~-----~~~~----------------------------------------------------- 207 (252)
T 3ck6_A 186 FIRPQQYAIRDLIESESE-----LVTS----------------------------------------------------- 207 (252)
T ss_dssp HHHHHHHHHHHHHHTTCH-----HHHT-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCC-----CCHH-----------------------------------------------------
Confidence 999999999999875422 1100
Q ss_pred cccccccccccccccccCCCCccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHH
Q 014152 277 TENIHDNLFTQNIHSRASHGTRTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQN 356 (430)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~E~LLE~Y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld~~rN 356 (430)
....+..-+.++..+.+.++.+++.+..+.+.+...+++++|
T Consensus 208 --------------------------------------~~~~~rdv~d~~~~~~e~i~~~re~~~~l~d~~~s~~s~~~N 249 (252)
T 3ck6_A 208 --------------------------------------RPHQYRFAHNNITRINETIEFYLGEVALFQDEIKHNRDEKTN 249 (252)
T ss_dssp --------------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 001122334467788899999999999999999999999999
Q ss_pred HHH
Q 014152 357 HLL 359 (430)
Q Consensus 357 ~lm 359 (430)
++|
T Consensus 250 ~~m 252 (252)
T 3ck6_A 250 KNS 252 (252)
T ss_dssp ---
T ss_pred cCC
Confidence 987
No 7
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=97.08 E-value=0.0011 Score=63.17 Aligned_cols=118 Identities=18% Similarity=0.283 Sum_probs=80.0
Q ss_pred eccccchheecCeeeeecCCCCCchhHHHHHHHHHhcccccccccccCCCCCccccccCCCCCCCCCCCCCCCCCCCCCc
Q 014152 34 NLEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKSQINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFE 113 (430)
Q Consensus 34 nle~iraII~~d~Vllf~~~~~~~~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 113 (430)
..++|..+++.+.|+.|...+. +.++.+++|+....... .
T Consensus 126 ~~~~v~~~l~~~~lITv~~~~~---~~~~~v~~rl~~~~~~~----~--------------------------------- 165 (269)
T 2bbh_A 126 ESEQVSLILTKNCVLMFQEKIG---DVFDPVRERIRYNRGII----R--------------------------------- 165 (269)
T ss_dssp EEEEEEEEEETTEEEEEESSSC---CSCHHHHHHHHTTCTTG----G---------------------------------
T ss_pred eEEEEEEEEECCEEEEEECCCC---CcHHHHHHHHHhcCCch----h---------------------------------
Confidence 4567889999999999986553 34567788886320000 0
Q ss_pred cchhhhhhcccccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHH
Q 014152 114 DENEERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVA 193 (430)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~ 193 (430)
..+++.+-| .+|+.+.+.+...++ .++..+..+.+.+.++.+...+++|..+|+.+..
T Consensus 166 ----------------~~~~~~ll~--~lld~ivd~y~~~l~----~i~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~ 223 (269)
T 2bbh_A 166 ----------------KKRADYLLY--SLIDALVDDYFVLLE----KIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVE 223 (269)
T ss_dssp ----------------GSCHHHHHH--HHHHHHHHHHHHHHH----HHHHHHHHHHHCC-------CHHHHHHHHHHHHH
T ss_pred ----------------hCCHHHHHH--HHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 011111222 566666666666665 8888888888887766667789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCch
Q 014152 194 ITGRVQKVRDELEHLLDDDE 213 (430)
Q Consensus 194 l~~rv~~vr~~l~~lLddD~ 213 (430)
|++-+.+.++++..++..+.
T Consensus 224 lrr~l~p~~~vl~~L~~~~~ 243 (269)
T 2bbh_A 224 LRKTIWPLREVLSSLYRDVP 243 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999997643
No 8
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=96.79 E-value=0.0018 Score=61.88 Aligned_cols=116 Identities=16% Similarity=0.266 Sum_probs=83.3
Q ss_pred eccccchheecCeeeeecCCCCCchhHHHHHHHHHhcccccccccccCCCCCccccccCCCCCCCCCCCCCCCCCCCCCc
Q 014152 34 NLEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKSQINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFE 113 (430)
Q Consensus 34 nle~iraII~~d~Vllf~~~~~~~~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 113 (430)
..++|..+++.+.|+.|...+. +.++.+++|+... ... .
T Consensus 128 ~~~~v~~~l~~~~lITv~~~~~---~~~~~v~~rl~~~-~~~----~--------------------------------- 166 (266)
T 2hn1_A 128 EIDQLSLVLKKNLVATFEEREY---WILDSIRSRLKSG-GRM----R--------------------------------- 166 (266)
T ss_dssp EEEEEEEEEETTEEEEEESSSS---CSTHHHHHHHHSS-SHH----H---------------------------------
T ss_pred ceEEEEEEEECCEEEEEEcCCC---ChHHHHHHHHHhC-Cch----h---------------------------------
Confidence 4567899999999999986553 3457788888632 000 0
Q ss_pred cchhhhhhcccccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHH
Q 014152 114 DENEERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVA 193 (430)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~ 193 (430)
..+++.+-| .+|+.+.+.+...++ .++..+..+.+.+..+.+ ..++++..+|+.+..
T Consensus 167 ----------------~~~~~~ll~--~lld~ivd~y~~~l~----~i~~~id~lE~~l~~~~~-~~l~~l~~lrr~l~~ 223 (266)
T 2hn1_A 167 ----------------KLAGDYLAY--TILDAVVDSYFEALL----KISDEIEVLEDEVVSGDS-TLIGKIHSLKREILA 223 (266)
T ss_dssp ----------------HSCHHHHHH--HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHHHH
T ss_pred ----------------hcCHHHHHH--HHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHH
Confidence 011111222 455555555555555 888888888888876666 788999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCch
Q 014152 194 ITGRVQKVRDELEHLLDDDE 213 (430)
Q Consensus 194 l~~rv~~vr~~l~~lLddD~ 213 (430)
|++-+.+.++++..++..+.
T Consensus 224 lrr~l~p~~~vl~~L~~~~~ 243 (266)
T 2hn1_A 224 FRNAVWPLRDVLSFFTRVEH 243 (266)
T ss_dssp HHHHHTTHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999998653
No 9
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=74.92 E-value=12 Score=29.07 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 147 LEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRD 203 (430)
Q Consensus 147 L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~ 203 (430)
+++-+..|+.-+..|+.....+|.+.++. =..||+|++.|+.++..+++
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ss--------Q~KLKqRit~LE~~~~~~~~ 53 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESM--------QQKLKQRLTKVEKFLKPLID 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcccCC
Confidence 45667778888888888888888777653 34789999999999887554
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=66.86 E-value=6.5 Score=27.48 Aligned_cols=15 Identities=0% Similarity=0.087 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHcC
Q 014152 413 IFLYVVAIAWCKHKR 427 (430)
Q Consensus 413 v~i~~~~~~yfkrk~ 427 (430)
+++.++.++|+|||+
T Consensus 25 ~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 25 LVVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhhH
Confidence 344455566666664
No 11
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=66.72 E-value=8.3 Score=26.95 Aligned_cols=14 Identities=7% Similarity=0.192 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHcC
Q 014152 414 FLYVVAIAWCKHKR 427 (430)
Q Consensus 414 ~i~~~~~~yfkrk~ 427 (430)
++.++.++|+|||+
T Consensus 25 ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 25 IVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhh
Confidence 44445556666664
No 12
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=64.71 E-value=10 Score=26.54 Aligned_cols=20 Identities=20% Similarity=-0.006 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHcCc
Q 014152 409 ATGSIFLYVVAIAWCKHKRL 428 (430)
Q Consensus 409 ~~~~v~i~~~~~~yfkrk~w 428 (430)
+++.+++.++..+|+|||+.
T Consensus 21 vll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhheehhhh
Confidence 34445555667788888764
No 13
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=60.14 E-value=1.3e+02 Score=29.32 Aligned_cols=97 Identities=19% Similarity=0.253 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccc
Q 014152 318 LLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDD----KQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDE 393 (430)
Q Consensus 318 LLE~Y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld~----~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMNl~~~~~~~ 393 (430)
-...|++++ .+++..+.+.++...|.++..++. .-|+.-++ +-++|++.+++...+=+-|. -.|=|+
T Consensus 258 ~~~~~lrDv---~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~i---mk~LTiit~IflP~T~IaGi--yGMNf~- 328 (363)
T 2iub_A 258 ETVPYFRDV---YDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEV---MKVLTIIATIFMPLTFIAGI--YGMNFE- 328 (363)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTS--CC-----
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh--hcccCC-
Confidence 334555554 667777777777777777766654 44555444 99999999999999999886 222242
Q ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 014152 394 HKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKR 427 (430)
Q Consensus 394 ~~~~~~~F~~v~~~~~~~~v~i~~~~~~yfkrk~ 427 (430)
+++...|-+|. .+++++++++.+..+.+-|
T Consensus 329 ---~mPel~~~~Gy-~~~l~~m~~i~~~~~~~Fk 358 (363)
T 2iub_A 329 ---YMPELRWKWGY-PVVLAVMGVIAVIMVVYFK 358 (363)
T ss_dssp -------------C-HHHHHHHHHHHHHHHTTTT
T ss_pred ---CCCcccCcHHH-HHHHHHHHHHHHHHHHHHH
Confidence 56666666653 3344556666666555443
No 14
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=59.49 E-value=18 Score=21.95 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 184 VRQIKSRLVAITGRVQKVRDELEHL 208 (430)
Q Consensus 184 lr~lK~~L~~l~~rv~~vr~~l~~l 208 (430)
+.++|..+-++++.|+.+++++.++
T Consensus 2 vyqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 2 VYQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhHHHHHHHHHhcc
Confidence 4578888889999999888887764
No 15
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=56.42 E-value=34 Score=24.08 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHH
Q 014152 147 LEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRV 198 (430)
Q Consensus 147 L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv 198 (430)
+++-+..|+.-+..|+.....+|.+.++. =..+|+|++.++.+|
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ss--------q~KlKqRit~lE~~v 46 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNAT--------QMKMKQRLSQLESQV 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcC
Confidence 45667777777778888888887776543 246788888887654
No 16
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=56.13 E-value=8.7 Score=25.92 Aligned_cols=9 Identities=0% Similarity=0.135 Sum_probs=3.7
Q ss_pred HHHHHHHHc
Q 014152 418 VAIAWCKHK 426 (430)
Q Consensus 418 ~~~~yfkrk 426 (430)
++.+||.||
T Consensus 29 ~l~~~~~rr 37 (38)
T 2k1k_A 29 GILVFRSRR 37 (38)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHeec
Confidence 333444443
No 17
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=51.59 E-value=1.7e+02 Score=28.10 Aligned_cols=96 Identities=15% Similarity=0.083 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccCCCccccccccCCchHHHH
Q 014152 326 IDGTLNKLSTLREYVDDTEDYINIMLDDKQNHL-LQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWT 404 (430)
Q Consensus 326 id~i~~~l~~l~e~i~~ted~i~~~Ld~~rN~l-mk~~l~LTi~t~i~~~~tlIaGiFGMNl~~~~~~~~~~~~~~F~~v 404 (430)
+.++.+++.++.+.++...+.++..++...+.+ .+.+-.+-++|++.+++...+=+-|. =.|=|+ +.+...|-
T Consensus 239 l~dv~~~~~~l~e~~~~~~e~l~~l~d~~~s~is~~~N~~mk~LTiit~IflP~T~IaGi--yGMNf~----~mPel~~~ 312 (339)
T 4ev6_A 239 FEDLYYDTLQLIDMSATYREVLTSMMDITLSLENIKMNQIMKILTMVTTIFAVPMWITGI--YGMNFS----YLPLANNP 312 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHH--TTCCCS----CCTTSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCcCC----CCCCccCc
Confidence 445567777777777777777776666544332 13333488888887777777777774 222242 44554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCc
Q 014152 405 VGGGATGSIFLYVVAIAWCKHKRL 428 (430)
Q Consensus 405 ~~~~~~~~v~i~~~~~~yfkrk~w 428 (430)
+| .++++++++++.++.+.+-|+
T Consensus 313 ~g-y~~~l~~m~~~~~~~~~~fkr 335 (339)
T 4ev6_A 313 QG-FWLVMALMVVIIMIFVYIFRR 335 (339)
T ss_dssp TH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHH
Confidence 44 333455677667666665443
No 18
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=48.25 E-value=1.8e+02 Score=27.48 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=15.0
Q ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 014152 311 DVEELEMLLEAYFVQI-DGTLNKLSTLREYV 340 (430)
Q Consensus 311 ~~ee~E~LLE~Y~~~i-d~i~~~l~~l~e~i 340 (430)
+.+++-..|..|..++ +.+.+.++.|++.+
T Consensus 111 ~veelk~~L~Py~eelr~k~~~~leeLr~~l 141 (273)
T 3s84_A 111 NVEELKGRLTPYADEFKVKIDQTVEELRRSL 141 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHhHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666665544 22334444444443
No 19
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=45.06 E-value=48 Score=31.95 Aligned_cols=58 Identities=14% Similarity=0.206 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 141 VALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELE 206 (430)
Q Consensus 141 ~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~ 206 (430)
..||++-..+...+=+++..|...|..+..+|.+.+ ..+-.|+..|..||..+...+.
T Consensus 24 ~eLe~V~n~tL~gilRQL~dLs~~A~dIF~eL~~e~--------~~~~~R~~~L~~RI~~L~~~v~ 81 (279)
T 3p8c_D 24 NELECVTNISLANIIRQLSSLSKYAEDIFGELFNEA--------HSFSFRVNSLQERVDRLSVSVT 81 (279)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhcc
Confidence 458888888888888899999999999999997754 3334444445555555544443
No 20
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=41.62 E-value=3.5e+02 Score=28.82 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 014152 182 ERVRQIKSRLVAITGRVQKVRDELEHLLDD 211 (430)
Q Consensus 182 erlr~lK~~L~~l~~rv~~vr~~l~~lLdd 211 (430)
+++..++..+..+....+.+++.|.++.++
T Consensus 366 ~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~ 395 (695)
T 2j69_A 366 KRIDSVEPEFNKLTGIRDEFQKEIINTRDT 395 (695)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666667777777777777777766654
No 21
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=34.65 E-value=38 Score=24.58 Aligned_cols=7 Identities=29% Similarity=0.601 Sum_probs=4.2
Q ss_pred HHHHHcC
Q 014152 421 AWCKHKR 427 (430)
Q Consensus 421 ~yfkrk~ 427 (430)
.|||||+
T Consensus 37 GFFkR~~ 43 (54)
T 2knc_A 37 GFFKRNR 43 (54)
T ss_dssp HHTTTTC
T ss_pred CcccCCC
Confidence 4566664
No 22
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=32.47 E-value=46 Score=20.85 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 185 RQIKSRLVAITGRVQKVRDELEHL 208 (430)
Q Consensus 185 r~lK~~L~~l~~rv~~vr~~l~~l 208 (430)
..+|+.|+.++.+|..+-+-|+++
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~~ 25 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEKI 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457888888888888887777765
No 23
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=32.43 E-value=36 Score=29.11 Aligned_cols=31 Identities=16% Similarity=0.197 Sum_probs=23.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 014152 397 GMQEFLWTVGGGATGSIFLYVVAIAWCKHKR 427 (430)
Q Consensus 397 ~~~~F~~v~~~~~~~~v~i~~~~~~yfkrk~ 427 (430)
+.+++.++..++.+.+++++.+|+.|.|-||
T Consensus 49 ~~~~ylYIL~vmgffgff~~GImLsYiRSKk 79 (138)
T 2k21_A 49 GKLEALYVLMVLGFFGFFTLGIMLSYIRSKK 79 (138)
T ss_dssp CSSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeehHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 4455666666677777778888999999776
No 24
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=31.33 E-value=84 Score=25.32 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 014152 179 LNLERVRQIKSRLVAITGRVQKVR 202 (430)
Q Consensus 179 ~~Lerlr~lK~~L~~l~~rv~~vr 202 (430)
.-..+||..|+.|..+++.++.++
T Consensus 71 ~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 71 MYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678888888888777766544
No 25
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=31.02 E-value=4.7e+02 Score=27.33 Aligned_cols=31 Identities=13% Similarity=0.006 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 014152 322 YFVQIDGTLNKLSTLREYVDDTEDYINIMLD 352 (430)
Q Consensus 322 Y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld 352 (430)
-++++..+-+.|+.++..|.-+|--|.+++.
T Consensus 129 QlsnIrvLQsnLedq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 129 KVQHIQLLQKNVRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555556666666666666654
No 26
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=30.34 E-value=78 Score=21.71 Aligned_cols=7 Identities=29% Similarity=0.933 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 014152 401 FLWTVGG 407 (430)
Q Consensus 401 F~~v~~~ 407 (430)
.|++++.
T Consensus 10 ~wiIi~s 16 (42)
T 2k1a_A 10 IWWVLVG 16 (42)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 4444443
No 27
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=29.95 E-value=45 Score=24.24 Aligned_cols=7 Identities=14% Similarity=0.206 Sum_probs=4.2
Q ss_pred HHHHHcC
Q 014152 421 AWCKHKR 427 (430)
Q Consensus 421 ~yfkrk~ 427 (430)
.|||||+
T Consensus 34 GFFKR~~ 40 (54)
T 2l8s_A 34 GFFKRPL 40 (54)
T ss_dssp HHTTSCC
T ss_pred CcccCCC
Confidence 4566664
No 28
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=28.44 E-value=2.7e+02 Score=23.45 Aligned_cols=64 Identities=17% Similarity=0.159 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 139 EFVALEACLEAACSCLENEAKTLEQEAHPALDKLTS-KISTLNLERVRQIKSRLVAITGRVQKVRDEL 205 (430)
Q Consensus 139 El~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~-~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l 205 (430)
|+.-+-.=|...|..++.++.+|+..+.-+...=.+ +++...+ .+=|+-+..+..+|..+++.|
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei---~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDL---QERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 556677777888888888888888888866532211 3444444 344555677777777777765
No 29
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=27.48 E-value=25 Score=23.31 Aligned_cols=17 Identities=29% Similarity=0.208 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHcC
Q 014152 411 GSIFLYVVAIAWCKHKR 427 (430)
Q Consensus 411 ~~v~i~~~~~~yfkrk~ 427 (430)
+.+++.++...|.|||+
T Consensus 19 l~vii~l~~~~~iRRr~ 35 (35)
T 1iij_A 19 LFLILVVVVGILIKRRR 35 (35)
T ss_dssp HHHHHTTTTTHHHHHCC
T ss_pred HHHHHHHHhheEEeecC
Confidence 33344445667788875
No 30
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=27.21 E-value=99 Score=27.74 Aligned_cols=71 Identities=18% Similarity=0.373 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 014152 141 VALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVR-QIKSRLVAITGRVQKVRDELEHLLDDD 212 (430)
Q Consensus 141 ~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr-~lK~~L~~l~~rv~~vr~~l~~lLddD 212 (430)
+=+...+......|...+..+...+.|..+++..++. ..++.+| +++..|..++.++.+..+.|..-+...
T Consensus 58 ~el~~l~~e~~~~l~~~~~~l~~qL~P~~~e~~~~l~-~~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l~~~ 129 (191)
T 1nfn_A 58 QELRALMDETMKELKAYKSELEEQLTPVAEETRARLS-KELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQS 129 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC----------CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4445555666666665566666666666666655542 2445555 478888899999999999888877654
No 31
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=26.25 E-value=53 Score=25.49 Aligned_cols=24 Identities=13% Similarity=0.054 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 401 FLWTVGGGATGSIFLYVVAIAWCK 424 (430)
Q Consensus 401 F~~v~~~~~~~~v~i~~~~~~yfk 424 (430)
.+.++++++++.+++.+++++.+|
T Consensus 10 ~~~Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444455444444444444444
No 32
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=25.70 E-value=3.5e+02 Score=26.83 Aligned_cols=66 Identities=18% Similarity=0.370 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 141 VALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLER----VRQIKSRLVAITGRVQKVRDELEH 207 (430)
Q Consensus 141 ~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Ler----lr~lK~~L~~l~~rv~~vr~~l~~ 207 (430)
.|+| |+.++...++.+.+.-|.-....++.....-....+++ ...||++|..+...-+++.+.|+.
T Consensus 161 ~a~~-af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~ 230 (373)
T 3hhm_B 161 TAIE-AFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKK 230 (373)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666 66777778887877777666566666655444444444 446788888877777776666654
No 33
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=24.98 E-value=2.7e+02 Score=22.41 Aligned_cols=60 Identities=13% Similarity=0.251 Sum_probs=39.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 014152 134 KVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVR 202 (430)
Q Consensus 134 ~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr 202 (430)
-.|-.=|.=|....+.+-..|+.|++.|+.++..+.. +.+ +...+|++-+-|......+.
T Consensus 32 qELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~-iqs--------~aK~LRnKA~~L~~eLe~F~ 91 (96)
T 1t3j_A 32 QEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEK-MQN--------NSKLLRNKAVQLESELENFS 91 (96)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--------HhHHHHHHHHHHHHHHHHHH
Confidence 4566777999999999999999999999999886432 222 34445555555544444443
No 34
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=24.87 E-value=2.1e+02 Score=21.26 Aligned_cols=35 Identities=14% Similarity=-0.043 Sum_probs=21.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 137 PFEFVALEACLEAACSCLENEAKTLEQEAHPALDK 171 (430)
Q Consensus 137 PFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~ 171 (430)
+=|+.-|-..+......|....+.....+..+-.+
T Consensus 36 ~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~she 70 (114)
T 3zcc_A 36 ADEIGILAKSIERLRRSLKQLADDGTLLMAGVSHD 70 (114)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45778888888777777776555544444433333
No 35
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=24.76 E-value=1.3e+02 Score=19.76 Aligned_cols=28 Identities=7% Similarity=-0.172 Sum_probs=15.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 397 GMQEFLWTVGGGATGSIFLYVVAIAWCK 424 (430)
Q Consensus 397 ~~~~F~~v~~~~~~~~v~i~~~~~~yfk 424 (430)
++.+-+.++.+..+..++.++.++..|-
T Consensus 4 ~l~GTl~~V~ilg~~I~i~W~~vf~lFl 31 (34)
T 3s8f_C 4 KPKGALAVILVLTLTILVFWLGVYAVFF 31 (34)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceehHHHHHHHHHHHHHHHHHeeee
Confidence 5667776665555555555555554443
No 36
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=24.13 E-value=2.2e+02 Score=22.44 Aligned_cols=65 Identities=25% Similarity=0.279 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChh-hHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcC
Q 014152 147 LEAACSCLENEAKTLEQEAHPALDKLTSKISTL-NLERVRQIKSRL----VAITGRVQKVRDELEHLLDD 211 (430)
Q Consensus 147 L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~-~Lerlr~lK~~L----~~l~~rv~~vr~~l~~lLdd 211 (430)
|+.+...|+..++.+...+..++++|..+.+.. -|-.+...=+.- +.-..-++.+++...-+|+-
T Consensus 12 Ld~v~~~f~~ga~~~~~~v~~Ai~~L~~~PsnPa~LAeyQ~kl~eysl~rNaqSttiKa~KDi~~sI~~~ 81 (85)
T 2ca5_A 12 LSSLSETFDDGTQTLQGELTLALDKLAKNPSNPQLLAEYQSKLSEYTLYRNAQSNTVKVIKDVDAAILEH 81 (85)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788889999999999999999999999876543 333222211222 12334556677777777764
No 37
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=24.11 E-value=3.7e+02 Score=23.61 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 014152 157 EAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDD 211 (430)
Q Consensus 157 e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLdd 211 (430)
++..+|..+..+|..+.+..+...|.. .+.+.+.+-+++|..+.++++.+=.+
T Consensus 23 Diy~aE~q~~~aL~~~~~~a~~p~Lk~--~l~~H~~eT~~qi~rLe~i~~~lg~~ 75 (173)
T 2gyq_A 23 DIYYAEQQITKALPKMIEQATNRDLSQ--GLTSHLEETQKQIERLDQVFKKLGQK 75 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 455789999999999999888877753 36777888889999999999886443
No 38
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.45 E-value=2.3e+02 Score=28.34 Aligned_cols=51 Identities=6% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 144 EACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELE 206 (430)
Q Consensus 144 E~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~ 206 (430)
|.++.++...|+.+...|...+. .++.+|+.||..|..+..++|++-..|+
T Consensus 108 dn~~~e~s~eLe~~i~~lk~~V~------------~q~~~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 108 DNTFKQINEDLRSRIEILRRKVI------------EQVQRINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH------------HHhHHHHHHHHHHHHHHHHHHHHHHHHH
No 39
>1skv_A ORF D-63, hypothetical 7.5 kDa protein; sulfolobus spindle virus, SSV, archaeal, crenarchaeal, helix-turn-helix, four helix bundle; 2.60A {Sulfolobus virus 1} SCOP: a.30.5.1
Probab=23.24 E-value=2.4e+02 Score=21.21 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhccCChhhHHHHHHHHHHHH
Q 014152 144 EACLEAACSCLENEAKTLEQEAHPA-LDKLTSKISTLNLERVRQIKSRLV 192 (430)
Q Consensus 144 E~~L~~~~~~Le~e~~~Le~~~~~~-Ld~L~~~vs~~~Lerlr~lK~~L~ 192 (430)
|.-+.+.+..|+.++++|=..+..+ .|.++.+.+...++|-.-+.+++.
T Consensus 4 ev~~~elF~eLD~diReLLSlvheIKID~It~n~~kekvekAlfLsq~Iq 53 (69)
T 1skv_A 4 EVLEKELFEMLDEDVRELLSLIHEIKIDRITGNMDKQKLGKAYFQVQKIE 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHheeeeccCCCHHHHHHHHHHHHHHH
Confidence 5677889999999999999998887 567788888888887666555543
No 40
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=23.20 E-value=3.4e+02 Score=22.91 Aligned_cols=64 Identities=13% Similarity=0.158 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014152 147 LEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLD 210 (430)
Q Consensus 147 L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLd 210 (430)
++.-+-.+-.+....+.-+..+.++|.+-+....++.|+.|.++-..+..........++.|..
T Consensus 10 id~L~leFAKrAa~fNnW~e~A~EdL~D~~~v~sleEI~~L~~~He~F~~~L~~a~~e~~~i~~ 73 (129)
T 1wlx_A 10 IDQLHLEYAKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLPDADREREAILA 73 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHhHHHHhccchhhccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3555666777888899999999999999988899999999988888888888777777776654
No 41
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=22.24 E-value=3.4e+02 Score=26.76 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 148 EAACSCLENEAKTLEQEAHPALDKLTSKIST-LNLERVRQIKSRLVAITGRVQKVRDELE 206 (430)
Q Consensus 148 ~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~-~~Lerlr~lK~~L~~l~~rv~~vr~~l~ 206 (430)
..+...|+.+...|+.+...+...+..+..+ ....++..+++.+...+.++..+++.+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (426)
T 1lrz_A 246 DEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRLQE 305 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888889999998888888766544 4455788888888888887776655443
No 42
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=22.23 E-value=49 Score=31.57 Aligned_cols=15 Identities=7% Similarity=0.067 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHcCc
Q 014152 414 FLYVVAIAWCKHKRL 428 (430)
Q Consensus 414 ~i~~~~~~yfkrk~w 428 (430)
+++.++.++.||+.|
T Consensus 239 ~il~~l~y~~kr~~W 253 (263)
T 2yiu_B 239 IVLAALLYLTNKKLW 253 (263)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 344556677788777
No 43
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=22.03 E-value=4.2e+02 Score=28.50 Aligned_cols=10 Identities=20% Similarity=0.238 Sum_probs=4.3
Q ss_pred HHHHHHHcCc
Q 014152 419 AIAWCKHKRL 428 (430)
Q Consensus 419 ~~~yfkrk~w 428 (430)
++.++++|+|
T Consensus 719 l~~~~~~~~~ 728 (741)
T 3aqp_A 719 LVVAWKNRRK 728 (741)
T ss_dssp HHHHHHHC--
T ss_pred HHHHhhhccc
Confidence 4445555554
No 44
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=21.69 E-value=2.4e+02 Score=28.11 Aligned_cols=25 Identities=16% Similarity=0.470 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014152 183 RVRQIKSRLVAITGRVQKVRDELEH 207 (430)
Q Consensus 183 rlr~lK~~L~~l~~rv~~vr~~l~~ 207 (430)
|+..+...++.+.++++..+..+++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 45
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=20.82 E-value=3.1e+02 Score=21.60 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHH-HHHHHHHH
Q 014152 182 ERVRQIKSRLVA-ITGRVQKV 201 (430)
Q Consensus 182 erlr~lK~~L~~-l~~rv~~v 201 (430)
.+||..|+.|.. +++.++++
T Consensus 72 ~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 72 AKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666 55555544
No 46
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=20.70 E-value=56 Score=30.93 Aligned_cols=14 Identities=14% Similarity=0.275 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHcCc
Q 014152 415 LYVVAIAWCKHKRL 428 (430)
Q Consensus 415 i~~~~~~yfkrk~w 428 (430)
++.++.++.||+.|
T Consensus 218 il~~l~y~~kr~~W 231 (248)
T 3cx5_D 218 SLYLLSIWVKKFKW 231 (248)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 34456667777777
No 47
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=20.27 E-value=4.3e+02 Score=23.02 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 014152 143 LEACLEAACSCLENEAKTLEQEAHPALDKLTSKI 176 (430)
Q Consensus 143 LE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~v 176 (430)
|+-.+..+...+...+..+.....|..++|..++
T Consensus 98 l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~ 131 (185)
T 3r2p_A 98 VQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGA 131 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666666666666666665443
No 48
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=20.23 E-value=6.9e+02 Score=25.89 Aligned_cols=77 Identities=10% Similarity=0.187 Sum_probs=51.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhcCc
Q 014152 138 FEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQK-----VRDELEHLLDDD 212 (430)
Q Consensus 138 FEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~-----vr~~l~~lLddD 212 (430)
=|+..||.++..+....+.|-+.|...+..+-.+-. .-|.++-.-+..+|+....|..-|+. .-|+|++++|=-
T Consensus 146 ~q~~~LekAl~s~~~i~~~e~~~l~~L~~AL~kE~~-~Rt~dE~~mi~~yr~k~~aL~~aIe~Er~~~~EEAIqe~~dms 224 (526)
T 3iyk_A 146 KQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIG-ERTHAETVMVKEYRDKIDALKNAIEVERDGMQEEAIQEIAGMT 224 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcch
Confidence 367889999999999999888888776664433221 22334444466677777777776665 345677777766
Q ss_pred hhH
Q 014152 213 EDM 215 (430)
Q Consensus 213 ~Dm 215 (430)
.|+
T Consensus 225 aeI 227 (526)
T 3iyk_A 225 ADV 227 (526)
T ss_pred HHH
Confidence 664
Done!