BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014154
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 17/169 (10%)
Query: 170 VDISEKFSLFGGKGVEVNV--WDLDKCEKIWTAKPPPKNSLGI-FTPTWFTSAAFLSIDD 226
VDIS + ++ ++ WDL+ ++I + P ++ + F+P D
Sbjct: 86 VDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP------------D 133
Query: 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286
+ GT+ +V ++ + ++ S D R I ++A PD + G G + D
Sbjct: 134 SQYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD 192
Query: 287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335
I TGKLL G IRS+ P ++ + D Y++ +D++ L
Sbjct: 193 IATGKLLHTLEGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 240
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 312 TLPIIASCGLDSYLRFWDIKTRQLLSAV 339
TLPI AS LD+++R WD++ + + ++
Sbjct: 91 TLPIAASSSLDAHIRLWDLENGKQIKSI 118
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Query: 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASV 285
D + +G D + ++D A + + + + PI+++ PDS + + G +
Sbjct: 175 DGKYLASGAIDGIINIFDI-ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY 233
Query: 286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQ 343
D++ L G G S + ++A P S D ++ WD+ TR + F Q
Sbjct: 234 DVQHANLAGTLSGHASW-VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ 290
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC 295
D +RL+D ++ + S D +A PDS + G G + + +GK
Sbjct: 101 DAHIRLWDLENGKQ-IKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS 159
Query: 296 FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
+ I SIA P +AS +D + +DI T +LL +
Sbjct: 160 LDTRGK-FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 202
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 3/127 (2%)
Query: 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLAS 284
D+R+ V+G D+ +R+++ + +S + V P + + G +L
Sbjct: 120 DNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 285 V-DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQ 343
V D+ TG+L+ G + + S+ P + AS D R WD+ + LS +
Sbjct: 180 VWDLATGRLVTDLKGH-TNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGA 238
Query: 344 HLNEVVF 350
+N++ F
Sbjct: 239 PINQICF 245
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290
V+ + DH +RL++ + F + +VA PD+ I G L +++
Sbjct: 83 VSASWDHSLRLWNLQ-NGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGE 141
Query: 291 KLLGCFIGKCSGSIRSIARHPTL--PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEV 348
+ G + + + P+L P+I S G D+ ++ WD+ T +L++ LK H N V
Sbjct: 142 CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTD--LKGHTNYV 199
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 192 DKCEKIWTAKPPPKNSL-GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250
DK K+W +L G + W AF S DD + + ++D V+L++ + Q
Sbjct: 406 DKTVKLWNRNGQLLQTLTGHSSSVW--GVAF-SPDD-QTIASASDDKTVKLWNRNGQL-- 459
Query: 251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI--RTGKLLGCFIGKCSGSIRSIA 308
+ + + ++ VA PD I + D +V + R G+LL G S S+R +A
Sbjct: 460 LQTLTGHSSSVRGVAFSPDGQTIA---SASDDKTVKLWNRNGQLLQTLTGHSS-SVRGVA 515
Query: 309 RHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
P IAS D ++ W+ + QLL +
Sbjct: 516 FSPDGQTIASASDDKTVKLWN-RNGQLLQTL 545
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 8/127 (6%)
Query: 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASV 285
D + + ++D V+L++ + Q + + + + VA PD I + D +V
Sbjct: 150 DGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVWGVAFSPDGQTIA---SASDDKTV 204
Query: 286 DI--RTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQ 343
+ R G+LL G S S+R +A P IAS D ++ W+ + L +
Sbjct: 205 KLWNRNGQLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 263
Query: 344 HLNEVVF 350
+N V F
Sbjct: 264 SVNGVAF 270
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASV 285
D + + ++D V+L++ + Q + + + + VA PD I + D +V
Sbjct: 314 DGQTIASASDDKTVKLWNRNGQH--LQTLTGHSSSVWGVAFSPDGQTIA---SASDDKTV 368
Query: 286 DI--RTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
+ R G+LL G S S+R +A P IAS D ++ W+ + QLL +
Sbjct: 369 KLWNRNGQLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL 422
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASV 285
D + + ++D V+L++ + Q + + + + VA PD I + D +V
Sbjct: 396 DGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVWGVAFSPDDQTIA---SASDDKTV 450
Query: 286 DI--RTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
+ R G+LL G S S+R +A P IAS D ++ W+ + QLL +
Sbjct: 451 KLWNRNGQLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL 504
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%)
Query: 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289
F++G+ D VRL+D R V ++ E I +V PD G+ G D+RT
Sbjct: 221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280
Query: 290 GKLLGCF 296
G L +
Sbjct: 281 GHQLQVY 287
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 5/135 (3%)
Query: 218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFN-IYIG 276
S AF S D+R+ V+G+ D ++L++T + + + + V P+S N I +
Sbjct: 110 SVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 167
Query: 277 NGSGDLASV-DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335
G L V ++ KL IG +G + ++ P + AS G D WD+ +
Sbjct: 168 CGWDKLVKVWNLANCKLKTNHIGH-TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 226
Query: 336 LSAVFLKQHLNEVVF 350
L + +N + F
Sbjct: 227 LYTLDGGDIINALCF 241
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 5/135 (3%)
Query: 218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFN-IYIG 276
S AF S D+R+ V+G+ D ++L++T + + + + V P+S N I +
Sbjct: 133 SVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 190
Query: 277 NGSGDLASV-DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335
G L V ++ KL IG +G + ++ P + AS G D WD+ +
Sbjct: 191 CGWDKLVKVWNLANCKLKTNHIGH-TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 249
Query: 336 LSAVFLKQHLNEVVF 350
L + +N + F
Sbjct: 250 LYTLDGGDIINALCF 264
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 274 YIGNGSGD--LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331
++ +GS D + D+ TG L +G +R + H I SC D LR WD K
Sbjct: 310 FLLSGSRDKTIKMWDVSTGMCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368
Query: 332 TRQLLSAVFLKQHL 345
++ + + +H
Sbjct: 369 NKRCMKTLNAHEHF 382
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 58/129 (44%), Gaps = 3/129 (2%)
Query: 222 LSIDDHRKFVAGTN-DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280
+S D K +A + D ++L+D + + + + +V+ P+ +I +
Sbjct: 156 ISFDHSGKLLASCSADMTIKLWDFQG-FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 214
Query: 281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVF 340
+ +++TG + F G +R + + +IASC D +R W + T++ + +
Sbjct: 215 TIKMWEVQTGYCVKTFTGH-REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 273
Query: 341 LKQHLNEVV 349
+H+ E +
Sbjct: 274 EHRHVVECI 282
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
+V L++ Q V S ETP++A I +G+ + + TG+ + F
Sbjct: 36 RVELWNYETQVE-VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE 94
Query: 298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVF 340
IRSIA HPT P + S D ++ W+ + L F
Sbjct: 95 AH-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 23/122 (18%)
Query: 226 DHRKFVAGTNDHQVRLYD----------TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI 275
D F +G D V+++ T+ Q R V D+ P K Y+
Sbjct: 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP----------YM 201
Query: 276 GNGSGDLAS--VDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333
S DL D +T + G S ++ HPTLPII S D L+ W+ T
Sbjct: 202 ITASDDLTIKIWDYQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 334 QL 335
++
Sbjct: 261 KV 262
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
+V L++ Q V S ETP++A I +G+ + + TG+ + F
Sbjct: 36 RVELWNYETQVE-VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE 94
Query: 298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVF 340
IRSIA HPT P + S D ++ W+ + L F
Sbjct: 95 AH-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 23/122 (18%)
Query: 226 DHRKFVAGTNDHQVRLYD----------TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI 275
D F +G D V+++ T+ Q R V D+ P K Y+
Sbjct: 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP----------YM 201
Query: 276 GNGSGDLAS--VDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333
S DL D +T + G S ++ HPTLPII S D L+ W+ T
Sbjct: 202 ITASDDLTIKIWDYQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 334 QL 335
++
Sbjct: 261 KV 262
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD--LASVDIRTGKLL 293
D +V+++D SA + V ++D + S ++ + GS D L D+ +
Sbjct: 678 DKKVKIWD-SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 736
Query: 294 GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332
G + S+ P ++ASC D LR WD+++
Sbjct: 737 NTMFGH-TNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD--LASVDIRTGKLL 293
D +V+++D SA + V ++D + S ++ + GS D L D+ +
Sbjct: 685 DKKVKIWD-SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 743
Query: 294 GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332
G + S+ P ++ASC D LR WD+++
Sbjct: 744 NTMFGH-TNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 63/164 (38%), Gaps = 13/164 (7%)
Query: 229 KFVA-GTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287
KF+A G D +R++D R+ VM E I ++ P + G+G + D+
Sbjct: 136 KFLATGAEDRLIRIWDIE-NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL 194
Query: 288 RTGKLLGCFIGKCSGSIRSIARHP-TLPIIASCGLDSYLRFWDIKTRQLL--------SA 338
RTG+ + ++A P IA+ LD +R WD +T L+ S
Sbjct: 195 RTGQC--SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG 252
Query: 339 VFLKQHLNEVVFDSXXXXXXXXXXXXXXPMLEIQNGNDTQEDAT 382
K + VVF + +QN N+ + T
Sbjct: 253 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 296
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
+V L++ Q V S ETP++A I +G+ + + TG+ + F
Sbjct: 36 RVELWNYETQVE-VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE 94
Query: 298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVF 340
IRSIA HPT P + S D ++ W+ + L F
Sbjct: 95 AHPD-YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 23/122 (18%)
Query: 226 DHRKFVAGTNDHQVRLYD----------TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI 275
D F +G D V+++ T+ Q R V D+ P K Y+
Sbjct: 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP----------YM 201
Query: 276 GNGSGDLAS--VDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333
S DL D +T + G S ++ HPTLPII S D L+ W+ T
Sbjct: 202 ITASDDLTIKIWDYQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 334 QL 335
++
Sbjct: 261 KV 262
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 30/160 (18%)
Query: 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIK--------- 262
TP+ F ++ + I + G N+ V++ + S RP+ +F+ + + I
Sbjct: 194 TPSQFATS--VDISERGLIATGFNNGTVQISELST-LRPLYNFESQHSMINNSNSIRSVK 250
Query: 263 --------AVAEEPDSF---NIY---IGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIA 308
A+A + +SF +Y G G L+ + LG F S + S++
Sbjct: 251 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH--SSWVMSLS 308
Query: 309 RHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEV 348
+ + + S G D LRFWD+KT++ ++ L H +++
Sbjct: 309 FNDSGETLCSAGWDGKLRFWDVKTKERITT--LNMHCDDI 346
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 30/160 (18%)
Query: 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIK--------- 262
TP+ F ++ + I + G N+ V++ + S RP+ +F+ + + I
Sbjct: 184 TPSQFATS--VDISERGLIATGFNNGTVQISELST-LRPLYNFESQHSMINNSNSIRSVK 240
Query: 263 --------AVAEEPDSF---NIY---IGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIA 308
A+A + +SF +Y G G L+ + LG F S + S++
Sbjct: 241 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH--SSWVMSLS 298
Query: 309 RHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEV 348
+ + + S G D LRFWD+KT++ ++ L H +++
Sbjct: 299 FNDSGETLCSAGWDGKLRFWDVKTKERITT--LNMHCDDI 336
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 242 YDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS 301
Y+T + R S ETP++A I +G+ + + TG+ + F
Sbjct: 42 YETQVEVR---SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD 98
Query: 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVF 340
IRSIA HPT P + S D ++ W+ + L F
Sbjct: 99 -YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 23/122 (18%)
Query: 226 DHRKFVAGTNDHQVRLYD----------TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI 275
D F +G D V+++ T+ Q R V D+ P K Y+
Sbjct: 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP----------YM 201
Query: 276 GNGSGDLAS--VDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333
S DL D +T + G S ++ HPTLPII S D L+ W+ T
Sbjct: 202 ITASDDLTIKIWDYQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 334 QL 335
++
Sbjct: 261 KV 262
>pdb|3T5N|A Chain A, 1.8a Crystal Structure Of Lassa Virus Nucleoprotein In
Complex With Ssrna
Length = 354
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 251 VMSFDFRETPIKAV-AEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR 309
+++ D + K + E P S +Y+GN L+S + + L IG G+
Sbjct: 115 ILAADLEKLKSKVIRTERPLSAGVYMGN----LSSQQLDQRRALLNMIGMSGGNQG---- 166
Query: 310 HPTLPIIASCGLDSYLRFWDIKTRQLLSAVF 340
A G D +R WD+K +LLS F
Sbjct: 167 -------ARAGRDGVVRVWDVKNAELLSNQF 190
>pdb|3T5Q|A Chain A, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|B Chain B, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|E Chain E, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|G Chain G, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|I Chain I, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|K Chain K, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
Length = 353
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 251 VMSFDFRETPIKAV-AEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR 309
+++ D + K + E P S +Y+GN L+S + + L IG G+
Sbjct: 114 ILAADLEKLKSKVIRTERPLSAGVYMGN----LSSQQLDQRRALLNMIGMSGGNQG---- 165
Query: 310 HPTLPIIASCGLDSYLRFWDIKTRQLLSAVF 340
A G D +R WD+K +LLS F
Sbjct: 166 -------ARAGRDGVVRVWDVKNAELLSNQF 189
>pdb|3R3L|A Chain A, Structure Of Np Protein From Lassa Av Strain
pdb|3R3L|B Chain B, Structure Of Np Protein From Lassa Av Strain
pdb|3R3L|C Chain C, Structure Of Np Protein From Lassa Av Strain
Length = 582
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 15/75 (20%)
Query: 266 EEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYL 325
E P S +Y+GN L+S + + L IG +GS S A G D +
Sbjct: 117 ERPLSSGVYMGN----LSSQQLDQRRALLNLIGMTNGSQGSQA-----------GRDGVV 161
Query: 326 RFWDIKTRQLLSAVF 340
R WD+K +LL+ F
Sbjct: 162 RVWDVKNAELLNNQF 176
>pdb|1G03|A Chain A, Nmr Structure Of N-Terminal Domain Of Htlv-I Ca1-134
Length = 134
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 55 LAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPE 102
L AS+ Q D L++ A G+T NPL G LRV +N G + E
Sbjct: 66 LVASLHHQQLDSLISEAETRGITS-YNPLAGPLRVQANNPQQQGLRRE 112
>pdb|2ZRU|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn
pdb|2ZRU|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn
pdb|2ZRU|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn
pdb|2ZRU|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn
pdb|2ZRV|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn.
pdb|2ZRV|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn.
pdb|2ZRV|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn.
pdb|2ZRV|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn.
pdb|2ZRW|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Ipp.
pdb|2ZRW|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Ipp.
pdb|2ZRW|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Ipp.
pdb|2ZRW|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Ipp.
pdb|2ZRX|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Dmapp.
pdb|2ZRX|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Dmapp.
pdb|2ZRX|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Dmapp.
pdb|2ZRX|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Dmapp.
pdb|2ZRY|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp.
pdb|2ZRY|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp.
pdb|2ZRY|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp.
pdb|2ZRY|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp.
pdb|2ZRZ|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp
pdb|2ZRZ|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp
pdb|2ZRZ|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp
pdb|2ZRZ|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp
pdb|3B03|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Vipp.
pdb|3B03|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Vipp.
pdb|3B03|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Vipp.
pdb|3B03|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Vipp.
pdb|3B04|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Oipp.
pdb|3B04|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Oipp.
pdb|3B04|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Oipp.
pdb|3B04|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Oipp.
pdb|3B05|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp At 2.2a Resolution.
pdb|3B05|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp At 2.2a Resolution.
pdb|3B05|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp At 2.2a Resolution.
pdb|3B05|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp At 2.2a Resolution.
pdb|3B06|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp.
pdb|3B06|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp.
pdb|3B06|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp.
pdb|3B06|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp.
pdb|3VKJ|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase, Octameric Form
pdb|3VKJ|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase, Octameric Form
pdb|3VKJ|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase, Octameric Form
pdb|3VKJ|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase, Octameric Form
Length = 368
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL 321
K +AE + F I +G GS +A I + F +R +A PT+PIIA+ G+
Sbjct: 79 KIIAEVAEKFGIPMGVGSQRVA---IEKAEARESF-----AIVRKVA--PTIPIIANLGM 128
Query: 322 DSYLRFWDIK----TRQLLSAVFLKQHLN 346
++ + +K Q++ A + HLN
Sbjct: 129 PQLVKGYGLKEFQDAIQMIEADAIAVHLN 157
>pdb|3MWP|A Chain A, Nucleoprotein Structure Of Lassa Fever Virus
pdb|3MWP|B Chain B, Nucleoprotein Structure Of Lassa Fever Virus
pdb|3MWP|C Chain C, Nucleoprotein Structure Of Lassa Fever Virus
pdb|3MWT|A Chain A, Crystal Structure Of Lassa Fever Virus Nucleoprotein In
Complex With Mn2+
pdb|3MWT|B Chain B, Crystal Structure Of Lassa Fever Virus Nucleoprotein In
Complex With Mn2+
pdb|3MWT|C Chain C, Crystal Structure Of Lassa Fever Virus Nucleoprotein In
Complex With Mn2+
pdb|3MX2|A Chain A, Lassa Fever Virus Nucleoprotein Complexed With Dttp
pdb|3MX2|B Chain B, Lassa Fever Virus Nucleoprotein Complexed With Dttp
pdb|3MX2|C Chain C, Lassa Fever Virus Nucleoprotein Complexed With Dttp
pdb|3MX5|A Chain A, Lassa Fever Virus Nucleoprotein Complexed With Utp
pdb|3MX5|B Chain B, Lassa Fever Virus Nucleoprotein Complexed With Utp
pdb|3MX5|C Chain C, Lassa Fever Virus Nucleoprotein Complexed With Utp
Length = 577
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 251 VMSFDFRETPIKAV-AEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR 309
+++ D + K + E P S +Y+GN L+S + + L IG G+
Sbjct: 109 ILAADLEKLKSKVIRTERPLSAGVYMGN----LSSQQLDQRRALLNMIGMSGGNQG---- 160
Query: 310 HPTLPIIASCGLDSYLRFWDIKTRQLLSAVF 340
A G D +R WD+K +LL+ F
Sbjct: 161 -------ARAGRDGVVRVWDVKNAELLNNQF 184
>pdb|1QRJ|B Chain B, Solution Structure Of Htlv-I Capsid Protein
Length = 199
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 55 LAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPE 102
L AS+ Q D L++ A G+T NPL G LRV +N G + E
Sbjct: 51 LVASLHHQQLDSLISEAETRGITGY-NPLAGPLRVQANNPQQQGLRRE 97
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASV 285
D R+ V+G D V+++D + + + + + D ++ G+ +
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETE---TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVW 304
Query: 286 DIRTGKLLGCFIGKCSGSIRSIARHPTLP--IIASCGLDSYLRFWDIKTRQLLSAV 339
D+ TG + G +S+ L I+ S DS ++ WDIKT Q L +
Sbjct: 305 DVETGNCIHTLTGH-----QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTL 355
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Query: 230 FVAGTNDHQVRLYDTSAQR--RPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVD 286
F + +D ++ ++DT + +P S D + ++ P S F + G+ +A D
Sbjct: 243 FGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 302
Query: 287 IRTGKLLGCFIGKCSGSIRSIARHP-TLPIIASCGLDSYLRFWDI 330
+R KL I + P I+AS G D L WD+
Sbjct: 303 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 316 IASCGLDSYLRFWDIKTRQLLSAV 339
I SCG+D L+ W I ++++++A+
Sbjct: 212 IMSCGMDHSLKLWRINSKRMMNAI 235
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 18 LTFDSLGLIKVIEARGEHGGVPKVVERW--GDPHSSNCVLAASIDDSQNDPLLAVARKNG 75
L F ++G +V G ++++ + D + A + D + + PLLAVA G
Sbjct: 72 LVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG 131
Query: 76 LTDILNPL 83
+ I+NP+
Sbjct: 132 IIRIINPI 139
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 7/125 (5%)
Query: 222 LSIDDHRKFVAGTN-DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280
S DD +F+A + D +V++++ S V ++D + S ++ + GS
Sbjct: 671 FSTDD--RFIATCSVDKKVKIWN-SMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSS 727
Query: 281 D--LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338
D L D+ + G + S+ P ++ASC D L+ WD + +
Sbjct: 728 DCFLKLWDLNQKECRNTMFGH-TNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKS 786
Query: 339 VFLKQ 343
+ +KQ
Sbjct: 787 INVKQ 791
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 316 IASCGLDSYLRFWDIKTRQLLSAV 339
I SCG+D L+ W I ++++++A+
Sbjct: 175 IMSCGMDHSLKLWRINSKRMMNAI 198
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 18 LTFDSLGLIKVIEARGEHGGVPKVVERW--GDPHSSNCVLAASIDDSQNDPLLAVARKNG 75
L F ++G +V G ++++ + D + A + D + + PLLAVA G
Sbjct: 35 LVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG 94
Query: 76 LTDILNPL 83
+ I+NP+
Sbjct: 95 IIRIINPI 102
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 316 IASCGLDSYLRFWDIKTRQLLSAV 339
I SCG+D L+ W I ++++++A+
Sbjct: 176 IMSCGMDHSLKLWRINSKRMMNAI 199
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 18 LTFDSLGLIKVIEARGEHGGVPKVVERW--GDPHSSNCVLAASIDDSQNDPLLAVARKNG 75
L F ++G +V G ++++ + D + A + D + + PLLAVA G
Sbjct: 36 LVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG 95
Query: 76 LTDILNPL 83
+ I+NP+
Sbjct: 96 IIRIINPI 103
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 316 IASCGLDSYLRFWDIKTRQLLSAV 339
I SCG+D L+ W I ++++++A+
Sbjct: 175 IMSCGMDHSLKLWRINSKRMMNAI 198
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 18 LTFDSLGLIKVIEARGEHGGVPKVVERW--GDPHSSNCVLAASIDDSQNDPLLAVARKNG 75
L F ++G +V G ++++ + D + A + D + + PLLAVA G
Sbjct: 35 LVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG 94
Query: 76 LTDILNPL 83
+ I+NP+
Sbjct: 95 IIRIINPI 102
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 316 IASCGLDSYLRFWDIKTRQLLSAV 339
I SCG+D L+ W I ++++++A+
Sbjct: 171 IMSCGMDHSLKLWRINSKRMMNAI 194
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 18 LTFDSLGLIKVIEARGEHGGVPKVVERW--GDPHSSNCVLAASIDDSQNDPLLAVARKNG 75
L F ++G +V G ++++ + D + A + D + + PLLAVA G
Sbjct: 31 LVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG 90
Query: 76 LTDILNPL 83
+ I+NP+
Sbjct: 91 IIRIINPI 98
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289
V+G+ D VR++D + + + P+ AV D I + G D +
Sbjct: 144 IVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202
Query: 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE 347
G+ L I + + + P I + LD+ L+ WD + L H NE
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--YTGHKNE 258
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
I VA DS + + L D+ +GK L G S + +P +I S
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 148
Query: 321 LDSYLRFWDIKTRQLLSAV 339
D +R WD+KT + L +
Sbjct: 149 FDESVRIWDVKTGKCLKTL 167
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289
V+G+ D VR++D + + + P+ AV D I + G D +
Sbjct: 146 IVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 204
Query: 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE 347
G+ L I + + + P I + LD+ L+ WD + L H NE
Sbjct: 205 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--YTGHKNE 260
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
I VA DS + + L D+ +GK L G S + +P +I S
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 150
Query: 321 LDSYLRFWDIKTRQLLSAV 339
D +R WD+KT + L +
Sbjct: 151 FDESVRIWDVKTGKCLKTL 169
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289
V+G+ D VR++D + + + P+ AV D I + G D +
Sbjct: 128 IVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE 347
G+ L I + + + P I + LD+ L+ WD + L H NE
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--YTGHKNE 242
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
I VA DS + + L D+ +GK L G S + +P +I S
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 132
Query: 321 LDSYLRFWDIKTRQLLSAV 339
D +R WD+KT + L +
Sbjct: 133 FDESVRIWDVKTGKCLKTL 151
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289
V+G+ D VR++D + + + P+ AV D I + G D +
Sbjct: 128 IVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE 347
G+ L I + + + P I + LD+ L+ WD + L H NE
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--YTGHKNE 242
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
I VA DS + + L D+ +GK L G S + +P +I S
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 132
Query: 321 LDSYLRFWDIKTRQLLSAV 339
D +R WD+KT + L +
Sbjct: 133 FDESVRIWDVKTGKCLKTL 151
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289
V+G+ D VR++D + + + P+ AV D I + G D +
Sbjct: 122 IVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE 347
G+ L I + + + P I + LD+ L+ WD + L H NE
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--YTGHKNE 236
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
I VA DS + + L D+ +GK L G S + +P +I S
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 126
Query: 321 LDSYLRFWDIKTRQLLSAV 339
D +R WD+KT + L +
Sbjct: 127 FDESVRIWDVKTGKCLKTL 145
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289
V+G+ D VR++D + + + P+ AV D I + G D +
Sbjct: 127 IVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 185
Query: 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE 347
G+ L I + + + P I + LD+ L+ WD + L H NE
Sbjct: 186 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--YTGHKNE 241
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
I VA DS + + L D+ +GK L G S + +P +I S
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 131
Query: 321 LDSYLRFWDIKTRQLLSAV 339
D +R WD+KT + L +
Sbjct: 132 FDESVRIWDVKTGKCLKTL 150
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289
V+G+ D VR++D + + + P+ AV D I + G D +
Sbjct: 118 IVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 176
Query: 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE 347
G+ L I + + + P I + LD+ L+ WD + L H NE
Sbjct: 177 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--YTGHKNE 232
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
I VA DS + + L D+ +GK L G S + +P +I S
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 122
Query: 321 LDSYLRFWDIKTRQLLSAV 339
D +R WD+KT + L +
Sbjct: 123 FDESVRIWDVKTGKCLKTL 141
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289
V+G+ D VR++D + + + P+ AV D I + G D +
Sbjct: 121 IVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 179
Query: 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE 347
G+ L I + + + P I + LD+ L+ WD + L H NE
Sbjct: 180 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--YTGHKNE 235
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
I VA DS + + L D+ +GK L G S + +P +I S
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 125
Query: 321 LDSYLRFWDIKTRQLLSAV 339
D +R WD+KT + L +
Sbjct: 126 FDESVRIWDVKTGKCLKTL 144
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289
V+G+ D VR++D + + + P+ AV D I + G D +
Sbjct: 123 IVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 181
Query: 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE 347
G+ L I + + + P I + LD+ L+ WD + L H NE
Sbjct: 182 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--YTGHKNE 237
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
I VA DS + + L D+ +GK L G S + +P +I S
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 127
Query: 321 LDSYLRFWDIKTRQLLSAV 339
D +R WD+KT + L +
Sbjct: 128 FDESVRIWDVKTGKCLKTL 146
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
I VA DS + + L D+ +GK L G S + +P +I S
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 126
Query: 321 LDSYLRFWDIKTRQLLSAV 339
D +R WD+KT + L +
Sbjct: 127 FDESVRIWDVKTGKCLKTL 145
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289
V+G+ D VR++D + + + P+ AV D I + G D +
Sbjct: 122 IVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE 347
G+ L I + + + P I + LD+ L+ WD + L H NE
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--YTGHKNE 236
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289
V+G+ D VR++D + + + P+ AV D I + G D +
Sbjct: 128 IVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE 347
G+ L I + + + P I + LD+ L+ WD + L H NE
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--YTGHKNE 242
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
I VA DS + + L D+ +GK L G S + +P +I S
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 132
Query: 321 LDSYLRFWDIKTRQLLSAV 339
D +R WD+KT + L +
Sbjct: 133 FDESVRIWDVKTGKCLKTL 151
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
I VA DS + + L D+ +GK L G S + +P +I S
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 143
Query: 321 LDSYLRFWDIKTRQLLSAV 339
D +R WD+KT + L +
Sbjct: 144 FDESVRIWDVKTGKCLKTL 162
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289
V+G+ D VR++D + + + P+ AV D I + G D +
Sbjct: 139 IVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 197
Query: 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE 347
G+ L I + + + P I + LD+ L+ WD + L H NE
Sbjct: 198 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--YTGHKNE 253
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
I VA DS + + L D+ +GK L G S + +P +I S
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 129
Query: 321 LDSYLRFWDIKTRQLLSAV 339
D +R WD+KT + L +
Sbjct: 130 FDESVRIWDVKTGKCLKTL 148
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 3/117 (2%)
Query: 231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290
V+G+ D VR++D + + + P+ AV D I + G D +G
Sbjct: 126 VSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 291 KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE 347
+ L I + + + P I + LD+ L+ WD + L H NE
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--YTGHKNE 239
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
I VA DS + + L D+ +GK L G S + +P +I S
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 129
Query: 321 LDSYLRFWDIKTRQLLSAV 339
D +R WD+KT + L +
Sbjct: 130 FDESVRIWDVKTGKCLKTL 148
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 3/117 (2%)
Query: 231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290
V+G+ D VR++D + + + P+ AV D I + G D +G
Sbjct: 126 VSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 291 KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE 347
+ L I + + + P I + LD+ L+ WD + L H NE
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--YTGHKNE 239
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
I VA DS + + L D+ +GK L G S + +P +I S
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 129
Query: 321 LDSYLRFWDIKTRQLLSAV 339
D +R WD+KT + L +
Sbjct: 130 FDESVRIWDVKTGKCLKTL 148
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 3/117 (2%)
Query: 231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290
V+G+ D VR++D + + + P+ AV D I + G D +G
Sbjct: 126 VSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 291 KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE 347
+ L I + + + P I + LD+ L+ WD + L H NE
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--YTGHKNE 239
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
I VA DS + + L D+ +GK L G S + +P +I S
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 129
Query: 321 LDSYLRFWDIKTRQLLSAV 339
D +R WD+KT L +
Sbjct: 130 FDESVRIWDVKTGMCLKTL 148
>pdb|3RGA|A Chain A, Crystal Structure Of Epoxide Hydrolase For Polyether
Lasalocid A Biosynthesis
Length = 283
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 1 MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS 51
+P T T+ PG PP R +G+I+V GE G + ++ WG SS
Sbjct: 82 LPATVTVGAPGAPPQRRGRTRVMGVIEV----GEDGLIREMRVMWGVTDSS 128
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
I VA DS + + L D+ +GK L G S + +P +I S
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 129
Query: 321 LDSYLRFWDIKTRQLLSAV 339
D +R WD+KT L +
Sbjct: 130 FDESVRIWDVKTGMCLKTL 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,170,520
Number of Sequences: 62578
Number of extensions: 418421
Number of successful extensions: 1038
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 939
Number of HSP's gapped (non-prelim): 136
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)