Query 014154
Match_columns 430
No_of_seqs 605 out of 3230
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 02:22:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.4E-49 3.1E-54 331.9 25.9 317 15-373 128-479 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 5.3E-45 1.2E-49 308.3 21.1 281 49-373 175-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 3.8E-42 8.3E-47 287.5 24.1 293 40-377 106-441 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 2E-41 4.4E-46 286.6 21.3 271 14-329 187-458 (459)
5 KOG0286 G-protein beta subunit 100.0 1.1E-38 2.3E-43 258.0 32.3 292 41-373 47-343 (343)
6 KOG0279 G protein beta subunit 100.0 2.2E-38 4.9E-43 254.6 29.1 296 40-375 6-313 (315)
7 KOG0315 G-protein beta subunit 100.0 1.3E-37 2.8E-42 246.2 31.1 295 10-354 6-308 (311)
8 KOG0319 WD40-repeat-containing 100.0 1.4E-38 3E-43 286.9 27.7 341 15-376 118-620 (775)
9 KOG0318 WD40 repeat stress pro 100.0 9.5E-37 2.1E-41 265.1 33.8 337 13-375 159-602 (603)
10 KOG0315 G-protein beta subunit 100.0 1.7E-36 3.7E-41 239.9 28.5 274 66-378 11-291 (311)
11 KOG0295 WD40 repeat-containing 100.0 2.8E-37 6E-42 256.9 24.1 291 40-374 99-405 (406)
12 KOG0284 Polyadenylation factor 100.0 4E-38 8.8E-43 265.5 17.0 282 54-377 99-382 (464)
13 KOG0286 G-protein beta subunit 100.0 9.4E-36 2E-40 241.0 29.2 273 15-329 68-343 (343)
14 KOG0263 Transcription initiati 100.0 3.3E-37 7.2E-42 280.7 21.5 207 158-380 447-654 (707)
15 KOG0279 G protein beta subunit 100.0 1.5E-35 3.2E-40 238.4 28.2 277 13-331 27-313 (315)
16 KOG0285 Pleiotropic regulator 100.0 2.4E-36 5.2E-41 250.8 24.1 293 40-376 142-440 (460)
17 KOG0296 Angio-associated migra 100.0 7.7E-36 1.7E-40 248.5 26.0 319 6-375 66-398 (399)
18 KOG0319 WD40-repeat-containing 100.0 1.3E-35 2.7E-40 268.0 28.7 343 12-377 72-579 (775)
19 KOG0273 Beta-transducin family 100.0 2.9E-35 6.3E-40 252.6 28.6 282 2-331 233-523 (524)
20 KOG0273 Beta-transducin family 100.0 1.7E-34 3.7E-39 248.0 29.9 313 16-374 193-522 (524)
21 KOG0318 WD40 repeat stress pro 100.0 1.1E-33 2.3E-38 246.2 35.1 326 24-377 39-562 (603)
22 KOG0281 Beta-TrCP (transducin 100.0 3.3E-37 7.2E-42 255.1 12.4 271 10-336 203-482 (499)
23 KOG0295 WD40 repeat-containing 100.0 5.4E-35 1.2E-39 243.3 23.9 271 15-330 121-405 (406)
24 KOG0291 WD40-repeat-containing 100.0 2.3E-33 5.1E-38 253.9 35.6 332 13-377 106-510 (893)
25 PLN00181 protein SPA1-RELATED; 100.0 2.6E-33 5.7E-38 280.7 37.8 313 23-374 457-792 (793)
26 KOG0291 WD40-repeat-containing 100.0 4E-33 8.7E-38 252.3 32.3 326 5-377 266-614 (893)
27 cd00200 WD40 WD40 domain, foun 100.0 2.7E-32 6E-37 242.2 35.5 286 43-373 3-289 (289)
28 KOG0263 Transcription initiati 100.0 1.9E-34 4E-39 262.9 21.1 203 101-333 449-651 (707)
29 KOG0265 U5 snRNP-specific prot 100.0 5.8E-33 1.2E-37 225.7 26.2 288 40-372 38-335 (338)
30 KOG0284 Polyadenylation factor 100.0 8.8E-35 1.9E-39 245.4 15.9 271 15-331 109-380 (464)
31 KOG0276 Vesicle coat complex C 100.0 2E-33 4.2E-38 249.3 24.5 284 44-371 8-295 (794)
32 KOG0266 WD40 repeat-containing 100.0 2.3E-32 4.9E-37 255.3 31.8 287 49-376 159-455 (456)
33 KOG0306 WD40-repeat-containing 100.0 1.7E-32 3.7E-37 248.1 27.9 315 21-376 341-665 (888)
34 KOG0316 Conserved WD40 repeat- 100.0 3.7E-32 8E-37 213.7 23.4 285 41-373 9-297 (307)
35 KOG0276 Vesicle coat complex C 100.0 1.2E-31 2.5E-36 238.1 27.5 329 5-378 14-383 (794)
36 KOG0313 Microtubule binding pr 100.0 1.4E-31 3.1E-36 224.2 25.8 284 65-376 115-419 (423)
37 KOG0313 Microtubule binding pr 100.0 3.7E-31 8.1E-36 221.7 26.6 283 14-331 115-418 (423)
38 KOG0293 WD40 repeat-containing 100.0 1.1E-31 2.4E-36 227.1 23.5 293 41-377 216-515 (519)
39 KOG0282 mRNA splicing factor [ 100.0 8E-33 1.7E-37 238.6 16.7 291 40-373 205-503 (503)
40 KOG0645 WD40 repeat protein [G 100.0 3.1E-30 6.7E-35 207.0 29.5 292 41-375 6-311 (312)
41 KOG0265 U5 snRNP-specific prot 100.0 1.1E-30 2.3E-35 212.6 24.9 269 15-328 60-335 (338)
42 cd00200 WD40 WD40 domain, foun 100.0 6.4E-30 1.4E-34 226.9 32.5 268 15-329 22-289 (289)
43 KOG0281 Beta-TrCP (transducin 100.0 7.5E-33 1.6E-37 229.4 12.4 272 54-379 200-481 (499)
44 KOG0292 Vesicle coat complex C 100.0 7.4E-31 1.6E-35 241.5 25.6 280 54-375 12-321 (1202)
45 KOG0285 Pleiotropic regulator 100.0 5.8E-31 1.3E-35 218.9 21.8 244 101-378 149-392 (460)
46 KOG0275 Conserved WD40 repeat- 100.0 2.9E-31 6.4E-36 218.1 19.7 280 62-373 222-507 (508)
47 KOG0282 mRNA splicing factor [ 100.0 1E-31 2.2E-36 231.8 17.6 269 16-329 229-503 (503)
48 KOG0306 WD40-repeat-containing 100.0 4.1E-30 9E-35 232.8 28.5 281 15-335 385-668 (888)
49 KOG1407 WD40 repeat protein [F 100.0 5.8E-30 1.3E-34 204.4 25.0 279 43-366 14-293 (313)
50 KOG0278 Serine/threonine kinas 100.0 3.2E-31 7E-36 210.2 17.2 291 44-379 9-301 (334)
51 KOG0277 Peroxisomal targeting 100.0 2.8E-30 6E-35 205.4 21.3 266 73-374 36-308 (311)
52 KOG1446 Histone H3 (Lys4) meth 100.0 1.7E-28 3.7E-33 201.6 32.4 289 42-375 7-303 (311)
53 KOG1408 WD40 repeat protein [F 100.0 5.1E-30 1.1E-34 231.0 25.3 354 3-376 259-714 (1080)
54 KOG0293 WD40 repeat-containing 100.0 2.8E-30 6E-35 218.7 21.3 274 15-332 237-514 (519)
55 KOG1539 WD repeat protein [Gen 100.0 3.5E-29 7.5E-34 229.4 29.7 337 15-375 173-648 (910)
56 KOG0643 Translation initiation 100.0 7.8E-30 1.7E-34 204.3 22.2 286 45-376 6-318 (327)
57 KOG0274 Cdc4 and related F-box 100.0 2.4E-29 5.1E-34 234.2 29.1 279 7-339 211-490 (537)
58 KOG0292 Vesicle coat complex C 100.0 3.9E-29 8.5E-34 230.3 29.1 290 4-331 9-321 (1202)
59 KOG0316 Conserved WD40 repeat- 100.0 1.5E-29 3.3E-34 199.0 22.5 265 15-329 30-297 (307)
60 PLN00181 protein SPA1-RELATED; 100.0 1.4E-28 3E-33 246.8 35.4 274 15-330 496-792 (793)
61 KOG0266 WD40 repeat-containing 100.0 4.7E-29 1E-33 233.0 29.9 275 15-331 172-454 (456)
62 KOG0283 WD40 repeat-containing 100.0 9.6E-30 2.1E-34 234.1 22.4 306 42-376 259-577 (712)
63 KOG0645 WD40 repeat protein [G 100.0 1.5E-28 3.3E-33 197.3 26.1 244 101-376 12-262 (312)
64 KOG0268 Sof1-like rRNA process 100.0 2.6E-30 5.6E-35 215.5 15.8 288 40-378 57-348 (433)
65 KOG0296 Angio-associated migra 100.0 3.7E-28 8E-33 202.9 26.2 292 41-378 56-359 (399)
66 KOG0288 WD40 repeat protein Ti 100.0 1.4E-29 2.9E-34 214.5 17.6 268 15-373 188-459 (459)
67 KOG0294 WD40 repeat-containing 100.0 8E-28 1.7E-32 197.2 27.3 273 15-333 2-283 (362)
68 KOG0278 Serine/threonine kinas 100.0 2.4E-29 5.2E-34 199.6 17.5 278 9-336 23-302 (334)
69 KOG0289 mRNA splicing factor [ 100.0 4.7E-28 1E-32 206.5 25.7 281 54-374 222-505 (506)
70 KOG0268 Sof1-like rRNA process 100.0 1.2E-29 2.5E-34 211.6 15.5 279 8-338 70-352 (433)
71 KOG0310 Conserved WD40 repeat- 100.0 2.5E-28 5.4E-33 211.3 24.0 278 50-374 27-308 (487)
72 KOG0277 Peroxisomal targeting 100.0 1.2E-28 2.5E-33 196.2 19.7 267 23-330 37-308 (311)
73 KOG2096 WD40 repeat protein [G 100.0 2.5E-27 5.4E-32 194.6 25.1 320 26-378 63-405 (420)
74 KOG0301 Phospholipase A2-activ 100.0 3.5E-28 7.5E-33 218.7 21.7 287 39-378 4-291 (745)
75 KOG0275 Conserved WD40 repeat- 100.0 1.3E-28 2.9E-33 202.6 17.5 281 5-329 214-507 (508)
76 KOG0305 Anaphase promoting com 100.0 2.3E-27 4.9E-32 213.0 26.3 267 17-377 190-463 (484)
77 PTZ00420 coronin; Provisional 100.0 2.2E-26 4.7E-31 215.2 33.1 258 19-359 49-319 (568)
78 KOG0308 Conserved WD40 repeat- 100.0 5E-28 1.1E-32 216.1 20.5 295 58-376 30-328 (735)
79 KOG0274 Cdc4 and related F-box 100.0 2.8E-27 6.1E-32 220.4 26.4 265 66-378 219-485 (537)
80 KOG0772 Uncharacterized conser 100.0 1E-27 2.2E-32 208.7 21.7 288 15-330 180-486 (641)
81 KOG0300 WD40 repeat-containing 100.0 2.2E-27 4.7E-32 194.9 22.2 317 13-376 123-477 (481)
82 KOG0973 Histone transcription 100.0 1.5E-27 3.3E-32 225.2 24.3 295 15-377 26-357 (942)
83 PTZ00421 coronin; Provisional 100.0 1.2E-26 2.5E-31 216.1 29.8 204 160-377 73-292 (493)
84 KOG1407 WD40 repeat protein [F 100.0 2.8E-26 6E-31 183.4 26.2 264 11-323 29-294 (313)
85 KOG0772 Uncharacterized conser 100.0 3.7E-27 8.1E-32 205.2 23.1 306 45-375 163-487 (641)
86 PTZ00421 coronin; Provisional 100.0 1E-25 2.2E-30 209.7 34.0 281 52-359 23-316 (493)
87 KOG0640 mRNA cleavage stimulat 100.0 5.1E-27 1.1E-31 192.1 20.6 291 45-375 108-426 (430)
88 KOG0643 Translation initiation 100.0 5.4E-27 1.2E-31 188.1 20.3 276 15-332 23-318 (327)
89 KOG0310 Conserved WD40 repeat- 100.0 2.2E-26 4.7E-31 199.3 25.2 271 9-329 35-307 (487)
90 PTZ00420 coronin; Provisional 100.0 1.3E-25 2.7E-30 210.0 31.9 202 160-376 72-294 (568)
91 KOG0264 Nucleosome remodeling 100.0 2.2E-26 4.7E-31 197.8 22.0 254 103-377 124-406 (422)
92 KOG0289 mRNA splicing factor [ 100.0 1.4E-25 2.9E-30 191.6 26.4 270 15-330 232-505 (506)
93 KOG0299 U3 snoRNP-associated p 99.9 2.2E-25 4.8E-30 191.7 25.4 300 42-376 135-457 (479)
94 KOG0308 Conserved WD40 repeat- 99.9 3.3E-26 7.1E-31 204.6 20.6 331 12-376 34-394 (735)
95 KOG3881 Uncharacterized conser 99.9 4.9E-25 1.1E-29 186.0 24.3 275 56-349 60-338 (412)
96 KOG2106 Uncharacterized conser 99.9 8.5E-24 1.8E-28 184.0 32.0 321 17-378 216-584 (626)
97 KOG0264 Nucleosome remodeling 99.9 2.9E-25 6.3E-30 190.9 22.0 246 66-331 138-404 (422)
98 KOG1408 WD40 repeat protein [F 99.9 3.3E-25 7.2E-30 200.2 23.1 285 13-332 391-714 (1080)
99 KOG0639 Transducin-like enhanc 99.9 1.1E-25 2.3E-30 195.6 18.7 285 48-374 418-703 (705)
100 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.2E-23 4.9E-28 186.8 34.5 285 16-356 3-300 (300)
101 KOG0301 Phospholipase A2-activ 99.9 9.7E-25 2.1E-29 196.7 25.1 262 14-331 25-288 (745)
102 KOG1446 Histone H3 (Lys4) meth 99.9 1.5E-23 3.2E-28 172.7 29.9 270 15-331 27-303 (311)
103 KOG1036 Mitotic spindle checkp 99.9 1.9E-24 4.1E-29 177.1 24.3 265 53-364 15-293 (323)
104 KOG0647 mRNA export protein (c 99.9 1.8E-24 3.9E-29 176.6 23.3 272 47-363 25-311 (347)
105 KOG0640 mRNA cleavage stimulat 99.9 6.2E-25 1.4E-29 179.9 20.7 285 13-331 123-426 (430)
106 KOG1539 WD repeat protein [Gen 99.9 2E-23 4.3E-28 192.0 32.3 332 15-377 125-608 (910)
107 KOG1063 RNA polymerase II elon 99.9 2.4E-24 5.2E-29 194.1 25.2 336 13-378 205-651 (764)
108 KOG0641 WD40 repeat protein [G 99.9 9.8E-23 2.1E-27 159.9 30.1 293 54-375 35-349 (350)
109 KOG2106 Uncharacterized conser 99.9 1.2E-23 2.6E-28 183.0 27.4 324 13-374 256-625 (626)
110 KOG1332 Vesicle coat complex C 99.9 1.2E-24 2.6E-29 172.5 19.2 240 13-331 22-286 (299)
111 KOG0646 WD40 repeat protein [G 99.9 2.9E-24 6.3E-29 185.2 22.8 284 23-357 17-330 (476)
112 KOG0299 U3 snoRNP-associated p 99.9 4.1E-24 8.9E-29 184.0 23.5 269 15-328 155-453 (479)
113 KOG0267 Microtubule severing p 99.9 2.4E-26 5.3E-31 207.8 10.3 258 66-370 5-262 (825)
114 KOG2055 WD40 repeat protein [G 99.9 4.1E-24 8.9E-29 184.0 22.8 293 48-375 210-512 (514)
115 KOG4283 Transcription-coupled 99.9 2.5E-23 5.4E-28 169.5 26.0 294 46-374 40-364 (397)
116 KOG1332 Vesicle coat complex C 99.9 1.6E-24 3.5E-29 171.8 18.5 237 124-376 24-287 (299)
117 KOG0646 WD40 repeat protein [G 99.9 2.3E-24 5E-29 185.8 21.0 270 70-377 12-309 (476)
118 KOG0269 WD40 repeat-containing 99.9 4.4E-25 9.6E-30 201.2 17.2 231 124-374 101-339 (839)
119 KOG0305 Anaphase promoting com 99.9 2E-24 4.3E-29 194.1 21.3 227 125-377 189-421 (484)
120 KOG1274 WD40 repeat protein [G 99.9 2.2E-23 4.8E-28 193.7 28.6 263 48-360 12-284 (933)
121 KOG0283 WD40 repeat-containing 99.9 5E-24 1.1E-28 196.7 22.7 213 43-289 363-577 (712)
122 KOG0650 WD40 repeat nucleolar 99.9 7.4E-24 1.6E-28 187.9 22.7 299 41-373 392-733 (733)
123 KOG0294 WD40 repeat-containing 99.9 6.8E-23 1.5E-27 168.4 26.5 269 68-377 4-283 (362)
124 KOG0288 WD40 repeat protein Ti 99.9 2.7E-24 5.9E-29 182.6 17.5 224 13-328 230-458 (459)
125 KOG0639 Transducin-like enhanc 99.9 4.9E-24 1.1E-28 185.4 19.0 274 13-330 430-703 (705)
126 KOG0300 WD40 repeat-containing 99.9 1.1E-23 2.4E-28 173.2 20.1 277 16-333 162-478 (481)
127 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.5E-21 5.4E-26 173.5 33.1 268 66-378 2-282 (300)
128 KOG0647 mRNA export protein (c 99.9 3.9E-22 8.4E-27 163.1 24.3 261 15-319 41-311 (347)
129 KOG0641 WD40 repeat protein [G 99.9 6.4E-21 1.4E-25 149.8 29.9 262 44-331 84-349 (350)
130 KOG1036 Mitotic spindle checkp 99.9 9.2E-22 2E-26 161.5 23.7 256 15-320 26-293 (323)
131 KOG4378 Nuclear protein COP1 [ 99.9 2.6E-22 5.7E-27 174.5 21.1 296 15-358 5-305 (673)
132 KOG0321 WD40 repeat-containing 99.9 1.6E-21 3.5E-26 174.5 25.1 300 10-333 58-393 (720)
133 KOG0269 WD40 repeat-containing 99.9 3.1E-23 6.8E-28 189.2 14.3 237 15-290 101-342 (839)
134 KOG0321 WD40 repeat-containing 99.9 6.8E-22 1.5E-26 176.9 22.5 307 48-376 46-392 (720)
135 KOG4283 Transcription-coupled 99.9 9.7E-22 2.1E-26 160.2 20.8 221 159-384 40-285 (397)
136 KOG2055 WD40 repeat protein [G 99.9 1.5E-21 3.2E-26 168.3 22.4 285 7-331 216-512 (514)
137 KOG1063 RNA polymerase II elon 99.9 6.8E-21 1.5E-25 172.1 26.9 332 15-375 280-763 (764)
138 KOG1274 WD40 repeat protein [G 99.9 2.4E-21 5.1E-26 180.3 24.5 230 124-376 26-263 (933)
139 KOG2048 WD40 repeat protein [G 99.9 1.5E-20 3.4E-25 169.4 28.5 318 15-376 38-412 (691)
140 KOG2445 Nuclear pore complex c 99.9 1.4E-20 3E-25 154.4 25.6 276 46-344 10-334 (361)
141 KOG0973 Histone transcription 99.9 4.2E-22 9.1E-27 188.8 18.8 215 157-376 8-254 (942)
142 KOG1273 WD40 repeat protein [G 99.9 5.3E-21 1.2E-25 157.4 22.6 284 55-376 27-323 (405)
143 KOG2919 Guanine nucleotide-bin 99.9 4.3E-21 9.3E-26 158.5 21.2 293 61-369 57-363 (406)
144 KOG2048 WD40 repeat protein [G 99.9 3.7E-20 8.1E-25 167.0 28.8 284 48-374 24-318 (691)
145 KOG0307 Vesicle coat complex C 99.9 2.6E-22 5.6E-27 191.1 15.5 256 103-378 64-330 (1049)
146 KOG0650 WD40 repeat nucleolar 99.9 2.5E-21 5.4E-26 172.1 20.2 287 15-328 413-732 (733)
147 KOG4378 Nuclear protein COP1 [ 99.9 1.8E-21 4E-26 169.2 18.9 272 68-377 5-282 (673)
148 KOG0267 Microtubule severing p 99.9 5E-23 1.1E-27 186.5 8.7 200 160-375 26-226 (825)
149 KOG0270 WD40 repeat-containing 99.9 1.3E-20 2.7E-25 162.0 22.5 256 108-377 178-451 (463)
150 KOG0270 WD40 repeat-containing 99.9 7.6E-21 1.7E-25 163.3 20.7 245 64-338 191-456 (463)
151 KOG1273 WD40 repeat protein [G 99.9 3.7E-20 8E-25 152.5 23.7 274 15-331 36-322 (405)
152 KOG4328 WD40 protein [Function 99.9 1.2E-20 2.5E-25 162.7 21.6 292 48-375 185-495 (498)
153 KOG2096 WD40 repeat protein [G 99.9 4.1E-21 8.9E-26 158.3 17.9 210 160-379 84-312 (420)
154 KOG0302 Ribosome Assembly prot 99.9 7.8E-21 1.7E-25 160.0 19.7 234 125-369 167-433 (440)
155 KOG2445 Nuclear pore complex c 99.9 1E-19 2.2E-24 149.4 24.8 236 124-376 26-319 (361)
156 KOG4328 WD40 protein [Function 99.9 3.2E-20 7E-25 160.0 22.3 284 15-331 201-495 (498)
157 KOG0302 Ribosome Assembly prot 99.9 1.3E-20 2.8E-25 158.7 17.3 210 155-379 144-382 (440)
158 KOG1517 Guanine nucleotide bin 99.9 1.9E-19 4.2E-24 169.9 25.2 291 62-377 1073-1383(1387)
159 KOG1188 WD40 repeat protein [G 99.9 9.8E-20 2.1E-24 151.6 19.2 280 15-330 41-345 (376)
160 KOG1034 Transcriptional repres 99.8 2.8E-19 6.2E-24 148.1 20.1 301 47-375 36-383 (385)
161 KOG1445 Tumor-specific antigen 99.8 5E-19 1.1E-23 158.7 23.0 161 213-377 627-800 (1012)
162 KOG1007 WD repeat protein TSSC 99.8 5.1E-19 1.1E-23 144.1 20.8 233 134-376 94-362 (370)
163 KOG1188 WD40 repeat protein [G 99.8 5.1E-19 1.1E-23 147.4 21.3 282 66-376 41-347 (376)
164 KOG1034 Transcriptional repres 99.8 5.2E-19 1.1E-23 146.6 20.9 292 11-331 51-383 (385)
165 KOG0322 G-protein beta subunit 99.8 2.4E-19 5.3E-24 144.2 17.4 263 44-330 9-322 (323)
166 KOG1517 Guanine nucleotide bin 99.8 9.8E-19 2.1E-23 165.3 24.2 286 16-334 1078-1384(1387)
167 KOG0307 Vesicle coat complex C 99.8 6.8E-20 1.5E-24 174.8 16.0 239 67-334 82-330 (1049)
168 KOG0649 WD40 repeat protein [G 99.8 6.4E-18 1.4E-22 134.5 23.5 275 62-374 19-315 (325)
169 KOG0303 Actin-binding protein 99.8 2.2E-18 4.7E-23 146.3 19.3 204 160-377 79-296 (472)
170 KOG1538 Uncharacterized conser 99.8 6E-18 1.3E-22 152.7 20.9 273 53-376 14-294 (1081)
171 COG2319 FOG: WD40 repeat [Gene 99.8 1.7E-15 3.7E-20 142.4 38.3 315 15-378 78-403 (466)
172 KOG2919 Guanine nucleotide-bin 99.8 1.1E-17 2.3E-22 138.6 19.7 275 15-322 62-361 (406)
173 KOG1009 Chromatin assembly com 99.8 1.6E-17 3.4E-22 141.6 20.8 298 16-336 28-377 (434)
174 KOG0642 Cell-cycle nuclear pro 99.8 1.6E-18 3.4E-23 153.6 14.6 246 124-377 307-563 (577)
175 KOG0649 WD40 repeat protein [G 99.8 5.9E-17 1.3E-21 129.1 21.7 238 124-377 23-276 (325)
176 KOG2110 Uncharacterized conser 99.8 1.6E-15 3.6E-20 128.0 31.2 159 162-332 87-249 (391)
177 KOG1007 WD repeat protein TSSC 99.8 1.2E-17 2.6E-22 136.2 17.5 213 161-380 62-294 (370)
178 KOG1587 Cytoplasmic dynein int 99.8 1.8E-16 3.8E-21 147.3 25.5 285 24-332 222-517 (555)
179 COG2319 FOG: WD40 repeat [Gene 99.8 5.7E-15 1.2E-19 138.8 36.2 294 45-378 61-362 (466)
180 KOG0290 Conserved WD40 repeat- 99.8 1.3E-16 2.9E-21 130.3 21.1 289 54-372 47-362 (364)
181 PRK11028 6-phosphogluconolacto 99.8 3.4E-15 7.5E-20 135.3 32.7 280 17-331 5-304 (330)
182 PRK11028 6-phosphogluconolacto 99.8 2.2E-15 4.7E-20 136.6 31.4 276 69-376 6-305 (330)
183 KOG1587 Cytoplasmic dynein int 99.8 1.4E-16 2.9E-21 148.1 23.5 280 75-376 222-517 (555)
184 KOG1009 Chromatin assembly com 99.8 1.5E-16 3.3E-21 135.6 21.6 151 124-288 27-195 (434)
185 KOG1538 Uncharacterized conser 99.8 1.4E-16 3E-21 144.0 22.4 260 22-331 31-293 (1081)
186 KOG0322 G-protein beta subunit 99.8 2.6E-17 5.7E-22 132.5 15.8 237 124-374 26-322 (323)
187 KOG2110 Uncharacterized conser 99.8 1.4E-15 3.1E-20 128.4 26.4 195 164-378 48-251 (391)
188 KOG0642 Cell-cycle nuclear pro 99.8 1.5E-17 3.3E-22 147.4 15.3 297 17-338 245-568 (577)
189 KOG1334 WD40 repeat protein [G 99.8 2.3E-17 5E-22 143.7 15.1 304 42-376 135-467 (559)
190 KOG1963 WD40 repeat protein [G 99.8 7.6E-16 1.6E-20 143.7 26.0 329 15-377 28-377 (792)
191 KOG0303 Actin-binding protein 99.8 7.6E-17 1.7E-21 137.0 17.4 164 211-379 79-253 (472)
192 KOG0644 Uncharacterized conser 99.8 4.7E-18 1E-22 157.0 10.7 283 41-374 182-467 (1113)
193 KOG1524 WD40 repeat-containing 99.8 1.2E-16 2.7E-21 140.8 19.0 209 123-373 75-284 (737)
194 KOG1240 Protein kinase contain 99.7 8.2E-16 1.8E-20 148.0 25.5 271 29-377 1034-1336(1431)
195 KOG1272 WD40-repeat-containing 99.7 4.5E-18 9.7E-23 147.3 9.2 255 61-360 137-393 (545)
196 KOG1310 WD40 repeat protein [G 99.7 4.1E-16 9E-21 138.0 20.3 231 41-290 42-305 (758)
197 KOG0771 Prolactin regulatory e 99.7 9.7E-17 2.1E-21 137.7 15.9 163 159-331 183-354 (398)
198 KOG2394 WD40 protein DMR-N9 [G 99.7 1.9E-16 4.1E-21 139.7 17.7 174 172-355 183-383 (636)
199 KOG1445 Tumor-specific antigen 99.7 6.7E-17 1.5E-21 145.2 14.8 236 130-376 600-845 (1012)
200 KOG0771 Prolactin regulatory e 99.7 1E-16 2.2E-21 137.6 15.1 194 166-376 148-355 (398)
201 KOG0290 Conserved WD40 repeat- 99.7 1.8E-15 3.8E-20 123.8 21.1 248 48-321 95-356 (364)
202 KOG1240 Protein kinase contain 99.7 3.1E-15 6.7E-20 144.1 24.3 284 15-328 1062-1430(1431)
203 PRK01742 tolB translocation pr 99.7 1.8E-15 3.9E-20 141.4 22.5 235 23-357 183-426 (429)
204 KOG0974 WD-repeat protein WDR6 99.7 8.3E-16 1.8E-20 145.9 19.2 271 66-377 18-290 (967)
205 KOG4227 WD40 repeat protein [G 99.7 4.8E-15 1E-19 126.1 21.0 304 44-377 51-389 (609)
206 KOG2321 WD40 repeat protein [G 99.7 1E-14 2.2E-19 130.0 23.0 277 54-377 54-345 (703)
207 KOG1523 Actin-related protein 99.7 1.7E-15 3.6E-20 125.6 15.9 202 162-377 10-238 (361)
208 KOG1963 WD40 repeat protein [G 99.7 8.9E-14 1.9E-18 130.1 29.2 321 22-377 179-540 (792)
209 PF02239 Cytochrom_D1: Cytochr 99.7 1.6E-13 3.5E-18 124.2 30.2 281 15-379 7-351 (369)
210 KOG1524 WD40 repeat-containing 99.7 4.5E-15 9.6E-20 131.2 18.3 209 66-329 76-284 (737)
211 KOG2394 WD40 protein DMR-N9 [G 99.7 1.2E-14 2.5E-19 128.6 20.9 233 24-310 144-383 (636)
212 KOG1334 WD40 repeat protein [G 99.7 2E-15 4.3E-20 131.9 15.4 288 15-333 155-468 (559)
213 PF08662 eIF2A: Eukaryotic tra 99.7 5E-14 1.1E-18 115.9 21.0 116 214-339 60-186 (194)
214 PRK01742 tolB translocation pr 99.6 3E-14 6.5E-19 133.2 20.6 192 160-375 201-401 (429)
215 KOG1310 WD40 repeat protein [G 99.6 3.6E-15 7.9E-20 132.1 13.1 209 160-378 48-306 (758)
216 PF02239 Cytochrom_D1: Cytochr 99.6 5.7E-13 1.2E-17 120.7 25.5 294 16-340 50-356 (369)
217 KOG2139 WD40 repeat protein [G 99.6 8.7E-13 1.9E-17 111.5 23.9 252 55-337 102-389 (445)
218 KOG0644 Uncharacterized conser 99.6 5.3E-15 1.1E-19 137.2 11.7 268 15-334 203-471 (1113)
219 PF08662 eIF2A: Eukaryotic tra 99.6 6.8E-14 1.5E-18 115.1 17.1 148 218-376 10-180 (194)
220 PRK03629 tolB translocation pr 99.6 9.7E-13 2.1E-17 122.8 26.6 169 167-356 247-427 (429)
221 KOG2111 Uncharacterized conser 99.6 6.5E-13 1.4E-17 110.4 21.9 178 184-378 75-259 (346)
222 KOG4497 Uncharacterized conser 99.6 4.8E-13 1E-17 111.7 20.4 271 62-376 17-392 (447)
223 KOG1272 WD40-repeat-containing 99.6 2.8E-15 6.1E-20 130.2 7.6 219 124-373 142-360 (545)
224 KOG4227 WD40 repeat protein [G 99.6 2.7E-13 5.9E-18 115.6 19.4 258 101-378 54-325 (609)
225 KOG2111 Uncharacterized conser 99.6 5.4E-13 1.2E-17 110.9 20.6 159 162-332 94-257 (346)
226 KOG1523 Actin-related protein 99.6 1.9E-13 4E-18 113.6 17.6 244 104-376 11-279 (361)
227 KOG3881 Uncharacterized conser 99.6 4.3E-13 9.4E-18 114.4 18.3 207 67-312 117-342 (412)
228 KOG1354 Serine/threonine prote 99.6 2E-12 4.3E-17 108.7 21.0 264 15-290 38-361 (433)
229 KOG1354 Serine/threonine prote 99.5 9E-13 2E-17 110.7 17.7 267 54-333 28-361 (433)
230 KOG0974 WD-repeat protein WDR6 99.5 1.3E-12 2.9E-17 124.5 21.0 190 124-332 100-289 (967)
231 PRK04922 tolB translocation pr 99.5 5.8E-12 1.3E-16 118.1 24.5 169 167-356 252-432 (433)
232 PRK03629 tolB translocation pr 99.5 7E-12 1.5E-16 117.1 24.6 195 161-376 197-407 (429)
233 PRK02889 tolB translocation pr 99.5 7.4E-12 1.6E-16 117.0 24.7 171 166-357 243-425 (427)
234 KOG4497 Uncharacterized conser 99.5 5.8E-12 1.3E-16 105.3 21.0 303 13-369 18-426 (447)
235 PRK02889 tolB translocation pr 99.5 8.8E-12 1.9E-16 116.5 24.6 185 160-365 193-390 (427)
236 PRK05137 tolB translocation pr 99.5 2.5E-11 5.4E-16 114.0 27.3 170 165-356 248-432 (435)
237 PRK05137 tolB translocation pr 99.5 3.5E-11 7.7E-16 113.0 27.0 196 160-376 199-413 (435)
238 KOG2139 WD40 repeat protein [G 99.5 3.3E-12 7.1E-17 108.1 16.8 192 162-371 98-307 (445)
239 PRK04922 tolB translocation pr 99.5 1.7E-11 3.7E-16 115.0 23.5 194 161-375 202-411 (433)
240 TIGR03300 assembly_YfgL outer 99.5 1.9E-10 4.1E-15 106.4 29.5 306 14-372 65-376 (377)
241 KOG2315 Predicted translation 99.5 3.9E-10 8.5E-15 101.1 29.4 302 14-356 45-410 (566)
242 KOG2321 WD40 repeat protein [G 99.5 2.7E-11 5.8E-16 108.6 21.7 274 15-332 65-344 (703)
243 KOG4547 WD40 repeat-containing 99.5 9.7E-12 2.1E-16 111.9 18.8 192 172-376 3-221 (541)
244 PF10282 Lactonase: Lactonase, 99.4 7.2E-09 1.6E-13 94.2 36.9 282 24-338 13-331 (345)
245 KOG4547 WD40 repeat-containing 99.4 1E-11 2.3E-16 111.7 17.7 212 63-331 3-220 (541)
246 KOG0280 Uncharacterized conser 99.4 3.7E-11 8.1E-16 99.0 19.3 232 125-373 87-331 (339)
247 KOG1409 Uncharacterized conser 99.4 1E-10 2.2E-15 98.6 21.6 231 16-289 38-271 (404)
248 KOG1064 RAVE (regulator of V-A 99.4 2.5E-12 5.5E-17 128.7 12.3 184 124-340 2221-2407(2439)
249 TIGR02658 TTQ_MADH_Hv methylam 99.4 7.3E-09 1.6E-13 92.0 32.8 281 10-339 8-338 (352)
250 KOG2315 Predicted translation 99.4 1.1E-09 2.4E-14 98.3 26.9 197 162-377 165-392 (566)
251 TIGR02800 propeller_TolB tol-p 99.4 1.4E-10 3.1E-15 108.9 22.2 185 161-366 188-385 (417)
252 PF10282 Lactonase: Lactonase, 99.3 2.8E-08 6E-13 90.4 34.7 243 124-376 49-323 (345)
253 PRK00178 tolB translocation pr 99.3 5.3E-10 1.1E-14 105.3 24.0 193 161-374 197-405 (430)
254 TIGR02800 propeller_TolB tol-p 99.3 1.3E-09 2.9E-14 102.4 26.6 155 166-338 237-403 (417)
255 KOG4532 WD40-like repeat conta 99.3 1E-09 2.3E-14 89.5 21.8 234 67-334 86-334 (344)
256 KOG0280 Uncharacterized conser 99.3 1E-09 2.2E-14 90.7 21.3 277 23-332 45-334 (339)
257 KOG1064 RAVE (regulator of V-A 99.3 3.4E-11 7.5E-16 120.9 15.1 186 163-377 2209-2400(2439)
258 PRK00178 tolB translocation pr 99.3 2.9E-09 6.2E-14 100.3 26.6 169 167-356 247-427 (430)
259 PRK04792 tolB translocation pr 99.3 7.5E-10 1.6E-14 103.9 22.2 193 162-375 217-425 (448)
260 PRK04792 tolB translocation pr 99.3 2.6E-09 5.7E-14 100.3 25.5 169 167-356 266-446 (448)
261 PRK01029 tolB translocation pr 99.3 1.6E-08 3.5E-13 94.3 29.2 179 163-358 231-426 (428)
262 COG4946 Uncharacterized protei 99.3 1.7E-08 3.7E-13 89.0 27.1 144 159-317 356-504 (668)
263 KOG2041 WD40 repeat protein [G 99.3 8.2E-10 1.8E-14 101.8 19.8 287 2-327 12-333 (1189)
264 TIGR03300 assembly_YfgL outer 99.3 7.5E-09 1.6E-13 95.7 26.3 259 14-328 105-376 (377)
265 KOG2695 WD40 repeat protein [G 99.3 4.1E-11 8.8E-16 101.0 9.8 164 178-356 228-402 (425)
266 COG5354 Uncharacterized protei 99.2 1.7E-08 3.7E-13 89.8 26.2 308 15-377 44-397 (561)
267 KOG1409 Uncharacterized conser 99.2 8.8E-10 1.9E-14 93.0 16.9 255 39-332 14-271 (404)
268 TIGR02658 TTQ_MADH_Hv methylam 99.2 1.7E-07 3.7E-12 83.3 31.0 259 75-377 27-332 (352)
269 PRK01029 tolB translocation pr 99.2 4E-09 8.6E-14 98.3 21.7 197 163-376 185-404 (428)
270 KOG4532 WD40-like repeat conta 99.2 1.3E-08 2.9E-13 83.2 21.6 222 124-364 85-320 (344)
271 KOG1912 WD40 repeat protein [G 99.2 9.4E-09 2E-13 95.8 22.8 329 14-377 79-553 (1062)
272 PRK11138 outer membrane biogen 99.2 8.2E-08 1.8E-12 89.2 29.4 312 14-374 69-393 (394)
273 COG2706 3-carboxymuconate cycl 99.2 1.1E-06 2.4E-11 75.5 33.1 282 23-337 15-329 (346)
274 KOG2314 Translation initiation 99.2 2.3E-08 5E-13 89.9 23.7 272 62-376 258-574 (698)
275 PLN02919 haloacid dehalogenase 99.2 1.1E-07 2.3E-12 97.9 31.6 168 165-335 685-892 (1057)
276 COG5354 Uncharacterized protei 99.2 7.3E-08 1.6E-12 85.9 25.6 258 24-333 108-397 (561)
277 KOG2041 WD40 repeat protein [G 99.1 1.1E-08 2.3E-13 94.7 20.3 288 54-376 17-338 (1189)
278 KOG3914 WD repeat protein WDR4 99.1 7.7E-10 1.7E-14 95.4 12.0 160 166-340 66-232 (390)
279 PLN02919 haloacid dehalogenase 99.1 2.9E-07 6.4E-12 94.8 32.7 208 164-378 625-891 (1057)
280 PF15492 Nbas_N: Neuroblastoma 99.1 1.4E-07 3E-12 78.5 24.0 209 124-341 9-269 (282)
281 COG5170 CDC55 Serine/threonine 99.1 2.7E-09 5.8E-14 89.0 13.5 285 15-331 39-367 (460)
282 KOG0309 Conserved WD40 repeat- 99.1 1.5E-09 3.3E-14 100.4 13.0 281 62-376 33-340 (1081)
283 COG4946 Uncharacterized protei 99.1 3.2E-08 6.9E-13 87.4 19.9 167 173-360 331-502 (668)
284 COG5170 CDC55 Serine/threonine 99.1 8.5E-09 1.8E-13 86.1 14.5 293 53-376 28-368 (460)
285 PRK04043 tolB translocation pr 99.0 2.3E-07 5E-12 86.0 24.8 175 163-360 188-381 (419)
286 PF04762 IKI3: IKI3 family; I 99.0 2.5E-06 5.4E-11 86.5 33.9 290 51-376 75-457 (928)
287 PRK11138 outer membrane biogen 99.0 4E-07 8.6E-12 84.7 26.5 261 14-330 120-393 (394)
288 COG2706 3-carboxymuconate cycl 99.0 4.4E-07 9.6E-12 77.9 23.7 228 132-377 15-276 (346)
289 PF04762 IKI3: IKI3 family; I 99.0 1.2E-06 2.5E-11 88.7 29.8 251 102-373 74-377 (928)
290 KOG1912 WD40 repeat protein [G 99.0 9.2E-07 2E-11 83.0 26.5 246 15-288 26-304 (1062)
291 KOG4714 Nucleoporin [Nuclear s 99.0 2.1E-08 4.4E-13 81.8 13.1 75 214-289 180-255 (319)
292 PF15492 Nbas_N: Neuroblastoma 99.0 1.8E-06 3.9E-11 72.0 24.5 255 13-299 7-270 (282)
293 PF13360 PQQ_2: PQQ-like domai 99.0 1.7E-06 3.8E-11 74.5 26.1 224 74-338 2-237 (238)
294 KOG4190 Uncharacterized conser 98.9 2.3E-08 5E-13 89.9 13.7 271 15-327 748-1032(1034)
295 KOG4190 Uncharacterized conser 98.9 6.5E-09 1.4E-13 93.3 9.5 199 160-375 733-948 (1034)
296 KOG4714 Nucleoporin [Nuclear s 98.9 3.1E-08 6.7E-13 80.7 10.9 150 171-332 98-255 (319)
297 KOG3914 WD repeat protein WDR4 98.9 5.4E-08 1.2E-12 84.2 12.6 150 224-378 71-226 (390)
298 KOG0309 Conserved WD40 repeat- 98.8 5.9E-08 1.3E-12 90.2 12.6 243 58-332 74-340 (1081)
299 PF00400 WD40: WD domain, G-be 98.8 1.8E-08 3.9E-13 59.2 6.3 39 290-329 1-39 (39)
300 cd00216 PQQ_DH Dehydrogenases 98.8 1E-05 2.2E-10 77.2 28.4 301 15-360 62-451 (488)
301 PF13360 PQQ_2: PQQ-like domai 98.8 5.4E-06 1.2E-10 71.4 24.0 184 173-378 35-233 (238)
302 KOG2695 WD40 repeat protein [G 98.8 2.1E-08 4.5E-13 85.0 8.4 131 162-298 252-386 (425)
303 KOG0882 Cyclophilin-related pe 98.8 1.2E-07 2.5E-12 83.3 13.1 251 15-296 21-313 (558)
304 KOG1832 HIV-1 Vpr-binding prot 98.8 4.7E-09 1E-13 99.2 4.8 260 43-360 1095-1373(1516)
305 KOG1275 PAB-dependent poly(A) 98.8 2E-07 4.3E-12 88.8 15.0 186 173-376 146-343 (1118)
306 PF08450 SGL: SMP-30/Gluconola 98.8 3.5E-05 7.7E-10 66.7 27.4 212 64-319 11-243 (246)
307 PF08450 SGL: SMP-30/Gluconola 98.8 6.9E-05 1.5E-09 64.8 29.2 208 125-359 14-238 (246)
308 KOG0882 Cyclophilin-related pe 98.7 9.3E-08 2E-12 83.9 10.0 198 124-338 21-238 (558)
309 PF00400 WD40: WD domain, G-be 98.7 6.1E-08 1.3E-12 56.9 6.2 37 250-286 3-39 (39)
310 PF07433 DUF1513: Protein of u 98.7 1.7E-05 3.7E-10 68.4 22.0 203 164-377 6-249 (305)
311 KOG2314 Translation initiation 98.6 1.1E-05 2.5E-10 73.1 21.1 280 56-375 215-525 (698)
312 KOG2066 Vacuolar assembly/sort 98.6 1E-06 2.3E-11 83.1 15.2 183 163-374 40-232 (846)
313 KOG1275 PAB-dependent poly(A) 98.6 1.2E-06 2.5E-11 83.8 15.4 143 172-330 185-341 (1118)
314 PRK02888 nitrous-oxide reducta 98.6 2.6E-05 5.6E-10 73.6 23.9 94 236-332 295-405 (635)
315 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.6 0.00042 9E-09 66.6 31.8 187 167-360 238-517 (527)
316 KOG4649 PQQ (pyrrolo-quinoline 98.6 9.3E-05 2E-09 61.1 23.0 262 17-333 66-353 (354)
317 PF06433 Me-amine-dh_H: Methyl 98.5 0.00035 7.5E-09 61.2 26.6 276 24-344 17-333 (342)
318 PRK04043 tolB translocation pr 98.5 4.5E-05 9.7E-10 71.0 22.6 137 216-364 190-337 (419)
319 KOG2114 Vacuolar assembly/sort 98.5 4.9E-05 1.1E-09 72.8 21.8 211 62-299 32-255 (933)
320 KOG2066 Vacuolar assembly/sort 98.5 1.4E-05 3.1E-10 75.7 18.1 174 124-332 50-234 (846)
321 KOG1645 RING-finger-containing 98.5 2.8E-06 6E-11 73.9 12.4 85 160-255 191-276 (463)
322 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00041 9E-09 57.4 23.8 299 15-376 24-352 (354)
323 PF11768 DUF3312: Protein of u 98.5 0.00029 6.4E-09 65.1 25.6 73 213-290 259-331 (545)
324 KOG1920 IkappaB kinase complex 98.4 0.00023 4.9E-09 71.0 25.6 209 102-334 67-325 (1265)
325 PF07433 DUF1513: Protein of u 98.4 0.00021 4.4E-09 61.8 21.8 184 168-371 56-281 (305)
326 cd00216 PQQ_DH Dehydrogenases 98.4 0.00055 1.2E-08 65.5 27.2 282 67-379 63-428 (488)
327 KOG2114 Vacuolar assembly/sort 98.4 9.6E-05 2.1E-09 70.8 20.8 206 109-338 28-250 (933)
328 KOG1832 HIV-1 Vpr-binding prot 98.4 3.2E-07 6.9E-12 87.3 4.6 156 161-336 1100-1260(1516)
329 PF06977 SdiA-regulated: SdiA- 98.3 0.00027 5.9E-09 60.1 20.9 198 163-372 22-247 (248)
330 KOG1920 IkappaB kinase complex 98.3 5E-05 1.1E-09 75.4 18.2 199 163-376 69-323 (1265)
331 PF11768 DUF3312: Protein of u 98.3 4.2E-05 9.2E-10 70.4 15.5 73 257-332 258-330 (545)
332 PF08596 Lgl_C: Lethal giant l 98.2 0.00075 1.6E-08 61.9 23.1 212 153-368 78-328 (395)
333 PF06433 Me-amine-dh_H: Methyl 98.2 0.00073 1.6E-08 59.2 20.0 246 19-299 62-331 (342)
334 PRK02888 nitrous-oxide reducta 98.2 0.0031 6.7E-08 60.0 25.2 102 214-320 321-450 (635)
335 KOG3617 WD40 and TPR repeat-co 98.1 0.0006 1.3E-08 65.5 18.5 284 57-373 21-382 (1416)
336 KOG1897 Damage-specific DNA bi 98.1 0.016 3.5E-07 57.2 28.6 330 2-376 583-943 (1096)
337 PF08553 VID27: VID27 cytoplas 98.0 0.00023 5E-09 69.9 15.8 145 175-330 494-646 (794)
338 PF03178 CPSF_A: CPSF A subuni 97.9 0.0051 1.1E-07 55.5 21.7 183 174-372 42-262 (321)
339 KOG1008 Uncharacterized conser 97.9 3.7E-06 8E-11 77.5 1.3 188 124-331 71-275 (783)
340 PF04053 Coatomer_WDAD: Coatom 97.9 0.022 4.7E-07 53.3 25.6 217 54-331 35-262 (443)
341 KOG4640 Anaphase-promoting com 97.9 8.6E-05 1.9E-09 68.8 9.5 94 214-311 21-115 (665)
342 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0016 3.4E-08 47.0 13.7 90 66-187 16-109 (111)
343 KOG3621 WD40 repeat-containing 97.9 9.7E-05 2.1E-09 69.3 9.7 109 224-332 42-155 (726)
344 PF04053 Coatomer_WDAD: Coatom 97.9 0.0011 2.4E-08 61.7 16.5 140 164-332 34-174 (443)
345 COG0823 TolB Periplasmic compo 97.8 0.0014 3E-08 60.8 16.7 178 163-360 193-383 (425)
346 KOG1645 RING-finger-containing 97.8 0.0018 3.9E-08 57.0 16.0 245 47-331 191-461 (463)
347 COG3391 Uncharacterized conser 97.8 0.0097 2.1E-07 55.0 22.2 194 165-376 76-284 (381)
348 PF03178 CPSF_A: CPSF A subuni 97.8 0.0065 1.4E-07 54.8 19.9 179 185-377 3-204 (321)
349 KOG4640 Anaphase-promoting com 97.7 0.00019 4.2E-09 66.5 9.5 93 259-355 21-114 (665)
350 KOG3621 WD40 repeat-containing 97.7 0.00043 9.4E-09 65.1 11.4 117 163-289 34-155 (726)
351 COG3490 Uncharacterized protei 97.7 0.0074 1.6E-07 51.0 17.2 106 163-277 68-180 (366)
352 KOG1008 Uncharacterized conser 97.7 1.1E-05 2.3E-10 74.6 0.7 200 163-376 57-276 (783)
353 smart00320 WD40 WD40 repeats. 97.7 0.00015 3.3E-09 41.4 5.6 39 290-329 2-40 (40)
354 PF14655 RAB3GAP2_N: Rab3 GTPa 97.7 0.042 9.1E-07 50.6 27.8 83 259-341 308-408 (415)
355 KOG2444 WD40 repeat protein [G 97.7 7.5E-05 1.6E-09 60.6 5.0 106 225-331 68-177 (238)
356 PF06977 SdiA-regulated: SdiA- 97.7 0.029 6.3E-07 47.9 20.8 168 153-328 55-247 (248)
357 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.011 2.3E-07 42.8 15.2 102 216-326 2-109 (111)
358 KOG3617 WD40 and TPR repeat-co 97.6 0.0013 2.8E-08 63.4 12.6 109 166-288 19-131 (1416)
359 COG3391 Uncharacterized conser 97.6 0.063 1.4E-06 49.7 25.8 211 125-360 88-312 (381)
360 PF04841 Vps16_N: Vps16, N-ter 97.6 0.07 1.5E-06 49.8 24.1 166 163-341 81-256 (410)
361 PF04841 Vps16_N: Vps16, N-ter 97.5 0.08 1.7E-06 49.4 24.9 209 76-314 62-272 (410)
362 PF00780 CNH: CNH domain; Int 97.5 0.058 1.3E-06 47.5 26.4 232 64-340 6-264 (275)
363 PF05096 Glu_cyclase_2: Glutam 97.5 0.048 1E-06 46.4 21.8 191 154-360 36-244 (264)
364 smart00320 WD40 WD40 repeats. 97.5 0.00039 8.4E-09 39.6 5.4 37 250-286 4-40 (40)
365 PF08553 VID27: VID27 cytoplas 97.5 0.0022 4.8E-08 63.2 13.4 142 226-376 492-648 (794)
366 COG0823 TolB Periplasmic compo 97.5 0.0071 1.5E-07 56.2 16.1 143 216-368 195-349 (425)
367 KOG2079 Vacuolar assembly/sort 97.4 0.00066 1.4E-08 67.0 9.0 101 226-329 98-201 (1206)
368 PRK13616 lipoprotein LpqB; Pro 97.4 0.01 2.2E-07 57.7 17.0 149 215-374 351-524 (591)
369 KOG2395 Protein involved in va 97.4 0.0041 8.8E-08 57.0 12.7 143 173-330 344-499 (644)
370 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.4 0.15 3.4E-06 49.2 26.6 61 237-299 441-501 (527)
371 TIGR03074 PQQ_membr_DH membran 97.4 0.17 3.7E-06 50.8 24.9 247 65-340 194-486 (764)
372 PF08596 Lgl_C: Lethal giant l 97.4 0.0057 1.2E-07 56.2 13.7 114 215-331 3-173 (395)
373 KOG1898 Splicing factor 3b, su 97.3 0.22 4.8E-06 50.0 26.9 112 264-379 939-1052(1205)
374 COG3204 Uncharacterized protei 97.3 0.093 2E-06 44.9 18.6 169 163-342 86-273 (316)
375 KOG2444 WD40 repeat protein [G 97.2 0.00056 1.2E-08 55.6 4.5 142 230-377 33-179 (238)
376 TIGR03074 PQQ_membr_DH membran 97.1 0.37 8E-06 48.5 33.7 74 14-92 194-287 (764)
377 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0017 3.7E-08 39.1 5.1 35 301-336 11-45 (47)
378 KOG2395 Protein involved in va 97.1 0.031 6.7E-07 51.5 15.1 143 229-377 348-502 (644)
379 PRK13616 lipoprotein LpqB; Pro 97.1 0.075 1.6E-06 51.8 18.9 186 164-371 351-564 (591)
380 COG3386 Gluconolactonase [Carb 97.1 0.19 4.2E-06 44.6 21.6 188 153-356 58-264 (307)
381 PF14583 Pectate_lyase22: Olig 97.0 0.23 5E-06 44.9 26.5 92 124-231 49-140 (386)
382 PF00930 DPPIV_N: Dipeptidyl p 97.0 0.29 6.3E-06 44.8 27.1 149 164-319 185-345 (353)
383 KOG2079 Vacuolar assembly/sort 96.8 0.004 8.8E-08 61.8 7.9 100 269-368 98-198 (1206)
384 COG3490 Uncharacterized protei 96.8 0.1 2.2E-06 44.4 14.4 141 216-360 70-239 (366)
385 PF12234 Rav1p_C: RAVE protein 96.8 0.051 1.1E-06 52.5 14.4 116 260-376 31-157 (631)
386 PF02897 Peptidase_S9_N: Proly 96.7 0.52 1.1E-05 44.3 27.5 246 56-337 128-410 (414)
387 COG3386 Gluconolactonase [Carb 96.7 0.43 9.2E-06 42.4 21.7 143 164-320 112-274 (307)
388 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0067 1.5E-07 36.5 5.1 35 162-197 11-45 (47)
389 KOG1916 Nuclear protein, conta 96.6 0.0011 2.3E-08 64.4 1.8 167 163-336 133-328 (1283)
390 PF05694 SBP56: 56kDa selenium 96.6 0.6 1.3E-05 42.8 19.7 160 153-319 169-391 (461)
391 PF05694 SBP56: 56kDa selenium 96.5 0.69 1.5E-05 42.4 19.7 235 15-276 88-391 (461)
392 PF02897 Peptidase_S9_N: Proly 96.4 0.83 1.8E-05 43.0 24.3 197 166-375 127-357 (414)
393 KOG3630 Nuclear pore complex, 96.4 0.044 9.5E-07 55.2 11.5 155 162-319 100-261 (1405)
394 PF14727 PHTB1_N: PTHB1 N-term 96.4 0.83 1.8E-05 42.4 33.2 283 64-376 36-361 (418)
395 PF00930 DPPIV_N: Dipeptidyl p 96.4 0.013 2.7E-07 53.7 7.4 104 267-375 1-131 (353)
396 PHA02713 hypothetical protein; 96.2 0.19 4.1E-06 49.0 15.2 182 173-375 303-533 (557)
397 PF14870 PSII_BNR: Photosynthe 96.0 1 2.2E-05 39.9 20.0 151 214-372 145-301 (302)
398 PF15390 DUF4613: Domain of un 95.9 0.61 1.3E-05 44.2 15.8 120 163-288 57-186 (671)
399 PF10647 Gmad1: Lipoprotein Lp 95.9 1 2.2E-05 39.0 17.7 145 164-323 25-187 (253)
400 PF08728 CRT10: CRT10; InterP 95.8 1.1 2.3E-05 44.2 17.8 155 174-330 49-245 (717)
401 PHA02713 hypothetical protein; 95.7 0.26 5.7E-06 48.1 13.3 149 173-337 351-539 (557)
402 PF00780 CNH: CNH domain; Int 95.6 1.4 3E-05 38.7 28.7 256 9-299 2-266 (275)
403 PF14583 Pectate_lyase22: Olig 95.6 1.7 3.7E-05 39.5 18.8 177 169-360 42-251 (386)
404 PF10647 Gmad1: Lipoprotein Lp 95.5 1.5 3.2E-05 38.0 17.4 140 215-360 25-179 (253)
405 TIGR02604 Piru_Ver_Nterm putat 95.5 0.74 1.6E-05 42.4 15.0 140 214-361 14-198 (367)
406 PF12234 Rav1p_C: RAVE protein 95.4 1.5 3.2E-05 42.8 16.8 112 167-288 34-156 (631)
407 KOG4441 Proteins containing BT 95.3 2.6 5.7E-05 41.3 18.6 147 173-335 380-550 (571)
408 PF10168 Nup88: Nuclear pore c 95.3 0.46 1E-05 47.4 13.6 76 259-334 85-182 (717)
409 PHA03098 kelch-like protein; P 95.2 1.2 2.6E-05 43.5 16.5 183 173-376 294-512 (534)
410 KOG4499 Ca2+-binding protein R 95.0 1.8 3.8E-05 36.1 14.0 96 125-233 172-272 (310)
411 TIGR02604 Piru_Ver_Nterm putat 94.9 3.2 6.9E-05 38.3 17.3 143 163-320 14-202 (367)
412 PF10313 DUF2415: Uncharacteri 94.8 0.13 2.8E-06 30.0 5.0 31 259-289 1-34 (43)
413 PF15390 DUF4613: Domain of un 94.4 1.4 3.1E-05 41.8 13.3 148 214-374 20-185 (671)
414 COG4257 Vgb Streptogramin lyas 94.4 2.9 6.3E-05 35.8 17.3 210 150-376 49-263 (353)
415 COG3204 Uncharacterized protei 94.3 3.3 7.2E-05 35.9 18.3 175 54-246 88-264 (316)
416 PF14727 PHTB1_N: PTHB1 N-term 94.2 4.8 0.0001 37.5 27.8 26 167-192 179-204 (418)
417 PF07569 Hira: TUP1-like enhan 94.2 0.47 1E-05 39.9 9.2 70 266-336 18-100 (219)
418 PF08728 CRT10: CRT10; InterP 94.2 0.74 1.6E-05 45.3 11.5 125 163-287 101-245 (717)
419 PRK13684 Ycf48-like protein; P 94.1 4.4 9.4E-05 36.8 20.9 155 214-376 173-332 (334)
420 KOG3630 Nuclear pore complex, 94.1 0.79 1.7E-05 46.8 11.7 134 224-360 109-257 (1405)
421 KOG2280 Vacuolar assembly/sort 94.0 4.2 9.2E-05 39.9 15.8 40 163-202 217-256 (829)
422 TIGR03118 PEPCTERM_chp_1 conse 93.8 4.3 9.4E-05 35.5 20.8 206 165-376 25-280 (336)
423 PLN00033 photosystem II stabil 93.6 5.5 0.00012 37.0 15.8 143 224-372 247-396 (398)
424 KOG4441 Proteins containing BT 93.6 7.9 0.00017 38.0 20.0 106 173-291 427-549 (571)
425 PF07995 GSDH: Glucose / Sorbo 93.5 5.7 0.00012 36.0 23.9 76 250-326 245-330 (331)
426 PF10313 DUF2415: Uncharacteri 93.5 0.46 1E-05 27.7 5.5 31 302-332 1-34 (43)
427 PF02333 Phytase: Phytase; In 93.5 6 0.00013 36.2 24.8 210 15-248 69-293 (381)
428 KOG2377 Uncharacterized conser 93.3 2.5 5.4E-05 38.9 12.4 114 153-277 57-172 (657)
429 PRK10115 protease 2; Provision 93.2 11 0.00023 38.2 21.7 110 165-287 129-254 (686)
430 KOG1897 Damage-specific DNA bi 93.2 11 0.00024 38.4 29.1 329 10-379 495-860 (1096)
431 COG4590 ABC-type uncharacteriz 93.1 1.1 2.4E-05 41.0 9.9 162 163-335 221-390 (733)
432 TIGR03032 conserved hypothetic 93.1 5.8 0.00013 35.0 24.3 91 264-360 208-318 (335)
433 KOG4499 Ca2+-binding protein R 93.0 4.7 0.0001 33.7 20.3 93 216-311 160-263 (310)
434 PF07569 Hira: TUP1-like enhan 93.0 0.93 2E-05 38.2 9.1 65 225-290 20-97 (219)
435 PF14655 RAB3GAP2_N: Rab3 GTPa 93.0 1.5 3.3E-05 40.6 11.1 95 167-267 6-117 (415)
436 PF10395 Utp8: Utp8 family; I 93.0 10 0.00022 37.4 27.1 260 60-338 34-312 (670)
437 KOG4460 Nuclear pore complex, 92.9 1.3 2.8E-05 41.4 10.1 78 260-337 105-204 (741)
438 PF02333 Phytase: Phytase; In 92.7 7.9 0.00017 35.4 19.4 190 172-377 66-292 (381)
439 PF14870 PSII_BNR: Photosynthe 92.6 7.1 0.00015 34.7 22.3 115 254-370 140-256 (302)
440 PF13449 Phytase-like: Esteras 92.5 7.9 0.00017 35.0 15.8 160 214-376 20-250 (326)
441 PF03022 MRJP: Major royal jel 92.5 7.1 0.00015 34.5 17.4 170 185-360 35-249 (287)
442 PHA03098 kelch-like protein; P 92.3 3.5 7.5E-05 40.3 13.5 144 173-334 342-514 (534)
443 COG5167 VID27 Protein involved 92.3 3.7 8E-05 38.4 12.2 142 174-331 479-632 (776)
444 PHA02790 Kelch-like protein; P 92.0 12 0.00026 36.0 17.0 145 173-336 271-428 (480)
445 PF14781 BBS2_N: Ciliary BBSom 91.8 4.5 9.8E-05 30.6 13.2 110 224-338 7-132 (136)
446 PRK13684 Ycf48-like protein; P 91.8 9.9 0.00021 34.5 16.7 151 163-329 173-329 (334)
447 KOG2247 WD40 repeat-containing 91.6 0.024 5.1E-07 51.8 -2.2 140 168-324 40-181 (615)
448 TIGR02276 beta_rpt_yvtn 40-res 91.3 1.5 3.3E-05 25.3 6.2 40 268-309 1-41 (42)
449 COG1520 FOG: WD40-like repeat 91.3 12 0.00026 34.5 16.4 152 174-338 68-224 (370)
450 PF14781 BBS2_N: Ciliary BBSom 91.1 5.4 0.00012 30.2 13.7 110 124-246 11-126 (136)
451 KOG1900 Nuclear pore complex, 91.1 12 0.00026 39.5 15.5 164 71-246 95-273 (1311)
452 PF05096 Glu_cyclase_2: Glutam 91.1 9.4 0.0002 32.9 18.1 120 214-341 45-167 (264)
453 PF14761 HPS3_N: Hermansky-Pud 91.0 8 0.00017 32.0 14.4 140 175-330 29-213 (215)
454 PF07995 GSDH: Glucose / Sorbo 90.8 3.2 6.9E-05 37.6 10.7 106 260-368 3-136 (331)
455 PF11715 Nup160: Nucleoporin N 90.3 1.8 3.9E-05 42.5 9.2 71 226-296 157-256 (547)
456 PF11715 Nup160: Nucleoporin N 89.5 2.6 5.6E-05 41.4 9.6 37 303-339 216-256 (547)
457 PHA02790 Kelch-like protein; P 89.4 15 0.00032 35.4 14.4 141 173-334 318-473 (480)
458 TIGR03118 PEPCTERM_chp_1 conse 89.3 15 0.00032 32.4 20.0 55 165-222 246-306 (336)
459 COG5276 Uncharacterized conser 89.1 15 0.00032 32.1 25.9 268 12-332 9-286 (370)
460 COG3823 Glutamine cyclotransfe 88.9 12 0.00026 30.8 13.7 172 173-360 55-242 (262)
461 KOG2377 Uncharacterized conser 88.7 11 0.00023 35.0 11.8 102 210-316 63-168 (657)
462 TIGR03606 non_repeat_PQQ dehyd 88.7 19 0.00041 34.1 13.9 107 214-322 30-166 (454)
463 TIGR03606 non_repeat_PQQ dehyd 88.6 18 0.0004 34.2 13.8 55 259-313 30-90 (454)
464 COG1520 FOG: WD40-like repeat 88.6 20 0.00044 33.1 21.8 155 173-341 111-278 (370)
465 PF10168 Nup88: Nuclear pore c 88.5 30 0.00065 35.0 22.4 91 163-255 85-189 (717)
466 TIGR02276 beta_rpt_yvtn 40-res 88.4 2.7 5.9E-05 24.1 5.7 31 311-341 1-32 (42)
467 PF13449 Phytase-like: Esteras 88.4 19 0.00041 32.6 16.9 151 163-318 20-231 (326)
468 PLN00033 photosystem II stabil 88.3 22 0.00047 33.2 17.9 108 214-328 281-396 (398)
469 KOG4460 Nuclear pore complex, 87.8 21 0.00046 33.8 13.2 79 216-296 106-206 (741)
470 KOG1900 Nuclear pore complex, 87.3 28 0.00061 37.0 15.0 141 180-332 95-273 (1311)
471 KOG1916 Nuclear protein, conta 86.7 0.51 1.1E-05 46.8 2.6 73 5-83 185-265 (1283)
472 smart00564 PQQ beta-propeller 86.6 2.1 4.6E-05 23.1 4.2 27 174-200 6-32 (33)
473 COG3292 Predicted periplasmic 86.2 33 0.00071 33.0 18.3 100 258-360 375-477 (671)
474 PF03088 Str_synth: Strictosid 85.8 9.9 0.00021 26.6 8.1 42 276-319 33-74 (89)
475 KOG4659 Uncharacterized conser 85.8 54 0.0012 35.1 26.1 75 4-86 347-430 (1899)
476 COG4590 ABC-type uncharacteriz 85.8 4.9 0.00011 37.0 8.0 156 214-377 221-388 (733)
477 PF05935 Arylsulfotrans: Aryls 85.2 37 0.0008 32.7 16.5 141 182-339 126-309 (477)
478 COG3292 Predicted periplasmic 85.1 37 0.00081 32.7 18.9 110 216-332 378-492 (671)
479 KOG2247 WD40 repeat-containing 84.7 0.065 1.4E-06 49.1 -4.0 141 224-372 43-185 (615)
480 PF05935 Arylsulfotrans: Aryls 84.5 32 0.00069 33.1 13.6 132 235-374 126-300 (477)
481 PF11635 Med16: Mediator compl 84.4 53 0.0011 33.8 19.4 206 120-326 59-345 (753)
482 PF01011 PQQ: PQQ enzyme repea 84.3 2.5 5.3E-05 24.0 3.8 28 176-203 2-29 (38)
483 COG5167 VID27 Protein involved 83.7 40 0.00088 32.0 15.6 139 128-288 485-632 (776)
484 KOG2280 Vacuolar assembly/sort 83.5 51 0.0011 32.9 17.5 55 259-313 217-271 (829)
485 smart00564 PQQ beta-propeller 83.4 3.2 6.9E-05 22.4 3.9 25 272-296 8-32 (33)
486 COG4257 Vgb Streptogramin lyas 83.4 29 0.00063 30.0 18.0 211 151-376 92-306 (353)
487 KOG1983 Tomosyn and related SN 83.0 58 0.0013 34.6 15.4 75 254-335 194-268 (993)
488 PF14779 BBS1: Ciliary BBSome 82.6 31 0.00066 29.7 16.5 72 301-372 176-255 (257)
489 TIGR03548 mutarot_permut cycli 82.4 37 0.00081 30.6 17.9 107 226-335 72-198 (323)
490 KOG3616 Selective LIM binding 82.2 4.2 9.1E-05 39.9 6.4 67 259-329 15-81 (1636)
491 PF01011 PQQ: PQQ enzyme repea 81.0 4.5 9.8E-05 22.9 4.1 27 272-298 2-28 (38)
492 PF12657 TFIIIC_delta: Transcr 81.0 22 0.00048 28.6 9.6 31 259-289 86-122 (173)
493 PF10214 Rrn6: RNA polymerase 80.6 74 0.0016 32.9 22.7 169 153-332 70-277 (765)
494 PLN02193 nitrile-specifier pro 80.6 56 0.0012 31.4 19.0 106 226-336 228-356 (470)
495 PF12657 TFIIIC_delta: Transcr 80.6 14 0.00031 29.7 8.3 32 302-333 86-123 (173)
496 PLN02153 epithiospecifier prot 80.4 46 0.00099 30.3 20.2 105 226-336 85-230 (341)
497 PF12768 Rax2: Cortical protei 80.2 41 0.00089 29.6 12.5 113 184-310 16-145 (281)
498 PF10433 MMS1_N: Mono-function 79.9 61 0.0013 31.5 26.2 262 14-311 222-503 (504)
499 PF12341 DUF3639: Protein of u 79.7 5.9 0.00013 20.5 3.7 25 260-286 3-27 (27)
500 TIGR03548 mutarot_permut cycli 79.6 47 0.001 29.9 15.3 65 226-292 123-198 (323)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-49 Score=331.87 Aligned_cols=317 Identities=17% Similarity=0.247 Sum_probs=272.8
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
.+|+||+.|.++|+||+.+. ....+..+|..- +++++| +|||+.||+|+.||+|++||..+|+++..-
T Consensus 128 ~~l~tGsGD~TvR~WD~~Te-----Tp~~t~KgH~~W--Vlcvaw--sPDgk~iASG~~dg~I~lwdpktg~~~g~~--- 195 (480)
T KOG0271|consen 128 SRLVTGSGDTTVRLWDLDTE-----TPLFTCKGHKNW--VLCVAW--SPDGKKIASGSKDGSIRLWDPKTGQQIGRA--- 195 (480)
T ss_pred ceEEecCCCceEEeeccCCC-----CcceeecCCccE--EEEEEE--CCCcchhhccccCCeEEEecCCCCCccccc---
Confidence 68999999999999999996 567788899988 556666 889999999999999999999998866432
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
+.+|...|+++.|-+.+.. ....++++++.||.++||++.... .++. -..|...|+|+.|-. .
T Consensus 196 ----l~gH~K~It~Lawep~hl~---p~~r~las~skDg~vrIWd~~~~~--------~~~~-lsgHT~~VTCvrwGG-~ 258 (480)
T KOG0271|consen 196 ----LRGHKKWITALAWEPLHLV---PPCRRLASSSKDGSVRIWDTKLGT--------CVRT-LSGHTASVTCVRWGG-E 258 (480)
T ss_pred ----ccCcccceeEEeecccccC---CCccceecccCCCCEEEEEccCce--------EEEE-eccCccceEEEEEcC-C
Confidence 3456779999988766431 233588999999999999986432 2333 337889999999974 4
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee---------cCC-------------------
Q 014154 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS---------IDD------------------- 226 (430)
Q Consensus 175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~------------------- 226 (430)
.+|++|+.|++|++|+...|....++++|. .+|+.++... .|.
T Consensus 259 gliySgS~DrtIkvw~a~dG~~~r~lkGHa---------hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~ 329 (480)
T KOG0271|consen 259 GLIYSGSQDRTIKVWRALDGKLCRELKGHA---------HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE 329 (480)
T ss_pred ceEEecCCCceEEEEEccchhHHHhhcccc---------hheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence 699999999999999999999999998875 7777776630 122
Q ss_pred ------CCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC
Q 014154 227 ------HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC 300 (430)
Q Consensus 227 ------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 300 (430)
+..|++|+.|.++.+|+....++++..+.+|..-|..+.||||+++|++++.|..|++||.++|+.+..|++|
T Consensus 330 ~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH- 408 (480)
T KOG0271|consen 330 AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH- 408 (480)
T ss_pred HhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc-
Confidence 2459999999999999999878889999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecC
Q 014154 301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQN 373 (430)
Q Consensus 301 ~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~ 373 (430)
-+.|+.++|+.|.++|++|+.|.++++|++++.++... ++|| ...|+++.|+|||.. ++++.|..+++|.
T Consensus 409 v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~D--LpGh-~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 409 VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQD--LPGH-ADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeeccc--CCCC-CceEEEEEecCCCceeecCCCceEEEeec
Confidence 89999999999999999999999999999999998877 8899 555799999999999 8999999999995
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.3e-45 Score=308.28 Aligned_cols=281 Identities=16% Similarity=0.189 Sum_probs=249.7
Q ss_pred CCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecC-cccccccCceEE
Q 014154 49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQ-REESSSRSRTLL 127 (430)
Q Consensus 49 ~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~ 127 (430)
+.++ ....| +++++.||||+.+|.++||+..+...+.+|.+| ...+.++.|.+.. . ..++
T Consensus 175 ~rPi--s~~~f--S~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH--------~~~v~~~~fhP~~~~-------~~la 235 (459)
T KOG0272|consen 175 TRPI--SGCSF--SRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGH--------TSRVGAAVFHPVDSD-------LNLA 235 (459)
T ss_pred CCcc--eeeEe--ecCCCeEEEeecCCceeEeecCCcceeEEEecc--------ccceeeEEEccCCCc-------ccee
Confidence 4453 34444 667889999999999999999999888888875 3478888888874 3 5899
Q ss_pred EEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCC
Q 014154 128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS 207 (430)
Q Consensus 128 ~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 207 (430)
+|+.||++++|.+.... .+.-+. .|...|..++|+|+|++|++++.|.+-++||++++..+....+|.
T Consensus 236 t~s~Dgtvklw~~~~e~--------~l~~l~-gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs--- 303 (459)
T KOG0272|consen 236 TASADGTVKLWKLSQET--------PLQDLE-GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHS--- 303 (459)
T ss_pred eeccCCceeeeccCCCc--------chhhhh-cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccc---
Confidence 99999999999987543 333333 577899999999999999999999999999999998887777765
Q ss_pred CCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEc
Q 014154 208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (430)
Q Consensus 208 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 287 (430)
..|.+++| .+||.++++|+.|..-+|||++++++ +..+.+|..+|.+|+|+|+|..|++|+.|++++|||+
T Consensus 304 ------~~v~~iaf--~~DGSL~~tGGlD~~~RvWDlRtgr~-im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDL 374 (459)
T KOG0272|consen 304 ------KGVFSIAF--QPDGSLAATGGLDSLGRVWDLRTGRC-IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDL 374 (459)
T ss_pred ------cccceeEe--cCCCceeeccCccchhheeecccCcE-EEEecccccceeeEeECCCceEEeecCCCCcEEEeee
Confidence 67999999 89999999999999999999999885 8899999999999999999999999999999999999
Q ss_pred cCCeEEeeeeCCCCCCeEEEEecC-CCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCC
Q 014154 288 RTGKLLGCFIGKCSGSIRSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD 365 (430)
Q Consensus 288 ~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~ 365 (430)
+..+.++++.+| ..-|+.+.|+| .|.+|+|++.|++++||...+++++.. +.|| ...|.+++.++|+.+ ++++.
T Consensus 375 R~r~~ly~ipAH-~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ks--LaGH-e~kV~s~Dis~d~~~i~t~s~ 450 (459)
T KOG0272|consen 375 RMRSELYTIPAH-SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKS--LAGH-EGKVISLDISPDSQAIATSSF 450 (459)
T ss_pred cccccceecccc-cchhhheEecccCCeEEEEcccCcceeeecCCCcccchh--hcCC-ccceEEEEeccCCceEEEecc
Confidence 999999999999 99999999999 778999999999999999999999999 8899 566799999999999 99999
Q ss_pred CCceEecC
Q 014154 366 APMLEIQN 373 (430)
Q Consensus 366 d~~i~~~~ 373 (430)
|.++++|.
T Consensus 451 DRT~KLW~ 458 (459)
T KOG0272|consen 451 DRTIKLWR 458 (459)
T ss_pred Cceeeecc
Confidence 99999996
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-42 Score=287.51 Aligned_cols=293 Identities=11% Similarity=0.131 Sum_probs=250.8
Q ss_pred eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
.+...+.+|..+ +++..| +|+|.+|++|+.|.++++||+.+..++.+.++| ...+.++.|.+...
T Consensus 106 rCssS~~GH~e~--Vl~~~f--sp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH--------~~WVlcvawsPDgk--- 170 (480)
T KOG0271|consen 106 RCSSSIAGHGEA--VLSVQF--SPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGH--------KNWVLCVAWSPDGK--- 170 (480)
T ss_pred eeccccCCCCCc--EEEEEe--cCCCceEEecCCCceEEeeccCCCCcceeecCC--------ccEEEEEEECCCcc---
Confidence 444567789888 555666 778999999999999999999999999998875 45888888777654
Q ss_pred cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-----CCCEEEEEeCCCeEEEEECCCC
Q 014154 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-----SEKFSLFGGKGVEVNVWDLDKC 194 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~i~~~d~~~~ 194 (430)
.+++++.+|++.+|+...... ..+.+. .|...|++++|.| ..++|++++.||.|+|||+..+
T Consensus 171 -----~iASG~~dg~I~lwdpktg~~-------~g~~l~-gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~ 237 (480)
T KOG0271|consen 171 -----KIASGSKDGSIRLWDPKTGQQ-------IGRALR-GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG 237 (480)
T ss_pred -----hhhccccCCeEEEecCCCCCc-------cccccc-CcccceeEEeecccccCCCccceecccCCCCEEEEEccCc
Confidence 899999999999998654432 222332 6889999999976 5679999999999999999999
Q ss_pred eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEec-------
Q 014154 195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE------- 267 (430)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s------- 267 (430)
.++..+.+|. ..|+|+.| . ...+|++|+.|++|++|+...+. ..+.+++|...|+.++++
T Consensus 238 ~~~~~lsgHT---------~~VTCvrw--G-G~gliySgS~DrtIkvw~a~dG~-~~r~lkGHahwvN~lalsTdy~LRt 304 (480)
T KOG0271|consen 238 TCVRTLSGHT---------ASVTCVRW--G-GEGLIYSGSQDRTIKVWRALDGK-LCRELKGHAHWVNHLALSTDYVLRT 304 (480)
T ss_pred eEEEEeccCc---------cceEEEEE--c-CCceEEecCCCceEEEEEccchh-HHHhhcccchheeeeeccchhhhhc
Confidence 9999999986 78999999 3 34599999999999999999865 588999999999999877
Q ss_pred ----CCCC-------------------------EEEEEeCCCcEEEEEccCC-eEEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154 268 ----PDSF-------------------------NIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 268 ----p~~~-------------------------~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~ 317 (430)
|.++ .|++|+.|.++.+|+.... +++..+.+| ..-|+.+.||||++++|
T Consensus 305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH-q~lVn~V~fSPd~r~IA 383 (480)
T KOG0271|consen 305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH-QALVNHVSFSPDGRYIA 383 (480)
T ss_pred cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhch-hhheeeEEECCCccEEE
Confidence 2233 4999999999999997644 578899998 89999999999999999
Q ss_pred EEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154 318 SCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 318 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~ 377 (430)
+++.|..|++||.++|+.+.+ ++||... |+.++|+.|.++ ++++.|.++++|+....
T Consensus 384 SaSFDkSVkLW~g~tGk~las--fRGHv~~-VYqvawsaDsRLlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 384 SASFDKSVKLWDGRTGKFLAS--FRGHVAA-VYQVAWSADSRLLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred EeecccceeeeeCCCcchhhh--hhhccce-eEEEEeccCccEEEEcCCCceEEEEEeeee
Confidence 999999999999999999999 7899655 699999999999 99999999999998653
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2e-41 Score=286.64 Aligned_cols=271 Identities=15% Similarity=0.156 Sum_probs=241.9
Q ss_pred CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
...++||+-+|.++||+.... ..+.+|.+|...+..+.|.+.. ++.-||+++.||++++|++.+..++..+.+
T Consensus 187 s~~laT~swsG~~kvW~~~~~-----~~~~~l~gH~~~v~~~~fhP~~--~~~~lat~s~Dgtvklw~~~~e~~l~~l~g 259 (459)
T KOG0272|consen 187 SKHLATGSWSGLVKVWSVPQC-----NLLQTLRGHTSRVGAAVFHPVD--SDLNLATASADGTVKLWKLSQETPLQDLEG 259 (459)
T ss_pred CCeEEEeecCCceeEeecCCc-----ceeEEEeccccceeeEEEccCC--CccceeeeccCCceeeeccCCCcchhhhhc
Confidence 378999999999999999997 7889999999997766665532 255799999999999999998888888877
Q ss_pred cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC
Q 014154 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~ 173 (430)
| ...+..+.|.+... .+.+++.|.+-++|++.... .-+..-.|...|.+++|+|+
T Consensus 260 H--------~~RVs~VafHPsG~--------~L~TasfD~tWRlWD~~tk~---------ElL~QEGHs~~v~~iaf~~D 314 (459)
T KOG0272|consen 260 H--------LARVSRVAFHPSGK--------FLGTASFDSTWRLWDLETKS---------ELLLQEGHSKGVFSIAFQPD 314 (459)
T ss_pred c--------hhhheeeeecCCCc--------eeeecccccchhhcccccch---------hhHhhcccccccceeEecCC
Confidence 5 34777777766554 89999999999999987553 22334478899999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014154 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (430)
Q Consensus 174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 253 (430)
|.++++|+.|..-+|||+++++++..+.+|. ..|.+++| +|+|..|+||+.|++++|||++.. ..+.+
T Consensus 315 GSL~~tGGlD~~~RvWDlRtgr~im~L~gH~---------k~I~~V~f--sPNGy~lATgs~Dnt~kVWDLR~r-~~ly~ 382 (459)
T KOG0272|consen 315 GSLAATGGLDSLGRVWDLRTGRCIMFLAGHI---------KEILSVAF--SPNGYHLATGSSDNTCKVWDLRMR-SELYT 382 (459)
T ss_pred CceeeccCccchhheeecccCcEEEEecccc---------cceeeEeE--CCCceEEeecCCCCcEEEeeeccc-cccee
Confidence 9999999999999999999999999999876 77999999 999999999999999999999974 45899
Q ss_pred EeecCCCeEEEEecC-CCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEE
Q 014154 254 FDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD 329 (430)
Q Consensus 254 ~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd 329 (430)
+.+|..-|+.+.|+| .|.+|++++.|++++||..++.++++.+.|| .+.|.+++.+|++.++++++.|.++++|.
T Consensus 383 ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH-e~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 383 IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH-EGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC-ccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999999 6799999999999999999999999999999 99999999999999999999999999995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-38 Score=258.03 Aligned_cols=292 Identities=15% Similarity=0.144 Sum_probs=247.1
Q ss_pred eeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccc
Q 014154 41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (430)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 120 (430)
....+++|...|.. +-| .+|.++|++++.||.+.|||.-+....+.++.- ...++...+.+..
T Consensus 47 ~rr~LkGH~~Ki~~--~~w--s~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~--------s~WVMtCA~sPSg----- 109 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYA--MDW--STDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP--------SSWVMTCAYSPSG----- 109 (343)
T ss_pred eEEEecccccceee--eEe--cCCcCeEEeeccCCeEEEEEcccccceeEEecC--------ceeEEEEEECCCC-----
Confidence 34678999999554 444 667889999999999999998877666665541 1366655555443
Q ss_pred ccCceEEEEccCCeeEEEEeeecCccccCCCcceEEe--eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 014154 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW--NVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW 198 (430)
Q Consensus 121 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~ 198 (430)
..++.++.|+...||.+.+.. .++.+++- -..|.+.+.|+.|-+ ...|++++.|.+..+||+++++.+.
T Consensus 110 ---~~VAcGGLdN~Csiy~ls~~d-----~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~ 180 (343)
T KOG0286|consen 110 ---NFVACGGLDNKCSIYPLSTRD-----AEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQ 180 (343)
T ss_pred ---CeEEecCcCceeEEEeccccc-----ccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEE
Confidence 478888999999999987442 23333332 346788999999986 6788899999999999999999999
Q ss_pred eeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe
Q 014154 199 TAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (430)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 277 (430)
.+.+|. ..|.++.+ +| +++.+++|+.|+..++||++.+. .++.|.+|++.|+++.|.|+|.-+++|+
T Consensus 181 ~f~GH~---------gDV~slsl--~p~~~ntFvSg~cD~~aklWD~R~~~-c~qtF~ghesDINsv~ffP~G~afatGS 248 (343)
T KOG0286|consen 181 VFHGHT---------GDVMSLSL--SPSDGNTFVSGGCDKSAKLWDVRSGQ-CVQTFEGHESDINSVRFFPSGDAFATGS 248 (343)
T ss_pred EecCCc---------ccEEEEec--CCCCCCeEEecccccceeeeeccCcc-eeEeecccccccceEEEccCCCeeeecC
Confidence 999886 67999999 66 89999999999999999999976 5999999999999999999999999999
Q ss_pred CCCcEEEEEccCCeEEeeeeCC-CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154 278 GSGDLASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 278 ~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~ 356 (430)
.|++.++||+|..+.+..|... ...+|++++||..|++|++|..|.++.+||.-.++.+.. +.|| ...|.++..+|
T Consensus 249 DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~--L~GH-eNRvScl~~s~ 325 (343)
T KOG0286|consen 249 DDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGV--LAGH-ENRVSCLGVSP 325 (343)
T ss_pred CCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEE--eecc-CCeeEEEEECC
Confidence 9999999999999988888742 245899999999999999999999999999999998888 7789 66789999999
Q ss_pred cccc-cccCCCCceEecC
Q 014154 357 KEVA-NAAADAPMLEIQN 373 (430)
Q Consensus 357 ~g~~-~~~~~d~~i~~~~ 373 (430)
||.. ++++.|.+++||.
T Consensus 326 DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 326 DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCcEEEecchhHheeecC
Confidence 9999 9999999999994
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-38 Score=254.59 Aligned_cols=296 Identities=12% Similarity=0.174 Sum_probs=239.8
Q ss_pred eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC-----CcccceeeccCCCCCCCCCCceEEEEEeec
Q 014154 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-----GDLRVAISNAGDSGAQPEDDGIVGLHLFKR 114 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 114 (430)
.+..++.+|++.|..++.... +-+.|++++.|.++.+|++.. |.+++.+.+| ...+..+.+...
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~---~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GH--------sH~v~dv~~s~d 74 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIK---NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGH--------SHFVSDVVLSSD 74 (315)
T ss_pred eeeeeecCCCceEEEEEeecC---CCceEEEcccceEEEEEEeccCccccCceeeeeecc--------ceEecceEEccC
Confidence 456788999999888887774 236799999999999999853 4445555553 335555555544
Q ss_pred CcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 014154 115 QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC 194 (430)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 194 (430)
. .+.++++.|+.+++|++..+. +.+.|. .|...|.+++|+++...+++|+.|.+|.+|+....
T Consensus 75 g--------~~alS~swD~~lrlWDl~~g~--------~t~~f~-GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ 137 (315)
T KOG0279|consen 75 G--------NFALSASWDGTLRLWDLATGE--------STRRFV-GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV 137 (315)
T ss_pred C--------ceEEeccccceEEEEEecCCc--------EEEEEE-ecCCceEEEEecCCCceeecCCCcceeeeeeeccc
Confidence 3 489999999999999997653 455554 78899999999999999999999999999998654
Q ss_pred eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEE
Q 014154 195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY 274 (430)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~ 274 (430)
+..++..... .+||.|+.|.|+++..+|++++.|++|++||+++.+ ....+.+|++.++.+++||||.+++
T Consensus 138 -ck~t~~~~~~-------~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-l~~~~~gh~~~v~t~~vSpDGslca 208 (315)
T KOG0279|consen 138 -CKYTIHEDSH-------REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-LRTTFIGHSGYVNTVTVSPDGSLCA 208 (315)
T ss_pred -EEEEEecCCC-------cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-hhhccccccccEEEEEECCCCCEEe
Confidence 4444443321 289999999555557899999999999999999855 5788999999999999999999999
Q ss_pred EEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccc------cce
Q 014154 275 IGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHL------NEV 348 (430)
Q Consensus 275 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~~ 348 (430)
+|+.||.+.+||++.++.++.+.+ ...|.+++|+|+..+|+.+ .+..|+|||+.++..+..+.++... ...
T Consensus 209 sGgkdg~~~LwdL~~~k~lysl~a--~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~ 285 (315)
T KOG0279|consen 209 SGGKDGEAMLWDLNEGKNLYSLEA--FDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPI 285 (315)
T ss_pred cCCCCceEEEEEccCCceeEeccC--CCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcE
Confidence 999999999999999999888876 6899999999998776665 4556999999999988876544321 234
Q ss_pred EEeeeccccccc-cccCCCCceEecCCC
Q 014154 349 VFDSAFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 349 v~~~~~s~~g~~-~~~~~d~~i~~~~~~ 375 (430)
..+++|++||.. +++-.|+.|++|...
T Consensus 286 clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 286 CLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 678999999998 888899999999753
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.3e-37 Score=246.23 Aligned_cols=295 Identities=14% Similarity=0.152 Sum_probs=243.5
Q ss_pred CCCCCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc--
Q 014154 10 PGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL-- 87 (430)
Q Consensus 10 ~~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~-- 87 (430)
|..++..|++++.|.+||+|.+.+| .+..++...+..|..+.+ .|++++||+++. ..|++||+.++.+
T Consensus 6 ~~d~~viLvsA~YDhTIRfWqa~tG-----~C~rTiqh~dsqVNrLei----Tpdk~~LAaa~~-qhvRlyD~~S~np~P 75 (311)
T KOG0315|consen 6 PTDDPVILVSAGYDHTIRFWQALTG-----ICSRTIQHPDSQVNRLEI----TPDKKDLAAAGN-QHVRLYDLNSNNPNP 75 (311)
T ss_pred CCCCceEEEeccCcceeeeeehhcC-----eEEEEEecCccceeeEEE----cCCcchhhhccC-CeeEEEEccCCCCCc
Confidence 4447889999999999999999999 898888877777655544 667778888764 7899999987764
Q ss_pred cceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEE
Q 014154 88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF 167 (430)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~ 167 (430)
+.+|.+ +.+.++.+-|-... ..+.++++||+++||++.... .-+.|. +..+|.+
T Consensus 76 v~t~e~--------h~kNVtaVgF~~dg--------rWMyTgseDgt~kIWdlR~~~--------~qR~~~--~~spVn~ 129 (311)
T KOG0315|consen 76 VATFEG--------HTKNVTAVGFQCDG--------RWMYTGSEDGTVKIWDLRSLS--------CQRNYQ--HNSPVNT 129 (311)
T ss_pred eeEEec--------cCCceEEEEEeecC--------eEEEecCCCceEEEEeccCcc--------cchhcc--CCCCcce
Confidence 555555 34567766665544 488999999999999987421 334444 4589999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC
Q 014154 168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247 (430)
Q Consensus 168 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 247 (430)
+..+|+...|++|..+|.|++||+.+..+...+..... ..|.++.. .|+|.+++.+...|..++|++-+.
T Consensus 130 vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~--------~~i~sl~v--~~dgsml~a~nnkG~cyvW~l~~~ 199 (311)
T KOG0315|consen 130 VVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD--------TSIQSLTV--MPDGSMLAAANNKGNCYVWRLLNH 199 (311)
T ss_pred EEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC--------cceeeEEE--cCCCcEEEEecCCccEEEEEccCC
Confidence 99999999999999999999999988766655544321 56889999 899999999999999999998753
Q ss_pred C-----cceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC-eEEeeeeCCCCCCeEEEEecCCCCeEEEEeC
Q 014154 248 R-----RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGL 321 (430)
Q Consensus 248 ~-----~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~ 321 (430)
. .|+..++.|+.-+..+.+|||+++|++++.|.+++||+..+. +....+.+| ...+...+||.+|.||++|+.
T Consensus 200 ~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh-~rWvWdc~FS~dg~YlvTass 278 (311)
T KOG0315|consen 200 QTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH-QRWVWDCAFSADGEYLVTASS 278 (311)
T ss_pred CccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC-CceEEeeeeccCccEEEecCC
Confidence 2 467788999999999999999999999999999999999887 667778888 899999999999999999999
Q ss_pred CCcEEEEECCCCceeeEEEeeccccceEEeeec
Q 014154 322 DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAF 354 (430)
Q Consensus 322 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 354 (430)
|+.+++|++..++.+.. ..+|.... .+++.
T Consensus 279 d~~~rlW~~~~~k~v~q--y~gh~K~~-vc~~l 308 (311)
T KOG0315|consen 279 DHTARLWDLSAGKEVRQ--YQGHHKAA-VCVAL 308 (311)
T ss_pred CCceeecccccCceeee--cCCccccc-EEEEe
Confidence 99999999999999888 66776654 44443
No 8
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-38 Score=286.94 Aligned_cols=341 Identities=13% Similarity=0.124 Sum_probs=260.6
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc-cceeec
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL-RVAISN 93 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~-~~~~~~ 93 (430)
..|++|+.||.|+|||+..+ .+...|.+|.+.+..+.|.. ++.-.+|++|..|+++++||+.+... +..+..
T Consensus 118 ~LlAtggaD~~v~VWdi~~~-----~~th~fkG~gGvVssl~F~~--~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~ 190 (775)
T KOG0319|consen 118 TLLATGGADGRVKVWDIKNG-----YCTHSFKGHGGVVSSLLFHP--HWNRWLLASGATDGTVRVWNLNDKRTCLHTMIL 190 (775)
T ss_pred ceEEeccccceEEEEEeeCC-----EEEEEecCCCceEEEEEeCC--ccchhheeecCCCceEEEEEcccCchHHHHHHh
Confidence 67899999999999999998 89999999999976666655 55556788899999999999875443 222221
Q ss_pred c----CCCCCCC--------------------------------------------------------------------
Q 014154 94 A----GDSGAQP-------------------------------------------------------------------- 101 (430)
Q Consensus 94 ~----~~~~~~~-------------------------------------------------------------------- 101 (430)
| ..+.+.+
T Consensus 191 H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~ 270 (775)
T KOG0319|consen 191 HKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESG 270 (775)
T ss_pred hhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccc
Confidence 1 0011100
Q ss_pred ---------------------------------------------------CCCceEEEEEeecCcccccccCceEEEEc
Q 014154 102 ---------------------------------------------------EDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (430)
Q Consensus 102 ---------------------------------------------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 130 (430)
..+.|..++++..+. ..++.++
T Consensus 271 ~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~-------~~laVAT 343 (775)
T KOG0319|consen 271 KCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEE-------SHLAVAT 343 (775)
T ss_pred hhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCcc-------ceEEEEe
Confidence 111122233333322 4555566
Q ss_pred cCCeeEEEEeeecCc----------------------cccCCCcceEEeeec--------------CCCceEEEEEcCC-
Q 014154 131 TKGKASMRSIEVTKV----------------------SAESSCSTVKSWNVC--------------ASGTIAFSKVDIS- 173 (430)
Q Consensus 131 ~~g~~~v~~~~~~~~----------------------~~~~~~~~i~~~~~~--------------~~~~i~~~~~~~~- 173 (430)
..+.++++.+..... ++++.|..+++|.+. |...|.+++++..
T Consensus 344 Ns~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~ 423 (775)
T KOG0319|consen 344 NSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLG 423 (775)
T ss_pred CCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccC
Confidence 666666665432221 567788899999763 3456888888664
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014154 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (430)
Q Consensus 174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 253 (430)
..+|++++.|+++++|++...+................|...|+++++ +|+..+|+||+.|.+.+||++.... ...+
T Consensus 424 asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai--a~ndkLiAT~SqDktaKiW~le~~~-l~~v 500 (775)
T KOG0319|consen 424 ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI--APNDKLIATGSQDKTAKIWDLEQLR-LLGV 500 (775)
T ss_pred ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe--cCCCceEEecccccceeeecccCce-EEEE
Confidence 467889999999999998762221110000001112234567999999 8999999999999999999999644 6889
Q ss_pred EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCC
Q 014154 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 254 ~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~ 333 (430)
+.+|...|.|+.|+|..+.++++|.|.+|+||.+.+..++.+|.|| ...|..+.|-.++..|++++.||.|++|+++++
T Consensus 501 LsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH-~~aVlra~F~~~~~qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 501 LSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGH-TSAVLRASFIRNGKQLISAGADGLIKLWNIKTN 579 (775)
T ss_pred eeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCc-cceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred ceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 334 QLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
.++.+ +.+| ...||+++-++.+.+ ++|+.||.|.+|.-..
T Consensus 580 eC~~t--lD~H-~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 580 ECEMT--LDAH-NDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred hhhhh--hhhc-cceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 99999 7889 556799999999988 9999999999997665
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=9.5e-37 Score=265.11 Aligned_cols=337 Identities=16% Similarity=0.175 Sum_probs=265.4
Q ss_pred CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
.|+|++||++|++|.+|+-..- ++...++.|..-|.++.+ +|||.++|+.+.||+|.|||=.+|+.+..+.
T Consensus 159 RPfRi~T~sdDn~v~ffeGPPF-----KFk~s~r~HskFV~~VRy----sPDG~~Fat~gsDgki~iyDGktge~vg~l~ 229 (603)
T KOG0318|consen 159 RPFRIATGSDDNTVAFFEGPPF-----KFKSSFREHSKFVNCVRY----SPDGSRFATAGSDGKIYIYDGKTGEKVGELE 229 (603)
T ss_pred CceEEEeccCCCeEEEeeCCCe-----eeeecccccccceeeEEE----CCCCCeEEEecCCccEEEEcCCCccEEEEec
Confidence 3699999999999999986654 788889999998776666 6678899999999999999999999988887
Q ss_pred ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc------------------------ccc
Q 014154 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV------------------------SAE 148 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~------------------------~~~ 148 (430)
. ..+|.+.|.++.|.+... ++++++.|.+++||++..... .+.
T Consensus 230 ~-----~~aHkGsIfalsWsPDs~--------~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItV 296 (603)
T KOG0318|consen 230 D-----SDAHKGSIFALSWSPDST--------QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITV 296 (603)
T ss_pred C-----CCCccccEEEEEECCCCc--------eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEE
Confidence 4 346778999898887765 999999999999999876543 222
Q ss_pred CCCcceEEeee----------cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-----------EeeCCCC---
Q 014154 149 SSCSTVKSWNV----------CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI-----------WTAKPPP--- 204 (430)
Q Consensus 149 ~~~~~i~~~~~----------~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-----------~~~~~~~--- 204 (430)
+..|.+..++. .|...|+++..+|++.+|++|+.||.|.-|+..++..- ..+....
T Consensus 297 Sl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~ 376 (603)
T KOG0318|consen 297 SLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE 376 (603)
T ss_pred EcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCc
Confidence 33444444443 25678999999999999999999999999998754211 0000000
Q ss_pred ---------------------CC--------CCCC-----------------------------cCCcceeEEEEeecCC
Q 014154 205 ---------------------KN--------SLGI-----------------------------FTPTWFTSAAFLSIDD 226 (430)
Q Consensus 205 ---------------------~~--------~~~~-----------------------------~~~~~v~~~~~~~~~~ 226 (430)
.. +.++ ...-...++++ +|+
T Consensus 377 ~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv--~~~ 454 (603)
T KOG0318|consen 377 LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAV--SPD 454 (603)
T ss_pred EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEE--cCC
Confidence 00 0000 00012445566 889
Q ss_pred CCEEEEEeCCCcEEEEECCCCC-cceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeE
Q 014154 227 HRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR 305 (430)
Q Consensus 227 ~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 305 (430)
+..+++|+.|+.|+||.+.... .....+..|.++|++++||||+.+|+++...+.+.+||+.+.+.....-+.|.+.|.
T Consensus 455 ~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~ 534 (603)
T KOG0318|consen 455 GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKIN 534 (603)
T ss_pred CCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEE
Confidence 9999999999999999998754 234456679999999999999999999999999999999998875444453499999
Q ss_pred EEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCC
Q 014154 306 SIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 306 ~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~ 375 (430)
+++|+|+..++|+|+.|-.|.||+++.....-.+ ..+|... |+.+.|-.+..+++.+.|..|++|+..
T Consensus 535 ~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~i-knAH~~g-Vn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 535 CVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIII-KNAHLGG-VNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEeCCCceEEEeccccceEEEEEccChhhheEe-ccccccC-ceeEEEecCceEEeccCcceeEEeccc
Confidence 9999999999999999999999999865544222 4567555 899999999999999999999999864
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.7e-36 Score=239.86 Aligned_cols=274 Identities=14% Similarity=0.223 Sum_probs=227.9
Q ss_pred ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc
Q 014154 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~ 145 (430)
-+|++++.|.+|++|...+|.+..+++. .+..+..+.+.+.. ..+++.....+++|++....
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh--------~dsqVNrLeiTpdk---------~~LAaa~~qhvRlyD~~S~n- 72 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQH--------PDSQVNRLEITPDK---------KDLAAAGNQHVRLYDLNSNN- 72 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEec--------CccceeeEEEcCCc---------chhhhccCCeeEEEEccCCC-
Confidence 4789999999999999999999999875 23466667766543 44555556679999987543
Q ss_pred cccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
..++..|+ .|.+.|..+.|..+|+.+++|+.||+++|||++...+.+.++.. ++|+++.. +|
T Consensus 73 -----p~Pv~t~e-~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~----------spVn~vvl--hp 134 (311)
T KOG0315|consen 73 -----PNPVATFE-GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN----------SPVNTVVL--HP 134 (311)
T ss_pred -----CCceeEEe-ccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC----------CCcceEEe--cC
Confidence 34777777 67789999999999999999999999999999986555554432 77999999 78
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC------eEEeeeeCC
Q 014154 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG------KLLGCFIGK 299 (430)
Q Consensus 226 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~ 299 (430)
+...|++|..+|.|++||+.+.......+.....+|.++...|||.+|+.+...|..++|++-+. +++.+|+.|
T Consensus 135 nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah 214 (311)
T KOG0315|consen 135 NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH 214 (311)
T ss_pred CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc
Confidence 88999999999999999999865433444445578999999999999999999999999998754 356778888
Q ss_pred CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCCc
Q 014154 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 300 ~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~ 378 (430)
.+.+..+.+||++++|+++|.|.+++||++.+. ......+.+| ...+++++||.||.+ ++++.|+.+++|+.....
T Consensus 215 -~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh-~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 215 -NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGH-QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred -cceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecC-CceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 889999999999999999999999999999887 3344447788 678899999999999 999999999999987744
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-37 Score=256.92 Aligned_cols=291 Identities=17% Similarity=0.258 Sum_probs=248.5
Q ss_pred eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
.+.+.+.+|..++. ..-+ +|+-..+++++.|++|++||..++++...+++|. +.+..+.+-...
T Consensus 99 ~l~~~l~g~r~~vt--~v~~--hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt--------~sv~di~~~a~G---- 162 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVT--RVIF--HPSEALVVSASEDATIKVFDTETGELERSLRGHT--------DSVFDISFDASG---- 162 (406)
T ss_pred Cchhhhhcccccee--eeee--ccCceEEEEecCCceEEEEEccchhhhhhhhccc--------cceeEEEEecCc----
Confidence 45566667777644 3444 8888889999999999999999999988888753 356666665443
Q ss_pred cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 199 (430)
..+++++.|-.+.+|+...... .++.. ..|...|.+++|-|.+++|++++.|.+|+.|++.++.++.+
T Consensus 163 ----k~l~tcSsDl~~~LWd~~~~~~-------c~ks~-~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t 230 (406)
T KOG0295|consen 163 ----KYLATCSSDLSAKLWDFDTFFR-------CIKSL-IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKT 230 (406)
T ss_pred ----cEEEecCCccchhheeHHHHHH-------HHHHh-cCcccceeeEEEEecCCeeeecccccceeEEecccceeEEe
Confidence 3888888888888888754321 22222 35677899999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCC----------
Q 014154 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD---------- 269 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~---------- 269 (430)
+.+|. .||..++. +.||.++++++.|.+|++|-+.+.. ....+..|+.+|.|++|.|.
T Consensus 231 ~~~h~---------ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~-~k~~lR~hEh~vEci~wap~~~~~~i~~at 298 (406)
T KOG0295|consen 231 FPGHS---------EWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQ-CKAELREHEHPVECIAWAPESSYPSISEAT 298 (406)
T ss_pred ccCch---------HhEEEEEe--cCCeeEEEecCCCceEEEEEeccch-hhhhhhccccceEEEEecccccCcchhhcc
Confidence 99976 79999999 8999999999999999999999865 46788899999999999762
Q ss_pred -----CCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeecc
Q 014154 270 -----SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH 344 (430)
Q Consensus 270 -----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 344 (430)
++++.+++.|++|++||+.++.++.++.+| ...|..++|+|.|+||+++.+|+++++||++++++..+ +..|
T Consensus 299 ~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh-dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~--~~ah 375 (406)
T KOG0295|consen 299 GSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH-DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT--LEAH 375 (406)
T ss_pred CCCCCccEEEeecccceEEEEeccCCeEEEEEecc-cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec--cCCC
Confidence 369999999999999999999999999999 99999999999999999999999999999999999998 4456
Q ss_pred ccceEEeeeccccccc-cccCCCCceEecCC
Q 014154 345 LNEVVFDSAFADKEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 345 ~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~ 374 (430)
...+++++|+.+-.+ ++|+-|..+++|..
T Consensus 376 -~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 376 -EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred -cceeEEEecCCCCceEEeccccceeeeeec
Confidence 667899999999988 99999999999964
No 12
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4e-38 Score=265.53 Aligned_cols=282 Identities=15% Similarity=0.177 Sum_probs=242.3
Q ss_pred eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC
Q 014154 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 133 (430)
+-.+.| .|+|+.|++|+..|.+.+|+......... ...|+..+.++.|..... .++++..+|
T Consensus 99 V~~v~W--tPeGRRLltgs~SGEFtLWNg~~fnFEti--------lQaHDs~Vr~m~ws~~g~--------wmiSgD~gG 160 (464)
T KOG0284|consen 99 VNVVRW--TPEGRRLLTGSQSGEFTLWNGTSFNFETI--------LQAHDSPVRTMKWSHNGT--------WMISGDKGG 160 (464)
T ss_pred eeeEEE--cCCCceeEeecccccEEEecCceeeHHHH--------hhhhcccceeEEEccCCC--------EEEEcCCCc
Confidence 445556 89999999999999999998743322222 224667888888776654 899999999
Q ss_pred eeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCC
Q 014154 134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP 213 (430)
Q Consensus 134 ~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 213 (430)
.+++|....+ .+++....|...|++++|+|+...+++++.||+|+|||....+....+.+|.
T Consensus 161 ~iKyWqpnmn---------nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHg--------- 222 (464)
T KOG0284|consen 161 MIKYWQPNMN---------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHG--------- 222 (464)
T ss_pred eEEecccchh---------hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCC---------
Confidence 9999997755 5666776677899999999999999999999999999998888777777764
Q ss_pred cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEE
Q 014154 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL 293 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~ 293 (430)
-.|.+++| +|...+|++++.|..|++||.+++.+ +.++..|...|..+.|+|++++|++++.|..+++||+++.+.+
T Consensus 223 wdVksvdW--HP~kgLiasgskDnlVKlWDprSg~c-l~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 223 WDVKSVDW--HPTKGLIASGSKDNLVKLWDPRSGSC-LATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred CCcceecc--CCccceeEEccCCceeEeecCCCcch-hhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 56999999 78888999999999999999999775 8899999999999999999999999999999999999998999
Q ss_pred eeeeCCCCCCeEEEEecCC-CCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEe
Q 014154 294 GCFIGKCSGSIRSIARHPT-LPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEI 371 (430)
Q Consensus 294 ~~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~ 371 (430)
.++++| ...|+++.|+|- ..+|.+|+.||.|..|.+...+++..+ -.+| ...|++++|+|-|.+ ++|+.|.++++
T Consensus 300 ~~~r~H-kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i-~~AH-d~~iwsl~~hPlGhil~tgsnd~t~rf 376 (464)
T KOG0284|consen 300 FTYRGH-KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI-PPAH-DGEIWSLAYHPLGHILATGSNDRTVRF 376 (464)
T ss_pred HHhhcc-hhhheeeccccccccceeeccCCCceEEEeccccccccCC-Cccc-ccceeeeeccccceeEeecCCCcceee
Confidence 999999 899999999994 468899999999999999866776664 3456 566799999999999 99999999999
Q ss_pred cCCCCC
Q 014154 372 QNGNDT 377 (430)
Q Consensus 372 ~~~~~~ 377 (430)
|..+-.
T Consensus 377 w~r~rp 382 (464)
T KOG0284|consen 377 WTRNRP 382 (464)
T ss_pred eccCCC
Confidence 987653
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.4e-36 Score=241.02 Aligned_cols=273 Identities=17% Similarity=0.222 Sum_probs=229.4
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
-++++++.||.+.|||.-+. ...+.+...... +++..+ +|.|+++|+|+-|+...||++.+.+........
T Consensus 68 r~ivSaSqDGklIvWDs~Tt-----nK~haipl~s~W--VMtCA~--sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~ 138 (343)
T KOG0286|consen 68 RRIVSASQDGKLIVWDSFTT-----NKVHAIPLPSSW--VMTCAY--SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVS 138 (343)
T ss_pred CeEEeeccCCeEEEEEcccc-----cceeEEecCcee--EEEEEE--CCCCCeEEecCcCceeEEEecccccccccceee
Confidence 57899999999999998875 344444444444 777777 899999999999999999999754211111100
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-C
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-S 173 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~ 173 (430)
-.+.+|...+.+..+.+ + +.+++++.|.+..+|+++... .+..|. .|.+.|.+++++| +
T Consensus 139 --r~l~gHtgylScC~f~d-D--------~~ilT~SGD~TCalWDie~g~--------~~~~f~-GH~gDV~slsl~p~~ 198 (343)
T KOG0286|consen 139 --RELAGHTGYLSCCRFLD-D--------NHILTGSGDMTCALWDIETGQ--------QTQVFH-GHTGDVMSLSLSPSD 198 (343)
T ss_pred --eeecCccceeEEEEEcC-C--------CceEecCCCceEEEEEcccce--------EEEEec-CCcccEEEEecCCCC
Confidence 01234556777777776 2 599999999999999998654 566676 8899999999999 9
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014154 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (430)
Q Consensus 174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 253 (430)
++.+++|+-|+..++||++.+.+...+.+|. ..|+++.| .|+|.-|++|+.|++.++||++..++ +..
T Consensus 199 ~ntFvSg~cD~~aklWD~R~~~c~qtF~ghe---------sDINsv~f--fP~G~afatGSDD~tcRlyDlRaD~~-~a~ 266 (343)
T KOG0286|consen 199 GNTFVSGGCDKSAKLWDVRSGQCVQTFEGHE---------SDINSVRF--FPSGDAFATGSDDATCRLYDLRADQE-LAV 266 (343)
T ss_pred CCeEEecccccceeeeeccCcceeEeecccc---------cccceEEE--ccCCCeeeecCCCceeEEEeecCCcE-Eee
Confidence 9999999999999999999999999999987 77999999 79999999999999999999998654 555
Q ss_pred Eee--cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEE
Q 014154 254 FDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD 329 (430)
Q Consensus 254 ~~~--~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd 329 (430)
+.. -..+|++++||..|++|++|..|..+.+||.-.++.+..+.+| ..+|+++..+|||.-|++|+.|.+++||.
T Consensus 267 ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH-eNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 267 YSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH-ENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc-CCeeEEEEECCCCcEEEecchhHheeecC
Confidence 543 2358999999999999999999999999999999999999999 99999999999999999999999999994
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.3e-37 Score=280.71 Aligned_cols=207 Identities=19% Similarity=0.296 Sum_probs=194.8
Q ss_pred eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC
Q 014154 158 NVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH 237 (430)
Q Consensus 158 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 237 (430)
...|.++|....|+|+.++|++++.|+++++|.+.+..++..+++|. .+|..+.| +|.|.++||++.|+
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~---------~PVwdV~F--~P~GyYFatas~D~ 515 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHL---------APVWDVQF--APRGYYFATASHDQ 515 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCC---------cceeeEEe--cCCceEEEecCCCc
Confidence 45899999999999999999999999999999999999998888875 78999999 89999999999999
Q ss_pred cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154 238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 317 (430)
+-++|.... ..|.+.+.+|-+.|.|+.|+|+..|+++|+.|.+|++||..+|..++.|.|| .++|.+++|||+|++|+
T Consensus 516 tArLWs~d~-~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH-~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 516 TARLWSTDH-NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH-KGPVTALAFSPCGRYLA 593 (707)
T ss_pred eeeeeeccc-CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC-CCceEEEEEcCCCceEe
Confidence 999999998 4579999999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred EEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCCccc
Q 014154 318 SCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQED 380 (430)
Q Consensus 318 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~~~ 380 (430)
+|+.||.|.+||+.++.++.. +.+| .+.+.++.|+.||.+ ++++.|++|++||.......
T Consensus 594 Sg~ed~~I~iWDl~~~~~v~~--l~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 594 SGDEDGLIKIWDLANGSLVKQ--LKGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred ecccCCcEEEEEcCCCcchhh--hhcc-cCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 999999999999999999988 7788 777899999999999 99999999999998765443
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-35 Score=238.44 Aligned_cols=277 Identities=10% Similarity=0.101 Sum_probs=226.4
Q ss_pred CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
.+..+++++.|.++.+|++.......-..+..|.+|+..+.-+++ ++||++.++++.|+++++||+.+++....|.
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~----s~dg~~alS~swD~~lrlWDl~~g~~t~~f~ 102 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVL----SSDGNFALSASWDGTLRLWDLATGESTRRFV 102 (315)
T ss_pred CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEE----ccCCceEEeccccceEEEEEecCCcEEEEEE
Confidence 345689999999999999987544444567889999998776666 4578899999999999999999999888887
Q ss_pred ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC
Q 014154 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 172 (430)
+| ...+.++.+.+... ++++++.|.++.+|++...- ...+-+..+...|.|+.|+|
T Consensus 103 GH--------~~dVlsva~s~dn~--------qivSGSrDkTiklwnt~g~c--------k~t~~~~~~~~WVscvrfsP 158 (315)
T KOG0279|consen 103 GH--------TKDVLSVAFSTDNR--------QIVSGSRDKTIKLWNTLGVC--------KYTIHEDSHREWVSCVRFSP 158 (315)
T ss_pred ec--------CCceEEEEecCCCc--------eeecCCCcceeeeeeecccE--------EEEEecCCCcCcEEEEEEcC
Confidence 75 44777777766554 99999999999999975322 23333333367899999999
Q ss_pred C--CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc
Q 014154 173 S--EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (430)
Q Consensus 173 ~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 250 (430)
+ ..+|++++.|++|++||+++.+....+.+|. ..++.+++ +|||.+.++|+.||.+.+||++.++.
T Consensus 159 ~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~---------~~v~t~~v--SpDGslcasGgkdg~~~LwdL~~~k~- 226 (315)
T KOG0279|consen 159 NESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHS---------GYVNTVTV--SPDGSLCASGGKDGEAMLWDLNEGKN- 226 (315)
T ss_pred CCCCcEEEEccCCceEEEEccCCcchhhcccccc---------ccEEEEEE--CCCCCEEecCCCCceEEEEEccCCce-
Confidence 7 7899999999999999999988888777765 78999999 99999999999999999999998765
Q ss_pred eEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC--------CCCeEEEEecCCCCeEEEEeCC
Q 014154 251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC--------SGSIRSIARHPTLPIIASCGLD 322 (430)
Q Consensus 251 ~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------~~~v~~i~~~~~~~~l~s~~~d 322 (430)
+..+. |...|.+++|+|+.-.|+.+ .+..|+|||+.++.++..+.... .....+++|+++|..|++|-.|
T Consensus 227 lysl~-a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td 304 (315)
T KOG0279|consen 227 LYSLE-AFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTD 304 (315)
T ss_pred eEecc-CCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecC
Confidence 55554 67899999999998666655 45569999999998877665321 2245678999999999999999
Q ss_pred CcEEEEECC
Q 014154 323 SYLRFWDIK 331 (430)
Q Consensus 323 g~i~iwd~~ 331 (430)
+.|++|.+.
T Consensus 305 ~~irv~qv~ 313 (315)
T KOG0279|consen 305 NVIRVWQVA 313 (315)
T ss_pred CcEEEEEee
Confidence 999999875
No 16
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.4e-36 Score=250.81 Aligned_cols=293 Identities=14% Similarity=0.256 Sum_probs=251.2
Q ss_pred eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
++...+.+|.+.|.++++. |...++++|+.|++|+|||+.+|++..++.+| ...+..+.+.+...
T Consensus 142 Kl~rVi~gHlgWVr~vavd----P~n~wf~tgs~DrtikIwDlatg~LkltltGh--------i~~vr~vavS~rHp--- 206 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVD----PGNEWFATGSADRTIKIWDLATGQLKLTLTGH--------IETVRGVAVSKRHP--- 206 (460)
T ss_pred eehhhhhhccceEEEEeeC----CCceeEEecCCCceeEEEEcccCeEEEeecch--------hheeeeeeecccCc---
Confidence 4556677899998887774 45679999999999999999999998888764 23566677777665
Q ss_pred cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 199 (430)
++++++.|+.+..|++.... .|+-|. .|-..|.|++.+|.-..|++|+.|.++++||+++...+..
T Consensus 207 -----YlFs~gedk~VKCwDLe~nk--------vIR~Yh-GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~ 272 (460)
T KOG0285|consen 207 -----YLFSAGEDKQVKCWDLEYNK--------VIRHYH-GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHV 272 (460)
T ss_pred -----eEEEecCCCeeEEEechhhh--------hHHHhc-cccceeEEEeccccceeEEecCCcceEEEeeecccceEEE
Confidence 99999999999999998664 666665 7778999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC
Q 014154 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS 279 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 279 (430)
+.+|. ..|..+.+ .|-...+++|+.|++|++||++.++. ...+..|...+.+++.+|....+++++.|
T Consensus 273 l~GH~---------~~V~~V~~--~~~dpqvit~S~D~tvrlWDl~agkt-~~tlt~hkksvral~lhP~e~~fASas~d 340 (460)
T KOG0285|consen 273 LSGHT---------NPVASVMC--QPTDPQVITGSHDSTVRLWDLRAGKT-MITLTHHKKSVRALCLHPKENLFASASPD 340 (460)
T ss_pred ecCCC---------CcceeEEe--ecCCCceEEecCCceEEEeeeccCce-eEeeecccceeeEEecCCchhhhhccCCc
Confidence 99987 77888888 67778899999999999999999775 77888899999999999999999998877
Q ss_pred CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEE---Eeeccc--cceEEeeec
Q 014154 280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV---FLKQHL--NEVVFDSAF 354 (430)
Q Consensus 280 ~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~--~~~v~~~~~ 354 (430)
+ |+-|++..+..+..+.+| .+-|+++..+.|+ ++++|+++|.+.+||.++|-..+.. ...|.. ...|++.+|
T Consensus 341 n-ik~w~~p~g~f~~nlsgh-~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~f 417 (460)
T KOG0285|consen 341 N-IKQWKLPEGEFLQNLSGH-NAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCF 417 (460)
T ss_pred c-ceeccCCccchhhccccc-cceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEee
Confidence 6 999999999999999998 8999999998887 7889999999999999988665543 122222 344789999
Q ss_pred cccccc-cccCCCCceEecCCCC
Q 014154 355 ADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 355 s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
...|.. +++..|.+|++|..++
T Consensus 418 Dktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 418 DKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cccCceEEeccCCcceEEEeccc
Confidence 999987 9999999999998766
No 17
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=7.7e-36 Score=248.48 Aligned_cols=319 Identities=14% Similarity=0.101 Sum_probs=255.3
Q ss_pred ccCCCCCCC--cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCC
Q 014154 6 TLECPGCPP--LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL 83 (430)
Q Consensus 6 ~~~~~~~~~--~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~ 83 (430)
.+.+.+|.| -.++||+.|..-.||+..++ .....+.+|..+|.++.|++ +|.|||+|+.+|.|+||...
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~~~g-----e~~~eltgHKDSVt~~~Fsh----dgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDISTG-----EFAGELTGHKDSVTCCSFSH----DGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEccCC-----cceeEecCCCCceEEEEEcc----CceEEEecCCCccEEEEEcc
Confidence 334444543 56789999999999999998 68888999999988777766 67799999999999999999
Q ss_pred CCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCC
Q 014154 84 NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG 163 (430)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~ 163 (430)
++.....+.. ....+.=+.|.+.. ..+++++.||.+.+|.+... +..+++. .|+.
T Consensus 137 tg~~~~~~~~--------e~~dieWl~WHp~a--------~illAG~~DGsvWmw~ip~~--------~~~kv~~-Gh~~ 191 (399)
T KOG0296|consen 137 TGGEQWKLDQ--------EVEDIEWLKWHPRA--------HILLAGSTDGSVWMWQIPSQ--------ALCKVMS-GHNS 191 (399)
T ss_pred cCceEEEeec--------ccCceEEEEecccc--------cEEEeecCCCcEEEEECCCc--------ceeeEec-CCCC
Confidence 9887766642 01234334444422 48899999999999998642 3666776 6889
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEE
Q 014154 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (430)
++++=.|.|+|+.++++..||+|++||+.++.++..+..... ...+++.+ +..+..++.|+.++.+++-.
T Consensus 192 ~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~--------~~~~~~~~--~~~~~~~~~g~~e~~~~~~~ 261 (399)
T KOG0296|consen 192 PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG--------LELPCISL--NLAGSTLTKGNSEGVACGVN 261 (399)
T ss_pred CcccccccCCCceEEEEecCceEEEEecCCCceeEEeccccc--------CcCCcccc--ccccceeEeccCCccEEEEc
Confidence 999999999999999999999999999999999988775431 33566777 67888899999999988888
Q ss_pred CCCCCcceEEEe--------ecCCCeEEEEecC---CCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCC
Q 014154 244 TSAQRRPVMSFD--------FRETPIKAVAEEP---DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 244 ~~~~~~~~~~~~--------~~~~~i~~~~~sp---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~ 312 (430)
..+++. +.... .++..+.|+.+.| .-.+.++|+.||+|.|||+...++...+. | ..+|..+.|-+
T Consensus 262 ~~sgKV-v~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-h-e~~V~~l~w~~- 337 (399)
T KOG0296|consen 262 NGSGKV-VNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-H-EDGVTKLKWLN- 337 (399)
T ss_pred cccceE-EEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-C-CCceEEEEEcC-
Confidence 777653 33333 3444455555544 55788999999999999998877765554 4 77899999988
Q ss_pred CCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCC
Q 014154 313 LPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 313 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~ 375 (430)
..+|++++.||.|+.||.++|+++.+ +.|| ...|.+++++|++++ ++++.|++.+||+.+
T Consensus 338 t~~l~t~c~~g~v~~wDaRtG~l~~~--y~GH-~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 338 TDYLLTACANGKVRQWDARTGQLKFT--YTGH-QMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cchheeeccCceEEeeeccccceEEE--EecC-chheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 67999999999999999999999998 7799 555799999999999 999999999999864
No 18
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-35 Score=267.96 Aligned_cols=343 Identities=17% Similarity=0.212 Sum_probs=245.2
Q ss_pred CCCcceeeecCCCceEEEEccCCCCCcceeeeecCC-CCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccce
Q 014154 12 CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGD-PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA 90 (430)
Q Consensus 12 ~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~ 90 (430)
|...+|+++.....+++|++..+ +++..|.. |+.++.. +.+ +|.|.+|++|+.||.|+|||+..+.++..
T Consensus 72 ~d~~~L~~a~rs~llrv~~L~tg-----k~irswKa~He~Pvi~--ma~--~~~g~LlAtggaD~~v~VWdi~~~~~th~ 142 (775)
T KOG0319|consen 72 PDEEVLVTASRSQLLRVWSLPTG-----KLIRSWKAIHEAPVIT--MAF--DPTGTLLATGGADGRVKVWDIKNGYCTHS 142 (775)
T ss_pred CCccEEEEeeccceEEEEEcccc-----hHhHhHhhccCCCeEE--EEE--cCCCceEEeccccceEEEEEeeCCEEEEE
Confidence 44578999999999999999998 89999998 9999554 444 66778999999999999999999999999
Q ss_pred eeccCC----CCCCCCCCc--------eEEEEEeecCcccc-----------------cccCceEEEEccCCeeEEEEee
Q 014154 91 ISNAGD----SGAQPEDDG--------IVGLHLFKRQREES-----------------SSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 91 ~~~~~~----~~~~~~~~~--------i~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~~v~~~~ 141 (430)
|++|.. +.|.|+... -..+.+|+...... ...+..+++.+.|..+.||++.
T Consensus 143 fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~ 222 (775)
T KOG0319|consen 143 FKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLV 222 (775)
T ss_pred ecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehh
Confidence 988411 111111110 00122333221000 0112234444444444444432
Q ss_pred ecCc---------------------------cccCCCcceEEeeecCC--------------------------------
Q 014154 142 VTKV---------------------------SAESSCSTVKSWNVCAS-------------------------------- 162 (430)
Q Consensus 142 ~~~~---------------------------~~~~~~~~i~~~~~~~~-------------------------------- 162 (430)
.... .+.+.++.++.|+....
T Consensus 223 ~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtae 302 (775)
T KOG0319|consen 223 QYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAE 302 (775)
T ss_pred hhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEcc
Confidence 1111 11222333344432210
Q ss_pred ---------------------------------------------------------------CceEEEEEcCCCCEEEE
Q 014154 163 ---------------------------------------------------------------GTIAFSKVDISEKFSLF 179 (430)
Q Consensus 163 ---------------------------------------------------------------~~i~~~~~~~~~~~l~~ 179 (430)
..|.++....+|.+|++
T Consensus 303 Qnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat 382 (775)
T KOG0319|consen 303 QNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLAT 382 (775)
T ss_pred ceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEE
Confidence 11334443345567788
Q ss_pred EeCCCeEEEEECCCCee----eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC--c--ce
Q 014154 180 GGKGVEVNVWDLDKCEK----IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--R--PV 251 (430)
Q Consensus 180 ~~~d~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~--~~ 251 (430)
|+.|.++++|.++.+.. +....+ |...|.++++. .-...+|++++.|.++++|++...+ . +.
T Consensus 383 ~sKD~svilWr~~~~~~~~~~~a~~~g---------H~~svgava~~-~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~ 452 (775)
T KOG0319|consen 383 GSKDKSVILWRLNNNCSKSLCVAQANG---------HTNSVGAVAGS-KLGASFFVSVSQDCTLKLWDLPKSKETAFPIV 452 (775)
T ss_pred ecCCceEEEEEecCCcchhhhhhhhcc---------cccccceeeec-ccCccEEEEecCCceEEEecCCCcccccccce
Confidence 88888888887743222 222223 34778888883 3345699999999999999998621 1 11
Q ss_pred E----EEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEE
Q 014154 252 M----SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF 327 (430)
Q Consensus 252 ~----~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~i 327 (430)
. +...|...|+|++++|+.++|++|+.|.+.+||++...+.+.++.+| ...|.++.|+|..+.|+|+|.|++|+|
T Consensus 453 ~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH-~RGvw~V~Fs~~dq~laT~SgD~TvKI 531 (775)
T KOG0319|consen 453 LTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH-TRGVWCVSFSKNDQLLATCSGDKTVKI 531 (775)
T ss_pred ehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCC-ccceEEEEeccccceeEeccCCceEEE
Confidence 1 23468899999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred EECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154 328 WDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 328 wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~ 377 (430)
|.+.+..++.+ +.|| ...|..++|-.+|+. ++++.||-+++|+....
T Consensus 532 W~is~fSClkT--~eGH-~~aVlra~F~~~~~qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 532 WSISTFSCLKT--FEGH-TSAVLRASFIRNGKQLISAGADGLIKLWNIKTN 579 (775)
T ss_pred EEeccceeeee--ecCc-cceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence 99999999999 7899 555789999999988 99999999999998764
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.9e-35 Score=252.64 Aligned_cols=282 Identities=13% Similarity=0.220 Sum_probs=238.8
Q ss_pred CCCcccCCCC--CCCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEE
Q 014154 2 PRTTTLECPG--CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDI 79 (430)
Q Consensus 2 ~~~~~~~~~~--~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~i 79 (430)
|....++|.. +....|+||..||.++||+..+ .++.+|..|.++ ++++.| +..|+||++++.||++.+
T Consensus 233 ~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G------~l~~tl~~HkgP--I~slKW--nk~G~yilS~~vD~ttil 302 (524)
T KOG0273|consen 233 PSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDG------NLISTLGQHKGP--IFSLKW--NKKGTYILSGGVDGTTIL 302 (524)
T ss_pred CccCCcceEEecCCCCeEEEeecCcEEEEEecCc------hhhhhhhccCCc--eEEEEE--cCCCCEEEeccCCccEEE
Confidence 3445566664 3357899999999999999998 588899999999 677777 778999999999999999
Q ss_pred ecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeee
Q 014154 80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV 159 (430)
Q Consensus 80 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~ 159 (430)
||..+|.....+..+.. +-..+.|.+. ..+++++.++.+.|+.+. .+++++.+.
T Consensus 303 wd~~~g~~~q~f~~~s~--------~~lDVdW~~~---------~~F~ts~td~~i~V~kv~--------~~~P~~t~~- 356 (524)
T KOG0273|consen 303 WDAHTGTVKQQFEFHSA--------PALDVDWQSN---------DEFATSSTDGCIHVCKVG--------EDRPVKTFI- 356 (524)
T ss_pred EeccCceEEEeeeeccC--------CccceEEecC---------ceEeecCCCceEEEEEec--------CCCcceeee-
Confidence 99999988777765422 2233455443 479999999999999986 344777776
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee-------cCCCCEEEE
Q 014154 160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS-------IDDHRKFVA 232 (430)
Q Consensus 160 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~l~s 232 (430)
.|.++|.++.|+|.+.+|++++.|++++||+.........+..|. ..|..+.|.| +..+..+++
T Consensus 357 GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs---------kei~t~~wsp~g~v~~n~~~~~~l~s 427 (524)
T KOG0273|consen 357 GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHS---------KEIYTIKWSPTGPVTSNPNMNLMLAS 427 (524)
T ss_pred cccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhc---------cceeeEeecCCCCccCCCcCCceEEE
Confidence 489999999999999999999999999999998888877777776 4466666621 123457999
Q ss_pred EeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCC
Q 014154 233 GTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 233 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~ 312 (430)
++.|++|++||+..+. ++..|..|..+|++++|+|+|+++++|+.||.|.+|+.++++.++.+.+ .+.|..++|+.+
T Consensus 428 as~dstV~lwdv~~gv-~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~--~~~Ifel~Wn~~ 504 (524)
T KOG0273|consen 428 ASFDSTVKLWDVESGV-PIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG--TGGIFELCWNAA 504 (524)
T ss_pred eecCCeEEEEEccCCc-eeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC--CCeEEEEEEcCC
Confidence 9999999999999866 6899999999999999999999999999999999999999999999998 578999999999
Q ss_pred CCeEEEEeCCCcEEEEECC
Q 014154 313 LPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 313 ~~~l~s~~~dg~i~iwd~~ 331 (430)
|.+|..+-.|+.+++.|++
T Consensus 505 G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 505 GDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCEEEEEecCCCceEEEec
Confidence 9999999999999999875
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-34 Score=247.96 Aligned_cols=313 Identities=14% Similarity=0.139 Sum_probs=249.9
Q ss_pred ceeeecCCCceEEEEccCCC-CCc--ceeeeec--CCCC--CCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccc
Q 014154 16 RALTFDSLGLIKVIEARGEH-GGV--PKVVERW--GDPH--SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR 88 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~-~~~--~~~~~~~--~~~~--~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~ 88 (430)
.+++|+.|-+.++|++...- ... ..+.+.+ .++. ....+.++.| +.+|.+||+|+.||.++||+. +|.++
T Consensus 193 llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W--n~~G~~LatG~~~G~~riw~~-~G~l~ 269 (524)
T KOG0273|consen 193 LLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW--NNDGTLLATGSEDGEARIWNK-DGNLI 269 (524)
T ss_pred hhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe--cCCCCeEEEeecCcEEEEEec-Cchhh
Confidence 46788899999999987410 111 1111222 2221 1223455555 667889999999999999997 67767
Q ss_pred ceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEE
Q 014154 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (430)
Q Consensus 89 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~ 168 (430)
.++.. |..+|.+++|..... ++++++.|++..+|+.... .++.-..-|..+-..+
T Consensus 270 ~tl~~--------HkgPI~slKWnk~G~--------yilS~~vD~ttilwd~~~g---------~~~q~f~~~s~~~lDV 324 (524)
T KOG0273|consen 270 STLGQ--------HKGPIFSLKWNKKGT--------YILSGGVDGTTILWDAHTG---------TVKQQFEFHSAPALDV 324 (524)
T ss_pred hhhhc--------cCCceEEEEEcCCCC--------EEEeccCCccEEEEeccCc---------eEEEeeeeccCCccce
Confidence 66544 566999888766544 9999999999999997433 3333233344554667
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC
Q 014154 169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (430)
Q Consensus 169 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (430)
.|- +...+++++.|+.|+|+.+....++.++.+|. ..|.++.| +|.+.+|++++.|++++||......
T Consensus 325 dW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~---------g~V~alk~--n~tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 325 DWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHH---------GEVNALKW--NPTGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred EEe-cCceEeecCCCceEEEEEecCCCcceeeeccc---------CceEEEEE--CCCCceEEEecCCCeeEeeecCCCc
Confidence 776 45678899999999999999888888888876 77999999 8999999999999999999988755
Q ss_pred cceEEEeecCCCeEEEEecCCC---------CEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEE
Q 014154 249 RPVMSFDFRETPIKAVAEEPDS---------FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 249 ~~~~~~~~~~~~i~~~~~sp~~---------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~ 319 (430)
....+..|+..|..+.|+|+| ..+++++.|++|++||+..+.+++.|..| ..+|++++|+|+|+++|+|
T Consensus 393 -~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH-~~pVysvafS~~g~ylAsG 470 (524)
T KOG0273|consen 393 -SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH-QEPVYSVAFSPNGRYLASG 470 (524)
T ss_pred -chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC-CCceEEEEecCCCcEEEec
Confidence 478899999999999999964 57899999999999999999999999998 9999999999999999999
Q ss_pred eCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCC
Q 014154 320 GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 320 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~ 374 (430)
+.||.|.+|++++++.++.+ .+ ...|+.++|+.+|.. .....|+.+.+.+.
T Consensus 471 s~dg~V~iws~~~~~l~~s~--~~--~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 471 SLDGCVHIWSTKTGKLVKSY--QG--TGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred CCCCeeEeccccchheeEee--cC--CCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 99999999999999999984 33 345899999999988 66678888888764
No 21
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-33 Score=246.20 Aligned_cols=326 Identities=13% Similarity=0.134 Sum_probs=241.9
Q ss_pred CceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccc--ceeec----cCCC
Q 014154 24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR--VAISN----AGDS 97 (430)
Q Consensus 24 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~--~~~~~----~~~~ 97 (430)
..|.+-+++.. .....+.+|...+++..+ +|.|-|+|+|...|.|+|||......+ .+++. +..+
T Consensus 39 ksv~ir~i~~~-----~~~~iYtEH~~~vtVAky----SPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di 109 (603)
T KOG0318|consen 39 KSVIIRNIDNP-----ASVDIYTEHAHQVTVAKY----SPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDI 109 (603)
T ss_pred CEEEEEECCCc-----cceeeeccccceeEEEEe----CCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccc
Confidence 56777788876 667789999888665555 667889999999999999998653322 12222 2222
Q ss_pred CCCCCCCceE----------EEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc-----cccCCCcceEEeee---
Q 014154 98 GAQPEDDGIV----------GLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV-----SAESSCSTVKSWNV--- 159 (430)
Q Consensus 98 ~~~~~~~~i~----------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~-----~~~~~~~~i~~~~~--- 159 (430)
.+.+....|. .+..|+... -+--..+|.-+|.++.+.+. +++++|+.+.+|+-
T Consensus 110 ~Wd~ds~RI~avGEGrerfg~~F~~DSG~---------SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF 180 (603)
T KOG0318|consen 110 SWDFDSKRIAAVGEGRERFGHVFLWDSGN---------SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF 180 (603)
T ss_pred eeCCCCcEEEEEecCccceeEEEEecCCC---------ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe
Confidence 2332222222 111121111 01111233445556666554 78888888887752
Q ss_pred -------cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEE
Q 014154 160 -------CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA 232 (430)
Q Consensus 160 -------~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 232 (430)
.|..-|.|+.|+|+|.++++++.||.|.+||-.+++.+..+.... .|.+.|.+++| +||+..+++
T Consensus 181 KFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~------aHkGsIfalsW--sPDs~~~~T 252 (603)
T KOG0318|consen 181 KFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSD------AHKGSIFALSW--SPDSTQFLT 252 (603)
T ss_pred eeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCC------CccccEEEEEE--CCCCceEEE
Confidence 255679999999999999999999999999999999999988522 23478999999 999999999
Q ss_pred EeCCCcEEEEECCCCC------------------------------------------cceEEEeecCCCeEEEEecCCC
Q 014154 233 GTNDHQVRLYDTSAQR------------------------------------------RPVMSFDFRETPIKAVAEEPDS 270 (430)
Q Consensus 233 ~~~dg~i~iwd~~~~~------------------------------------------~~~~~~~~~~~~i~~~~~sp~~ 270 (430)
++.|.+++|||..+.. .+...+.+|...|+++..+|++
T Consensus 253 ~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~ 332 (603)
T KOG0318|consen 253 VSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG 332 (603)
T ss_pred ecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC
Confidence 9999999999987643 2345567899999999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCeEE-----------eeeeCC----------------------------------------
Q 014154 271 FNIYIGNGSGDLASVDIRTGKLL-----------GCFIGK---------------------------------------- 299 (430)
Q Consensus 271 ~~l~~~~~d~~i~iwd~~~~~~~-----------~~~~~~---------------------------------------- 299 (430)
.+|++|+.||.|.-||..++..- ..+..+
T Consensus 333 ~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~la 412 (603)
T KOG0318|consen 333 KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLA 412 (603)
T ss_pred CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEE
Confidence 99999999999999998654211 000000
Q ss_pred -------------------------------------------------------------------------CCCCeEE
Q 014154 300 -------------------------------------------------------------------------CSGSIRS 306 (430)
Q Consensus 300 -------------------------------------------------------------------------~~~~v~~ 306 (430)
|.++|++
T Consensus 413 v~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~ 492 (603)
T KOG0318|consen 413 VLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITD 492 (603)
T ss_pred EcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceE
Confidence 6788999
Q ss_pred EEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154 307 IARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 307 i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~ 377 (430)
+++|||+.+|++|...+.+.+||+.+++.... ...-| .+.|.+++|+|+..+ ++|+-|..|.||+....
T Consensus 493 vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~-~w~FH-takI~~~aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 493 VAYSPDGAYLAAGDASRKVVLYDVASREVKTN-RWAFH-TAKINCVAWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred EEECCCCcEEEEeccCCcEEEEEcccCceecc-eeeee-eeeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence 99999999999999999999999998877332 23335 566899999999999 99999999999998764
No 22
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.3e-37 Score=255.10 Aligned_cols=271 Identities=14% Similarity=0.206 Sum_probs=226.1
Q ss_pred CCCCCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccc
Q 014154 10 PGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV 89 (430)
Q Consensus 10 ~~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~ 89 (430)
.+...-++++|..|++|+|||...- .++..+.+|+++|-+ +.++. +.|++|+.|.+|+|||+++|+++.
T Consensus 203 lQYDD~kiVSGlrDnTikiWD~n~~-----~c~~~L~GHtGSVLC--Lqyd~----rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 203 LQYDDEKIVSGLRDNTIKIWDKNSL-----ECLKILTGHTGSVLC--LQYDE----RVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred EEecchhhhcccccCceEEeccccH-----HHHHhhhcCCCcEEe--eeccc----eEEEecCCCceEEEEeccCCchhh
Confidence 3444578999999999999999986 677889999999554 44433 489999999999999999999999
Q ss_pred eeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEE
Q 014154 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK 169 (430)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~ 169 (430)
++-+| .+.+..+.+.+ +.+++++.|+++.||++.... +-+++..-..|...|..+.
T Consensus 272 tlihH--------ceaVLhlrf~n----------g~mvtcSkDrsiaVWdm~sps------~it~rrVLvGHrAaVNvVd 327 (499)
T KOG0281|consen 272 TLIHH--------CEAVLHLRFSN----------GYMVTCSKDRSIAVWDMASPT------DITLRRVLVGHRAAVNVVD 327 (499)
T ss_pred HHhhh--------cceeEEEEEeC----------CEEEEecCCceeEEEeccCch------HHHHHHHHhhhhhheeeec
Confidence 88764 34777777655 699999999999999986443 2233333346788899998
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc
Q 014154 170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR 249 (430)
Q Consensus 170 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 249 (430)
|+ .+++++++.|.+|++|++.+++.++.+.+|+ ..|-|+.+ .++++++|+.|.+|++||+..+.
T Consensus 328 fd--~kyIVsASgDRTikvW~~st~efvRtl~gHk---------RGIAClQY----r~rlvVSGSSDntIRlwdi~~G~- 391 (499)
T KOG0281|consen 328 FD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHK---------RGIACLQY----RDRLVVSGSSDNTIRLWDIECGA- 391 (499)
T ss_pred cc--cceEEEecCCceEEEEeccceeeehhhhccc---------ccceehhc----cCeEEEecCCCceEEEEeccccH-
Confidence 85 5699999999999999999999999999987 55788888 78999999999999999999976
Q ss_pred ceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe---------EEeeeeCCCCCCeEEEEecCCCCeEEEEe
Q 014154 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK---------LLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 250 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~ 320 (430)
.++.+++|+.-|.|+.|. .+.|++|+.||+|++||+.++. ++..+..| .+.|..+.| |...+++++
T Consensus 392 cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h-sgRVFrLQF--D~fqIvsss 466 (499)
T KOG0281|consen 392 CLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH-SGRVFRLQF--DEFQIISSS 466 (499)
T ss_pred HHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhc-cceeEEEee--cceEEEecc
Confidence 489999999999999995 5699999999999999998653 34445566 889999999 777899999
Q ss_pred CCCcEEEEECCCCcee
Q 014154 321 LDSYLRFWDIKTRQLL 336 (430)
Q Consensus 321 ~dg~i~iwd~~~~~~~ 336 (430)
.|.+|.|||..++-.-
T Consensus 467 HddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 467 HDDTILIWDFLNGPPS 482 (499)
T ss_pred CCCeEEEEEcCCCCcc
Confidence 9999999999876544
No 23
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.4e-35 Score=243.33 Aligned_cols=271 Identities=13% Similarity=0.176 Sum_probs=232.8
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC-Ccccceeec
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISN 93 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~ 93 (430)
..++++++|++|++||..++ ++...+.+|... +..+++ +..|++||+++.|=.+++||..+ .+++..+.+
T Consensus 121 ~~v~~as~d~tikv~D~~tg-----~~e~~LrGHt~s--v~di~~--~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g 191 (406)
T KOG0295|consen 121 ALVVSASEDATIKVFDTETG-----ELERSLRGHTDS--VFDISF--DASGKYLATCSSDLSAKLWDFDTFFRCIKSLIG 191 (406)
T ss_pred eEEEEecCCceEEEEEccch-----hhhhhhhccccc--eeEEEE--ecCccEEEecCCccchhheeHHHHHHHHHHhcC
Confidence 34667888999999999998 788889999999 556666 55689999999999999999875 445555544
Q ss_pred cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC
Q 014154 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~ 173 (430)
+...+.++.+++... .+++++.|.++..|.+.... .++.+. .|...|..++.+.+
T Consensus 192 --------h~h~vS~V~f~P~gd--------~ilS~srD~tik~We~~tg~--------cv~t~~-~h~ewvr~v~v~~D 246 (406)
T KOG0295|consen 192 --------HEHGVSSVFFLPLGD--------HILSCSRDNTIKAWECDTGY--------CVKTFP-GHSEWVRMVRVNQD 246 (406)
T ss_pred --------cccceeeEEEEecCC--------eeeecccccceeEEecccce--------eEEecc-CchHhEEEEEecCC
Confidence 344778888888764 99999999999999987654 566665 67789999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee----------c---CCCCEEEEEeCCCcEE
Q 014154 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS----------I---DDHRKFVAGTNDHQVR 240 (430)
Q Consensus 174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------~---~~~~~l~s~~~dg~i~ 240 (430)
|.++++++.|.+|++|-+.++++...+..|+ ..|.+++|.+ . ..++++++++.|++|+
T Consensus 247 Gti~As~s~dqtl~vW~~~t~~~k~~lR~hE---------h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk 317 (406)
T KOG0295|consen 247 GTIIASCSNDQTLRVWVVATKQCKAELREHE---------HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIK 317 (406)
T ss_pred eeEEEecCCCceEEEEEeccchhhhhhhccc---------cceEEEEecccccCcchhhccCCCCCccEEEeecccceEE
Confidence 9999999999999999999987777777665 5577777742 0 1235899999999999
Q ss_pred EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe
Q 014154 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~ 320 (430)
+||+.++. ++.++.+|...|..++|+|.|+||+++..|+++++||++++++...+..| ..-|++++|+.+..++++|+
T Consensus 318 ~wdv~tg~-cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah-~hfvt~lDfh~~~p~VvTGs 395 (406)
T KOG0295|consen 318 IWDVSTGM-CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH-EHFVTSLDFHKTAPYVVTGS 395 (406)
T ss_pred EEeccCCe-EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC-cceeEEEecCCCCceEEecc
Confidence 99999987 48999999999999999999999999999999999999999999999988 89999999999999999999
Q ss_pred CCCcEEEEEC
Q 014154 321 LDSYLRFWDI 330 (430)
Q Consensus 321 ~dg~i~iwd~ 330 (430)
-|..+++|..
T Consensus 396 Vdqt~KvwEc 405 (406)
T KOG0295|consen 396 VDQTVKVWEC 405 (406)
T ss_pred ccceeeeeec
Confidence 9999999974
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-33 Score=253.85 Aligned_cols=332 Identities=14% Similarity=0.176 Sum_probs=247.8
Q ss_pred CCcceeeecCCCceEEEEccCCCC---CcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccc
Q 014154 13 PPLRALTFDSLGLIKVIEARGEHG---GVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV 89 (430)
Q Consensus 13 ~~~~l~t~~~dg~i~vw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~ 89 (430)
|+.++++.+..+.+.||...+... ....+..++.+|-..+. .+.| +.|.++|++|+.|.+++||.+...+-+.
T Consensus 106 Png~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~--si~W--s~DSr~l~~gsrD~s~rl~~v~~~k~~~ 181 (893)
T KOG0291|consen 106 PNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDIT--SIDW--SDDSRLLVTGSRDLSARLFGVDGNKNLF 181 (893)
T ss_pred CCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCcccee--EEEe--ccCCceEEeccccceEEEEEeccccccc
Confidence 567888888889999999876422 22334467778888854 4444 5566799999999999999987655432
Q ss_pred eeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCcccc--------C------CCcc--
Q 014154 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAE--------S------SCST-- 153 (430)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~--------~------~~~~-- 153 (430)
.. .+.+|.+.+++..+ ..+. ..+++.+.+|.+.+|.+...|.... + .++.
T Consensus 182 ~~------~l~gHkd~VvacfF-~~~~-------~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek 247 (893)
T KOG0291|consen 182 TY------ALNGHKDYVVACFF-GANS-------LDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEK 247 (893)
T ss_pred eE------eccCCCcceEEEEe-ccCc-------ceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhh
Confidence 22 24456678875444 3333 4789999999999999874332000 0 0000
Q ss_pred --------e-EEeeecCCCceEEEEEcC------------------------------------------CCCEEEEEeC
Q 014154 154 --------V-KSWNVCASGTIAFSKVDI------------------------------------------SEKFSLFGGK 182 (430)
Q Consensus 154 --------i-~~~~~~~~~~i~~~~~~~------------------------------------------~~~~l~~~~~ 182 (430)
. +.|--.....+++.+|++ .|++|+.|+.
T Consensus 248 ~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~ 327 (893)
T KOG0291|consen 248 THKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS 327 (893)
T ss_pred hcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC
Confidence 0 111111123344444444 4555554443
Q ss_pred C-CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCe
Q 014154 183 G-VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI 261 (430)
Q Consensus 183 d-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i 261 (430)
. |.+.||++.+..-+...++| ...++++++ +|||+++++|+.||.|+|||.+.+.+ ..+|..|++.|
T Consensus 328 klgQLlVweWqsEsYVlKQQgH---------~~~i~~l~Y--SpDgq~iaTG~eDgKVKvWn~~SgfC-~vTFteHts~V 395 (893)
T KOG0291|consen 328 KLGQLLVWEWQSESYVLKQQGH---------SDRITSLAY--SPDGQLIATGAEDGKVKVWNTQSGFC-FVTFTEHTSGV 395 (893)
T ss_pred ccceEEEEEeeccceeeecccc---------ccceeeEEE--CCCCcEEEeccCCCcEEEEeccCceE-EEEeccCCCce
Confidence 2 44555555444444444443 377999999 99999999999999999999999775 89999999999
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCC-cEEEEECCCCceeeEEE
Q 014154 262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS-YLRFWDIKTRQLLSAVF 340 (430)
Q Consensus 262 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~ 340 (430)
+.+.|+..++.+++.+-||+|+.||+..++..++|.........+++..|.|.++..|+.|. .|+||++++|+++..
T Consensus 396 t~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi-- 473 (893)
T KOG0291|consen 396 TAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI-- 473 (893)
T ss_pred EEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh--
Confidence 99999999999999999999999999999999999876455678899999999999998886 599999999999998
Q ss_pred eeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154 341 LKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 341 ~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~ 377 (430)
+.|| .+.|.+++|+|+|.. ++++.|.+|++|+.-..
T Consensus 474 LsGH-EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 474 LSGH-EGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred hcCC-CCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 8899 677899999999999 99999999999998764
No 25
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.6e-33 Score=280.74 Aligned_cols=313 Identities=13% Similarity=0.102 Sum_probs=238.4
Q ss_pred CCceEEEEccCCCCCcceeeee-----cCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCC
Q 014154 23 LGLIKVIEARGEHGGVPKVVER-----WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDS 97 (430)
Q Consensus 23 dg~i~vw~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 97 (430)
+|.+++|+.... .+... +..|... +.++.| +|+|++||+|+.|+.|+||+.......... .+.+.
T Consensus 457 ~gl~~~~~~~~~-----~~~~~~~~~~~~~~~~~--V~~i~f--s~dg~~latgg~D~~I~iwd~~~~~~~~~~-~~~~~ 526 (793)
T PLN00181 457 EGLCKYLSFSKL-----RVKADLKQGDLLNSSNL--VCAIGF--DRDGEFFATAGVNKKIKIFECESIIKDGRD-IHYPV 526 (793)
T ss_pred hhhhhhhcccce-----EEEEeeccccccCCCCc--EEEEEE--CCCCCEEEEEeCCCEEEEEECCcccccccc-cccce
Confidence 678999988874 22222 3336666 445555 678999999999999999997532100000 00000
Q ss_pred CCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-CCCE
Q 014154 98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKF 176 (430)
Q Consensus 98 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~ 176 (430)
....+...+..+.|.+... ..+++++.+|.+++|++.... .+..+. .|...|.+++|+| ++.+
T Consensus 527 ~~~~~~~~v~~l~~~~~~~-------~~las~~~Dg~v~lWd~~~~~--------~~~~~~-~H~~~V~~l~~~p~~~~~ 590 (793)
T PLN00181 527 VELASRSKLSGICWNSYIK-------SQVASSNFEGVVQVWDVARSQ--------LVTEMK-EHEKRVWSIDYSSADPTL 590 (793)
T ss_pred EEecccCceeeEEeccCCC-------CEEEEEeCCCeEEEEECCCCe--------EEEEec-CCCCCEEEEEEcCCCCCE
Confidence 0011223566665554433 589999999999999976332 344443 6788999999997 7899
Q ss_pred EEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee
Q 014154 177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF 256 (430)
Q Consensus 177 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 256 (430)
|++|+.|++|++||+.++..+..+..+ ..+.++.|. ++++.+|++|+.|+.|++||++....++..+.+
T Consensus 591 L~Sgs~Dg~v~iWd~~~~~~~~~~~~~----------~~v~~v~~~-~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~ 659 (793)
T PLN00181 591 LASGSDDGSVKLWSINQGVSIGTIKTK----------ANICCVQFP-SESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG 659 (793)
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEecC----------CCeEEEEEe-CCCCCEEEEEeCCCeEEEEECCCCCccceEecC
Confidence 999999999999999988887766543 458888885 567899999999999999999986656778889
Q ss_pred cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC------eEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154 257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 257 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~ 330 (430)
|...|.++.|. ++.+|++++.|+.|++||++.+ .++..+.+| ...+..+.|+|++.+|++|+.|+.|++|+.
T Consensus 660 h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh-~~~i~~v~~s~~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 660 HSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH-TNVKNFVGLSVSDGYIATGSETNEVFVYHK 737 (793)
T ss_pred CCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC-CCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence 99999999997 6789999999999999999743 567888898 889999999999999999999999999998
Q ss_pred CCCceeeEEEee----------ccccceEEeeeccccccc-cccCCCCceEecCC
Q 014154 331 KTRQLLSAVFLK----------QHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 331 ~~~~~~~~~~~~----------~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~ 374 (430)
.....+..+.+. .+....|.+++|+|++.. ++++.||.|++|+.
T Consensus 738 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 738 AFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 766554332211 112456899999999988 99999999999985
No 26
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4e-33 Score=252.33 Aligned_cols=326 Identities=13% Similarity=0.143 Sum_probs=263.6
Q ss_pred cccCCCCCCC--cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecC-CeEEEec
Q 014154 5 TTLECPGCPP--LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN-GLTDILN 81 (430)
Q Consensus 5 ~~~~~~~~~~--~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~d-g~i~iwd 81 (430)
..|+|..|.+ ..|++|-..|...++++..- .+++.+.-...+ +.++++ +..|++||.|+.. |.+-||+
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f-----~lih~LSis~~~--I~t~~~--N~tGDWiA~g~~klgQLlVwe 336 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDF-----NLIHSLSISDQK--ILTVSF--NSTGDWIAFGCSKLGQLLVWE 336 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCc-----eEEEEeecccce--eeEEEe--cccCCEEEEcCCccceEEEEE
Confidence 4566777776 45778889999999999986 677777765566 455555 4468899997654 8999999
Q ss_pred CCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC
Q 014154 82 PLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA 161 (430)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~ 161 (430)
+.....+...++| ...+.++.+.+.. ..+++|..||.++||+...+- .+..|. .|
T Consensus 337 WqsEsYVlKQQgH--------~~~i~~l~YSpDg--------q~iaTG~eDgKVKvWn~~Sgf--------C~vTFt-eH 391 (893)
T KOG0291|consen 337 WQSESYVLKQQGH--------SDRITSLAYSPDG--------QLIATGAEDGKVKVWNTQSGF--------CFVTFT-EH 391 (893)
T ss_pred eeccceeeecccc--------ccceeeEEECCCC--------cEEEeccCCCcEEEEeccCce--------EEEEec-cC
Confidence 9888777776654 3477877776554 489999999999999976432 444555 78
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC-cEE
Q 014154 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-QVR 240 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-~i~ 240 (430)
...|+.+.|+..++.+++.+.||+|+.||+...+..+++..+. +.+..|++. .|.|.++..|+.|. .|.
T Consensus 392 ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~--------p~Qfscvav--D~sGelV~AG~~d~F~If 461 (893)
T KOG0291|consen 392 TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE--------PIQFSCVAV--DPSGELVCAGAQDSFEIF 461 (893)
T ss_pred CCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCC--------ceeeeEEEE--cCCCCEEEeeccceEEEE
Confidence 8999999999999999999999999999999999988887764 245678888 88899999999887 599
Q ss_pred EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe-EEeeeeCCCCCCeEEEEecCCCCeEEEE
Q 014154 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~ 319 (430)
+|++++++ .+..+.+|+++|.+++|+|.+..|++++.|.+|++||+-... .+.++.. ...+..++|+|+|+.|+++
T Consensus 462 vWS~qTGq-llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i--~sdvl~vsfrPdG~elaVa 538 (893)
T KOG0291|consen 462 VWSVQTGQ-LLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI--RSDVLAVSFRPDGKELAVA 538 (893)
T ss_pred EEEeecCe-eeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee--ccceeEEEEcCCCCeEEEE
Confidence 99999977 588999999999999999999999999999999999986542 3444543 5689999999999999999
Q ss_pred eCCCcEEEEECCCCceeeEEEe-----------------eccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154 320 GLDSYLRFWDIKTRQLLSAVFL-----------------KQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 320 ~~dg~i~iwd~~~~~~~~~~~~-----------------~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~ 377 (430)
..||.|.+||.+.+..+..+.- ........+.++|++||.. ++|+..+.|.+|+.+..
T Consensus 539 TldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 539 TLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred EecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchh
Confidence 9999999999987655533210 0111244689999999999 99999999999998764
No 27
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.7e-32 Score=242.17 Aligned_cols=286 Identities=17% Similarity=0.283 Sum_probs=236.3
Q ss_pred eecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccccc
Q 014154 43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (430)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 122 (430)
..+.+|...+. ++.+ +|++++|++++.||.|.+|++.+++....+..+ ...+..+.+.+..
T Consensus 3 ~~~~~h~~~i~--~~~~--~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~------- 63 (289)
T cd00200 3 RTLKGHTGGVT--CVAF--SPDGKLLATGSGDGTIKVWDLETGELLRTLKGH--------TGPVRDVAASADG------- 63 (289)
T ss_pred hHhcccCCCEE--EEEE--cCCCCEEEEeecCcEEEEEEeeCCCcEEEEecC--------CcceeEEEECCCC-------
Confidence 35667888744 5555 677889999999999999999887765555442 2355556665543
Q ss_pred CceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCC
Q 014154 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (430)
Q Consensus 123 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 202 (430)
..+++++.++.+.+|++.... .+..+. .+...+.++.|++++.++++++.++.|.+||+.+++....+..
T Consensus 64 -~~l~~~~~~~~i~i~~~~~~~--------~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 133 (289)
T cd00200 64 -TYLASGSSDKTIRLWDLETGE--------CVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG 133 (289)
T ss_pred -CEEEEEcCCCeEEEEEcCccc--------ceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc
Confidence 388999999999999986432 344444 4566899999999988888888899999999998888777765
Q ss_pred CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcE
Q 014154 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL 282 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i 282 (430)
+. ..+.++.| +|++.++++++.++.|++||++.++ ++..+..|...+.++.|+|+++.+++++.++.|
T Consensus 134 ~~---------~~i~~~~~--~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 201 (289)
T cd00200 134 HT---------DWVNSVAF--SPDGTFVASSSQDGTIKLWDLRTGK-CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201 (289)
T ss_pred CC---------CcEEEEEE--cCcCCEEEEEcCCCcEEEEEccccc-cceeEecCccccceEEECCCcCEEEEecCCCcE
Confidence 43 67999999 7888888888889999999998755 477788888899999999999999999999999
Q ss_pred EEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-c
Q 014154 283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-N 361 (430)
Q Consensus 283 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~ 361 (430)
++||++.++.+..+..| ...+.++.|+|++.++++++.||.|++||+.+++.+..+ .+| ...+.+++|+|++.+ +
T Consensus 202 ~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~--~~~-~~~i~~~~~~~~~~~l~ 277 (289)
T cd00200 202 KLWDLSTGKCLGTLRGH-ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL--SGH-TNSVTSLAWSPDGKRLA 277 (289)
T ss_pred EEEECCCCceecchhhc-CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc--ccc-CCcEEEEEECCCCCEEE
Confidence 99999999998888777 789999999999888888888999999999998888774 456 455799999999887 8
Q ss_pred ccCCCCceEecC
Q 014154 362 AAADAPMLEIQN 373 (430)
Q Consensus 362 ~~~~d~~i~~~~ 373 (430)
+++.|+.+++|+
T Consensus 278 ~~~~d~~i~iw~ 289 (289)
T cd00200 278 SGSADGTIRIWD 289 (289)
T ss_pred EecCCCeEEecC
Confidence 899999999996
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.9e-34 Score=262.89 Aligned_cols=203 Identities=19% Similarity=0.293 Sum_probs=185.8
Q ss_pred CCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEE
Q 014154 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG 180 (430)
Q Consensus 101 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~ 180 (430)
+|.+++.+..+.+... .++++++|.++++|++.... .+-+|. .|..+|+++.|+|.|-++|++
T Consensus 449 GH~GPVyg~sFsPd~r--------fLlScSED~svRLWsl~t~s--------~~V~y~-GH~~PVwdV~F~P~GyYFata 511 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRR--------FLLSCSEDSSVRLWSLDTWS--------CLVIYK-GHLAPVWDVQFAPRGYYFATA 511 (707)
T ss_pred cCCCceeeeeeccccc--------ceeeccCCcceeeeecccce--------eEEEec-CCCcceeeEEecCCceEEEec
Confidence 4566888888777664 99999999999999987554 555666 889999999999999999999
Q ss_pred eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCC
Q 014154 181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP 260 (430)
Q Consensus 181 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 260 (430)
+.|++-++|......+++.+.+|. +.|.|+.| +|+..++++|+.|.+|++||..++.. ++.|.+|.++
T Consensus 512 s~D~tArLWs~d~~~PlRifaghl---------sDV~cv~F--HPNs~Y~aTGSsD~tVRlWDv~~G~~-VRiF~GH~~~ 579 (707)
T KOG0263|consen 512 SHDQTARLWSTDHNKPLRIFAGHL---------SDVDCVSF--HPNSNYVATGSSDRTVRLWDVSTGNS-VRIFTGHKGP 579 (707)
T ss_pred CCCceeeeeecccCCchhhhcccc---------cccceEEE--CCcccccccCCCCceEEEEEcCCCcE-EEEecCCCCc
Confidence 999999999999888888887765 77999999 89999999999999999999999875 9999999999
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCC
Q 014154 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 261 i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~ 333 (430)
|.+++|||+|++|++|+.||.|.+||+.+++++..+.+| .+.|+++.|+.+|..||+||.|++|++||+..-
T Consensus 580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 580 VTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred eEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc-cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999999999999999999999999999999 999999999999999999999999999998643
No 29
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.8e-33 Score=225.73 Aligned_cols=288 Identities=14% Similarity=0.200 Sum_probs=233.2
Q ss_pred eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCC-CCcccceeeccCCCCCCCCCCceEEEEEeecCccc
Q 014154 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE 118 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 118 (430)
..+..+.+|.+.|+ ...| +|+|.+||+|+.|..|.+|++. .-+-...++ .|.+.++.+.+.....
T Consensus 38 ap~m~l~gh~geI~--~~~F--~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s-- 103 (338)
T KOG0265|consen 38 APIMLLPGHKGEIY--TIKF--HPDGSCFASGGSDRAIVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGS-- 103 (338)
T ss_pred chhhhcCCCcceEE--EEEE--CCCCCeEeecCCcceEEEEeccccccceeeec--------cccceeEeeeeccCCC--
Confidence 34556778888855 4445 7889999999999999999963 222223333 3556888888877654
Q ss_pred ccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeee
Q 014154 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKI 197 (430)
Q Consensus 119 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~ 197 (430)
.+++++.|.++.+|+++... .++-+. .|...+..+.-.. ...++.+++.|+++++||+++...+
T Consensus 104 ------~i~S~gtDk~v~~wD~~tG~--------~~rk~k-~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~ 168 (338)
T KOG0265|consen 104 ------HILSCGTDKTVRGWDAETGK--------RIRKHK-GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI 168 (338)
T ss_pred ------EEEEecCCceEEEEecccce--------eeehhc-cccceeeecCccccCCeEEEecCCCceEEEEeecccchh
Confidence 99999999999999987654 444444 4566777776333 3456778999999999999988877
Q ss_pred EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe
Q 014154 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (430)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 277 (430)
..+... ..++++.| ...+..+++|+-|+.|++||++... ....+.+|..+|+.+..+|+|.++.+-+
T Consensus 169 ~t~~~k----------yqltAv~f--~d~s~qv~sggIdn~ikvWd~r~~d-~~~~lsGh~DtIt~lsls~~gs~llsns 235 (338)
T KOG0265|consen 169 KTFENK----------YQLTAVGF--KDTSDQVISGGIDNDIKVWDLRKND-GLYTLSGHADTITGLSLSRYGSFLLSNS 235 (338)
T ss_pred hccccc----------eeEEEEEe--cccccceeeccccCceeeeccccCc-ceEEeecccCceeeEEeccCCCcccccc
Confidence 776543 56899999 7888999999999999999999855 5899999999999999999999999999
Q ss_pred CCCcEEEEEccC----CeEEeeeeCCC---CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEE
Q 014154 278 GSGDLASVDIRT----GKLLGCFIGKC---SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVF 350 (430)
Q Consensus 278 ~d~~i~iwd~~~----~~~~~~~~~~~---~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 350 (430)
.|+++++||++- .+++..+.+|. +......+|+|++..+..|+.|..+++||..+...+.. ++|| ...|.
T Consensus 236 Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyk--lpGh-~gsvn 312 (338)
T KOG0265|consen 236 MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYK--LPGH-YGSVN 312 (338)
T ss_pred ccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEE--cCCc-ceeEE
Confidence 999999999984 35577787761 22456778999999999999999999999998888887 8899 55679
Q ss_pred eeeccccccc-cccCCCCceEec
Q 014154 351 DSAFADKEVA-NAAADAPMLEIQ 372 (430)
Q Consensus 351 ~~~~s~~g~~-~~~~~d~~i~~~ 372 (430)
+++|+|...+ ++++.|.+|.+=
T Consensus 313 ~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 313 EVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred EeeecCCCcEEEEeccCceeEee
Confidence 9999999999 999999998763
No 30
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.8e-35 Score=245.45 Aligned_cols=271 Identities=17% Similarity=0.205 Sum_probs=226.7
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
-||+||+..|...+|+...- .+-..+.+|+..|+. +.| +++|.++++|+.+|.|++|+.. ...+..++.+
T Consensus 109 RRLltgs~SGEFtLWNg~~f-----nFEtilQaHDs~Vr~--m~w--s~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ah 178 (464)
T KOG0284|consen 109 RRLLTGSQSGEFTLWNGTSF-----NFETILQAHDSPVRT--MKW--SHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAH 178 (464)
T ss_pred ceeEeecccccEEEecCcee-----eHHHHhhhhccccee--EEE--ccCCCEEEEcCCCceEEecccc-hhhhHHhhHh
Confidence 58999999999999998663 233346779999654 445 6678899999999999999974 3334444443
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
+...|.++.+.+.+ ..+++|+.||+++||+...... -++. ..|+-.|.+++|+|..
T Consensus 179 -------h~eaIRdlafSpnD--------skF~t~SdDg~ikiWdf~~~ke--------e~vL-~GHgwdVksvdWHP~k 234 (464)
T KOG0284|consen 179 -------HAEAIRDLAFSPND--------SKFLTCSDDGTIKIWDFRMPKE--------ERVL-RGHGWDVKSVDWHPTK 234 (464)
T ss_pred -------hhhhhheeccCCCC--------ceeEEecCCCeEEEEeccCCch--------hhee-ccCCCCcceeccCCcc
Confidence 22467777777644 4999999999999999765442 1222 3788899999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE
Q 014154 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 254 (430)
.+|++|+.|+.|++||.+++.++.++..|. ..|..+.| ++++++|++++.|..++++|+++.+ .+..+
T Consensus 235 gLiasgskDnlVKlWDprSg~cl~tlh~HK---------ntVl~~~f--~~n~N~Llt~skD~~~kv~DiR~mk-El~~~ 302 (464)
T KOG0284|consen 235 GLIASGSKDNLVKLWDPRSGSCLATLHGHK---------NTVLAVKF--NPNGNWLLTGSKDQSCKVFDIRTMK-ELFTY 302 (464)
T ss_pred ceeEEccCCceeEeecCCCcchhhhhhhcc---------ceEEEEEE--cCCCCeeEEccCCceEEEEehhHhH-HHHHh
Confidence 999999999999999999999999998876 77999999 8999999999999999999999755 48899
Q ss_pred eecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154 255 DFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 255 ~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
++|...++++.|+|-. .+|.+|+.||.|..|.+...+++..+...|...|++++|+|-|.+|++|+.|.++++|.-.
T Consensus 303 r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 303 RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 9999999999999954 6888999999999999986777767765559999999999999999999999999999753
No 31
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-33 Score=249.30 Aligned_cols=284 Identities=17% Similarity=0.217 Sum_probs=237.9
Q ss_pred ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccC
Q 014154 44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (430)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 123 (430)
.+..++..|.+ +.+ ||..++++++-.+|.|.|||.++..++..|... +-++.+..+....
T Consensus 8 k~~~rSdRVKs--Vd~--HPtePw~la~LynG~V~IWnyetqtmVksfeV~--------~~PvRa~kfiaRk-------- 67 (794)
T KOG0276|consen 8 KFQSRSDRVKS--VDF--HPTEPWILAALYNGDVQIWNYETQTMVKSFEVS--------EVPVRAAKFIARK-------- 67 (794)
T ss_pred HhhccCCceee--eec--CCCCceEEEeeecCeeEEEecccceeeeeeeec--------ccchhhheeeecc--------
Confidence 34445565443 333 889999999999999999999999988888752 2255555555554
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEeeCC
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKP 202 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~ 202 (430)
+.+++|+.|..++|++..... .++.|. .|...|.+++.+|...++++++.|-+|++||.+.. .+...+.+
T Consensus 68 nWiv~GsDD~~IrVfnynt~e--------kV~~Fe-AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG 138 (794)
T KOG0276|consen 68 NWIVTGSDDMQIRVFNYNTGE--------KVKTFE-AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG 138 (794)
T ss_pred ceEEEecCCceEEEEecccce--------eeEEee-ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC
Confidence 489999999999999987654 788887 78999999999999999999999999999999864 45667777
Q ss_pred CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCC--CEEEEEeCCC
Q 014154 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS--FNIYIGNGSG 280 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~--~~l~~~~~d~ 280 (430)
|. ..|++++|. +.|.+.+++++-|++|++|.+.... +..++++|+..|+|+.|-+.| .+|++|+.|.
T Consensus 139 H~---------HyVMqv~fn-PkD~ntFaS~sLDrTVKVWslgs~~-~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ 207 (794)
T KOG0276|consen 139 HE---------HYVMQVAFN-PKDPNTFASASLDRTVKVWSLGSPH-PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDL 207 (794)
T ss_pred cc---------eEEEEEEec-CCCccceeeeeccccEEEEEcCCCC-CceeeeccccCcceEEeccCCCcceEEecCCCc
Confidence 65 789999995 4577899999999999999999854 689999999999999997644 7999999999
Q ss_pred cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154 281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 281 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 360 (430)
+|+|||.++.+|++++.|| ...|..+.|+|.-+++++||+||++|||+..+.++..++.+ . -..+++++-.+.+..
T Consensus 208 tiKvWDyQtk~CV~TLeGH-t~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~--g-leRvW~I~~~k~~~~ 283 (794)
T KOG0276|consen 208 TIKVWDYQTKSCVQTLEGH-TNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY--G-LERVWCIAAHKGDGK 283 (794)
T ss_pred eEEEeecchHHHHHHhhcc-cccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc--C-CceEEEEeecCCCCe
Confidence 9999999999999999999 89999999999999999999999999999999888877433 2 345799998877666
Q ss_pred -cccCCCCceEe
Q 014154 361 -NAAADAPMLEI 371 (430)
Q Consensus 361 -~~~~~d~~i~~ 371 (430)
+.|.++|.+.+
T Consensus 284 i~vG~Deg~i~v 295 (794)
T KOG0276|consen 284 IAVGFDEGSVTV 295 (794)
T ss_pred EEEeccCCcEEE
Confidence 66666666544
No 32
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.3e-32 Score=255.28 Aligned_cols=287 Identities=18% Similarity=0.205 Sum_probs=239.6
Q ss_pred CCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc--ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceE
Q 014154 49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (430)
Q Consensus 49 ~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 126 (430)
...+.+ +.+ +|+|++|++++.++.+++|+...++ .+..+. .+...|..+.|.+... .+
T Consensus 159 ~~sv~~--~~f--s~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~--------~h~~~v~~~~fs~d~~--------~l 218 (456)
T KOG0266|consen 159 CPSVTC--VDF--SPDGRALAAASSDGLIRIWKLEGIKSNLLRELS--------GHTRGVSDVAFSPDGS--------YL 218 (456)
T ss_pred cCceEE--EEE--cCCCCeEEEccCCCcEEEeecccccchhhcccc--------ccccceeeeEECCCCc--------EE
Confidence 444333 444 7889999999999999999997666 444443 3445777788776654 99
Q ss_pred EEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCC
Q 014154 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (430)
Q Consensus 127 ~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 206 (430)
++++.|++++||++.... ..++.+. .|...|++++|+|.++++++|+.|++|++||++++++...+..|.
T Consensus 219 ~s~s~D~tiriwd~~~~~-------~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs-- 288 (456)
T KOG0266|consen 219 LSGSDDKTLRIWDLKDDG-------RNLKTLK-GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS-- 288 (456)
T ss_pred EEecCCceEEEeeccCCC-------eEEEEec-CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccC--
Confidence 999999999999983221 2566766 899999999999999999999999999999999999999999986
Q ss_pred CCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc-ceEEEeecCCC--eEEEEecCCCCEEEEEeCCCcEE
Q 014154 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETP--IKAVAEEPDSFNIYIGNGSGDLA 283 (430)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~--i~~~~~sp~~~~l~~~~~d~~i~ 283 (430)
..|++++| ++++++|++++.|+.|++||+.++.. ++..+..+... ++++.|+|++.+|++++.|+.++
T Consensus 289 -------~~is~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~ 359 (456)
T KOG0266|consen 289 -------DGISGLAF--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK 359 (456)
T ss_pred -------CceEEEEE--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence 78999999 99999999999999999999998763 24566666544 99999999999999999999999
Q ss_pred EEEccCCeEEeeeeCCCCC--CeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-
Q 014154 284 SVDIRTGKLLGCFIGKCSG--SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA- 360 (430)
Q Consensus 284 iwd~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~- 360 (430)
+||++.+..+..+.+|... .+.+...++.+.++++|+.|+.|++||+.++..+.. +.+|....+..++++|...+
T Consensus 360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~--l~~h~~~~~~~~~~~~~~~~~ 437 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQR--LEGHSKAAVSDLSSHPTENLI 437 (456)
T ss_pred EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhh--hcCCCCCceeccccCCCcCee
Confidence 9999999999999998443 344555678899999999999999999999888887 66774566799999999998
Q ss_pred cccC--CCCceEecCCCC
Q 014154 361 NAAA--DAPMLEIQNGND 376 (430)
Q Consensus 361 ~~~~--~d~~i~~~~~~~ 376 (430)
++++ .|+.+++|..+.
T Consensus 438 ~s~s~~~d~~~~~w~~~~ 455 (456)
T KOG0266|consen 438 ASSSFEGDGLIRLWKYDF 455 (456)
T ss_pred eecCcCCCceEEEecCCC
Confidence 6666 799999998753
No 33
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-32 Score=248.14 Aligned_cols=315 Identities=16% Similarity=0.161 Sum_probs=254.4
Q ss_pred cCCCceEEEEccCCCCC--cceee--eecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCC
Q 014154 21 DSLGLIKVIEARGEHGG--VPKVV--ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (430)
Q Consensus 21 ~~dg~i~vw~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 96 (430)
-++++|..+.++..... .+..+ -.+.+|...|..++++-+. ..+++| ..+.|+||+..+.++++++..
T Consensus 341 l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~----~~~~Sg-a~~SikiWn~~t~kciRTi~~--- 412 (888)
T KOG0306|consen 341 LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS----ILLASG-AGESIKIWNRDTLKCIRTITC--- 412 (888)
T ss_pred eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc----eeeeec-CCCcEEEEEccCcceeEEecc---
Confidence 67788888877662111 11111 3467899997777776532 244444 568999999999999999875
Q ss_pred CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCE
Q 014154 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF 176 (430)
Q Consensus 97 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~ 176 (430)
+.+.+..+.+.+. .++.|...|.+.+++++... .+..-. +|.+.|+.++.+|++..
T Consensus 413 -------~y~l~~~Fvpgd~--------~Iv~G~k~Gel~vfdlaS~~--------l~Eti~-AHdgaIWsi~~~pD~~g 468 (888)
T KOG0306|consen 413 -------GYILASKFVPGDR--------YIVLGTKNGELQVFDLASAS--------LVETIR-AHDGAIWSISLSPDNKG 468 (888)
T ss_pred -------ccEEEEEecCCCc--------eEEEeccCCceEEEEeehhh--------hhhhhh-ccccceeeeeecCCCCc
Confidence 3566666766554 89999999999999987543 222222 67899999999999999
Q ss_pred EEEEeCCCeEEEEECCC-----CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcce
Q 014154 177 SLFGGKGVEVNVWDLDK-----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV 251 (430)
Q Consensus 177 l~~~~~d~~i~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 251 (430)
+++|+.|.+|++||+.- +.....+..+.... +.-...|.|+.+ +||+.+|+++--|.+|+||-+.+.+ ..
T Consensus 469 ~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt--Lel~ddvL~v~~--Spdgk~LaVsLLdnTVkVyflDtlK-Ff 543 (888)
T KOG0306|consen 469 FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT--LELEDDVLCVSV--SPDGKLLAVSLLDNTVKVYFLDTLK-FF 543 (888)
T ss_pred eEEecCCcEEEEEeEEEEeccCcccceeeeeccceE--EeccccEEEEEE--cCCCcEEEEEeccCeEEEEEeccee-ee
Confidence 99999999999999741 11111122221111 122477999999 9999999999999999999999855 47
Q ss_pred EEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154 252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 252 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
..+.+|.-||.|+.+|||++++++|+.|..|++|-+.-|.|-..+.+| ...|.++.|.|...++.++|.|+.|+-||-.
T Consensus 544 lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH-dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~ 622 (888)
T KOG0306|consen 544 LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH-DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGE 622 (888)
T ss_pred eeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc-cCceeEEEEcccceeEEEecCcceEEeechh
Confidence 789999999999999999999999999999999999999999999998 8999999999999999999999999999999
Q ss_pred CCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 332 TRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 332 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
..+++.. +.+|... |++++.+|+|.+ ++++.|.+|++|....
T Consensus 623 kFe~iq~--L~~H~~e-v~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 623 KFEEIQK--LDGHHSE-VWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hhhhhee--eccchhe-eeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 9999988 7788544 699999999999 9999999999999876
No 34
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-32 Score=213.70 Aligned_cols=285 Identities=16% Similarity=0.162 Sum_probs=227.7
Q ss_pred eeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccc
Q 014154 41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (430)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 120 (430)
.+..+..+.++|.++.++ -+|+|.++++.|.+|++|++..|.+++++.+| ...+........+
T Consensus 9 r~~~l~~~qgaV~avryN----~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh--------G~EVlD~~~s~Dn----- 71 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYN----VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH--------GHEVLDAALSSDN----- 71 (307)
T ss_pred hceeecccccceEEEEEc----cCCCEEEEcCCCceEEeecccccceeeeecCC--------Cceeeeccccccc-----
Confidence 455677788886665554 47889999999999999999999999998774 3466555544433
Q ss_pred ccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeeE
Q 014154 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC--EKIW 198 (430)
Q Consensus 121 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~ 198 (430)
..+.+|+.|..+.+|+++... .++.|. .|.+.|..++|+.+...+++|+.|.++++||.++. +++.
T Consensus 72 ---skf~s~GgDk~v~vwDV~TGk--------v~Rr~r-gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 72 ---SKFASCGGDKAVQVWDVNTGK--------VDRRFR-GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred ---cccccCCCCceEEEEEcccCe--------eeeecc-cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccc
Confidence 489999999999999998665 778887 78999999999999999999999999999999753 3444
Q ss_pred eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC
Q 014154 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG 278 (430)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 278 (430)
.+.... +.|.++.. .+..|+.|+.||+++.||++.+.. .... -..+|+|++|+++++..++++.
T Consensus 140 ildea~---------D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l-~sDy--~g~pit~vs~s~d~nc~La~~l 203 (307)
T KOG0316|consen 140 ILDEAK---------DGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTL-SSDY--FGHPITSVSFSKDGNCSLASSL 203 (307)
T ss_pred hhhhhc---------CceeEEEe----cccEEEeeccCCcEEEEEeeccee-ehhh--cCCcceeEEecCCCCEEEEeec
Confidence 443332 66888888 577899999999999999998653 2222 3469999999999999999999
Q ss_pred CCcEEEEEccCCeEEeeeeCCCCCCeE--EEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154 279 SGDLASVDIRTGKLLGCFIGKCSGSIR--SIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 279 d~~i~iwd~~~~~~~~~~~~~~~~~v~--~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~ 356 (430)
|++|++.|-.+|+++..+++| ...-+ ..+++.....+++|++||.|++||+.....+.. +..+..-.+.+++++|
T Consensus 204 ~stlrLlDk~tGklL~sYkGh-kn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk--~~~~~~v~v~dl~~hp 280 (307)
T KOG0316|consen 204 DSTLRLLDKETGKLLKSYKGH-KNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISK--LSVVSTVIVTDLSCHP 280 (307)
T ss_pred cceeeecccchhHHHHHhccc-ccceeeeeeeecccceeEEeccCCceEEEEEeccceeeee--eccCCceeEEeeeccc
Confidence 999999999999999999998 44333 445667778999999999999999999998887 4445344489999999
Q ss_pred cccccccCCCCceEecC
Q 014154 357 KEVANAAADAPMLEIQN 373 (430)
Q Consensus 357 ~g~~~~~~~d~~i~~~~ 373 (430)
.-.-+....+..+..|.
T Consensus 281 ~~~~f~~A~~~~~~~~~ 297 (307)
T KOG0316|consen 281 TMDDFITATGHGDLFWY 297 (307)
T ss_pred CccceeEecCCceecee
Confidence 87664444445555554
No 35
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-31 Score=238.13 Aligned_cols=329 Identities=12% Similarity=0.067 Sum_probs=260.5
Q ss_pred cccCCCCCCC--cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecC
Q 014154 5 TTLECPGCPP--LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP 82 (430)
Q Consensus 5 ~~~~~~~~~~--~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~ 82 (430)
-.+.|....| -.++++-..|.|.|||.++. .++..+.-..-+|+...|-. .-+++++|+.|..|+||++
T Consensus 14 dRVKsVd~HPtePw~la~LynG~V~IWnyetq-----tmVksfeV~~~PvRa~kfia----RknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 14 DRVKSVDFHPTEPWILAALYNGDVQIWNYETQ-----TMVKSFEVSEVPVRAAKFIA----RKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred CceeeeecCCCCceEEEeeecCeeEEEecccc-----eeeeeeeecccchhhheeee----ccceEEEecCCceEEEEec
Confidence 3455666655 45788889999999999996 67777776666655444433 3458999999999999999
Q ss_pred CCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCC
Q 014154 83 LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS 162 (430)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~ 162 (430)
.+++.+..|+. |.+.|.++.+.+..+ .+++++.|-.+++|+-+..-. ..+.|. .|.
T Consensus 85 nt~ekV~~FeA--------H~DyIR~iavHPt~P--------~vLtsSDDm~iKlW~we~~wa-------~~qtfe-GH~ 140 (794)
T KOG0276|consen 85 NTGEKVKTFEA--------HSDYIRSIAVHPTLP--------YVLTSSDDMTIKLWDWENEWA-------CEQTFE-GHE 140 (794)
T ss_pred ccceeeEEeec--------cccceeeeeecCCCC--------eEEecCCccEEEEeeccCcee-------eeeEEc-Ccc
Confidence 99999988776 456888888888776 999999999999998653321 445555 788
Q ss_pred CceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE
Q 014154 163 GTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (430)
Q Consensus 163 ~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 241 (430)
..|.+++|+| +.+.+++++.|++|++|.+.+..+.+++.+|. ..|+|+.|.+.++..+|++|+.|.+|+|
T Consensus 141 HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHe---------kGVN~Vdyy~~gdkpylIsgaDD~tiKv 211 (794)
T KOG0276|consen 141 HYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHE---------KGVNCVDYYTGGDKPYLISGADDLTIKV 211 (794)
T ss_pred eEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccc---------cCcceEEeccCCCcceEEecCCCceEEE
Confidence 8999999999 67899999999999999999999999999886 6799999976667779999999999999
Q ss_pred EECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeC
Q 014154 242 YDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL 321 (430)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~ 321 (430)
||.++. .+++++.+|...|..+.|+|.-..+++|++||+++||+..+.++..++.-. -.++++|+-.+.+..++.|.+
T Consensus 212 WDyQtk-~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g-leRvW~I~~~k~~~~i~vG~D 289 (794)
T KOG0276|consen 212 WDYQTK-SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG-LERVWCIAAHKGDGKIAVGFD 289 (794)
T ss_pred eecchH-HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC-CceEEEEeecCCCCeEEEecc
Confidence 999994 469999999999999999999999999999999999999999988887765 679999999998888888877
Q ss_pred CCcEEEEECC----------CCceeeE-------EEee--cc-------------------ccceEEeeecccccccccc
Q 014154 322 DSYLRFWDIK----------TRQLLSA-------VFLK--QH-------------------LNEVVFDSAFADKEVANAA 363 (430)
Q Consensus 322 dg~i~iwd~~----------~~~~~~~-------~~~~--~~-------------------~~~~v~~~~~s~~g~~~~~ 363 (430)
.|.|.+ .+- +|+.+.. ..++ +. ..-.--.++-+|+|+++++
T Consensus 290 eg~i~v-~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~V 368 (794)
T KOG0276|consen 290 EGSVTV-KLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVV 368 (794)
T ss_pred CCcEEE-EccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEE
Confidence 775543 221 1221111 0000 00 0000124678999999988
Q ss_pred CCCCceEecCCCCCc
Q 014154 364 ADAPMLEIQNGNDTQ 378 (430)
Q Consensus 364 ~~d~~i~~~~~~~~~ 378 (430)
+.||.-.||..-..+
T Consensus 369 cgdGEyiIyTala~R 383 (794)
T KOG0276|consen 369 CGDGEYIIYTALALR 383 (794)
T ss_pred ecCccEEEEEeeehh
Confidence 999999998866544
No 36
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.4e-31 Score=224.15 Aligned_cols=284 Identities=14% Similarity=0.196 Sum_probs=222.5
Q ss_pred CceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecC
Q 014154 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (430)
Q Consensus 65 g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~ 144 (430)
++++++|+.||.++|||. .|+....+.+| .+++..+.+....... ..+++++.|.++.+|.+....
T Consensus 115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~Gh--------t~~ik~v~~v~~n~~~-----~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL-KGKSIKTIVGH--------TGPIKSVAWVIKNSSS-----CLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred CceEEEeecCCeeEEEec-CCceEEEEecC--------CcceeeeEEEecCCcc-----ceEEEecCCceEEEEEecCch
Confidence 368999999999999997 68888887764 4577767776655422 579999999999999987654
Q ss_pred ccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeEee--------------CCCCCCCC
Q 014154 145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE--KIWTA--------------KPPPKNSL 208 (430)
Q Consensus 145 ~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~--------------~~~~~~~~ 208 (430)
. ....++.-. .|...|.++...+++..+++|+.|.+|.+|+.++.. .+... .....-..
T Consensus 181 ~----~~~~~~~~~-GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt 255 (423)
T KOG0313|consen 181 N----KVKALKVCR-GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT 255 (423)
T ss_pred h----hhhHHhHhc-ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence 3 111222222 788999999999999999999999999999943210 00000 00001111
Q ss_pred CCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEcc
Q 014154 209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (430)
Q Consensus 209 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 288 (430)
...|...|.++.| ++ ...+++++.|.+|+.||+.++.. ...+.+ ...+.|+.++|..++|++|+.|..|++||.+
T Consensus 256 l~GHt~~Vs~V~w--~d-~~v~yS~SwDHTIk~WDletg~~-~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR 330 (423)
T KOG0313|consen 256 LEGHTEPVSSVVW--SD-ATVIYSVSWDHTIKVWDLETGGL-KSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPR 330 (423)
T ss_pred ecccccceeeEEE--cC-CCceEeecccceEEEEEeecccc-eeeeec-CcceeEeecccccceeeecCCCCceeecCCC
Confidence 2235688999999 44 77899999999999999999775 555554 3689999999999999999999999999999
Q ss_pred CCe---EEeeeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEEEECCCCc-eeeEEEeeccccceEEeeecccccccccc
Q 014154 289 TGK---LLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQ-LLSAVFLKQHLNEVVFDSAFADKEVANAA 363 (430)
Q Consensus 289 ~~~---~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~~~~ 363 (430)
++. ..+.|.+| .+.|.++.|+|.. .+|++++.|+++++||+++-. ++.. +.+| ...|.++.|+.-+.+++|
T Consensus 331 ~~~gs~v~~s~~gH-~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plyd--I~~h-~DKvl~vdW~~~~~IvSG 406 (423)
T KOG0313|consen 331 TGDGSVVSQSLIGH-KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYD--IAGH-NDKVLSVDWNEGGLIVSG 406 (423)
T ss_pred CCCCceeEEeeecc-hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCccee--eccC-CceEEEEeccCCceEEec
Confidence 764 46788898 8899999999976 468999999999999999877 7877 6788 666799999977777999
Q ss_pred CCCCceEecCCCC
Q 014154 364 ADAPMLEIQNGND 376 (430)
Q Consensus 364 ~~d~~i~~~~~~~ 376 (430)
+.|++|+++....
T Consensus 407 GaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 407 GADNKLRIFKGSP 419 (423)
T ss_pred cCcceEEEecccc
Confidence 9999999997654
No 37
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=3.7e-31 Score=221.69 Aligned_cols=283 Identities=14% Similarity=0.121 Sum_probs=225.2
Q ss_pred CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
+..++||+.||++++|+..+ +....+.+|.+++..++.-.. .+....+++++.|.++++|.++.+........
T Consensus 115 ~~~IltgsYDg~~riWd~~G------k~~~~~~Ght~~ik~v~~v~~-n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~ 187 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKG------KSIKTIVGHTGPIKSVAWVIK-NSSSCLFVSASMDQTLRLWKWNVGENKVKALK 187 (423)
T ss_pred CceEEEeecCCeeEEEecCC------ceEEEEecCCcceeeeEEEec-CCccceEEEecCCceEEEEEecCchhhhhHHh
Confidence 46799999999999999998 688899999999775444332 22334699999999999999987765433322
Q ss_pred cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc-----------------cccCCCcceEE
Q 014154 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV-----------------SAESSCSTVKS 156 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~-----------------~~~~~~~~i~~ 156 (430)
. ..+|...+.++...... .++++++-|..+.||+....+. -.+....++ +
T Consensus 188 ~----~~GHk~~V~sVsv~~sg--------tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~-v 254 (423)
T KOG0313|consen 188 V----CRGHKRSVDSVSVDSSG--------TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL-V 254 (423)
T ss_pred H----hcccccceeEEEecCCC--------CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce-E
Confidence 1 12566677776665544 4999999999999999433322 001111122 2
Q ss_pred eeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC
Q 014154 157 WNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND 236 (430)
Q Consensus 157 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 236 (430)
--..|..+|.++.|++ ...+++++.|.+|+.||++++....++... ..++++.+ +|...+|++|+.|
T Consensus 255 tl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~----------ksl~~i~~--~~~~~Ll~~gssd 321 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN----------KSLNCISY--SPLSKLLASGSSD 321 (423)
T ss_pred EecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC----------cceeEeec--ccccceeeecCCC
Confidence 2236788999999997 778999999999999999999888777664 56889999 7889999999999
Q ss_pred CcEEEEECCCCC--cceEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCe-EEeeeeCCCCCCeEEEEecCC
Q 014154 237 HQVRLYDTSAQR--RPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 237 g~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~i~~~~~ 312 (430)
..|++||.+++. .+.+.+.+|...|.++.|+|.. ..|++|+.|+++++||+|+.+ +++.+.+| ...|.++.|+ +
T Consensus 322 r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h-~DKvl~vdW~-~ 399 (423)
T KOG0313|consen 322 RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH-NDKVLSVDWN-E 399 (423)
T ss_pred CceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC-CceEEEEecc-C
Confidence 999999999754 3567888999999999999976 567899999999999999888 89999999 9999999996 4
Q ss_pred CCeEEEEeCCCcEEEEECC
Q 014154 313 LPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 313 ~~~l~s~~~dg~i~iwd~~ 331 (430)
+.++++||.|++|+|+...
T Consensus 400 ~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 400 GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CceEEeccCcceEEEeccc
Confidence 5589999999999998643
No 38
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=227.12 Aligned_cols=293 Identities=18% Similarity=0.158 Sum_probs=230.6
Q ss_pred eeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc---cceeeccCCCCCCCCCCceEEEEEeecCcc
Q 014154 41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL---RVAISNAGDSGAQPEDDGIVGLHLFKRQRE 117 (430)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 117 (430)
..+.+..|.+.|..+.| +++|+|||+++.|.+..||.+..... ..++. ++..++..+.|.+.+
T Consensus 216 t~qil~~htdEVWfl~F----S~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv--------gh~~~V~yi~wSPDd-- 281 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQF----SHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLV--------GHSQPVSYIMWSPDD-- 281 (519)
T ss_pred hhhhHhhCCCcEEEEEE----cCCCeeEeeccCCceEEEEEEecCcceeeeeeee--------cccCceEEEEECCCC--
Confidence 34567779999776666 56899999999999999999864433 33333 344577766665554
Q ss_pred cccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 014154 118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI 197 (430)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 197 (430)
.++++|+.+..+.+|++..+. ..+.|...++..+.+.+|.|++..+++|+.|+++..||++. +..
T Consensus 282 ------ryLlaCg~~e~~~lwDv~tgd--------~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~ 346 (519)
T KOG0293|consen 282 ------RYLLACGFDEVLSLWDVDTGD--------LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NIL 346 (519)
T ss_pred ------CeEEecCchHheeeccCCcch--------hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chh
Confidence 499999999999999987554 44455544567899999999999999999999999999964 333
Q ss_pred EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe
Q 014154 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (430)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 277 (430)
...+.... ..|.+++. ++||.++++.+.|..|++|+..+... +..+. -..+|+++++|.+++++++--
T Consensus 347 ~~W~gvr~--------~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~d-r~lis-e~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 347 GNWEGVRD--------PKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVD-RGLIS-EEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred hccccccc--------ceeEEEEE--cCCCcEEEEEecccceeeechhhhhh-hcccc-ccCceeEEEEcCCCcEEEEEc
Confidence 33333221 44888999 89999999999999999999886322 22333 347999999999999999999
Q ss_pred CCCcEEEEEccCCeEEeeeeCCCCC-CeEEEEecC-CCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecc
Q 014154 278 GSGDLASVDIRTGKLLGCFIGKCSG-SIRSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFA 355 (430)
Q Consensus 278 ~d~~i~iwd~~~~~~~~~~~~~~~~-~v~~i~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 355 (430)
.+..|++||++..+.+..+.||..+ -+..-+|-- +..++++||+|+.|+||+..+++++.+ +.||. ..|++++|+
T Consensus 415 ~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~--LsGHs-~~vNcVswN 491 (519)
T KOG0293|consen 415 QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAV--LSGHS-KTVNCVSWN 491 (519)
T ss_pred ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEe--ecCCc-ceeeEEecC
Confidence 9999999999998899999998322 233445543 457999999999999999999999998 88994 557999999
Q ss_pred ccccc--cccCCCCceEecCCCCC
Q 014154 356 DKEVA--NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 356 ~~g~~--~~~~~d~~i~~~~~~~~ 377 (430)
|.... +++++||+|+||.....
T Consensus 492 P~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 492 PADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CCCHHHhhccCCCCeEEEecCCcc
Confidence 98765 99999999999987653
No 39
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=8e-33 Score=238.56 Aligned_cols=291 Identities=14% Similarity=0.188 Sum_probs=236.3
Q ss_pred eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC-CcccceeeccCCCCCCCCCCceEEEEEeecCccc
Q 014154 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE 118 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 118 (430)
+++..|.+|...|.++.+.. ..+.+|++++.|+.|+||++-. +++++++.+| ..++..+.+.+..
T Consensus 205 k~~~~~~gH~kgvsai~~fp---~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH--------~k~Vrd~~~s~~g--- 270 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFP---KKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH--------RKPVRDASFNNCG--- 270 (503)
T ss_pred hheeeccCCccccchhhhcc---ceeeEEEecCCCceEEEEEEecCcceehhhhcc--------hhhhhhhhccccC---
Confidence 56788999999977776654 2567999999999999999976 8888888775 3466666665544
Q ss_pred ccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeee
Q 014154 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKI 197 (430)
Q Consensus 119 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~ 197 (430)
..+++++.|..+++|+++.+. .+..+ ..+..+.|+.|+|++ +.+++|+.|+.|+.||+++++.+
T Consensus 271 -----~~fLS~sfD~~lKlwDtETG~--------~~~~f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv 335 (503)
T KOG0282|consen 271 -----TSFLSASFDRFLKLWDTETGQ--------VLSRF--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV 335 (503)
T ss_pred -----Ceeeeeecceeeeeeccccce--------EEEEE--ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH
Confidence 489999999999999987654 23333 446788999999988 88999999999999999999988
Q ss_pred EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe
Q 014154 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (430)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 277 (430)
.++..|- ..|..+.| -+++.++++.+.|++++||+.+.+-........+.....++..+|+++++++-+
T Consensus 336 qeYd~hL---------g~i~~i~F--~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs 404 (503)
T KOG0282|consen 336 QEYDRHL---------GAILDITF--VDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS 404 (503)
T ss_pred HHHHhhh---------hheeeeEE--ccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc
Confidence 8877654 77999999 689999999999999999999875432222222334567899999999999999
Q ss_pred CCCcEEEEEccCCe---EEeeeeCCC-CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeee
Q 014154 278 GSGDLASVDIRTGK---LLGCFIGKC-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSA 353 (430)
Q Consensus 278 ~d~~i~iwd~~~~~---~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 353 (430)
.|+.|.+|.+...- ....|.+|. .+.-..+.|||||.+|++|+.||.+.+||.++-+++.. ++.| ...+..+.
T Consensus 405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~--lkah-~~~ci~v~ 481 (503)
T KOG0282|consen 405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSK--LKAH-DQPCIGVD 481 (503)
T ss_pred cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhc--cccC-CcceEEEE
Confidence 99999999875322 234566662 23456789999999999999999999999999999988 7778 67789999
Q ss_pred ccccccc--cccCCCCceEecC
Q 014154 354 FADKEVA--NAAADAPMLEIQN 373 (430)
Q Consensus 354 ~s~~g~~--~~~~~d~~i~~~~ 373 (430)
|+|...- ++++.||.|++|+
T Consensus 482 wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 482 WHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ecCCCcceeEecccCceeEecC
Confidence 9998765 8899999999996
No 40
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.1e-30 Score=207.01 Aligned_cols=292 Identities=13% Similarity=0.128 Sum_probs=222.0
Q ss_pred eeeecCCCCCCcceeeeeecCCCC-CceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154 41 VVERWGDPHSSNCVLAASIDDSQN-DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~p~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
.++.+.+|.+.+..++ + +|- |..||+++.|..|+||+...+.. ...+.+.. .+|...+.++.+.+..
T Consensus 6 ~~~~~~gh~~r~W~~a--w--hp~~g~ilAscg~Dk~vriw~~~~~~s-~~ck~vld---~~hkrsVRsvAwsp~g---- 73 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVA--W--HPGKGVILASCGTDKAVRIWSTSSGDS-WTCKTVLD---DGHKRSVRSVAWSPHG---- 73 (312)
T ss_pred eEEeecCCCCcEEEEE--e--ccCCceEEEeecCCceEEEEecCCCCc-EEEEEecc---ccchheeeeeeecCCC----
Confidence 4566788888655444 4 555 77999999999999999864332 22222111 1456677777776655
Q ss_pred cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ee
Q 014154 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC---EK 196 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~---~~ 196 (430)
.++++++.|.++.||.-... .-..+.... .|..+|.|++|+++|++||+++.|..|.+|.+..+ ++
T Consensus 74 ----~~La~aSFD~t~~Iw~k~~~------efecv~~lE-GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec 142 (312)
T KOG0645|consen 74 ----RYLASASFDATVVIWKKEDG------EFECVATLE-GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFEC 142 (312)
T ss_pred ----cEEEEeeccceEEEeecCCC------ceeEEeeee-ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEE
Confidence 48999999999999974311 112333443 68899999999999999999999999999999743 44
Q ss_pred eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC--CCcceEEEeecCCCeEEEEecCCCCEEE
Q 014154 197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA--QRRPVMSFDFRETPIKAVAEEPDSFNIY 274 (430)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~i~~~~~sp~~~~l~ 274 (430)
...++.|. ..|..+.| +|...+|++++.|.+|++|+-.. ....++++.+|+..|.+++|+|.|..|+
T Consensus 143 ~aVL~~Ht---------qDVK~V~W--HPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~ 211 (312)
T KOG0645|consen 143 IAVLQEHT---------QDVKHVIW--HPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLV 211 (312)
T ss_pred Eeeecccc---------ccccEEEE--cCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEE
Confidence 55666655 66889999 78889999999999999998762 2346889999999999999999999999
Q ss_pred EEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCC------ceeeEEEeeccccce
Q 014154 275 IGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR------QLLSAVFLKQHLNEV 348 (430)
Q Consensus 275 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~ 348 (430)
+++.|++++||-+. ..+...|...++.+.|. ...|++++.|+.|++|.-... +++... ...| ..-
T Consensus 212 s~sdD~tv~Iw~~~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aH-e~d 282 (312)
T KOG0645|consen 212 SCSDDGTVSIWRLY-----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAH-EVD 282 (312)
T ss_pred EecCCcceEeeeec-----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hccc-ccc
Confidence 99999999999865 33444447899999997 447999999999999976542 111111 2334 445
Q ss_pred EEeeeccc--cccccccCCCCceEecCCC
Q 014154 349 VFDSAFAD--KEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 349 v~~~~~s~--~g~~~~~~~d~~i~~~~~~ 375 (430)
|++++|+| .+.++++++||.+++|...
T Consensus 283 VNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 283 VNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cceEEEcCCCCCceeecCCCceEEEEEec
Confidence 79999999 4555999999999999753
No 41
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-30 Score=212.58 Aligned_cols=269 Identities=16% Similarity=0.179 Sum_probs=221.3
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..++||+.|..|.+|++.... +-...+.+|.+. ++.+-+ .+|++.|++++.|.+|+.||+++|+.+..+++|
T Consensus 60 s~~aSgG~Dr~I~LWnv~gdc----eN~~~lkgHsgA--VM~l~~--~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h 131 (338)
T KOG0265|consen 60 SCFASGGSDRAIVLWNVYGDC----ENFWVLKGHSGA--VMELHG--MRDGSHILSCGTDKTVRGWDAETGKRIRKHKGH 131 (338)
T ss_pred CeEeecCCcceEEEEeccccc----cceeeeccccce--eEeeee--ccCCCEEEEecCCceEEEEecccceeeehhccc
Confidence 468999999999999987632 233456689888 556655 778889999999999999999999999998875
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
.. -+..+....... ..+.+++.|+++++|++.... .++.+. ...+++++.|...+
T Consensus 132 ~~--------~vNs~~p~rrg~-------~lv~SgsdD~t~kl~D~R~k~--------~~~t~~--~kyqltAv~f~d~s 186 (338)
T KOG0265|consen 132 TS--------FVNSLDPSRRGP-------QLVCSGSDDGTLKLWDIRKKE--------AIKTFE--NKYQLTAVGFKDTS 186 (338)
T ss_pred cc--------eeeecCccccCC-------eEEEecCCCceEEEEeecccc--------hhhccc--cceeEEEEEecccc
Confidence 32 333333222222 467788889999999987433 444442 34679999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC---CCcce
Q 014154 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA---QRRPV 251 (430)
Q Consensus 175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~ 251 (430)
..+++|+-|+.|++||++.....+.+.+|. +.|+.+.. +++|.++.+-+.|.++++||++. .++.+
T Consensus 187 ~qv~sggIdn~ikvWd~r~~d~~~~lsGh~---------DtIt~lsl--s~~gs~llsnsMd~tvrvwd~rp~~p~~R~v 255 (338)
T KOG0265|consen 187 DQVISGGIDNDIKVWDLRKNDGLYTLSGHA---------DTITGLSL--SRYGSFLLSNSMDNTVRVWDVRPFAPSQRCV 255 (338)
T ss_pred cceeeccccCceeeeccccCcceEEeeccc---------CceeeEEe--ccCCCccccccccceEEEEEecccCCCCceE
Confidence 999999999999999999999999999886 88999999 89999999999999999999985 23346
Q ss_pred EEEeecC----CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEE
Q 014154 252 MSFDFRE----TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF 327 (430)
Q Consensus 252 ~~~~~~~----~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~i 327 (430)
..+.+|. .....++|+|++..+-+|+.|..+++||......++.+.+| .+.|.+++|+|...+|.+++.|.+|++
T Consensus 256 ~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh-~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 256 KIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH-YGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred EEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc-ceeEEEeeecCCCcEEEEeccCceeEe
Confidence 6777753 24457789999999999999999999999888999999999 999999999999999999999999986
Q ss_pred E
Q 014154 328 W 328 (430)
Q Consensus 328 w 328 (430)
=
T Consensus 335 g 335 (338)
T KOG0265|consen 335 G 335 (338)
T ss_pred e
Confidence 3
No 42
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.4e-30 Score=226.94 Aligned_cols=268 Identities=18% Similarity=0.252 Sum_probs=220.5
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..+++++.||.|++|++..+ +....+..|...+ ..+.+ .|++++|++++.+|.|++|++.+++.+..+..
T Consensus 22 ~~l~~~~~~g~i~i~~~~~~-----~~~~~~~~~~~~i--~~~~~--~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~- 91 (289)
T cd00200 22 KLLATGSGDGTIKVWDLETG-----ELLRTLKGHTGPV--RDVAA--SADGTYLASGSSDKTIRLWDLETGECVRTLTG- 91 (289)
T ss_pred CEEEEeecCcEEEEEEeeCC-----CcEEEEecCCcce--eEEEE--CCCCCEEEEEcCCCeEEEEEcCcccceEEEec-
Confidence 67888889999999999986 4566677777764 35555 66778999999999999999988776666554
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
+...+.++.+.+.. ..++++..++.+.+|++.... .+..+. .+...+.+++|+|++
T Consensus 92 -------~~~~i~~~~~~~~~--------~~~~~~~~~~~i~~~~~~~~~--------~~~~~~-~~~~~i~~~~~~~~~ 147 (289)
T cd00200 92 -------HTSYVSSVAFSPDG--------RILSSSSRDKTIKVWDVETGK--------CLTTLR-GHTDWVNSVAFSPDG 147 (289)
T ss_pred -------cCCcEEEEEEcCCC--------CEEEEecCCCeEEEEECCCcE--------EEEEec-cCCCcEEEEEEcCcC
Confidence 23467777766542 366777779999999986221 344444 467789999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE
Q 014154 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 254 (430)
.++++++.++.|++||+.+++.+..+..+. ..+.++.| +|++..+++++.++.|++||++.+. ++..+
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~--~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~ 215 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGKCVATLTGHT---------GEVNSVAF--SPDGEKLLSSSSDGTIKLWDLSTGK-CLGTL 215 (289)
T ss_pred CEEEEEcCCCcEEEEEccccccceeEecCc---------cccceEEE--CCCcCEEEEecCCCcEEEEECCCCc-eecch
Confidence 999988889999999999887777666543 57899999 8899899999999999999999754 46777
Q ss_pred eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEE
Q 014154 255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD 329 (430)
Q Consensus 255 ~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd 329 (430)
..|...+.++.|+|++.++++++.++.|++||+.+++.+..+..| ...|.+++|+|++.+|++++.|+.|++|+
T Consensus 216 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH-TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc-CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 788889999999999888888888999999999999999899887 88999999999999999999999999996
No 43
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=7.5e-33 Score=229.37 Aligned_cols=272 Identities=14% Similarity=0.192 Sum_probs=219.0
Q ss_pred eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC
Q 014154 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 133 (430)
+.++.+|+. .+++|..|++|+|||..+..++..+.+| .+.+.++.+-+ ..+++|+.|.
T Consensus 200 VYClQYDD~----kiVSGlrDnTikiWD~n~~~c~~~L~GH--------tGSVLCLqyd~----------rviisGSSDs 257 (499)
T KOG0281|consen 200 VYCLQYDDE----KIVSGLRDNTIKIWDKNSLECLKILTGH--------TGSVLCLQYDE----------RVIVSGSSDS 257 (499)
T ss_pred eEEEEecch----hhhcccccCceEEeccccHHHHHhhhcC--------CCcEEeeeccc----------eEEEecCCCc
Confidence 344555333 6999999999999999888888887764 45776666533 4889999999
Q ss_pred eeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee---eEeeCCCCCCCCCC
Q 014154 134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLGI 210 (430)
Q Consensus 134 ~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~ 210 (430)
+++||++.... +++.+- .|...|..+.|+ ..++++++.|.++.+||+..... .+.+.+|.
T Consensus 258 TvrvWDv~tge--------~l~tli-hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr------ 320 (499)
T KOG0281|consen 258 TVRVWDVNTGE--------PLNTLI-HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHR------ 320 (499)
T ss_pred eEEEEeccCCc--------hhhHHh-hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhh------
Confidence 99999987655 454443 567888888886 67999999999999999976542 23344544
Q ss_pred cCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC
Q 014154 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (430)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 290 (430)
..|+.+.| +.+++++++.|.+|++|++.+.+ .++++.+|...|.|+.+ .++++++|+.|++|++||+..|
T Consensus 321 ---AaVNvVdf----d~kyIVsASgDRTikvW~~st~e-fvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G 390 (499)
T KOG0281|consen 321 ---AAVNVVDF----DDKYIVSASGDRTIKVWSTSTCE-FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG 390 (499)
T ss_pred ---hheeeecc----ccceEEEecCCceEEEEecccee-eehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc
Confidence 77999999 67799999999999999999976 48999999999999887 4889999999999999999999
Q ss_pred eEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeE-------EEeeccccceEEeeecccccccccc
Q 014154 291 KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA-------VFLKQHLNEVVFDSAFADKEVANAA 363 (430)
Q Consensus 291 ~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~~v~~~~~s~~g~~~~~ 363 (430)
.++..++|| +.-|.++.| +.+.+++|+.||.|+|||+..+..... ..+..| .+.|+.+.|. +-++++.
T Consensus 391 ~cLRvLeGH-EeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h-sgRVFrLQFD-~fqIvss 465 (499)
T KOG0281|consen 391 ACLRVLEGH-EELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH-SGRVFRLQFD-EFQIISS 465 (499)
T ss_pred HHHHHHhch-HHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhc-cceeEEEeec-ceEEEec
Confidence 999999999 899999999 677899999999999999987543211 113345 5567999995 3344889
Q ss_pred CCCCceEecCCCCCcc
Q 014154 364 ADAPMLEIQNGNDTQE 379 (430)
Q Consensus 364 ~~d~~i~~~~~~~~~~ 379 (430)
+.|.+|.||+......
T Consensus 466 sHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 466 SHDDTILIWDFLNGPP 481 (499)
T ss_pred cCCCeEEEEEcCCCCc
Confidence 9999999999976544
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-31 Score=241.55 Aligned_cols=280 Identities=15% Similarity=0.172 Sum_probs=238.8
Q ss_pred eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC
Q 014154 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 133 (430)
+-.++| +|..++++++--.|.|++||++-+.++..|.. |++++.++.+.+... .+++|+.|-
T Consensus 12 vKglsF--HP~rPwILtslHsG~IQlWDYRM~tli~rFde--------HdGpVRgv~FH~~qp--------lFVSGGDDy 73 (1202)
T KOG0292|consen 12 VKGLSF--HPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE--------HDGPVRGVDFHPTQP--------LFVSGGDDY 73 (1202)
T ss_pred ccceec--CCCCCEEEEeecCceeeeehhhhhhHHhhhhc--------cCCccceeeecCCCC--------eEEecCCcc
Confidence 456667 89999999999999999999998988888665 567899999888776 999999999
Q ss_pred eeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCC
Q 014154 134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP 213 (430)
Q Consensus 134 ~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 213 (430)
.++||+...... +... ..|-..|..+.|++.-.+|++++.|.+|+||++.+.+++..+.+|.
T Consensus 74 kIkVWnYk~rrc--------lftL-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHn--------- 135 (1202)
T KOG0292|consen 74 KIKVWNYKTRRC--------LFTL-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHN--------- 135 (1202)
T ss_pred EEEEEeccccee--------hhhh-ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCc---------
Confidence 999999764431 1111 3577889999999999999999999999999999999999999876
Q ss_pred cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC----------------------------cceEEEeecCCCeEEEE
Q 014154 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR----------------------------RPVMSFDFRETPIKAVA 265 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----------------------------~~~~~~~~~~~~i~~~~ 265 (430)
..|.|..| +|...++++++-|.+|++||+..-+ ...+.+.+|...|+-++
T Consensus 136 HYVMcAqF--hptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaA 213 (1202)
T KOG0292|consen 136 HYVMCAQF--HPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAA 213 (1202)
T ss_pred eEEEeecc--CCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEE
Confidence 88999999 7888999999999999999986311 01245778999999999
Q ss_pred ecCCCCEEEEEeCCCcEEEEEccCCeE--EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeec
Q 014154 266 EEPDSFNIYIGNGSGDLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQ 343 (430)
Q Consensus 266 ~sp~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 343 (430)
|+|.-.+|++|+.|..|++|.+...+. +-+..+| ...|.++-|+|...++++.|+|++|+|||+..+..++++. .
T Consensus 214 fhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH-~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr--r 290 (1202)
T KOG0292|consen 214 FHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGH-YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR--R 290 (1202)
T ss_pred ecCCcceEEecCCcceeeEEEeccccceeehhhhcc-cCCcceEEecCccceeEecCCCccEEEEecccccceeeee--c
Confidence 999999999999999999999876554 5677898 8999999999999999999999999999999999999853 2
Q ss_pred cccceEEeeeccccccccccCCCCceEecCCC
Q 014154 344 HLNEVVFDSAFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 344 ~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~ 375 (430)
. ...-|.++-+|...+.+++.|+-+.||...
T Consensus 291 e-ndRFW~laahP~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 291 E-NDRFWILAAHPELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred c-CCeEEEEEecCCcceeeeecCCceEEEEEc
Confidence 2 344689999999999888888877777654
No 45
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.8e-31 Score=218.94 Aligned_cols=244 Identities=16% Similarity=0.224 Sum_probs=213.2
Q ss_pred CCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEE
Q 014154 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG 180 (430)
Q Consensus 101 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~ 180 (430)
.|.+.+.++.+-+.+ ..+++++.|+++.||+++.. .+++--..|-..|..+++++-..||+++
T Consensus 149 gHlgWVr~vavdP~n--------~wf~tgs~DrtikIwDlatg---------~LkltltGhi~~vr~vavS~rHpYlFs~ 211 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGN--------EWFATGSADRTIKIWDLATG---------QLKLTLTGHIETVRGVAVSKRHPYLFSA 211 (460)
T ss_pred hccceEEEEeeCCCc--------eeEEecCCCceeEEEEcccC---------eEEEeecchhheeeeeeecccCceEEEe
Confidence 455566666654443 37777778888888877643 4444444566789999999999999999
Q ss_pred eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCC
Q 014154 181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP 260 (430)
Q Consensus 181 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 260 (430)
+.|+.|+.||++..+.++.+.+|- +.|.|++. .|.-..|++|+.|.++++||+++ +..+..+.+|..+
T Consensus 212 gedk~VKCwDLe~nkvIR~YhGHl---------S~V~~L~l--hPTldvl~t~grDst~RvWDiRt-r~~V~~l~GH~~~ 279 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYNKVIRHYHGHL---------SGVYCLDL--HPTLDVLVTGGRDSTIRVWDIRT-RASVHVLSGHTNP 279 (460)
T ss_pred cCCCeeEEEechhhhhHHHhcccc---------ceeEEEec--cccceeEEecCCcceEEEeeecc-cceEEEecCCCCc
Confidence 999999999999999999988875 78999999 78889999999999999999999 4469999999999
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEE
Q 014154 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVF 340 (430)
Q Consensus 261 i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 340 (430)
|.++.+.|-...+++|+.|++|++||++.|+-..++..| ...|.+++.+|....+++++.|. |+-|++..|..++.
T Consensus 280 V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~h-kksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~n-- 355 (460)
T KOG0285|consen 280 VASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHH-KKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQN-- 355 (460)
T ss_pred ceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecc-cceeeEEecCCchhhhhccCCcc-ceeccCCccchhhc--
Confidence 999999998899999999999999999999999999887 89999999999999999999886 99999999999988
Q ss_pred eeccccceEEeeeccccccccccCCCCceEecCCCCCc
Q 014154 341 LKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 341 ~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~~ 378 (430)
+.+| ..++..++...||-+++|++.|.+.+||+....
T Consensus 356 lsgh-~~iintl~~nsD~v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 356 LSGH-NAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred cccc-cceeeeeeeccCceEEEcCCceEEEEEecCcCc
Confidence 7788 778899999999999999999999999987653
No 46
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.9e-31 Score=218.15 Aligned_cols=280 Identities=15% Similarity=0.246 Sum_probs=240.8
Q ss_pred CCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~ 141 (430)
+|||+||++|+.||-|.+||..+|+....++.-....|...++.+.++.+..... .+++++.||.+.||.+.
T Consensus 222 SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE--------MlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 222 SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE--------MLASGSQDGKIKVWRIE 293 (508)
T ss_pred CCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--------HhhccCcCCcEEEEEEe
Confidence 8999999999999999999999999888777655555667778888888766554 99999999999999998
Q ss_pred ecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEE
Q 014154 142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF 221 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 221 (430)
.+. .++.|+-.|...|+|+.|+.++..+++++.|.++++.-+.+|+++.++.+|. +.|+...|
T Consensus 294 tG~--------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHs---------Syvn~a~f 356 (508)
T KOG0275|consen 294 TGQ--------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHS---------SYVNEATF 356 (508)
T ss_pred cch--------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcc---------ccccceEE
Confidence 665 7888998999999999999999999999999999999999999999999986 88999999
Q ss_pred eecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee--cCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeEEeeeeC
Q 014154 222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--RETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIG 298 (430)
Q Consensus 222 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 298 (430)
.++|..+++++.||+|++|+..+.++ +.+++. ...+|.++-.-|.+ ..++++...++|+|.++ .|+.+..|..
T Consensus 357 --t~dG~~iisaSsDgtvkvW~~KtteC-~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsS 432 (508)
T KOG0275|consen 357 --TDDGHHIISASSDGTVKVWHGKTTEC-LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSS 432 (508)
T ss_pred --cCCCCeEEEecCCccEEEecCcchhh-hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeecc
Confidence 89999999999999999999998664 666654 34578888776654 68888889999999998 7888888864
Q ss_pred C--CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecC
Q 014154 299 K--CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQN 373 (430)
Q Consensus 299 ~--~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~ 373 (430)
. ..+...+.+.+|.|.++.+.+.|+.++.|.+.+|.+..+ +.-| ..-+..++-+|.... ++-+.||.+++|.
T Consensus 433 GkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~t--l~Vh-EkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 433 GKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERT--LPVH-EKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeee--eecc-cccccccccCcccchhhhhcccchhhhcC
Confidence 2 134566778999999999999999999999999999888 4455 334578999998888 9999999999995
No 47
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1e-31 Score=231.79 Aligned_cols=269 Identities=15% Similarity=0.191 Sum_probs=220.3
Q ss_pred ceeeecCCCceEEEEccC-CCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 16 RALTFDSLGLIKVIEARG-EHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
.+++++.|+.|+||++.. + .++.+|.+|..+|..+.+ +++|..+++++.|+.|++||+++|+++..+..
T Consensus 229 LlLS~gmD~~vklW~vy~~~-----~~lrtf~gH~k~Vrd~~~----s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~- 298 (503)
T KOG0282|consen 229 LLLSGGMDGLVKLWNVYDDR-----RCLRTFKGHRKPVRDASF----NNCGTSFLSASFDRFLKLWDTETGQVLSRFHL- 298 (503)
T ss_pred EEEecCCCceEEEEEEecCc-----ceehhhhcchhhhhhhhc----cccCCeeeeeecceeeeeeccccceEEEEEec-
Confidence 478999999999999987 4 789999999999665555 55777899999999999999999999988865
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
...+.++.+.+... ..+++|..++.+..|++.... .++-|+ .|-+.|..+.|-+++
T Consensus 299 --------~~~~~cvkf~pd~~-------n~fl~G~sd~ki~~wDiRs~k--------vvqeYd-~hLg~i~~i~F~~~g 354 (503)
T KOG0282|consen 299 --------DKVPTCVKFHPDNQ-------NIFLVGGSDKKIRQWDIRSGK--------VVQEYD-RHLGAILDITFVDEG 354 (503)
T ss_pred --------CCCceeeecCCCCC-------cEEEEecCCCcEEEEeccchH--------HHHHHH-hhhhheeeeEEccCC
Confidence 12444556655543 589999999999999987554 444444 466889999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc--ceE
Q 014154 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR--PVM 252 (430)
Q Consensus 175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~ 252 (430)
.++++.+.|+++++|+...+-.+.....+. .....++.. +|++..++.-+.|..|.+|.+....+ ...
T Consensus 355 ~rFissSDdks~riWe~~~~v~ik~i~~~~--------~hsmP~~~~--~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK 424 (503)
T KOG0282|consen 355 RRFISSSDDKSVRIWENRIPVPIKNIADPE--------MHTMPCLTL--HPNGKWFAAQSMDNYIAIFSTVPPFRLNKKK 424 (503)
T ss_pred ceEeeeccCccEEEEEcCCCccchhhcchh--------hccCcceec--CCCCCeehhhccCceEEEEecccccccCHhh
Confidence 999999999999999998766554333221 134567777 89999999999999999998764221 234
Q ss_pred EEeecC--CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEEEE
Q 014154 253 SFDFRE--TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWD 329 (430)
Q Consensus 253 ~~~~~~--~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd 329 (430)
.+.+|. +--..+.|||||.+|++|+.||.+.+||.++-+++..++.| ..++..+.|+|.. ..+|+|+.||.|++||
T Consensus 425 ~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah-~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 425 RFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH-DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC-CcceEEEEecCCCcceeEecccCceeEecC
Confidence 677774 34567889999999999999999999999999999999998 9999999999965 5799999999999996
No 48
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=4.1e-30 Score=232.83 Aligned_cols=281 Identities=15% Similarity=0.158 Sum_probs=238.2
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..++..+..+.|++|+.++. +++.++... ++++.+| -|.++++++|...|.+.++|+.....+.+++.
T Consensus 385 ~~~~~Sga~~SikiWn~~t~-----kciRTi~~~----y~l~~~F--vpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~A- 452 (888)
T KOG0306|consen 385 SILLASGAGESIKIWNRDTL-----KCIRTITCG----YILASKF--VPGDRYIVLGTKNGELQVFDLASASLVETIRA- 452 (888)
T ss_pred ceeeeecCCCcEEEEEccCc-----ceeEEeccc----cEEEEEe--cCCCceEEEeccCCceEEEEeehhhhhhhhhc-
Confidence 34555566789999999987 788777632 6788888 88889999999999999999998888877765
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEee---ecCCCceEEEEEc
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN---VCASGTIAFSKVD 171 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~---~~~~~~i~~~~~~ 171 (430)
|++.|-.+...+.+. .+++++.|.++.+|+........+.....+.+-. +.-...|.|+.++
T Consensus 453 -------HdgaIWsi~~~pD~~--------g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S 517 (888)
T KOG0306|consen 453 -------HDGAIWSISLSPDNK--------GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS 517 (888)
T ss_pred -------cccceeeeeecCCCC--------ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc
Confidence 456777777776655 8999999999999998765542233222222111 1124679999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcce
Q 014154 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV 251 (430)
Q Consensus 172 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 251 (430)
|++++|+++-.|++|++|-+++.+...++.+|. -+|.|+.. +||+.+++||+.|..|++|-+.-+.+ .
T Consensus 518 pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHk---------LPV~smDI--S~DSklivTgSADKnVKiWGLdFGDC-H 585 (888)
T KOG0306|consen 518 PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHK---------LPVLSMDI--SPDSKLIVTGSADKNVKIWGLDFGDC-H 585 (888)
T ss_pred CCCcEEEEEeccCeEEEEEecceeeeeeecccc---------cceeEEec--cCCcCeEEeccCCCceEEeccccchh-h
Confidence 999999999999999999999999988888886 67999999 89999999999999999999998775 7
Q ss_pred EEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154 252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 252 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
..+-+|...|+++.|-|...++++++.|+.|+-||-...+.++.+.+| ...|++++.+|+|.+++++|.|.+|++|...
T Consensus 586 KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H-~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 586 KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH-HSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred hhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc-hheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 888999999999999999999999999999999999999999999999 7899999999999999999999999999865
Q ss_pred CCce
Q 014154 332 TRQL 335 (430)
Q Consensus 332 ~~~~ 335 (430)
....
T Consensus 665 de~~ 668 (888)
T KOG0306|consen 665 DEIL 668 (888)
T ss_pred Ccce
Confidence 5333
No 49
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=5.8e-30 Score=204.35 Aligned_cols=279 Identities=12% Similarity=0.098 Sum_probs=226.9
Q ss_pred eecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccccc
Q 014154 43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (430)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 122 (430)
..+.+|...+..+++ ..+|..|++|+.|+++.+|++...+...... ..++.+.+.++.+++.+.
T Consensus 14 r~~~~~~~~v~Sv~w----n~~g~~lasgs~dktv~v~n~e~~r~~~~~~------~~gh~~svdql~w~~~~~------ 77 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAW----NCDGTKLASGSFDKTVSVWNLERDRFRKELV------YRGHTDSVDQLCWDPKHP------ 77 (313)
T ss_pred HHhhhhhhcceEEEE----cccCceeeecccCCceEEEEecchhhhhhhc------ccCCCcchhhheeCCCCC------
Confidence 345667777655555 4467799999999999999998775554433 234556777788888776
Q ss_pred CceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCC
Q 014154 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (430)
Q Consensus 123 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 202 (430)
..+++++.+.++++|++..... +. .+...+.=.-+.|+|++++++++..|..|...|.++.+.+.+.+.
T Consensus 78 -d~~atas~dk~ir~wd~r~~k~--------~~--~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~ 146 (313)
T KOG1407|consen 78 -DLFATASGDKTIRIWDIRSGKC--------TA--RIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF 146 (313)
T ss_pred -cceEEecCCceEEEEEeccCcE--------EE--EeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc
Confidence 7999999999999999876542 22 223344555689999999999999999999999988777655443
Q ss_pred CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcE
Q 014154 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL 282 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i 282 (430)
. ..+..+.| +.++.+++.....|.|.|...... +|+..++.|.....||.|+|+|++|++|+.|..+
T Consensus 147 ~----------~e~ne~~w--~~~nd~Fflt~GlG~v~ILsypsL-kpv~si~AH~snCicI~f~p~GryfA~GsADAlv 213 (313)
T KOG1407|consen 147 K----------FEVNEISW--NNSNDLFFLTNGLGCVEILSYPSL-KPVQSIKAHPSNCICIEFDPDGRYFATGSADALV 213 (313)
T ss_pred c----------ceeeeeee--cCCCCEEEEecCCceEEEEecccc-ccccccccCCcceEEEEECCCCceEeecccccee
Confidence 2 45777888 455667776677899999998874 4799999999999999999999999999999999
Q ss_pred EEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-c
Q 014154 283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-N 361 (430)
Q Consensus 283 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~ 361 (430)
-+||+...-+++.+.-+ .-+|+.+.||.+|++||+||+|..|-|=++++|..+..+... +..+.++|+|...+ +
T Consensus 214 SLWD~~ELiC~R~isRl-dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~----~~t~tVAWHPk~~LLA 288 (313)
T KOG1407|consen 214 SLWDVDELICERCISRL-DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE----GPTFTVAWHPKRPLLA 288 (313)
T ss_pred eccChhHhhhheeeccc-cCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc----CCceeEEecCCCceee
Confidence 99999998888889887 899999999999999999999999999999999999987543 33689999999988 6
Q ss_pred ccCCC
Q 014154 362 AAADA 366 (430)
Q Consensus 362 ~~~~d 366 (430)
.+.+|
T Consensus 289 yA~dd 293 (313)
T KOG1407|consen 289 YACDD 293 (313)
T ss_pred EEecC
Confidence 66554
No 50
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.98 E-value=3.2e-31 Score=210.20 Aligned_cols=291 Identities=15% Similarity=0.162 Sum_probs=231.0
Q ss_pred ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccC
Q 014154 44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (430)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 123 (430)
+-.+|+.+|.-++++. -.|+|-+|++++.||.-.+-+-++|.-+.+|.+| .+.+-+..+-...
T Consensus 9 ~c~ghtrpvvdl~~s~-itp~g~flisa~kd~~pmlr~g~tgdwigtfegh--------kgavw~~~l~~na-------- 71 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSP-ITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGH--------KGAVWSATLNKNA-------- 71 (334)
T ss_pred EEcCCCcceeEEeccC-CCCCceEEEEeccCCCchhccCCCCCcEEeeecc--------CcceeeeecCchh--------
Confidence 4567889977777764 4689999999999999988888899988888775 2344332222211
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEeeCC
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKP 202 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~ 202 (430)
-+-++++.|-+..||+..... . +..+.|..-|..++|+.+.++|++|+.+..+++||++..+ +..++.+
T Consensus 72 ~~aasaaadftakvw~a~tgd--------e--lhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 72 TRAASAAADFTAKVWDAVTGD--------E--LHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred hhhhhhcccchhhhhhhhhhh--------h--hhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcC
Confidence 244556666677777744322 2 2234566789999999999999999999999999997643 2344444
Q ss_pred CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcE
Q 014154 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL 282 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i 282 (430)
|. ..|..+.| ....+.|++.+.|++|++||.+++.. ++.+.. ..+|+++.++++|++|.++ ..+.|
T Consensus 142 ht---------g~Ir~v~w--c~eD~~iLSSadd~tVRLWD~rTgt~-v~sL~~-~s~VtSlEvs~dG~ilTia-~gssV 207 (334)
T KOG0278|consen 142 HT---------GGIRTVLW--CHEDKCILSSADDKTVRLWDHRTGTE-VQSLEF-NSPVTSLEVSQDGRILTIA-YGSSV 207 (334)
T ss_pred CC---------CcceeEEE--eccCceEEeeccCCceEEEEeccCcE-EEEEec-CCCCcceeeccCCCEEEEe-cCcee
Confidence 43 77999999 45677888889999999999999775 777765 3689999999999877665 56779
Q ss_pred EEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-c
Q 014154 283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-N 361 (430)
Q Consensus 283 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~ 361 (430)
.+||..+..++..+.. ...|.+..++|+..++++|+.|..++.||..++..+..+ .++|.+ .|.++.|+|+|.. +
T Consensus 208 ~Fwdaksf~~lKs~k~--P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~g-pVhcVrFSPdGE~yA 283 (334)
T KOG0278|consen 208 KFWDAKSFGLLKSYKM--PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFG-PVHCVRFSPDGELYA 283 (334)
T ss_pred EEeccccccceeeccC--ccccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCC-ceEEEEECCCCceee
Confidence 9999999999988887 568999999999999999999999999999999999874 578854 5699999999998 9
Q ss_pred ccCCCCceEecCCCCCcc
Q 014154 362 AAADAPMLEIQNGNDTQE 379 (430)
Q Consensus 362 ~~~~d~~i~~~~~~~~~~ 379 (430)
+|+.||+|++|.....+.
T Consensus 284 sGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 284 SGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ccCCCceEEEEEecCCCc
Confidence 999999999999887654
No 51
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.8e-30 Score=205.39 Aligned_cols=266 Identities=15% Similarity=0.216 Sum_probs=217.8
Q ss_pred cCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCc
Q 014154 73 KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCS 152 (430)
Q Consensus 73 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~ 152 (430)
..|++.|.++..++-+..+..+. -.+.+..+.|..... ..+++++.||++++|++.... +
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d------~~D~LfdV~Wse~~e-------~~~~~a~GDGSLrl~d~~~~s-------~ 95 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYD------TEDGLFDVAWSENHE-------NQVIAASGDGSLRLFDLTMPS-------K 95 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeee------cccceeEeeecCCCc-------ceEEEEecCceEEEeccCCCC-------c
Confidence 45899999987565555554321 125666777776665 799999999999999965543 3
Q ss_pred ceEEeeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE
Q 014154 153 TVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (430)
Q Consensus 153 ~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 231 (430)
+|..|. +|..+|.++.|++ ....+++++.|++|++|+...++.+.++.+|. .-|...+|+ +..+++++
T Consensus 96 Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~---------~~Iy~a~~s-p~~~nlfa 164 (311)
T KOG0277|consen 96 PIHKFK-EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN---------SCIYQAAFS-PHIPNLFA 164 (311)
T ss_pred chhHHH-hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCc---------cEEEEEecC-CCCCCeEE
Confidence 888887 7899999999998 56677888999999999999999999988875 779999995 34678999
Q ss_pred EEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecC-CCCEEEEEeCCCcEEEEEccCCe-EEeeeeCCCCCCeEEEEe
Q 014154 232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 232 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~i~~ 309 (430)
+++.|+.+++||++...+ ...+..|...|.|+.|+. +.+.|++|+.|+.|+.||+++-+ ++.++.+| .-.|+.+.|
T Consensus 165 s~Sgd~~l~lwdvr~~gk-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh-~~AVRkvk~ 242 (311)
T KOG0277|consen 165 SASGDGTLRLWDVRSPGK-FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH-GLAVRKVKF 242 (311)
T ss_pred EccCCceEEEEEecCCCc-eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC-ceEEEEEec
Confidence 999999999999998765 444899999999999986 55788999999999999999765 58889898 899999999
Q ss_pred cCCC-CeEEEEeCCCcEEEEECCCCce-eeEEEeeccccceEEeeecccccc--ccccCCCCceEecCC
Q 014154 310 HPTL-PIIASCGLDSYLRFWDIKTRQL-LSAVFLKQHLNEVVFDSAFADKEV--ANAAADAPMLEIQNG 374 (430)
Q Consensus 310 ~~~~-~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~--~~~~~~d~~i~~~~~ 374 (430)
||.. .+|++++.|-++||||...+.. +.+ ...| ...+..+.||+-.. +++.+.|+.+.||+.
T Consensus 243 Sph~~~lLaSasYDmT~riw~~~~~ds~~e~--~~~H-tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 243 SPHHASLLASASYDMTVRIWDPERQDSAIET--VDHH-TEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred CcchhhHhhhccccceEEecccccchhhhhh--hhcc-ceEEeccccccccCceeeecccccceeeecc
Confidence 9965 6899999999999999985543 333 3344 77789999998533 389999999999984
No 52
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-28 Score=201.62 Aligned_cols=289 Identities=15% Similarity=0.177 Sum_probs=222.1
Q ss_pred eeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccc
Q 014154 42 VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS 121 (430)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 121 (430)
.+.|..-.+. +.++.| +++|.+|++++.|.+|+|||..+++++.++... .-.+..+++....
T Consensus 7 ak~f~~~~~~--i~sl~f--s~~G~~litss~dDsl~LYd~~~g~~~~ti~sk--------kyG~~~~~Fth~~------ 68 (311)
T KOG1446|consen 7 AKVFRETNGK--INSLDF--SDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK--------KYGVDLACFTHHS------ 68 (311)
T ss_pred ccccccCCCc--eeEEEe--cCCCCEEEEecCCCeEEEEEcCCCceeeEeecc--------cccccEEEEecCC------
Confidence 3445544444 556666 778999999999999999999999998887652 1133334444433
Q ss_pred cCceEEEEcc--CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154 122 RSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 122 ~~~~~~~~~~--~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 199 (430)
..++.++. |.+++..++... ..++.|. .|...|..++.+|-++.+++++.|++|++||++..++...
T Consensus 69 --~~~i~sStk~d~tIryLsl~dN--------kylRYF~-GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~ 137 (311)
T KOG1446|consen 69 --NTVIHSSTKEDDTIRYLSLHDN--------KYLRYFP-GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL 137 (311)
T ss_pred --ceEEEccCCCCCceEEEEeecC--------ceEEEcC-CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE
Confidence 36666666 556777766533 3677776 8999999999999999999999999999999997666555
Q ss_pred eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC-CcceEEEeec---CCCeEEEEecCCCCEEEE
Q 014154 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-RRPVMSFDFR---ETPIKAVAEEPDSFNIYI 275 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~---~~~i~~~~~sp~~~~l~~ 275 (430)
+... .-..++| .|.|-++|++.....|++||++.. +.|..++... ....+.+.|||||++|+.
T Consensus 138 l~~~-----------~~pi~Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl 204 (311)
T KOG1446|consen 138 LNLS-----------GRPIAAF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL 204 (311)
T ss_pred EecC-----------CCcceeE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEE
Confidence 4442 2345688 899999999988889999999975 4466666544 567899999999999999
Q ss_pred EeCCCcEEEEEccCCeEEeeeeCCCCCC--eEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeee
Q 014154 276 GNGSGDLASVDIRTGKLLGCFIGKCSGS--IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSA 353 (430)
Q Consensus 276 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~--v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 353 (430)
++..+.+++.|.-+|..+..+.++.... -....|.||++++++|+.||+|.+|+++++..+.. +.+.....+.++.
T Consensus 205 sT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~--~~~~~~~~~~~~~ 282 (311)
T KOG1446|consen 205 STNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAV--LRGPNGGPVSCVR 282 (311)
T ss_pred EeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeE--ecCCCCCCccccc
Confidence 9999999999999999999888762221 24678999999999999999999999999999998 5554355578999
Q ss_pred ccccccccccCCCCceEecCCC
Q 014154 354 FADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 354 ~s~~g~~~~~~~d~~i~~~~~~ 375 (430)
|+|.-.+ .++.+..+.+|-..
T Consensus 283 fnP~~~m-f~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 283 FNPRYAM-FVSASSNLVFWLPD 303 (311)
T ss_pred cCCceee-eeecCceEEEEecc
Confidence 9997665 33344567777544
No 53
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=5.1e-30 Score=231.01 Aligned_cols=354 Identities=14% Similarity=0.134 Sum_probs=253.7
Q ss_pred CCcccCCCCCCCcceeeecCCCceEEEEccCCCC-Ccceeeeec--------------CCCC--CCcceeeeeecCCCCC
Q 014154 3 RTTTLECPGCPPLRALTFDSLGLIKVIEARGEHG-GVPKVVERW--------------GDPH--SSNCVLAASIDDSQND 65 (430)
Q Consensus 3 ~~~~~~~~~~~~~~l~t~~~dg~i~vw~~~~~~~-~~~~~~~~~--------------~~~~--~~~~~~~~~~~~~p~g 65 (430)
||+..+|.....-.+++|+.+|.|++++..+..- +..+.-+.+ .+.. .-.-++++.| .|..
T Consensus 259 RTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~F--det~ 336 (1080)
T KOG1408|consen 259 RTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQF--DETT 336 (1080)
T ss_pred hccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEe--cCCC
Confidence 4666667766777788999999999999876420 000010111 1111 1122567777 6667
Q ss_pred ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeec--Cccccc-ccCceEEEEccCCeeEEEEeee
Q 014154 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKR--QREESS-SRSRTLLTCTTKGKASMRSIEV 142 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~-~~~~~~~~~~~~g~~~v~~~~~ 142 (430)
+.|.+...|..|.|||+.+-..+..... +.-|...|..+..++- ...... -..+.+++|+.|+++++|++++
T Consensus 337 ~klscVYndhSlYvWDvrD~~kvgk~~s-----~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ 411 (1080)
T KOG1408|consen 337 DKLSCVYNDHSLYVWDVRDVNKVGKCSS-----MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAF 411 (1080)
T ss_pred ceEEEEEcCceEEEEeccccccccceee-----eeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccc
Confidence 7899999999999999986544433222 0011112222222221 000000 0236799999999999999988
Q ss_pred cCc--------cc------cCCCcceE--------Eeee------cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 014154 143 TKV--------SA------ESSCSTVK--------SWNV------CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC 194 (430)
Q Consensus 143 ~~~--------~~------~~~~~~i~--------~~~~------~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 194 (430)
... .+ ...|+... +++. .....+.+++++|++++|++|..-|++++|++...
T Consensus 412 ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l 491 (1080)
T KOG1408|consen 412 CTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL 491 (1080)
T ss_pred ccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh
Confidence 332 00 00111111 1110 01245899999999999999999999999999988
Q ss_pred eeeEeeCCCCCCCCCCcCCcceeEEEEeecC--CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEe------
Q 014154 195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSID--DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAE------ 266 (430)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~------ 266 (430)
+.+..+..|. ..|.|+.|. .| ...+|++++.|..|+|||......+++++.+|...|+++.|
T Consensus 492 ~~~~~~eAHe---------sEilcLeyS-~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln 561 (1080)
T KOG1408|consen 492 EYTCFMEAHE---------SEILCLEYS-FPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLN 561 (1080)
T ss_pred hhhhheeccc---------ceeEEEeec-CchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCc
Confidence 7777777776 779999995 23 23589999999999999998766566677777666666555
Q ss_pred -------------------------------------------cCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC--C
Q 014154 267 -------------------------------------------EPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC--S 301 (430)
Q Consensus 267 -------------------------------------------sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~ 301 (430)
.|..+++++++.|..|+|||+.+++....|++.+ .
T Consensus 562 ~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~e 641 (1080)
T KOG1408|consen 562 RKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHE 641 (1080)
T ss_pred eEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCC
Confidence 3345678899999999999999999999998642 5
Q ss_pred CCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 302 ~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
+....+...|.|-||++...|.++.++|..+|+++.. .-|| +..|+.+.|.+|-+. ++++.||.|.||..+.
T Consensus 642 G~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~--m~GH-sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 642 GDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ--MTGH-SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred CceEEEEECCCccEEEEeecCCceEEEEeccchhhhh--hcCc-chheeeeeecccchhheeecCCceEEEEECch
Confidence 6778899999999999999999999999999999998 6688 777899999999998 9999999999999864
No 54
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.8e-30 Score=218.66 Aligned_cols=274 Identities=13% Similarity=0.102 Sum_probs=220.5
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..|++++.|.+..+|.+... .-.++..++.+|..+|. .+.| +||.+||++++.+..+.+||+.+|.....+..-
T Consensus 237 kyLAsaSkD~Taiiw~v~~d--~~~kl~~tlvgh~~~V~--yi~w--SPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~ 310 (519)
T KOG0293|consen 237 KYLASASKDSTAIIWIVVYD--VHFKLKKTLVGHSQPVS--YIMW--SPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG 310 (519)
T ss_pred eeEeeccCCceEEEEEEecC--cceeeeeeeecccCceE--EEEE--CCCCCeEEecCchHheeeccCCcchhhhhcccC
Confidence 67999999999999998764 22567889999999954 5555 777789999999999999999999987776531
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
....+.+..|.+.. ..+++|+.|+.+..|++... .+.-|.-.....|.++++.++|
T Consensus 311 -------~~~S~~sc~W~pDg--------~~~V~Gs~dr~i~~wdlDgn---------~~~~W~gvr~~~v~dlait~Dg 366 (519)
T KOG0293|consen 311 -------LGFSVSSCAWCPDG--------FRFVTGSPDRTIIMWDLDGN---------ILGNWEGVRDPKVHDLAITYDG 366 (519)
T ss_pred -------cCCCcceeEEccCC--------ceeEecCCCCcEEEecCCcc---------hhhcccccccceeEEEEEcCCC
Confidence 12344555555544 48999999999999997533 4556765555779999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE
Q 014154 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 254 (430)
+++++.+.|..|++|+.++......+..+ ..|++... +.++.++++--.+..+++||+.. ...++.+
T Consensus 367 k~vl~v~~d~~i~l~~~e~~~dr~lise~----------~~its~~i--S~d~k~~LvnL~~qei~LWDl~e-~~lv~kY 433 (519)
T KOG0293|consen 367 KYVLLVTVDKKIRLYNREARVDRGLISEE----------QPITSFSI--SKDGKLALVNLQDQEIHLWDLEE-NKLVRKY 433 (519)
T ss_pred cEEEEEecccceeeechhhhhhhcccccc----------CceeEEEE--cCCCcEEEEEcccCeeEEeecch-hhHHHHh
Confidence 99999999999999999875544333332 56888888 89999999999999999999996 4457788
Q ss_pred eecCCC--eEEEEec-CCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEEEEC
Q 014154 255 DFRETP--IKAVAEE-PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDI 330 (430)
Q Consensus 255 ~~~~~~--i~~~~~s-p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~ 330 (430)
.+|... +..-+|- .+..++++|++|+.|+||+..+++++.++.|| ...|++++|+|.. .++|+||+||+||||-.
T Consensus 434 ~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH-s~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 434 FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGH-SKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred hcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCC-cceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 888643 2223343 35589999999999999999999999999999 8999999999966 57899999999999987
Q ss_pred CC
Q 014154 331 KT 332 (430)
Q Consensus 331 ~~ 332 (430)
..
T Consensus 513 ~~ 514 (519)
T KOG0293|consen 513 SD 514 (519)
T ss_pred Cc
Confidence 53
No 55
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=3.5e-29 Score=229.38 Aligned_cols=337 Identities=15% Similarity=0.167 Sum_probs=251.1
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec-
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN- 93 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~- 93 (430)
.+++.|+.+|.+.+|+++++ +++.+|.++...| .++.. +|--+.+|.|..+|+|.|+++..++.+.+|+.
T Consensus 173 NKIvvGs~~G~lql~Nvrt~-----K~v~~f~~~~s~I--T~ieq--sPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTG-----KVVYTFQEFFSRI--TAIEQ--SPALDVVAIGLENGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred eeEEEeecCCcEEEEEeccC-----cEEEEecccccce--eEecc--CCcceEEEEeccCceEEEEEcccCcEEEEEEcc
Confidence 68999999999999999999 9999999988764 44444 66667899999999999999999999999876
Q ss_pred ---cCCCCCCCCCCceE-------EEEEeecCcccc---------c--------ccCceEEEEccCCeeEEEEeeecCc-
Q 014154 94 ---AGDSGAQPEDDGIV-------GLHLFKRQREES---------S--------SRSRTLLTCTTKGKASMRSIEVTKV- 145 (430)
Q Consensus 94 ---~~~~~~~~~~~~i~-------~~~~~~~~~~~~---------~--------~~~~~~~~~~~~g~~~v~~~~~~~~- 145 (430)
+..+.|.-...++. .+.+|+.+.... + .....+++++.|..+++|-.+....
T Consensus 244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~ 323 (910)
T KOG1539|consen 244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV 323 (910)
T ss_pred ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc
Confidence 22333332222221 244554433110 0 0112455556666666665441000
Q ss_pred ---------------------------cccCCCcceE-------------------------------------------
Q 014154 146 ---------------------------SAESSCSTVK------------------------------------------- 155 (430)
Q Consensus 146 ---------------------------~~~~~~~~i~------------------------------------------- 155 (430)
.+.+.|++.+
T Consensus 324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~ 403 (910)
T KOG1539|consen 324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF 403 (910)
T ss_pred chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence 1111222111
Q ss_pred ----------------------EeeecCC----------------CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 014154 156 ----------------------SWNVCAS----------------GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI 197 (430)
Q Consensus 156 ----------------------~~~~~~~----------------~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 197 (430)
.|+.... ..+.+++.++.|++.+.|...|.|-+|++.+|...
T Consensus 404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r 483 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR 483 (910)
T ss_pred ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee
Confidence 1211110 24778889999999999999999999999998877
Q ss_pred EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe
Q 014154 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (430)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 277 (430)
..+... ..|...|+.++. ..-++.+++++.+|.+.+||+.... +...+.. ...+.++.++.....++++.
T Consensus 484 ~sf~~~------~ah~~~V~gla~--D~~n~~~vsa~~~Gilkfw~f~~k~-l~~~l~l-~~~~~~iv~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 484 KSFGDS------PAHKGEVTGLAV--DGTNRLLVSAGADGILKFWDFKKKV-LKKSLRL-GSSITGIVYHRVSDLLAIAL 553 (910)
T ss_pred cccccC------ccccCceeEEEe--cCCCceEEEccCcceEEEEecCCcc-eeeeecc-CCCcceeeeeehhhhhhhhc
Confidence 776311 113377999999 6667889999999999999999733 4555553 35788899998888999999
Q ss_pred CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccc
Q 014154 278 GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK 357 (430)
Q Consensus 278 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 357 (430)
.|-.|+++|..+.+.++.|.+| ...|++++|||||++|++++.|++||+||+.++.++..+. .+..+.++.|+|+
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh-~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~----vd~~~~sls~SPn 628 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGH-GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL----VDSPCTSLSFSPN 628 (910)
T ss_pred CceeEEEEEchhhhhhHHhhcc-ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe----cCCcceeeEECCC
Confidence 9999999999999999999999 9999999999999999999999999999999999999863 3555789999999
Q ss_pred ccc-cccCCC-CceEecCCC
Q 014154 358 EVA-NAAADA-PMLEIQNGN 375 (430)
Q Consensus 358 g~~-~~~~~d-~~i~~~~~~ 375 (430)
|.+ +++..| .-|++|...
T Consensus 629 gD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 629 GDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred CCEEEEEEecCceEEEEEch
Confidence 999 666655 788888654
No 56
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=7.8e-30 Score=204.29 Aligned_cols=286 Identities=15% Similarity=0.204 Sum_probs=230.6
Q ss_pred cCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCc
Q 014154 45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR 124 (430)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 124 (430)
+.+|+.+++-+.+ +.+|++|.+++.|.++.||-..+|+.+.++.+| .+.|-++.+-... .
T Consensus 6 l~GHERplTqiKy----N~eGDLlFscaKD~~~~vw~s~nGerlGty~GH--------tGavW~~Did~~s--------~ 65 (327)
T KOG0643|consen 6 LQGHERPLTQIKY----NREGDLLFSCAKDSTPTVWYSLNGERLGTYDGH--------TGAVWCCDIDWDS--------K 65 (327)
T ss_pred cccCccccceEEe----cCCCcEEEEecCCCCceEEEecCCceeeeecCC--------CceEEEEEecCCc--------c
Confidence 5679999665555 447889999999999999999899999998875 3466655544333 4
Q ss_pred eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeC-----CCeEEEEECCC------
Q 014154 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-----GVEVNVWDLDK------ 193 (430)
Q Consensus 125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~------ 193 (430)
.+++++.|.++++|++.... .+..|.. +..|..+.|++++++++.... .+.|.++|++.
T Consensus 66 ~liTGSAD~t~kLWDv~tGk--------~la~~k~--~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~ 135 (327)
T KOG0643|consen 66 HLITGSADQTAKLWDVETGK--------QLATWKT--NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDID 135 (327)
T ss_pred eeeeccccceeEEEEcCCCc--------EEEEeec--CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhc
Confidence 89999999999999998665 5666654 688999999999999887765 35699999973
Q ss_pred -CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCE
Q 014154 194 -CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFN 272 (430)
Q Consensus 194 -~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~ 272 (430)
.++...+..+. +.++.+-| .|-+.+|++|..||.|.+||++++...+.....|+..|+.+.++||..+
T Consensus 136 s~ep~~kI~t~~---------skit~a~W--g~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~ 204 (327)
T KOG0643|consen 136 SEEPYLKIPTPD---------SKITSALW--GPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTY 204 (327)
T ss_pred ccCceEEecCCc---------cceeeeee--cccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcce
Confidence 33455555443 66888999 8999999999999999999999988778888889999999999999999
Q ss_pred EEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEE--EECCCC------------ceeeE
Q 014154 273 IYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF--WDIKTR------------QLLSA 338 (430)
Q Consensus 273 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~i--wd~~~~------------~~~~~ 338 (430)
+++++.|.+.++||.++.+++.++.. ..+|++.+++|...+++.|+.....-| =+.+.| +.+..
T Consensus 205 FiT~s~Dttakl~D~~tl~v~Kty~t--e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigr 282 (327)
T KOG0643|consen 205 FITGSKDTTAKLVDVRTLEVLKTYTT--ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGR 282 (327)
T ss_pred EEecccCccceeeeccceeeEEEeee--cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcc
Confidence 99999999999999999999999987 679999999998887777764332222 112223 23333
Q ss_pred EEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 339 VFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 339 ~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
.++|.+. |++++|+|+|+. ++|+.||.|++...+.
T Consensus 283 --vkGHFGP-INsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 283 --VKGHFGP-INSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred --ccccccC-cceeEECCCCcccccCCCCceEEEEEecc
Confidence 5688655 699999999998 9999999999987654
No 57
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=2.4e-29 Score=234.20 Aligned_cols=279 Identities=11% Similarity=0.164 Sum_probs=233.6
Q ss_pred cCCCCCCCcceeeecCCCceEEEEccCCCCCcceeeee-cCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCC
Q 014154 7 LECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVER-WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG 85 (430)
Q Consensus 7 ~~~~~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~ 85 (430)
+.|..-.+..+++++.+.+|++|+...+ .++.. +.+|.+.+..+++.. -+++|++|+.|.+++|||..+|
T Consensus 211 ~~~~q~~~~~~~~~s~~~tl~~~~~~~~-----~~i~~~l~GH~g~V~~l~~~~----~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 211 VLCLQLHDGFFKSGSDDSTLHLWDLNNG-----YLILTRLVGHFGGVWGLAFPS----GGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred hhhheeecCeEEecCCCceeEEeecccc-----eEEEeeccCCCCCceeEEEec----CCCEEEEEecCCcEEeEecCCC
Confidence 3344444678999999999999999987 66666 999999988777754 3468999999999999999999
Q ss_pred cccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCce
Q 014154 86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI 165 (430)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i 165 (430)
++...+.+|.. .+..+...+ ..+++++.|.+++||++.... .+.+.. .|...|
T Consensus 282 ~C~~~l~gh~s--------tv~~~~~~~----------~~~~sgs~D~tVkVW~v~n~~--------~l~l~~-~h~~~V 334 (537)
T KOG0274|consen 282 ECTHSLQGHTS--------SVRCLTIDP----------FLLVSGSRDNTVKVWDVTNGA--------CLNLLR-GHTGPV 334 (537)
T ss_pred cEEEEecCCCc--------eEEEEEccC----------ceEeeccCCceEEEEeccCcc--------eEEEec-cccccE
Confidence 99999987522 443333322 477788999999999997433 555555 388999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECC
Q 014154 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 245 (430)
.++.++ +.++++|+.|++|++||+.+++++..+.+|. .+|.++.+ .+. ..+++|+.|++|++||++
T Consensus 335 ~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~---------~~V~sl~~--~~~-~~~~Sgs~D~~IkvWdl~ 400 (537)
T KOG0274|consen 335 NCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT---------GRVYSLIV--DSE-NRLLSGSLDTTIKVWDLR 400 (537)
T ss_pred EEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCc---------ceEEEEEe--cCc-ceEEeeeeccceEeecCC
Confidence 999997 8999999999999999999999999999976 88999988 332 899999999999999999
Q ss_pred CCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcE
Q 014154 246 AQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYL 325 (430)
Q Consensus 246 ~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i 325 (430)
+...++..+.+|.+-+..+.+ .+++|++++.|++|++||..+++++..+.+++...|..+++. ...+++++.||.+
T Consensus 401 ~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~ 476 (537)
T KOG0274|consen 401 TKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSV 476 (537)
T ss_pred chhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCee
Confidence 973568999999988877665 467999999999999999999999999998436888888885 4678899999999
Q ss_pred EEEECCCCceeeEE
Q 014154 326 RFWDIKTRQLLSAV 339 (430)
Q Consensus 326 ~iwd~~~~~~~~~~ 339 (430)
++||++++++...+
T Consensus 477 ~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 477 KLWDLRSGTLIRTL 490 (537)
T ss_pred EEEecccCchhhhh
Confidence 99999999988874
No 58
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.9e-29 Score=230.29 Aligned_cols=290 Identities=14% Similarity=0.156 Sum_probs=228.8
Q ss_pred CcccCCCCCCCc--ceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEec
Q 014154 4 TTTLECPGCPPL--RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILN 81 (430)
Q Consensus 4 ~~~~~~~~~~~~--~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd 81 (430)
+..+......|. .++++--.|.|.+||.+-+ .++.+|.+|+++|+.+. | +|+++++++|+.|-.|+||+
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~-----tli~rFdeHdGpVRgv~--F--H~~qplFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG-----TLIDRFDEHDGPVRGVD--F--HPTQPLFVSGGDDYKIKVWN 79 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhh-----hHHhhhhccCCccceee--e--cCCCCeEEecCCccEEEEEe
Confidence 344555566663 4788889999999999988 89999999999976544 4 88999999999999999999
Q ss_pred CCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC
Q 014154 82 PLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA 161 (430)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~ 161 (430)
+.+.+++.++.+| .+.+..+.+.+.. ..+++++.|.+++||+..... .|.+.. .|
T Consensus 80 Yk~rrclftL~GH--------lDYVRt~~FHhey--------PWIlSASDDQTIrIWNwqsr~--------~iavlt-GH 134 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGH--------LDYVRTVFFHHEY--------PWILSASDDQTIRIWNWQSRK--------CIAVLT-GH 134 (1202)
T ss_pred cccceehhhhccc--------cceeEEeeccCCC--------ceEEEccCCCeEEEEeccCCc--------eEEEEe-cC
Confidence 9999999888775 3466655554443 499999999999999976443 555554 78
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCC--------CCC--CCC----------CCcCCcceeEEEE
Q 014154 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP--------PPK--NSL----------GIFTPTWFTSAAF 221 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--------~~~--~~~----------~~~~~~~v~~~~~ 221 (430)
...|.|..|+|...++++++.|.+|++||+..-+......+ .+. .-+ --.|...|+-++|
T Consensus 135 nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf 214 (1202)
T KOG0292|consen 135 NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF 214 (1202)
T ss_pred ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe
Confidence 89999999999999999999999999999964221111000 000 000 0123356888899
Q ss_pred eecCCCCEEEEEeCCCcEEEEECCCCCc-ceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC
Q 014154 222 LSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC 300 (430)
Q Consensus 222 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 300 (430)
+|.-.+|++|+.|..|++|.+...+. .+.+..+|...|.++-|+|...+|++.++|++|++||+...+.+++|+..
T Consensus 215 --hpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre- 291 (1202)
T KOG0292|consen 215 --HPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE- 291 (1202)
T ss_pred --cCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeecc-
Confidence 78889999999999999999986432 25567889999999999999999999999999999999999999999876
Q ss_pred CCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154 301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 301 ~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
..+.+.++-+|..++++.| .|+-+.||.++
T Consensus 292 ndRFW~laahP~lNLfAAg-HDsGm~VFkle 321 (1202)
T KOG0292|consen 292 NDRFWILAAHPELNLFAAG-HDSGMIVFKLE 321 (1202)
T ss_pred CCeEEEEEecCCcceeeee-cCCceEEEEEc
Confidence 6789999999999877766 45556666665
No 59
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-29 Score=199.05 Aligned_cols=265 Identities=14% Similarity=0.114 Sum_probs=219.4
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..++|++.|.+||+|++..+ .+++++.+|...|.-.+.++|++ .+++++.|..|.+||+.+|+..+.+.+|
T Consensus 30 nY~ltcGsdrtvrLWNp~rg-----~liktYsghG~EVlD~~~s~Dns----kf~s~GgDk~v~vwDV~TGkv~Rr~rgH 100 (307)
T KOG0316|consen 30 NYCLTCGSDRTVRLWNPLRG-----ALIKTYSGHGHEVLDAALSSDNS----KFASCGGDKAVQVWDVNTGKVDRRFRGH 100 (307)
T ss_pred CEEEEcCCCceEEeeccccc-----ceeeeecCCCceeeecccccccc----ccccCCCCceEEEEEcccCeeeeecccc
Confidence 56889999999999999998 89999999999977777777555 6999999999999999999999998875
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
...+..+.+.... ..+++++.|..+++|+.... ...+|++++. ....|.++.++ +
T Consensus 101 --------~aqVNtV~fNees--------SVv~SgsfD~s~r~wDCRS~------s~ePiQilde-a~D~V~Si~v~--~ 155 (307)
T KOG0316|consen 101 --------LAQVNTVRFNEES--------SVVASGSFDSSVRLWDCRSR------SFEPIQILDE-AKDGVSSIDVA--E 155 (307)
T ss_pred --------cceeeEEEecCcc--------eEEEeccccceeEEEEcccC------CCCccchhhh-hcCceeEEEec--c
Confidence 3477766665544 48999999999999997643 2347777773 35667777774 6
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE
Q 014154 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 254 (430)
..|++|+.||+++.||++.|+....+-+ .+|+++.| +++++..+.++.|+++++.|-.+++ .+..+
T Consensus 156 heIvaGS~DGtvRtydiR~G~l~sDy~g-----------~pit~vs~--s~d~nc~La~~l~stlrLlDk~tGk-lL~sY 221 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTLSSDYFG-----------HPITSVSF--SKDGNCSLASSLDSTLRLLDKETGK-LLKSY 221 (307)
T ss_pred cEEEeeccCCcEEEEEeecceeehhhcC-----------CcceeEEe--cCCCCEEEEeeccceeeecccchhH-HHHHh
Confidence 7899999999999999999888766655 56999999 8999999999999999999999976 57888
Q ss_pred eecCCCeE--EEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCC-eEEEEecCCCCeEEEEeCCCcEEEEE
Q 014154 255 DFRETPIK--AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS-IRSIARHPTLPIIASCGLDSYLRFWD 329 (430)
Q Consensus 255 ~~~~~~i~--~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~s~~~dg~i~iwd 329 (430)
++|...-. ..+++.....+++|++||.|++||+.....+..+..+ ... |..+.++|....|+++.. +.+..|-
T Consensus 222 kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~-~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 222 KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVV-STVIVTDLSCHPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred cccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccC-CceeEEeeecccCccceeEecC-Cceecee
Confidence 88865332 3456667789999999999999999999999999887 555 899999999888888754 4466664
No 60
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.4e-28 Score=246.81 Aligned_cols=274 Identities=14% Similarity=0.145 Sum_probs=208.2
Q ss_pred cceeeecCCCceEEEEccCCC---CCcceeeeecCCCCCCcceeeeeecCCC-CCceeEEeecCCeEEEecCCCCcccce
Q 014154 15 LRALTFDSLGLIKVIEARGEH---GGVPKVVERWGDPHSSNCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLNGDLRVA 90 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~g~~l~~g~~dg~i~iwd~~~~~~~~~ 90 (430)
-.++||+.||.|+||+..... .........+.. ... +..++| +| ++.+||+++.||+|+|||+.+++.+..
T Consensus 496 ~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~--v~~l~~--~~~~~~~las~~~Dg~v~lWd~~~~~~~~~ 570 (793)
T PLN00181 496 EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSK--LSGICW--NSYIKSQVASSNFEGVVQVWDVARSQLVTE 570 (793)
T ss_pred CEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCc--eeeEEe--ccCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 458899999999999986420 000011122332 233 334444 32 467899999999999999998887777
Q ss_pred eeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEE
Q 014154 91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (430)
Q Consensus 91 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~ 170 (430)
+.+ |.+.+.++.+.+... ..+++++.|+.+++|++.... .+..+. +...+.++.|
T Consensus 571 ~~~--------H~~~V~~l~~~p~~~-------~~L~Sgs~Dg~v~iWd~~~~~--------~~~~~~--~~~~v~~v~~ 625 (793)
T PLN00181 571 MKE--------HEKRVWSIDYSSADP-------TLLASGSDDGSVKLWSINQGV--------SIGTIK--TKANICCVQF 625 (793)
T ss_pred ecC--------CCCCEEEEEEcCCCC-------CEEEEEcCCCEEEEEECCCCc--------EEEEEe--cCCCeEEEEE
Confidence 654 345788888865443 589999999999999986432 333333 3467889999
Q ss_pred c-CCCCEEEEEeCCCeEEEEECCCCe-eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC-
Q 014154 171 D-ISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ- 247 (430)
Q Consensus 171 ~-~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~- 247 (430)
+ +++.+|++|+.||.|++||+++.. .+..+..|. ..|.++.| . ++.+|++++.|++|++||++..
T Consensus 626 ~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~---------~~V~~v~f--~-~~~~lvs~s~D~~ikiWd~~~~~ 693 (793)
T PLN00181 626 PSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHS---------KTVSYVRF--V-DSSTLVSSSTDNTLKLWDLSMSI 693 (793)
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCC---------CCEEEEEE--e-CCCEEEEEECCCEEEEEeCCCCc
Confidence 5 579999999999999999998754 344444443 67999999 4 6789999999999999999743
Q ss_pred ----CcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeee------------CCCCCCeEEEEecC
Q 014154 248 ----RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI------------GKCSGSIRSIARHP 311 (430)
Q Consensus 248 ----~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------------~~~~~~v~~i~~~~ 311 (430)
..++..+.+|...+.+++|+|++.+|++|+.|+.|++|+......+..+. .++...|.+++|+|
T Consensus 694 ~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 694 SGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG 773 (793)
T ss_pred cccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence 23577899999999999999999999999999999999987665432221 11245699999999
Q ss_pred CCCeEEEEeCCCcEEEEEC
Q 014154 312 TLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 312 ~~~~l~s~~~dg~i~iwd~ 330 (430)
++.+|++|+.||.|+||++
T Consensus 774 ~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 774 QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCeEEEecCCCcEEEEec
Confidence 9999999999999999986
No 61
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4.7e-29 Score=233.04 Aligned_cols=275 Identities=16% Similarity=0.230 Sum_probs=226.2
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecC-CCCcccceeec
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP-LNGDLRVAISN 93 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~-~~~~~~~~~~~ 93 (430)
..+++++.++.+++|+...... .+...+.+|...|. .++| +|+|.++++++.|++|+|||+ ..+..+.++.+
T Consensus 172 ~~l~~~~~~~~i~~~~~~~~~~---~~~~~l~~h~~~v~--~~~f--s~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g 244 (456)
T KOG0266|consen 172 RALAAASSDGLIRIWKLEGIKS---NLLRELSGHTRGVS--DVAF--SPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG 244 (456)
T ss_pred CeEEEccCCCcEEEeecccccc---hhhcccccccccee--eeEE--CCCCcEEEEecCCceEEEeeccCCCeEEEEecC
Confidence 4588889999999999976511 25566677888854 5555 678889999999999999999 55678888776
Q ss_pred cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC
Q 014154 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~ 173 (430)
| ...+.++.+.+... .+++++.|++++||++.... .++.+. .|...|.+++|+++
T Consensus 245 H--------~~~v~~~~f~p~g~--------~i~Sgs~D~tvriWd~~~~~--------~~~~l~-~hs~~is~~~f~~d 299 (456)
T KOG0266|consen 245 H--------STYVTSVAFSPDGN--------LLVSGSDDGTVRIWDVRTGE--------CVRKLK-GHSDGISGLAFSPD 299 (456)
T ss_pred C--------CCceEEEEecCCCC--------EEEEecCCCcEEEEeccCCe--------EEEeee-ccCCceEEEEECCC
Confidence 5 45777777776553 99999999999999987532 666666 67889999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCe--eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcce
Q 014154 174 EKFSLFGGKGVEVNVWDLDKCE--KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV 251 (430)
Q Consensus 174 ~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 251 (430)
+++|++++.|+.|++||+.++. +...+..+... ..++++.| +|++.+|++++.|+.+++||+..+.. .
T Consensus 300 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-------~~~~~~~f--sp~~~~ll~~~~d~~~~~w~l~~~~~-~ 369 (456)
T KOG0266|consen 300 GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS-------APVTSVQF--SPNGKYLLSASLDRTLKLWDLRSGKS-V 369 (456)
T ss_pred CCEEEEcCCCccEEEEECCCCceeeeecccCCCCC-------CceeEEEE--CCCCcEEEEecCCCeEEEEEccCCcc-e
Confidence 9999999999999999999988 44555544311 15899999 89999999999999999999998664 6
Q ss_pred EEEeecCCC---eEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe--CCCcEE
Q 014154 252 MSFDFRETP---IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG--LDSYLR 326 (430)
Q Consensus 252 ~~~~~~~~~---i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~--~dg~i~ 326 (430)
..+.+|... +.+..+++.+.++++|+.|+.|++||+.++..+..+.+|....+..+.++|...++++++ .|+.++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~ 449 (456)
T KOG0266|consen 370 GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIR 449 (456)
T ss_pred eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEE
Confidence 777777664 344455789999999999999999999999999999987456789999999999999998 789999
Q ss_pred EEECC
Q 014154 327 FWDIK 331 (430)
Q Consensus 327 iwd~~ 331 (430)
+|...
T Consensus 450 ~w~~~ 454 (456)
T KOG0266|consen 450 LWKYD 454 (456)
T ss_pred EecCC
Confidence 99754
No 62
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.6e-30 Score=234.13 Aligned_cols=306 Identities=18% Similarity=0.184 Sum_probs=208.3
Q ss_pred eeecC-CCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec-cCCCCCCC-CCCceEEEEEeecCccc
Q 014154 42 VERWG-DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN-AGDSGAQP-EDDGIVGLHLFKRQREE 118 (430)
Q Consensus 42 ~~~~~-~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~ 118 (430)
.+.+. +|.+. |.++.| ++||+|||+|+.||.|+||.+........-.. ..+..+.. ....+..+..-. ....
T Consensus 259 ~Qe~~~ah~ga--Iw~mKF--S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~-~~~~ 333 (712)
T KOG0283|consen 259 VQEISNAHKGA--IWAMKF--SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSE-EKIS 333 (712)
T ss_pred eeccccccCCc--EEEEEe--CCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccc-cccc
Confidence 34555 68888 566666 88999999999999999999865332111110 00000000 000000000000 0000
Q ss_pred ccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 014154 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW 198 (430)
Q Consensus 119 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~ 198 (430)
......-.+..... +.+...+..-.+.+++.|. .|.+.|..+.|+ ..++|++++.|.+|+||++...+++.
T Consensus 334 --~~~s~~~~~~~s~~-----~~~p~~~f~f~ekP~~ef~-GHt~DILDlSWS-Kn~fLLSSSMDKTVRLWh~~~~~CL~ 404 (712)
T KOG0283|consen 334 --SRTSSSRKGSQSPC-----VLLPLKAFVFSEKPFCEFK-GHTADILDLSWS-KNNFLLSSSMDKTVRLWHPGRKECLK 404 (712)
T ss_pred --ccccccccccCCcc-----ccCCCccccccccchhhhh-ccchhheecccc-cCCeeEeccccccEEeecCCCcceee
Confidence 00000000011111 1111112223344666665 788999999999 46689999999999999999988888
Q ss_pred eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC
Q 014154 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG 278 (430)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 278 (430)
.+.. .+.|+|++|+ +-|.++|++|+-|+.|+||++...+ +.....-..-|++++|.|||++.++|+.
T Consensus 405 ~F~H----------ndfVTcVaFn-PvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdGk~avIGt~ 471 (712)
T KOG0283|consen 405 VFSH----------NDFVTCVAFN-PVDDRYFISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDGKGAVIGTF 471 (712)
T ss_pred EEec----------CCeeEEEEec-ccCCCcEeecccccceEEeecCcCe--eEeehhhhhhheeEEeccCCceEEEEEe
Confidence 7764 3889999996 4578899999999999999998733 4444444479999999999999999999
Q ss_pred CCcEEEEEccCCeEEeeeeCC-------CCCCeEEEEecCCC-CeEEEEeCCCcEEEEECCCCceeeEEEeecccc-ceE
Q 014154 279 SGDLASVDIRTGKLLGCFIGK-------CSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLN-EVV 349 (430)
Q Consensus 279 d~~i~iwd~~~~~~~~~~~~~-------~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~v 349 (430)
+|.+++|++...+....+.-+ ....|+++.|.|.. ..|++.+.|..|||||.++..++.. ++|... ..-
T Consensus 472 ~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~K--fKG~~n~~SQ 549 (712)
T KOG0283|consen 472 NGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHK--FKGFRNTSSQ 549 (712)
T ss_pred ccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhh--hcccccCCcc
Confidence 999999999887765554321 02279999999855 3567778999999999988888887 444422 223
Q ss_pred Eeeeccccccc-cccCCCCceEecCCCC
Q 014154 350 FDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 350 ~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
....|+.||++ +++++|..|++|+.+.
T Consensus 550 ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 550 ISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred eeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 67899999999 9999999999999744
No 63
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.5e-28 Score=197.29 Aligned_cols=244 Identities=11% Similarity=0.144 Sum_probs=198.8
Q ss_pred CCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEE
Q 014154 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG 180 (430)
Q Consensus 101 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~ 180 (430)
.+.+.+-.+.+.+... ..+++|+.+..+++|+...... -....+.+-.|...|.+++|+|.|++|+++
T Consensus 12 gh~~r~W~~awhp~~g-------~ilAscg~Dk~vriw~~~~~~s-----~~ck~vld~~hkrsVRsvAwsp~g~~La~a 79 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKG-------VILASCGTDKAVRIWSTSSGDS-----WTCKTVLDDGHKRSVRSVAWSPHGRYLASA 79 (312)
T ss_pred CCCCcEEEEEeccCCc-------eEEEeecCCceEEEEecCCCCc-----EEEEEeccccchheeeeeeecCCCcEEEEe
Confidence 3455666666655422 3688999999999998763110 112334444688999999999999999999
Q ss_pred eCCCeEEEEECCC--CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC--cceEEEee
Q 014154 181 GKGVEVNVWDLDK--CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--RPVMSFDF 256 (430)
Q Consensus 181 ~~d~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~ 256 (430)
+.|.++.||.-.. .+++..+.+|. ..|.+++| +++|++||+|+.|.+|-||...... .....++.
T Consensus 80 SFD~t~~Iw~k~~~efecv~~lEGHE---------nEVK~Vaw--s~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 80 SFDATVVIWKKEDGEFECVATLEGHE---------NEVKCVAW--SASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred eccceEEEeecCCCceeEEeeeeccc---------cceeEEEE--cCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 9999999998764 45677788876 77999999 8999999999999999999998433 35678899
Q ss_pred cCCCeEEEEecCCCCEEEEEeCCCcEEEEEcc---CCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCC
Q 014154 257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIR---TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 257 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~ 333 (430)
|...|..+.|+|...+|++++.|++|++|.-. .-.+++++.+| ...|.+++|+|.|..|++++.|++|+||-..+.
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~-~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~ 227 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGH-ENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD 227 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCc-cceEEEEEecCCCceEEEecCCcceEeeeeccC
Confidence 99999999999999999999999999999876 34688999998 789999999999999999999999999986521
Q ss_pred ceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154 334 QLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~ 376 (430)
+.+..+..++.++|. +|.+++++.|+.|++|....
T Consensus 228 -------~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 228 -------LSGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESD 262 (312)
T ss_pred -------cchhcccceEeeeec-ccceEeccCCCEEEEEEecC
Confidence 222224557899999 88889999999999997663
No 64
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.6e-30 Score=215.45 Aligned_cols=288 Identities=13% Similarity=0.148 Sum_probs=226.8
Q ss_pred eeeeecCCCCCCcceeeeeecCCCCC-ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccc
Q 014154 40 KVVERWGDPHSSNCVLAASIDDSQND-PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE 118 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 118 (430)
.++..+.+|.+.|.+++-.+ .. ..+|+|+.||.|+|||+.+..++..++.| .+.+.++.+-.
T Consensus 57 PFv~~L~gHrdGV~~lakhp----~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH--------~G~V~Gi~v~~----- 119 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHP----NKLSTVASGSCDGEVKIWNLSQRECIRTFKAH--------EGLVRGICVTQ----- 119 (433)
T ss_pred cchhhccccccccchhhcCc----chhhhhhccccCceEEEEehhhhhhhheeecc--------cCceeeEEecc-----
Confidence 46667788999988776644 32 46899999999999999988888887764 45677776654
Q ss_pred ccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 014154 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW 198 (430)
Q Consensus 119 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~ 198 (430)
..+++++.|.+++.|.+... .++.+.. ...+..+.-+..++.+++++.+ |.|||.....++.
T Consensus 120 -----~~~~tvgdDKtvK~wk~~~~---------p~~tilg--~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~ 181 (433)
T KOG0268|consen 120 -----TSFFTVGDDKTVKQWKIDGP---------PLHTILG--KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVS 181 (433)
T ss_pred -----cceEEecCCcceeeeeccCC---------cceeeec--cccccccccccccccccccCce--eeecccccCCccc
Confidence 37899999999999987642 3444432 3556667766677888888764 9999998777777
Q ss_pred eeCCCCCCCCCCcCCcceeEEEEeecCCC-CEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe
Q 014154 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (430)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 277 (430)
.+.-.. +.|.++.| +|.. ..|++|..|+.|.|||+++.. |+..+.. ...-+.|+|+|.+-.+++|+
T Consensus 182 smswG~---------Dti~svkf--NpvETsILas~~sDrsIvLyD~R~~~-Pl~KVi~-~mRTN~IswnPeafnF~~a~ 248 (433)
T KOG0268|consen 182 SMSWGA---------DSISSVKF--NPVETSILASCASDRSIVLYDLRQAS-PLKKVIL-TMRTNTICWNPEAFNFVAAN 248 (433)
T ss_pred eeecCC---------CceeEEec--CCCcchheeeeccCCceEEEecccCC-ccceeee-eccccceecCccccceeecc
Confidence 666543 66899999 5644 577888899999999999865 5554443 24567899999888889999
Q ss_pred CCCcEEEEEccCCe-EEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154 278 GSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 278 ~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~ 356 (430)
+|..++.||++..+ ++..+.+| .+.|.+++|||.|+-+++||.|.+|+||.++.+.....+.. ..=..|+++.||-
T Consensus 249 ED~nlY~~DmR~l~~p~~v~~dh-vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht--kRMq~V~~Vk~S~ 325 (433)
T KOG0268|consen 249 EDHNLYTYDMRNLSRPLNVHKDH-VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT--KRMQHVFCVKYSM 325 (433)
T ss_pred ccccceehhhhhhcccchhhccc-ceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH--hhhheeeEEEEec
Confidence 99999999999754 57888888 89999999999999999999999999999987766554311 1112379999999
Q ss_pred cccc-cccCCCCceEecCCCCCc
Q 014154 357 KEVA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 357 ~g~~-~~~~~d~~i~~~~~~~~~ 378 (430)
|.++ ++|++|+.|++|......
T Consensus 326 Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 326 DSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred cccEEEecCCCcceeeeecchhh
Confidence 9999 999999999999987643
No 65
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=3.7e-28 Score=202.86 Aligned_cols=292 Identities=16% Similarity=0.238 Sum_probs=235.0
Q ss_pred eeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccc
Q 014154 41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (430)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 120 (430)
-+..|..|..+ +.+++. +|+.+++|+|+.|..-.||++.+|.....+.+ |.+.++++.|....
T Consensus 56 S~~tF~~H~~s--vFavsl--~P~~~l~aTGGgDD~AflW~~~~ge~~~eltg--------HKDSVt~~~Fshdg----- 118 (399)
T KOG0296|consen 56 SLVTFDKHTDS--VFAVSL--HPNNNLVATGGGDDLAFLWDISTGEFAGELTG--------HKDSVTCCSFSHDG----- 118 (399)
T ss_pred ceeehhhcCCc--eEEEEe--CCCCceEEecCCCceEEEEEccCCcceeEecC--------CCCceEEEEEccCc-----
Confidence 45678889999 455555 67778999999999999999999997777766 45688877776554
Q ss_pred ccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeee-cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 121 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 199 (430)
.+++++..+|.+.||....... .|.+ .....|.=+.|+|.+..|+.|+.||.+.+|.+.+......
T Consensus 119 ---tlLATGdmsG~v~v~~~stg~~----------~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv 185 (399)
T KOG0296|consen 119 ---TLLATGDMSGKVLVFKVSTGGE----------QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKV 185 (399)
T ss_pred ---eEEEecCCCccEEEEEcccCce----------EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeE
Confidence 4899999999999999765432 2222 2346778899999999999999999999999998777777
Q ss_pred eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeec-CCCeEEEEecCCCCEEEEEeC
Q 014154 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNG 278 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~ 278 (430)
+.+|. .++++-.| .|+|++++++..||+|++|++.++. |+..+... .....++.++..+..++.|+.
T Consensus 186 ~~Gh~---------~~ct~G~f--~pdGKr~~tgy~dgti~~Wn~ktg~-p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~ 253 (399)
T KOG0296|consen 186 MSGHN---------SPCTCGEF--IPDGKRILTGYDDGTIIVWNPKTGQ-PLHKITQAEGLELPCISLNLAGSTLTKGNS 253 (399)
T ss_pred ecCCC---------CCcccccc--cCCCceEEEEecCceEEEEecCCCc-eeEEecccccCcCCccccccccceeEeccC
Confidence 77765 77899999 7899999999999999999999976 56666532 346788999999999999999
Q ss_pred CCcEEEEEccCCeEEeeeeC-------CCCCCeEEEEe---cCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccce
Q 014154 279 SGDLASVDIRTGKLLGCFIG-------KCSGSIRSIAR---HPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEV 348 (430)
Q Consensus 279 d~~i~iwd~~~~~~~~~~~~-------~~~~~v~~i~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 348 (430)
++.+++-+..+++.+....+ .+...+.++.+ +..-++.|+|+.||+|.|||+...++.+.+. | ...
T Consensus 254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~---h-e~~ 329 (399)
T KOG0296|consen 254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE---H-EDG 329 (399)
T ss_pred CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc---C-CCc
Confidence 99999999999998877763 12444555554 4456788999999999999999888777643 4 333
Q ss_pred EEeeeccccccccccCCCCceEecCCCCCc
Q 014154 349 VFDSAFADKEVANAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 349 v~~~~~s~~g~~~~~~~d~~i~~~~~~~~~ 378 (430)
|..+.|-++..+++++.+|.|+.||....+
T Consensus 330 V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~ 359 (399)
T KOG0296|consen 330 VTKLKWLNTDYLLTACANGKVRQWDARTGQ 359 (399)
T ss_pred eEEEEEcCcchheeeccCceEEeeeccccc
Confidence 799999994444999999999999998765
No 66
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.4e-29 Score=214.53 Aligned_cols=268 Identities=16% Similarity=0.227 Sum_probs=213.9
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
.+|+||+.|..|++|+...+. ..+..++.+..+++. ++.+ .+++.++++++.|+.+++|++.+.+...++.+|
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k---~~~~~tLaGs~g~it--~~d~--d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGH 260 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEK---SELISTLAGSLGNIT--SIDF--DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGH 260 (459)
T ss_pred chhhhcchhhhhhhhhcccch---hhhhhhhhccCCCcc--eeee--cCCCceEEeecCCCceeeeeccchhhhhhhccc
Confidence 679999999999999998851 236677777777744 4544 567788999999999999999888877776543
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
...|+++.|....
T Consensus 261 -------------------------------------------------------------------tdkVt~ak~~~~~ 273 (459)
T KOG0288|consen 261 -------------------------------------------------------------------TDKVTAAKFKLSH 273 (459)
T ss_pred -------------------------------------------------------------------ccceeeehhhccc
Confidence 2233333333333
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE
Q 014154 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 254 (430)
..+++|+.|.+|++||+....+..++... +.+..+.. ....+++|..|+.|++||.+... ++...
T Consensus 274 ~~vVsgs~DRtiK~WDl~k~~C~kt~l~~----------S~cnDI~~----~~~~~~SgH~DkkvRfwD~Rs~~-~~~sv 338 (459)
T KOG0288|consen 274 SRVVSGSADRTIKLWDLQKAYCSKTVLPG----------SQCNDIVC----SISDVISGHFDKKVRFWDIRSAD-KTRSV 338 (459)
T ss_pred cceeeccccchhhhhhhhhhheecccccc----------ccccceEe----cceeeeecccccceEEEeccCCc-eeeEe
Confidence 44888999999999999887776654432 44566666 25678999999999999999865 47777
Q ss_pred eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC---CCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154 255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK---CSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 255 ~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
..+ +.|+++..++++..|++++.|.++.++|+++.+....+... .....+.+.|||++.|+++||.||.|+||++.
T Consensus 339 ~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~ 417 (459)
T KOG0288|consen 339 PLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVF 417 (459)
T ss_pred ecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEcc
Confidence 776 49999999999999999999999999999999888777642 12357889999999999999999999999999
Q ss_pred CCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecC
Q 014154 332 TRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQN 373 (430)
Q Consensus 332 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~ 373 (430)
++++...+...+. ...|++++|+|.|.. ++++.++.+.+|.
T Consensus 418 tgKlE~~l~~s~s-~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 418 TGKLEKVLSLSTS-NAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CceEEEEeccCCC-CcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999988533322 336899999999999 9999999999984
No 67
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8e-28 Score=197.18 Aligned_cols=273 Identities=15% Similarity=0.212 Sum_probs=213.2
Q ss_pred cceeeecCCCceEEEEccCCCC-----Cccee--eeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc
Q 014154 15 LRALTFDSLGLIKVIEARGEHG-----GVPKV--VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL 87 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~ 87 (430)
|++++|+....|.-+++...+. ..+.+ +..+..|.++++++|++. +|+|+|+.|-+|+|||+.....
T Consensus 2 m~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~------~~~aSGssDetI~IYDm~k~~q 75 (362)
T KOG0294|consen 2 MEIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSG------PYVASGSSDETIHIYDMRKRKQ 75 (362)
T ss_pred eeEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecc------eeEeccCCCCcEEEEeccchhh
Confidence 6789999999888888766431 11222 345667889988888765 6999999999999999998887
Q ss_pred cceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEE
Q 014154 88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF 167 (430)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~ 167 (430)
+..+..| .+.++++.++..... ..+++|+.||.+.+|++..- ..+..+. .|.+.|+.
T Consensus 76 lg~ll~H--------agsitaL~F~~~~S~------shLlS~sdDG~i~iw~~~~W--------~~~~slK-~H~~~Vt~ 132 (362)
T KOG0294|consen 76 LGILLSH--------AGSITALKFYPPLSK------SHLLSGSDDGHIIIWRVGSW--------ELLKSLK-AHKGQVTD 132 (362)
T ss_pred hcceecc--------ccceEEEEecCCcch------hheeeecCCCcEEEEEcCCe--------EEeeeec-ccccccce
Confidence 7776553 468888888876532 38999999999999986421 1333333 67778999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC
Q 014154 168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247 (430)
Q Consensus 168 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 247 (430)
++++|.+++.++.+.|+.+++||+-+|+.-+...... ..+.+.| +|.|.+++.+..+ .|-+|.+.+.
T Consensus 133 lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~----------~at~v~w--~~~Gd~F~v~~~~-~i~i~q~d~A 199 (362)
T KOG0294|consen 133 LSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN----------KATLVSW--SPQGDHFVVSGRN-KIDIYQLDNA 199 (362)
T ss_pred eEecCCCceEEEEcCCceeeeehhhcCccceeeccCC----------cceeeEE--cCCCCEEEEEecc-EEEEEecccH
Confidence 9999999999999999999999999887766555432 2345889 7899988887655 6889988863
Q ss_pred CcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEe--cCCCCeEEEEeCCCcE
Q 014154 248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR--HPTLPIIASCGLDSYL 325 (430)
Q Consensus 248 ~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~s~~~dg~i 325 (430)
. ....+.. ...+.|+.|- ++..|++|..|+.|.+||.....+...+.+| ..+|-++.+ .|++.+|+|+|.||.|
T Consensus 200 ~-v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH-~~RVK~i~~~~~~~~~~lvTaSSDG~I 275 (362)
T KOG0294|consen 200 S-VFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH-ENRVKDIASYTNPEHEYLVTASSDGFI 275 (362)
T ss_pred h-Hhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc-hhheeeeEEEecCCceEEEEeccCceE
Confidence 3 2333322 2457777775 5679999999999999999999999999998 999999884 4678899999999999
Q ss_pred EEEECCCC
Q 014154 326 RFWDIKTR 333 (430)
Q Consensus 326 ~iwd~~~~ 333 (430)
+|||++..
T Consensus 276 ~vWd~~~~ 283 (362)
T KOG0294|consen 276 KVWDIDME 283 (362)
T ss_pred EEEEcccc
Confidence 99999865
No 68
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=2.4e-29 Score=199.62 Aligned_cols=278 Identities=16% Similarity=0.184 Sum_probs=226.0
Q ss_pred CCCCCC-cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc
Q 014154 9 CPGCPP-LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL 87 (430)
Q Consensus 9 ~~~~~~-~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~ 87 (430)
+|-||. .-|++++.||.-.+-+-+++ .-+-+|.+|.+.|....+.- +...-|+++.|=+-+|||.-+|..
T Consensus 23 s~itp~g~flisa~kd~~pmlr~g~tg-----dwigtfeghkgavw~~~l~~----na~~aasaaadftakvw~a~tgde 93 (334)
T KOG0278|consen 23 SPITPDGYFLISASKDGKPMLRNGDTG-----DWIGTFEGHKGAVWSATLNK----NATRAASAAADFTAKVWDAVTGDE 93 (334)
T ss_pred cCCCCCceEEEEeccCCCchhccCCCC-----CcEEeeeccCcceeeeecCc----hhhhhhhhcccchhhhhhhhhhhh
Confidence 445665 56889999999999888887 78889999999966554433 344678899999999999999999
Q ss_pred cceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEE
Q 014154 88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF 167 (430)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~ 167 (430)
+.+|+. ..|....-+..+. ..+++++.+..++|+++..... +.+-+. .|.+.|..
T Consensus 94 lhsf~h----------khivk~~af~~ds-------~~lltgg~ekllrvfdln~p~A-------pp~E~~-ghtg~Ir~ 148 (334)
T KOG0278|consen 94 LHSFEH----------KHIVKAVAFSQDS-------NYLLTGGQEKLLRVFDLNRPKA-------PPKEIS-GHTGGIRT 148 (334)
T ss_pred hhhhhh----------hheeeeEEecccc-------hhhhccchHHHhhhhhccCCCC-------Cchhhc-CCCCccee
Confidence 998875 3444444444443 5899999999999998875432 222232 56788999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC
Q 014154 168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247 (430)
Q Consensus 168 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 247 (430)
+.|....+.|++++.|++|++||.+++..+.++... ..|+++.+ +++|.+|.+ ...+.|.+||..+.
T Consensus 149 v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~----------s~VtSlEv--s~dG~ilTi-a~gssV~Fwdaksf 215 (334)
T KOG0278|consen 149 VLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN----------SPVTSLEV--SQDGRILTI-AYGSSVKFWDAKSF 215 (334)
T ss_pred EEEeccCceEEeeccCCceEEEEeccCcEEEEEecC----------CCCcceee--ccCCCEEEE-ecCceeEEeccccc
Confidence 999988999999999999999999999999888764 66899999 788877665 56778999999985
Q ss_pred CcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeee-eCCCCCCeEEEEecCCCCeEEEEeCCCcEE
Q 014154 248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPIIASCGLDSYLR 326 (430)
Q Consensus 248 ~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~ 326 (430)
. ++..++.. ..|.+..++|+...+++|++|..++.||..++..+..+ ++| .++|.|+.|+|+|...++||.||+|+
T Consensus 216 ~-~lKs~k~P-~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh-~gpVhcVrFSPdGE~yAsGSEDGTir 292 (334)
T KOG0278|consen 216 G-LLKSYKMP-CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH-FGPVHCVRFSPDGELYASGSEDGTIR 292 (334)
T ss_pred c-ceeeccCc-cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC-CCceEEEEECCCCceeeccCCCceEE
Confidence 5 35555543 57899999999999999999999999999999998887 777 89999999999999999999999999
Q ss_pred EEECCCCcee
Q 014154 327 FWDIKTRQLL 336 (430)
Q Consensus 327 iwd~~~~~~~ 336 (430)
||.+..++..
T Consensus 293 lWQt~~~~~~ 302 (334)
T KOG0278|consen 293 LWQTTPGKTY 302 (334)
T ss_pred EEEecCCCch
Confidence 9998765543
No 69
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=4.7e-28 Score=206.46 Aligned_cols=281 Identities=14% Similarity=0.165 Sum_probs=229.2
Q ss_pred eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC
Q 014154 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 133 (430)
+.++.. .|..+.+++|+.|..+.++|...++.+..+++| ...|..+.+.+... .+++++.+-
T Consensus 222 i~ald~--~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh--------~kki~~v~~~~~~~--------~v~~aSad~ 283 (506)
T KOG0289|consen 222 ITALDI--IPSSSKILTGGEDKTAVLFDKPSNQILATLKGH--------TKKITSVKFHKDLD--------TVITASADE 283 (506)
T ss_pred eeEEee--cCCCCcceecCCCCceEEEecchhhhhhhccCc--------ceEEEEEEeccchh--------heeecCCcc
Confidence 445544 444567999999999999999999999998875 33666666665543 788999999
Q ss_pred eeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCC
Q 014154 134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP 213 (430)
Q Consensus 134 ~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 213 (430)
.++||++..+.. ..+. ..|..+|+.+..+|.+.||++++.|++..+.|++++..+.........
T Consensus 284 ~i~vws~~~~s~--------~~~~-~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~------- 347 (506)
T KOG0289|consen 284 IIRVWSVPLSSE--------PTSS-RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSD------- 347 (506)
T ss_pred eEEeeccccccC--------cccc-ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecccc-------
Confidence 999999765432 1122 357899999999999999999999999999999999887765543111
Q ss_pred cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEE
Q 014154 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL 293 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~ 293 (430)
..+++++| +|||.+|.+|..|+.|++||+.++. .+..|.+|+++|..++|+.+|-+|++++.|+.|++||+|..+..
T Consensus 348 v~~ts~~f--HpDgLifgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~ 424 (506)
T KOG0289|consen 348 VEYTSAAF--HPDGLIFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNF 424 (506)
T ss_pred ceeEEeeE--cCCceEEeccCCCceEEEEEcCCcc-ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccc
Confidence 44889999 8999999999999999999999866 58899999999999999999999999999999999999998887
Q ss_pred eeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC--CCceeeEEEeeccccceEEeeeccccccc-cccCCCCceE
Q 014154 294 GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK--TRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLE 370 (430)
Q Consensus 294 ~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~ 370 (430)
.++......++.++.|.+.|.+|+.++.|=.|++++-. ++..+.. +..| .+..+.+.|....++ ++++.|..++
T Consensus 425 kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~--~~~~-sg~st~v~Fg~~aq~l~s~smd~~l~ 501 (506)
T KOG0289|consen 425 KTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKE--LADH-SGLSTGVRFGEHAQYLASTSMDAILR 501 (506)
T ss_pred ceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeeh--hhhc-ccccceeeecccceEEeeccchhheE
Confidence 77776534579999999999999999888777776633 4555554 4445 455689999999998 8899999988
Q ss_pred ecCC
Q 014154 371 IQNG 374 (430)
Q Consensus 371 ~~~~ 374 (430)
++..
T Consensus 502 ~~a~ 505 (506)
T KOG0289|consen 502 LYAL 505 (506)
T ss_pred Eeec
Confidence 8753
No 70
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.2e-29 Score=211.59 Aligned_cols=279 Identities=13% Similarity=0.151 Sum_probs=213.4
Q ss_pred CCCCCCC---cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC
Q 014154 8 ECPGCPP---LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN 84 (430)
Q Consensus 8 ~~~~~~~---~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~ 84 (430)
.|.+-.| ..+++|+.||.|+|||+... .++.+|..|.+.|.-+++.. ..+++++.|.+|+.|-+.
T Consensus 70 ~~lakhp~~ls~~aSGs~DG~VkiWnlsqR-----~~~~~f~AH~G~V~Gi~v~~------~~~~tvgdDKtvK~wk~~- 137 (433)
T KOG0268|consen 70 SCLAKHPNKLSTVASGSCDGEVKIWNLSQR-----ECIRTFKAHEGLVRGICVTQ------TSFFTVGDDKTVKQWKID- 137 (433)
T ss_pred chhhcCcchhhhhhccccCceEEEEehhhh-----hhhheeecccCceeeEEecc------cceEEecCCcceeeeecc-
Confidence 4555444 56889999999999999986 77888999999977766655 347888899999999874
Q ss_pred CcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCc
Q 014154 85 GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT 164 (430)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~ 164 (430)
+.++.++.+- ..+.++.-.... ..+++|+ ..+.||+..... ++.-+... -..
T Consensus 138 ~~p~~tilg~---------s~~~gIdh~~~~--------~~FaTcG--e~i~IWD~~R~~--------Pv~smswG-~Dt 189 (433)
T KOG0268|consen 138 GPPLHTILGK---------SVYLGIDHHRKN--------SVFATCG--EQIDIWDEQRDN--------PVSSMSWG-ADS 189 (433)
T ss_pred CCcceeeecc---------cccccccccccc--------ccccccC--ceeeecccccCC--------ccceeecC-CCc
Confidence 4555555441 111112111111 3455544 357888875333 45444432 356
Q ss_pred eEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEE
Q 014154 165 IAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (430)
Q Consensus 165 i~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (430)
|.++.|+|.. ..|++++.|+.|.+||++++.++..+... -.-+.++| +|.+-.+++|++|..++.||
T Consensus 190 i~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~----------mRTN~Isw--nPeafnF~~a~ED~nlY~~D 257 (433)
T KOG0268|consen 190 ISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT----------MRTNTICW--NPEAFNFVAANEDHNLYTYD 257 (433)
T ss_pred eeEEecCCCcchheeeeccCCceEEEecccCCccceeeee----------ccccceec--Cccccceeeccccccceehh
Confidence 8999999954 56777779999999999998877665432 33567899 78888899999999999999
Q ss_pred CCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCC
Q 014154 244 TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS 323 (430)
Q Consensus 244 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg 323 (430)
++....|+....+|.+.|.++.|||.|+-+++|+.|.+|+||..+.+.....+....-..|.++.||.|.+++++||.|+
T Consensus 258 mR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~ 337 (433)
T KOG0268|consen 258 MRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDG 337 (433)
T ss_pred hhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCc
Confidence 99988899999999999999999999999999999999999999887664444332235799999999999999999999
Q ss_pred cEEEEECCCCceeeE
Q 014154 324 YLRFWDIKTRQLLSA 338 (430)
Q Consensus 324 ~i~iwd~~~~~~~~~ 338 (430)
.|++|.....+.+..
T Consensus 338 nvRlWka~Aseklgv 352 (433)
T KOG0268|consen 338 NVRLWKAKASEKLGV 352 (433)
T ss_pred ceeeeecchhhhcCC
Confidence 999999876655554
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.5e-28 Score=211.28 Aligned_cols=278 Identities=15% Similarity=0.219 Sum_probs=211.1
Q ss_pred CCcceeeeeecCCCCCce-eEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEE
Q 014154 50 SSNCVLAASIDDSQNDPL-LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT 128 (430)
Q Consensus 50 ~~~~~~~~~~~~~p~g~~-l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 128 (430)
..|..++|++ ..++ +|+.+ .-.+.||+..+......+..+ .+.+.++.+-... ..+++
T Consensus 27 ~~vssl~fsp----~~P~d~aVt~-S~rvqly~~~~~~~~k~~srF--------k~~v~s~~fR~DG--------~Llaa 85 (487)
T KOG0310|consen 27 NSVSSLCFSP----KHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRF--------KDVVYSVDFRSDG--------RLLAA 85 (487)
T ss_pred CcceeEecCC----CCCCceEEec-ccEEEEEecchhhhhhhHHhh--------ccceeEEEeecCC--------eEEEc
Confidence 4444455544 3322 34433 367999998777666655432 1244444443322 46777
Q ss_pred EccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCC
Q 014154 129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS 207 (430)
Q Consensus 129 ~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 207 (430)
|...|.++|++..... .++.++ .|..++..+.|+|. +..+++|+.|+.+++||+.+......+..|.
T Consensus 86 GD~sG~V~vfD~k~r~--------iLR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ht--- 153 (487)
T KOG0310|consen 86 GDESGHVKVFDMKSRV--------ILRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHT--- 153 (487)
T ss_pred cCCcCcEEEeccccHH--------HHHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCc---
Confidence 8888999999843211 344444 67899999999995 4567788889999999999988766777766
Q ss_pred CCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEc
Q 014154 208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (430)
Q Consensus 208 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 287 (430)
+.|.|.++. +.++..+++|+.||.|++||++.....+..++ |..+|..+.+-|.|..|++++ .+.|++||+
T Consensus 154 ------DYVR~g~~~-~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl 224 (487)
T KOG0310|consen 154 ------DYVRCGDIS-PANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKVWDL 224 (487)
T ss_pred ------ceeEeeccc-cCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEEEEe
Confidence 899999995 44566999999999999999998644455555 788999999999999999886 567999999
Q ss_pred cCCeE-EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCC
Q 014154 288 RTGKL-LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD 365 (430)
Q Consensus 288 ~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~ 365 (430)
-+|.. +..+..| ...|+|+.+..++..|++++-|+.|++||+.+.+.++.+.+.+ .|.+++.+|+++. +.|..
T Consensus 225 ~~G~qll~~~~~H-~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~----pvLsiavs~dd~t~viGms 299 (487)
T KOG0310|consen 225 TTGGQLLTSMFNH-NKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG----PVLSIAVSPDDQTVVIGMS 299 (487)
T ss_pred cCCceehhhhhcc-cceEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc----ceeeEEecCCCceEEEecc
Confidence 86554 5555556 8899999999999999999999999999999999999875544 4899999999988 88888
Q ss_pred CCceEecCC
Q 014154 366 APMLEIQNG 374 (430)
Q Consensus 366 d~~i~~~~~ 374 (430)
+|.+.+-+.
T Consensus 300 nGlv~~rr~ 308 (487)
T KOG0310|consen 300 NGLVSIRRR 308 (487)
T ss_pred cceeeeehh
Confidence 998877643
No 72
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-28 Score=196.20 Aligned_cols=267 Identities=12% Similarity=0.168 Sum_probs=205.7
Q ss_pred CCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC-CcccceeeccCCCCCCC
Q 014154 23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQP 101 (430)
Q Consensus 23 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~ 101 (430)
.|.+.|-++..+ .++. ....+.- .+. ...++|..+. .+.+++++.||+++|||... ..++..++.|
T Consensus 37 ~G~L~ile~~~~-~gi~-e~~s~d~-~D~--LfdV~Wse~~-e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH------- 103 (311)
T KOG0277|consen 37 NGRLFILEVTDP-KGIQ-ECQSYDT-EDG--LFDVAWSENH-ENQVIAASGDGSLRLFDLTMPSKPIHKFKEH------- 103 (311)
T ss_pred CceEEEEecCCC-CCeE-EEEeeec-ccc--eeEeeecCCC-cceEEEEecCceEEEeccCCCCcchhHHHhh-------
Confidence 478888888643 2222 2222321 233 5556663343 35688899999999999642 3456666553
Q ss_pred CCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEE
Q 014154 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFG 180 (430)
Q Consensus 102 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~ 180 (430)
...+.++.+..... ..+++++-|+++++|+..... .++.+. .|...|...+|+| ..++++++
T Consensus 104 -~~EV~Svdwn~~~r-------~~~ltsSWD~TiKLW~~~r~~--------Sv~Tf~-gh~~~Iy~a~~sp~~~nlfas~ 166 (311)
T KOG0277|consen 104 -KREVYSVDWNTVRR-------RIFLTSSWDGTIKLWDPNRPN--------SVQTFN-GHNSCIYQAAFSPHIPNLFASA 166 (311)
T ss_pred -hhheEEeccccccc-------eeEEeeccCCceEeecCCCCc--------ceEeec-CCccEEEEEecCCCCCCeEEEc
Confidence 45777666655544 578888999999999976554 666666 6889999999999 67899999
Q ss_pred eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCC
Q 014154 181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP 260 (430)
Q Consensus 181 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 260 (430)
+.|+++++||++.......+..|. ..+.++.|. .-+.+.|++|+.|+.|+.||++..+.|+..+.+|+-.
T Consensus 167 Sgd~~l~lwdvr~~gk~~~i~ah~---------~Eil~cdw~-ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A 236 (311)
T KOG0277|consen 167 SGDGTLRLWDVRSPGKFMSIEAHN---------SEILCCDWS-KYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA 236 (311)
T ss_pred cCCceEEEEEecCCCceeEEEecc---------ceeEeeccc-ccCCcEEEecCCCceEEEEehhhccccceeecCCceE
Confidence 999999999998654444466654 568999995 4467899999999999999999999999999999999
Q ss_pred eEEEEecCCC-CEEEEEeCCCcEEEEEccCCeE-EeeeeCCCCCCeEEEEecC-CCCeEEEEeCCCcEEEEEC
Q 014154 261 IKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHP-TLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 261 i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~i~iwd~ 330 (430)
|+.++|||.. ..|++++.|-+++|||...+.. +.++.. |..-+..+.||+ +..++|+++.|+.++||+.
T Consensus 237 VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~-HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 237 VRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDH-HTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEEEecCcchhhHhhhccccceEEecccccchhhhhhhhc-cceEEeccccccccCceeeecccccceeeecc
Confidence 9999999965 6889999999999999986554 444554 489999999998 5578999999999999984
No 73
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.5e-27 Score=194.60 Aligned_cols=320 Identities=12% Similarity=0.046 Sum_probs=226.4
Q ss_pred eEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCc
Q 014154 26 IKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDG 105 (430)
Q Consensus 26 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 105 (430)
+.-|+.+.....-+-.+..+.+|...|+.++|+ .||++||+.+.|++|+||++.+... +.|..+...-.-+.
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~Fs----SdGK~lat~~~Dr~Ir~w~~~DF~~----~eHr~~R~nve~dh 134 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFS----SDGKKLATISGDRSIRLWDVRDFEN----KEHRCIRQNVEYDH 134 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEc----CCCceeEEEeCCceEEEEecchhhh----hhhhHhhccccCCC
Confidence 445655543222223345678899997766664 5888999999999999999876331 11221111111234
Q ss_pred eEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEee-----ecCCCceEEEEEcCCCCEEEEE
Q 014154 106 IVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-----VCASGTIAFSKVDISEKFSLFG 180 (430)
Q Consensus 106 i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~-----~~~~~~i~~~~~~~~~~~l~~~ 180 (430)
.+.+.+.+... ..++++-.+..+++|.+....+- +..-+..-|+ -.|...+..+-...++.+|+++
T Consensus 135 pT~V~FapDc~-------s~vv~~~~g~~l~vyk~~K~~dG--~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsa 205 (420)
T KOG2096|consen 135 PTRVVFAPDCK-------SVVVSVKRGNKLCVYKLVKKTDG--SGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSA 205 (420)
T ss_pred ceEEEECCCcc-------eEEEEEccCCEEEEEEeeecccC--CCCcccccccccccchhcccceEEEeecCCceEEEEe
Confidence 44456666554 46777777789999998766541 1111112222 2345667777778889999999
Q ss_pred eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC-------cceEE
Q 014154 181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-------RPVMS 253 (430)
Q Consensus 181 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~ 253 (430)
+.|..|.+|++. |+.+..+...+ ..-+..+. +|+|++|++++.--.|++|.+--++ ..+..
T Consensus 206 s~dt~i~lw~lk-Gq~L~~idtnq---------~~n~~aav--SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~ 273 (420)
T KOG2096|consen 206 SLDTKICLWDLK-GQLLQSIDTNQ---------SSNYDAAV--SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS 273 (420)
T ss_pred cCCCcEEEEecC-Cceeeeecccc---------ccccceee--CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhe
Confidence 999999999998 88877766544 22344566 8999999999999999999864321 13567
Q ss_pred EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC----C---eEEeee----eCCCCCCeEEEEecCCCCeEEEEeCC
Q 014154 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT----G---KLLGCF----IGKCSGSIRSIARHPTLPIIASCGLD 322 (430)
Q Consensus 254 ~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~----~---~~~~~~----~~~~~~~v~~i~~~~~~~~l~s~~~d 322 (430)
+.+|.+.|..++|+|+...+++.+.||.++|||+.- + +.+.+. ... .+....+.++|+|+.|+.+. -
T Consensus 274 LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aa-g~~p~RL~lsP~g~~lA~s~-g 351 (420)
T KOG2096|consen 274 LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAA-GSEPVRLELSPSGDSLAVSF-G 351 (420)
T ss_pred eccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhc-CCCceEEEeCCCCcEEEeec-C
Confidence 899999999999999999999999999999999752 1 122222 111 33445899999999887764 4
Q ss_pred CcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCCCc
Q 014154 323 SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 323 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~~ 378 (430)
..+.+|..++|+....+ -..| ...|.+++|+++|++++...|..++++...+..
T Consensus 352 s~l~~~~se~g~~~~~~-e~~h-~~~Is~is~~~~g~~~atcGdr~vrv~~ntpg~ 405 (420)
T KOG2096|consen 352 SDLKVFASEDGKDYPEL-EDIH-STTISSISYSSDGKYIATCGDRYVRVIRNTPGW 405 (420)
T ss_pred CceEEEEcccCccchhH-HHhh-cCceeeEEecCCCcEEeeecceeeeeecCCCch
Confidence 56999999998887764 2345 566899999999999888889999999865543
No 74
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=3.5e-28 Score=218.66 Aligned_cols=287 Identities=12% Similarity=0.174 Sum_probs=226.7
Q ss_pred ceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEE-EEEeecCcc
Q 014154 39 PKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVG-LHLFKRQRE 117 (430)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~ 117 (430)
.++...+.+|...+..+++.. +-.+++++.||++++|+-...+.+.... +..+.+-+.. +.+...+.
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~-----~~~i~s~sRd~t~~vw~~~~~~~l~~~~------~~~~~g~i~~~i~y~e~~~- 71 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTD-----GVCIISGSRDGTVKVWAKKGKQYLETHA------FEGPKGFIANSICYAESDK- 71 (745)
T ss_pred ceeEEEeccCccchheeEecC-----CeEEeecCCCCceeeeeccCccccccee------cccCcceeeccceeccccC-
Confidence 356778899999987666543 2368999999999999976555444222 1222234443 34443333
Q ss_pred cccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 014154 118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI 197 (430)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 197 (430)
+++++++.|+.+.+|.+.... ++..+. .|...|.+++...++. +++|+.|.++++|-.. ++.
T Consensus 72 ------~~l~~g~~D~~i~v~~~~~~~--------P~~~Lk-gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~ 133 (745)
T KOG0301|consen 72 ------GRLVVGGMDTTIIVFKLSQAE--------PLYTLK-GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELV 133 (745)
T ss_pred ------cceEeecccceEEEEecCCCC--------chhhhh-ccccceeeeecCCcCc-eEecccccceEEecch--hhh
Confidence 679999999999999876443 444444 7889999999877776 9999999999999875 445
Q ss_pred EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe
Q 014154 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (430)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 277 (430)
..+++|+ ..|.++++. |++ .++||+.|.+|++|.-. ..+.+|.+|..-|+.+++-+++ .+++++
T Consensus 134 ~~l~gH~---------asVWAv~~l--~e~-~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~-~flScs 197 (745)
T KOG0301|consen 134 YSLQGHT---------ASVWAVASL--PEN-TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDS-HFLSCS 197 (745)
T ss_pred cccCCcc---------hheeeeeec--CCC-cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCC-CeEeec
Confidence 5566665 779999884 544 89999999999999864 3588999999999999998776 677888
Q ss_pred CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccc
Q 014154 278 GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK 357 (430)
Q Consensus 278 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 357 (430)
.||.|++|++ ++.++.++.+| +.-|+++...+++..++++++|++++||+.. .+.+.+.++ ...+|++.+-++
T Consensus 198 NDg~Ir~w~~-~ge~l~~~~gh-tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP---ttsiWsa~~L~N 270 (745)
T KOG0301|consen 198 NDGSIRLWDL-DGEVLLEMHGH-TNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP---TTSIWSAKVLLN 270 (745)
T ss_pred CCceEEEEec-cCceeeeeecc-ceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC---ccceEEEEEeeC
Confidence 9999999999 89999999999 9999999977788899999999999999976 777776533 445799999999
Q ss_pred ccccccCCCCceEecCCCCCc
Q 014154 358 EVANAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 358 g~~~~~~~d~~i~~~~~~~~~ 378 (430)
|.+++|++||.|+||.....+
T Consensus 271 gDIvvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 271 GDIVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred CCEEEeccCceEEEEEecccc
Confidence 999999999999999887543
No 75
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.3e-28 Score=202.55 Aligned_cols=281 Identities=17% Similarity=0.235 Sum_probs=229.6
Q ss_pred cccCCCCCCC--cceeeecCCCceEEEEccCCCCCcceeeeecC--------CCCCCcceeeeeecCCCCCceeEEeecC
Q 014154 5 TTLECPGCPP--LRALTFDSLGLIKVIEARGEHGGVPKVVERWG--------DPHSSNCVLAASIDDSQNDPLLAVARKN 74 (430)
Q Consensus 5 ~~~~~~~~~~--~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~p~g~~l~~g~~d 74 (430)
..++|....| -.|++|+.||.|.|||..+| ++...+. .++.+|. +++| +.|...||+|+.|
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~G-----KlrKDLkYQAqd~fMMmd~aVl--ci~F--SRDsEMlAsGsqD 284 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTG-----KLRKDLKYQAQDNFMMMDDAVL--CISF--SRDSEMLASGSQD 284 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccc-----hhhhhhhhhhhcceeecccceE--EEee--cccHHHhhccCcC
Confidence 3455555544 57999999999999999987 4443332 3566644 4444 5567799999999
Q ss_pred CeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcce
Q 014154 75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV 154 (430)
Q Consensus 75 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i 154 (430)
|.|+||.+.+|.+++.|.. +|...+.++.+..... .+++++.|.++++..+..+. .+
T Consensus 285 GkIKvWri~tG~ClRrFdr-------AHtkGvt~l~FSrD~S--------qiLS~sfD~tvRiHGlKSGK--------~L 341 (508)
T KOG0275|consen 285 GKIKVWRIETGQCLRRFDR-------AHTKGVTCLSFSRDNS--------QILSASFDQTVRIHGLKSGK--------CL 341 (508)
T ss_pred CcEEEEEEecchHHHHhhh-------hhccCeeEEEEccCcc--------hhhcccccceEEEeccccch--------hH
Confidence 9999999999999999874 3456888888876654 89999999999999886544 55
Q ss_pred EEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe
Q 014154 155 KSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT 234 (430)
Q Consensus 155 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 234 (430)
+-+. .|...|+...|.++|..+++++.||+|++|+..+.+++.+++..... ..|+++... +.+...+++|.
T Consensus 342 KEfr-GHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d-------~~vnsv~~~-PKnpeh~iVCN 412 (508)
T KOG0275|consen 342 KEFR-GHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTD-------YPVNSVILL-PKNPEHFIVCN 412 (508)
T ss_pred HHhc-CccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCc-------ccceeEEEc-CCCCceEEEEc
Confidence 5665 67889999999999999999999999999999999999888765422 457776665 55677899999
Q ss_pred CCCcEEEEECCCCCcceEEEeec---CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecC
Q 014154 235 NDHQVRLYDTSAQRRPVMSFDFR---ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP 311 (430)
Q Consensus 235 ~dg~i~iwd~~~~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~ 311 (430)
..++|.|-++.. + .++.+... .+...+...||.|.++++.++|+.++.|...+|++..++..| ...|..++-+|
T Consensus 413 rsntv~imn~qG-Q-vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh-EkdvIGl~HHP 489 (508)
T KOG0275|consen 413 RSNTVYIMNMQG-Q-VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH-EKDVIGLTHHP 489 (508)
T ss_pred CCCeEEEEeccc-e-EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc-cccccccccCc
Confidence 999999999985 3 46666542 345566778999999999999999999999999999999998 88899999999
Q ss_pred CCCeEEEEeCCCcEEEEE
Q 014154 312 TLPIIASCGLDSYLRFWD 329 (430)
Q Consensus 312 ~~~~l~s~~~dg~i~iwd 329 (430)
..+.|++-+.||.+++|.
T Consensus 490 HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 490 HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccchhhhhcccchhhhcC
Confidence 999999999999999994
No 76
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.3e-27 Score=212.98 Aligned_cols=267 Identities=15% Similarity=0.141 Sum_probs=215.5
Q ss_pred eeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCC
Q 014154 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (430)
Q Consensus 17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 96 (430)
+++-+....|.+|+...+ ++..-...+... +.++.| .++|.+||+|..+|.|.|||..+.+.+..+.+
T Consensus 190 ~laValg~~vylW~~~s~-----~v~~l~~~~~~~--vtSv~w--s~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~--- 257 (484)
T KOG0305|consen 190 VLAVALGQSVYLWSASSG-----SVTELCSFGEEL--VTSVKW--SPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG--- 257 (484)
T ss_pred eEEEEecceEEEEecCCC-----ceEEeEecCCCc--eEEEEE--CCCCCEEEEeecCCeEEEEehhhccccccccC---
Confidence 444445568999999987 433333333445 555666 77899999999999999999876664444322
Q ss_pred CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCE
Q 014154 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF 176 (430)
Q Consensus 97 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~ 176 (430)
.|...|.+++|. +..
T Consensus 258 ---------------------------------------------------------------~h~~rvg~laW~--~~~ 272 (484)
T KOG0305|consen 258 ---------------------------------------------------------------SHASRVGSLAWN--SSV 272 (484)
T ss_pred ---------------------------------------------------------------CcCceeEEEecc--Cce
Confidence 145667777886 678
Q ss_pred EEEEeCCCeEEEEECCCCeeeEe-eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe
Q 014154 177 SLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD 255 (430)
Q Consensus 177 l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 255 (430)
+.+|+.++.|..+|++..+.... +..|. ..|..+.| ++++.++++|+.|+.+.|||... ..+...+.
T Consensus 273 lssGsr~~~I~~~dvR~~~~~~~~~~~H~---------qeVCgLkw--s~d~~~lASGgnDN~~~Iwd~~~-~~p~~~~~ 340 (484)
T KOG0305|consen 273 LSSGSRDGKILNHDVRISQHVVSTLQGHR---------QEVCGLKW--SPDGNQLASGGNDNVVFIWDGLS-PEPKFTFT 340 (484)
T ss_pred EEEecCCCcEEEEEEecchhhhhhhhccc---------ceeeeeEE--CCCCCeeccCCCccceEeccCCC-ccccEEEe
Confidence 88999999999999988766555 45544 77999999 89999999999999999999976 44788999
Q ss_pred ecCCCeEEEEecCC-CCEEEEEe--CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe--CCCcEEEEEC
Q 014154 256 FRETPIKAVAEEPD-SFNIYIGN--GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG--LDSYLRFWDI 330 (430)
Q Consensus 256 ~~~~~i~~~~~sp~-~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~--~dg~i~iwd~ 330 (430)
.|.+.|.+++|+|- ..+||+|+ .|+.|++||..+++.+..+.. .+.|..|.|++..+-|+++. .++.|.||++
T Consensus 341 ~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt--gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ 418 (484)
T KOG0305|consen 341 EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT--GSQVCSLIWSKKYKELLSTHGYSENQITLWKY 418 (484)
T ss_pred ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc--CCceeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence 99999999999994 46888875 689999999999999988876 57999999999986666553 5678999999
Q ss_pred CCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154 331 KTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~ 377 (430)
.+.+.+.. +.+| ...|..++++|||.. ++++.|.++++|+.-..
T Consensus 419 ps~~~~~~--l~gH-~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 419 PSMKLVAE--LLGH-TSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred cccceeee--ecCC-cceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99888877 7789 555899999999998 99999999999998774
No 77
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=2.2e-26 Score=215.18 Aligned_cols=258 Identities=14% Similarity=0.075 Sum_probs=186.1
Q ss_pred eecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCC-CceeEEeecCCeEEEecCCCCcccceeeccCCC
Q 014154 19 TFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQN-DPLLAVARKNGLTDILNPLNGDLRVAISNAGDS 97 (430)
Q Consensus 19 t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 97 (430)
.|+.+|.|++|+.... ..+..+.+|...|..++ | +|+ +++||+|+.||+|+|||+.++.....
T Consensus 49 gGG~~gvI~L~~~~r~-----~~v~~L~gH~~~V~~la--f--sP~~~~lLASgS~DgtIrIWDi~t~~~~~~------- 112 (568)
T PTZ00420 49 GGGLIGAIRLENQMRK-----PPVIKLKGHTSSILDLQ--F--NPCFSEILASGSEDLTIRVWEIPHNDESVK------- 112 (568)
T ss_pred CCCceeEEEeeecCCC-----ceEEEEcCCCCCEEEEE--E--cCCCCCEEEEEeCCCeEEEEECCCCCcccc-------
Confidence 4667888999988765 56677889998855554 4 554 67999999999999999865431100
Q ss_pred CCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCE-
Q 014154 98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF- 176 (430)
Q Consensus 98 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~- 176 (430)
.+. . .+..+ ..|...|.+++|+|++..
T Consensus 113 -------~i~--------~------------------------------------p~~~L-~gH~~~V~sVaf~P~g~~i 140 (568)
T PTZ00420 113 -------EIK--------D------------------------------------PQCIL-KGHKKKISIIDWNPMNYYI 140 (568)
T ss_pred -------ccc--------c------------------------------------ceEEe-ecCCCcEEEEEECCCCCeE
Confidence 000 0 00111 145678999999998875
Q ss_pred EEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee
Q 014154 177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF 256 (430)
Q Consensus 177 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 256 (430)
|++++.|++|++||+++++....+..+ ..|.+++| +|+|.+|++++.|+.|+|||++++. .+..+.+
T Consensus 141 LaSgS~DgtIrIWDl~tg~~~~~i~~~----------~~V~Slsw--spdG~lLat~s~D~~IrIwD~Rsg~-~i~tl~g 207 (568)
T PTZ00420 141 MCSSGFDSFVNIWDIENEKRAFQINMP----------KKLSSLKW--NIKGNLLSGTCVGKHMHIIDPRKQE-IASSFHI 207 (568)
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEecC----------CcEEEEEE--CCCCCEEEEEecCCEEEEEECCCCc-EEEEEec
Confidence 568999999999999998877665422 56899999 8999999999999999999999865 4778889
Q ss_pred cCCCeEE-----EEecCCCCEEEEEeCCC----cEEEEEccC-CeEEeeeeCCC-CCCeEEEEecCCCCeEEEEeCCCcE
Q 014154 257 RETPIKA-----VAEEPDSFNIYIGNGSG----DLASVDIRT-GKLLGCFIGKC-SGSIRSIARHPTLPIIASCGLDSYL 325 (430)
Q Consensus 257 ~~~~i~~-----~~~sp~~~~l~~~~~d~----~i~iwd~~~-~~~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~~dg~i 325 (430)
|.+.+.+ ..|++++.+|++++.|+ .|+|||+++ .+++..+..+. .+.+......+++.++++|+.|+.|
T Consensus 208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC 287 (568)
T ss_pred ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence 9876543 23568889999988774 799999995 55665554321 2333344445668899999999999
Q ss_pred EEEECCCCceeeEEEeeccccceEEeeecccccc
Q 014154 326 RFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV 359 (430)
Q Consensus 326 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 359 (430)
++|++..+... .+ -.........+++|.|...
T Consensus 288 r~~e~~~~~~~-~l-~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 288 RYYQHSLGSIR-KV-NEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEEccCCcEE-ee-cccccCCCccceEEccccc
Confidence 99999876432 22 1222344467888988755
No 78
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5e-28 Score=216.13 Aligned_cols=295 Identities=12% Similarity=0.178 Sum_probs=221.2
Q ss_pred eecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEE
Q 014154 58 SIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASM 137 (430)
Q Consensus 58 ~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v 137 (430)
-..+.|.++||++|+.||.|++|++.......+-. ....+..|.+.+..+.+.... ..+++++.|-++.+
T Consensus 30 Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~--~~asme~HsDWVNDiiL~~~~--------~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 30 LQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP--YIASMEHHSDWVNDIILCGNG--------KTLISASSDTTVKV 99 (735)
T ss_pred ccccCCCCceEEecCCCceEEEeccccccCCcccc--hhhhhhhhHhHHhhHHhhcCC--------CceEEecCCceEEE
Confidence 33456788899999999999999986432210000 011122345566655555443 38999999999999
Q ss_pred EEeeecCccccCCCcceEEeeecCCCceEEEEE-cCCCCEEEEEeCCCeEEEEECCCC--eeeEeeCCCCCCCCCCcCCc
Q 014154 138 RSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV-DISEKFSLFGGKGVEVNVWDLDKC--EKIWTAKPPPKNSLGIFTPT 214 (430)
Q Consensus 138 ~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~-~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~ 214 (430)
|+...... ..+.... .|...|.|+++ .++..++++|+.|+.|.+||++++ +.+.++.......+...+..
T Consensus 100 W~~~~~~~------~c~stir-~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 100 WNAHKDNT------FCMSTIR-THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred eecccCcc------hhHhhhh-cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 99764321 1112222 46789999999 778899999999999999999987 34444444444444434557
Q ss_pred ceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEe
Q 014154 215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG 294 (430)
Q Consensus 215 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 294 (430)
.|.+++. ++.+..|++|+..+.+++||.++.++ +..+.+|...|.++..++||..+++++.||+|++||+...+++.
T Consensus 173 siYSLA~--N~t~t~ivsGgtek~lr~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~ 249 (735)
T KOG0308|consen 173 SIYSLAM--NQTGTIIVSGGTEKDLRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLA 249 (735)
T ss_pred ceeeeec--CCcceEEEecCcccceEEeccccccc-eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceee
Confidence 8999999 88899999999999999999999765 78888999999999999999999999999999999999999999
Q ss_pred eeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecC
Q 014154 295 CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQN 373 (430)
Q Consensus 295 ~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~ 373 (430)
++..| ...|+++..+|+-..+++|+.||.|..=|+++.+....+ ++. .+.+..+..+....- -+++.|+.|+-|.
T Consensus 250 T~~vH-~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli-ck~--daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 250 TYIVH-KEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI-CKE--DAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred eEEec-cCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEe-ecC--CCchhhhhhccccCCceeeeccccceecC
Confidence 99998 778999999999999999999999999999885333222 211 223455555533333 5566777787776
Q ss_pred CCC
Q 014154 374 GND 376 (430)
Q Consensus 374 ~~~ 376 (430)
...
T Consensus 326 ~~~ 328 (735)
T KOG0308|consen 326 LEP 328 (735)
T ss_pred Ccc
Confidence 654
No 79
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2.8e-27 Score=220.38 Aligned_cols=265 Identities=15% Similarity=0.215 Sum_probs=223.1
Q ss_pred ceeEEeecCCeEEEecCCCCcccce-eeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecC
Q 014154 66 PLLAVARKNGLTDILNPLNGDLRVA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~ 144 (430)
.++++++.+.+|++|+..++..+.. +.+ |.+.+.++.+.... ..+++|+.|.+++||++....
T Consensus 219 ~~~~~~s~~~tl~~~~~~~~~~i~~~l~G--------H~g~V~~l~~~~~~--------~~lvsgS~D~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLNNGYLILTRLVG--------HFGGVWGLAFPSGG--------DKLVSGSTDKTERVWDCSTGE 282 (537)
T ss_pred CeEEecCCCceeEEeecccceEEEeeccC--------CCCCceeEEEecCC--------CEEEEEecCCcEEeEecCCCc
Confidence 4799999999999999999887776 655 45577777776533 599999999999999975443
Q ss_pred ccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeec
Q 014154 145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI 224 (430)
Q Consensus 145 ~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 224 (430)
.+.++. .|...+.++... ..++++|+.|.+|++|+++++..+..+.+|. .+|.++.+
T Consensus 283 --------C~~~l~-gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~---------~~V~~v~~--- 339 (537)
T KOG0274|consen 283 --------CTHSLQ-GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHT---------GPVNCVQL--- 339 (537)
T ss_pred --------EEEEec-CCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecccc---------ccEEEEEe---
Confidence 566665 677888887764 5678889999999999999999998888765 88999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC-eEEeeeeCCCCCC
Q 014154 225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGS 303 (430)
Q Consensus 225 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~ 303 (430)
++.++++|+.|++|++||+.+++ ++..+.+|...|.++.+.+. ..+++|+.|++|++||+++. +++..+.+| .+-
T Consensus 340 -~~~~lvsgs~d~~v~VW~~~~~~-cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h-~~~ 415 (537)
T KOG0274|consen 340 -DEPLLVSGSYDGTVKVWDPRTGK-CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGH-TSL 415 (537)
T ss_pred -cCCEEEEEecCceEEEEEhhhce-eeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCC-ccc
Confidence 58899999999999999999865 59999999999999988764 79999999999999999999 999999998 888
Q ss_pred eEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCCCc
Q 014154 304 IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 304 v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~~ 378 (430)
+..+.+ .+++|++++.|+.|++||..+++++.+ +.++....+..+++. +..+++++.|+.+.+|+.....
T Consensus 416 v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~--~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 416 VSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRT--LEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred cccccc--ccceeEeccccccEEEeecccCceeee--eccCCcccEEEeecC-cceEEEEecCCeeEEEecccCc
Confidence 876665 778999999999999999999999998 445223446777776 5556999999999999887654
No 80
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1e-27 Score=208.66 Aligned_cols=288 Identities=14% Similarity=0.070 Sum_probs=213.5
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec-
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN- 93 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~- 93 (430)
.|+++|+.|.+|++||+.+-...+..+..-.....+.+..+.+ +|.|..|++.+.....+|+|-.-.......++
T Consensus 180 aR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~y----s~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGD 255 (641)
T KOG0772|consen 180 ARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQY----SVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGD 255 (641)
T ss_pred ceeeeccccceEEEEecccccccchhhhccCcccccccceeee----cCCCCeEEEEecCcceeEEccCCceeeeeeccc
Confidence 8999999999999999998544444322222223344444444 56777888888889999999643333333333
Q ss_pred --cCCCCC-CCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC----CCceE
Q 014154 94 --AGDSGA-QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA----SGTIA 166 (430)
Q Consensus 94 --~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~----~~~i~ 166 (430)
+..... -+|...+.+..|.+... +.+++++.||++++|++..... ...++.... .-.++
T Consensus 256 QYI~Dm~nTKGHia~lt~g~whP~~k-------~~FlT~s~DgtlRiWdv~~~k~-------q~qVik~k~~~g~Rv~~t 321 (641)
T KOG0772|consen 256 QYIRDMYNTKGHIAELTCGCWHPDNK-------EEFLTCSYDGTLRIWDVNNTKS-------QLQVIKTKPAGGKRVPVT 321 (641)
T ss_pred hhhhhhhccCCceeeeeccccccCcc-------cceEEecCCCcEEEEecCCchh-------heeEEeeccCCCcccCce
Confidence 111111 14455666666666665 7999999999999999876543 445554332 23578
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCee---eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEE
Q 014154 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (430)
.++|++++++||+|+.||.|.+|+...... ...-..|.. ...|+|+.| +++|++|++-+.|+++++||
T Consensus 322 sC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~-------g~~Itsi~F--S~dg~~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 322 SCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP-------GQDITSISF--SYDGNYLLSRGFDDTLKVWD 392 (641)
T ss_pred eeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCC-------CCceeEEEe--ccccchhhhccCCCceeeee
Confidence 999999999999999999999999743211 111122321 146999999 89999999999999999999
Q ss_pred CCCCCcceEEEeec--CCCeEEEEecCCCCEEEEEeC------CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCe
Q 014154 244 TSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNG------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI 315 (430)
Q Consensus 244 ~~~~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 315 (430)
++..++++....+- ..+-+.++|||+.++|++|+. .|.+.+||..+...++++.-. ...|..+.|||.-+.
T Consensus 393 Lrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-~aSvv~~~WhpkLNQ 471 (641)
T KOG0772|consen 393 LRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-TASVVRCLWHPKLNQ 471 (641)
T ss_pred ccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC-CceEEEEeecchhhh
Confidence 99988887776653 235678899999999999863 478999999999999988876 788999999999888
Q ss_pred EEEEeCCCcEEEEEC
Q 014154 316 IASCGLDSYLRFWDI 330 (430)
Q Consensus 316 l~s~~~dg~i~iwd~ 330 (430)
|+.|+.||.++||--
T Consensus 472 i~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 472 IFAGSGDGTAHVYYD 486 (641)
T ss_pred eeeecCCCceEEEEC
Confidence 999999999998743
No 81
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.2e-27 Score=194.89 Aligned_cols=317 Identities=16% Similarity=0.163 Sum_probs=247.1
Q ss_pred CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
|+.++++.-.+++++ ..++..|.+|.+.+.-++..- ..+.+.+++.|.+.+||.+++|.++..+.
T Consensus 123 ~tsrivssFk~~t~~-----------~~lvre~~GHkDGiW~Vaa~~----tqpi~gtASADhTA~iWs~Esg~CL~~Y~ 187 (481)
T KOG0300|consen 123 PTSRIVSSFKDGTVK-----------FRLVRELEGHKDGIWHVAADS----TQPICGTASADHTARIWSLESGACLATYT 187 (481)
T ss_pred CcchheeeecCCcee-----------Eeehhhhcccccceeeehhhc----CCcceeecccccceeEEeeccccceeeec
Confidence 445566666666533 156677899999866555433 23478999999999999999999999987
Q ss_pred ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc-------------------------c-
Q 014154 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV-------------------------S- 146 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~-------------------------~- 146 (430)
+| .+.+.++.+.+... .+++++.|++..||..+..-. .
T Consensus 188 GH--------~GSVNsikfh~s~~--------L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d 251 (481)
T KOG0300|consen 188 GH--------TGSVNSIKFHNSGL--------LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTD 251 (481)
T ss_pred cc--------ccceeeEEeccccc--------eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccc
Confidence 74 45788888877543 889999999999998432111 0
Q ss_pred -c-cCCCcceEEee---ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEE
Q 014154 147 -A-ESSCSTVKSWN---VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF 221 (430)
Q Consensus 147 -~-~~~~~~i~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 221 (430)
+ .++..+|++-- ..|...|.+..|-..++.+++++.|.+..+||+++++.+..+.+|. ...+.+.-
T Consensus 252 ~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd---------~ELtHcst 322 (481)
T KOG0300|consen 252 SSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHD---------SELTHCST 322 (481)
T ss_pred cccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcc---------hhcccccc
Confidence 0 11112333221 1456778888898899999999999999999999999999988876 44566666
Q ss_pred eecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe-EEeeeeCCC
Q 014154 222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK-LLGCFIGKC 300 (430)
Q Consensus 222 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~ 300 (430)
+|..+++++.+.|.+.++||++..-..+..|++|...|+++.|..+. .+++|+.|.+|++||+++.+ ++.++..
T Consensus 323 --HptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRt-- 397 (481)
T KOG0300|consen 323 --HPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRT-- 397 (481)
T ss_pred --CCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeec--
Confidence 78899999999999999999997666688999999999999998665 78899999999999999765 5777776
Q ss_pred CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEE---eeccccceEEeeeccccccc---cccCCCCceEecCC
Q 014154 301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVF---LKQHLNEVVFDSAFADKEVA---NAAADAPMLEIQNG 374 (430)
Q Consensus 301 ~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~---~~~~~d~~i~~~~~ 374 (430)
.++++.++.+..+++++.--.+..|++||++. ..+..++ -.+| ...|.+++|..+... ++++.|..+.-|..
T Consensus 398 dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG-~RlaRlPrtsRqgH-rRMV~c~AW~eehp~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 398 DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG-NRLARLPRTSRQGH-RRMVTCCAWLEEHPACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred CCccceeEeecCCceEEeccCCceEEEEecCC-CccccCCccccccc-ceeeeeeeccccCcccccccccccceeeeeEe
Confidence 67899999998888999998899999999974 4444332 3466 677899999877654 88999999999987
Q ss_pred CC
Q 014154 375 ND 376 (430)
Q Consensus 375 ~~ 376 (430)
+.
T Consensus 476 n~ 477 (481)
T KOG0300|consen 476 NT 477 (481)
T ss_pred cc
Confidence 65
No 82
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.5e-27 Score=225.24 Aligned_cols=295 Identities=14% Similarity=0.110 Sum_probs=229.1
Q ss_pred cceeeec--CCCceEEEEccCCC-------CCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCC
Q 014154 15 LRALTFD--SLGLIKVIEARGEH-------GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG 85 (430)
Q Consensus 15 ~~l~t~~--~dg~i~vw~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~ 85 (430)
.+++||+ .||.++||+.+.-- ..+++.+.+...|.+.+.|+.| +|||+|||+|+.|+.|.||....
T Consensus 26 ~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~----S~dG~~lAsGSDD~~v~iW~~~~- 100 (942)
T KOG0973|consen 26 VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRF----SPDGSYLASGSDDRLVMIWERAE- 100 (942)
T ss_pred eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEE----CCCCCeEeeccCcceEEEeeecc-
Confidence 6889999 99999999875410 1246677777889999776666 66888999999999999998753
Q ss_pred cccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCce
Q 014154 86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI 165 (430)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i 165 (430)
......- =++.....+.-|. .+.++. .|...|
T Consensus 101 ~~~~~~f----------------------------------gs~g~~~~vE~wk-------------~~~~l~-~H~~DV 132 (942)
T KOG0973|consen 101 IGSGTVF----------------------------------GSTGGAKNVESWK-------------VVSILR-GHDSDV 132 (942)
T ss_pred cCCcccc----------------------------------cccccccccceee-------------EEEEEe-cCCCcc
Confidence 1111000 0000111122222 233333 588999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECC
Q 014154 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 245 (430)
..++|+|++.+|++++.|++|.+||..+.+.+..+..|. ..|..+.| .|-|++|++-+.|++|++|.+.
T Consensus 133 ~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~---------s~VKGvs~--DP~Gky~ASqsdDrtikvwrt~ 201 (942)
T KOG0973|consen 133 LDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ---------SLVKGVSW--DPIGKYFASQSDDRTLKVWRTS 201 (942)
T ss_pred ceeccCCCccEEEEecccceEEEEccccceeeeeeeccc---------ccccceEE--CCccCeeeeecCCceEEEEEcc
Confidence 999999999999999999999999999999999999987 77999999 8999999999999999999977
Q ss_pred CCCcceEEEeec------CCCeEEEEecCCCCEEEEEeC----CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCC---
Q 014154 246 AQRRPVMSFDFR------ETPIKAVAEEPDSFNIYIGNG----SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT--- 312 (430)
Q Consensus 246 ~~~~~~~~~~~~------~~~i~~~~~sp~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~--- 312 (430)
+.. ..+.+..+ .....-+.|||||++|++... -..+.|.+-.+.+.-..|.|| .+++.++.|+|.
T Consensus 202 dw~-i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH-~~p~evvrFnP~lfe 279 (942)
T KOG0973|consen 202 DWG-IEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGH-SAPVEVVRFNPKLFE 279 (942)
T ss_pred cce-eeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecC-CCceEEEEeChHHhc
Confidence 633 34454443 235678999999999998742 346889888888888899999 889999999972
Q ss_pred --CC------------eEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154 313 --LP------------IIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 313 --~~------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~ 377 (430)
.. .+|+|+.|++|.||.....+++..+ ..-....|.+++|+|||.. ++++.||+|.++.+.+.
T Consensus 280 ~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi--~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 280 RNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI--HNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred cccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh--hhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 11 6899999999999999888887663 3334566899999999998 88999999999988653
No 83
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1.2e-26 Score=216.05 Aligned_cols=204 Identities=11% Similarity=0.129 Sum_probs=166.1
Q ss_pred cCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe-------eeEeeCCCCCCCCCCcCCcceeEEEEeecCCC-CEE
Q 014154 160 CASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCE-------KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKF 230 (430)
Q Consensus 160 ~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l 230 (430)
.|.+.|.+++|+| ++++|++|+.|++|++||+.++. .+..+..|. ..|.+++| +|++ ++|
T Consensus 73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~---------~~V~~l~f--~P~~~~iL 141 (493)
T PTZ00421 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT---------KKVGIVSF--HPSAMNVL 141 (493)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCC---------CcEEEEEe--CcCCCCEE
Confidence 6789999999999 88999999999999999997642 234444443 77999999 6764 699
Q ss_pred EEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEec
Q 014154 231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH 310 (430)
Q Consensus 231 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~ 310 (430)
++++.|+.|+|||+.++. .+..+.+|...|.+++|+|++.+|++++.|+.|++||+++++.+..+.+|....+..+.|+
T Consensus 142 aSgs~DgtVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~ 220 (493)
T PTZ00421 142 ASAGADMVVNVWDVERGK-AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWA 220 (493)
T ss_pred EEEeCCCEEEEEECCCCe-EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEc
Confidence 999999999999999865 4778888999999999999999999999999999999999999999988833345678899
Q ss_pred CCCCeEEEEe----CCCcEEEEECCCCc-eeeEEEeeccccceEEeeeccccccc-cccC-CCCceEecCCCCC
Q 014154 311 PTLPIIASCG----LDSYLRFWDIKTRQ-LLSAVFLKQHLNEVVFDSAFADKEVA-NAAA-DAPMLEIQNGNDT 377 (430)
Q Consensus 311 ~~~~~l~s~~----~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~-~d~~i~~~~~~~~ 377 (430)
+++..+++++ .|+.|++||+++.. ++.. ...+....+....|++++.+ ++++ .|+.|++|+....
T Consensus 221 ~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~--~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 221 KRKDLIITLGCSKSQQRQIMLWDTRKMASPYST--VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred CCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE--eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 9888877765 47899999998754 3333 22233345567789999988 5555 6999999998753
No 84
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.8e-26 Score=183.42 Aligned_cols=264 Identities=14% Similarity=0.116 Sum_probs=210.0
Q ss_pred CCCCcceeeecCCCceEEEEccCCCCCcceeee--ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccc
Q 014154 11 GCPPLRALTFDSLGLIKVIEARGEHGGVPKVVE--RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR 88 (430)
Q Consensus 11 ~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~ 88 (430)
.|..-+|++|+.|+++++|++... +++. .+.+|.+.+--+++.. +..+++++++.|.+|++||+..++++
T Consensus 29 n~~g~~lasgs~dktv~v~n~e~~-----r~~~~~~~~gh~~svdql~w~~---~~~d~~atas~dk~ir~wd~r~~k~~ 100 (313)
T KOG1407|consen 29 NCDGTKLASGSFDKTVSVWNLERD-----RFRKELVYRGHTDSVDQLCWDP---KHPDLFATASGDKTIRIWDIRSGKCT 100 (313)
T ss_pred cccCceeeecccCCceEEEEecch-----hhhhhhcccCCCcchhhheeCC---CCCcceEEecCCceEEEEEeccCcEE
Confidence 355678999999999999999986 3443 3456777654444333 34468999999999999999999988
Q ss_pred ceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEE
Q 014154 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (430)
Q Consensus 89 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~ 168 (430)
..+..- ...+ .+.|++.. +.++++..+..+...+..... .+..+ .....+..+
T Consensus 101 ~~i~~~--------~eni-~i~wsp~g--------~~~~~~~kdD~it~id~r~~~--------~~~~~--~~~~e~ne~ 153 (313)
T KOG1407|consen 101 ARIETK--------GENI-NITWSPDG--------EYIAVGNKDDRITFIDARTYK--------IVNEE--QFKFEVNEI 153 (313)
T ss_pred EEeecc--------Ccce-EEEEcCCC--------CEEEEecCcccEEEEEecccc--------eeehh--cccceeeee
Confidence 776541 1233 25555544 488888888888887765332 11111 223567788
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC
Q 014154 169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (430)
Q Consensus 169 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (430)
+|+.++++++.....|.|.|......+++..++.|. ....|+.| +|+|++||+|+.|..+.+||+...-
T Consensus 154 ~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~---------snCicI~f--~p~GryfA~GsADAlvSLWD~~ELi 222 (313)
T KOG1407|consen 154 SWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP---------SNCICIEF--DPDGRYFATGSADALVSLWDVDELI 222 (313)
T ss_pred eecCCCCEEEEecCCceEEEEeccccccccccccCC---------cceEEEEE--CCCCceEeeccccceeeccChhHhh
Confidence 898777777777777999999999989999988876 55778888 9999999999999999999999754
Q ss_pred cceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCC
Q 014154 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS 323 (430)
Q Consensus 249 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg 323 (430)
+++.+..+.-+|..+.||.+|++|++|++|..|-|=++.+|..+..++. .++...++|+|...+||-++.|.
T Consensus 223 -C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~--~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 223 -CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC--EGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred -hheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec--cCCceeEEecCCCceeeEEecCC
Confidence 4788888999999999999999999999999999999999999988875 78999999999999999887663
No 85
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=3.7e-27 Score=205.18 Aligned_cols=306 Identities=13% Similarity=0.080 Sum_probs=209.4
Q ss_pred cCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc-ccceeeccCCCCCCCCCCceEEEEEeecCcccccccC
Q 014154 45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (430)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 123 (430)
+.+|+.. +.++.+ .|.|..|++|+.|..|++||+..-. ....|+.+.+ .....|.++.+....
T Consensus 163 l~hgtk~--Vsal~~--Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P----~E~h~i~sl~ys~Tg-------- 226 (641)
T KOG0772|consen 163 LKHGTKI--VSALAV--DPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP----CETHQINSLQYSVTG-------- 226 (641)
T ss_pred ccCCceE--EEEeee--cCCCceeeeccccceEEEEecccccccchhhhccCc----ccccccceeeecCCC--------
Confidence 4445555 555656 7789999999999999999986322 1222332211 122355555554433
Q ss_pred ceEEEEccCCeeEEEEeeecCc-cccCCCcceEEee--ecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCee-eE
Q 014154 124 RTLLTCTTKGKASMRSIEVTKV-SAESSCSTVKSWN--VCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEK-IW 198 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~-~~~~~~~~i~~~~--~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~-~~ 198 (430)
+.+++.+......|++-+-... ...-.|..|+-.. ..|-..++|.+|+| +.+.+++++.||++++||++..+. ..
T Consensus 227 ~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 227 DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred CeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 4677666666677766322111 0001122222111 12446788999999 457889999999999999976443 22
Q ss_pred eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC-cc-eEEEeecCC--CeEEEEecCCCCEEE
Q 014154 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RP-VMSFDFRET--PIKAVAEEPDSFNIY 274 (430)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~-~~~~~~~~~--~i~~~~~sp~~~~l~ 274 (430)
.++..... .....++.++| ++++.+||+|+.||+|.+|+..... .+ ...-..|.. .|+||+||++|++|+
T Consensus 307 Vik~k~~~----g~Rv~~tsC~~--nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 307 VIKTKPAG----GKRVPVTSCAW--NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL 380 (641)
T ss_pred EEeeccCC----CcccCceeeec--CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhh
Confidence 22221111 11246889999 9999999999999999999986432 12 334456765 899999999999999
Q ss_pred EEeCCCcEEEEEccCCe-EEeeeeCCC-CCCeEEEEecCCCCeEEEEe------CCCcEEEEECCCCceeeEEEeecccc
Q 014154 275 IGNGSGDLASVDIRTGK-LLGCFIGKC-SGSIRSIARHPTLPIIASCG------LDSYLRFWDIKTRQLLSAVFLKQHLN 346 (430)
Q Consensus 275 ~~~~d~~i~iwd~~~~~-~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~ 346 (430)
+-+.|+++++||+++.+ ++.+..+-. ..+-+.++|||+.++|++|. ..|.+.+||..+.+.++.+.+. .
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~---~ 457 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS---T 457 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC---C
Confidence 99999999999999764 455544421 23457789999999999985 3578999999999999986543 4
Q ss_pred ceEEeeeccccccc-cccCCCCceEecCCC
Q 014154 347 EVVFDSAFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 347 ~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~ 375 (430)
..|..+.|+|.=.. ++++.||.+++|-.+
T Consensus 458 aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 458 ASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred ceEEEEeecchhhheeeecCCCceEEEECc
Confidence 45789999998655 888899999987443
No 86
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1e-25 Score=209.73 Aligned_cols=281 Identities=11% Similarity=0.028 Sum_probs=200.1
Q ss_pred cceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec-----cCCCCCCCCCCceEEEEEeecCcccccccCceE
Q 014154 52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN-----AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (430)
Q Consensus 52 ~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 126 (430)
+.+...++ ++..+++++.+.....|+...+..+..+.. .....+.+|.+.+.++.|.+... ..+
T Consensus 23 i~~~~~~~----d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~-------~~L 91 (493)
T PTZ00421 23 VTPSTALW----DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDP-------QKL 91 (493)
T ss_pred cccccccC----CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCC-------CEE
Confidence 34444444 433467777777777787644332211111 01112346778898888876443 589
Q ss_pred EEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEeeCCCCC
Q 014154 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK 205 (430)
Q Consensus 127 ~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 205 (430)
++++.|+.+.+|++..... .......+..+. .|...|.+++|+|++ ++|++++.|++|++||+++++.+..+..|.
T Consensus 92 aSgS~DgtIkIWdi~~~~~-~~~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~- 168 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGL-TQNISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS- 168 (493)
T ss_pred EEEeCCCEEEEEecCCCcc-ccccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC-
Confidence 9999999999999864321 001112344443 578899999999975 799999999999999999998888777654
Q ss_pred CCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCC-eEEEEecCCCCEEEEEe----CCC
Q 014154 206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP-IKAVAEEPDSFNIYIGN----GSG 280 (430)
Q Consensus 206 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~sp~~~~l~~~~----~d~ 280 (430)
..|.+++| +|++.+|++++.|+.|++||++++. .+..+.+|... +..+.|.+++..|++++ .|+
T Consensus 169 --------~~V~sla~--spdG~lLatgs~Dg~IrIwD~rsg~-~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr 237 (493)
T PTZ00421 169 --------DQITSLEW--NLDGSLLCTTSKDKKLNIIDPRDGT-IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQR 237 (493)
T ss_pred --------CceEEEEE--ECCCCEEEEecCCCEEEEEECCCCc-EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCC
Confidence 67999999 8899999999999999999999866 47778888654 45677888887877654 478
Q ss_pred cEEEEEccCCe-EEeeeeCCCCCCeEEEEecCCCCeEEEEe-CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccc
Q 014154 281 DLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE 358 (430)
Q Consensus 281 ~i~iwd~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 358 (430)
.|++||+++.. ++.....+....+....|++++.+|++++ .|+.|++||+.+++++.... ......+..++|.|.-
T Consensus 238 ~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~--~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 238 QIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS--YSSVEPHKGLCMMPKW 315 (493)
T ss_pred eEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee--ccCCCCCcceEecccc
Confidence 99999998765 34334333244566778999999998887 59999999999998776532 2223334666666643
Q ss_pred c
Q 014154 359 V 359 (430)
Q Consensus 359 ~ 359 (430)
.
T Consensus 316 ~ 316 (493)
T PTZ00421 316 S 316 (493)
T ss_pred c
Confidence 3
No 87
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=5.1e-27 Score=192.09 Aligned_cols=291 Identities=15% Similarity=0.160 Sum_probs=211.4
Q ss_pred cCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCC----cccceeeccCCCCCCCCCCceEEEEEeecCccccc
Q 014154 45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG----DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (430)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 120 (430)
+..|..++.+ ..| +|||.++|+|+.|..|+|.|++.- ++.....+ . ...
T Consensus 108 lt~HK~~cR~--aaf--s~DG~lvATGsaD~SIKildvermlaks~~~em~~~----~---------------~qa---- 160 (430)
T KOG0640|consen 108 LTSHKSPCRA--AAF--SPDGSLVATGSADASIKILDVERMLAKSKPKEMISG----D---------------TQA---- 160 (430)
T ss_pred Eeecccceee--eee--CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccC----C---------------ccc----
Confidence 3457777444 444 778889999999999999998621 11111111 0 000
Q ss_pred ccCceEEEEccCCeeEEEEeeecCc----cccCCCcceEEeeecC------------CCceEEEEEcCCCCEEEEEeCCC
Q 014154 121 SRSRTLLTCTTKGKASMRSIEVTKV----SAESSCSTVKSWNVCA------------SGTIAFSKVDISEKFSLFGGKGV 184 (430)
Q Consensus 121 ~~~~~~~~~~~~g~~~v~~~~~~~~----~~~~~~~~i~~~~~~~------------~~~i~~~~~~~~~~~l~~~~~d~ 184 (430)
.--++-...||...|.++.|.|. ++++.|+++++|+... ...|.++.|+|.|.+|++|....
T Consensus 161 --~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp 238 (430)
T KOG0640|consen 161 --RHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHP 238 (430)
T ss_pred --CCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCC
Confidence 00233333344444444444443 4444445555554432 35799999999999999999999
Q ss_pred eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE-eecC-CCeE
Q 014154 185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRE-TPIK 262 (430)
Q Consensus 185 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~-~~i~ 262 (430)
++++||+++.++........ .|...|+++.+ ++.+++.++++.||.|++||--.+++ +.++ +.|. ..|.
T Consensus 239 ~~rlYdv~T~QcfvsanPd~------qht~ai~~V~Y--s~t~~lYvTaSkDG~IklwDGVS~rC-v~t~~~AH~gsevc 309 (430)
T KOG0640|consen 239 TLRLYDVNTYQCFVSANPDD------QHTGAITQVRY--SSTGSLYVTASKDGAIKLWDGVSNRC-VRTIGNAHGGSEVC 309 (430)
T ss_pred ceeEEeccceeEeeecCccc------ccccceeEEEe--cCCccEEEEeccCCcEEeeccccHHH-HHHHHhhcCCceee
Confidence 99999999988876654322 24478999999 89999999999999999999888665 5544 3453 5799
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC----CCCeEEEEecCCCCeEEEEe-CCCcEEEEECCCCceee
Q 014154 263 AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC----SGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLS 337 (430)
Q Consensus 263 ~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~ 337 (430)
+..|..++++|++.+.|..+++|.+.+++++.++.+.- ..--+...|+....+++.-. ..+.+.-||.+++..+.
T Consensus 310 Sa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~ 389 (430)
T KOG0640|consen 310 SAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVA 389 (430)
T ss_pred eEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhh
Confidence 99999999999999999999999999999999998640 11124456888888877664 34679999999988777
Q ss_pred EEEeeccccceEEeeeccccccc-cccCCCCceEecCCC
Q 014154 338 AVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 338 ~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~ 375 (430)
.+ .-+| .+.+..+.-||.+.. +++++|-..++|-..
T Consensus 390 l~-slgH-n~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 390 LL-SLGH-NGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hc-ccCC-CCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 64 3467 556789999999998 999999999999654
No 88
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=5.4e-27 Score=188.08 Aligned_cols=276 Identities=14% Similarity=0.155 Sum_probs=207.1
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..|++++.|.++.||-..+| +.+-++.+|.+.|.++.+.++ .++|++|+.|.++++||+++|+++..++.-
T Consensus 23 DLlFscaKD~~~~vw~s~nG-----erlGty~GHtGavW~~Did~~----s~~liTGSAD~t~kLWDv~tGk~la~~k~~ 93 (327)
T KOG0643|consen 23 DLLFSCAKDSTPTVWYSLNG-----ERLGTYDGHTGAVWCCDIDWD----SKHLITGSADQTAKLWDVETGKQLATWKTN 93 (327)
T ss_pred cEEEEecCCCCceEEEecCC-----ceeeeecCCCceEEEEEecCC----cceeeeccccceeEEEEcCCCcEEEEeecC
Confidence 57899999999999988777 899999999999988888773 358999999999999999999999888751
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEcc-----CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEE
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-----KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK 169 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~ 169 (430)
.++..+.+.... ..++.++. .+.+.++++...+.-..+.+...++- .+...++.+-
T Consensus 94 ---------~~Vk~~~F~~~g--------n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~--t~~skit~a~ 154 (327)
T KOG0643|consen 94 ---------SPVKRVDFSFGG--------NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP--TPDSKITSAL 154 (327)
T ss_pred ---------CeeEEEeeccCC--------cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec--CCccceeeee
Confidence 123333333221 23333332 33577777765442111222233333 3347899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeEe-eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC
Q 014154 170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (430)
Q Consensus 170 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (430)
|.|.+++|++|..||.|..||++++..+.. ...|. ..|+.+.+ +++..++++++.|.+-++||..+..
T Consensus 155 Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~---------~~Ind~q~--s~d~T~FiT~s~Dttakl~D~~tl~ 223 (327)
T KOG0643|consen 155 WGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHS---------SKINDLQF--SRDRTYFITGSKDTTAKLVDVRTLE 223 (327)
T ss_pred ecccCCEEEEecCCCcEEEEEcccCceeeechhhhc---------cccccccc--cCCcceEEecccCccceeeecccee
Confidence 999999999999999999999999865433 33433 67999999 8999999999999999999999854
Q ss_pred cceEEEeecCCCeEEEEecCCCCEEEEEeCCCc--------------EEEEEccCCeEEeeeeCCCCCCeEEEEecCCCC
Q 014154 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD--------------LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP 314 (430)
Q Consensus 249 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~--------------i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 314 (430)
.+.++.. ..+|++.+++|....++.|+.... .++|++-..+.+..+++| -++|++++|||+|.
T Consensus 224 -v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH-FGPINsvAfhPdGk 300 (327)
T KOG0643|consen 224 -VLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH-FGPINSVAFHPDGK 300 (327)
T ss_pred -eEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc-ccCcceeEECCCCc
Confidence 3555543 579999999998888887764322 122222223456677888 89999999999999
Q ss_pred eEEEEeCCCcEEEEECCC
Q 014154 315 IIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 315 ~l~s~~~dg~i~iwd~~~ 332 (430)
..++|++||.||+.....
T Consensus 301 sYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 301 SYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ccccCCCCceEEEEEecc
Confidence 999999999999986643
No 89
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.2e-26 Score=199.30 Aligned_cols=271 Identities=11% Similarity=0.117 Sum_probs=212.9
Q ss_pred CCCCCCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccc
Q 014154 9 CPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR 88 (430)
Q Consensus 9 ~~~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~ 88 (430)
+|..|..-++|++ -.+.||+..+. ..+..+.-....++ +.+| ..||++||+|+..|.|+|+|+.+...+
T Consensus 35 sp~~P~d~aVt~S--~rvqly~~~~~-----~~~k~~srFk~~v~--s~~f--R~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 35 SPKHPYDFAVTSS--VRVQLYSSVTR-----SVRKTFSRFKDVVY--SVDF--RSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred CCCCCCceEEecc--cEEEEEecchh-----hhhhhHHhhcccee--EEEe--ecCCeEEEccCCcCcEEEeccccHHHH
Confidence 4556666677766 37889998874 44444544455544 4444 668899999999999999997665566
Q ss_pred ceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEE
Q 014154 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (430)
Q Consensus 89 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~ 168 (430)
..+..| ..++..+.+.+... ..+++|+.|..+.+|++... .+...-..|...|.|.
T Consensus 104 R~~~ah--------~apv~~~~f~~~d~-------t~l~s~sDd~v~k~~d~s~a---------~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 104 RQLYAH--------QAPVHVTKFSPQDN-------TMLVSGSDDKVVKYWDLSTA---------YVQAELSGHTDYVRCG 159 (487)
T ss_pred HHHhhc--------cCceeEEEecccCC-------eEEEecCCCceEEEEEcCCc---------EEEEEecCCcceeEee
Confidence 666654 33555455544444 57888999999999997643 3444445788999999
Q ss_pred EEcC-CCCEEEEEeCCCeEEEEECCCC-eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC
Q 014154 169 KVDI-SEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 169 ~~~~-~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 246 (430)
+++| ++..+++|+.||.|++||++.. ..+.++... .+|..+.| -|.|.+|++++ ...|++||+.+
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg----------~pVe~vl~--lpsgs~iasAg-Gn~vkVWDl~~ 226 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHG----------CPVESVLA--LPSGSLIASAG-GNSVKVWDLTT 226 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCCceeEEecCC----------CceeeEEE--cCCCCEEEEcC-CCeEEEEEecC
Confidence 9999 4568899999999999999875 555555432 67889999 57888999876 55899999998
Q ss_pred CCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEE
Q 014154 247 QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLR 326 (430)
Q Consensus 247 ~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~ 326 (430)
+.+.+..+..|...|+|+.+..++..|++|+-|+.|++||+.+.+.++.+.- .++|.+++.+|+++.++.|..||.+.
T Consensus 227 G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~--~~pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 227 GGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY--PGPVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred CceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec--ccceeeEEecCCCceEEEecccceee
Confidence 7766666666999999999999999999999999999999999999988886 68999999999999999999999887
Q ss_pred EEE
Q 014154 327 FWD 329 (430)
Q Consensus 327 iwd 329 (430)
+=+
T Consensus 305 ~rr 307 (487)
T KOG0310|consen 305 IRR 307 (487)
T ss_pred eeh
Confidence 653
No 90
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.3e-25 Score=210.04 Aligned_cols=202 Identities=10% Similarity=0.109 Sum_probs=158.7
Q ss_pred cCCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCee--------eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCE-
Q 014154 160 CASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEK--------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK- 229 (430)
Q Consensus 160 ~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~- 229 (430)
.|...|.+++|+|+ +++|++|+.|++|++||+.++.. +..+..| ...|.+++| +|++..
T Consensus 72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH---------~~~V~sVaf--~P~g~~i 140 (568)
T PTZ00420 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH---------KKKISIIDW--NPMNYYI 140 (568)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC---------CCcEEEEEE--CCCCCeE
Confidence 57789999999996 78999999999999999976421 1223333 377999999 787765
Q ss_pred EEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEE---
Q 014154 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS--- 306 (430)
Q Consensus 230 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~--- 306 (430)
|++++.|+.|++||++++.. +..+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+.++.+| .+.+..
T Consensus 141 LaSgS~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH-~g~~~s~~v 217 (568)
T PTZ00420 141 MCSSGFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH-DGGKNTKNI 217 (568)
T ss_pred EEEEeCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc-cCCceeEEE
Confidence 57899999999999998664 45554 5578999999999999999999999999999999999999998 554432
Q ss_pred --EEecCCCCeEEEEeCCC----cEEEEECCC-CceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 307 --IARHPTLPIIASCGLDS----YLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 307 --i~~~~~~~~l~s~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
..|++++.+|++++.|+ .|+|||+++ .+++..+.+..+ ...+......++|.+ ++|..|+.|++|+...
T Consensus 218 ~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~-~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 218 WIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA-SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred EeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC-ccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 33568989999988774 799999995 667766544444 233333344556777 8899999999999864
No 91
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=2.2e-26 Score=197.80 Aligned_cols=254 Identities=17% Similarity=0.181 Sum_probs=192.5
Q ss_pred CCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc---cccCCCcceEEeeecCCCceEEEEEcC-CCCEEE
Q 014154 103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV---SAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSL 178 (430)
Q Consensus 103 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~ 178 (430)
.+.+..++..+... ..+++.+..+.+.||+....+. .++...-.+++. .|.+.-..++|++ ..-.|+
T Consensus 124 ~gEVnRaRymPQnp-------~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~--gH~~eg~glsWn~~~~g~Ll 194 (422)
T KOG0264|consen 124 DGEVNRARYMPQNP-------NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLK--GHEKEGYGLSWNRQQEGTLL 194 (422)
T ss_pred CccchhhhhCCCCC-------cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEE--eecccccccccccccceeEe
Confidence 34444445555443 5667778889999999887765 222222223332 4555567799988 456889
Q ss_pred EEeCCCeEEEEECCCCee-------eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC-CCcc
Q 014154 179 FGGKGVEVNVWDLDKCEK-------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-QRRP 250 (430)
Q Consensus 179 ~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~ 250 (430)
+++.|++|++||+..... ...+.. |...|..++|+ .-+..+|++++.|+.+.|||+++ ..++
T Consensus 195 s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~---------h~~~VeDV~~h-~~h~~lF~sv~dd~~L~iwD~R~~~~~~ 264 (422)
T KOG0264|consen 195 SGSDDHTICLWDINAESKEDKVVDPKTIFSG---------HEDVVEDVAWH-PLHEDLFGSVGDDGKLMIWDTRSNTSKP 264 (422)
T ss_pred eccCCCcEEEEeccccccCCccccceEEeec---------CCcceehhhcc-ccchhhheeecCCCeEEEEEcCCCCCCC
Confidence 999999999999975332 222333 34779999996 34567899999999999999995 3456
Q ss_pred eEEEeecCCCeEEEEecCC-CCEEEEEeCCCcEEEEEccCCe-EEeeeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEE
Q 014154 251 VMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRF 327 (430)
Q Consensus 251 ~~~~~~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~i 327 (430)
.....+|.+.|.|++|+|- +..||+|+.|++|.+||+|+.. ++..+.+| ...|.++.|+|.. ..|++++.|+.+.|
T Consensus 265 ~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H-~dev~~V~WSPh~etvLASSg~D~rl~v 343 (422)
T KOG0264|consen 265 SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH-EDEVFQVEWSPHNETVLASSGTDRRLNV 343 (422)
T ss_pred cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC-CcceEEEEeCCCCCceeEecccCCcEEE
Confidence 7788899999999999995 5778899999999999999754 58889998 9999999999965 68899999999999
Q ss_pred EECCCCcee------------eEEEeeccccceEEeeeccccccc--cccCCCCceEecCCCCC
Q 014154 328 WDIKTRQLL------------SAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 328 wd~~~~~~~------------~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~~ 377 (430)
||+..-... -.|...|| ...|....|+|+... ++++.|+.++||.....
T Consensus 344 WDls~ig~eq~~eda~dgppEllF~HgGH-~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 344 WDLSRIGEEQSPEDAEDGPPELLFIHGGH-TAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred EeccccccccChhhhccCCcceeEEecCc-ccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 999642211 11335677 555799999999987 88999999999998743
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.4e-25 Score=191.58 Aligned_cols=270 Identities=11% Similarity=0.148 Sum_probs=219.9
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..++||+.|..+.++|...+ +++..|.+|... +..+-+ +|+...+++++.|-.|+||..........
T Consensus 232 ~~ilTGG~d~~av~~d~~s~-----q~l~~~~Gh~kk--i~~v~~--~~~~~~v~~aSad~~i~vws~~~~s~~~~---- 298 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSN-----QILATLKGHTKK--ITSVKF--HKDLDTVITASADEIIRVWSVPLSSEPTS---- 298 (506)
T ss_pred CcceecCCCCceEEEecchh-----hhhhhccCcceE--EEEEEe--ccchhheeecCCcceEEeeccccccCccc----
Confidence 67899999999999999998 899999999888 555555 77777899999999999999866553333
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeee-cCCCceEEEEEcCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKVDIS 173 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~-~~~~~i~~~~~~~~ 173 (430)
..+++.+++.+...+... ++++++.++...+.++.... .+..... ...-.+++.+|+|+
T Consensus 299 ----~~~h~~~V~~ls~h~tge--------YllsAs~d~~w~Fsd~~~g~--------~lt~vs~~~s~v~~ts~~fHpD 358 (506)
T KOG0289|consen 299 ----SRPHEEPVTGLSLHPTGE--------YLLSASNDGTWAFSDISSGS--------QLTVVSDETSDVEYTSAAFHPD 358 (506)
T ss_pred ----cccccccceeeeeccCCc--------EEEEecCCceEEEEEccCCc--------EEEEEeeccccceeEEeeEcCC
Confidence 235667888777766654 99999999998888876443 2332222 23356899999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014154 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (430)
Q Consensus 174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 253 (430)
|..|.+|..|+.|++||+.....+..+.+|. +.|..++| +.+|.+|++++.|+.|++||++..+. ..+
T Consensus 359 gLifgtgt~d~~vkiwdlks~~~~a~Fpght---------~~vk~i~F--sENGY~Lat~add~~V~lwDLRKl~n-~kt 426 (506)
T KOG0289|consen 359 GLIFGTGTPDGVVKIWDLKSQTNVAKFPGHT---------GPVKAISF--SENGYWLATAADDGSVKLWDLRKLKN-FKT 426 (506)
T ss_pred ceEEeccCCCceEEEEEcCCccccccCCCCC---------CceeEEEe--ccCceEEEEEecCCeEEEEEehhhcc-cce
Confidence 9999999999999999999988888887765 88999999 89999999999999999999997553 555
Q ss_pred Eeec-CCCeEEEEecCCCCEEEEEeCCCcEEEEEcc--CCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154 254 FDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIR--TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 254 ~~~~-~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~ 330 (430)
+... ...+.++.|.+.|.+|++++.|=.|++++-. +.+++..+..| .+..+++.|....++++++|.|..++++.+
T Consensus 427 ~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~-sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 427 IQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH-SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc-ccccceeeecccceEEeeccchhheEEeec
Confidence 5443 2479999999999999999888777777643 45667777777 778899999999999999999999988764
No 93
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.2e-25 Score=191.67 Aligned_cols=300 Identities=18% Similarity=0.134 Sum_probs=228.8
Q ss_pred eeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccce-eec-------cCCCCCC--CCCCceEEEEE
Q 014154 42 VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA-ISN-------AGDSGAQ--PEDDGIVGLHL 111 (430)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~-------~~~~~~~--~~~~~i~~~~~ 111 (430)
...+..|..++.++++ +|++.++++++.+|+|.=|++.+++.... ++. ..+.... .|...+.++.+
T Consensus 135 ~~~~~~H~~s~~~val----s~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av 210 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVAL----SPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV 210 (479)
T ss_pred ceeeccccCcceEEEe----eccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE
Confidence 3456678888666665 55677999999999999999998875422 111 1122222 45566777777
Q ss_pred eecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 014154 112 FKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDL 191 (430)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~ 191 (430)
.+... +++++..+..+.||+..... .++.|. .|.+.|.+++|-.....|++++.|..|++|++
T Consensus 211 S~Dgk--------ylatgg~d~~v~Iw~~~t~e--------hv~~~~-ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~ 273 (479)
T KOG0299|consen 211 SSDGK--------YLATGGRDRHVQIWDCDTLE--------HVKVFK-GHRGAVSSLAFRKGTSELYSASADRSVKVWSI 273 (479)
T ss_pred cCCCc--------EEEecCCCceEEEecCcccc--------hhhccc-ccccceeeeeeecCccceeeeecCCceEEEeh
Confidence 66554 89999999999999987554 666665 78899999999999999999999999999999
Q ss_pred CCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCC
Q 014154 192 DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF 271 (430)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~ 271 (430)
+....+.++.+|+ +.|..+.. ...++.+-+|+.|+++++|++.. .....+.+|.+.+.|++|-.+ .
T Consensus 274 ~~~s~vetlyGHq---------d~v~~Ida--L~reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In~-~ 339 (479)
T KOG0299|consen 274 DQLSYVETLYGHQ---------DGVLGIDA--LSRERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFIND-E 339 (479)
T ss_pred hHhHHHHHHhCCc---------cceeeech--hcccceEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEecc-c
Confidence 9888888888876 66777776 44566777777999999999965 336788889999999999744 5
Q ss_pred EEEEEeCCCcEEEEEccCCeEEeeeeCCC-----------CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEE
Q 014154 272 NIYIGNGSGDLASVDIRTGKLLGCFIGKC-----------SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVF 340 (430)
Q Consensus 272 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 340 (430)
.+++|+.+|.|.+|++.+.+++.+....| ..+|++++..|...++++|+.+|.|++|-+..+-....+.
T Consensus 340 HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l 419 (479)
T KOG0299|consen 340 HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLL 419 (479)
T ss_pred ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccccee
Confidence 88999999999999999998887765321 1279999999999999999999999999998872211111
Q ss_pred eeccccceEEeeeccccccc--cccCCCCceEecCCCC
Q 014154 341 LKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGND 376 (430)
Q Consensus 341 ~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~ 376 (430)
..-...+.|++++|+++|+. +..+....+--|-...
T Consensus 420 ~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k 457 (479)
T KOG0299|consen 420 YSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLK 457 (479)
T ss_pred eecccccEEEEEEEccCCCEEEEecccccccceeeEee
Confidence 22234667999999999996 4445555555565443
No 94
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.3e-26 Score=204.62 Aligned_cols=331 Identities=14% Similarity=0.143 Sum_probs=243.3
Q ss_pred CCCcc-eeeecCCCceEEEEccCCCCCc-ceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCC--cc
Q 014154 12 CPPLR-ALTFDSLGLIKVIEARGEHGGV-PKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG--DL 87 (430)
Q Consensus 12 ~~~~~-l~t~~~dg~i~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~--~~ 87 (430)
-|..+ |+||+.||.|++|+........ ...+..+..|.+.+.-++++. +|+.|++++.|-+|++|+...+ -+
T Consensus 34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~----~~~tlIS~SsDtTVK~W~~~~~~~~c 109 (735)
T KOG0308|consen 34 APNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG----NGKTLISASSDTTVKVWNAHKDNTFC 109 (735)
T ss_pred CCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc----CCCceEEecCCceEEEeecccCcchh
Confidence 34566 9999999999999987642111 124667788999888777776 3457999999999999999766 34
Q ss_pred cceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc-cccCCCcceEEeee--cCCCc
Q 014154 88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV-SAESSCSTVKSWNV--CASGT 164 (430)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~-~~~~~~~~i~~~~~--~~~~~ 164 (430)
+.++.. |.+.+.++....... ..+++|+.|+.+.+|++...+. ..++ ...+..-.. .+...
T Consensus 110 ~stir~--------H~DYVkcla~~ak~~-------~lvaSgGLD~~IflWDin~~~~~l~~s-~n~~t~~sl~sG~k~s 173 (735)
T KOG0308|consen 110 MSTIRT--------HKDYVKCLAYIAKNN-------ELVASGGLDRKIFLWDINTGTATLVAS-FNNVTVNSLGSGPKDS 173 (735)
T ss_pred Hhhhhc--------ccchheeeeecccCc-------eeEEecCCCccEEEEEccCcchhhhhh-ccccccccCCCCCccc
Confidence 444443 456888777743333 5899999999999999986543 1111 111111111 45578
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEEC
Q 014154 165 IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT 244 (430)
Q Consensus 165 i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 244 (430)
|.+++.++.+..|++|+.++.|++||.++++.+..+.+|. ..|.++.. +++|..+++++.||+|++||+
T Consensus 174 iYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHT---------dNVr~ll~--~dDGt~~ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 174 IYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHT---------DNVRVLLV--NDDGTRLLSASSDGTIRLWDL 242 (735)
T ss_pred eeeeecCCcceEEEecCcccceEEeccccccceeeeeccc---------cceEEEEE--cCCCCeEeecCCCceEEeeec
Confidence 9999999999999999999999999999999999999887 67999998 899999999999999999999
Q ss_pred CCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE-EeeeeCCCCCCeEEEEecCCCCeEEEEeCCC
Q 014154 245 SAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIASCGLDS 323 (430)
Q Consensus 245 ~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg 323 (430)
...+ ++.++..|...|.++..+|+-..+++|+.||.|..=|+++.+. ...++. ..+|..+..+...+-+-+++.|+
T Consensus 243 gqQr-Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~--daPv~~l~~~~~~~~~WvtTtds 319 (735)
T KOG0308|consen 243 GQQR-CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE--DAPVLKLHLHEHDNSVWVTTTDS 319 (735)
T ss_pred cccc-eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC--CCchhhhhhccccCCceeeeccc
Confidence 9855 5888999999999999999999999999999999999998543 333333 56788887775444456677889
Q ss_pred cEEEEECCCCc-------eeeEEE-ee-------------ccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 324 YLRFWDIKTRQ-------LLSAVF-LK-------------QHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 324 ~i~iwd~~~~~-------~~~~~~-~~-------------~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
.|+-|-..-.. +..... .. -+.+..+...+.-.|-+. ++-...|.+.+||.-.
T Consensus 320 ~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~ 394 (735)
T KOG0308|consen 320 SIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILA 394 (735)
T ss_pred cceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeee
Confidence 99999654211 111000 00 011111233334445555 8888999999999865
No 95
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=4.9e-25 Score=186.04 Aligned_cols=275 Identities=36% Similarity=0.591 Sum_probs=211.1
Q ss_pred eeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCee
Q 014154 56 AASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA 135 (430)
Q Consensus 56 ~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 135 (430)
.+.|...++...|...+.+-.+....+........+.... ..+.....|.++...+ +.+++|..+|.+
T Consensus 60 ~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~--~~~l~~~~I~gl~~~d----------g~Litc~~sG~l 127 (412)
T KOG3881|consen 60 SLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAK--TVSLGTKSIKGLKLAD----------GTLITCVSSGNL 127 (412)
T ss_pred hheeecCCceeEeeccccCcccccccccCCcccccccccc--ccccccccccchhhcC----------CEEEEEecCCcE
Confidence 3333334445544444455556666555444333321100 1122334555544443 799999999999
Q ss_pred EEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC-CEEEEEeCC--CeEEEEECCCCeeeEeeCCCCCCCCCCcC
Q 014154 136 SMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212 (430)
Q Consensus 136 ~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 212 (430)
.+|.+.+... .+..+..| ..+..+..+.-++.. ..+++|+.. ..+.+||++..+++++.+......+++..
T Consensus 128 ~~~~~k~~d~----hss~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrV 201 (412)
T KOG3881|consen 128 QVRHDKSGDL----HSSKLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRV 201 (412)
T ss_pred EEEeccCCcc----ccccceee--ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcccccee
Confidence 9999875431 01122223 334666667777754 455668988 88999999999999999999999999999
Q ss_pred CcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE
Q 014154 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (430)
Q Consensus 213 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 292 (430)
+.|++++.|.+......|++++.-+.|++||.+.+++|+..+...+.+++++...|.+++|++|..-+.+..||++.++.
T Consensus 202 PvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl 281 (412)
T KOG3881|consen 202 PVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL 281 (412)
T ss_pred eeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee
Confidence 99999999963333789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eee-eeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceE
Q 014154 293 LGC-FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVV 349 (430)
Q Consensus 293 ~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 349 (430)
+.. +.+- .+.|++|..+|.+++|+++|-|..|||+|+++.++++.++++.+...++
T Consensus 282 ~g~~~kg~-tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il 338 (412)
T KOG3881|consen 282 LGCGLKGI-TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFIL 338 (412)
T ss_pred eccccCCc-cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEE
Confidence 877 6666 8999999999999999999999999999999999999888877754443
No 96
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=8.5e-24 Score=183.96 Aligned_cols=321 Identities=13% Similarity=0.115 Sum_probs=234.9
Q ss_pred eeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCC
Q 014154 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (430)
Q Consensus 17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 96 (430)
++|. .-|.+.+|++.++ ++.+....|+.++. ..+++++| .++|+ +++|..+|.|.||+..+.+..+...
T Consensus 216 iit~-Gk~H~~Fw~~~~~--~l~k~~~~fek~ek-k~Vl~v~F--~engd-viTgDS~G~i~Iw~~~~~~~~k~~~---- 284 (626)
T KOG2106|consen 216 IITC-GKGHLYFWTLRGG--SLVKRQGIFEKREK-KFVLCVTF--LENGD-VITGDSGGNILIWSKGTNRISKQVH---- 284 (626)
T ss_pred EEEe-CCceEEEEEccCC--ceEEEeeccccccc-eEEEEEEE--cCCCC-EEeecCCceEEEEeCCCceEEeEee----
Confidence 3444 4488999999986 55555566777766 67888888 66776 8899999999999986666554443
Q ss_pred CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc---cccCCCcceE------------------
Q 014154 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV---SAESSCSTVK------------------ 155 (430)
Q Consensus 97 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~~~~i~------------------ 155 (430)
.|++.+.++..... +.++++..|..+..|+-...+. .....-|.++
T Consensus 285 ----aH~ggv~~L~~lr~---------GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~i 351 (626)
T KOG2106|consen 285 ----AHDGGVFSLCMLRD---------GTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFI 351 (626)
T ss_pred ----ecCCceEEEEEecC---------ccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceE
Confidence 35678877777654 6888899999999998433222 0000111111
Q ss_pred ----------EeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154 156 ----------SWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 156 ----------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
+--..|......++.+|+.+++++++.|+.+++|+ ..+.+++.... .++.|+.| +|
T Consensus 352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~----------d~~~~~~f--hp 417 (626)
T KOG2106|consen 352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE----------DPAECADF--HP 417 (626)
T ss_pred EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec----------CceeEeec--cC
Confidence 11123456788899999999999999999999999 55666654433 56889999 78
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC-eEEeeeeCCCCCCe
Q 014154 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSI 304 (430)
Q Consensus 226 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v 304 (430)
.| .++.|+..|...+.|..+ +..+..... +.++++++|+|+|.+||.|+.|+.|+||-+... .....+..++.++|
T Consensus 418 sg-~va~Gt~~G~w~V~d~e~-~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~i 494 (626)
T KOG2106|consen 418 SG-VVAVGTATGRWFVLDTET-QDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPI 494 (626)
T ss_pred cc-eEEEeeccceEEEEeccc-ceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCcee
Confidence 88 999999999999999998 333443333 789999999999999999999999999988754 44444444446899
Q ss_pred EEEEecCCCCeEEEEeCCCcEEEEECCCCcee--------------eEEE-eeccccceEEeeeccccccc-cccCCCCc
Q 014154 305 RSIARHPTLPIIASCGLDSYLRFWDIKTRQLL--------------SAVF-LKQHLNEVVFDSAFADKEVA-NAAADAPM 368 (430)
Q Consensus 305 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------------~~~~-~~~~~~~~v~~~~~s~~g~~-~~~~~d~~ 368 (430)
+.+.||+|+++|.+-+.|-.|..|....-..+ --|. +.+..+..+..++-+.++++ +++.+.|.
T Consensus 495 thLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~ 574 (626)
T KOG2106|consen 495 THLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGK 574 (626)
T ss_pred EEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCce
Confidence 99999999999999999999999954321111 0010 11222444567778888888 88889999
Q ss_pred eEecCCCCCc
Q 014154 369 LEIQNGNDTQ 378 (430)
Q Consensus 369 i~~~~~~~~~ 378 (430)
|++|.++-..
T Consensus 575 v~lf~yPc~s 584 (626)
T KOG2106|consen 575 VHLFSYPCSS 584 (626)
T ss_pred EEEEccccCC
Confidence 9999987543
No 97
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=2.9e-25 Score=190.91 Aligned_cols=246 Identities=16% Similarity=0.198 Sum_probs=182.1
Q ss_pred ceeEEeecCCeEEEecCCCCcccceeec-cCC-CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeec
Q 014154 66 PLLAVARKNGLTDILNPLNGDLRVAISN-AGD-SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~ 143 (430)
..+|+++..+.|.|||..+-.-.....+ +.+ ....+|.+.-.++.|..... +.+++++.++.+.+|++...
T Consensus 138 ~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~-------g~Lls~~~d~~i~lwdi~~~ 210 (422)
T KOG0264|consen 138 NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQE-------GTLLSGSDDHTICLWDINAE 210 (422)
T ss_pred cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccc-------eeEeeccCCCcEEEEecccc
Confidence 4677788999999999864322221110 000 00112222222345444444 79999999999999999765
Q ss_pred CccccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCC--CeeeEeeCCCCCCCCCCcCCcceeEEE
Q 014154 144 KVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDK--CEKIWTAKPPPKNSLGIFTPTWFTSAA 220 (430)
Q Consensus 144 ~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~ 220 (430)
+.. ........++ ..|...|..++|++ +..++++++.|+.+.|||+++ .+.......| ...|.|++
T Consensus 211 ~~~-~~~~~p~~~~-~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah---------~~~vn~~~ 279 (422)
T KOG0264|consen 211 SKE-DKVVDPKTIF-SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH---------SAEVNCVA 279 (422)
T ss_pred ccC-CccccceEEe-ecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccccc---------CCceeEEE
Confidence 431 1112233344 47889999999999 667888999999999999995 3333333343 37899999
Q ss_pred EeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCC---------
Q 014154 221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG--------- 290 (430)
Q Consensus 221 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~--------- 290 (430)
|. +.++..||+|+.|++|++||+|+...++..+.+|...|.+|.|+|.. ..|++++.|+.+.+||+..-
T Consensus 280 fn-p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda 358 (422)
T KOG0264|consen 280 FN-PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA 358 (422)
T ss_pred eC-CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence 95 34677999999999999999999888999999999999999999976 67888899999999998642
Q ss_pred -----eEEeeeeCCCCCCeEEEEecCCCCe-EEEEeCCCcEEEEECC
Q 014154 291 -----KLLGCFIGKCSGSIRSIARHPTLPI-IASCGLDSYLRFWDIK 331 (430)
Q Consensus 291 -----~~~~~~~~~~~~~v~~i~~~~~~~~-l~s~~~dg~i~iwd~~ 331 (430)
+++..-.|| ...|..+.|+|+..+ |++.+.|+.+.||...
T Consensus 359 ~dgppEllF~HgGH-~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 359 EDGPPELLFIHGGH-TAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccCCcceeEEecCc-ccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 233445566 999999999999875 6778899999999975
No 98
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=3.3e-25 Score=200.22 Aligned_cols=285 Identities=15% Similarity=0.152 Sum_probs=215.7
Q ss_pred CCcceeeecCCCceEEEEccCCCCCcc-----------eee---------e--ecCC--------CCCCcceeeeeecCC
Q 014154 13 PPLRALTFDSLGLIKVIEARGEHGGVP-----------KVV---------E--RWGD--------PHSSNCVLAASIDDS 62 (430)
Q Consensus 13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~-----------~~~---------~--~~~~--------~~~~~~~~~~~~~~~ 62 (430)
|+..++|++.||+||+|++.....+.. +.. . .... -.....+-+++. +
T Consensus 391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~v--S 468 (1080)
T KOG1408|consen 391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAV--S 468 (1080)
T ss_pred CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEE--C
Confidence 667799999999999999986310000 000 0 0000 112233445666 8
Q ss_pred CCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeee
Q 014154 63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (430)
Q Consensus 63 p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~ 142 (430)
|+|++||+|..-|.|+||++.+-+.+..++. |+..|.++.+....-.. ..+++++.|..+.|+++..
T Consensus 469 p~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eA--------HesEilcLeyS~p~~~~-----kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 469 PDGQHLASGDRGGNLRVYDLQELEYTCFMEA--------HESEILCLEYSFPVLTN-----KLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred CCcceecccCccCceEEEEehhhhhhhheec--------ccceeEEEeecCchhhh-----HhhhhccCCceEEEEeccc
Confidence 8999999999999999999988777766655 45688888876654322 5788899999999999875
Q ss_pred cCccccCCCcceEEeeecCCCceEEEEEcCCC--CEEEEEeCCCeEEEEECCC----CeeeEeeCCCCCCCCCCcCCcce
Q 014154 143 TKVSAESSCSTVKSWNVCASGTIAFSKVDISE--KFSLFGGKGVEVNVWDLDK----CEKIWTAKPPPKNSLGIFTPTWF 216 (430)
Q Consensus 143 ~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~v 216 (430)
.-. .+...+ .|...|+++.|..++ ..+++++.|..|. |+... +... .-..+. .....+
T Consensus 536 ny~-------l~qtld-~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f-~r~t~t------~~ktTl 599 (1080)
T KOG1408|consen 536 NYD-------LVQTLD-GHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLF-PRHTQT------LSKTTL 599 (1080)
T ss_pred ccc-------hhhhhc-ccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceec-cccccc------cccceE
Confidence 543 233333 578899999998877 7889999997665 44332 2111 111110 011457
Q ss_pred eEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee---cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEE
Q 014154 217 TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL 293 (430)
Q Consensus 217 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~ 293 (430)
..++. .|...++++++.|..|+|||+.+++. ...|++ |++...-+...|.|.||++.+.|.++.+||+.+++++
T Consensus 600 YDm~V--dp~~k~v~t~cQDrnirif~i~sgKq-~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcv 676 (1080)
T KOG1408|consen 600 YDMAV--DPTSKLVVTVCQDRNIRIFDIESGKQ-VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECV 676 (1080)
T ss_pred EEeee--CCCcceEEEEecccceEEEeccccce-eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhh
Confidence 88888 88999999999999999999999775 777765 5677788889999999999999999999999999999
Q ss_pred eeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154 294 GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 294 ~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~ 332 (430)
.++.+| ...|+.+.|.+|-+.|++.+.||.|.||.+..
T Consensus 677 A~m~GH-sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 677 AQMTGH-SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhhcCc-chheeeeeecccchhheeecCCceEEEEECch
Confidence 999999 89999999999999999999999999999854
No 99
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=1.1e-25 Score=195.58 Aligned_cols=285 Identities=13% Similarity=0.088 Sum_probs=220.2
Q ss_pred CCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEE
Q 014154 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL 127 (430)
Q Consensus 48 ~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 127 (430)
|..-|+.++++. ..++++||+. |.|+|||+.... .... +..+.....++.|.+..+++.. ..++
T Consensus 418 HGEvVcAvtIS~----~trhVyTgGk-gcVKVWdis~pg--~k~P-vsqLdcl~rdnyiRSckL~pdg--------rtLi 481 (705)
T KOG0639|consen 418 HGEVVCAVTISN----PTRHVYTGGK-GCVKVWDISQPG--NKSP-VSQLDCLNRDNYIRSCKLLPDG--------RTLI 481 (705)
T ss_pred cCcEEEEEEecC----CcceeEecCC-CeEEEeeccCCC--CCCc-cccccccCcccceeeeEecCCC--------ceEE
Confidence 555555555543 3467899876 889999995331 1111 1122222334566666666654 4889
Q ss_pred EEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCC
Q 014154 128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS 207 (430)
Q Consensus 128 ~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 207 (430)
+++...++.||+++.... .|+.--.........++++|+.+..++++.||.|.|||+.+...++.+++|.
T Consensus 482 vGGeastlsiWDLAapTp-------rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht--- 551 (705)
T KOG0639|consen 482 VGGEASTLSIWDLAAPTP-------RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT--- 551 (705)
T ss_pred eccccceeeeeeccCCCc-------chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC---
Confidence 999999999999975432 3332222233567789999999999999999999999999999999999987
Q ss_pred CCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEc
Q 014154 208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (430)
Q Consensus 208 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 287 (430)
+.+.|+.. +++|..|.+|+-|.+|+.||+++++++ .... ..+.|.++.++|++.+|++|-.++.+.+-..
T Consensus 552 ------DGascIdi--s~dGtklWTGGlDntvRcWDlregrql-qqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~ 621 (705)
T KOG0639|consen 552 ------DGASCIDI--SKDGTKLWTGGLDNTVRCWDLREGRQL-QQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHT 621 (705)
T ss_pred ------CCceeEEe--cCCCceeecCCCccceeehhhhhhhhh-hhhh-hhhhheecccCCCccceeeecccCcEEEEec
Confidence 77899999 899999999999999999999987652 2222 2368999999999999999999999988776
Q ss_pred cCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCC
Q 014154 288 RTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADA 366 (430)
Q Consensus 288 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d 366 (430)
. +...+.+..| .+-|.++.|.+.|+++++.+.|+.+..|.+.-|..+... .....|.++..|-|.++ ++|+.|
T Consensus 622 s-kp~kyqlhlh-eScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs----kE~SsVlsCDIS~ddkyIVTGSGd 695 (705)
T KOG0639|consen 622 S-KPEKYQLHLH-ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDISFDDKYIVTGSGD 695 (705)
T ss_pred C-Cccceeeccc-ccEEEEEEecccCceeeecCchhhhhhccCccccceeec----cccCcceeeeeccCceEEEecCCC
Confidence 3 4445667676 889999999999999999999999999999988887653 22445799999999999 899999
Q ss_pred CceEecCC
Q 014154 367 PMLEIQNG 374 (430)
Q Consensus 367 ~~i~~~~~ 374 (430)
....||..
T Consensus 696 kkATVYeV 703 (705)
T KOG0639|consen 696 KKATVYEV 703 (705)
T ss_pred cceEEEEE
Confidence 88888764
No 100
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=2.2e-23 Score=186.82 Aligned_cols=285 Identities=12% Similarity=0.142 Sum_probs=198.6
Q ss_pred ceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCcee-EEeecCCeEEEecCCCCcccceeecc
Q 014154 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
.+++++.||.|++||+.++ +.+..+..+.. +. .+.+ +|+|+++ ++++.++.|++||..+++.+..+...
T Consensus 3 ~~~s~~~d~~v~~~d~~t~-----~~~~~~~~~~~-~~--~l~~--~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 72 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATL-----EVTRTFPVGQR-PR--GITL--SKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG 72 (300)
T ss_pred EEEEecCCCEEEEEECCCC-----ceEEEEECCCC-CC--ceEE--CCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC
Confidence 3678899999999999886 56666665543 22 3445 6778766 56778899999999888766554321
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceE-EEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~ 173 (430)
.....+.+.+.. ..+ +++..++.+.+|++.... .+..+. ....+.+++|+|+
T Consensus 73 ---------~~~~~~~~~~~g--------~~l~~~~~~~~~l~~~d~~~~~--------~~~~~~--~~~~~~~~~~~~d 125 (300)
T TIGR03866 73 ---------PDPELFALHPNG--------KILYIANEDDNLVTVIDIETRK--------VLAEIP--VGVEPEGMAVSPD 125 (300)
T ss_pred ---------CCccEEEECCCC--------CEEEEEcCCCCeEEEEECCCCe--------EEeEee--CCCCcceEEECCC
Confidence 112234443322 244 445567899999875321 233332 2345678999999
Q ss_pred CCEEEEEeCCC-eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEE-eCCCcEEEEECCCCCcce
Q 014154 174 EKFSLFGGKGV-EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQRRPV 251 (430)
Q Consensus 174 ~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~ 251 (430)
+.+++++..++ .+.+||..+++........ ..+.+++| ++++.+|+++ ..++.|++||+.+++. +
T Consensus 126 g~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~----------~~~~~~~~--s~dg~~l~~~~~~~~~v~i~d~~~~~~-~ 192 (300)
T TIGR03866 126 GKIVVNTSETTNMAHFIDTKTYEIVDNVLVD----------QRPRFAEF--TADGKELWVSSEIGGTVSVIDVATRKV-I 192 (300)
T ss_pred CCEEEEEecCCCeEEEEeCCCCeEEEEEEcC----------CCccEEEE--CCCCCEEEEEcCCCCEEEEEEcCccee-e
Confidence 99999888765 4677899887765543221 23567888 8899887554 4699999999998653 4
Q ss_pred EEEeecC-------CCeEEEEecCCCCEEEEE-eCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEE-eCC
Q 014154 252 MSFDFRE-------TPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC-GLD 322 (430)
Q Consensus 252 ~~~~~~~-------~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-~~d 322 (430)
..+..+. .....++|+|++++++++ +.++.|.+||+++++.+..+.. ...+.+++|+|++.+|+++ +.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~ 270 (300)
T TIGR03866 193 KKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV--GQRVWQLAFTPDEKYLLTTNGVS 270 (300)
T ss_pred eeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe--CCCcceEEECCCCCEEEEEcCCC
Confidence 4443221 123468899999986554 4567899999999888766543 3478999999999998876 468
Q ss_pred CcEEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154 323 SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 323 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~ 356 (430)
+.|++||+.+++.+..+.+. ...+.++++|
T Consensus 271 ~~i~v~d~~~~~~~~~~~~~----~~~~~~~~~~ 300 (300)
T TIGR03866 271 NDVSVIDVAALKVIKSIKVG----RLPWGVVVRP 300 (300)
T ss_pred CeEEEEECCCCcEEEEEEcc----cccceeEeCC
Confidence 99999999999999986532 2237777765
No 101
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=9.7e-25 Score=196.66 Aligned_cols=262 Identities=13% Similarity=0.116 Sum_probs=208.3
Q ss_pred CcceeeecCCCceEEEEccCCCCCcceee--eecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccccee
Q 014154 14 PLRALTFDSLGLIKVIEARGEHGGVPKVV--ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI 91 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~ 91 (430)
+..+++++.||++++|+-..+ +.+ ..+.+|.+-+... .++.. .++-.|++|+.|..|.+|...+..++..+
T Consensus 25 ~~~i~s~sRd~t~~vw~~~~~-----~~l~~~~~~~~~g~i~~~-i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~P~~~L 97 (745)
T KOG0301|consen 25 GVCIISGSRDGTVKVWAKKGK-----QYLETHAFEGPKGFIANS-ICYAE-SDKGRLVVGGMDTTIIVFKLSQAEPLYTL 97 (745)
T ss_pred CeEEeecCCCCceeeeeccCc-----ccccceecccCcceeecc-ceecc-ccCcceEeecccceEEEEecCCCCchhhh
Confidence 356899999999999999775 333 3355566654332 45533 34456999999999999999999999999
Q ss_pred eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc
Q 014154 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 171 (430)
.+|. ..+.++..... +.+++++-|.+++||.+... ...|. .|...|++++.-
T Consensus 98 kgH~--------snVC~ls~~~~---------~~~iSgSWD~TakvW~~~~l----------~~~l~-gH~asVWAv~~l 149 (745)
T KOG0301|consen 98 KGHK--------SNVCSLSIGED---------GTLISGSWDSTAKVWRIGEL----------VYSLQ-GHTASVWAVASL 149 (745)
T ss_pred hccc--------cceeeeecCCc---------CceEecccccceEEecchhh----------hcccC-Ccchheeeeeec
Confidence 8863 35655554332 46899999999999986532 22343 788999999998
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcce
Q 014154 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV 251 (430)
Q Consensus 172 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 251 (430)
|++ .+++|+.|.+|++|.- ++.+.++.+|. +.|+.+++. ++..|++|+.||.|++|++. +. .+
T Consensus 150 ~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHt---------D~VRgL~vl---~~~~flScsNDg~Ir~w~~~-ge-~l 212 (745)
T KOG0301|consen 150 PEN-TYVTGSADKTIKLWKG--GTLLKTFSGHT---------DCVRGLAVL---DDSHFLSCSNDGSIRLWDLD-GE-VL 212 (745)
T ss_pred CCC-cEEeccCcceeeeccC--Cchhhhhccch---------hheeeeEEe---cCCCeEeecCCceEEEEecc-Cc-ee
Confidence 877 8889999999999986 56777777765 789999995 45578999999999999995 35 48
Q ss_pred EEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154 252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 252 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
..+.+|+.-|++++..+++..++++++|++++||+.. .+.+.+... .-.|+++.+-++|. +++|+.||.||||...
T Consensus 213 ~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP-ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 213 LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP-TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC-ccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 8899999999999988888899999999999999976 666666654 56899999999987 6788899999999876
No 102
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.5e-23 Score=172.71 Aligned_cols=270 Identities=14% Similarity=0.157 Sum_probs=210.4
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeec--CCeEEEecCCCCcccceee
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK--NGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~--dg~i~iwd~~~~~~~~~~~ 92 (430)
..|+++++|.+|+|||...+ +.+..+..+.-.+....|.. ++ ..++.++. |.+|++.++.+.+.++.|.
T Consensus 27 ~~litss~dDsl~LYd~~~g-----~~~~ti~skkyG~~~~~Fth--~~--~~~i~sStk~d~tIryLsl~dNkylRYF~ 97 (311)
T KOG1446|consen 27 LLLITSSEDDSLRLYDSLSG-----KQVKTINSKKYGVDLACFTH--HS--NTVIHSSTKEDDTIRYLSLHDNKYLRYFP 97 (311)
T ss_pred CEEEEecCCCeEEEEEcCCC-----ceeeEeecccccccEEEEec--CC--ceEEEccCCCCCceEEEEeecCceEEEcC
Confidence 67899999999999999998 77777777666666666665 32 23455554 8899999999999999977
Q ss_pred ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC
Q 014154 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 172 (430)
+| .+.+..+...+.+. .+++++.|.++++|++.... ..-+... ..-..++|+|
T Consensus 98 GH--------~~~V~sL~~sP~~d--------~FlS~S~D~tvrLWDlR~~~--------cqg~l~~---~~~pi~AfDp 150 (311)
T KOG1446|consen 98 GH--------KKRVNSLSVSPKDD--------TFLSSSLDKTVRLWDLRVKK--------CQGLLNL---SGRPIAAFDP 150 (311)
T ss_pred CC--------CceEEEEEecCCCC--------eEEecccCCeEEeeEecCCC--------CceEEec---CCCcceeECC
Confidence 64 55888888877664 99999999999999988443 1222221 2334579999
Q ss_pred CCCEEEEEeCCCeEEEEECCCC--eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc
Q 014154 173 SEKFSLFGGKGVEVNVWDLDKC--EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (430)
Q Consensus 173 ~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 250 (430)
+|-++|++.....|++||++.- .+...+.... ......+.+.| +|+|++|+.++..+.+++.|.-+|. .
T Consensus 151 ~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~------~~~~ew~~l~F--S~dGK~iLlsT~~s~~~~lDAf~G~-~ 221 (311)
T KOG1446|consen 151 EGLIFALANGSELIKLYDLRSFDKGPFTTFSITD------NDEAEWTDLEF--SPDGKSILLSTNASFIYLLDAFDGT-V 221 (311)
T ss_pred CCcEEEEecCCCeEEEEEecccCCCCceeEccCC------CCccceeeeEE--cCCCCEEEEEeCCCcEEEEEccCCc-E
Confidence 9999999988889999999753 2222222211 11256789999 9999999999999999999999877 4
Q ss_pred eEEEeecCCCe---EEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEE
Q 014154 251 VMSFDFRETPI---KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF 327 (430)
Q Consensus 251 ~~~~~~~~~~i---~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~i 327 (430)
...+..+...- -..+|+||++++++|+.||+|.+|+++++..+..+.+.+..++.++.|+|.-.++++++ ..+.+
T Consensus 222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~f 299 (311)
T KOG1446|consen 222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVF 299 (311)
T ss_pred eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEE
Confidence 77777764322 56789999999999999999999999999999999985588999999999887777764 46778
Q ss_pred EECC
Q 014154 328 WDIK 331 (430)
Q Consensus 328 wd~~ 331 (430)
|=..
T Consensus 300 w~p~ 303 (311)
T KOG1446|consen 300 WLPD 303 (311)
T ss_pred Eecc
Confidence 8654
No 103
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.9e-24 Score=177.12 Aligned_cols=265 Identities=15% Similarity=0.171 Sum_probs=203.2
Q ss_pred ceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccC
Q 014154 53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK 132 (430)
Q Consensus 53 ~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (430)
.+..+.| +|..+.|++++.||++++||+....+...+.. ..++....+.+. ...++++.+
T Consensus 15 ~IS~v~f--~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~---------~~plL~c~F~d~---------~~~~~G~~d 74 (323)
T KOG1036|consen 15 GISSVKF--SPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH---------GAPLLDCAFADE---------STIVTGGLD 74 (323)
T ss_pred ceeeEEE--cCcCCcEEEEeccCcEEEEeccchhhhhheec---------CCceeeeeccCC---------ceEEEeccC
Confidence 3556666 46777899999999999999987766655543 347776666653 478999999
Q ss_pred CeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcC
Q 014154 133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212 (430)
Q Consensus 133 g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 212 (430)
|.++.+++..++. ..+ -.|...|.|+.+.+....+++|+.|++|++||.+.......+...
T Consensus 75 g~vr~~Dln~~~~--------~~i--gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~--------- 135 (323)
T KOG1036|consen 75 GQVRRYDLNTGNE--------DQI--GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG--------- 135 (323)
T ss_pred ceEEEEEecCCcc--------eee--ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC---------
Confidence 9999999986652 111 256789999999999999999999999999999864443333322
Q ss_pred CcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe-ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC-
Q 014154 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG- 290 (430)
Q Consensus 213 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~- 290 (430)
..|.++.. .++.|++|+.+..|.+||+++...+.+... .-...++|+++-|++.=.++++-||.|.+=.+...
T Consensus 136 -kkVy~~~v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~ 210 (323)
T KOG1036|consen 136 -KKVYCMDV----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSE 210 (323)
T ss_pred -ceEEEEec----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCch
Confidence 45777777 688999999999999999998765543222 22457899999998888899999999887555444
Q ss_pred ---eEEeeeeCCC--------CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccccc
Q 014154 291 ---KLLGCFIGKC--------SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV 359 (430)
Q Consensus 291 ---~~~~~~~~~~--------~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 359 (430)
+..+.|+.|. -.+|++|+|+|-...|+||+.||.|.+||+.+.+.+..+ ... ...|..++|+.||.
T Consensus 211 ~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~--~~~-~~SI~slsfs~dG~ 287 (323)
T KOG1036|consen 211 EAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQL--AKY-ETSISSLSFSMDGS 287 (323)
T ss_pred HHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhc--cCC-CCceEEEEeccCCC
Confidence 3344555551 237999999999999999999999999999999888874 333 44479999999999
Q ss_pred c-cccC
Q 014154 360 A-NAAA 364 (430)
Q Consensus 360 ~-~~~~ 364 (430)
. +.++
T Consensus 288 ~LAia~ 293 (323)
T KOG1036|consen 288 LLAIAS 293 (323)
T ss_pred eEEEEe
Confidence 8 4443
No 104
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.8e-24 Score=176.62 Aligned_cols=272 Identities=19% Similarity=0.192 Sum_probs=205.2
Q ss_pred CCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC-CcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCce
Q 014154 47 DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (430)
Q Consensus 47 ~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 125 (430)
.+++.|..++|++ . ...++++|+.||+||+|+++. |...... ...+..++.++.|.+... .
T Consensus 25 pP~DsIS~l~FSP--~-~~~~~~A~SWD~tVR~wevq~~g~~~~ka-------~~~~~~PvL~v~Wsddgs--------k 86 (347)
T KOG0647|consen 25 PPEDSISALAFSP--Q-ADNLLAAGSWDGTVRIWEVQNSGQLVPKA-------QQSHDGPVLDVCWSDDGS--------K 86 (347)
T ss_pred CcccchheeEecc--c-cCceEEecccCCceEEEEEecCCcccchh-------hhccCCCeEEEEEccCCc--------e
Confidence 3567777777766 2 345777899999999999976 4433321 123456888777766554 8
Q ss_pred EEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeeeEeeCCC
Q 014154 126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK--FSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 126 ~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 203 (430)
+++++.|+.+++|++..+ .+...- .|.++|.++.|-+... .|++|+.|.+|+.||.+...++.++..+
T Consensus 87 Vf~g~~Dk~~k~wDL~S~---------Q~~~v~-~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP 156 (347)
T KOG0647|consen 87 VFSGGCDKQAKLWDLASG---------QVSQVA-AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP 156 (347)
T ss_pred EEeeccCCceEEEEccCC---------Ceeeee-ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc
Confidence 899999999999999754 333333 5778999999977555 8999999999999999988888877664
Q ss_pred CCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee-cCCCeEEEEecCCCCEEEEEeCCCcE
Q 014154 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDL 282 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i 282 (430)
+.+.++.. ...+++++..+..|.+|+++++......... -.-.++||+..++....+.|+-.|.+
T Consensus 157 ----------eRvYa~Dv----~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv 222 (347)
T KOG0647|consen 157 ----------ERVYAADV----LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRV 222 (347)
T ss_pred ----------ceeeehhc----cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceE
Confidence 56777666 4568899999999999999875432222221 12357899999998888999999999
Q ss_pred EEEEccCC--eEEeeeeCCC--------CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEee
Q 014154 283 ASVDIRTG--KLLGCFIGKC--------SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDS 352 (430)
Q Consensus 283 ~iwd~~~~--~~~~~~~~~~--------~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 352 (430)
.|..+..+ +.-..|+-|. -..|++|+|+|....|+|+|.||++.+||-.....+.. .+.+ ...|++.
T Consensus 223 ~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~--s~~~-~qpItcc 299 (347)
T KOG0647|consen 223 AIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT--SETH-PQPITCC 299 (347)
T ss_pred EEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhc--cCcC-CCcccee
Confidence 99988775 3344555552 12578899999999999999999999999887777766 3445 5568999
Q ss_pred eccccccc-ccc
Q 014154 353 AFADKEVA-NAA 363 (430)
Q Consensus 353 ~~s~~g~~-~~~ 363 (430)
+|+.+|.+ +.+
T Consensus 300 ~fn~~G~ifaYA 311 (347)
T KOG0647|consen 300 SFNRNGSIFAYA 311 (347)
T ss_pred EecCCCCEEEEE
Confidence 99999998 443
No 105
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=6.2e-25 Score=179.93 Aligned_cols=285 Identities=15% Similarity=0.171 Sum_probs=218.1
Q ss_pred CCcceeeecCCCceEEEEccC-------------CCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEE
Q 014154 13 PPLRALTFDSLGLIKVIEARG-------------EHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDI 79 (430)
Q Consensus 13 ~~~~l~t~~~dg~i~vw~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~i 79 (430)
..+.++||+.|-.|+|.|++. ++...-.++.++..|...|..+.| +|....|++|+.|++|++
T Consensus 123 DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F----HPre~ILiS~srD~tvKl 198 (430)
T KOG0640|consen 123 DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF----HPRETILISGSRDNTVKL 198 (430)
T ss_pred CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee----cchhheEEeccCCCeEEE
Confidence 347788999999999999872 111122577888899999776655 777889999999999999
Q ss_pred ecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeee
Q 014154 80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV 159 (430)
Q Consensus 80 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~ 159 (430)
+|+..-...+.++.+.. ..++.++.+.+... .++.++....+++|++........+. -+-
T Consensus 199 FDfsK~saKrA~K~~qd------~~~vrsiSfHPsGe--------fllvgTdHp~~rlYdv~T~Qcfvsan------Pd~ 258 (430)
T KOG0640|consen 199 FDFSKTSAKRAFKVFQD------TEPVRSISFHPSGE--------FLLVGTDHPTLRLYDVNTYQCFVSAN------PDD 258 (430)
T ss_pred EecccHHHHHHHHHhhc------cceeeeEeecCCCc--------eEEEecCCCceeEEeccceeEeeecC------ccc
Confidence 99976555555544322 13666777766543 77777777799999987544311110 122
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcE
Q 014154 160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (430)
Q Consensus 160 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 239 (430)
.|.+.|+++.+++.+++.++++.||.|++||--+++++.++...... ..|.+..| ..+++++++.+.|..+
T Consensus 259 qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g-------sevcSa~F--tkn~kyiLsSG~DS~v 329 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG-------SEVCSAVF--TKNGKYILSSGKDSTV 329 (430)
T ss_pred ccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC-------ceeeeEEE--ccCCeEEeecCCccee
Confidence 56789999999999999999999999999999888888877553322 67999999 8999999999999999
Q ss_pred EEEECCCCCcceEEEeecC-----CCeEEEEecCCCCEEEEEeC-CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC
Q 014154 240 RLYDTSAQRRPVMSFDFRE-----TPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (430)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~-----~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~ 313 (430)
++|.+.+++ ++..+.+.. .--+...|+....+++.-.+ .+.+.-||.+++..+..+...|.+.+..+.-||.+
T Consensus 330 kLWEi~t~R-~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~ 408 (430)
T KOG0640|consen 330 KLWEISTGR-MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVE 408 (430)
T ss_pred eeeeecCCc-eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCC
Confidence 999999976 466666531 11234557766777776543 47799999999887776664459999999999999
Q ss_pred CeEEEEeCCCcEEEEECC
Q 014154 314 PIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 314 ~~l~s~~~dg~i~iwd~~ 331 (430)
.-+++|+.|-.+|+|--+
T Consensus 409 p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 409 PAFMTCSDDFRARFWYRR 426 (430)
T ss_pred Cceeeecccceeeeeeec
Confidence 999999999999999643
No 106
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=2e-23 Score=191.98 Aligned_cols=332 Identities=14% Similarity=0.156 Sum_probs=231.5
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
-.+++++.++.+.||+...+..... +...+..-.+.- +.++.. .+.--+.++.|+..|.++||++.+++.+.+++++
T Consensus 125 e~lia~d~~~~l~vw~~s~~~~e~~-l~~~~~~~~~~~-Ital~H-P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~ 201 (910)
T KOG1539|consen 125 EHLIAVDISNILFVWKTSSIQEELY-LQSTFLKVEGDF-ITALLH-PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEF 201 (910)
T ss_pred ceEEEEEccCcEEEEEecccccccc-ccceeeeccCCc-eeeEec-chhheeeEEEeecCCcEEEEEeccCcEEEEeccc
Confidence 4578899999999999987311111 111222222221 444432 1112246889999999999999999999998874
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
. ..|+++.-.+.- ..++.|..+|++.++++.+.. .+..|... .+.|+.++|..+|
T Consensus 202 ~--------s~IT~ieqsPaL--------DVVaiG~~~G~ViifNlK~dk--------il~sFk~d-~g~VtslSFrtDG 256 (910)
T KOG1539|consen 202 F--------SRITAIEQSPAL--------DVVAIGLENGTVIIFNLKFDK--------ILMSFKQD-WGRVTSLSFRTDG 256 (910)
T ss_pred c--------cceeEeccCCcc--------eEEEEeccCceEEEEEcccCc--------EEEEEEcc-ccceeEEEeccCC
Confidence 2 366655544433 388999999999999998665 66666533 5899999999988
Q ss_pred CE-EEEEeCCCeEEEEECCCCeeeEeeCC-CCCC-------------------------------------CCCCcCCcc
Q 014154 175 KF-SLFGGKGVEVNVWDLDKCEKIWTAKP-PPKN-------------------------------------SLGIFTPTW 215 (430)
Q Consensus 175 ~~-l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~-------------------------------------~~~~~~~~~ 215 (430)
+. +++|+..|.+.+||++..+.+..... |... .....|..+
T Consensus 257 ~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~P 336 (910)
T KOG1539|consen 257 NPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAP 336 (910)
T ss_pred CeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCC
Confidence 75 55667779999999987766554442 2100 011223444
Q ss_pred eeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC---------------------------cce-----------------
Q 014154 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---------------------------RPV----------------- 251 (430)
Q Consensus 216 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------------------------~~~----------------- 251 (430)
..++.|. ..++..+.+++.|++++.+++.... .++
T Consensus 337 p~~irfy-~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~ 415 (910)
T KOG1539|consen 337 PSCIRFY-GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI 415 (910)
T ss_pred chheeee-ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence 5556664 3455666666666665555432100 000
Q ss_pred ---------------------EEEe-----ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeee---eCCCCC
Q 014154 252 ---------------------MSFD-----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF---IGKCSG 302 (430)
Q Consensus 252 ---------------------~~~~-----~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~ 302 (430)
..+. .-...+++++.++.|++.+.|+..|.|.+|++++|-....| ..| ..
T Consensus 416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah-~~ 494 (910)
T KOG1539|consen 416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH-KG 494 (910)
T ss_pred EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccc-cC
Confidence 0000 01146789999999999999999999999999999988888 466 89
Q ss_pred CeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEE---------------------------------------eec
Q 014154 303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVF---------------------------------------LKQ 343 (430)
Q Consensus 303 ~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------------------------------------~~~ 343 (430)
+|++++....++.+++++.+|.+.+||.++..++..+. +.|
T Consensus 495 ~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g 574 (910)
T KOG1539|consen 495 EVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG 574 (910)
T ss_pred ceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc
Confidence 99999998888999999999999999997665322211 235
Q ss_pred cccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154 344 HLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 344 ~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~ 377 (430)
| +..|++++|||||++ ++++.|++|++||.+..
T Consensus 575 h-~nritd~~FS~DgrWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 575 H-GNRITDMTFSPDGRWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred c-ccceeeeEeCCCCcEEEEeecCCcEEEEeccCc
Confidence 5 556799999999999 99999999999998765
No 107
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=2.4e-24 Score=194.07 Aligned_cols=336 Identities=13% Similarity=0.089 Sum_probs=234.8
Q ss_pred CCcceeeecCCCceEEEEccCCCC-C-------------cc------eee------eecCCCCCCcceeeeeecCCCCCc
Q 014154 13 PPLRALTFDSLGLIKVIEARGEHG-G-------------VP------KVV------ERWGDPHSSNCVLAASIDDSQNDP 66 (430)
Q Consensus 13 ~~~~l~t~~~dg~i~vw~~~~~~~-~-------------~~------~~~------~~~~~~~~~~~~~~~~~~~~p~g~ 66 (430)
....|+++++|..||||.+.-+.. . .+ +.. ..+.+|++-|+ ++-| +|.+.
T Consensus 205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~--sv~W--~p~~~ 280 (764)
T KOG1063|consen 205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVY--SVWW--HPEGL 280 (764)
T ss_pred CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceE--EEEE--ccchh
Confidence 457899999999999998865320 0 00 011 11236888744 4445 77887
Q ss_pred eeEEeecCCeEEEecCCCCcccceeec-cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc
Q 014154 67 LLAVARKNGLTDILNPLNGDLRVAISN-AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~ 145 (430)
.|++++.|.++.+|...+..-+..-.. ....+ +....+.+.. |+.+. ..+++-+..|..++|.-. .+.
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g--g~a~GF~g~l-w~~n~-------~~ii~~g~~Gg~hlWkt~-d~~ 349 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVG--GSAGGFWGGL-WSPNS-------NVIIAHGRTGGFHLWKTK-DKT 349 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeeccc--ccccceeeEE-EcCCC-------CEEEEecccCcEEEEecc-Ccc
Confidence 899999999999998764422221111 01100 1122344433 33333 488888999999999811 100
Q ss_pred cccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEeeCCCCCCCCCCcCCcceeEEEEeec
Q 014154 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSI 224 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 224 (430)
.-.....--.|-..|..++|+|.|.+|++.+.|.+-|+|-.-.. ..-.++.-++.+ ...++|++|.
T Consensus 350 -----~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiH------GyDl~c~~~v-- 416 (764)
T KOG1063|consen 350 -----FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIH------GYDLTCLSFV-- 416 (764)
T ss_pred -----ceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccc------cccceeeehc--
Confidence 00111111246678999999999999999999999999876421 112333333322 2457889995
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCC--------------------------------------------------------
Q 014154 225 DDHRKFVAGTNDHQVRLYDTSAQR-------------------------------------------------------- 248 (430)
Q Consensus 225 ~~~~~l~s~~~dg~i~iwd~~~~~-------------------------------------------------------- 248 (430)
+....+++|.....+|+|+....-
T Consensus 417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence 335678888888889998753100
Q ss_pred -------------------cceEEEeecCCCeEEEEecCCCCEEEEEeCC-----CcEEEEEccCCeEEeeeeCCCCCCe
Q 014154 249 -------------------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGCFIGKCSGSI 304 (430)
Q Consensus 249 -------------------~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v 304 (430)
..++.+.+|...|++++.+|+++++++++.. ..|++|+..+-..++.+.+| .-.|
T Consensus 497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~H-sLTV 575 (764)
T KOG1063|consen 497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGH-SLTV 575 (764)
T ss_pred chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheeccc-ceEE
Confidence 1123446788899999999999999999855 45999999999888899998 8999
Q ss_pred EEEEecCCCCeEEEEeCCCcEEEEECCCCceee-EEE-eeccccceEEeeeccccccc-cccCCCCceEecCCCCCc
Q 014154 305 RSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS-AVF-LKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 305 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~-~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~ 378 (430)
+.++||||+++|++.+.|.++.+|......... .+. .+.| ..+|+++.|+|++++ ++++.|.+|++|..+...
T Consensus 576 T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~H-tRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 576 TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAH-TRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLR 651 (764)
T ss_pred EEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcccccc-ceEEEEcccCcccceeEEecCCceEEEEeccCch
Confidence 999999999999999999999999885432211 111 4567 788999999999997 999999999999988763
No 108
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=9.8e-23 Score=159.94 Aligned_cols=293 Identities=14% Similarity=0.149 Sum_probs=209.9
Q ss_pred eeeeeecCCCCCceeEEeecCCeEEEecCCCCccccee-ec-cCC-----CCCCCCCCceEEEEEeecCcccccccCceE
Q 014154 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI-SN-AGD-----SGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~-~~-~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 126 (430)
+-++.| +|.|.+.|+|+...+++|.....-..++.- +. ..+ -..--+.+.|.+..|.+.. ..+
T Consensus 35 irav~f--hp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g--------eli 104 (350)
T KOG0641|consen 35 IRAVAF--HPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG--------ELI 104 (350)
T ss_pred eeeEEe--cCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc--------CeE
Confidence 455666 999999999999999999876422111100 00 000 0011244556655554433 477
Q ss_pred EEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC----CCCEEEEEe-CCCeEEEEECCCCeeeEeeC
Q 014154 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI----SEKFSLFGG-KGVEVNVWDLDKCEKIWTAK 201 (430)
Q Consensus 127 ~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~----~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~ 201 (430)
++++.|.++.+..+..... ...|.-.-++ .|.+.|..++|-. .+..|++++ .|..|++-|..+++....+.
T Consensus 105 atgsndk~ik~l~fn~dt~---~~~g~dle~n-mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 105 ATGSNDKTIKVLPFNADTC---NATGHDLEFN-MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred EecCCCceEEEEecccccc---cccCcceeee-ecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 8888888888776543222 1112222333 3568899999954 355666654 47788888999999988888
Q ss_pred CCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee--c-----CCCeEEEEecCCCCEEE
Q 014154 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--R-----ETPIKAVAEEPDSFNIY 274 (430)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~-----~~~i~~~~~sp~~~~l~ 274 (430)
+|.+ .|.++- +-++-.+++|+.|.+|++||++-..+ +.++.. | .+.|.+++..|.|++|+
T Consensus 181 ghtg---------hilaly---swn~~m~~sgsqdktirfwdlrv~~~-v~~l~~~~~~~glessavaav~vdpsgrll~ 247 (350)
T KOG0641|consen 181 GHTG---------HILALY---SWNGAMFASGSQDKTIRFWDLRVNSC-VNTLDNDFHDGGLESSAVAAVAVDPSGRLLA 247 (350)
T ss_pred CCcc---------cEEEEE---EecCcEEEccCCCceEEEEeeeccce-eeeccCcccCCCcccceeEEEEECCCcceee
Confidence 8774 344432 34788999999999999999997543 544432 2 25789999999999999
Q ss_pred EEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCC--ceeeEEEeeccccceEEee
Q 014154 275 IGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR--QLLSAVFLKQHLNEVVFDS 352 (430)
Q Consensus 275 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~ 352 (430)
+|-.|....+||++.+++++.|..| ...|.++.|+|...+|++++.|..|++=|++.. ..+..+....| ...+..+
T Consensus 248 sg~~dssc~lydirg~r~iq~f~ph-sadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh-kdk~i~~ 325 (350)
T KOG0641|consen 248 SGHADSSCMLYDIRGGRMIQRFHPH-SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH-KDKAIQC 325 (350)
T ss_pred eccCCCceEEEEeeCCceeeeeCCC-ccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec-cCceEEE
Confidence 9999999999999999999999998 999999999999999999999999999998731 11222223445 4445788
Q ss_pred eccccccc-cccCCCCceEecCCC
Q 014154 353 AFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 353 ~~s~~g~~-~~~~~d~~i~~~~~~ 375 (430)
.|+|..-. ++.+.|.++.+|..+
T Consensus 326 rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 326 RWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EecCccceeeeccCcceEEEeccC
Confidence 99998876 999999999999765
No 109
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=1.2e-23 Score=183.04 Aligned_cols=324 Identities=15% Similarity=0.092 Sum_probs=226.3
Q ss_pred CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
++.-++||+.+|.|.||+..+. +.......|++.|.++.+.- +|. |++|+.|..|..|| .+-+.++..+
T Consensus 256 engdviTgDS~G~i~Iw~~~~~-----~~~k~~~aH~ggv~~L~~lr----~Gt-llSGgKDRki~~Wd-~~y~k~r~~e 324 (626)
T KOG2106|consen 256 ENGDVITGDSGGNILIWSKGTN-----RISKQVHAHDGGVFSLCMLR----DGT-LLSGGKDRKIILWD-DNYRKLRETE 324 (626)
T ss_pred CCCCEEeecCCceEEEEeCCCc-----eEEeEeeecCCceEEEEEec----Ccc-EeecCccceEEecc-cccccccccc
Confidence 4577999999999999999775 44444448999977777665 343 77799999999999 4444444433
Q ss_pred c---cCCCC--CCCCCCceEEEEEeecCcccccccCceEEEE---------ccCCeeEEEEeeecCc----cccCCCcce
Q 014154 93 N---AGDSG--AQPEDDGIVGLHLFKRQREESSSRSRTLLTC---------TTKGKASMRSIEVTKV----SAESSCSTV 154 (430)
Q Consensus 93 ~---~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~v~~~~~~~~----~~~~~~~~i 154 (430)
. ..++. .....+-+.+ . .++.++-+ ...+.-.+|.++..+. ++.+.|+.+
T Consensus 325 lPe~~G~iRtv~e~~~di~vG-----T-------trN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v 392 (626)
T KOG2106|consen 325 LPEQFGPIRTVAEGKGDILVG-----T-------TRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHV 392 (626)
T ss_pred CchhcCCeeEEecCCCcEEEe-----e-------ccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceE
Confidence 2 00000 0011111110 0 00122222 1233336677766665 677778888
Q ss_pred EEeeecC--------CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCC
Q 014154 155 KSWNVCA--------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD 226 (430)
Q Consensus 155 ~~~~~~~--------~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 226 (430)
++|+ .| ..++.|+.|+|.+ .++.|+..|...+.|.++...+..-.. . .++++++| +|+
T Consensus 393 ~lW~-~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~---------~~ls~v~y--sp~ 458 (626)
T KOG2106|consen 393 RLWN-DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-N---------EQLSVVRY--SPD 458 (626)
T ss_pred EEcc-CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-C---------CceEEEEE--cCC
Confidence 8887 44 3678899999999 999999999999999998555443332 2 77999999 899
Q ss_pred CCEEEEEeCCCcEEEEECCCCCcceEEE-eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEe-----------
Q 014154 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG----------- 294 (430)
Q Consensus 227 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~----------- 294 (430)
|.+||.|+.|+.|+||-+.......... ..+.++|+.+.||+|+++|.+-+.|-.|..|.....+.+.
T Consensus 459 G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~ 538 (626)
T KOG2106|consen 459 GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYT 538 (626)
T ss_pred CCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeE
Confidence 9999999999999999988655433333 3355899999999999999999999999999543221111
Q ss_pred ------eeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEE-EeeccccceEEeeeccccccc-cccCCC
Q 014154 295 ------CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV-FLKQHLNEVVFDSAFADKEVA-NAAADA 366 (430)
Q Consensus 295 ------~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~-~~~~~d 366 (430)
.+-+.+...|..++-+...+++++|.+.|.|++|...=-+....+ .+.+| +..+.+++|.-+... ++.+.|
T Consensus 539 c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~gh-s~~vt~V~Fl~~d~~li~tg~D 617 (626)
T KOG2106|consen 539 CTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGH-SSHVTNVAFLCKDSHLISTGKD 617 (626)
T ss_pred EEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccc-cceeEEEEEeeCCceEEecCCC
Confidence 111222445667777778889999999999999987533322221 15677 667899999988777 787899
Q ss_pred CceEecCC
Q 014154 367 PMLEIQNG 374 (430)
Q Consensus 367 ~~i~~~~~ 374 (430)
..|..|+.
T Consensus 618 ~Si~qW~l 625 (626)
T KOG2106|consen 618 TSIMQWRL 625 (626)
T ss_pred ceEEEEEe
Confidence 99999974
No 110
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.2e-24 Score=172.48 Aligned_cols=240 Identities=15% Similarity=0.116 Sum_probs=181.5
Q ss_pred CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
-..||+|++.|++|||+..+.+ +..+++.++.+|.+++.-+++.. ...|.+||+++.||.|.||.-.+|+-....
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n--~~s~ll~~L~Gh~GPVwqv~wah--Pk~G~iLAScsYDgkVIiWke~~g~w~k~~- 96 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNN--GQSKLLAELTGHSGPVWKVAWAH--PKFGTILASCSYDGKVIIWKEENGRWTKAY- 96 (299)
T ss_pred hcceeeeecCCccEEEEEEcCC--CCceeeeEecCCCCCeeEEeecc--cccCcEeeEeecCceEEEEecCCCchhhhh-
Confidence 3479999999999999999985 44568889999999977776665 778999999999999999997766422111
Q ss_pred ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC
Q 014154 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 172 (430)
.| ..|...|++++|.|
T Consensus 97 ---------------------------------------------------------------e~-~~h~~SVNsV~wap 112 (299)
T KOG1332|consen 97 ---------------------------------------------------------------EH-AAHSASVNSVAWAP 112 (299)
T ss_pred ---------------------------------------------------------------hh-hhhcccceeecccc
Confidence 01 13556778888877
Q ss_pred --CCCEEEEEeCCCeEEEEECCCC-ee--eEeeCCCCCCCCCCcCCcceeEEEEeecCC-C-----------CEEEEEeC
Q 014154 173 --SEKFSLFGGKGVEVNVWDLDKC-EK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-H-----------RKFVAGTN 235 (430)
Q Consensus 173 --~~~~l~~~~~d~~i~~~d~~~~-~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~-----------~~l~s~~~ 235 (430)
.|-.|++++.||.|.+.+++.. .- ...... |...|+++.|.|..- | ..|++|+.
T Consensus 113 heygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a---------H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGc 183 (299)
T KOG1332|consen 113 HEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA---------HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGC 183 (299)
T ss_pred cccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc---------cccccceeeecCcCCCccccccCcccccceeeccCC
Confidence 4678899999999999988653 11 111122 335578888843211 2 56999999
Q ss_pred CCcEEEEECCCCCc-ceEEEeecCCCeEEEEecCCC----CEEEEEeCCCcEEEEEccCC--eE-EeeeeCCCCCCeEEE
Q 014154 236 DHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDS----FNIYIGNGSGDLASVDIRTG--KL-LGCFIGKCSGSIRSI 307 (430)
Q Consensus 236 dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~sp~~----~~l~~~~~d~~i~iwd~~~~--~~-~~~~~~~~~~~v~~i 307 (430)
|..|+||+...+.- .-.++.+|...|+.++|.|.- .+|++++.||++.||-.+.. +- ...+... ...+..+
T Consensus 184 Dn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f-~~~~w~v 262 (299)
T KOG1332|consen 184 DNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF-PDVVWRV 262 (299)
T ss_pred ccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC-CcceEEE
Confidence 99999999987532 234588999999999999964 68999999999999977632 11 1122233 5689999
Q ss_pred EecCCCCeEEEEeCCCcEEEEECC
Q 014154 308 ARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 308 ~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
.||+.|.+|+.++.|+.|.+|.-.
T Consensus 263 SWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 263 SWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEeccccEEEEecCCcEEEEEEeC
Confidence 999999999999999999999754
No 111
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.9e-24 Score=185.21 Aligned_cols=284 Identities=18% Similarity=0.181 Sum_probs=203.7
Q ss_pred CCceEEEEccCCCCCcceeeeecCCC-CCC-cceeeeeecCCCCCceeEEee-cCCeEEEecCCCCcccceeeccCCCCC
Q 014154 23 LGLIKVIEARGEHGGVPKVVERWGDP-HSS-NCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLNGDLRVAISNAGDSGA 99 (430)
Q Consensus 23 dg~i~vw~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~p~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 99 (430)
...+.+||+++| ..+.+|++. ... ....++. +.|++++. .-..|.+|.+........ ..+-
T Consensus 17 ~~~~~~~dl~TG-----t~~~~ykg~~~a~~~sl~~l~------~~yllsaq~~rp~l~vw~i~k~~~~~q-~~v~---- 80 (476)
T KOG0646|consen 17 PINCIVWDLRTG-----TSLLQYKGSYLAQAASLTALN------NEYLLSAQLKRPLLHVWEILKKDQVVQ-YIVL---- 80 (476)
T ss_pred CcceeEEecCCC-----ceeEEecCcccccchhhhhhc------hhheeeecccCccccccccCchhhhhh-hccc----
Confidence 345999999998 555566653 111 1111221 14566654 445799999865443331 1111
Q ss_pred CCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEE
Q 014154 100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF 179 (430)
Q Consensus 100 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~ 179 (430)
.+++.++...+.. ..+++++..|.+++|.+..+. .+.+|. .|-+.|+|+.|+.++.+|++
T Consensus 81 ---Pg~v~al~s~n~G--------~~l~ag~i~g~lYlWelssG~--------LL~v~~-aHYQ~ITcL~fs~dgs~iiT 140 (476)
T KOG0646|consen 81 ---PGPVHALASSNLG--------YFLLAGTISGNLYLWELSSGI--------LLNVLS-AHYQSITCLKFSDDGSHIIT 140 (476)
T ss_pred ---ccceeeeecCCCc--------eEEEeecccCcEEEEEecccc--------HHHHHH-hhccceeEEEEeCCCcEEEe
Confidence 1355555554443 255666699999999997654 666774 78899999999999999999
Q ss_pred EeCCCeEEEEECCC---------CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc
Q 014154 180 GGKGVEVNVWDLDK---------CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (430)
Q Consensus 180 ~~~d~~i~~~d~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 250 (430)
|+.||.|.+|.+.+ .++...+..| .-.|+.+...+.+...+|++++.|.++++||+..+. .
T Consensus 141 gskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H---------tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-L 210 (476)
T KOG0646|consen 141 GSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH---------TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-L 210 (476)
T ss_pred cCCCccEEEEEEEeecccccCCCccceeeeccC---------cceeEEEEecCCCccceEEEecCCceEEEEEeccce-e
Confidence 99999999998742 2233334443 366888887544445699999999999999999875 3
Q ss_pred eEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC----------------eEEeeeeCCCCC--CeEEEEecCC
Q 014154 251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG----------------KLLGCFIGKCSG--SIRSIARHPT 312 (430)
Q Consensus 251 ~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~----------------~~~~~~~~~~~~--~v~~i~~~~~ 312 (430)
+.++.. ...+.+++++|-++.+++|+.+|.|.+.++.+. ..+..+.+| .. .|+|++.+-|
T Consensus 211 Llti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh-~~~~~ITcLais~D 288 (476)
T KOG0646|consen 211 LLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGH-ENESAITCLAISTD 288 (476)
T ss_pred eEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccc-cCCcceeEEEEecC
Confidence 555554 368999999999999999999999999887532 234566777 55 9999999999
Q ss_pred CCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccc
Q 014154 313 LPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK 357 (430)
Q Consensus 313 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 357 (430)
|.+|++|+.||.|+|||+.+.+++.++. +..+.|+.+.+.|-
T Consensus 289 gtlLlSGd~dg~VcvWdi~S~Q~iRtl~---~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 289 GTLLLSGDEDGKVCVWDIYSKQCIRTLQ---TSKGPVTNLQINPL 330 (476)
T ss_pred ccEEEeeCCCCCEEEEecchHHHHHHHh---hhccccceeEeecc
Confidence 9999999999999999999999988753 12333555555443
No 112
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4.1e-24 Score=183.95 Aligned_cols=269 Identities=16% Similarity=0.206 Sum_probs=202.6
Q ss_pred cceeeecCCCceEEEEccCCCCC--ccee---e----eec----CCCCCCcceeeeeecCCCCCceeEEeecCCeEEEec
Q 014154 15 LRALTFDSLGLIKVIEARGEHGG--VPKV---V----ERW----GDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILN 81 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~--~~~~---~----~~~----~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd 81 (430)
.+.++++.+|+|.=|++.++... +.+. + ..+ ..|... +++++. +|||+|||+|+.|..|.||+
T Consensus 155 ~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~ke--il~~av--S~Dgkylatgg~d~~v~Iw~ 230 (479)
T KOG0299|consen 155 KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKE--ILTLAV--SSDGKYLATGGRDRHVQIWD 230 (479)
T ss_pred cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccce--eEEEEE--cCCCcEEEecCCCceEEEec
Confidence 58999999999999999886311 1100 0 011 134444 555655 78999999999999999999
Q ss_pred CCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC
Q 014154 82 PLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA 161 (430)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~ 161 (430)
..+.+.+..+.+| .+.+.++.+..... .+++++.|..+.+|+++... .+..+ ..|
T Consensus 231 ~~t~ehv~~~~gh--------r~~V~~L~fr~gt~--------~lys~s~Drsvkvw~~~~~s--------~vetl-yGH 285 (479)
T KOG0299|consen 231 CDTLEHVKVFKGH--------RGAVSSLAFRKGTS--------ELYSASADRSVKVWSIDQLS--------YVETL-YGH 285 (479)
T ss_pred Ccccchhhccccc--------ccceeeeeeecCcc--------ceeeeecCCceEEEehhHhH--------HHHHH-hCC
Confidence 9999988887664 56888888877665 89999999999999986432 33333 267
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE
Q 014154 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 241 (430)
...|..+....-++.+-+|+.|.++++|++.....+ .+.++. ..+.|++|. +...+++|+.+|.|.+
T Consensus 286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-ifrg~~---------~sidcv~~I---n~~HfvsGSdnG~IaL 352 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IFRGGE---------GSIDCVAFI---NDEHFVSGSDNGSIAL 352 (479)
T ss_pred ccceeeechhcccceEEeccccceeEEEecccccee-eeeCCC---------CCeeeEEEe---cccceeeccCCceEEE
Confidence 788999988878888888889999999999543222 233332 678999996 6678999999999999
Q ss_pred EECCCCCcceEEEee-c-----------CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC----eEEeeeeCCCCCCeE
Q 014154 242 YDTSAQRRPVMSFDF-R-----------ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG----KLLGCFIGKCSGSIR 305 (430)
Q Consensus 242 wd~~~~~~~~~~~~~-~-----------~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~v~ 305 (430)
|++... +|+.+... | ...|++++..|...++++|+.+|.|++|-+..+ +++..+.. .+-|+
T Consensus 353 Ws~~KK-kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~--~GfVN 429 (479)
T KOG0299|consen 353 WSLLKK-KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL--VGFVN 429 (479)
T ss_pred eeeccc-CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc--ccEEE
Confidence 999974 45554432 2 127899999999999999999999999998876 45666663 67899
Q ss_pred EEEecCCCCeEEEE-eCCCcEEEE
Q 014154 306 SIARHPTLPIIASC-GLDSYLRFW 328 (430)
Q Consensus 306 ~i~~~~~~~~l~s~-~~dg~i~iw 328 (430)
+++|+++|++|++| +....+--|
T Consensus 430 sl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 430 SLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred EEEEccCCCEEEEeccccccccee
Confidence 99999999966555 444444444
No 113
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.4e-26 Score=207.76 Aligned_cols=258 Identities=20% Similarity=0.278 Sum_probs=209.1
Q ss_pred ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc
Q 014154 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~ 145 (430)
.+++.+..+-.+++|+...... |...+.++++-. .. ..++.|+.++.+.+|.+.....
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~~~~--------------hsaav~~lk~~~-s~-------r~~~~Gg~~~k~~L~~i~kp~~ 62 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTREFVA--------------HSAAVGCLKIRK-SS-------RSLVTGGEDEKVNLWAIGKPNA 62 (825)
T ss_pred cccceeeeeeccccccchhhhh--------------hhhhhceeeeec-cc-------eeeccCCCceeeccccccCCch
Confidence 3455555666678888643221 112333444421 11 4678888888898998765432
Q ss_pred cccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
+.-+. .|...|.++.|++...+|+.|+.+|+|++||++..+.++++.+|. ..+.++.| +|
T Consensus 63 --------i~S~~-~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~---------~~~~sv~f--~P 122 (825)
T KOG0267|consen 63 --------ITSLT-GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHL---------LNITSVDF--HP 122 (825)
T ss_pred --------hheee-ccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccc---------cCcceeee--cc
Confidence 22233 678999999999999999999999999999999999888888876 66888899 89
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeE
Q 014154 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR 305 (430)
Q Consensus 226 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 305 (430)
-+.++++|+.|..+++||.+... +...+.+|...+.++.|+|+|++++.|++|..++|||+..|+.+..|..| .+.+.
T Consensus 123 ~~~~~a~gStdtd~~iwD~Rk~G-c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~-e~~v~ 200 (825)
T KOG0267|consen 123 YGEFFASGSTDTDLKIWDIRKKG-CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH-EGKVQ 200 (825)
T ss_pred ceEEeccccccccceehhhhccC-ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccc-ccccc
Confidence 99999999999999999999644 58889999999999999999999999999999999999999999999998 99999
Q ss_pred EEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceE
Q 014154 306 SIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLE 370 (430)
Q Consensus 306 ~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~ 370 (430)
.+.|+|..-++++||.|++|++||+++.+.+.. .+.. ...|.+++|+|+++.+..+..-.+.
T Consensus 201 sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s--~~~~-~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 201 SLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS--GKPE-TDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred ccccCchhhhhccCCCCceeeeeccceeEEeec--cCCc-cCCceeeeecCCceeeecCchhhhh
Confidence 999999999999999999999999999888876 4444 4446899999999985555544444
No 114
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.1e-24 Score=183.99 Aligned_cols=293 Identities=15% Similarity=0.112 Sum_probs=218.9
Q ss_pred CCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEE
Q 014154 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL 127 (430)
Q Consensus 48 ~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 127 (430)
|...-.+.++.| +|..++|++++.||+++||.+. |+.-..++... ...-+|....+.+... ..++
T Consensus 210 ~ps~~~I~sv~F--Hp~~plllvaG~d~~lrifqvD-Gk~N~~lqS~~-----l~~fPi~~a~f~p~G~-------~~i~ 274 (514)
T KOG2055|consen 210 HPSHGGITSVQF--HPTAPLLLVAGLDGTLRIFQVD-GKVNPKLQSIH-----LEKFPIQKAEFAPNGH-------SVIF 274 (514)
T ss_pred CcCcCCceEEEe--cCCCceEEEecCCCcEEEEEec-CccChhheeee-----eccCccceeeecCCCc-------eEEE
Confidence 444445777778 9999999999999999999984 44332222210 0113566666666443 4788
Q ss_pred EEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCC
Q 014154 128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS 207 (430)
Q Consensus 128 ~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 207 (430)
+++.......|++..... ..+....-.....+....++|++++|+..+..|.|.+....+++.+..++..
T Consensus 275 ~s~rrky~ysyDle~ak~------~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie---- 344 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKV------TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE---- 344 (514)
T ss_pred ecccceEEEEeecccccc------ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec----
Confidence 888888889998864331 0111111111345777888999999999999999999999999888877764
Q ss_pred CCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecC-CCeEEEEecCCCCEEEEEeCCCcEEEEE
Q 014154 208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVD 286 (430)
Q Consensus 208 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~d~~i~iwd 286 (430)
+.|..++| +.++..|++++.+|.|.+||++... .++.+.... -.-++++.++++.+||+|+..|.|.|||
T Consensus 345 ------G~v~~~~f--sSdsk~l~~~~~~GeV~v~nl~~~~-~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 345 ------GVVSDFTF--SSDSKELLASGGTGEVYVWNLRQNS-CLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred ------cEEeeEEE--ecCCcEEEEEcCCceEEEEecCCcc-eEEEEeecCccceeeeeecCCCceEEeccCcceEEEec
Confidence 67899999 7889999999999999999999864 466665432 2346778889999999999999999999
Q ss_pred ccC------CeEEeeeeCCCCCCeEEEEecCCCCeEEEEe--CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccc
Q 014154 287 IRT------GKLLGCFIGKCSGSIRSIARHPTLPIIASCG--LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE 358 (430)
Q Consensus 287 ~~~------~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 358 (430)
..+ .+++..+..- ...|++++|+|+.++|+.+| .+..+|+-.+.+......++..+..-+.+++++|||.+
T Consensus 416 ~~s~~~s~~PkPik~~dNL-tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~s 494 (514)
T KOG2055|consen 416 GNSCFASTNPKPIKTVDNL-TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNS 494 (514)
T ss_pred cchhhccCCCCchhhhhhh-heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCC
Confidence 653 4566666655 67899999999999998886 56789999998877766654333333447999999988
Q ss_pred cc-cccCCCCceEecCCC
Q 014154 359 VA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 359 ~~-~~~~~d~~i~~~~~~ 375 (430)
-+ +.|..+|.+.+|...
T Consensus 495 G~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 495 GYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ceEEeecCCCceeeEeec
Confidence 87 999999999999753
No 115
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=2.5e-23 Score=169.45 Aligned_cols=294 Identities=10% Similarity=0.056 Sum_probs=217.3
Q ss_pred CCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccce----eec---cCCCCCCCCCCceEEEEEeecCccc
Q 014154 46 GDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA----ISN---AGDSGAQPEDDGIVGLHLFKRQREE 118 (430)
Q Consensus 46 ~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~----~~~---~~~~~~~~~~~~i~~~~~~~~~~~~ 118 (430)
..|.+.|..+.+.. ..|+|+++|+.||.|.+||+++...... .+. +....-..|.-.|..+.|++.+.
T Consensus 40 r~HgGsvNsL~id~---tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt-- 114 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDL---TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT-- 114 (397)
T ss_pred ccCCCccceeeecc---ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC--
Confidence 34778877666654 4789999999999999999976541110 111 11112224566788899999988
Q ss_pred ccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC---CCCEEEEEeCCCeEEEEECCCCe
Q 014154 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCE 195 (430)
Q Consensus 119 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~ 195 (430)
+.+.+++.|++++||+..... ....|. ..+.|.+-+++| ...++|+|..+-.|++.|+.+|.
T Consensus 115 -----GmFtssSFDhtlKVWDtnTlQ--------~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs 179 (397)
T KOG4283|consen 115 -----GMFTSSSFDHTLKVWDTNTLQ--------EAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS 179 (397)
T ss_pred -----ceeecccccceEEEeecccce--------eeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc
Confidence 899999999999999976443 333444 357888888888 45688889999999999999999
Q ss_pred eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEEEEECCCCCcceEEE--------------eecCCC
Q 014154 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVMSF--------------DFRETP 260 (430)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~--------------~~~~~~ 260 (430)
..+.+.+|. ..|.++.| +|... .|++|+.||.|++||++...-....+ ..|.+.
T Consensus 180 ~sH~LsGHr---------~~vlaV~W--sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gk 248 (397)
T KOG4283|consen 180 FSHTLSGHR---------DGVLAVEW--SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGK 248 (397)
T ss_pred ceeeecccc---------CceEEEEe--ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccce
Confidence 999999987 67999999 55544 78899999999999998642223332 346678
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC--CCC---CeEEEEecCCCCeEEEEeCCCcEEEEECCCCce
Q 014154 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK--CSG---SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 261 i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~---~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 335 (430)
+..++|+.++.++++.+.|..+++|+..+|+-...-.+. +.. .-..+. +-+...++---.++.+.++++-++..
T Consensus 249 vngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ 327 (397)
T KOG4283|consen 249 VNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSF 327 (397)
T ss_pred eeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceE
Confidence 999999999999999999999999999887642211110 011 111122 23333444445668899999999999
Q ss_pred eeEEEeeccccceEEeeeccccccc-cccCCCCceEecCC
Q 014154 336 LSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 336 ~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~ 374 (430)
+.. +.+| ...+.+.+|.|+=+. .++..|+.+..|-.
T Consensus 328 ir~--l~~h-~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 328 VRR--LSTH-LKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEe--eecc-cceeeEEeecCchhhhhccccCCccccccc
Confidence 987 6778 555789999998776 88999999999976
No 116
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.6e-24 Score=171.77 Aligned_cols=237 Identities=13% Similarity=0.145 Sum_probs=184.8
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCee--eEe
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEK--IWT 199 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~--~~~ 199 (430)
.++++|+.|++++|+.+..+.. ...+-.. ..|.++|..++|.. -|.+|++++.||.|.||.-+.++- ..+
T Consensus 24 krlATcsSD~tVkIf~v~~n~~-----s~ll~~L-~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e 97 (299)
T KOG1332|consen 24 KRLATCSSDGTVKIFEVRNNGQ-----SKLLAEL-TGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYE 97 (299)
T ss_pred ceeeeecCCccEEEEEEcCCCC-----ceeeeEe-cCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhh
Confidence 5899999999999999874431 0122222 36889999999965 799999999999999999887732 222
Q ss_pred eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC--CcceEEEeecCCCeEEEEecCC---C----
Q 014154 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ--RRPVMSFDFRETPIKAVAEEPD---S---- 270 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~sp~---~---- 270 (430)
...| ...|++++|.|+.-|-.|++++.||.|.|.+.+.. .........|...|++++|.|- |
T Consensus 98 ~~~h---------~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~ 168 (299)
T KOG1332|consen 98 HAAH---------SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVD 168 (299)
T ss_pred hhhh---------cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccc
Confidence 2233 37899999987777889999999999999998864 2223456679999999999885 3
Q ss_pred -------CEEEEEeCCCcEEEEEccCCe--EEeeeeCCCCCCeEEEEecCCC----CeEEEEeCCCcEEEEECCCCceee
Q 014154 271 -------FNIYIGNGSGDLASVDIRTGK--LLGCFIGKCSGSIRSIARHPTL----PIIASCGLDSYLRFWDIKTRQLLS 337 (430)
Q Consensus 271 -------~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~~----~~l~s~~~dg~i~iwd~~~~~~~~ 337 (430)
+.|++|+.|+.|+||+..+++ ...+|.+| ...|+.++|.|.- .+|++++.||+|.||.........
T Consensus 169 ~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H-~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 169 QGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGH-KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred cCcccccceeeccCCccceeeeecCCcchhhhhhhhhc-chhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 569999999999999998764 34558888 9999999999964 479999999999999876321111
Q ss_pred EEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 338 AVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 338 ~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
...+-......++.++||..|.+ +.++.|+.+.+|..+.
T Consensus 248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 11122234677899999999999 8888999999997765
No 117
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.3e-24 Score=185.84 Aligned_cols=270 Identities=13% Similarity=0.097 Sum_probs=206.2
Q ss_pred EeecC-CeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEE-ccCCeeEEEEeeecCccc
Q 014154 70 VARKN-GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSA 147 (430)
Q Consensus 70 ~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~ 147 (430)
+++.| ..+.+||+++|.....+++-... .-.++...+. .+++++ .....+.+|.+.....
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a-------~~~sl~~l~~---------~yllsaq~~rp~l~vw~i~k~~~-- 73 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLA-------QAASLTALNN---------EYLLSAQLKRPLLHVWEILKKDQ-- 73 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccc-------cchhhhhhch---------hheeeecccCccccccccCchhh--
Confidence 34444 45999999999988888762110 0011111111 133333 3334677777643321
Q ss_pred cCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC
Q 014154 148 ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH 227 (430)
Q Consensus 148 ~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 227 (430)
.+ .+ ..-.+.+.+++-+|.|.+|+.|+..|.|++|.+.+|..+..+..|. ..|+++.| +.|+
T Consensus 74 -----~~-q~-~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHY---------Q~ITcL~f--s~dg 135 (476)
T KOG0646|consen 74 -----VV-QY-IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHY---------QSITCLKF--SDDG 135 (476)
T ss_pred -----hh-hh-cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhc---------cceeEEEE--eCCC
Confidence 11 11 1234789999999999999999899999999999999988887765 77999999 8999
Q ss_pred CEEEEEeCCCcEEEEECCC--------CCcceEEEeecCCCeEEEEecCC--CCEEEEEeCCCcEEEEEccCCeEEeeee
Q 014154 228 RKFVAGTNDHQVRLYDTSA--------QRRPVMSFDFRETPIKAVAEEPD--SFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (430)
Q Consensus 228 ~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~~~i~~~~~sp~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 297 (430)
.+|++|+.||.|.+|++.. .-.|+..+..|.-+|+.+...+. ..+|++++.|.++++||+..+.++.++.
T Consensus 136 s~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~ 215 (476)
T KOG0646|consen 136 SHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT 215 (476)
T ss_pred cEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe
Confidence 9999999999999998642 23478899999999999988765 4799999999999999999999988887
Q ss_pred CCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCc--e------------eeEEEeecccc-ceEEeeeccccccc-c
Q 014154 298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ--L------------LSAVFLKQHLN-EVVFDSAFADKEVA-N 361 (430)
Q Consensus 298 ~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~--~------------~~~~~~~~~~~-~~v~~~~~s~~g~~-~ 361 (430)
- ...+.+++.+|-+..++.|+.+|.|.+.++.... . .....+.||.+ ..|++++.+-||.+ +
T Consensus 216 f--p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 216 F--PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred c--CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 6 5789999999999999999999999998875432 0 01111456644 46899999999999 9
Q ss_pred ccCCCCceEecCCCCC
Q 014154 362 AAADAPMLEIQNGNDT 377 (430)
Q Consensus 362 ~~~~d~~i~~~~~~~~ 377 (430)
+|+.||.+.|||....
T Consensus 294 SGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSK 309 (476)
T ss_pred eeCCCCCEEEEecchH
Confidence 9999999999997654
No 118
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.4e-25 Score=201.17 Aligned_cols=231 Identities=14% Similarity=0.192 Sum_probs=185.8
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEeeCC
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 202 (430)
+.+++++..|.+.+|++.... ....+.+|+ .|...+.++.|++ ..++|++|+.||+|++||++......++..
T Consensus 101 NlIAT~s~nG~i~vWdlnk~~-----rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~ 174 (839)
T KOG0269|consen 101 NLIATCSTNGVISVWDLNKSI-----RNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS 174 (839)
T ss_pred hhheeecCCCcEEEEecCccc-----cchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc
Confidence 789999999999999997631 233556666 7889999999998 567889999999999999987766655555
Q ss_pred CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcE
Q 014154 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL 282 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i 282 (430)
.. ..|..++|++. .+..++++...|.+++||++...++...+..|.++|.|+.|+|++.+||+|+.|+.|
T Consensus 175 nS---------ESiRDV~fsp~-~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~v 244 (839)
T KOG0269|consen 175 NS---------ESIRDVKFSPG-YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMV 244 (839)
T ss_pred cc---------hhhhceeeccC-CCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccE
Confidence 33 67999999643 477999999999999999999888889999999999999999999999999999999
Q ss_pred EEEEccCCeE--EeeeeCCCCCCeEEEEecCCCC-eEEEEe--CCCcEEEEECCCCceeeEEEeeccccceEEeeecccc
Q 014154 283 ASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLP-IIASCG--LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK 357 (430)
Q Consensus 283 ~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~-~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 357 (430)
+|||..+.+. +.++.. ..+|.++.|-|..+ .|++++ .|-.|+|||++..-..... +..| ...++.++|...
T Consensus 245 kiWd~t~~~~~~~~tInT--iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t-~~eH-~~~vt~i~W~~~ 320 (839)
T KOG0269|consen 245 KIWDMTDSRAKPKHTINT--IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYAT-FLEH-TDSVTGIAWDSG 320 (839)
T ss_pred EEEeccCCCccceeEEee--cceeeeeeeccCccchhhhhhccccceEEEEeecccccccee-eecc-CccccceeccCC
Confidence 9999976654 444444 67999999999775 466665 5778999999854433332 5556 556799999873
Q ss_pred ccc--cccCCCCceEecCC
Q 014154 358 EVA--NAAADAPMLEIQNG 374 (430)
Q Consensus 358 g~~--~~~~~d~~i~~~~~ 374 (430)
... .+++.|+.+..-..
T Consensus 321 d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 321 DRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred CceeeEeecCccHHHHhhh
Confidence 333 88889998865433
No 119
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2e-24 Score=194.13 Aligned_cols=227 Identities=14% Similarity=0.166 Sum_probs=192.3
Q ss_pred eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCC
Q 014154 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (430)
Q Consensus 125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 204 (430)
.+++.+.+..+.+|+-.... ...+.+.. ...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+..+
T Consensus 189 n~laValg~~vylW~~~s~~--------v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~- 258 (484)
T KOG0305|consen 189 NVLAVALGQSVYLWSASSGS--------VTELCSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS- 258 (484)
T ss_pred CeEEEEecceEEEEecCCCc--------eEEeEecC-CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC-
Confidence 45666777789999865332 34445543 789999999999999999999999999999988888877762
Q ss_pred CCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEE
Q 014154 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS 284 (430)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i 284 (430)
|...|.+++| ++..+.+|+.++.|..+|++..+.....+.+|...|..++|++|++++++|+.|+.+.|
T Consensus 259 -------h~~rvg~laW----~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~I 327 (484)
T KOG0305|consen 259 -------HASRVGSLAW----NSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFI 327 (484)
T ss_pred -------cCceeEEEec----cCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEe
Confidence 2378999999 47899999999999999999877655568899999999999999999999999999999
Q ss_pred EEccCCeEEeeeeCCCCCCeEEEEecCC-CCeEEEEe--CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-
Q 014154 285 VDIRTGKLLGCFIGKCSGSIRSIARHPT-LPIIASCG--LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA- 360 (430)
Q Consensus 285 wd~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~- 360 (430)
||.....++..+..| .+.|.+++|+|- ..+||+|+ .|+.|++||+.++..+..+. ....|.++.|++..+-
T Consensus 328 wd~~~~~p~~~~~~H-~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd----tgsQVcsL~Wsk~~kEi 402 (484)
T KOG0305|consen 328 WDGLSPEPKFTFTEH-TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD----TGSQVCSLIWSKKYKEL 402 (484)
T ss_pred ccCCCccccEEEecc-ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc----cCCceeeEEEcCCCCEE
Confidence 999888899999998 999999999994 46888875 79999999999999998853 3455899999998843
Q ss_pred --cccCCCCceEecCCCCC
Q 014154 361 --NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 361 --~~~~~d~~i~~~~~~~~ 377 (430)
..|-.++.|.||.++..
T Consensus 403 ~sthG~s~n~i~lw~~ps~ 421 (484)
T KOG0305|consen 403 LSTHGYSENQITLWKYPSM 421 (484)
T ss_pred EEecCCCCCcEEEEecccc
Confidence 44667889999999764
No 120
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.2e-23 Score=193.67 Aligned_cols=263 Identities=11% Similarity=0.096 Sum_probs=206.1
Q ss_pred CCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCC-cccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceE
Q 014154 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG-DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (430)
Q Consensus 48 ~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 126 (430)
|... ...+++ .|+|.+|++++.||.|++|+.... +....+.. +...+.++.... +.|
T Consensus 12 ht~G--~t~i~~--d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~--------~g~~v~~ia~~s----------~~f 69 (933)
T KOG1274|consen 12 HTGG--LTLICY--DPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI--------SGELVSSIACYS----------NHF 69 (933)
T ss_pred ccCc--eEEEEE--cCCCCEEEEecCCCceEEeecCCcccCCchhhc--------cCceeEEEeecc----------cce
Confidence 5544 556777 788999999999999999987554 22222211 223444444332 589
Q ss_pred EEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCC
Q 014154 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (430)
Q Consensus 127 ~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 206 (430)
++++.++++.++.+.... .++.+..+. -++.+++++.+|++++.|+.|-.|++.++.+......+.+|.
T Consensus 70 ~~~s~~~tv~~y~fps~~-----~~~iL~Rft----lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~-- 138 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGE-----EDTILARFT----LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD-- 138 (933)
T ss_pred EEeeccceEEEeeCCCCC-----ccceeeeee----ccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC--
Confidence 999999999999875432 344555454 578999999999999999999999999999988888888876
Q ss_pred CCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee-------c-CCCeEEEEecCCCCEEEEEeC
Q 014154 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-------R-ETPIKAVAEEPDSFNIYIGNG 278 (430)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~-~~~i~~~~~sp~~~~l~~~~~ 278 (430)
.+|.++.| +|++++||+.+.||.|++||+.++.. ..++.+ - ...+..++|+|++..+++.+.
T Consensus 139 -------apVl~l~~--~p~~~fLAvss~dG~v~iw~~~~~~~-~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~ 208 (933)
T KOG1274|consen 139 -------APVLQLSY--DPKGNFLAVSSCDGKVQIWDLQDGIL-SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV 208 (933)
T ss_pred -------CceeeeeE--cCCCCEEEEEecCceEEEEEcccchh-hhhcccCCccccccccceeeeeeecCCCCeEEeecc
Confidence 78999999 89999999999999999999998542 333322 1 345678999999888888889
Q ss_pred CCcEEEEEccCCeEEeeeeCCC-CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccc
Q 014154 279 SGDLASVDIRTGKLLGCFIGKC-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK 357 (430)
Q Consensus 279 d~~i~iwd~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 357 (430)
|+.|.+|+.........+...+ ...+..++|+|+|.|||+++.||.|.|||+++-.. + .....|.+++|.|+
T Consensus 209 d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~------~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 209 DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H------EFKRAVCCEAWKPN 281 (933)
T ss_pred CCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c------cccceeEEEecCCC
Confidence 9999999999999988887532 34489999999999999999999999999997222 1 12455789999998
Q ss_pred ccc
Q 014154 358 EVA 360 (430)
Q Consensus 358 g~~ 360 (430)
...
T Consensus 282 ~n~ 284 (933)
T KOG1274|consen 282 ANA 284 (933)
T ss_pred CCe
Confidence 775
No 121
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5e-24 Score=196.68 Aligned_cols=213 Identities=15% Similarity=0.141 Sum_probs=167.1
Q ss_pred eecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccccc
Q 014154 43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (430)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 122 (430)
..|.+|.+. ++.++| +. .++|++++.|.+|++|++....++..|. |.+.++++.|.+.+.
T Consensus 363 ~ef~GHt~D--ILDlSW--SK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~---------HndfVTcVaFnPvDD------ 422 (712)
T KOG0283|consen 363 CEFKGHTAD--ILDLSW--SK-NNFLLSSSMDKTVRLWHPGRKECLKVFS---------HNDFVTCVAFNPVDD------ 422 (712)
T ss_pred hhhhccchh--heeccc--cc-CCeeEeccccccEEeecCCCcceeeEEe---------cCCeeEEEEecccCC------
Confidence 345567777 777888 42 3689999999999999999999998886 457899999999887
Q ss_pred CceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCC
Q 014154 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (430)
Q Consensus 123 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 202 (430)
.++++|+.||.++||+|. +..|-.|.- -..-|++++|.|+|++.++|+.+|.+++|+....+.......
T Consensus 423 -ryFiSGSLD~KvRiWsI~---------d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 423 -RYFISGSLDGKVRLWSIS---------DKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred -CcEeecccccceEEeecC---------cCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 899999999999999985 346777773 348899999999999999999999999999987766544333
Q ss_pred CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecC--CCeEEEEecCCCCEEEEEeCCC
Q 014154 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE--TPIKAVAEEPDSFNIYIGNGSG 280 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~d~ 280 (430)
+........+ ..|+.+.|.+ .+...+++.+.|..|+|||.++ ..++..++++. ..-....|+.||++|+++++|.
T Consensus 492 ~~~~~Kk~~~-~rITG~Q~~p-~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 492 RLHNKKKKQG-KRITGLQFFP-GDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS 568 (712)
T ss_pred eeccCccccC-ceeeeeEecC-CCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence 2211112222 3799999963 2334566779999999999987 44677888653 2335667899999999999999
Q ss_pred cEEEEEccC
Q 014154 281 DLASVDIRT 289 (430)
Q Consensus 281 ~i~iwd~~~ 289 (430)
.|++|++..
T Consensus 569 ~VYiW~~~~ 577 (712)
T KOG0283|consen 569 WVYIWKNDS 577 (712)
T ss_pred eEEEEeCCC
Confidence 999999743
No 122
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=7.4e-24 Score=187.95 Aligned_cols=299 Identities=14% Similarity=0.117 Sum_probs=219.0
Q ss_pred eeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccc
Q 014154 41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (430)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 120 (430)
+...+.+|.+.|.+++. .|.|.+||+|+.||+|+||.+.+|+++..+.. ...|.++.|.+...
T Consensus 392 ~~lvyrGHtg~Vr~iSv----dp~G~wlasGsdDGtvriWEi~TgRcvr~~~~---------d~~I~~vaw~P~~~---- 454 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISV----DPSGEWLASGSDDGTVRIWEIATGRCVRTVQF---------DSEIRSVAWNPLSD---- 454 (733)
T ss_pred eeeeEeccCCeEEEEEe----cCCcceeeecCCCCcEEEEEeecceEEEEEee---------cceeEEEEecCCCC----
Confidence 33567889998665554 56789999999999999999999999998765 24667777666554
Q ss_pred ccCceEEEEccCCeeEEEEeeecCc----------cc----cCCCcceEEeee--------------cCCCceEEEEEcC
Q 014154 121 SRSRTLLTCTTKGKASMRSIEVTKV----------SA----ESSCSTVKSWNV--------------CASGTIAFSKVDI 172 (430)
Q Consensus 121 ~~~~~~~~~~~~g~~~v~~~~~~~~----------~~----~~~~~~i~~~~~--------------~~~~~i~~~~~~~ 172 (430)
..+++...+..+.|.+-.++.. ++ ...+..+-.|.- .+...|..+.|+.
T Consensus 455 ---~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr 531 (733)
T KOG0650|consen 455 ---LCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR 531 (733)
T ss_pred ---ceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec
Confidence 3455555555555555444422 11 112334445543 3457789999999
Q ss_pred CCCEEEEEeCC---CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc
Q 014154 173 SEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR 249 (430)
Q Consensus 173 ~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 249 (430)
.|.||++...+ ..|.|+++........+.... +.|.++.| +|...+|++++. ..|+|||+..+ .
T Consensus 532 kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ksk---------G~vq~v~F--HPs~p~lfVaTq-~~vRiYdL~kq-e 598 (733)
T KOG0650|consen 532 KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSK---------GLVQRVKF--HPSKPYLFVATQ-RSVRIYDLSKQ-E 598 (733)
T ss_pred CCceEEEeccCCCcceEEEEecccccccCchhhcC---------CceeEEEe--cCCCceEEEEec-cceEEEehhHH-H
Confidence 99999987653 468899987654433332222 56899999 677778887664 58999999874 3
Q ss_pred ceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC-eEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEE
Q 014154 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFW 328 (430)
Q Consensus 250 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iw 328 (430)
.+..+......|.+++.+|.|..|+.|+.|+.+..||+.-. ++.+++..| ...+++++||+.-.++++|+.||++.||
T Consensus 599 lvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H-~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 599 LVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH-EKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred HHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh-hhhhhhhhhccccceeeeecCCCcEEEE
Confidence 45555555678999999999999999999999999999855 456677776 8999999999999999999999999999
Q ss_pred ECC-------CCceeeEEEeeccccc---eEEeeeccccccc-cccCCCCceEecC
Q 014154 329 DIK-------TRQLLSAVFLKQHLNE---VVFDSAFADKEVA-NAAADAPMLEIQN 373 (430)
Q Consensus 329 d~~-------~~~~~~~~~~~~~~~~---~v~~~~~s~~g~~-~~~~~d~~i~~~~ 373 (430)
.-. +.-.+-.-.+.+|... .|.++.|+|...+ ++++.||+|++|.
T Consensus 678 hg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 678 HGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred eeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 642 1112221126677322 3788999999999 9999999999983
No 123
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.8e-23 Score=168.45 Aligned_cols=269 Identities=10% Similarity=0.088 Sum_probs=200.6
Q ss_pred eEEeecCCeEEEecCCCCc------ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154 68 LAVARKNGLTDILNPLNGD------LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 68 l~~g~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~ 141 (430)
|++|+....|.-+++.-.. ...++.. .-.|..|...|.++.+-. ..+++++.|-++.||++.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~--lF~~~aH~~sitavAVs~----------~~~aSGssDetI~IYDm~ 71 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKP--LFAFSAHAGSITALAVSG----------PYVASGSSDETIHIYDMR 71 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeec--cccccccccceeEEEecc----------eeEeccCCCCcEEEEecc
Confidence 5677777777666653211 1111111 112456677887776643 478888888888888876
Q ss_pred ecCccccCCCcceEEeeecCCCceEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEE
Q 014154 142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK--FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA 219 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 219 (430)
.... +-.. +.|.+.|+++.|.+.-. .|++|+.||.|.+|+...-..+..++.|. ..|+.+
T Consensus 72 k~~q--------lg~l-l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~---------~~Vt~l 133 (362)
T KOG0294|consen 72 KRKQ--------LGIL-LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHK---------GQVTDL 133 (362)
T ss_pred chhh--------hcce-eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccc---------ccccee
Confidence 4432 1111 24678999999998654 89999999999999999999999999886 669999
Q ss_pred EEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC
Q 014154 220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299 (430)
Q Consensus 220 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 299 (430)
+. +|.+.+.++.+.|+.+++||+-.++. -..++.. ...+.+.|+|.|.+++.+..+ .|-+|.+.+..+...+..
T Consensus 134 si--HPS~KLALsVg~D~~lr~WNLV~Gr~-a~v~~L~-~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~- 207 (362)
T KOG0294|consen 134 SI--HPSGKLALSVGGDQVLRTWNLVRGRV-AFVLNLK-NKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN- 207 (362)
T ss_pred Ee--cCCCceEEEEcCCceeeeehhhcCcc-ceeeccC-CcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-
Confidence 99 89999999999999999999998774 2233322 234559999999988888765 489999988877666654
Q ss_pred CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeec--cccccc-cccCCCCceEecCCCC
Q 014154 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAF--ADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 300 ~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
...+.++.|. ++..|++|+.|+.|++||..+..+... +.+| ...|-++.+ .|++.+ ++++.||.|++|+.+.
T Consensus 208 -~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~--~~AH-~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 208 -PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTE--FLAH-ENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred -cccceeeeec-CCceEEEecCCceEEEeccCCCcccee--eecc-hhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 3567777775 556899999999999999998777776 6678 455677763 456677 9999999999999876
Q ss_pred C
Q 014154 377 T 377 (430)
Q Consensus 377 ~ 377 (430)
.
T Consensus 283 ~ 283 (362)
T KOG0294|consen 283 E 283 (362)
T ss_pred c
Confidence 4
No 124
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=2.7e-24 Score=182.56 Aligned_cols=224 Identities=12% Similarity=0.127 Sum_probs=180.8
Q ss_pred CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
|...+++++.|+.+++|++... ++..++.+|.+.++.+.|....+ .+++|+.|.+|++||+....+..++-
T Consensus 230 ~~~~~iAas~d~~~r~Wnvd~~-----r~~~TLsGHtdkVt~ak~~~~~~----~vVsgs~DRtiK~WDl~k~~C~kt~l 300 (459)
T KOG0288|consen 230 DNKHVIAASNDKNLRLWNVDSL-----RLRHTLSGHTDKVTAAKFKLSHS----RVVSGSADRTIKLWDLQKAYCSKTVL 300 (459)
T ss_pred CCceEEeecCCCceeeeeccch-----hhhhhhcccccceeeehhhcccc----ceeeccccchhhhhhhhhhheecccc
Confidence 4477899999999999999998 88899999999988777765333 38999999999999997755444321
Q ss_pred ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC
Q 014154 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 172 (430)
. + ..+..+..+
T Consensus 301 ~-----------------------------------~---------------------------------S~cnDI~~~- 311 (459)
T KOG0288|consen 301 P-----------------------------------G---------------------------------SQCNDIVCS- 311 (459)
T ss_pred c-----------------------------------c---------------------------------ccccceEec-
Confidence 1 0 001111111
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014154 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 252 (430)
...+++|-.|++|++||.++..+..+...+ +.|+++.. ++++..|++++.|.++.+.|+++.. ...
T Consensus 312 -~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g----------g~vtSl~l--s~~g~~lLsssRDdtl~viDlRt~e-I~~ 377 (459)
T KOG0288|consen 312 -ISDVISGHFDKKVRFWDIRSADKTRSVPLG----------GRVTSLDL--SMDGLELLSSSRDDTLKVIDLRTKE-IRQ 377 (459)
T ss_pred -ceeeeecccccceEEEeccCCceeeEeecC----------cceeeEee--ccCCeEEeeecCCCceeeeeccccc-EEE
Confidence 345677888999999999998888887765 56999999 8899999999999999999999854 355
Q ss_pred EEeec----CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCC-CeEEEEecCCCCeEEEEeCCCcEEE
Q 014154 253 SFDFR----ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG-SIRSIARHPTLPIIASCGLDSYLRF 327 (430)
Q Consensus 253 ~~~~~----~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~s~~~dg~i~i 327 (430)
.+... ....+.+.|||++.|+++|+.||.|+||++.++++...+...+.. .|+++.|+|.|..|++++.++.+.+
T Consensus 378 ~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~l 457 (459)
T KOG0288|consen 378 TFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTL 457 (459)
T ss_pred EeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEe
Confidence 55432 234788999999999999999999999999999998888765233 6999999999999999999999999
Q ss_pred E
Q 014154 328 W 328 (430)
Q Consensus 328 w 328 (430)
|
T Consensus 458 W 458 (459)
T KOG0288|consen 458 W 458 (459)
T ss_pred c
Confidence 9
No 125
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=4.9e-24 Score=185.35 Aligned_cols=274 Identities=13% Similarity=0.117 Sum_probs=209.5
Q ss_pred CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
|.-+++||+. |.|+|||+... +....+..+.-....-++-.... .|||+.|++|+.-.++.|||+....+....+
T Consensus 430 ~trhVyTgGk-gcVKVWdis~p--g~k~PvsqLdcl~rdnyiRSckL--~pdgrtLivGGeastlsiWDLAapTprikae 504 (705)
T KOG0639|consen 430 PTRHVYTGGK-GCVKVWDISQP--GNKSPVSQLDCLNRDNYIRSCKL--LPDGRTLIVGGEASTLSIWDLAAPTPRIKAE 504 (705)
T ss_pred CcceeEecCC-CeEEEeeccCC--CCCCccccccccCcccceeeeEe--cCCCceEEeccccceeeeeeccCCCcchhhh
Confidence 3456777765 78999999874 22222333433333344555555 8899999999999999999997554332222
Q ss_pred ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC
Q 014154 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 172 (430)
.- . ..-....+.+.+.. ..+++|..+|.+.||++.... .|+.+. .|...+.||.+++
T Consensus 505 lt-s-----sapaCyALa~spDa--------kvcFsccsdGnI~vwDLhnq~--------~Vrqfq-GhtDGascIdis~ 561 (705)
T KOG0639|consen 505 LT-S-----SAPACYALAISPDA--------KVCFSCCSDGNIAVWDLHNQT--------LVRQFQ-GHTDGASCIDISK 561 (705)
T ss_pred cC-C-----cchhhhhhhcCCcc--------ceeeeeccCCcEEEEEcccce--------eeeccc-CCCCCceeEEecC
Confidence 10 0 00112223333332 488999999999999987443 555555 6778899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014154 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 252 (430)
+|..|.+|+.|++|+.||+++++.+....-. +.|.++.+ +|.+..|++|-.++.+.|....... ..
T Consensus 562 dGtklWTGGlDntvRcWDlregrqlqqhdF~----------SQIfSLg~--cP~~dWlavGMens~vevlh~skp~--ky 627 (705)
T KOG0639|consen 562 DGTKLWTGGLDNTVRCWDLREGRQLQQHDFS----------SQIFSLGY--CPTGDWLAVGMENSNVEVLHTSKPE--KY 627 (705)
T ss_pred CCceeecCCCccceeehhhhhhhhhhhhhhh----------hhheeccc--CCCccceeeecccCcEEEEecCCcc--ce
Confidence 9999999999999999999988776543321 66888888 8999999999999999998887644 46
Q ss_pred EEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 253 ~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~ 330 (430)
.+..|++-|.++.|.+.|+++++.+.|+.+..|...-|..+...+. .+.|.+...|.|.++|+||+.|..-.||.+
T Consensus 628 qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE--~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 628 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE--SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc--cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 6777999999999999999999999999999999988888877765 679999999999999999999988888764
No 126
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.1e-23 Score=173.19 Aligned_cols=277 Identities=14% Similarity=0.205 Sum_probs=201.0
Q ss_pred ceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccce-----
Q 014154 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA----- 90 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~----- 90 (430)
.+-|++.|.+.+||.++.+ +++.++.+|.+.|.++.| ++.+.++++++.|++..||...-.-.+..
T Consensus 162 i~gtASADhTA~iWs~Esg-----~CL~~Y~GH~GSVNsikf----h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~ 232 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESG-----ACLATYTGHTGSVNSIKF----HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPS 232 (481)
T ss_pred ceeecccccceeEEeeccc-----cceeeecccccceeeEEe----ccccceEEEccCCcchHHHHHhhcCcCCCCCCCC
Confidence 4578999999999999999 899999999999877666 56788999999999999997321100000
Q ss_pred -------eec---cCCC-----------------CCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeec
Q 014154 91 -------ISN---AGDS-----------------GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (430)
Q Consensus 91 -------~~~---~~~~-----------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~ 143 (430)
.+. +.+. .+.+|...+.+..|... ...+++++-|.+..+|+++.+
T Consensus 233 ~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g--------g~Q~vTaSWDRTAnlwDVEtg 304 (481)
T KOG0300|consen 233 DHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG--------GQQMVTASWDRTANLWDVETG 304 (481)
T ss_pred CCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC--------cceeeeeeccccceeeeeccC
Confidence 000 0000 00011111211112211 135666666667777776654
Q ss_pred CccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEeeCCCCCCCCCCcCCcceeEEEEe
Q 014154 144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (430)
Q Consensus 144 ~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (430)
. .+.+.. .|...++.++-+|..+++++.+.|.+.++||++.. ..+..+++|. ..|+++.|
T Consensus 305 e--------~v~~Lt-GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt---------dtVTS~vF- 365 (481)
T KOG0300|consen 305 E--------VVNILT-GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT---------DTVTSVVF- 365 (481)
T ss_pred c--------eecccc-CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccc---------cceeEEEE-
Confidence 3 333332 55677788888999999999999999999999743 3345566665 78999999
Q ss_pred ecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeee-----e
Q 014154 223 SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF-----I 297 (430)
Q Consensus 223 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~ 297 (430)
. .+..+++|+.|.+|++||+++.+.++.++.. .++++.++.+..+..|+.-..+..|++||+...+ +..+ +
T Consensus 366 -~-~dd~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R-laRlPrtsRq 441 (481)
T KOG0300|consen 366 -N-TDDRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR-LARLPRTSRQ 441 (481)
T ss_pred -e-cCCceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCc-cccCCccccc
Confidence 3 4568999999999999999999988888875 4789999999888899999888999999995444 3333 3
Q ss_pred CCCCCCeEEEEecCCCC--eEEEEeCCCcEEEEECCCC
Q 014154 298 GKCSGSIRSIARHPTLP--IIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 298 ~~~~~~v~~i~~~~~~~--~l~s~~~dg~i~iwd~~~~ 333 (430)
+| ..-|+|++|..+.. -|++++.|..+.-|.+...
T Consensus 442 gH-rRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 442 GH-RRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cc-ceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 66 78899999986543 4889999999999998653
No 127
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=2.5e-21 Score=173.55 Aligned_cols=268 Identities=11% Similarity=0.084 Sum_probs=189.3
Q ss_pred ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceE-EEEccCCeeEEEEeeecC
Q 014154 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTK 144 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~v~~~~~~~ 144 (430)
+++++++.|+.|.+||+.+++.+..+... ..+..+.+.+.. ..+ +++..++.+.+|++....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~---------~~~~~l~~~~dg--------~~l~~~~~~~~~v~~~d~~~~~ 64 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVG---------QRPRGITLSKDG--------KLLYVCASDSDTIQVIDLATGE 64 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECC---------CCCCceEECCCC--------CEEEEEECCCCeEEEEECCCCc
Confidence 46889999999999999988877776542 122334443322 234 566778899999865322
Q ss_pred ccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee
Q 014154 145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (430)
Q Consensus 145 ~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 223 (430)
.+..+. ....+..++++|+++.++++ ..++.|++||+.+.+.+..+... ..+.+++|
T Consensus 65 --------~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~----------~~~~~~~~-- 122 (300)
T TIGR03866 65 --------VIGTLP--SGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG----------VEPEGMAV-- 122 (300)
T ss_pred --------EEEecc--CCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC----------CCcceEEE--
Confidence 222222 23345678999999977655 56899999999987776665432 23567888
Q ss_pred cCCCCEEEEEeCCC-cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeEEeeeeCCC-
Q 014154 224 IDDHRKFVAGTNDH-QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKC- 300 (430)
Q Consensus 224 ~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~- 300 (430)
+|++.+++++..++ .+.+||..++.. ...+. ....+.+++|+|++++|++++ .++.|++||+++++.+..+..+.
T Consensus 123 ~~dg~~l~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~ 200 (300)
T TIGR03866 123 SPDGKIVVNTSETTNMAHFIDTKTYEI-VDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIP 200 (300)
T ss_pred CCCCCEEEEEecCCCeEEEEeCCCCeE-EEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc
Confidence 89999999988775 467789887543 33332 234567899999999886554 68999999999998876664220
Q ss_pred -----CCCeEEEEecCCCCeEEE-EeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-ccc-CCCCceEec
Q 014154 301 -----SGSIRSIARHPTLPIIAS-CGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAA-ADAPMLEIQ 372 (430)
Q Consensus 301 -----~~~v~~i~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~-~~d~~i~~~ 372 (430)
......+.|+|++++++. .+.++.|.+||+++++.+..+. . ...+.+++|+|+|.+ +++ ..++.|.+|
T Consensus 201 ~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~---~~~~~~~~~~~~g~~l~~~~~~~~~i~v~ 276 (300)
T TIGR03866 201 GVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-V---GQRVWQLAFTPDEKYLLTTNGVSNDVSVI 276 (300)
T ss_pred ccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-e---CCCcceEEECCCCCEEEEEcCCCCeEEEE
Confidence 112356889999998554 3556789999999888776532 1 234689999999998 444 568999999
Q ss_pred CCCCCc
Q 014154 373 NGNDTQ 378 (430)
Q Consensus 373 ~~~~~~ 378 (430)
+.....
T Consensus 277 d~~~~~ 282 (300)
T TIGR03866 277 DVAALK 282 (300)
T ss_pred ECCCCc
Confidence 988744
No 128
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=3.9e-22 Score=163.09 Aligned_cols=261 Identities=12% Similarity=0.122 Sum_probs=190.4
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..+++++-||+||+|+++....-.+ .....|.++ ++..+| +.||..+++|+.|+.+++||+.+++. ..+..
T Consensus 41 ~~~~A~SWD~tVR~wevq~~g~~~~---ka~~~~~~P--vL~v~W--sddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~- 111 (347)
T KOG0647|consen 41 NLLAAGSWDGTVRIWEVQNSGQLVP---KAQQSHDGP--VLDVCW--SDDGSKVFSGGCDKQAKLWDLASGQV-SQVAA- 111 (347)
T ss_pred ceEEecccCCceEEEEEecCCcccc---hhhhccCCC--eEEEEE--ccCCceEEeeccCCceEEEEccCCCe-eeeee-
Confidence 4566899999999999998311222 234457777 666777 66788999999999999999999963 34333
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
|..++..++|...... ..+++++-|.+++.|+..... .+....+ ...+.++.. ..
T Consensus 112 -------Hd~pvkt~~wv~~~~~------~cl~TGSWDKTlKfWD~R~~~--------pv~t~~L--PeRvYa~Dv--~~ 166 (347)
T KOG0647|consen 112 -------HDAPVKTCHWVPGMNY------QCLVTGSWDKTLKFWDTRSSN--------PVATLQL--PERVYAADV--LY 166 (347)
T ss_pred -------cccceeEEEEecCCCc------ceeEecccccceeecccCCCC--------eeeeeec--cceeeehhc--cC
Confidence 4568888888875431 367888888888888765332 2222222 234444333 45
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC-cceEE
Q 014154 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMS 253 (430)
Q Consensus 175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~ 253 (430)
.+++++..+..|.+|+++.+...+...... ..-.++|++.. ++....+.|+-.|.+.+..+..+. ..-..
T Consensus 167 pm~vVata~r~i~vynL~n~~te~k~~~Sp-------Lk~Q~R~va~f--~d~~~~alGsiEGrv~iq~id~~~~~~nFt 237 (347)
T KOG0647|consen 167 PMAVVATAERHIAVYNLENPPTEFKRIESP-------LKWQTRCVACF--QDKDGFALGSIEGRVAIQYIDDPNPKDNFT 237 (347)
T ss_pred ceeEEEecCCcEEEEEcCCCcchhhhhcCc-------ccceeeEEEEE--ecCCceEeeeecceEEEEecCCCCccCcee
Confidence 688889999999999997755433222211 11458888884 566667999999999999888742 22456
Q ss_pred EeecCC---------CeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEE
Q 014154 254 FDFRET---------PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 254 ~~~~~~---------~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~ 319 (430)
|+.|.. .|.+|+|+|.-..|++++.||+..+||-.....+...+.| ..+|++..|+.+|.+++-+
T Consensus 238 FkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~-~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 238 FKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH-PQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred EEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC-CCccceeEecCCCCEEEEE
Confidence 667752 5778999999999999999999999999888888888887 8999999999999988766
No 129
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=6.4e-21 Score=149.78 Aligned_cols=262 Identities=15% Similarity=0.173 Sum_probs=188.4
Q ss_pred ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccC
Q 014154 44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (430)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 123 (430)
+-..|.+.+++++ | +|+|++||+|+.|.+|++.-.+..... ..+ ....|..+++.|..+.+.+.....
T Consensus 84 r~khhkgsiyc~~--w--s~~geliatgsndk~ik~l~fn~dt~~--~~g-~dle~nmhdgtirdl~fld~~~s~----- 151 (350)
T KOG0641|consen 84 RNKHHKGSIYCTA--W--SPCGELIATGSNDKTIKVLPFNADTCN--ATG-HDLEFNMHDGTIRDLAFLDDPESG----- 151 (350)
T ss_pred eccccCccEEEEE--e--cCccCeEEecCCCceEEEEeccccccc--ccC-cceeeeecCCceeeeEEecCCCcC-----
Confidence 3345777765554 4 778999999999999999876533321 111 123455677889999998876522
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCC
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 203 (430)
+.++.....|...|+-..-.. ......+. .|.+.|.++ ++-++-.+++|+.|.+|++||++-..++..+...
T Consensus 152 ~~il~s~gagdc~iy~tdc~~------g~~~~a~s-ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~ 223 (350)
T KOG0641|consen 152 GAILASAGAGDCKIYITDCGR------GQGFHALS-GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDND 223 (350)
T ss_pred ceEEEecCCCcceEEEeecCC------CCcceeec-CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCc
Confidence 455555555555554332111 11222232 344555544 2226789999999999999999887777766543
Q ss_pred CCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEE
Q 014154 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA 283 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~ 283 (430)
... +....+.|.+++. .|.|++|++|-.|....+||++.++ +++.+..|...|.|+.|+|...|+++++.|..|+
T Consensus 224 ~~~--~glessavaav~v--dpsgrll~sg~~dssc~lydirg~r-~iq~f~phsadir~vrfsp~a~yllt~syd~~ik 298 (350)
T KOG0641|consen 224 FHD--GGLESSAVAAVAV--DPSGRLLASGHADSSCMLYDIRGGR-MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIK 298 (350)
T ss_pred ccC--CCcccceeEEEEE--CCCcceeeeccCCCceEEEEeeCCc-eeeeeCCCccceeEEEeCCCceEEEEecccceEE
Confidence 211 1112356888888 8999999999999999999999855 7999999999999999999999999999999999
Q ss_pred EEEccCC---eE-EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154 284 SVDIRTG---KL-LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 284 iwd~~~~---~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
+-|++.. ++ +.....| ...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 299 ltdlqgdla~el~~~vv~eh-kdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 299 LTDLQGDLAHELPIMVVAEH-KDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EeecccchhhcCceEEEEec-cCceEEEEecCccceeeeccCcceEEEeccC
Confidence 9998531 22 3333445 7888889999999889999999999999764
No 130
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=9.2e-22 Score=161.46 Aligned_cols=256 Identities=13% Similarity=0.118 Sum_probs=192.9
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..|+.++-||++++|++... .+...+. |..+ ++..+|.+ ...+++|+.||.|+.+|+.++.....-
T Consensus 26 ~~LLvssWDgslrlYdv~~~-----~l~~~~~-~~~p--lL~c~F~d---~~~~~~G~~dg~vr~~Dln~~~~~~ig--- 91 (323)
T KOG1036|consen 26 SDLLVSSWDGSLRLYDVPAN-----SLKLKFK-HGAP--LLDCAFAD---ESTIVTGGLDGQVRRYDLNTGNEDQIG--- 91 (323)
T ss_pred CcEEEEeccCcEEEEeccch-----hhhhhee-cCCc--eeeeeccC---CceEEEeccCceEEEEEecCCcceeec---
Confidence 56888889999999999985 4444444 6677 56666633 245999999999999999877643221
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
.|..++.++...... +.+++++-|+++.+|+..... .+........|.++.. .+
T Consensus 92 ------th~~~i~ci~~~~~~--------~~vIsgsWD~~ik~wD~R~~~----------~~~~~d~~kkVy~~~v--~g 145 (323)
T KOG1036|consen 92 ------THDEGIRCIEYSYEV--------GCVISGSWDKTIKFWDPRNKV----------VVGTFDQGKKVYCMDV--SG 145 (323)
T ss_pred ------cCCCceEEEEeeccC--------CeEEEcccCccEEEEeccccc----------cccccccCceEEEEec--cC
Confidence 245677777776443 599999999999999976321 1122233456777666 58
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC---cce
Q 014154 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---RPV 251 (430)
Q Consensus 175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~ 251 (430)
+.|++|+.+..+.+||+++............ .-.+.|+++ -|++.=+++++-||.|.+=.+.... ...
T Consensus 146 ~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l-------kyqtR~v~~--~pn~eGy~~sSieGRVavE~~d~s~~~~skk 216 (323)
T KOG1036|consen 146 NRLVVGTSDRKVLIYDLRNLDEPFQRRESSL-------KYQTRCVAL--VPNGEGYVVSSIEGRVAVEYFDDSEEAQSKK 216 (323)
T ss_pred CEEEEeecCceEEEEEcccccchhhhccccc-------eeEEEEEEE--ecCCCceEEEeecceEEEEccCCchHHhhhc
Confidence 8999999999999999987665443222211 146889999 4577778888999999886666531 224
Q ss_pred EEEeecC---------CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe
Q 014154 252 MSFDFRE---------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 252 ~~~~~~~---------~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~ 320 (430)
..|+.|. .+|.+|+|+|-...|++|+.||.|.+||+.+.+.+..+... ...|..++|+.+|..||+++
T Consensus 217 yaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~-~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 217 YAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY-ETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred eeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC-CCceEEEEeccCCCeEEEEe
Confidence 5666664 37999999999999999999999999999999999999887 77899999999999999986
No 131
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=2.6e-22 Score=174.46 Aligned_cols=296 Identities=10% Similarity=0.092 Sum_probs=213.5
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEe--ecCCeEEEecCCCCcccceee
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVA--RKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g--~~dg~i~iwd~~~~~~~~~~~ 92 (430)
+++++++ ..+++||+... .....+-.|..+..+..++|... ++|+++ +.|..|++|.- .|+ +.++.
T Consensus 5 l~~aS~g--d~~kl~D~s~~-----~~~~~~~~~t~~pg~~s~~w~~~---n~lvvas~~gdk~~~~~~K-~g~-~~~Vp 72 (673)
T KOG4378|consen 5 LHVASTG--DKTKLSDFSDL-----ETKSEYVHQTAEPGDFSFNWQRR---NFLVVASMAGDKVMRIKEK-DGK-TPEVP 72 (673)
T ss_pred eeeeccC--CceEEeecccc-----cCccccccCCCCCcceeeecccc---ceEEEeecCCceeEEEecc-cCC-CCccc
Confidence 4444444 58999999886 34444555555555777887333 335554 46778999963 344 33332
Q ss_pred ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC
Q 014154 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 172 (430)
.+.... .+.-.++...... -++++++.++.+.||++... .+..+-..|...|+++.++.
T Consensus 73 ~~~k~~----gd~~~Cv~~~s~S--------~y~~sgG~~~~Vkiwdl~~k---------l~hr~lkdh~stvt~v~YN~ 131 (673)
T KOG4378|consen 73 RVRKLT----GDNAFCVACASQS--------LYEISGGQSGCVKIWDLRAK---------LIHRFLKDHQSTVTYVDYNN 131 (673)
T ss_pred eeeccc----cchHHHHhhhhcc--------eeeeccCcCceeeehhhHHH---------HHhhhccCCcceeEEEEecC
Confidence 211110 0111112222211 37888999999999998622 34444456788999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC-CEEEEEeCCCcEEEEECCCCCcce
Q 014154 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQRRPV 251 (430)
Q Consensus 173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~ 251 (430)
...+||+++..|.|.|..+.++.....+....+ ..|.-+.| ++.. .+|.+++.+|.|.+||........
T Consensus 132 ~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sg--------qsvRll~y--s~skr~lL~~asd~G~VtlwDv~g~sp~~ 201 (673)
T KOG4378|consen 132 TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSG--------QSVRLLRY--SPSKRFLLSIASDKGAVTLWDVQGMSPIF 201 (673)
T ss_pred CcceeEEeccCCcEEEEecccCccccceecCCC--------CeEEEeec--ccccceeeEeeccCCeEEEEeccCCCccc
Confidence 999999999999999999998877666654432 45678888 4544 467789999999999999765444
Q ss_pred EEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154 252 MSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 252 ~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~ 330 (430)
.....|..+...|+|+|.. .+|++.+.|..|.+||.+..+....+.. ..+...++|+++|.+|+.|...|.|..||+
T Consensus 202 ~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y--~~Plstvaf~~~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 202 HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY--SHPLSTVAFSECGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred chhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee--cCCcceeeecCCceEEEeecCCceEEEEec
Confidence 5566799999999999966 6778889999999999998877777765 568999999999999999999999999999
Q ss_pred CCC-ceeeEEEeeccccceEEeeeccccc
Q 014154 331 KTR-QLLSAVFLKQHLNEVVFDSAFADKE 358 (430)
Q Consensus 331 ~~~-~~~~~~~~~~~~~~~v~~~~~s~~g 358 (430)
+.. .++.+ +..| ...|++++|-|.-
T Consensus 280 R~~k~Pv~v--~sah-~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 280 RSTKAPVAV--RSAH-DASVTRVAFQPSP 305 (673)
T ss_pred ccCCCCceE--eeec-ccceeEEEeeecc
Confidence 864 45555 5667 4558999998764
No 132
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=1.6e-21 Score=174.49 Aligned_cols=300 Identities=13% Similarity=0.185 Sum_probs=205.7
Q ss_pred CCCCC--cceeeecCCCceEEEEccCCCCCcc-eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc
Q 014154 10 PGCPP--LRALTFDSLGLIKVIEARGEHGGVP-KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD 86 (430)
Q Consensus 10 ~~~~~--~~l~t~~~dg~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~ 86 (430)
+.||. =.|+.+++||.|.++|......... ..+..+..|... ++.+.| -|-...|++++.|.++++||+.+++
T Consensus 58 s~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nA--ifDl~w--apge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 58 SAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNA--IFDLKW--APGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccce--eEeecc--CCCceeEEEccCCceeeeeeeccce
Confidence 34555 3578899999999999887421111 113456668777 666666 6645578889999999999999888
Q ss_pred ccce--eeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc---------cccCCC----
Q 014154 87 LRVA--ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV---------SAESSC---- 151 (430)
Q Consensus 87 ~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---------~~~~~~---- 151 (430)
+... +.+ |...+.++++...+. ..|++|+.||.+.||++..... +++...
T Consensus 134 l~G~~~~~G--------H~~SvkS~cf~~~n~-------~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt 198 (720)
T KOG0321|consen 134 LVGGRLNLG--------HTGSVKSECFMPTNP-------AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT 198 (720)
T ss_pred eecceeecc--------cccccchhhhccCCC-------cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence 7665 333 445666677777666 7999999999999999876542 111111
Q ss_pred ------cceEEeeecCCCceEE---EEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEeeCCCCCCCCCCcC--CcceeEE
Q 014154 152 ------STVKSWNVCASGTIAF---SKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFT--PTWFTSA 219 (430)
Q Consensus 152 ------~~i~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~ 219 (430)
..++-|. .+...|.. +-+..|...||+++. |+.|+|||++...............+.... ...+.++
T Consensus 199 pskp~~kr~~k~k-A~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL 277 (720)
T KOG0321|consen 199 PSKPLKKRIRKWK-AASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNL 277 (720)
T ss_pred CCchhhccccccc-cccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEE
Confidence 1233333 22334444 444558888998887 999999999876555443332222221110 1234555
Q ss_pred EEeecCCCCEEEEEeCCCcEEEEECCCCC-cceEEEeecCC---CeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE-Ee
Q 014154 220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRET---PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LG 294 (430)
Q Consensus 220 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~---~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~-~~ 294 (430)
.. ...|.+|+..+.|+.|++|++.... .|+..+.++.. .+. -..+|++.+|++|+.|...++|.+.+.+. ..
T Consensus 278 ~l--DssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vk-s~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 278 IL--DSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVK-SELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred Ee--cCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeee-eecCCCCceEeccCCCcceeeeeecCccCChh
Confidence 55 5667877777779999999998633 34555555421 122 23589999999999999999999987765 55
Q ss_pred eeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEEEECCCC
Q 014154 295 CFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 295 ~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~~~ 333 (430)
.+.+| ...|++++|.|.. .-++++++|..++||++..+
T Consensus 355 ~l~Gh-t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 355 LLLGH-TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhhCc-ceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 67787 8999999999854 34778899999999999654
No 133
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.1e-23 Score=189.20 Aligned_cols=237 Identities=12% Similarity=0.162 Sum_probs=184.7
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..++|++..|.|.+||+... ...+++..|.+|...+..+.|... .-.+|++|+.||+|++||++..+-..++.+
T Consensus 101 NlIAT~s~nG~i~vWdlnk~--~rnk~l~~f~EH~Rs~~~ldfh~t---ep~iliSGSQDg~vK~~DlR~~~S~~t~~~- 174 (839)
T KOG0269|consen 101 NLIATCSTNGVISVWDLNKS--IRNKLLTVFNEHERSANKLDFHST---EPNILISGSQDGTVKCWDLRSKKSKSTFRS- 174 (839)
T ss_pred hhheeecCCCcEEEEecCcc--ccchhhhHhhhhccceeeeeeccC---CccEEEecCCCceEEEEeeecccccccccc-
Confidence 56889999999999999882 222677789999999777776542 226899999999999999987776665544
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
....+..+.|.+... ..++++..+|.+..|++.+... ..+.+. +|.++|.|+.|+|++
T Consensus 175 -------nSESiRDV~fsp~~~-------~~F~s~~dsG~lqlWDlRqp~r-------~~~k~~-AH~GpV~c~nwhPnr 232 (839)
T KOG0269|consen 175 -------NSESIRDVKFSPGYG-------NKFASIHDSGYLQLWDLRQPDR-------CEKKLT-AHNGPVLCLNWHPNR 232 (839)
T ss_pred -------cchhhhceeeccCCC-------ceEEEecCCceEEEeeccCchh-------HHHHhh-cccCceEEEeecCCC
Confidence 234666677776655 6899999999999999986543 333333 689999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCee--eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe--CCCcEEEEECCCCCcc
Q 014154 175 KFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--NDHQVRLYDTSAQRRP 250 (430)
Q Consensus 175 ~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~ 250 (430)
.+||+|+.|++|+|||+.+.+. +.++.. ..+|.+++|. +.....|++++ .|-.|+|||++....|
T Consensus 233 ~~lATGGRDK~vkiWd~t~~~~~~~~tInT----------iapv~rVkWR-P~~~~hLAtcsmv~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 233 EWLATGGRDKMVKIWDMTDSRAKPKHTINT----------IAPVGRVKWR-PARSYHLATCSMVVDTSVHVWDVRRPYIP 301 (839)
T ss_pred ceeeecCCCccEEEEeccCCCccceeEEee----------cceeeeeeec-cCccchhhhhhccccceEEEEeecccccc
Confidence 9999999999999999976443 222222 2679999995 22345677776 4778999999998888
Q ss_pred eEEEeecCCCeEEEEecC-CCCEEEEEeCCCcEEEEEccCC
Q 014154 251 VMSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTG 290 (430)
Q Consensus 251 ~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~ 290 (430)
..++..|...++.++|.. |...+.+++.|++|..-.+++.
T Consensus 302 ~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 302 YATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 999999999999999954 5578899999998876655544
No 134
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=6.8e-22 Score=176.87 Aligned_cols=307 Identities=13% Similarity=0.128 Sum_probs=209.1
Q ss_pred CCCCcceeeeeecCCCCC-ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceE
Q 014154 48 PHSSNCVLAASIDDSQND-PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (430)
Q Consensus 48 ~~~~~~~~~~~~~~~p~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 126 (430)
+..++..++.+|...|.- ..||.+..||.|.++|....... ++.-.-..+..|.+.|..+.|.+.+ ..|
T Consensus 46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr--~ee~~lk~~~aH~nAifDl~wapge--------~~l 115 (720)
T KOG0321|consen 46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR--LEERQLKKPLAHKNAIFDLKWAPGE--------SLL 115 (720)
T ss_pred CCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcc--hhhhhhcccccccceeEeeccCCCc--------eeE
Confidence 444444544555444443 46888999999999998644322 1111112244677788888888844 489
Q ss_pred EEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCee--e-----E
Q 014154 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEK--I-----W 198 (430)
Q Consensus 127 ~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~--~-----~ 198 (430)
++++.|.++++|++..+.. +|. + ..+.|...|.+++|.| +...|++|+.||.|.|||++-... . .
T Consensus 116 VsasGDsT~r~Wdvk~s~l-----~G~-~-~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~ 188 (720)
T KOG0321|consen 116 VSASGDSTIRPWDVKTSRL-----VGG-R-LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNR 188 (720)
T ss_pred EEccCCceeeeeeecccee-----ecc-e-eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhh
Confidence 9999999999999986542 111 1 3458889999999999 567888999999999999863220 0 0
Q ss_pred eeCCCCC---C--------CCCCcC----CcceeEEEEeecCCCCEEEEEeC-CCcEEEEECCCCCcc-----eE--EEe
Q 014154 199 TAKPPPK---N--------SLGIFT----PTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRP-----VM--SFD 255 (430)
Q Consensus 199 ~~~~~~~---~--------~~~~~~----~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~-----~~--~~~ 255 (430)
....+.. + .....+ ...|+.+.| .|...||+++. |+.|+|||++..... .. .+.
T Consensus 189 ~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f---kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~ 265 (720)
T KOG0321|consen 189 IYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF---KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYP 265 (720)
T ss_pred hhccccCCCCCCchhhccccccccccCceeeeeEEEEE---eccceeeeccCCCcceEEEeecccccccccCCCcccCcc
Confidence 0000110 0 000011 133666666 57889999888 999999999974431 11 122
Q ss_pred ec---CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe--EEeeeeCCCCCCeE-EEEecCCCCeEEEEeCCCcEEEEE
Q 014154 256 FR---ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--LLGCFIGKCSGSIR-SIARHPTLPIIASCGLDSYLRFWD 329 (430)
Q Consensus 256 ~~---~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~-~i~~~~~~~~l~s~~~dg~i~iwd 329 (430)
.| .-.+.++.....|.+|++.+.|+.|++||+.... ++..+.++....++ .-..+|++.+|++|+.|...++|.
T Consensus 266 t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~ 345 (720)
T KOG0321|consen 266 THSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWV 345 (720)
T ss_pred CcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeee
Confidence 23 2356777777788999999999999999998643 45555554222222 234689999999999999999999
Q ss_pred CCCCceeeEEEeeccccceEEeeeccccc--cccccCCCCceEecCCCC
Q 014154 330 IKTRQLLSAVFLKQHLNEVVFDSAFADKE--VANAAADAPMLEIQNGND 376 (430)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~~~~~~d~~i~~~~~~~ 376 (430)
+.+.+.-..+ +.|| .-.|+.++|.|.. ..+++++|..+++|+...
T Consensus 346 vs~~e~~~~~-l~Gh-t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 346 VSSPEAPPAL-LLGH-TREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred ecCccCChhh-hhCc-ceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 9886655443 6678 4456999998864 458889999999999854
No 135
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=9.7e-22 Score=160.24 Aligned_cols=221 Identities=18% Similarity=0.252 Sum_probs=166.4
Q ss_pred ecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCee------eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE
Q 014154 159 VCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEK------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (430)
Q Consensus 159 ~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 231 (430)
-.|++.|.++.+.+ .++++++|+.||.|.+||++.... +......-.....-.|.-.|..+.|. +-|...+.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~Wy-P~DtGmFt 118 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWY-PIDTGMFT 118 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEe-eecCceee
Confidence 35789999999988 789999999999999999975321 11100000000011233568888886 34566889
Q ss_pred EEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCC---CEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEE
Q 014154 232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS---FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIA 308 (430)
Q Consensus 232 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~ 308 (430)
+++.|.++++||.++.+. ...|+. ++.|.+-++||-. -++++|..+-.|++.|+.+|...+.+.+| ...|.++.
T Consensus 119 ssSFDhtlKVWDtnTlQ~-a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGH-r~~vlaV~ 195 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQE-AVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGH-RDGVLAVE 195 (397)
T ss_pred cccccceEEEeeccccee-eEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccc-cCceEEEE
Confidence 999999999999998553 445543 4678888888854 47788888999999999999999999999 99999999
Q ss_pred ecCCCCe-EEEEeCCCcEEEEECCCC-ceeeEEE------------eeccccceEEeeeccccccc-cccCCCCceEecC
Q 014154 309 RHPTLPI-IASCGLDSYLRFWDIKTR-QLLSAVF------------LKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQN 373 (430)
Q Consensus 309 ~~~~~~~-l~s~~~dg~i~iwd~~~~-~~~~~~~------------~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~ 373 (430)
|+|...+ |++|+.||.|++||++.. .+...+. -..| .+.++.++|+.+|.+ ++.+.|..+++|+
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah-~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAH-YGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccc-cceeeeeeecccchhhhhccCccceEEee
Confidence 9998865 689999999999999754 3333311 1123 455799999999999 9999999999999
Q ss_pred CCCCccccccc
Q 014154 374 GNDTQEDATET 384 (430)
Q Consensus 374 ~~~~~~~~~~~ 384 (430)
.........+.
T Consensus 275 ~~~G~ntl~~~ 285 (397)
T KOG4283|consen 275 MESGRNTLREF 285 (397)
T ss_pred cccCccccccc
Confidence 87755444433
No 136
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.5e-21 Score=168.34 Aligned_cols=285 Identities=12% Similarity=0.145 Sum_probs=203.5
Q ss_pred cCCCCCCC--cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCc-eeEEeecCCeEEEecCC
Q 014154 7 LECPGCPP--LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDP-LLAVARKNGLTDILNPL 83 (430)
Q Consensus 7 ~~~~~~~~--~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~-~l~~g~~dg~i~iwd~~ 83 (430)
++|....| -.|++|+.||+++||.+.+.. -..++.+.-...++. ...| .|+|. .+++++....+..||+.
T Consensus 216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~---N~~lqS~~l~~fPi~--~a~f--~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV---NPKLQSIHLEKFPIQ--KAEF--APNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred ceEEEecCCCceEEEecCCCcEEEEEecCcc---ChhheeeeeccCccc--eeee--cCCCceEEEecccceEEEEeecc
Confidence 34444444 357899999999999998741 123444433445533 4444 66777 88999999999999998
Q ss_pred CCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCC
Q 014154 84 NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG 163 (430)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~ 163 (430)
+.+....-... +. .-..+..+...... ..++..+..|.+.+....... .|..+. -.+
T Consensus 289 ~ak~~k~~~~~------g~--e~~~~e~FeVShd~-----~fia~~G~~G~I~lLhakT~e--------li~s~K--ieG 345 (514)
T KOG2055|consen 289 TAKVTKLKPPY------GV--EEKSMERFEVSHDS-----NFIAIAGNNGHIHLLHAKTKE--------LITSFK--IEG 345 (514)
T ss_pred ccccccccCCC------Cc--ccchhheeEecCCC-----CeEEEcccCceEEeehhhhhh--------hhheee--ecc
Confidence 87743321110 01 11123333322211 477777777877776543322 233333 358
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEE
Q 014154 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (430)
.|..++|+.+++.|++++.+|.|++||++...+++.+... +.|....+.+++++.+||+|+..|.|.|||
T Consensus 346 ~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~----------G~v~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 346 VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD----------GSVHGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec----------CccceeeeeecCCCceEEeccCcceEEEec
Confidence 8999999999999999999999999999998888777654 334444554488999999999999999999
Q ss_pred CCC-----CCcceEEEeecCCCeEEEEecCCCCEEEEEeC--CCcEEEEEccCCeEEeeeeCC--CCCCeEEEEecCCCC
Q 014154 244 TSA-----QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG--SGDLASVDIRTGKLLGCFIGK--CSGSIRSIARHPTLP 314 (430)
Q Consensus 244 ~~~-----~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~--~~~~v~~i~~~~~~~ 314 (430)
.++ ..+|+..+..-...|+++.|+|+.+.|+.++. ...+++--+.+......+... .-+.|+|++|+|.+.
T Consensus 416 ~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG 495 (514)
T KOG2055|consen 416 GNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSG 495 (514)
T ss_pred cchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCc
Confidence 764 22356666666678999999999999988874 577999888877766666532 134689999999999
Q ss_pred eEEEEeCCCcEEEEECC
Q 014154 315 IIASCGLDSYLRFWDIK 331 (430)
Q Consensus 315 ~l~s~~~dg~i~iwd~~ 331 (430)
+|+.|..+|.|.+|.+.
T Consensus 496 ~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 496 YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eEEeecCCCceeeEeec
Confidence 99999999999999874
No 137
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=6.8e-21 Score=172.07 Aligned_cols=332 Identities=12% Similarity=0.090 Sum_probs=234.5
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCC-cceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS-NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
..|++++.|.++.+|..... .|+.....++++-.+. ....+.-| +|+++.+++-+..|..++|...+.. ......
T Consensus 280 ~~LLSASaDksmiiW~pd~~-tGiWv~~vRlGe~gg~a~GF~g~lw--~~n~~~ii~~g~~Gg~hlWkt~d~~-~w~~~~ 355 (764)
T KOG1063|consen 280 LDLLSASADKSMIIWKPDEN-TGIWVDVVRLGEVGGSAGGFWGGLW--SPNSNVIIAHGRTGGFHLWKTKDKT-FWTQEP 355 (764)
T ss_pred hhheecccCcceEEEecCCc-cceEEEEEEeecccccccceeeEEE--cCCCCEEEEecccCcEEEEeccCcc-ceeecc
Confidence 58999999999999999875 5777777777764422 22455556 8888999998999999999832211 111111
Q ss_pred cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee-----------------------ecC-c---c
Q 014154 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE-----------------------VTK-V---S 146 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~-----------------------~~~-~---~ 146 (430)
..++|.+.+..+.|-+.. ..+++.+.|.+-+++.-- +-+ + +
T Consensus 356 ----~iSGH~~~V~dv~W~psG--------eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FV 423 (764)
T KOG1063|consen 356 ----VISGHVDGVKDVDWDPSG--------EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFV 423 (764)
T ss_pred ----ccccccccceeeeecCCC--------CEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceee
Confidence 133455666666654433 377777777777666532 000 0 3
Q ss_pred ccCCCcceEEeeec------------------------------------------------------------------
Q 014154 147 AESSCSTVKSWNVC------------------------------------------------------------------ 160 (430)
Q Consensus 147 ~~~~~~~i~~~~~~------------------------------------------------------------------ 160 (430)
+++++..+|+|+..
T Consensus 424 SgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~eP 503 (764)
T KOG1063|consen 424 SGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEP 503 (764)
T ss_pred ecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCC
Confidence 44444455555432
Q ss_pred --------------------CCCceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeeEeeCCCCCCCCCCcCCcc
Q 014154 161 --------------------ASGTIAFSKVDISEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW 215 (430)
Q Consensus 161 --------------------~~~~i~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (430)
|+..|.+++.+|+++++|+++... .|++|+..+-.....+..|. -.
T Consensus 504 P~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~Hs---------LT 574 (764)
T KOG1063|consen 504 PTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHS---------LT 574 (764)
T ss_pred ChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccc---------eE
Confidence 124699999999999999988654 48999998877777777775 67
Q ss_pred eeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcce---EEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC--
Q 014154 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV---MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-- 290 (430)
Q Consensus 216 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-- 290 (430)
|+.++| +||+++|++.+.|.++.+|........- ...+.|..-|.++.|+|++.+++|++.|.+|.+|.....
T Consensus 575 VT~l~F--Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d 652 (764)
T KOG1063|consen 575 VTRLAF--SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD 652 (764)
T ss_pred EEEEEE--CCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh
Confidence 999999 9999999999999999999986543322 236679889999999999999999999999999998877
Q ss_pred eEEee--eeCCCCCCeEEEEecCC-----CCeEEEEeCCCcEEEEECCCC-ce--eeEEE----e---eccccceEEeee
Q 014154 291 KLLGC--FIGKCSGSIRSIARHPT-----LPIIASCGLDSYLRFWDIKTR-QL--LSAVF----L---KQHLNEVVFDSA 353 (430)
Q Consensus 291 ~~~~~--~~~~~~~~v~~i~~~~~-----~~~l~s~~~dg~i~iwd~~~~-~~--~~~~~----~---~~~~~~~v~~~~ 353 (430)
+.+.. ...+ ...|++++|.|- +..++.|-..|.|.+|....- +. +..+. + .+| ...|..+.
T Consensus 653 ~~i~~~a~~~~-~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~aV~rl~ 730 (764)
T KOG1063|consen 653 KYISRFACLKF-SLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGP-DSAVNRLL 730 (764)
T ss_pred hhhhhhchhcc-CCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccCh-HHhhheeE
Confidence 43333 2233 778999999872 236788889999999996511 10 01110 1 122 44578889
Q ss_pred cccc---------ccc--cccCCCCceEecCCC
Q 014154 354 FADK---------EVA--NAAADAPMLEIQNGN 375 (430)
Q Consensus 354 ~s~~---------g~~--~~~~~d~~i~~~~~~ 375 (430)
|.|. +.+ +++++|..+++++.+
T Consensus 731 w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 731 WRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eccccccccccccceeEEeeecccceeEEeecc
Confidence 9875 223 889999999999864
No 138
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.4e-21 Score=180.34 Aligned_cols=230 Identities=14% Similarity=0.135 Sum_probs=184.3
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCC
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 203 (430)
..+++++.+|.+++|....... .-..|.+ ++..|.+++. .+++|++|+.+++|.+|.+..++.-..+...
T Consensus 26 efi~tcgsdg~ir~~~~~sd~e----~P~ti~~----~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rf 95 (933)
T KOG1274|consen 26 EFICTCGSDGDIRKWKTNSDEE----EPETIDI----SGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILARF 95 (933)
T ss_pred CEEEEecCCCceEEeecCCccc----CCchhhc----cCceeEEEee--cccceEEeeccceEEEeeCCCCCccceeeee
Confidence 5889999999999998643311 0012211 4566776666 4569999999999999999876542111111
Q ss_pred CCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEE
Q 014154 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA 283 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~ 283 (430)
.-++++++| +.+|.+++.|+.|-.|++.++..... ...+.+|.++|.++.|+|.+++||+.+.||.|+
T Consensus 96 ---------tlp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~-~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~ 163 (933)
T KOG1274|consen 96 ---------TLPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQ-EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQ 163 (933)
T ss_pred ---------eccceEEEE--ecCCcEEEeecCceeEEEEeccccch-heeecccCCceeeeeEcCCCCEEEEEecCceEE
Confidence 145889999 78999999999999999999998654 788999999999999999999999999999999
Q ss_pred EEEccCCeEEeeeeCC------C-CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154 284 SVDIRTGKLLGCFIGK------C-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 284 iwd~~~~~~~~~~~~~------~-~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~ 356 (430)
+||+.++.+...+.+- . ...+..++|+|++..++..+.|+.|.+|+..++.....+....+ ...+..+.|+|
T Consensus 164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~-ss~~~~~~wsP 242 (933)
T KOG1274|consen 164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLS-SSKFSDLQWSP 242 (933)
T ss_pred EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccc-ccceEEEEEcC
Confidence 9999998877666532 1 34567899999988888888999999999999999988644444 44479999999
Q ss_pred cccc-cccCCCCceEecCCCC
Q 014154 357 KEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 357 ~g~~-~~~~~d~~i~~~~~~~ 376 (430)
+|+| ++++.+|.|.||+.+.
T Consensus 243 nG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 243 NGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CCcEEeeeccCCcEEEEeccc
Confidence 9999 8899999999999984
No 139
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.5e-20 Score=169.43 Aligned_cols=318 Identities=13% Similarity=0.089 Sum_probs=222.4
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCC-CCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDP-HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
..|+.+-++|.|-||++..+- -+...+.++ ... +-+++| . +|..|.+.+.+|.|.-||+.++++...+..
T Consensus 38 ~~lAvsRt~g~IEiwN~~~~w----~~~~vi~g~~drs--IE~L~W--~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~ 108 (691)
T KOG2048|consen 38 NQLAVSRTDGNIEIWNLSNNW----FLEPVIHGPEDRS--IESLAW--A-EGGRLFSSGLSGSITEWDLHTLKQKYNIDS 108 (691)
T ss_pred CceeeeccCCcEEEEccCCCc----eeeEEEecCCCCc--eeeEEE--c-cCCeEEeecCCceEEEEecccCceeEEecC
Confidence 458889999999999999851 222344443 344 455555 2 345689999999999999999998777653
Q ss_pred cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceE---EeeecCCCceEEEEE
Q 014154 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVK---SWNVCASGTIAFSKV 170 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~---~~~~~~~~~i~~~~~ 170 (430)
....|-++...+... .+..++.+|.+..+ ..+++ .|. .+. ...+.|.+++|
T Consensus 109 --------~gg~IWsiai~p~~~--------~l~IgcddGvl~~~--s~~p~-------~I~~~r~l~-rq~sRvLslsw 162 (691)
T KOG2048|consen 109 --------NGGAIWSIAINPENT--------ILAIGCDDGVLYDF--SIGPD-------KITYKRSLM-RQKSRVLSLSW 162 (691)
T ss_pred --------CCcceeEEEeCCccc--------eEEeecCCceEEEE--ecCCc-------eEEEEeecc-cccceEEEEEe
Confidence 335677777766554 77778888844444 33332 221 222 23578999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc
Q 014154 171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (430)
Q Consensus 171 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 250 (430)
+|++..|+.|+.||.|++||...+..+..... +...+.-..+.-|.++.|. ....|++|..-|+|.+||...+. .
T Consensus 163 ~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~-~~d~l~k~~~~iVWSv~~L---rd~tI~sgDS~G~V~FWd~~~gT-L 237 (691)
T KOG2048|consen 163 NPTGTKIAGGSIDGVIRIWDVKSGQTLHIITM-QLDRLSKREPTIVWSVLFL---RDSTIASGDSAGTVTFWDSIFGT-L 237 (691)
T ss_pred cCCccEEEecccCceEEEEEcCCCceEEEeee-cccccccCCceEEEEEEEe---ecCcEEEecCCceEEEEcccCcc-h
Confidence 99999999999999999999998877662111 1111111122458888885 44589999999999999999866 4
Q ss_pred eEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE---EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEE
Q 014154 251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL---LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF 327 (430)
Q Consensus 251 ~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~i 327 (430)
++.+..|.+.|.+++..+++.++++++.|+.|..|...+... ....+.+|...|.+++..++ .+++|+.|..+.+
T Consensus 238 iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 238 IQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred hhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 888889999999999999999999999999999998876643 22222333778888887666 6777777776655
Q ss_pred EECCC------------------------------------------C--------ceeeEEEeeccccceEEeeecccc
Q 014154 328 WDIKT------------------------------------------R--------QLLSAVFLKQHLNEVVFDSAFADK 357 (430)
Q Consensus 328 wd~~~------------------------------------------~--------~~~~~~~~~~~~~~~v~~~~~s~~ 357 (430)
-.... . ..+..+.++. ...+.+.+.||+
T Consensus 316 ~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~--~~nIs~~aiSPd 393 (691)
T KOG2048|consen 316 CSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKE--KENISCAAISPD 393 (691)
T ss_pred ccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCC--ccceeeeccCCC
Confidence 43321 0 0011111111 234688999999
Q ss_pred ccccccCCCCceEecCCCC
Q 014154 358 EVANAAADAPMLEIQNGND 376 (430)
Q Consensus 358 g~~~~~~~d~~i~~~~~~~ 376 (430)
|.+++-+.-..+++|....
T Consensus 394 g~~Ia~st~~~~~iy~L~~ 412 (691)
T KOG2048|consen 394 GNLIAISTVSRTKIYRLQP 412 (691)
T ss_pred CCEEEEeeccceEEEEecc
Confidence 9997777767777777665
No 140
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.4e-20 Score=154.45 Aligned_cols=276 Identities=10% Similarity=0.120 Sum_probs=187.1
Q ss_pred CCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCce
Q 014154 46 GDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (430)
Q Consensus 46 ~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 125 (430)
.+|.+-+.++.|. +.|+.+|+++.|++|+|||.....-...+... ...|+..|..+.|.+++- +..
T Consensus 10 s~h~DlihdVs~D----~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~----Wrah~~Si~rV~WAhPEf------Gqv 75 (361)
T KOG2445|consen 10 SGHKDLIHDVSFD----FYGRRMATCSSDQTVKIWDSTSDSGTWSCTSS----WRAHDGSIWRVVWAHPEF------GQV 75 (361)
T ss_pred cCCcceeeeeeec----ccCceeeeccCCCcEEEEeccCCCCceEEeee----EEecCCcEEEEEecCccc------cce
Confidence 3466665544443 45889999999999999997554433333322 224567888887776653 357
Q ss_pred EEEEccCCeeEEEEeeecCccccCCCcceEEee-----ecCCCceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeee-
Q 014154 126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-----VCASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKI- 197 (430)
Q Consensus 126 ~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~-----~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~- 197 (430)
+++++.|+++.||.-.... .+..-+.|. ......|+.+.|.| -|-.|++++.||.|+||+....-.+
T Consensus 76 vA~cS~Drtv~iWEE~~~~-----~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs 150 (361)
T KOG2445|consen 76 VATCSYDRTVSIWEEQEKS-----EEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS 150 (361)
T ss_pred EEEEecCCceeeeeecccc-----cccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc
Confidence 8899999999999753111 111112222 13457899999999 5788999999999999987653222
Q ss_pred -----EeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCC-----CcEEEEECCCCC-c--ceEEEeecCCCeEE
Q 014154 198 -----WTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTND-----HQVRLYDTSAQR-R--PVMSFDFRETPIKA 263 (430)
Q Consensus 198 -----~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~d-----g~i~iwd~~~~~-~--~~~~~~~~~~~i~~ 263 (430)
.+++..... -..+.....|+.|.++. ...+|+.|+.+ +.+.||...... + .+..+.+|..+|+.
T Consensus 151 ~W~Lq~Ei~~~~~p--p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~d 228 (361)
T KOG2445|consen 151 QWTLQHEIQNVIDP--PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRD 228 (361)
T ss_pred cchhhhhhhhccCC--cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCccee
Confidence 122210000 00122456788885332 23467777665 478899876543 1 34567789999999
Q ss_pred EEecCCC----CEEEEEeCCCcEEEEEccCC--------------------eEEeeeeCCCCCCeEEEEecCCCCeEEEE
Q 014154 264 VAEEPDS----FNIYIGNGSGDLASVDIRTG--------------------KLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 264 ~~~sp~~----~~l~~~~~d~~i~iwd~~~~--------------------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~ 319 (430)
|+|.|+- ..|++++.|| |+||.+... +.+..+..| .+.|..+.|+-.|..|++.
T Consensus 229 i~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H-~~~VWrv~wNmtGtiLsSt 306 (361)
T KOG2445|consen 229 ISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH-NGEVWRVRWNMTGTILSST 306 (361)
T ss_pred eeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC-CCceEEEEEeeeeeEEeec
Confidence 9999963 6899999999 999998731 234456677 8999999999999999999
Q ss_pred eCCCcEEEEECC---CCceeeEEEeecc
Q 014154 320 GLDSYLRFWDIK---TRQLLSAVFLKQH 344 (430)
Q Consensus 320 ~~dg~i~iwd~~---~~~~~~~~~~~~~ 344 (430)
|.||.||+|... ..++...+...++
T Consensus 307 GdDG~VRLWkany~n~~kC~sv~~~e~~ 334 (361)
T KOG2445|consen 307 GDDGCVRLWKANYNNLWKCTSVLKAEGS 334 (361)
T ss_pred CCCceeeehhhhhhhhheeeeEEeccCC
Confidence 999999999764 2345555444444
No 141
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=4.2e-22 Score=188.80 Aligned_cols=215 Identities=13% Similarity=0.146 Sum_probs=169.2
Q ss_pred eeecCCCceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCe-ee--EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE
Q 014154 157 WNVCASGTIAFSKVDISEKFSLFGG--KGVEVNVWDLDKCE-KI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (430)
Q Consensus 157 ~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~-~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 231 (430)
|...+...|.++..+|++..+++|+ .|+.+++|+.+.-- .. .....+..-.....|...|+|+.| ++||.+||
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~--S~dG~~lA 85 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRF--SPDGSYLA 85 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEE--CCCCCeEe
Confidence 4444556799999999999999999 89999999975311 00 000001111112234588999999 99999999
Q ss_pred EEeCCCcEEEEECCC------C-----------CcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEe
Q 014154 232 AGTNDHQVRLYDTSA------Q-----------RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG 294 (430)
Q Consensus 232 s~~~dg~i~iwd~~~------~-----------~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 294 (430)
+|+.|+.|.||.... . .+.+..+.+|...|..++|+|++.+|++++.|++|.|||.++.+.+.
T Consensus 86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence 999999999999872 0 12467788999999999999999999999999999999999999999
Q ss_pred eeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeecc-----ccceEEeeeccccccc-ccc----C
Q 014154 295 CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH-----LNEVVFDSAFADKEVA-NAA----A 364 (430)
Q Consensus 295 ~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~g~~-~~~----~ 364 (430)
++.+| .+.|-.+.|.|-|+||++-+.|++|+||++.+....+.+. ++ .......+.|||||.+ ++. +
T Consensus 166 vl~~H-~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It--~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~ 242 (942)
T KOG0973|consen 166 VLRGH-QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSIT--KPFEESPLTTFFLRLSWSPDGHHLASPNAVNG 242 (942)
T ss_pred eeecc-cccccceEECCccCeeeeecCCceEEEEEcccceeeEeec--cchhhCCCcceeeecccCCCcCeecchhhccC
Confidence 99999 8999999999999999999999999999998877777642 22 2345789999999998 332 2
Q ss_pred CCCceEecCCCC
Q 014154 365 DAPMLEIQNGND 376 (430)
Q Consensus 365 ~d~~i~~~~~~~ 376 (430)
.-..+.|.+...
T Consensus 243 ~~~~~~IieR~t 254 (942)
T KOG0973|consen 243 GKSTIAIIERGT 254 (942)
T ss_pred CcceeEEEecCC
Confidence 334566665543
No 142
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=5.3e-21 Score=157.36 Aligned_cols=284 Identities=13% Similarity=0.066 Sum_probs=204.5
Q ss_pred eeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCe
Q 014154 55 LAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGK 134 (430)
Q Consensus 55 ~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 134 (430)
.++.| ++.|.+||+|..||.|.|||+.+...-+.+.+ |..++.++.|..... .+++++.|..
T Consensus 27 ~~~~F--s~~G~~lAvGc~nG~vvI~D~~T~~iar~lsa--------H~~pi~sl~WS~dgr--------~LltsS~D~s 88 (405)
T KOG1273|consen 27 ECCQF--SRWGDYLAVGCANGRVVIYDFDTFRIARMLSA--------HVRPITSLCWSRDGR--------KLLTSSRDWS 88 (405)
T ss_pred ceEEe--ccCcceeeeeccCCcEEEEEccccchhhhhhc--------cccceeEEEecCCCC--------EeeeecCCce
Confidence 34444 88899999999999999999998886666554 456888888766554 8999999999
Q ss_pred eEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCC
Q 014154 135 ASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP 213 (430)
Q Consensus 135 ~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 213 (430)
+.+|++..+. .++.. ....+|+...|+|.. +.+++.-.+..-.+-++..+.... +........ .
T Consensus 89 i~lwDl~~gs--------~l~ri--rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~-Lp~d~d~dl----n 153 (405)
T KOG1273|consen 89 IKLWDLLKGS--------PLKRI--RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV-LPKDDDGDL----N 153 (405)
T ss_pred eEEEeccCCC--------ceeEE--EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee-ccCCCcccc----c
Confidence 9999986443 33333 345899999999944 344444444445555555432211 111111100 0
Q ss_pred cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecC-CCeEEEEecCCCCEEEEEeCCCcEEEEEccCC--
Q 014154 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-- 290 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-- 290 (430)
....+..| .+.|+++++|...|.+.++|..+.+ .+..++... ..|.++.++..|++|++-+.|..||.|+++.-
T Consensus 154 ~sas~~~f--dr~g~yIitGtsKGkllv~~a~t~e-~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~ 230 (405)
T KOG1273|consen 154 SSASHGVF--DRRGKYIITGTSKGKLLVYDAETLE-CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDD 230 (405)
T ss_pred cccccccc--cCCCCEEEEecCcceEEEEecchhe-eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcc
Confidence 12233356 7899999999999999999999865 477766655 78999999999999999999999999998621
Q ss_pred -----eE--EeeeeCC-CCCCeEEEEecCCCCeEEEEe-CCCcEEEEECCCCceeeEEEeeccccceEEeeecccccccc
Q 014154 291 -----KL--LGCFIGK-CSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVAN 361 (430)
Q Consensus 291 -----~~--~~~~~~~-~~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~ 361 (430)
++ .+.++.- ....=.+++|+.+|.|++.++ .-..++||....|.++.. ++|..+....++.|+|-...+
T Consensus 231 ~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKI--LhG~kgE~l~DV~whp~rp~i 308 (405)
T KOG1273|consen 231 EGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKI--LHGTKGEELLDVNWHPVRPII 308 (405)
T ss_pred cCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeee--ecCCchhheeecccccceeee
Confidence 11 1222210 012335678999999987776 345799999999999998 777766778899999999986
Q ss_pred ccCCCCceEecCCCC
Q 014154 362 AAADAPMLEIQNGND 376 (430)
Q Consensus 362 ~~~~d~~i~~~~~~~ 376 (430)
..-..|.+++|....
T Consensus 309 ~si~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 309 ASIASGVVYIWAVVQ 323 (405)
T ss_pred eeccCCceEEEEeec
Confidence 666899999998654
No 143
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=4.3e-21 Score=158.47 Aligned_cols=293 Identities=13% Similarity=0.137 Sum_probs=183.5
Q ss_pred CCCCCceeEEeecCCeEEEecCCCCcccceeec------cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCe
Q 014154 61 DSQNDPLLAVARKNGLTDILNPLNGDLRVAISN------AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGK 134 (430)
Q Consensus 61 ~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 134 (430)
++|||.-|++-+.|..+.+|++.....-..-.. +... ..+....+....|++.-+.. ......+++.+.+.-
T Consensus 57 WSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~-r~~eg~tvydy~wYs~M~s~-qP~t~l~a~ssr~~P 134 (406)
T KOG2919|consen 57 WSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSY-RYQEGETVYDYCWYSRMKSD-QPSTNLFAVSSRDQP 134 (406)
T ss_pred eCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeE-EeccCCEEEEEEeeeccccC-CCccceeeeccccCc
Confidence 399999999999999999999853211111000 0000 00122334444444322110 011134444445555
Q ss_pred eEEEEeeecCccccCCCcceEEeeecC-CCceEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCeeeEeeCCCCCCCCCCcC
Q 014154 135 ASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGVEVNVWDL-DKCEKIWTAKPPPKNSLGIFT 212 (430)
Q Consensus 135 ~~v~~~~~~~~~~~~~~~~i~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~-~~~~~~~~~~~~~~~~~~~~~ 212 (430)
+.+|+.-.... .-..+.++... -....+++|+|+|.+|+.| ....|++||+ +.|+....+........+ .
T Consensus 135 Ih~wdaftG~l-----raSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~g--q 206 (406)
T KOG2919|consen 135 IHLWDAFTGKL-----RASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFG--Q 206 (406)
T ss_pred eeeeecccccc-----ccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccc--c
Confidence 55555322211 00111111100 1346789999999999855 5669999999 444332222111110111 1
Q ss_pred CcceeEEEEeecC-CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC-CCcEEEEEccCC
Q 014154 213 PTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTG 290 (430)
Q Consensus 213 ~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~ 290 (430)
.+-+.+++| +| +...++.|+....+-||.-.. ..|+..+-+|.+.|+.+.|.++|+.|++|+. |..|..||+|..
T Consensus 207 ~giisc~a~--sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 207 KGIISCFAF--SPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred cceeeeeec--cCCCCcceeeecccceeeeEecCC-CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 255788999 55 455899999999999998776 4578899999999999999999999999985 678999999964
Q ss_pred -eEEeeeeCCCCCCeEEE--EecCCCCeEEEEeCCCcEEEEECCC-CceeeEEEeeccccceEEeeeccccccccccCCC
Q 014154 291 -KLLGCFIGKCSGSIRSI--ARHPTLPIIASCGLDSYLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFADKEVANAAADA 366 (430)
Q Consensus 291 -~~~~~~~~~~~~~v~~i--~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d 366 (430)
.++..+..|-...-..| ...|++++|++|+.||.|++||+++ +..+.. +..+ +..++.++++|--.+++.+..
T Consensus 284 ~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv--~~~~-sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 284 RDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSV--TGNY-SDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred cchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccc--cccc-cccccceecCcccceeeeccC
Confidence 45777776622233344 4568999999999999999999998 665555 3334 455799999999666544444
Q ss_pred Cce
Q 014154 367 PML 369 (430)
Q Consensus 367 ~~i 369 (430)
..+
T Consensus 361 qr~ 363 (406)
T KOG2919|consen 361 QRI 363 (406)
T ss_pred cee
Confidence 443
No 144
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.7e-20 Score=167.00 Aligned_cols=284 Identities=18% Similarity=0.154 Sum_probs=214.7
Q ss_pred CCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccc-eeeccCCCCCCCCCCceEEEEEeecCcccccccCceE
Q 014154 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV-AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (430)
Q Consensus 48 ~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 126 (430)
.+..+.++|++. +.+.||.+-.+|.|.||++..+=... .+.+ +.+..|-++.|.+ . ++|
T Consensus 24 ~Ps~I~slA~s~----kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-------~~drsIE~L~W~e--~-------~RL 83 (691)
T KOG2048|consen 24 KPSEIVSLAYSH----KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-------PEDRSIESLAWAE--G-------GRL 83 (691)
T ss_pred eccceEEEEEec----cCCceeeeccCCcEEEEccCCCceeeEEEec-------CCCCceeeEEEcc--C-------CeE
Confidence 345655666655 33469999999999999998654332 2322 3446777777762 2 699
Q ss_pred EEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCC
Q 014154 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (430)
Q Consensus 127 ~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 206 (430)
++.+.+|.+.-|++.... ..+..+ ..++.|++++.+|.+..++.|+.||.+..++...+...+.......
T Consensus 84 FS~g~sg~i~EwDl~~lk--------~~~~~d-~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq- 153 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLK--------QKYNID-SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQ- 153 (691)
T ss_pred EeecCCceEEEEecccCc--------eeEEec-CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccc-
Confidence 999999999999987543 444454 4578999999999999999999999888888887776655433221
Q ss_pred CCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe----e----cCCCeEEEEecCCCCEEEEEeC
Q 014154 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD----F----RETPIKAVAEEPDSFNIYIGNG 278 (430)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~----~~~~i~~~~~sp~~~~l~~~~~ 278 (430)
.+.|.+++| +|++..|+.|+.||.|++||...+.. +.... . ...-|.++.|-.++ .|++|..
T Consensus 154 ------~sRvLslsw--~~~~~~i~~Gs~Dg~Iriwd~~~~~t-~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS 223 (691)
T KOG2048|consen 154 ------KSRVLSLSW--NPTGTKIAGGSIDGVIRIWDVKSGQT-LHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDS 223 (691)
T ss_pred ------cceEEEEEe--cCCccEEEecccCceEEEEEcCCCce-EEEeeecccccccCCceEEEEEEEeecC-cEEEecC
Confidence 278999999 89999999999999999999998764 33111 1 12246777776444 8999999
Q ss_pred CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceee--EEEeeccccceEEeeeccc
Q 014154 279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS--AVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 279 d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~s~ 356 (430)
.|+|.+||...+.++..+..| .+.|.+++..+++.+++++|.|+.|.-|...+..... .-....| ..-+.+++..+
T Consensus 224 ~G~V~FWd~~~gTLiqS~~~h-~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h-~hdvrs~av~~ 301 (691)
T KOG2048|consen 224 AGTVTFWDSIFGTLIQSHSCH-DADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLH-AHDVRSMAVIE 301 (691)
T ss_pred CceEEEEcccCcchhhhhhhh-hcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCC-cccceeeeeec
Confidence 999999999999999999998 8999999999999999999999999999887654321 1112334 44467888877
Q ss_pred cccccccCCCCceEecCC
Q 014154 357 KEVANAAADAPMLEIQNG 374 (430)
Q Consensus 357 ~g~~~~~~~d~~i~~~~~ 374 (430)
+ -+++|+.|..+.+=..
T Consensus 302 ~-~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 302 N-ALISGGRDFTLAICSS 318 (691)
T ss_pred c-eEEecceeeEEEEccc
Confidence 6 4488888888876543
No 145
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.6e-22 Score=191.11 Aligned_cols=256 Identities=16% Similarity=0.205 Sum_probs=193.9
Q ss_pred CCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC-CCEEEEEe
Q 014154 103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGG 181 (430)
Q Consensus 103 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~l~~~~ 181 (430)
...+..+.|-..... ..|.++.+.+||.+.+|+...- ........+...+ .|.+.|..+.|++. +++|++|+
T Consensus 64 ~~rF~kL~W~~~g~~----~~GlIaGG~edG~I~ly~p~~~--~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa 136 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSH----SHGLIAGGLEDGNIVLYDPASI--IANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGA 136 (1049)
T ss_pred cccceeeeecccCCC----ccceeeccccCCceEEecchhh--ccCcchHHHhhhc-ccCCceeeeeccccCCceeeccC
Confidence 346666776655441 1267899999999999997542 0111222333333 67899999999995 56999999
Q ss_pred CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCC--
Q 014154 182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET-- 259 (430)
Q Consensus 182 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-- 259 (430)
.||.|.|||+...+.-..... ....+.|.+++|. ......|++++.+|.+.|||++.. +++..+..+..
T Consensus 137 ~~geI~iWDlnn~~tP~~~~~-------~~~~~eI~~lsWN-rkvqhILAS~s~sg~~~iWDlr~~-~pii~ls~~~~~~ 207 (1049)
T KOG0307|consen 137 DDGEILIWDLNKPETPFTPGS-------QAPPSEIKCLSWN-RKVSHILASGSPSGRAVIWDLRKK-KPIIKLSDTPGRM 207 (1049)
T ss_pred CCCcEEEeccCCcCCCCCCCC-------CCCcccceEeccc-hhhhHHhhccCCCCCceeccccCC-CcccccccCCCcc
Confidence 999999999987554443321 1123779999994 334568899999999999999985 45666666543
Q ss_pred CeEEEEecCCC-CEEEEEeCC---CcEEEEEccCC-eEEeeeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEEEECCCC
Q 014154 260 PIKAVAEEPDS-FNIYIGNGS---GDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 260 ~i~~~~~sp~~-~~l~~~~~d---~~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~~~ 333 (430)
.+..++|+|+. ..|++++.| -.|.+||+|.. ..++++.+| ...|.++.|++.+ ++|++++.|+.|.+|+.+++
T Consensus 208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H-~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH-QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc-ccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence 47789999987 556666655 35999999864 467788888 8999999999966 89999999999999999999
Q ss_pred ceeeEEEeeccccceEEeeeccccccc--cccCCCCceEecCCCCCc
Q 014154 334 QLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~~~ 378 (430)
+.+..+ .. .+..++.+.|+|...- ++++-||.|.||......
T Consensus 287 Evl~~~--p~-~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 287 EVLGEL--PA-QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eEeeec--CC-CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999985 33 3667899999998773 788899999999886543
No 146
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.5e-21 Score=172.07 Aligned_cols=287 Identities=17% Similarity=0.206 Sum_probs=193.0
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec-
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN- 93 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~- 93 (430)
..|++|+.||+||||.+.++ .++.++. ....|.+++++. .++-..||++-... +.|.+..-|..+.....
T Consensus 413 ~wlasGsdDGtvriWEi~Tg-----Rcvr~~~-~d~~I~~vaw~P--~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ 483 (733)
T KOG0650|consen 413 EWLASGSDDGTVRIWEIATG-----RCVRTVQ-FDSEIRSVAWNP--LSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTK 483 (733)
T ss_pred ceeeecCCCCcEEEEEeecc-----eEEEEEe-ecceeEEEEecC--CCCceeEEEEecCc-eEEeCccccchhhhcchh
Confidence 57899999999999999998 7776665 344666666666 66666777765544 77777655533322111
Q ss_pred --cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc----cc---cCCCcceEEeeec----
Q 014154 94 --AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV----SA---ESSCSTVKSWNVC---- 160 (430)
Q Consensus 94 --~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~----~~---~~~~~~i~~~~~~---- 160 (430)
+.... ....+..++..|.....+... .+..++.... -.|..+.+... ++ .+....|.++.+.
T Consensus 484 ell~~~~--~~~~p~~~~~~W~~~~~~e~~-~~v~~~I~~~--k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s 558 (733)
T KOG0650|consen 484 ELLASAP--NESEPDAAVVTWSRASLDELE-KGVCIVIKHP--KSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS 558 (733)
T ss_pred hhhhcCC--CccCCcccceeechhhhhhhc-cceEEEEecC--CccceeeeecCCceEEEeccCCCcceEEEEecccccc
Confidence 00000 001122233334332111000 0111111111 11222222221 00 0111223333322
Q ss_pred ------CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe
Q 014154 161 ------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT 234 (430)
Q Consensus 161 ------~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 234 (430)
..+.|.++.|+|...+|++++.. .|++||+...+.+..+.... .+|..++. +|.|..|+.++
T Consensus 559 Q~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~---------kwiS~msi--hp~GDnli~gs 626 (733)
T KOG0650|consen 559 QSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGS---------KWISSMSI--HPNGDNLILGS 626 (733)
T ss_pred cCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCC---------eeeeeeee--cCCCCeEEEec
Confidence 24679999999999999988876 89999998877666655433 78999999 89999999999
Q ss_pred CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEcc------CC---eEEeeeeCCCCC---
Q 014154 235 NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR------TG---KLLGCFIGKCSG--- 302 (430)
Q Consensus 235 ~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~------~~---~~~~~~~~~~~~--- 302 (430)
.|+.+..||+.-..++.+++..|...+++++|++.-.++++|+.||++.||--. .. -++..+.+| ..
T Consensus 627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH-~~~~~ 705 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH-EKTND 705 (733)
T ss_pred CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc-eeecc
Confidence 999999999998888899999999999999999999999999999999988432 22 246677787 44
Q ss_pred -CeEEEEecCCCCeEEEEeCCCcEEEE
Q 014154 303 -SIRSIARHPTLPIIASCGLDSYLRFW 328 (430)
Q Consensus 303 -~v~~i~~~~~~~~l~s~~~dg~i~iw 328 (430)
.|..+.|||...+|++++.||+|++|
T Consensus 706 ~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 706 LGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cceEeecccCCCceEEecCCCceEEee
Confidence 48889999999999999999999998
No 147
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.8e-21 Score=169.23 Aligned_cols=272 Identities=14% Similarity=0.162 Sum_probs=199.0
Q ss_pred eEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC--eeEEEEeeecCc
Q 014154 68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG--KASMRSIEVTKV 145 (430)
Q Consensus 68 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~v~~~~~~~~ 145 (430)
|..++....++|||+........+..+.+. ..+.++.|-.. ..+++++..| .+.+|.-...
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~------pg~~s~~w~~~---------n~lvvas~~gdk~~~~~~K~g~-- 67 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAE------PGDFSFNWQRR---------NFLVVASMAGDKVMRIKEKDGK-- 67 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCC------Ccceeeecccc---------ceEEEeecCCceeEEEecccCC--
Confidence 334445567999999766554444433221 13444444332 2455555444 4555543211
Q ss_pred cccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
.+.|-+.....+..-.|++......++++|+..+.|+|||++...+.+.++.|+ +.|+++.| +.
T Consensus 68 -----~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~---------stvt~v~Y--N~ 131 (673)
T KOG4378|consen 68 -----TPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQ---------STVTYVDY--NN 131 (673)
T ss_pred -----CCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCc---------ceeEEEEe--cC
Confidence 123444444445555666666667899999999999999999776777777776 78999999 67
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCcceEEEeec-CCCeEEEEecCCCCE-EEEEeCCCcEEEEEccCCeEEeeeeCCCCCC
Q 014154 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFN-IYIGNGSGDLASVDIRTGKLLGCFIGKCSGS 303 (430)
Q Consensus 226 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~sp~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 303 (430)
...+|++++..|.|.|..+.++.+ ...|... ...|.-+.|+|..++ |.+++.+|.|.+||+....++..+...|.++
T Consensus 132 ~DeyiAsvs~gGdiiih~~~t~~~-tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP 210 (673)
T KOG4378|consen 132 TDEYIASVSDGGDIIIHGTKTKQK-TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAP 210 (673)
T ss_pred CcceeEEeccCCcEEEEecccCcc-ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCC
Confidence 788999999999999999998654 4445443 456778999998755 5577889999999998877777766555999
Q ss_pred eEEEEecCCC-CeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154 304 IRSIARHPTL-PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 304 v~~i~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~ 377 (430)
...|+|+|.. .+|++.|.|..|++||+...+....+.. ......++|+++|.+ ++|...|.|..||....
T Consensus 211 ~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y----~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY----SHPLSTVAFSECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred cCcceecCCccceEEEecccceEEEeecccccccceeee----cCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence 9999999965 5788999999999999998887777543 334688999999999 88999999999998654
No 148
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=5e-23 Score=186.52 Aligned_cols=200 Identities=20% Similarity=0.261 Sum_probs=180.1
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcE
Q 014154 160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (430)
Q Consensus 160 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 239 (430)
.|...+.++..-..++.+++|+.|..+-+|.+.....+..+.+|. ..|.++.| ++...+|+.|+.+|+|
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~he---------spIeSl~f--~~~E~Llaagsasgti 94 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHE---------SPIESLTF--DTSERLLAAGSASGTI 94 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccC---------Ccceeeec--CcchhhhcccccCCce
Confidence 345667777776678999999999999999998777777777765 78999999 7888999999999999
Q ss_pred EEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEE
Q 014154 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~ 319 (430)
++||+...+ .++++.+|...+.++.|+|-+.+.+.|+.|+.+++||.+..-+.+.+.+| ...|..+.|+|+|++++++
T Consensus 95 K~wDleeAk-~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~-~~vv~~l~lsP~Gr~v~~g 172 (825)
T KOG0267|consen 95 KVWDLEEAK-IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSH-TRVVDVLRLSPDGRWVASG 172 (825)
T ss_pred eeeehhhhh-hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCC-cceeEEEeecCCCceeecc
Confidence 999999865 58899999999999999999999999999999999999988999999997 8899999999999999999
Q ss_pred eCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCC
Q 014154 320 GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 320 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~ 375 (430)
++|..++|||...|+.+.. +.+| ...+..+.|+|..-+ +.|+.|+++++|+..
T Consensus 173 ~ed~tvki~d~~agk~~~e--f~~~-e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 173 GEDNTVKIWDLTAGKLSKE--FKSH-EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred CCcceeeeecccccccccc--cccc-cccccccccCchhhhhccCCCCceeeeeccc
Confidence 9999999999999999988 5667 455688999999988 999999999999987
No 149
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.3e-20 Score=161.97 Aligned_cols=256 Identities=12% Similarity=0.150 Sum_probs=185.2
Q ss_pred EEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccc-----cCCCcce------EEe-eecCCCceEEEEEcC-CC
Q 014154 108 GLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA-----ESSCSTV------KSW-NVCASGTIAFSKVDI-SE 174 (430)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~-----~~~~~~i------~~~-~~~~~~~i~~~~~~~-~~ 174 (430)
++.|.+. ....+..+++++.|+.+-.+.||++.....+. ++..... +-. ...|...|..++|+- ..
T Consensus 178 C~ewld~-~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 178 CIEWLDH-GSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhc-CCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 4555554 22223455689999999999999987654311 1000000 000 112445566777765 35
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE
Q 014154 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 254 (430)
+.||+|+.|.+|.+||+.++++...+..+. ..|.++.|+ +....+|++|+.|++|.+.|.+.....-..+
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~---------k~Vq~l~wh-~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w 326 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHG---------KKVQTLEWH-PYEPSVLLSGSYDGTVALKDCRDPSNSGKEW 326 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcC---------CceeEEEec-CCCceEEEeccccceEEeeeccCccccCceE
Confidence 789999999999999999999988887654 779999996 4567899999999999999999644333333
Q ss_pred eecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCC-eEEeeeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEEEECC
Q 014154 255 DFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 255 ~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~ 331 (430)
+. .+.|-.++|.|.. ..++++..||+|+-+|+|+. +++.+++.| ..+|.++++++.- .+|++++.|+.|++|++.
T Consensus 327 k~-~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AH-d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~ 404 (463)
T KOG0270|consen 327 KF-DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAH-DDEISGLSVNIQTPGLLSTASTDKVVKLWKFD 404 (463)
T ss_pred Ee-ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEec-cCCcceEEecCCCCcceeeccccceEEEEeec
Confidence 32 3689999998865 56778889999999999975 899999999 8999999998865 478999999999999987
Q ss_pred CCceeeEEEeeccccceEEeeeccccccc--cccCCCCceEecCCCCC
Q 014154 332 TRQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 332 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~~ 377 (430)
.-.........-. -+...|.++.|+-.+ ++|+..+.++||+....
T Consensus 405 ~~~~~~v~~~~~~-~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 405 VDSPKSVKEHSFK-LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred CCCCccccccccc-ccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 5443222101001 122567788887655 88888889999998763
No 150
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=7.6e-21 Score=163.30 Aligned_cols=245 Identities=16% Similarity=0.165 Sum_probs=176.4
Q ss_pred CCceeEEeecCCeEEEecCCCCcc---cceeec----------cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEc
Q 014154 64 NDPLLAVARKNGLTDILNPLNGDL---RVAISN----------AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (430)
Q Consensus 64 ~g~~l~~g~~dg~i~iwd~~~~~~---~~~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 130 (430)
-|+|+|.|+.|..|.|||+.--.. ...+.. -.....+.|.+.+..+.+..... +.|++++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~-------nVLaSgs 263 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR-------NVLASGS 263 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc-------eeEEecC
Confidence 367999999999999999852111 111110 11122234555555444433333 6899999
Q ss_pred cCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCC---eeeEeeCCCCCC
Q 014154 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKC---EKIWTAKPPPKN 206 (430)
Q Consensus 131 ~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~ 206 (430)
.|.++.+|++..... ..... .|++.|.++.|+| ...+|++|+.|++|.++|.+.. ...+.+.
T Consensus 264 aD~TV~lWD~~~g~p--------~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~----- 329 (463)
T KOG0270|consen 264 ADKTVKLWDVDTGKP--------KSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD----- 329 (463)
T ss_pred CCceEEEEEcCCCCc--------ceehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec-----
Confidence 999999999986653 22332 5789999999999 5678999999999999999842 2223322
Q ss_pred CCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEE
Q 014154 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASV 285 (430)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iw 285 (430)
+.|-.++|. ......+++++.||+|+-+|+|....++.+++.|.++|.+|++++.- .++++++.|+.|++|
T Consensus 330 -------g~VEkv~w~-~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw 401 (463)
T KOG0270|consen 330 -------GEVEKVAWD-PHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLW 401 (463)
T ss_pred -------cceEEEEec-CCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEE
Confidence 458888994 23455788889999999999999888999999999999999998754 578899999999999
Q ss_pred EccCCeE--EeeeeCCCCCCeEEEEecCCCC-eEEEEeCCCcEEEEECCCCceeeE
Q 014154 286 DIRTGKL--LGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 286 d~~~~~~--~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~ 338 (430)
++..... +..-.-. -+...|+++.|+-. +|+.|+..+.++|||+.+...+..
T Consensus 402 ~~~~~~~~~v~~~~~~-~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 402 KFDVDSPKSVKEHSFK-LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred eecCCCCccccccccc-ccceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence 9875443 2111111 23467778888764 577888888899999988776554
No 151
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.7e-20 Score=152.46 Aligned_cols=274 Identities=14% Similarity=0.146 Sum_probs=197.3
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..|+.|..||.|.|||+.+- .....+.+|-.+++ +++| +++|+.|++++.|..|.+||+..|.++..+.--
T Consensus 36 ~~lAvGc~nG~vvI~D~~T~-----~iar~lsaH~~pi~--sl~W--S~dgr~LltsS~D~si~lwDl~~gs~l~rirf~ 106 (405)
T KOG1273|consen 36 DYLAVGCANGRVVIYDFDTF-----RIARMLSAHVRPIT--SLCW--SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD 106 (405)
T ss_pred ceeeeeccCCcEEEEEcccc-----chhhhhhcccccee--EEEe--cCCCCEeeeecCCceeEEEeccCCCceeEEEcc
Confidence 56889999999999999985 45566889999955 5556 778889999999999999999999988877641
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc--cccCCCcceEEeeecCCCceEEEEEcC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV--SAESSCSTVKSWNVCASGTIAFSKVDI 172 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~--~~~~~~~~i~~~~~~~~~~i~~~~~~~ 172 (430)
.++....+.+... +.++++-.+-.-.+..+..... .....++... ....+..|++
T Consensus 107 ---------spv~~~q~hp~k~-------n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln-------~sas~~~fdr 163 (405)
T KOG1273|consen 107 ---------SPVWGAQWHPRKR-------NKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLN-------SSASHGVFDR 163 (405)
T ss_pred ---------CccceeeeccccC-------CeEEEEEecCCcEEEEecCCceeeccCCCccccc-------cccccccccC
Confidence 3555555555444 4555544444333333321100 1111111111 1122336888
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc---
Q 014154 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR--- 249 (430)
Q Consensus 173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--- 249 (430)
.|+++++|...|.+.+||.++.+++..++... ...|..+.| +..|++|+.-+.|..|+.|+++.-..
T Consensus 164 ~g~yIitGtsKGkllv~~a~t~e~vas~rits--------~~~IK~I~~--s~~g~~liiNtsDRvIR~ye~~di~~~~r 233 (405)
T KOG1273|consen 164 RGKYIITGTSKGKLLVYDAETLECVASFRITS--------VQAIKQIIV--SRKGRFLIINTSDRVIRTYEISDIDDEGR 233 (405)
T ss_pred CCCEEEEecCcceEEEEecchheeeeeeeech--------heeeeEEEE--eccCcEEEEecCCceEEEEehhhhcccCc
Confidence 99999999999999999999988877665432 145788888 78999999999999999999873110
Q ss_pred -----ceEEEee--cCCCeEEEEecCCCCEEEEEeC-CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeC
Q 014154 250 -----PVMSFDF--RETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL 321 (430)
Q Consensus 250 -----~~~~~~~--~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~ 321 (430)
+.+.++. ....-.+++|+.+|.|+++++. ...++||....|.+++.+.|........+.|+|-...+++- .
T Consensus 234 ~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~ 312 (405)
T KOG1273|consen 234 DGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-A 312 (405)
T ss_pred cCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-c
Confidence 0011110 1123467889999999988774 36799999999999999998733678889999999888887 7
Q ss_pred CCcEEEEECC
Q 014154 322 DSYLRFWDIK 331 (430)
Q Consensus 322 dg~i~iwd~~ 331 (430)
.|.|+||...
T Consensus 313 sg~v~iw~~~ 322 (405)
T KOG1273|consen 313 SGVVYIWAVV 322 (405)
T ss_pred CCceEEEEee
Confidence 7899999864
No 152
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=1.2e-20 Score=162.75 Aligned_cols=292 Identities=12% Similarity=0.106 Sum_probs=207.5
Q ss_pred CCCCcceeeeeecCCCC--CceeEEeecCCeEEEecCCCCc-ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCc
Q 014154 48 PHSSNCVLAASIDDSQN--DPLLAVARKNGLTDILNPLNGD-LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR 124 (430)
Q Consensus 48 ~~~~~~~~~~~~~~~p~--g~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 124 (430)
+.+.+. ++.| +|. -+++|+|+.-|.|-+||+.+.+ ....+.. |.+|..++.++.+.+.+. .
T Consensus 185 ~~~Rit--~l~f--HPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~-----f~~hs~~Vs~l~F~P~n~-------s 248 (498)
T KOG4328|consen 185 TDRRIT--SLAF--HPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYL-----FTPHSGPVSGLKFSPANT-------S 248 (498)
T ss_pred cccceE--EEEe--cccCcceEEEEccCCCcEEEEecCCCCCccCceEE-----eccCCccccceEecCCCh-------h
Confidence 455544 4444 444 3589999999999999995222 2222221 556778999999998877 7
Q ss_pred eEEEEccCCeeEEEEeeecCccccCCCcceEEeee-cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-eEeeCC
Q 014154 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK-IWTAKP 202 (430)
Q Consensus 125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~ 202 (430)
.+++.+.||+++.-++...-. .. ++.. .....+..+.|+.+...++++..=|...+||++++.. ...+..
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~------e~--v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l 320 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNIS------EE--VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL 320 (498)
T ss_pred heeeeccCceeeeeeecchhh------HH--HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh
Confidence 999999999999998764321 01 1111 1224456678888888888888888999999987654 444444
Q ss_pred CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC--c-ceEEEeecCCCeEEEEecCCCCEEEEEeCC
Q 014154 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--R-PVMSFDFRETPIKAVAEEPDSFNIYIGNGS 279 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 279 (430)
|. ..|.++++. +-...+|++++.|++++|||++... . |+.....|...|.++.|||.+..|++.+.|
T Consensus 321 h~---------kKI~sv~~N-P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D 390 (498)
T KOG4328|consen 321 HK---------KKITSVALN-PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQD 390 (498)
T ss_pred hh---------cccceeecC-CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccC
Confidence 43 468999994 2245689999999999999998632 2 345555688999999999999889999999
Q ss_pred CcEEEEEcc----CCeEEeeeeCCC--CC--CeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeecccc-ceEE
Q 014154 280 GDLASVDIR----TGKLLGCFIGKC--SG--SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLN-EVVF 350 (430)
Q Consensus 280 ~~i~iwd~~----~~~~~~~~~~~~--~~--~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~v~ 350 (430)
+.|+|||.. ...+..++...+ .. ......|.|+..++++|-.-..|-|||-..++++..+ ..... .+..
T Consensus 391 ~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el--~~P~~~tI~~ 468 (498)
T KOG4328|consen 391 NEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCEL--HDPESSTIPS 468 (498)
T ss_pred CceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeec--cCcccccccc
Confidence 999999983 333333333210 11 2345679999999999998889999999999988774 33322 3334
Q ss_pred eeecccccc-c-cccCCCCceEecCCC
Q 014154 351 DSAFADKEV-A-NAAADAPMLEIQNGN 375 (430)
Q Consensus 351 ~~~~s~~g~-~-~~~~~d~~i~~~~~~ 375 (430)
-..|+|-+. + +.++..|.|+||...
T Consensus 469 vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 469 VNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ceeecccccceeccCCccceEEEEecC
Confidence 468999877 4 445577888888654
No 153
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.1e-21 Score=158.26 Aligned_cols=210 Identities=15% Similarity=0.147 Sum_probs=158.2
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEE-EEEeCCCc
Q 014154 160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQ 238 (430)
Q Consensus 160 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~ 238 (430)
.|++.|++++|+.+|++|++++.|+.|++|+++.... +.|.-....+ ..+..+.++| .||..-+ +++-...+
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~----~eHr~~R~nv-e~dhpT~V~F--apDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN----KEHRCIRQNV-EYDHPTRVVF--APDCKSVVVSVKRGNK 156 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh----hhhhHhhccc-cCCCceEEEE--CCCcceEEEEEccCCE
Confidence 5789999999999999999999999999999976221 1111000000 0134678899 7777654 44555668
Q ss_pred EEEEECCCCC---cceE--------EEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEE
Q 014154 239 VRLYDTSAQR---RPVM--------SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI 307 (430)
Q Consensus 239 i~iwd~~~~~---~~~~--------~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i 307 (430)
+++|.+...+ -+.. .-..|...+..+-...++.+|++++.|..|.+|+++ |+.+..+... ...-+..
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn-q~~n~~a 234 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN-QSSNYDA 234 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc-cccccce
Confidence 9999875321 1111 112355667777777888999999999999999998 9999888876 6667788
Q ss_pred EecCCCCeEEEEeCCCcEEEEECC---CC---ceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCCcc
Q 014154 308 ARHPTLPIIASCGLDSYLRFWDIK---TR---QLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQE 379 (430)
Q Consensus 308 ~~~~~~~~l~s~~~dg~i~iwd~~---~~---~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~~ 379 (430)
+.||+|++|++++.---|++|.+- .| +....+.++|| ...|..++|+++... ++++.||.+++||.+...+
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH-~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~ 312 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH-QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE 312 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc-hhheeeeeeCCCcceeEEEecCCcEEEeeccceEe
Confidence 999999999999998889999863 22 23445568999 555799999999988 9999999999999987554
No 154
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=7.8e-21 Score=159.96 Aligned_cols=234 Identities=15% Similarity=0.193 Sum_probs=170.4
Q ss_pred eEEEEccCCeeEEEEeeecCc--------cccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe
Q 014154 125 TLLTCTTKGKASMRSIEVTKV--------SAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCE 195 (430)
Q Consensus 125 ~~~~~~~~g~~~v~~~~~~~~--------~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~ 195 (430)
.+++-+..|.+.||++...-. ..-+...++..+. .|++.=..++|+| ....|++|.--+.|++|...++.
T Consensus 167 ~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~-ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~ 245 (440)
T KOG0302|consen 167 LCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFN-GHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS 245 (440)
T ss_pred eeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEec-ccCccceeeecccccccccccCccccceEeeeeccCc
Confidence 566778889999999864322 1223445555555 5667788999999 33457788888899999988754
Q ss_pred eeEeeCCCCCCCCCCcCCcceeEEEEeecCC-CCEEEEEeCCCcEEEEECCCC-CcceEEEeecCCCeEEEEecCCCCEE
Q 014154 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQ-RRPVMSFDFRETPIKAVAEEPDSFNI 273 (430)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~sp~~~~l 273 (430)
-...-.. .+.|...|..++| +|. ...|++|+.||+|+|||++.+ +.+....+.|.+.|+.|.|+....+|
T Consensus 246 W~vd~~P------f~gH~~SVEDLqW--SptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lL 317 (440)
T KOG0302|consen 246 WKVDQRP------FTGHTKSVEDLQW--SPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLL 317 (440)
T ss_pred eeecCcc------ccccccchhhhcc--CCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCccee
Confidence 3211111 1225578999999 554 458999999999999999986 33445558899999999999988899
Q ss_pred EEEeCCCcEEEEEccC---CeEEeeeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEEEECCCCce--------------
Q 014154 274 YIGNGSGDLASVDIRT---GKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQL-------------- 335 (430)
Q Consensus 274 ~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~~~~~-------------- 335 (430)
++|+.||+++|||+|+ ++++..|+-| ..+|++|.|+|.. ..|+++|.|.+|.|||+.-..-
T Consensus 318 asG~DdGt~~iwDLR~~~~~~pVA~fk~H-k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~d 396 (440)
T KOG0302|consen 318 ASGGDDGTLSIWDLRQFKSGQPVATFKYH-KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQD 396 (440)
T ss_pred eecCCCceEEEEEhhhccCCCcceeEEec-cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhc
Confidence 9999999999999985 5678899988 9999999999954 5788888999999999853211
Q ss_pred --eeEEEeeccccceEEeeeccccc--cccccCCCCce
Q 014154 336 --LSAVFLKQHLNEVVFDSAFADKE--VANAAADAPML 369 (430)
Q Consensus 336 --~~~~~~~~~~~~~v~~~~~s~~g--~~~~~~~d~~i 369 (430)
.+.++.+.. ...+-.+.|+++- .+++.+.||.-
T Consensus 397 lPpQLLFVHqG-Qke~KevhWH~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 397 LPPQLLFVHQG-QKEVKEVHWHRQIPGLLVSTAIDGFN 433 (440)
T ss_pred CCceeEEEecc-hhHhhhheeccCCCCeEEEeccccee
Confidence 111112211 2335788999864 44777777754
No 155
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1e-19 Score=149.39 Aligned_cols=236 Identities=16% Similarity=0.219 Sum_probs=173.2
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC--CCCEEEEEeCCCeEEEEECCCC-------
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKC------- 194 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~------- 194 (430)
.++++|+.|+++.||+...... .-..---|. .|.+.|..+.|.+ -|+.+|+++.|+++.||.-...
T Consensus 26 RRmAtCSsDq~vkI~d~~~~s~----~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~ 100 (361)
T KOG2445|consen 26 RRMATCSSDQTVKIWDSTSDSG----TWSCTSSWR-AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGR 100 (361)
T ss_pred ceeeeccCCCcEEEEeccCCCC----ceEEeeeEE-ecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccc
Confidence 6999999999999999632211 111223465 5788899999965 5899999999999999975211
Q ss_pred --eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc-----ceEEEe-------ecCCC
Q 014154 195 --EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-----PVMSFD-------FRETP 260 (430)
Q Consensus 195 --~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~-------~~~~~ 260 (430)
....++... ...|+.+.|.|..-|-.|++++.||.|+||+...... ....+. .+..+
T Consensus 101 ~Wv~~ttl~Ds---------rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~ 171 (361)
T KOG2445|consen 101 RWVRRTTLVDS---------RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQP 171 (361)
T ss_pred eeEEEEEeecC---------CcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCc
Confidence 011222222 2679999997666788999999999999999765321 111222 34567
Q ss_pred eEEEEecCC---CCEEEEEeCC-----CcEEEEEccCC----eEEeeeeCCCCCCeEEEEecCCC----CeEEEEeCCCc
Q 014154 261 IKAVAEEPD---SFNIYIGNGS-----GDLASVDIRTG----KLLGCFIGKCSGSIRSIARHPTL----PIIASCGLDSY 324 (430)
Q Consensus 261 i~~~~~sp~---~~~l~~~~~d-----~~i~iwd~~~~----~~~~~~~~~~~~~v~~i~~~~~~----~~l~s~~~dg~ 324 (430)
..|+.|+|. ..+|++|+.+ +.+.||....+ ..+.++.+| ..+|+.|+|.|+- .+||+++.||
T Consensus 172 ~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~-~dpI~di~wAPn~Gr~y~~lAvA~kDg- 249 (361)
T KOG2445|consen 172 CFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH-TDPIRDISWAPNIGRSYHLLAVATKDG- 249 (361)
T ss_pred ceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC-CCcceeeeeccccCCceeeEEEeecCc-
Confidence 889999975 3688888766 57888876533 346677887 9999999999964 5799999999
Q ss_pred EEEEECCCCc-----------------eeeEEE-eeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 325 LRFWDIKTRQ-----------------LLSAVF-LKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 325 i~iwd~~~~~-----------------~~~~~~-~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
|+||+++... .+..+. +.+| .+.|+.+.|+-.|.. .+.++||.|++|..+-
T Consensus 250 v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H-~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 250 VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH-NGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC-CCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 9999987311 122222 4566 666899999999999 8899999999998765
No 156
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=3.2e-20 Score=160.03 Aligned_cols=284 Identities=14% Similarity=0.101 Sum_probs=195.7
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..+++|+.-|.|-+||+.... ....-+..+..|..+|..+.|++.+. ..+++.+.||+|++-|++.+.....+..-
T Consensus 201 ~lva~GdK~G~VG~Wn~~~~~-~d~d~v~~f~~hs~~Vs~l~F~P~n~---s~i~ssSyDGtiR~~D~~~~i~e~v~s~~ 276 (498)
T KOG4328|consen 201 KLVAVGDKGGQVGLWNFGTQE-KDKDGVYLFTPHSGPVSGLKFSPANT---SQIYSSSYDGTIRLQDFEGNISEEVLSLD 276 (498)
T ss_pred eEEEEccCCCcEEEEecCCCC-CccCceEEeccCCccccceEecCCCh---hheeeeccCceeeeeeecchhhHHHhhcC
Confidence 678899999999999996421 12223445778999999999987433 56899999999999999766533222210
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-C
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-S 173 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~ 173 (430)
-....+..+.+.... ..++.+..-|...+|++..... ....|.+ |...|..++++| .
T Consensus 277 ------~d~~~fs~~d~~~e~--------~~vl~~~~~G~f~~iD~R~~~s-------~~~~~~l-h~kKI~sv~~NP~~ 334 (498)
T KOG4328|consen 277 ------TDNIWFSSLDFSAES--------RSVLFGDNVGNFNVIDLRTDGS-------EYENLRL-HKKKITSVALNPVC 334 (498)
T ss_pred ------ccceeeeeccccCCC--------ccEEEeecccceEEEEeecCCc-------cchhhhh-hhcccceeecCCCC
Confidence 000122222222222 4677777777888998875432 3444443 456999999999 5
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECC---CCCcc
Q 014154 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS---AQRRP 250 (430)
Q Consensus 174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~ 250 (430)
..+|++++.|++++|||++......+ .....+.|...|.++.| +|.+..|++.+.|..|+|||.. ....+
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~s-----p~lst~~HrrsV~sAyF--SPs~gtl~TT~~D~~IRv~dss~~sa~~~p 407 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKAS-----PFLSTLPHRRSVNSAYF--SPSGGTLLTTCQDNEIRVFDSSCISAKDEP 407 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCC-----cceecccccceeeeeEE--cCCCCceEeeccCCceEEeecccccccCCc
Confidence 67889999999999999975332221 01112334577999999 7888789999999999999984 22334
Q ss_pred eEEEeecC-----CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEE-EEecCCCCeEEEE-eCCC
Q 014154 251 VMSFDFRE-----TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS-IARHPTLPIIASC-GLDS 323 (430)
Q Consensus 251 ~~~~~~~~-----~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~-i~~~~~~~~l~s~-~~dg 323 (430)
...+.... -......|.|+..+|++|-.-..|-|||-..++.+..+.......|.+ ..|+|-+..+++| +..|
T Consensus 408 ~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~G 487 (498)
T KOG4328|consen 408 LGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSG 487 (498)
T ss_pred cceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccc
Confidence 44443211 123456799999999999999999999999999888876542335555 4799988745555 5678
Q ss_pred cEEEEECC
Q 014154 324 YLRFWDIK 331 (430)
Q Consensus 324 ~i~iwd~~ 331 (430)
.|+||--+
T Consensus 488 ki~vft~k 495 (498)
T KOG4328|consen 488 KIYVFTNK 495 (498)
T ss_pred eEEEEecC
Confidence 88888654
No 157
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=1.3e-20 Score=158.71 Aligned_cols=210 Identities=17% Similarity=0.234 Sum_probs=158.3
Q ss_pred EEeeecCCCceEEEEEcC--CCCEEEEEeCCCeEEEEECCC----------------CeeeEeeCCCCCCCCCCcCCcce
Q 014154 155 KSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDK----------------CEKIWTAKPPPKNSLGIFTPTWF 216 (430)
Q Consensus 155 ~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~----------------~~~~~~~~~~~~~~~~~~~~~~v 216 (430)
..-.+.|.+.+..+...+ +..+.++-+..|.|.||++.. .++++++..|. ..=
T Consensus 144 ~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk---------~EG 214 (440)
T KOG0302|consen 144 EMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK---------GEG 214 (440)
T ss_pred cccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC---------ccc
Confidence 333445566666666665 445666778899999999853 13344444444 334
Q ss_pred eEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc--eEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCC---
Q 014154 217 TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP--VMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG--- 290 (430)
Q Consensus 217 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~--- 290 (430)
..++|++. ....|++|..-+.|++|...++.-. ...+.+|+..|-.++|||.. ..|++++.||+|+|||+|.+
T Consensus 215 y~LdWSp~-~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~ 293 (440)
T KOG0302|consen 215 YGLDWSPI-KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK 293 (440)
T ss_pred eeeecccc-cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc
Confidence 67888422 2335888888899999998875421 23456799999999999975 68889999999999999988
Q ss_pred eEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC---CceeeEEEeeccccceEEeeeccccccc--cccCC
Q 014154 291 KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT---RQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAAD 365 (430)
Q Consensus 291 ~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~ 365 (430)
.++.+ +.| .+.|+-|.|+....+|++|+.||+++|||++. ++++.. ++.| ...|+++.|+|.... ++++.
T Consensus 294 ~~~~~-kAh-~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~--fk~H-k~pItsieW~p~e~s~iaasg~ 368 (440)
T KOG0302|consen 294 AAVST-KAH-NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT--FKYH-KAPITSIEWHPHEDSVIAASGE 368 (440)
T ss_pred ceeEe-ecc-CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCccee--EEec-cCCeeEEEeccccCceEEeccC
Confidence 33433 666 88999999999988999999999999999975 566777 4556 566899999997654 88999
Q ss_pred CCceEecCCCCCcc
Q 014154 366 APMLEIQNGNDTQE 379 (430)
Q Consensus 366 d~~i~~~~~~~~~~ 379 (430)
|..|.+||......
T Consensus 369 D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 369 DNQITIWDLSVEAD 382 (440)
T ss_pred CCcEEEEEeeccCC
Confidence 99999999976543
No 158
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.9e-19 Score=169.92 Aligned_cols=291 Identities=18% Similarity=0.228 Sum_probs=208.5
Q ss_pred CCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~ 141 (430)
+|-.+.+++++..-.|+|||.+.++.+..|.... +-...+..+.+.+.... ..+++++.||.++||.--
T Consensus 1073 hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~-----~~~t~Vs~l~liNe~D~------aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1073 HPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA-----FPDTRVSDLELINEQDD------ALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCceeEEcCCcceEEEEecccCceeccccCCC-----CCCCccceeeeecccch------hheeeeccCceEEEeccc
Confidence 5666779999888899999999999877776532 23457888888887653 489999999999999843
Q ss_pred ecCccccCCCcceEEeeecC------CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcc
Q 014154 142 VTKVSAESSCSTVKSWNVCA------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW 215 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~------~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (430)
.... ..-..|.-|..-. .+.=.-+.|.....+|++++.-..|+|||...-..+..+.... ..-
T Consensus 1142 ~~~~---~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s--------~t~ 1210 (1387)
T KOG1517|consen 1142 ADKW---KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGS--------STL 1210 (1387)
T ss_pred cccc---CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCC--------Ccc
Confidence 3210 1112333343211 1111345677766677777778899999998776666554432 134
Q ss_pred eeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC--cceEEEeecCCC--eEEEEecCCCC-EEEEEeCCCcEEEEEccCC
Q 014154 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--RPVMSFDFRETP--IKAVAEEPDSF-NIYIGNGSGDLASVDIRTG 290 (430)
Q Consensus 216 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~--i~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~ 290 (430)
|+++.-. ...|+.|+.|..||.|++||.+... .++.....|+.. |..+.+.++|- .|++|+.+|.|++||+|..
T Consensus 1211 vTaLS~~-~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1211 VTALSAD-LVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred ceeeccc-ccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 6666553 4568999999999999999998643 367778888877 99999988774 5999999999999999984
Q ss_pred eEEe--eeeCCC--CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEe----eccccceEEeeeccccccc-c
Q 014154 291 KLLG--CFIGKC--SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL----KQHLNEVVFDSAFADKEVA-N 361 (430)
Q Consensus 291 ~~~~--~~~~~~--~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~v~~~~~s~~g~~-~ 361 (430)
.... .+..|- .+..+++..|+..+.+|+|+. +.|+||++. |+.+..+.. -+.....+.+++|+|-..+ +
T Consensus 1290 ~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llA 1367 (1387)
T KOG1517|consen 1290 SKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLA 1367 (1387)
T ss_pred cccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhh
Confidence 3222 222221 224899999999999999998 999999986 444433221 1222334689999999888 8
Q ss_pred ccCCCCceEecCCCCC
Q 014154 362 AAADAPMLEIQNGNDT 377 (430)
Q Consensus 362 ~~~~d~~i~~~~~~~~ 377 (430)
+|..|.+|.||.....
T Consensus 1368 aG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1368 AGSADSTVSIYSCEKP 1383 (1387)
T ss_pred hccCCceEEEeecCCc
Confidence 9999999999987653
No 159
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=9.8e-20 Score=151.60 Aligned_cols=280 Identities=12% Similarity=0.096 Sum_probs=192.5
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
.+++++-..|.|++||..++ +.+..|.+++..+..+.|.-.+.|. .+.+++.||+|++||++.......+..-
T Consensus 41 ~~vav~lSngsv~lyd~~tg-----~~l~~fk~~~~~~N~vrf~~~ds~h--~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG-----QLLEEFKGPPATTNGVRFISCDSPH--GVISCSSDGTVRLWDIRSQAESARISWT 113 (376)
T ss_pred eeEEEEecCCeEEEEeccch-----hhhheecCCCCcccceEEecCCCCC--eeEEeccCCeEEEEEeecchhhhheecc
Confidence 45888999999999999998 8899999999988888888765554 5899999999999999876655544321
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEcc----CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEE
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT----KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~ 170 (430)
.. + ..++.++..-- .. +.+..+++ +-.+.+|++..... .++.|.-.|...|+++.|
T Consensus 114 ~~----~-~~~f~~ld~nc-k~-------~ii~~GtE~~~s~A~v~lwDvR~~qq-------~l~~~~eSH~DDVT~lrF 173 (376)
T KOG1188|consen 114 QQ----S-GTPFICLDLNC-KK-------NIIACGTELTRSDASVVLWDVRSEQQ-------LLRQLNESHNDDVTQLRF 173 (376)
T ss_pred CC----C-CCcceEeeccC-cC-------CeEEeccccccCceEEEEEEeccccc-------hhhhhhhhccCcceeEEe
Confidence 00 0 12333222211 11 24444432 44688999875543 588888889999999999
Q ss_pred cC-CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc
Q 014154 171 DI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR 249 (430)
Q Consensus 171 ~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 249 (430)
+| +.++|++|+.||-|.+||++.....-.+.. .+.+...|.++.|+ ++.-..|.+-+...+..+|++..+..
T Consensus 174 HP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~------viN~~sSI~~igw~-~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 174 HPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH------VINHGSSIHLIGWL-SKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred cCCCCCeEEeecccceEEeeecCCCcchhhHHH------hhcccceeeeeeee-cCCcceEEEEEccCceeEEEccCCCh
Confidence 99 568999999999999999975422111100 11223669999996 45445788889999999999998653
Q ss_pred ceEEEeecC-------------CCeEEEEecCCCCEEEEEeC-CCcEEEEEcc---C---CeEEeeeeCCCCCCeEEEEe
Q 014154 250 PVMSFDFRE-------------TPIKAVAEEPDSFNIYIGNG-SGDLASVDIR---T---GKLLGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 250 ~~~~~~~~~-------------~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~---~---~~~~~~~~~~~~~~v~~i~~ 309 (430)
...+.... .-|.+. ...+..++++++. .|...++-+. + .+.+..+.++|..-|+++.|
T Consensus 247 -~~~~~~~~~~~~d~r~~~~~dY~I~~~-~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~ 324 (376)
T KOG1188|consen 247 -ETWLENPDVSADDLRKEDNCDYVINEH-SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILF 324 (376)
T ss_pred -hhcccCccchhhhHHhhhhhhheeecc-cCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhh
Confidence 33322210 011111 1123345555444 5666665433 2 34566777766888999999
Q ss_pred cCCCCeEEEEeCCCcEEEEEC
Q 014154 310 HPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 310 ~~~~~~l~s~~~dg~i~iwd~ 330 (430)
...+.++.|||+||.+.+|..
T Consensus 325 ~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 325 DVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred hcccceeeccCCCceEEEEec
Confidence 988999999999999999986
No 160
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=2.8e-19 Score=148.09 Aligned_cols=301 Identities=12% Similarity=0.061 Sum_probs=203.6
Q ss_pred CCCCCcceeeeee-cCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCce
Q 014154 47 DPHSSNCVLAASI-DDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (430)
Q Consensus 47 ~~~~~~~~~~~~~-~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 125 (430)
.|..++..++|.. .+.-+-+.+|+.+. ..+.+|.....--+..++..... ...+.-.++.-.++....+ ..
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~--d~~Esfytcsw~yd~~~~~-----p~ 107 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADE--DHDESFYTCSWSYDSNTGN-----PF 107 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCC--CCCcceEEEEEEecCCCCC-----ee
Confidence 4677777777763 22222245555543 67888887533323333332111 1112222222223332212 57
Q ss_pred EEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEeeCCCC
Q 014154 126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (430)
Q Consensus 126 ~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 204 (430)
+++++.-|.++|.++.... +.-.-..|+..|..+.++|. .+++++++.|..|++|++++..++..+.+..
T Consensus 108 la~~G~~GvIrVid~~~~~---------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~e 178 (385)
T KOG1034|consen 108 LAAGGYLGVIRVIDVVSGQ---------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVE 178 (385)
T ss_pred EEeecceeEEEEEecchhh---------hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccc
Confidence 7888888889998875432 22233478999999999995 5789999999999999999999998877644
Q ss_pred CCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc--------------------------ce-EEEeec
Q 014154 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR--------------------------PV-MSFDFR 257 (430)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------------------~~-~~~~~~ 257 (430)
. |...|.++.| +.++.+|++++.|.+|++|++...+- |. .+-..|
T Consensus 179 g------HrdeVLSvD~--~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH 250 (385)
T KOG1034|consen 179 G------HRDEVLSVDF--SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH 250 (385)
T ss_pred c------ccCcEEEEEE--cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence 3 3478999999 89999999999999999999983210 00 022335
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEEc-cCC-------------eEEeeeeCCCCCCeEEE--EecCCCCeEEEEeC
Q 014154 258 ETPIKAVAEEPDSFNIYIGNGSGDLASVDI-RTG-------------KLLGCFIGKCSGSIRSI--ARHPTLPIIASCGL 321 (430)
Q Consensus 258 ~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~-~~~-------------~~~~~~~~~~~~~v~~i--~~~~~~~~l~s~~~ 321 (430)
...|.|+.|- |.++++-+.++.|..|-. +-. ..+.++.-. ...|+-+ +|.|-+++||.|..
T Consensus 251 rnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~-~c~iWfirf~~d~~~~~la~gnq 327 (385)
T KOG1034|consen 251 RNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP-MCDIWFIRFAFDPWQKMLALGNQ 327 (385)
T ss_pred cchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC-ccceEEEEEeecHHHHHHhhccC
Confidence 5666677775 569999999999999976 211 123333332 3445544 55677889999999
Q ss_pred CCcEEEEECCCCceeeEEE-eeccccceEEeeeccccccc-cccCCCCceEecCCC
Q 014154 322 DSYLRFWDIKTRQLLSAVF-LKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 322 dg~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~ 375 (430)
.|.|++||++...+...-. ........|...+|+.||.+ +...+|++|.-|+.-
T Consensus 328 ~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 328 SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999999876632211 22334566899999999999 899999999988763
No 161
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.85 E-value=5e-19 Score=158.71 Aligned_cols=161 Identities=17% Similarity=0.171 Sum_probs=129.0
Q ss_pred CcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC------cceEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEE
Q 014154 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------RPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASV 285 (430)
Q Consensus 213 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iw 285 (430)
...|+.+.|. +-|...|++++.||.|++|.+..+. .+-..+..|...|+++.|+|-. ..|++++.|-+|++|
T Consensus 627 gt~vtDl~Wd-PFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 627 GTLVTDLHWD-PFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred CceeeecccC-CCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 3568899995 3477899999999999999987532 3556788999999999999953 688999999999999
Q ss_pred EccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCce-eeEEEeeccccceEEeeeccccccc-ccc
Q 014154 286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL-LSAVFLKQHLNEVVFDSAFADKEVA-NAA 363 (430)
Q Consensus 286 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~-~~~ 363 (430)
|+++++....+.+| ...|..++|||+|+.+++.+.||+|+||+.++++. ++. -.+..+..--.+.|.-||++ ++.
T Consensus 706 Dl~~~~~~~~l~gH-tdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~E--g~gpvgtRgARi~wacdgr~viv~ 782 (1012)
T KOG1445|consen 706 DLANAKLYSRLVGH-TDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYE--GKGPVGTRGARILWACDGRIVIVV 782 (1012)
T ss_pred ehhhhhhhheeccC-cCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcccc--CCCCccCcceeEEEEecCcEEEEe
Confidence 99999999999999 99999999999999999999999999999987653 332 33333333456778888888 555
Q ss_pred CCC----CceEecCCCCC
Q 014154 364 ADA----PMLEIQNGNDT 377 (430)
Q Consensus 364 ~~d----~~i~~~~~~~~ 377 (430)
+.| ..|.+|+....
T Consensus 783 Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 783 GFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred cccccchhhhhhhhhhhc
Confidence 443 46777776543
No 162
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=5.1e-19 Score=144.12 Aligned_cols=233 Identities=16% Similarity=0.160 Sum_probs=170.8
Q ss_pred eeEEEEeeecCcc-ccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-eEeeCCCCCCCCCCc
Q 014154 134 KASMRSIEVTKVS-AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIF 211 (430)
Q Consensus 134 ~~~v~~~~~~~~~-~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~ 211 (430)
...||.+...-.. ....-..+...+..+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+...... .
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~----e 168 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESA----E 168 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccc----c
Confidence 3568877544321 11122344445544556899999999999998766 77999999987665 3333322111 1
Q ss_pred CCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCC-EEEEEeCCCcEEEEEccCC
Q 014154 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTG 290 (430)
Q Consensus 212 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~ 290 (430)
+....++.+|.|+.+++.+++ ..|+++..||+++..+....-..|...|..+.|+|+.+ +|++++.||.|+|||.|.-
T Consensus 169 ~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t 247 (370)
T KOG1007|consen 169 MRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT 247 (370)
T ss_pred ccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC
Confidence 235577888976668888887 56899999999997775666677888999999999874 6678889999999999965
Q ss_pred -eEEeeeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEEEECCCCc-----------------------------eeeEE
Q 014154 291 -KLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQ-----------------------------LLSAV 339 (430)
Q Consensus 291 -~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~~~~-----------------------------~~~~~ 339 (430)
.++.++.+| ...|.++.|+|.. ++|+++|.|..|.+|...+-. .+.+
T Consensus 248 k~pv~el~~H-sHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~t- 325 (370)
T KOG1007|consen 248 KFPVQELPGH-SHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLET- 325 (370)
T ss_pred CccccccCCC-ceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccc-
Confidence 468899998 9999999999965 678999999999999763211 0112
Q ss_pred EeeccccceEEeeeccccccc--cccCCCCceEecCCCC
Q 014154 340 FLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGND 376 (430)
Q Consensus 340 ~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~ 376 (430)
+..| ...|++++||.-..+ ++-+.||.+.|=..+.
T Consensus 326 -ydeh-EDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 326 -YDEH-EDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred -cccc-ccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 3345 445799999998877 7788999998866543
No 163
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=5.1e-19 Score=147.36 Aligned_cols=282 Identities=15% Similarity=0.187 Sum_probs=195.1
Q ss_pred ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc
Q 014154 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~ 145 (430)
..+|++...|.|++||..+++.+..|+++. ..+..+.+.+.... ..+++|+.||++++|++.....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~--------~~~N~vrf~~~ds~------h~v~s~ssDG~Vr~wD~Rs~~e 106 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPP--------ATTNGVRFISCDSP------HGVISCSSDGTVRLWDIRSQAE 106 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCC--------CcccceEEecCCCC------CeeEEeccCCeEEEEEeecchh
Confidence 458999999999999999999999988742 24455677664321 4789999999999999875532
Q ss_pred cccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeC----CCeEEEEECCCCee-eEeeCCCCCCCCCCcCCcceeEEE
Q 014154 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK----GVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAA 220 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~ 220 (430)
.....|.-..+.+..+++.+.+++.+++|+. +-.|.+||++..+. +..+.. .|.+.|+++.
T Consensus 107 ------~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e--------SH~DDVT~lr 172 (376)
T KOG1188|consen 107 ------SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE--------SHNDDVTQLR 172 (376)
T ss_pred ------hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh--------hccCcceeEE
Confidence 2334444333456778888778888888764 56799999987665 443332 1347899999
Q ss_pred EeecCCCCEEEEEeCCCcEEEEECCCCCc--ceEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeEEeeee
Q 014154 221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRR--PVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFI 297 (430)
Q Consensus 221 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~ 297 (430)
|+ +.+.++|++|+.||.|.|||+..... ++...-.|...|.++.|..++ +.|++-+......+|++..+.....+.
T Consensus 173 FH-P~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 173 FH-PSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred ec-CCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 97 45778999999999999999986422 233333466789999998776 568888899999999999887654443
Q ss_pred CC-----------CCCCeEEEEecCCCCeEEEEeC-CCcEEEEECC---CCceeeEE-EeeccccceEEeeeccccccc-
Q 014154 298 GK-----------CSGSIRSIARHPTLPIIASCGL-DSYLRFWDIK---TRQLLSAV-FLKQHLNEVVFDSAFADKEVA- 360 (430)
Q Consensus 298 ~~-----------~~~~v~~i~~~~~~~~l~s~~~-dg~i~iwd~~---~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~- 360 (430)
.. ....+.......+...++.++. -+...++-+. ++...... .+.++...+|.++.|...+.+
T Consensus 252 ~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l 331 (376)
T KOG1188|consen 252 NPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVL 331 (376)
T ss_pred CccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccccee
Confidence 21 0011111111223445555554 4555555433 33322211 156655788899999887777
Q ss_pred cccCCCCceEecCCCC
Q 014154 361 NAAADAPMLEIQNGND 376 (430)
Q Consensus 361 ~~~~~d~~i~~~~~~~ 376 (430)
.+|+.||.+.+|..+.
T Consensus 332 ~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 332 YTGGEDGLLQAWKVED 347 (376)
T ss_pred eccCCCceEEEEecCC
Confidence 9999999999998733
No 164
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=5.2e-19 Score=146.58 Aligned_cols=292 Identities=14% Similarity=0.200 Sum_probs=204.4
Q ss_pred CCCCcceeeecCCCceEEEEccCCCCCcceeeeecCC--CCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccc
Q 014154 11 GCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGD--PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR 88 (430)
Q Consensus 11 ~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~ 88 (430)
+|..-.+++......+.+++.... +-..+++.+.. |+..-.-.+++++-.....+||+|+.-|.|+|.|+.+++..
T Consensus 51 ~~~e~~vfatvG~~rvtiy~c~~d--~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~ 128 (385)
T KOG1034|consen 51 GCDEPQVFATVGGNRVTIYECPGD--GGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS 128 (385)
T ss_pred CCCCCceEEEeCCcEEEEEEECCc--cceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc
Confidence 343333333333467889988763 22345556554 44454445566544433578999999999999999999988
Q ss_pred ceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEee--ecCCCceE
Q 014154 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIA 166 (430)
Q Consensus 89 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~--~~~~~~i~ 166 (430)
..+.+| ...|..+.+.+... +.+++++.|+.+++|++.... .|.++- ..|...|.
T Consensus 129 ~~~~gh--------G~sINeik~~p~~~-------qlvls~SkD~svRlwnI~~~~--------Cv~VfGG~egHrdeVL 185 (385)
T KOG1034|consen 129 KNYRGH--------GGSINEIKFHPDRP-------QLVLSASKDHSVRLWNIQTDV--------CVAVFGGVEGHRDEVL 185 (385)
T ss_pred cceecc--------CccchhhhcCCCCC-------cEEEEecCCceEEEEeccCCe--------EEEEecccccccCcEE
Confidence 887764 56888888888776 799999999999999997543 444443 25778999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeee------EeeCC---------CCCCC----CCCcCCcceeEEEEeecCCC
Q 014154 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKI------WTAKP---------PPKNS----LGIFTPTWFTSAAFLSIDDH 227 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~------~~~~~---------~~~~~----~~~~~~~~v~~~~~~~~~~~ 227 (430)
++.|++++.+|++++.|.+|.+|++...+.. ..+.. ...+. ..--|...|.|+.| -|
T Consensus 186 SvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw----~g 261 (385)
T KOG1034|consen 186 SVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW----FG 261 (385)
T ss_pred EEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH----Hh
Confidence 9999999999999999999999999843211 01100 00000 11124567888888 36
Q ss_pred CEEEEEeCCCcEEEEECCCCCc-------------ceEEEeecCCCeEEEE--ecCCCCEEEEEeCCCcEEEEEccCCeE
Q 014154 228 RKFVAGTNDHQVRLYDTSAQRR-------------PVMSFDFRETPIKAVA--EEPDSFNIYIGNGSGDLASVDIRTGKL 292 (430)
Q Consensus 228 ~~l~s~~~dg~i~iwd~~~~~~-------------~~~~~~~~~~~i~~~~--~sp~~~~l~~~~~d~~i~iwd~~~~~~ 292 (430)
+++++-+.++.|..|.....+. .+..++-....|.-+. |.|-++.|+.|...|.|.+||++...+
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence 8999999999999998822111 1223333344555554 466789999999999999999997665
Q ss_pred E--eeee-CCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154 293 L--GCFI-GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 293 ~--~~~~-~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
. .++. ......|...+|+.|+.+|+....|++|.-||..
T Consensus 342 ~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 342 PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 2 1111 1124679999999999999999999999999853
No 165
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.84 E-value=2.4e-19 Score=144.16 Aligned_cols=263 Identities=14% Similarity=0.118 Sum_probs=180.2
Q ss_pred ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccC
Q 014154 44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (430)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 123 (430)
.+..|...+.++.|.- + .+|.+|..-|.|++|++.+.+....+..+ +...|..++..+.
T Consensus 9 vLRp~~~~v~s~~fqa--~---~rL~sg~~~G~V~~w~lqt~r~~~~~r~~-------g~~~it~lq~~p~--------- 67 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQA--N---ERLMSGLSVGIVKMWVLQTERDLPLIRLF-------GRLFITNLQSIPN--------- 67 (323)
T ss_pred Eeccccchheehhhcc--c---hhhhcccccceEEEEEeecCccchhhhhh-------ccceeeceeecCC---------
Confidence 4557777755554433 2 35999999999999999988877777643 2345655555543
Q ss_pred ceEEEEccCCeeEEEEeeecCc---------------cccCCCcc--------------------------eEEeeec--
Q 014154 124 RTLLTCTTKGKASMRSIEVTKV---------------SAESSCST--------------------------VKSWNVC-- 160 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~---------------~~~~~~~~--------------------------i~~~~~~-- 160 (430)
+.+.+-..|..+.+|.+.++.- .+-..... +++-+..
T Consensus 68 d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~ 147 (323)
T KOG0322|consen 68 DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSER 147 (323)
T ss_pred cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhc
Confidence 3666777777777777766321 00000000 0000000
Q ss_pred -CCCceEEEEEcC-C--CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCC-CCcCCcceeEEEEeecCCCCEEEEEeC
Q 014154 161 -ASGTIAFSKVDI-S--EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL-GIFTPTWFTSAAFLSIDDHRKFVAGTN 235 (430)
Q Consensus 161 -~~~~i~~~~~~~-~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~ 235 (430)
..+.+.|..+.. . .-+|++|-.+|.+.+||+.++..+..+........ -..|..+|.++.| .+.-..=++|+.
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldy--as~~~rGisgga 225 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDY--ASSCDRGISGGA 225 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeee--chhhcCCcCCCc
Confidence 013355555332 2 23456778899999999999866555544322221 2234578999999 444445577888
Q ss_pred CCcEEEEECCCC--CcceE-EEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCC
Q 014154 236 DHQVRLYDTSAQ--RRPVM-SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 236 dg~i~iwd~~~~--~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~ 312 (430)
+..+..|.++.. ..++. .+....-.|..+.+-||++.+++++.|+.||+|..++.+++..++-| .+.|++++|+|+
T Consensus 226 ~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH-sagvn~vAfspd 304 (323)
T KOG0322|consen 226 DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH-SAGVNAVAFSPD 304 (323)
T ss_pred cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh-hcceeEEEeCCC
Confidence 888999988753 11111 22223356888999999999999999999999999999999999998 899999999999
Q ss_pred CCeEEEEeCCCcEEEEEC
Q 014154 313 LPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 313 ~~~l~s~~~dg~i~iwd~ 330 (430)
..++|.++.|+.|.+|++
T Consensus 305 ~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 305 CELMAAASKDARISLWKL 322 (323)
T ss_pred CchhhhccCCceEEeeec
Confidence 999999999999999986
No 166
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=9.8e-19 Score=165.27 Aligned_cols=286 Identities=14% Similarity=0.167 Sum_probs=191.3
Q ss_pred ceeeecCCCceEEEEccCCCCCcceeeeecCCCC-CCcceeeeeecCCCCCceeEEeecCCeEEEecCC-CC-cccceee
Q 014154 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH-SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL-NG-DLRVAIS 92 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~-~~-~~~~~~~ 92 (430)
.++++++.-.|+|||.+.+ +++..|..+. ....+..+.+-+..|-.+|++|+.||.|+||+-- +. +......
T Consensus 1078 ~i~~ad~r~~i~vwd~e~~-----~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVT 1152 (1387)
T KOG1517|consen 1078 QIAAADDRERIRVWDWEKG-----RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVT 1152 (1387)
T ss_pred eeEEcCCcceEEEEecccC-----ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEE
Confidence 3677887889999999998 6666665432 2233555665556677899999999999999743 22 1111122
Q ss_pred ccCCC-CCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeee--cCCCceEEEE
Q 014154 93 NAGDS-GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV--CASGTIAFSK 169 (430)
Q Consensus 93 ~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~--~~~~~i~~~~ 169 (430)
+..++ +..+.......+.-|.... +.+++++.-..++||+.... ..+-++ ..+..++++.
T Consensus 1153 aw~~Ls~~~~~~r~~~~v~dWqQ~~-------G~Ll~tGd~r~IRIWDa~~E----------~~~~diP~~s~t~vTaLS 1215 (1387)
T KOG1517|consen 1153 AWSSLSDQLPGARGTGLVVDWQQQS-------GHLLVTGDVRSIRIWDAHKE----------QVVADIPYGSSTLVTALS 1215 (1387)
T ss_pred eeccccccCccCCCCCeeeehhhhC-------CeEEecCCeeEEEEEecccc----------eeEeecccCCCccceeec
Confidence 21111 1112222232355565555 77887777778888886532 222222 2334566655
Q ss_pred EcC-CCCEEEEEeCCCeEEEEECCCCe---eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEEEEEC
Q 014154 170 VDI-SEKFSLFGGKGVEVNVWDLDKCE---KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDT 244 (430)
Q Consensus 170 ~~~-~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~ 244 (430)
-+. .|+.+++|..||.|++||.+... .+...+.|... ..|..+.+ .+.|. .|++|+.+|.|++||+
T Consensus 1216 ~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~-------~~Iv~~sl--q~~G~~elvSgs~~G~I~~~Dl 1286 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV-------EPIVHLSL--QRQGLGELVSGSQDGDIQLLDL 1286 (1387)
T ss_pred ccccCCceEEEeecCCceEEeecccCCccccceeecccCCc-------ccceeEEe--ecCCCcceeeeccCCeEEEEec
Confidence 433 57999999999999999987532 34444444311 23888888 55554 5999999999999999
Q ss_pred CCC-CcceEEEeecC---CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeee------CCCCCCeEEEEecCCCC
Q 014154 245 SAQ-RRPVMSFDFRE---TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI------GKCSGSIRSIARHPTLP 314 (430)
Q Consensus 245 ~~~-~~~~~~~~~~~---~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------~~~~~~v~~i~~~~~~~ 314 (430)
+.. ......+..|- +..+++..++....+++|+. +.|.||++. |+.+..++ +...+.+.+++|||...
T Consensus 1287 R~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~ 1364 (1387)
T KOG1517|consen 1287 RMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRL 1364 (1387)
T ss_pred ccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhH
Confidence 973 22223333332 35999999999999999988 999999984 44443333 22245789999999999
Q ss_pred eEEEEeCCCcEEEEECCCCc
Q 014154 315 IIASCGLDSYLRFWDIKTRQ 334 (430)
Q Consensus 315 ~l~s~~~dg~i~iwd~~~~~ 334 (430)
+++.|+.|.+|.||.....+
T Consensus 1365 llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1365 LLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhhhccCCceEEEeecCCcC
Confidence 99999999999999876544
No 167
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=6.8e-20 Score=174.84 Aligned_cols=239 Identities=14% Similarity=0.228 Sum_probs=187.2
Q ss_pred eeEEeecCCeEEEecCCCC---cccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeec
Q 014154 67 LLAVARKNGLTDILNPLNG---DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~ 143 (430)
+||.|..||.|.+||...- .....+.. +.-|.+.+.++.+..... +.+++|..+|.+.||++...
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~-----~~~h~G~V~gLDfN~~q~-------nlLASGa~~geI~iWDlnn~ 149 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLAT-----KSKHTGPVLGLDFNPFQG-------NLLASGADDGEILIWDLNKP 149 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhh-----hcccCCceeeeeccccCC-------ceeeccCCCCcEEEeccCCc
Confidence 5888999999999998642 21111111 334567888888777665 68999999999999998764
Q ss_pred CccccCCCcceEEeeecCCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEe
Q 014154 144 KVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (430)
Q Consensus 144 ~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (430)
..... -+ .......|.+++|+.. ...|++++.+|.+.|||++..+.+..+..+... ..+..++|
T Consensus 150 ~tP~~--~~-----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~-------~~~S~l~W- 214 (1049)
T KOG0307|consen 150 ETPFT--PG-----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGR-------MHCSVLAW- 214 (1049)
T ss_pred CCCCC--CC-----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCc-------cceeeeee-
Confidence 32110 00 2234578999999874 567888999999999999988777766655432 34778999
Q ss_pred ecCCC-CEEEEEeCCC---cEEEEECCCCCcceEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeEEeeee
Q 014154 223 SIDDH-RKFVAGTNDH---QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFI 297 (430)
Q Consensus 223 ~~~~~-~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~ 297 (430)
+|+. ..|++++.|. .|.+||+|....+++.+++|...|.++.|++.+ .+|++++.|+.|.+|+..+++.+..+.
T Consensus 215 -hP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 215 -HPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred -CCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence 4544 4666666554 599999998888999999999999999999877 899999999999999999999999999
Q ss_pred CCCCCCeEEEEecCCCC-eEEEEeCCCcEEEEECCCCc
Q 014154 298 GKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTRQ 334 (430)
Q Consensus 298 ~~~~~~v~~i~~~~~~~-~l~s~~~dg~i~iwd~~~~~ 334 (430)
.. ..++..+.|+|... .++.++.||.|.||.+.+..
T Consensus 294 ~~-~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 294 AQ-GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CC-CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 86 88999999999776 78899999999999987644
No 168
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=6.4e-18 Score=134.51 Aligned_cols=275 Identities=17% Similarity=0.132 Sum_probs=188.0
Q ss_pred CCCCceeEEeecCCeEEEecCCCCcccce-eec-cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEE
Q 014154 62 SQNDPLLAVARKNGLTDILNPLNGDLRVA-ISN-AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS 139 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~ 139 (430)
+|.+++|++|..+|.|.+..+..-..-.. -++ ..-+.+.+|+.++..+.+.+ ..+++++. |.++-|.
T Consensus 19 sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d----------~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 19 SPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD----------DFLLSGGD-GLVYGWE 87 (325)
T ss_pred CCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh----------hheeeccC-ceEEEee
Confidence 78889999999999999998853211111 011 11122456778888887774 36666555 7777665
Q ss_pred eeecCccccCCCcceEEeeecC--------CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCc
Q 014154 140 IEVTKVSAESSCSTVKSWNVCA--------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (430)
Q Consensus 140 ~~~~~~~~~~~~~~i~~~~~~~--------~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 211 (430)
-..... ..+.-++|.... -..|+++.+.|..+-+++++.|+.++.||+++|+..+++++|.
T Consensus 88 W~E~~e----s~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHt------- 156 (325)
T KOG0649|consen 88 WNEEEE----SLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHT------- 156 (325)
T ss_pred ehhhhh----hccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCc-------
Confidence 433221 112333444321 2468899999999988889999999999999999999999987
Q ss_pred CCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee---------c-CCCeEEEEecCCCCEEEEEeCCCc
Q 014154 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF---------R-ETPIKAVAEEPDSFNIYIGNGSGD 281 (430)
Q Consensus 212 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------~-~~~i~~~~~sp~~~~l~~~~~d~~ 281 (430)
+.|.++.- -.....+++|++||++++||+++++. +..+.. | ...|.+++.+ ..+|++|+ .-.
T Consensus 157 --DYvH~vv~--R~~~~qilsG~EDGtvRvWd~kt~k~-v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~ 228 (325)
T KOG0649|consen 157 --DYVHSVVG--RNANGQILSGAEDGTVRVWDTKTQKH-VSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPK 228 (325)
T ss_pred --ceeeeeee--cccCcceeecCCCccEEEEeccccce-eEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCc
Confidence 88988887 34456799999999999999999764 554432 1 2356777765 44888775 456
Q ss_pred EEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccc-cc
Q 014154 282 LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE-VA 360 (430)
Q Consensus 282 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~ 360 (430)
+.+|.++..++...|.- .+++..+.| ....+++++.-+.|.-|.+. |.+...+... + ...++..|+..- ++
T Consensus 229 lslwhLrsse~t~vfpi--pa~v~~v~F--~~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~-s--~~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 229 LSLWHLRSSESTCVFPI--PARVHLVDF--VDDCVLIGGEGNHVQSYTLN-GVLQANIPVE-S--TACYSASWQTSPIKF 300 (325)
T ss_pred eeEEeccCCCceEEEec--ccceeEeee--ecceEEEeccccceeeeeec-cEEEEeccCC-c--cceeeecccCCceEE
Confidence 99999999998888875 578889999 44568888888889999874 5544443222 2 223444444332 22
Q ss_pred -cccCCCCceEecCC
Q 014154 361 -NAAADAPMLEIQNG 374 (430)
Q Consensus 361 -~~~~~d~~i~~~~~ 374 (430)
-.++..+.+.|+..
T Consensus 301 ~s~ag~s~~~~i~~~ 315 (325)
T KOG0649|consen 301 ISIAGFSNKLHILKD 315 (325)
T ss_pred EEecccceeeeeeec
Confidence 44556677777643
No 169
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=2.2e-18 Score=146.25 Aligned_cols=204 Identities=8% Similarity=0.080 Sum_probs=162.4
Q ss_pred cCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCee-------eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE
Q 014154 160 CASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEK-------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (430)
Q Consensus 160 ~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 231 (430)
.|.++|..++|+| +.+.||+|+.|.+|.||.+..+.. +..+.+|. ..|-.++|++ -..+.|+
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~---------rrVg~V~wHP-tA~NVLl 148 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ---------RRVGLVQWHP-TAPNVLL 148 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecc---------eeEEEEeecc-cchhhHh
Confidence 6789999999999 778899999999999999976433 33444443 6788999963 2456899
Q ss_pred EEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecC
Q 014154 232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP 311 (430)
Q Consensus 232 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~ 311 (430)
+++.|..|.+|++.++.. +..+. |...|.++.|+.||.+|++.+.|..|+|||.++++.+.+-.+|....-..+.|-.
T Consensus 149 sag~Dn~v~iWnv~tgea-li~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 149 SAGSDNTVSIWNVGTGEA-LITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA 226 (472)
T ss_pred hccCCceEEEEeccCCce-eeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec
Confidence 999999999999999875 55566 9999999999999999999999999999999999999888888556677788989
Q ss_pred CCCeEEEE---eCCCcEEEEECCCCce-eeEEEeeccccceEEeeeccccccc--cccCCCCceEecCCCCC
Q 014154 312 TLPIIASC---GLDSYLRFWDIKTRQL-LSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 312 ~~~~l~s~---~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~~ 377 (430)
++.++.|| ..+..+-+||..+-+. +....+.. +..|.-.-|.+|..+ ++|-.|+.|+.|+....
T Consensus 227 ~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt--SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 227 SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT--SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred cCceeeeccccccccceeccCcccccCcceeEEecc--CCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 99855444 2567899999876433 22222333 334566678888876 88999999999988653
No 170
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.81 E-value=6e-18 Score=152.69 Aligned_cols=273 Identities=11% Similarity=0.109 Sum_probs=207.5
Q ss_pred ceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccC
Q 014154 53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK 132 (430)
Q Consensus 53 ~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (430)
++-.++| .|||..|+.+. +..+.+||..+|..+.++++| .+.+.++.+.... ..+++|+.|
T Consensus 14 ci~d~af--kPDGsqL~lAA-g~rlliyD~ndG~llqtLKgH--------KDtVycVAys~dG--------krFASG~aD 74 (1081)
T KOG1538|consen 14 CINDIAF--KPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGH--------KDTVYCVAYAKDG--------KRFASGSAD 74 (1081)
T ss_pred chheeEE--CCCCceEEEec-CCEEEEEeCCCcccccccccc--------cceEEEEEEccCC--------ceeccCCCc
Confidence 3445566 77887777764 467999999999999999885 4467766665544 489999999
Q ss_pred CeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcC
Q 014154 133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212 (430)
Q Consensus 133 g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 212 (430)
..+.+|+-... | +....|+..|.|+.|+|-...|++++.+ ..-+|..+....... +.
T Consensus 75 K~VI~W~~klE--------G---~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~-ks---------- 131 (1081)
T KOG1538|consen 75 KSVIIWTSKLE--------G---ILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH-KS---------- 131 (1081)
T ss_pred eeEEEeccccc--------c---eeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh-hh----------
Confidence 99999975422 2 3445788999999999999999998876 677888764332211 11
Q ss_pred CcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE--eecCCCeEEEEecCCC-----CEEEEEeCCCcEEEE
Q 014154 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF--DFRETPIKAVAEEPDS-----FNIYIGNGSGDLASV 285 (430)
Q Consensus 213 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~i~~~~~sp~~-----~~l~~~~~d~~i~iw 285 (430)
...+.+++| ..||++|+.|-.+|+|.+-+-....+ +..- .+.+.+|.+++|+|.. ..+++.....++.+|
T Consensus 132 s~R~~~CsW--tnDGqylalG~~nGTIsiRNk~gEek-~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy 208 (1081)
T KOG1538|consen 132 SSRIICCSW--TNDGQYLALGMFNGTISIRNKNGEEK-VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFY 208 (1081)
T ss_pred heeEEEeee--cCCCcEEEEeccCceEEeecCCCCcc-eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEE
Confidence 166889999 89999999999999999987654332 2222 2356799999999964 577788888888888
Q ss_pred EccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccC
Q 014154 286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAA 364 (430)
Q Consensus 286 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~ 364 (430)
.+ +|+.+..-+.- .-...|+.+.++|.+++.||.|+.+.+|. +.|-.+.++ +..+..||.++..|+++. +.|.
T Consensus 209 ~L-sG~~Igk~r~L-~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTv---g~~D~WIWtV~~~PNsQ~v~~GC 282 (1081)
T KOG1538|consen 209 QL-SGKQIGKDRAL-NFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTV---GEQDSWIWTVQAKPNSQYVVVGC 282 (1081)
T ss_pred Ee-cceeecccccC-CCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeec---cccceeEEEEEEccCCceEEEEE
Confidence 87 56665544333 34567899999999999999999999996 457777763 346889999999999999 8899
Q ss_pred CCCceEecCCCC
Q 014154 365 DAPMLEIQNGND 376 (430)
Q Consensus 365 ~d~~i~~~~~~~ 376 (430)
.||+|..|+...
T Consensus 283 qDGTiACyNl~f 294 (1081)
T KOG1538|consen 283 QDGTIACYNLIF 294 (1081)
T ss_pred ccCeeehhhhHH
Confidence 999999998643
No 171
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=1.7e-15 Score=142.39 Aligned_cols=315 Identities=18% Similarity=0.298 Sum_probs=220.9
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCc-eeEEe-ecCCeEEEecCCC-Cccccee
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDP-LLAVA-RKNGLTDILNPLN-GDLRVAI 91 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~-~l~~g-~~dg~i~iwd~~~-~~~~~~~ 91 (430)
..+++++.|+.+.+|+...+. ..+..+..... ..+..+... .+++. +++.. ..|+.+.+|+... ......+
T Consensus 78 ~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 151 (466)
T COG2319 78 ELLLSGSSDGTIKLWDLDNGE----KLIKSLEGLHD-SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL 151 (466)
T ss_pred cEEEEecCCCcEEEEEcCCCc----eeEEEEeccCC-CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEE
Confidence 346667789999999999861 14555555332 224444444 55666 45553 4499999999976 5555555
Q ss_pred eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEcc-CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEE
Q 014154 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~ 170 (430)
..+ ...+..+.+.+... .++.+.. ++.+.+|++.... .+.... .|...+.++++
T Consensus 152 ~~~--------~~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~v~~~~~ 206 (466)
T COG2319 152 EGH--------SESVTSLAFSPDGK--------LLASGSSLDGTIKLWDLRTGK--------PLSTLA-GHTDPVSSLAF 206 (466)
T ss_pred ecC--------cccEEEEEECCCCC--------EEEecCCCCCceEEEEcCCCc--------eEEeec-cCCCceEEEEE
Confidence 442 33555566655432 5666664 9999999976422 333333 36789999999
Q ss_pred cCCCC-EEEEEeCCCeEEEEECCCCeeeE-eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC
Q 014154 171 DISEK-FSLFGGKGVEVNVWDLDKCEKIW-TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (430)
Q Consensus 171 ~~~~~-~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (430)
+|++. .+++++.|+.|++||...+.... .+..+. ... ...| ++++.++++++.|+.+++|++....
T Consensus 207 ~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~---------~~~-~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS---------DSV-VSSF--SPDGSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred cCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCC---------cce-eEeE--CCCCCEEEEecCCCcEEEeeecCCC
Confidence 99888 55555999999999988776666 455543 222 2266 7888888999999999999999755
Q ss_pred cceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeee--CCCCCCeEEEEecCCCCeEEEE-eCCCcE
Q 014154 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI--GKCSGSIRSIARHPTLPIIASC-GLDSYL 325 (430)
Q Consensus 249 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~s~-~~dg~i 325 (430)
..+..+..|...+.++.|+|++..+++++.|+.+.+||+.+........ .| ...+..+.|.+++..++.+ ..|+.+
T Consensus 275 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~ 353 (466)
T COG2319 275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGH-EGPVSSLSFSPDGSLLVSGGSDDGTI 353 (466)
T ss_pred cEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeeccc-CCceEEEEECCCCCEEEEeecCCCcE
Confidence 4344446788899999999988888889999999999999888766665 66 6679999994343455555 688999
Q ss_pred EEEECCCCceeeEEEeeccccceEEeeeccccccc-cc-cCCCCceEecCCCCCc
Q 014154 326 RFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NA-AADAPMLEIQNGNDTQ 378 (430)
Q Consensus 326 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~-~~~d~~i~~~~~~~~~ 378 (430)
.+|++........ .... .. +..+.+++ ... .. +..++.+.+|+.....
T Consensus 354 ~~~~~~~~~~~~~--~~~~-~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 403 (466)
T COG2319 354 RLWDLRTGKPLKT--LEGH-SN-VLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGS 403 (466)
T ss_pred EeeecCCCceeEE--ecCC-ce-EEEEEECC-CCCEEEEecCCCceEEEecccCe
Confidence 9999988772222 2222 11 68888988 633 33 5889999999987653
No 172
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=1.1e-17 Score=138.56 Aligned_cols=275 Identities=15% Similarity=0.155 Sum_probs=198.5
Q ss_pred cceeeecCCCceEEEEccCCC-------CCcceeeeecCCCCCCcceeeeeec-----CCCCCceeEEeecCCeEEEecC
Q 014154 15 LRALTFDSLGLIKVIEARGEH-------GGVPKVVERWGDPHSSNCVLAASID-----DSQNDPLLAVARKNGLTDILNP 82 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~p~g~~l~~g~~dg~i~iwd~ 82 (430)
..+++-++|..+.+|++...- ....+....+.-. ...++...+|- ..|+..++|+.+.+.-|++||.
T Consensus 62 SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~-eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wda 140 (406)
T KOG2919|consen 62 SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ-EGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDA 140 (406)
T ss_pred ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec-cCCEEEEEEeeeccccCCCccceeeeccccCceeeeec
Confidence 567888999999999986421 0011111112211 22334555542 5688899999999999999999
Q ss_pred CCCcccceeeccCCCCCCCCCCceE---EEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEE-e-
Q 014154 83 LNGDLRVAISNAGDSGAQPEDDGIV---GLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS-W- 157 (430)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~-~- 157 (430)
-+|+...++.++... +.++ ++.+.+. +.-+-++....++|+++..... +-.+.. .
T Consensus 141 ftG~lraSy~~ydh~------de~taAhsL~Fs~D---------GeqlfaGykrcirvFdt~RpGr-----~c~vy~t~~ 200 (406)
T KOG2919|consen 141 FTGKLRASYRAYDHQ------DEYTAAHSLQFSPD---------GEQLFAGYKRCIRVFDTSRPGR-----DCPVYTTVT 200 (406)
T ss_pred cccccccchhhhhhH------HhhhhheeEEecCC---------CCeEeecccceEEEeeccCCCC-----CCcchhhhh
Confidence 999988887763221 1222 3444443 3444456677888888743321 111110 0
Q ss_pred --eecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe
Q 014154 158 --NVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT 234 (430)
Q Consensus 158 --~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 234 (430)
.....+.|.+++|+| +...++.|+....+-||.-....++..+.+|. ..|+.+.| .++|+.|++|+
T Consensus 201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~---------gGvThL~~--~edGn~lfsGa 269 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHG---------GGVTHLQW--CEDGNKLFSGA 269 (406)
T ss_pred cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccC---------CCeeeEEe--ccCcCeecccc
Confidence 112246789999999 55689999999999999988888888887766 67999999 89999999987
Q ss_pred C-CCcEEEEECCCCCcceEEEeecCC-CeEEE--EecCCCCEEEEEeCCCcEEEEEccC-CeEEeeeeCCCCCCeEEEEe
Q 014154 235 N-DHQVRLYDTSAQRRPVMSFDFRET-PIKAV--AEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 235 ~-dg~i~iwd~~~~~~~~~~~~~~~~-~i~~~--~~sp~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~ 309 (430)
. |-.|..||++....++..+..|.. .-..| ...|++++|++|+.||.|++||+.. +..+..+..+ ...++.+++
T Consensus 270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~-sd~vNgvsl 348 (406)
T KOG2919|consen 270 RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY-SDTVNGVSL 348 (406)
T ss_pred cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc-cccccceec
Confidence 5 678999999988888888888755 22233 4478999999999999999999998 6767777777 889999999
Q ss_pred cCCCCeEEEEeCC
Q 014154 310 HPTLPIIASCGLD 322 (430)
Q Consensus 310 ~~~~~~l~s~~~d 322 (430)
+|--+++++++..
T Consensus 349 nP~mpilatssGq 361 (406)
T KOG2919|consen 349 NPIMPILATSSGQ 361 (406)
T ss_pred CcccceeeeccCc
Confidence 9999999988754
No 173
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=1.6e-17 Score=141.62 Aligned_cols=298 Identities=12% Similarity=0.068 Sum_probs=200.1
Q ss_pred ceeeecCCCceEEEEccCCCCC----cceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc----
Q 014154 16 RALTFDSLGLIKVIEARGEHGG----VPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL---- 87 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~---- 87 (430)
+++||+.|..|++|.+..+..+ .-+.+..+..|...++++.| +|+|++||+|+.+|.|.+|-...-..
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf----~p~gelLASg~D~g~v~lWk~~~~~~~~~d 103 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRF----SPDGELLASGGDGGEVFLWKQGDVRIFDAD 103 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEE----cCCcCeeeecCCCceEEEEEecCcCCcccc
Confidence 8999999999999988764321 33456778889999877766 56888999999999999997652111
Q ss_pred --cceeeccCC--CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCC
Q 014154 88 --RVAISNAGD--SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG 163 (430)
Q Consensus 88 --~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~ 163 (430)
....+..+- .....+.+.+..+.|.+.. ..+++++.+..+.+|++.... .+.+.+ .|..
T Consensus 104 ~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~--------~~l~s~s~dns~~l~Dv~~G~--------l~~~~~-dh~~ 166 (434)
T KOG1009|consen 104 TEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS--------NFLVSGSVDNSVRLWDVHAGQ--------LLAILD-DHEH 166 (434)
T ss_pred chhhhCccceEEEEEecccccchhhhhccCCC--------ceeeeeeccceEEEEEeccce--------eEeecc-cccc
Confidence 000000000 0011234455555555544 378888888888888886543 333333 5778
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeC----------CCCCCCCCCcCC----cceeEEEEeecCCCCE
Q 014154 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK----------PPPKNSLGIFTP----TWFTSAAFLSIDDHRK 229 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~----------~~~~~~~~~~~~----~~v~~~~~~~~~~~~~ 229 (430)
.+..++|.|.++++++-+.|...+.+.+...+.+.... ......+.+.|. .....++| +|+|.+
T Consensus 167 yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf--TPdG~l 244 (434)
T KOG1009|consen 167 YVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF--TPDGSL 244 (434)
T ss_pred ccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc--CCCCcE
Confidence 89999999999999999988877777765433322211 111122223332 34566788 899999
Q ss_pred EEEEeC----CC-----cEEEEECCCCCcceEEEeecCCCeEEEEecCC-----------------CCEEEEEeCCCcEE
Q 014154 230 FVAGTN----DH-----QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-----------------SFNIYIGNGSGDLA 283 (430)
Q Consensus 230 l~s~~~----dg-----~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~-----------------~~~l~~~~~d~~i~ 283 (430)
|++... .+ ..++|+-..-.+|...+++...+...+.|+|- -+.+++....+.|+
T Consensus 245 lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svy 324 (434)
T KOG1009|consen 245 LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVY 324 (434)
T ss_pred EEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEE
Confidence 887532 22 33555554445566777766666666666651 12334444566799
Q ss_pred EEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCcee
Q 014154 284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (430)
Q Consensus 284 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 336 (430)
+||.++..++.....-|-..|+.++|+++|..|+..|.||...+..++.+++-
T Consensus 325 vydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 325 VYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred EeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 99999988888877666889999999999999999999999888877765543
No 174
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.6e-18 Score=153.59 Aligned_cols=246 Identities=17% Similarity=0.191 Sum_probs=173.8
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe-eCC
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKP 202 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~ 202 (430)
..+++++.+|.+.+|.+...+......-.+|..|+ .|.++|.|+++.+++..+++|+.||+|+.|++....--.. ...
T Consensus 307 p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp 385 (577)
T KOG0642|consen 307 PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDP 385 (577)
T ss_pred CeEEEeccccchhhhhhcccCCccccceeeeEEEe-cccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCc
Confidence 48999999999999999554433334455777777 7899999999999999999999999999997752111100 000
Q ss_pred CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeec--CCCeEEEEecCCC-CEEEEEeCC
Q 014154 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDS-FNIYIGNGS 279 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~sp~~-~~l~~~~~d 279 (430)
......-..|.+.|..+++ ++....|++++.||++++|+..... + .++... .+.-.++.+-... ...++...-
T Consensus 386 ~vl~~~l~Ghtdavw~l~~--s~~~~~Llscs~DgTvr~w~~~~~~-~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~ 461 (577)
T KOG0642|consen 386 SVLSGTLLGHTDAVWLLAL--SSTKDRLLSCSSDGTVRLWEPTEES-P-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRF 461 (577)
T ss_pred chhccceeccccceeeeee--cccccceeeecCCceEEeeccCCcC-c-cccCCccccCCcceEeeccchhHhhhhhccc
Confidence 0011111224477889999 6777789999999999999988644 3 233221 1233455553322 233333333
Q ss_pred CcEEEEEccCCeEEeeeeCC------CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeee
Q 014154 280 GDLASVDIRTGKLLGCFIGK------CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSA 353 (430)
Q Consensus 280 ~~i~iwd~~~~~~~~~~~~~------~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 353 (430)
+.--++++...+.+..+... ....+..+.++|.+.+.+++..|+.|+++|..++.+++. ...|. ..+++++
T Consensus 462 ~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s--~~a~~-~svtsla 538 (577)
T KOG0642|consen 462 GYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS--MVAHK-DSVTSLA 538 (577)
T ss_pred ccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh--eeecc-ceeccee
Confidence 44445555555544444321 023577889999999999999999999999999999988 55674 4469999
Q ss_pred ccccccc-cccCCCCceEecCCCCC
Q 014154 354 FADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 354 ~s~~g~~-~~~~~d~~i~~~~~~~~ 377 (430)
+.|+|.+ ++++.|+.+++|..+..
T Consensus 539 i~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 539 IDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ecCCCceEEeecCCceeehhhccch
Confidence 9999999 99999999999998664
No 175
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=5.9e-17 Score=129.05 Aligned_cols=238 Identities=14% Similarity=0.168 Sum_probs=172.0
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEee-ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC------ee
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC------EK 196 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~------~~ 196 (430)
..++++...|.+.+.++..-..-+.-..+...+.. -.|.++|..++|+ ..+|++|+. |.|+-|..+.. +.
T Consensus 23 ~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~ 99 (325)
T KOG0649|consen 23 QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKR 99 (325)
T ss_pred eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchh
Confidence 57888999999999998644332223334444444 5788999999998 556766664 99999987542 22
Q ss_pred eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEE
Q 014154 197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG 276 (430)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~ 276 (430)
+++.+.+... +......|+++.. .|..+-++.++.|+.++-||+.+++ ..+.+.+|+..|.++.--.....+++|
T Consensus 100 lwe~~~P~~~--~~~evPeINam~l--dP~enSi~~AgGD~~~y~~dlE~G~-i~r~~rGHtDYvH~vv~R~~~~qilsG 174 (325)
T KOG0649|consen 100 LWEVKIPMQV--DAVEVPEINAMWL--DPSENSILFAGGDGVIYQVDLEDGR-IQREYRGHTDYVHSVVGRNANGQILSG 174 (325)
T ss_pred hhhhcCcccc--CcccCCccceeEe--ccCCCcEEEecCCeEEEEEEecCCE-EEEEEcCCcceeeeeeecccCcceeec
Confidence 3333332211 1111245778877 6777777777899999999999976 588999999999999885556689999
Q ss_pred eCCCcEEEEEccCCeEEeeeeCC---------CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccc
Q 014154 277 NGSGDLASVDIRTGKLLGCFIGK---------CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE 347 (430)
Q Consensus 277 ~~d~~i~iwd~~~~~~~~~~~~~---------~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 347 (430)
++||++|+||+++++++..+... ....|-+++- +..+|++|+. -.+.+|++++.++...+.++++
T Consensus 175 ~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfpipa~--- 248 (325)
T KOG0649|consen 175 AEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFPIPAR--- 248 (325)
T ss_pred CCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEecccc---
Confidence 99999999999999988776532 2334555555 6668888764 4699999999999999887777
Q ss_pred eEEeeeccccccccccCCCCceEecCCCCC
Q 014154 348 VVFDSAFADKEVANAAADAPMLEIQNGNDT 377 (430)
Q Consensus 348 ~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~ 377 (430)
+-.+.|- +...++++..+.+.-|..+..
T Consensus 249 -v~~v~F~-~d~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 249 -VHLVDFV-DDCVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred -eeEeeee-cceEEEeccccceeeeeeccE
Confidence 4556664 344577777788888877654
No 176
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.79 E-value=1.6e-15 Score=128.03 Aligned_cols=159 Identities=17% Similarity=0.239 Sum_probs=127.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEE--eCCCcE
Q 014154 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG--TNDHQV 239 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~dg~i 239 (430)
...|.++.++ .+.|+++-.+ .|+|||+++.+.+.++.....+. ..+.++.+ ++.+.+|+.- ...|.|
T Consensus 87 pt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~------~gl~AlS~--n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 87 PTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNP------KGLCALSP--NNANCYLAYPGSTTSGDV 155 (391)
T ss_pred CCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCc------cceEeecc--CCCCceEEecCCCCCceE
Confidence 4567777774 5667766666 59999999999888876643221 22444444 6666677763 347899
Q ss_pred EEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCc-EEEEEccCCeEEeeeeCC-CCCCeEEEEecCCCCeEE
Q 014154 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-LASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~ 317 (430)
.|||+.+-+ ++..+..|.+++.+++|+++|.+||+++..|+ ||+|.+.+|+.+++|+-. ....|++++|+|++++|+
T Consensus 156 ~l~d~~nl~-~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~ 234 (391)
T KOG2110|consen 156 VLFDTINLQ-PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLA 234 (391)
T ss_pred EEEEcccce-eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEE
Confidence 999999854 68899999999999999999999999999987 789999999999999743 235789999999999999
Q ss_pred EEeCCCcEEEEECCC
Q 014154 318 SCGLDSYLRFWDIKT 332 (430)
Q Consensus 318 s~~~dg~i~iwd~~~ 332 (430)
+.|..++|.||.+..
T Consensus 235 ~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 235 ASSNTETVHIFKLEK 249 (391)
T ss_pred EecCCCeEEEEEecc
Confidence 999999999998853
No 177
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=1.2e-17 Score=136.17 Aligned_cols=213 Identities=14% Similarity=0.184 Sum_probs=153.2
Q ss_pred CCCceEEEEEcCC-CCEEEEEeCC-------CeEEEEECCCCeeeEeeC-CCCCCCCCCcCCcceeEEEEeecCCCCEEE
Q 014154 161 ASGTIAFSKVDIS-EKFSLFGGKG-------VEVNVWDLDKCEKIWTAK-PPPKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (430)
Q Consensus 161 ~~~~i~~~~~~~~-~~~l~~~~~d-------~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 231 (430)
+.+.|+.++-+|- ...|+++..+ -.+.||.+.......... ......+...+...|.|+.| .|++..++
T Consensus 62 ~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew--~Pns~kla 139 (370)
T KOG1007|consen 62 HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEW--EPNSDKLA 139 (370)
T ss_pred CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEE--cCCCCeeE
Confidence 4578999999994 4555554432 236789886432210000 00111122223357899999 78888888
Q ss_pred EEeCCCcEEEEECCCCCcceEEEee-----cCCCeEEEEecC--CCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCe
Q 014154 232 AGTNDHQVRLYDTSAQRRPVMSFDF-----RETPIKAVAEEP--DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSI 304 (430)
Q Consensus 232 s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~i~~~~~sp--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v 304 (430)
+-. |..|.+|++......+..+.. +....++-+|+| +++.+++. .|+++..||+|+.++...+...|...|
T Consensus 140 sm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~v 217 (370)
T KOG1007|consen 140 SMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRV 217 (370)
T ss_pred Eec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhccee
Confidence 754 889999999986653433322 345677888988 67777765 689999999999988888776558899
Q ss_pred EEEEecCCCC-eEEEEeCCCcEEEEECCC-CceeeEEEeeccccceEEeeecccccc-c-cccCCCCceEecCCCCCccc
Q 014154 305 RSIARHPTLP-IIASCGLDSYLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFADKEV-A-NAAADAPMLEIQNGNDTQED 380 (430)
Q Consensus 305 ~~i~~~~~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~-~-~~~~~d~~i~~~~~~~~~~~ 380 (430)
..+.|+|+.+ +|++|+.||.|+|||++. ..++.. +.+| ...++++.|+|... + ++++.|..|.+|.......+
T Consensus 218 rdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e--l~~H-sHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE 294 (370)
T KOG1007|consen 218 RDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE--LPGH-SHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSE 294 (370)
T ss_pred eeccCCCCceEEEEEcCCCccEEEEeccCCCccccc--cCCC-ceEEEEEEecCccceEEEecCCCceeEEEeccccccc
Confidence 9999999875 689999999999999985 345555 7788 78899999999644 3 99999999999988765433
No 178
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.78 E-value=1.8e-16 Score=147.30 Aligned_cols=285 Identities=13% Similarity=0.085 Sum_probs=190.2
Q ss_pred CceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccc--ceeeccCCCCCCC
Q 014154 24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR--VAISNAGDSGAQP 101 (430)
Q Consensus 24 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~ 101 (430)
+.+.||++... ..++.... ....+.++.|+.. +..+||.|..+|.|.+||+..+... ..+. .....
T Consensus 222 ~~~~vW~~~~p--~~Pe~~~~---~~s~v~~~~f~p~---~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls----~~~~s 289 (555)
T KOG1587|consen 222 GVLLVWSLKNP--NTPELVLE---SPSEVTCLKFCPF---DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS----ALEVS 289 (555)
T ss_pred ceEEEEecCCC--CCceEEEe---cCCceeEEEeccC---CcceEEeeccCceEEEEEccCCCCCCCcccc----ccccc
Confidence 47999999984 33333322 2355556666652 2357888999999999999866542 1111 11235
Q ss_pred CCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEE---eeecCCCceEEEEEcC-CCCEE
Q 014154 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS---WNVCASGTIAFSKVDI-SEKFS 177 (430)
Q Consensus 102 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~---~~~~~~~~i~~~~~~~-~~~~l 177 (430)
|..++..+.|...... ..+++++.||.+..|++..-....-........ -.......+++++|.+ +.+.+
T Consensus 290 h~~~v~~vvW~~~~~~------~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~F 363 (555)
T KOG1587|consen 290 HSEPVTAVVWLQNEHN------TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHF 363 (555)
T ss_pred CCcCeEEEEEeccCCC------CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceE
Confidence 6678887777665431 368899999999999765332200000000000 0011234688899988 56778
Q ss_pred EEEeCCCeEEEEECCCCeee--EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe
Q 014154 178 LFGGKGVEVNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD 255 (430)
Q Consensus 178 ~~~~~d~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 255 (430)
++|+.+|.|.--+....+.. ..++.+. ....|.+.|.++.+ +|=+..++..+.|.+|+||.......|+..+.
T Consensus 364 iVGTe~G~v~~~~r~g~~~~~~~~~~~~~---~~~~h~g~v~~v~~--nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~ 438 (555)
T KOG1587|consen 364 IVGTEEGKVYKGCRKGYTPAPEVSYKGHS---TFITHIGPVYAVSR--NPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD 438 (555)
T ss_pred EEEcCCcEEEEEeccCCcccccccccccc---cccccCcceEeeec--CCCccceeeeeccceeEeccccCCCCcchhhh
Confidence 89999999887443222111 1122221 22334588999999 67666555555599999999884466788888
Q ss_pred ecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCe--EEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154 256 FRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGK--LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 256 ~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~ 332 (430)
.+...+++++|||.. ..|+++..||.|.+||+.... ++.....+ ....+.+.|+++|++|++|...|.+.+|++..
T Consensus 439 ~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 439 SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred hccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 888889999999976 566778889999999997543 34444444 55677888999999999999999999999863
No 179
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=5.7e-15 Score=138.82 Aligned_cols=294 Identities=20% Similarity=0.285 Sum_probs=209.3
Q ss_pred cCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc-ccceeeccCCCCCCCCCCceEEEEEeecCcccccccC
Q 014154 45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (430)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 123 (430)
+..|... +....+ .+.+..++.++.|+.+.+|+...+. ....+..... ..+..+.+. .... .
T Consensus 61 ~~~~~~~--i~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~-----~ 123 (466)
T COG2319 61 LRGHEDS--ITSIAF--SPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-------SSVSKLALS-SPDG-----N 123 (466)
T ss_pred eeeccce--EEEEEE--CCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-------CceeeEEEE-CCCc-----c
Confidence 3445555 444444 6667788989899999999998776 4444443111 234444442 2110 0
Q ss_pred ceEEEEcc-CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEeeC
Q 014154 124 RTLLTCTT-KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAK 201 (430)
Q Consensus 124 ~~~~~~~~-~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~ 201 (430)
..++..+. ++.+.+|++... .........|...|..++|+|++..+++++. ++.+++|++..+..+..+.
T Consensus 124 ~~~~~~~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (466)
T COG2319 124 SILLASSSLDGTVKLWDLSTP--------GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA 195 (466)
T ss_pred eEEeccCCCCccEEEEEecCC--------CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec
Confidence 13444344 788999987630 1222333366788999999999998888885 9999999999877777766
Q ss_pred CCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEEEEECCCCCcceE-EEeecCCCeEEEEecCCCCEEEEEeCC
Q 014154 202 PPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVM-SFDFRETPIKAVAEEPDSFNIYIGNGS 279 (430)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~d 279 (430)
.+. ..+.+++| .|++. .+++++.|+.|++||...+.. .. .+..|.... ...|+|++.++++++.|
T Consensus 196 ~~~---------~~v~~~~~--~~~~~~~~~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d 262 (466)
T COG2319 196 GHT---------DPVSSLAF--SPDGGLLIASGSSDGTIRLWDLSTGKL-LRSTLSGHSDSV-VSSFSPDGSLLASGSSD 262 (466)
T ss_pred cCC---------CceEEEEE--cCCcceEEEEecCCCcEEEEECCCCcE-EeeecCCCCcce-eEeECCCCCEEEEecCC
Confidence 643 77999999 68887 555559999999999886443 44 577787665 33899999899999999
Q ss_pred CcEEEEEccCCeE-EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccc
Q 014154 280 GDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE 358 (430)
Q Consensus 280 ~~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 358 (430)
+.+++||++.... +..+.+| ...+.++.|+|++..+++++.|+.+.+|+..+...........|.. .+..+.|.+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 340 (466)
T COG2319 263 GTIRLWDLRSSSSLLRTLSGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG-PVSSLSFSPDG 340 (466)
T ss_pred CcEEEeeecCCCcEEEEEecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC-ceEEEEECCCC
Confidence 9999999987664 4455566 8899999999988888889999999999998887776643234533 56888884332
Q ss_pred c-cccc-CCCCceEecCCCCCc
Q 014154 359 V-ANAA-ADAPMLEIQNGNDTQ 378 (430)
Q Consensus 359 ~-~~~~-~~d~~i~~~~~~~~~ 378 (430)
. ++.+ ..|+.+.+|+.....
T Consensus 341 ~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 341 SLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CEEEEeecCCCcEEeeecCCCc
Confidence 3 3333 677899999887754
No 180
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.77 E-value=1.3e-16 Score=130.26 Aligned_cols=289 Identities=15% Similarity=0.119 Sum_probs=186.3
Q ss_pred eeeeeecCCCCC-ceeEEee----cCCeEEEecCC--CCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceE
Q 014154 54 VLAASIDDSQND-PLLAVAR----KNGLTDILNPL--NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (430)
Q Consensus 54 ~~~~~~~~~p~g-~~l~~g~----~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 126 (430)
..++.|...|+. .+||.|+ ..+.|.|..+. +++.+..- ...+.-+.+.+.|.+....- . ..+
T Consensus 47 lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a-------~fd~~YP~tK~~wiPd~~g~---~-pdl 115 (364)
T KOG0290|consen 47 LYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDA-------NFDHPYPVTKLMWIPDSKGV---Y-PDL 115 (364)
T ss_pred eeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccC-------CCCCCCCccceEecCCcccc---C-cch
Confidence 334444334443 3688887 34567776554 22221111 11234466677777765311 1 122
Q ss_pred EEEccCCeeEEEEeeecCccccCCCcceEE---e----eecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCee--
Q 014154 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKS---W----NVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEK-- 196 (430)
Q Consensus 127 ~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~---~----~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~-- 196 (430)
.++.+..+++|.+.+... .+.. . +..+..++++..|+. +.++|.+++-|-+..|||++++..
T Consensus 116 -LATs~D~LRlWri~~ee~-------~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~ 187 (364)
T KOG0290|consen 116 -LATSSDFLRLWRIGDEES-------RVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT 187 (364)
T ss_pred -hhcccCeEEEEeccCcCC-------ceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccc
Confidence 344556799999875322 1110 0 123456888898987 678999999999999999998622
Q ss_pred -eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeec--CCCeEEEEecCCC-CE
Q 014154 197 -IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDS-FN 272 (430)
Q Consensus 197 -~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~sp~~-~~ 272 (430)
...+..|. ..|..++|. ...-+.+++.+.||+|++||++........++.. ..+...++|+++. ++
T Consensus 188 vkTQLIAHD---------KEV~DIaf~-~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpny 257 (364)
T KOG0290|consen 188 VKTQLIAHD---------KEVYDIAFL-KGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNY 257 (364)
T ss_pred eeeEEEecC---------cceeEEEec-cCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchH
Confidence 23334443 679999994 2234589999999999999999855433333332 3577888998755 67
Q ss_pred EEEEeCC-CcEEEEEccCC-eEEeeeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEEEECCCCce--eeEEEeeccccc
Q 014154 273 IYIGNGS-GDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQL--LSAVFLKQHLNE 347 (430)
Q Consensus 273 l~~~~~d-~~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~ 347 (430)
+++-..| ..|.|.|+|.. .++.++++| .+.|++|+|.|.. ..|.++|.|..+.|||+...-. +..-.+.-...+
T Consensus 258 mATf~~dS~~V~iLDiR~P~tpva~L~~H-~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~ 336 (364)
T KOG0290|consen 258 MATFAMDSNKVVILDIRVPCTPVARLRNH-QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGG 336 (364)
T ss_pred HhhhhcCCceEEEEEecCCCcceehhhcC-cccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccc
Confidence 7766554 67999999964 568899998 9999999999965 6899999999999999975322 110001111245
Q ss_pred eEEeeecccccc-ccccCCCCceEec
Q 014154 348 VVFDSAFADKEV-ANAAADAPMLEIQ 372 (430)
Q Consensus 348 ~v~~~~~s~~g~-~~~~~~d~~i~~~ 372 (430)
.|..+.|++... .++...++.+.+.
T Consensus 337 EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 337 EVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred eeeeeeecccCCCEEEEEecCeeeEE
Confidence 579999996543 3555555555543
No 181
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=3.4e-15 Score=135.29 Aligned_cols=280 Identities=10% Similarity=0.090 Sum_probs=168.0
Q ss_pred eeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEee-cCCeEEEecCC-CCcccceeecc
Q 014154 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPL-NGDLRVAISNA 94 (430)
Q Consensus 17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~-~dg~i~iwd~~-~~~~~~~~~~~ 94 (430)
.++...++.|.+|++... +...++..+... +....+ .+ +|++++|++++ .++.|.+|++. ++.. .....+
T Consensus 5 y~~~~~~~~I~~~~~~~~--g~l~~~~~~~~~-~~~~~l--~~--spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~ 76 (330)
T PRK11028 5 YIASPESQQIHVWNLNHE--GALTLLQVVDVP-GQVQPM--VI--SPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAES 76 (330)
T ss_pred EEEcCCCCCEEEEEECCC--CceeeeeEEecC-CCCccE--EE--CCCCCEEEEEECCCCcEEEEEECCCCce-EEeeee
Confidence 345577899999999642 233355555432 222233 44 67888887754 57889999986 3332 111111
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEE-ccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~ 173 (430)
+ .......+.+.+.. ..++++ ..++.+.+|++..... ....+. ..........++++|+
T Consensus 77 -~-----~~~~p~~i~~~~~g--------~~l~v~~~~~~~v~v~~~~~~g~----~~~~~~--~~~~~~~~~~~~~~p~ 136 (330)
T PRK11028 77 -P-----LPGSPTHISTDHQG--------RFLFSASYNANCVSVSPLDKDGI----PVAPIQ--IIEGLEGCHSANIDPD 136 (330)
T ss_pred -c-----CCCCceEEEECCCC--------CEEEEEEcCCCeEEEEEECCCCC----CCCcee--eccCCCcccEeEeCCC
Confidence 0 01123344444333 244444 4578899998752211 001111 1122345677899999
Q ss_pred CCEEEEEe-CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-CCcEEEEECCCC--C-
Q 014154 174 EKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQ--R- 248 (430)
Q Consensus 174 ~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~--~- 248 (430)
+++++++. .++.|.+||+.+...+........ ..........++| +|++++++++.. ++.|.+|++... .
T Consensus 137 g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~---~~~~g~~p~~~~~--~pdg~~lyv~~~~~~~v~v~~~~~~~~~~ 211 (330)
T PRK11028 137 NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEV---TTVEGAGPRHMVF--HPNQQYAYCVNELNSSVDVWQLKDPHGEI 211 (330)
T ss_pred CCEEEEeeCCCCEEEEEEECCCCcccccCCCce---ecCCCCCCceEEE--CCCCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence 99887655 568999999976332211000000 0000133567899 899999988876 899999999742 1
Q ss_pred cceEEEeec------CCCeEEEEecCCCCEEEEEeC-CCcEEEEEccCCe----EEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154 249 RPVMSFDFR------ETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGK----LLGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 249 ~~~~~~~~~------~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~ 317 (430)
..+..+..+ ......+.++|++++|+++.. ++.|.+|++.... .+..... ......+.|+|+|++|+
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~ 289 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLI 289 (330)
T ss_pred EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEE
Confidence 122333221 112336889999999999864 6899999986433 2222222 22456889999999998
Q ss_pred EEeC-CCcEEEEECC
Q 014154 318 SCGL-DSYLRFWDIK 331 (430)
Q Consensus 318 s~~~-dg~i~iwd~~ 331 (430)
++.. +++|.+|++.
T Consensus 290 va~~~~~~v~v~~~~ 304 (330)
T PRK11028 290 AAGQKSHHISVYEID 304 (330)
T ss_pred EEEccCCcEEEEEEc
Confidence 8775 8999999874
No 182
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=2.2e-15 Score=136.58 Aligned_cols=276 Identities=11% Similarity=0.032 Sum_probs=164.7
Q ss_pred EEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEE-EccCCeeEEEEeeecCccc
Q 014154 69 AVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT-CTTKGKASMRSIEVTKVSA 147 (430)
Q Consensus 69 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~ 147 (430)
++...++.|.+|++.+...+..++... .......+.+.+.. ..+++ +..++.+.+|++..
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~------~~~~~~~l~~spd~--------~~lyv~~~~~~~i~~~~~~~----- 66 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD------VPGQVQPMVISPDK--------RHLYVGVRPEFRVLSYRIAD----- 66 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe------cCCCCccEEECCCC--------CEEEEEECCCCcEEEEEECC-----
Confidence 334678999999996432222222110 00122234333322 24433 34567788887751
Q ss_pred cCCCcceEEee-ecCCCceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeee-EeeCCCCCCCCCCcCCcceeEEEEeec
Q 014154 148 ESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKI-WTAKPPPKNSLGIFTPTWFTSAAFLSI 224 (430)
Q Consensus 148 ~~~~~~i~~~~-~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~ 224 (430)
++.+.... .........++++|++++|++++. ++.|.+|++++...+ ....... ....+..+++ +
T Consensus 67 ---~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-------~~~~~~~~~~--~ 134 (330)
T PRK11028 67 ---DGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-------GLEGCHSANI--D 134 (330)
T ss_pred ---CCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-------CCCcccEeEe--C
Confidence 11222111 122345678999999999988764 789999999642211 1111000 0123566778 8
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCCCcce------EEEeecCCCeEEEEecCCCCEEEEEeC-CCcEEEEEccC--C--eE
Q 014154 225 DDHRKFVAGT-NDHQVRLYDTSAQRRPV------MSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRT--G--KL 292 (430)
Q Consensus 225 ~~~~~l~s~~-~dg~i~iwd~~~~~~~~------~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~--~--~~ 292 (430)
|+++++++++ .++.|.+||+.+..... .... .......++|+|++++++++.. ++.|.+||+.. + +.
T Consensus 135 p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 135 PDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC 213 (330)
T ss_pred CCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence 8998886554 56899999998633211 1111 1244678999999999988876 89999999973 3 23
Q ss_pred EeeeeCC-----CCCCeEEEEecCCCCeEEEEe-CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-c-ccC
Q 014154 293 LGCFIGK-----CSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-N-AAA 364 (430)
Q Consensus 293 ~~~~~~~-----~~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~-~~~ 364 (430)
+..+... .......+.|+|++++|+++. .++.|.+|++.......++.-..........++|+|||++ + +..
T Consensus 214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc
Confidence 4443321 011234688999999998885 4789999998653321111010011122367899999998 3 344
Q ss_pred CCCceEecCCCC
Q 014154 365 DAPMLEIQNGND 376 (430)
Q Consensus 365 ~d~~i~~~~~~~ 376 (430)
.++.|.+|+.+.
T Consensus 294 ~~~~v~v~~~~~ 305 (330)
T PRK11028 294 KSHHISVYEIDG 305 (330)
T ss_pred cCCcEEEEEEcC
Confidence 589999998764
No 183
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.77 E-value=1.4e-16 Score=148.07 Aligned_cols=280 Identities=14% Similarity=0.096 Sum_probs=196.1
Q ss_pred CeEEEecCCCC-cccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcc
Q 014154 75 GLTDILNPLNG-DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST 153 (430)
Q Consensus 75 g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~ 153 (430)
+.+.||++.+. .+...+.. ...+.++.+.+.+. ..++.|..+|.+.+|++....... --.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~---------~s~v~~~~f~p~~p-------~ll~gG~y~GqV~lWD~~~~~~~~---~s~ 282 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLES---------PSEVTCLKFCPFDP-------NLLAGGCYNGQVVLWDLRKGSDTP---PSG 282 (555)
T ss_pred ceEEEEecCCCCCceEEEec---------CCceeEEEeccCCc-------ceEEeeccCceEEEEEccCCCCCC---Ccc
Confidence 47999999765 33333322 24677777777766 789999999999999987654310 112
Q ss_pred eEEeeecCCCceEEEEEcCCC--CEEEEEeCCCeEEEEECCCCeee---EeeCCCCCCCCCCcCCcceeEEEEeecCCCC
Q 014154 154 VKSWNVCASGTIAFSKVDISE--KFSLFGGKGVEVNVWDLDKCEKI---WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR 228 (430)
Q Consensus 154 i~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 228 (430)
+..-...|..++..+.|..+. .-+++++.||.|..|+++.-... ..................+++++|. ..+..
T Consensus 283 ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~-~~~p~ 361 (555)
T KOG1587|consen 283 LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFE-PTDPN 361 (555)
T ss_pred cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeec-cCCCc
Confidence 334445677888888886644 44999999999999988643221 1111111001111223568899996 44667
Q ss_pred EEEEEeCCCcEEEEE---CCCCC----cceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEcc-CCeEEeeeeCCC
Q 014154 229 KFVAGTNDHQVRLYD---TSAQR----RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKC 300 (430)
Q Consensus 229 ~l~s~~~dg~i~iwd---~~~~~----~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~ 300 (430)
.+++|+.+|.|.--+ .+... +++..+..|.++|+++.++|=+..++..+.|.+++||... ...++..+..+
T Consensus 362 ~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~- 440 (555)
T KOG1587|consen 362 HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS- 440 (555)
T ss_pred eEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc-
Confidence 899999999988733 33222 2244566688999999999988766666669999999987 67777777776
Q ss_pred CCCeEEEEecCCCC-eEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 301 SGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 301 ~~~v~~i~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
...|++++|||... .++++..||.|.|||+............-. ......+.|+++|+. ++|...|.+++|+...
T Consensus 441 ~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 441 PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 67799999999874 567778899999999975443332223233 455688899999999 8899999999999864
No 184
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=1.5e-16 Score=135.64 Aligned_cols=151 Identities=16% Similarity=0.178 Sum_probs=117.8
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEee--ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe------
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE------ 195 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~------ 195 (430)
+.+++++.|..+++|.+..+....+ +..|.... ..|...|+++.|+|+|+.|++|+.+|.|.+|-...-.
T Consensus 27 ~~laT~G~D~~iriW~v~r~~~~~~--~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~ 104 (434)
T KOG1009|consen 27 NKLATAGGDKDIRIWKVNRSEPGGG--DMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADT 104 (434)
T ss_pred cceecccCccceeeeeeeecCCCCC--ceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccc
Confidence 5899999999999999987764221 12232221 1467899999999999999999999999999876210
Q ss_pred ----------eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEE
Q 014154 196 ----------KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVA 265 (430)
Q Consensus 196 ----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~ 265 (430)
....+.. |...|..++| +|++.++++++.|..+++||+..+. ....+..|...+..++
T Consensus 105 e~~~~ke~w~v~k~lr~---------h~~diydL~W--s~d~~~l~s~s~dns~~l~Dv~~G~-l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 105 EADLNKEKWVVKKVLRG---------HRDDIYDLAW--SPDSNFLVSGSVDNSVRLWDVHAGQ-LLAILDDHEHYVQGVA 172 (434)
T ss_pred hhhhCccceEEEEEecc---------cccchhhhhc--cCCCceeeeeeccceEEEEEeccce-eEeeccccccccceee
Confidence 0111222 3366888999 8999999999999999999999976 4788888999999999
Q ss_pred ecCCCCEEEEEeCCCcEEEEEcc
Q 014154 266 EEPDSFNIYIGNGSGDLASVDIR 288 (430)
Q Consensus 266 ~sp~~~~l~~~~~d~~i~iwd~~ 288 (430)
|.|-++++++-+.|...+.+++.
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred cchhhhhhhhhccCcccceeeee
Confidence 99998898888888766666554
No 185
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.77 E-value=1.4e-16 Score=144.02 Aligned_cols=260 Identities=11% Similarity=0.104 Sum_probs=187.9
Q ss_pred CCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCC
Q 014154 22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP 101 (430)
Q Consensus 22 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 101 (430)
.+..+.+||...| .+++++.+|.+.|++++++. ||+++|+|+.|..|.+|+..- ...++. .
T Consensus 31 Ag~rlliyD~ndG-----~llqtLKgHKDtVycVAys~----dGkrFASG~aDK~VI~W~~kl---EG~LkY-------S 91 (1081)
T KOG1538|consen 31 AGSRLLVYDTSDG-----TLLQPLKGHKDTVYCVAYAK----DGKRFASGSADKSVIIWTSKL---EGILKY-------S 91 (1081)
T ss_pred cCCEEEEEeCCCc-----ccccccccccceEEEEEEcc----CCceeccCCCceeEEEecccc---cceeee-------c
Confidence 4468999999998 88999999999988888765 788999999999999997542 222221 3
Q ss_pred CCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEe
Q 014154 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG 181 (430)
Q Consensus 102 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~ 181 (430)
|.+.|.++.+.+... .+++|+.. ..-+|+.+. ..+.-+ .....+.+.+|..+|++++.|-
T Consensus 92 H~D~IQCMsFNP~~h--------~LasCsLs-dFglWS~~q---------K~V~K~--kss~R~~~CsWtnDGqylalG~ 151 (1081)
T KOG1538|consen 92 HNDAIQCMSFNPITH--------QLASCSLS-DFGLWSPEQ---------KSVSKH--KSSSRIICCSWTNDGQYLALGM 151 (1081)
T ss_pred cCCeeeEeecCchHH--------Hhhhcchh-hccccChhh---------hhHHhh--hhheeEEEeeecCCCcEEEEec
Confidence 557888887766654 56665543 233454321 111111 2246788999999999999999
Q ss_pred CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCC---CCEEEEEeCCCcEEEEECCCCCcceEEEeecC
Q 014154 182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD---HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE 258 (430)
Q Consensus 182 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 258 (430)
.+|+|.+-+-. ++....+..+.+ ..++|.+++|.++.. ...+++.....++.+|.+.. +. +..-..-+
T Consensus 152 ~nGTIsiRNk~-gEek~~I~Rpgg------~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~-Igk~r~L~ 222 (1081)
T KOG1538|consen 152 FNGTISIRNKN-GEEKVKIERPGG------SNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQ-IGKDRALN 222 (1081)
T ss_pred cCceEEeecCC-CCcceEEeCCCC------CCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-ee-ecccccCC
Confidence 99999988653 333323322211 127799999953221 24677777778888887764 21 22222223
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 259 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
....|+.+-|+|.+++.|+.|+.+.+|- +.|-.+.++-.. ..+|+.++..|++++++.|+.||+|-.|++-
T Consensus 223 FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~-D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 223 FDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQ-DSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred CCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeecccc-ceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 4567899999999999999999999996 577777777765 7899999999999999999999999999874
No 186
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=2.6e-17 Score=132.55 Aligned_cols=237 Identities=15% Similarity=0.113 Sum_probs=166.6
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--------
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-------- 195 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-------- 195 (430)
++++++...|.+.+|.+.... .+..|+..+...|+.+..-|+ ..|.+-+.|..+.+|++.-+.
T Consensus 26 ~rL~sg~~~G~V~~w~lqt~r--------~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~ 96 (323)
T KOG0322|consen 26 ERLMSGLSVGIVKMWVLQTER--------DLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIV 96 (323)
T ss_pred hhhhcccccceEEEEEeecCc--------cchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeee
Confidence 478899999999999987554 455666566677777777776 566677778888888775421
Q ss_pred ------eeEeeCCCCCCC----------------C--------------CCcCCcceeEEEEeecCCC--CEEEEEeCCC
Q 014154 196 ------KIWTAKPPPKNS----------------L--------------GIFTPTWFTSAAFLSIDDH--RKFVAGTNDH 237 (430)
Q Consensus 196 ------~~~~~~~~~~~~----------------~--------------~~~~~~~v~~~~~~~~~~~--~~l~s~~~dg 237 (430)
+...+....... . .....+.+++..+- ..++ -+++.|.++|
T Consensus 97 ~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~-~~c~s~~lllaGyEsg 175 (323)
T KOG0322|consen 97 VNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD-HACGSTFLLLAGYESG 175 (323)
T ss_pred ccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc-ccccceEEEEEeccCC
Confidence 111110000000 0 00011335555431 1222 2577888999
Q ss_pred cEEEEECCCCCc---------ceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC--eE--EeeeeCCCCCCe
Q 014154 238 QVRLYDTSAQRR---------PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG--KL--LGCFIGKCSGSI 304 (430)
Q Consensus 238 ~i~iwd~~~~~~---------~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~--~~--~~~~~~~~~~~v 304 (430)
.|.+||+.++.. .......|..+|.++.|.+.-..=++|+.+..+..|++... .+ ..++.-. ...|
T Consensus 176 hvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk-npGv 254 (323)
T KOG0322|consen 176 HVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLK-NPGV 254 (323)
T ss_pred eEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEec-CCCc
Confidence 999999998632 12233458899999999887667788888888999988643 22 1222222 4578
Q ss_pred EEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCC
Q 014154 305 RSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 305 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~ 374 (430)
..+..-||++++||++.|+.||||+.++.+++.. ++.| ...|.+++|+|+..+ ++++.|++|.+|+.
T Consensus 255 ~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAV--LkyH-sagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 255 SGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAV--LKYH-SAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cceEEccCCcEEeecccCCcEEEEEeccCCchhh--hhhh-hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 8899999999999999999999999999999998 6778 466799999999666 99999999999975
No 187
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=1.4e-15 Score=128.40 Aligned_cols=195 Identities=12% Similarity=0.170 Sum_probs=151.5
Q ss_pred ceEEEEEcCCCCEEEEEeCC--CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE
Q 014154 164 TIAFSKVDISEKFSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 241 (430)
.|..+-|+ ..+++..+.+ ..++++++..+..+.++.-+ ..|.++.+ +-++|+++-.+. |+|
T Consensus 48 ~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp----------t~IL~Vrm----Nr~RLvV~Lee~-IyI 110 (391)
T KOG2110|consen 48 SIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIFFP----------TSILAVRM----NRKRLVVCLEES-IYI 110 (391)
T ss_pred EEEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEecC----------CceEEEEE----ccceEEEEEccc-EEE
Confidence 34445554 3455544443 34899999887777665543 56889998 556777766654 999
Q ss_pred EECCCCCcceEEEee---cCCCeEEEEecCCCCEEEEEe--CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeE
Q 014154 242 YDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGN--GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII 316 (430)
Q Consensus 242 wd~~~~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 316 (430)
||+++.+ ++.++.. +...+.++++++.+.+|+.-+ ..|.|.+||+.+-+.+..+..| .+.+.+++|+++|.+|
T Consensus 111 ydI~~Mk-lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH-~~~lAalafs~~G~ll 188 (391)
T KOG2110|consen 111 YDIKDMK-LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAH-KGPLAALAFSPDGTLL 188 (391)
T ss_pred Eecccce-eehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEec-CCceeEEEECCCCCEE
Confidence 9999865 4555543 344566777777777887543 4589999999999999999998 9999999999999999
Q ss_pred EEEeCCCc-EEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCCc
Q 014154 317 ASCGLDSY-LRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 317 ~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~ 378 (430)
||+|+.|+ ||||.+.+|+.+..|+ +|-....|.+++|+|++++ .+.+.-++|++|......
T Consensus 189 ATASeKGTVIRVf~v~~G~kl~eFR-RG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 189 ATASEKGTVIRVFSVPEGQKLYEFR-RGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEeccCceEEEEEEcCCccEeeeee-CCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 99999996 7899999999999974 4544566899999999999 778889999999887654
No 188
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.5e-17 Score=147.36 Aligned_cols=297 Identities=13% Similarity=0.135 Sum_probs=194.3
Q ss_pred eeeecCCCceEEE--EccCCC---------------CCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEE
Q 014154 17 ALTFDSLGLIKVI--EARGEH---------------GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDI 79 (430)
Q Consensus 17 l~t~~~dg~i~vw--~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~i 79 (430)
.++.+.+...++| ++.... ........++..|...++.+++ +|....|++++.||+|++
T Consensus 245 ~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~----~~sep~lit~sed~~lk~ 320 (577)
T KOG0642|consen 245 SVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAF----HPSEPVLITASEDGTLKL 320 (577)
T ss_pred cccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeeeecchhhhhhhhc----CCCCCeEEEeccccchhh
Confidence 5677777888888 433210 0001111244556666555554 455567999999999999
Q ss_pred ecCCCCccc--ceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCC-cceEE
Q 014154 80 LNPLNGDLR--VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSC-STVKS 156 (430)
Q Consensus 80 wd~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~-~~i~~ 156 (430)
|+++....- ..++.+ ..|.+|..++.++.+-... ..+++++.||+++.|++..+.+.-.+.| ..+.-
T Consensus 321 WnLqk~~~s~~~~~epi--~tfraH~gPVl~v~v~~n~--------~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~ 390 (577)
T KOG0642|consen 321 WNLQKAKKSAEKDVEPI--LTFRAHEGPVLCVVVPSNG--------EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSG 390 (577)
T ss_pred hhhcccCCccccceeee--EEEecccCceEEEEecCCc--------eEEEeeccCceeeeeccCCCCCcccccCcchhcc
Confidence 999431110 011111 1244677798877776554 4999999999999998863322111111 12222
Q ss_pred eeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC
Q 014154 157 WNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND 236 (430)
Q Consensus 157 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 236 (430)
--..|...++.+++++....|++++.||++++|+...... ..+...... ....++.|. +.+-...++...-
T Consensus 391 ~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~-------g~Plsvd~~-ss~~a~~~~s~~~ 461 (577)
T KOG0642|consen 391 TLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEH-------GYPLSVDRT-SSRPAHSLASFRF 461 (577)
T ss_pred ceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCcccc-------CCcceEeec-cchhHhhhhhccc
Confidence 2346788999999999999999999999999999866544 223222211 334555552 1111222222222
Q ss_pred CcEEEEECCCCCcceEEEeec-------CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEe
Q 014154 237 HQVRLYDTSAQRRPVMSFDFR-------ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 237 g~i~iwd~~~~~~~~~~~~~~-------~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~ 309 (430)
+.--++++..... +..+... ...+.-+.++|...+.+++..|+.|+++|..++.++.....| ...++++++
T Consensus 462 ~~~~~~~~ev~s~-~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~-~~svtslai 539 (577)
T KOG0642|consen 462 GYTSIDDMEVVSD-LLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH-KDSVTSLAI 539 (577)
T ss_pred ccccchhhhhhhh-eeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeec-cceecceee
Confidence 3333334433222 2222221 124667888999999999999999999999999999999998 889999999
Q ss_pred cCCCCeEEEEeCCCcEEEEECCCCceeeE
Q 014154 310 HPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 310 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 338 (430)
.|+|.+|++++.|+.+++|.+....++..
T Consensus 540 ~~ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 540 DPNGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred cCCCceEEeecCCceeehhhccchheeec
Confidence 99999999999999999999977666654
No 189
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.3e-17 Score=143.73 Aligned_cols=304 Identities=13% Similarity=0.112 Sum_probs=217.4
Q ss_pred eeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccc
Q 014154 42 VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS 121 (430)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 121 (430)
...|..|.+.|..+.| ...|..|++|+.|..|.+||+..+.....+.. +|...+.+..|++...
T Consensus 135 ~~kL~~H~GcVntV~F----N~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S-------GH~~NvfQaKFiP~s~----- 198 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHF----NQRGDVLASGSDDLQVVVWDWVSGSPKLSFES-------GHCNNVFQAKFIPFSG----- 198 (559)
T ss_pred hhcccCCCCccceeee----cccCceeeccCccceEEeehhhccCccccccc-------ccccchhhhhccCCCC-----
Confidence 3456678888665555 44678999999999999999998887777654 3444555556666543
Q ss_pred cCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEee
Q 014154 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTA 200 (430)
Q Consensus 122 ~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~ 200 (430)
...+++++.+|.+++-.+... +...++.++. .|.+.|..++.-|. ..-|++++.|+.+.-+|++.......+
T Consensus 199 -d~ti~~~s~dgqvr~s~i~~t----~~~e~t~rl~--~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~ 271 (559)
T KOG1334|consen 199 -DRTIVTSSRDGQVRVSEILET----GYVENTKRLA--PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF 271 (559)
T ss_pred -CcCceeccccCceeeeeeccc----cceecceecc--cccCccceeeecCCCCCcccccccccceeeeeeccCCcccee
Confidence 247899999999998887533 2333344443 46789999999985 467889999999999999876554333
Q ss_pred CCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcEEEEECCCCCc-----ceEEEee------cCCCeEEEEecC
Q 014154 201 KPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRR-----PVMSFDF------RETPIKAVAEEP 268 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~------~~~~i~~~~~sp 268 (430)
......... ......++. .| +...+++++.|..+++||.+.-.. ++..+.. ..-.|++++|+.
T Consensus 272 ~cr~~~~~~---~v~L~~Ia~--~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh 346 (559)
T KOG1334|consen 272 VCREADEKE---RVGLYTIAV--DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSH 346 (559)
T ss_pred eeeccCCcc---ceeeeeEec--CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecC
Confidence 222111100 023556666 44 445899999999999999875321 1222221 124789999998
Q ss_pred CCCEEEEEeCCCcEEEEEccC--C----------eEEe-eeeCCCC-CCeEEEEe-cCCCCeEEEEeCCCcEEEEECCCC
Q 014154 269 DSFNIYIGNGSGDLASVDIRT--G----------KLLG-CFIGKCS-GSIRSIAR-HPTLPIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 269 ~~~~l~~~~~d~~i~iwd~~~--~----------~~~~-~~~~~~~-~~v~~i~~-~~~~~~l~s~~~dg~i~iwd~~~~ 333 (430)
++.-|+++..|-.|++|.-.. | ..+. .+++|.. ..|..+-| -|...|+++|+.-|.|.||+-.++
T Consensus 347 ~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 347 DGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred CccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh
Confidence 888888888899999995432 2 2223 3778732 24666654 578899999999999999999999
Q ss_pred ceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 334 QLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
+.+.. +.+. ..+|+|+.=+|--.+ ++.+-|..|+||....
T Consensus 427 eii~~--MegD-r~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 427 EIIRF--MEGD-RHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred HHHHH--hhcc-cceEeccCCCCCCchhhccCCccceeeecCCc
Confidence 99886 5666 448999999999888 8999999999998744
No 190
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=7.6e-16 Score=143.68 Aligned_cols=329 Identities=13% Similarity=0.120 Sum_probs=214.5
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCC-ceeEEeecCCeEEEecCCCCcccceeec
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQND-PLLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
.+.+-+..+..|+||...++ .++..+.+|..++..+.+.. ++.. .++.+.+.+|.|++||...+.++.++..
T Consensus 28 ~k~l~~~~~~~V~VyS~~Tg-----~~i~~l~~~~a~l~s~~~~~--~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 28 AKFLFLCTGNFVKVYSTATG-----ECITSLEDHTAPLTSVIVLP--SSENANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred CcEEEEeeCCEEEEEecchH-----hhhhhcccccCccceeeecC--CCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 45555666789999999998 78888999999977666665 4333 6788999999999999999999888876
Q ss_pred cCCCCCCCCCCceEEEEEeecCcccc------cccCceEEEEccCC--eeEEEEeeecCccccCCCcceEEeeecCCCce
Q 014154 94 AGDSGAQPEDDGIVGLHLFKRQREES------SSRSRTLLTCTTKG--KASMRSIEVTKVSAESSCSTVKSWNVCASGTI 165 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~g--~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i 165 (430)
..+ +..+.+.+.....+ ......+.+...+- +..-..+.... ....-+...+ ..-
T Consensus 101 ~~~---------v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~-------~~~~d~~~~~-~~~ 163 (792)
T KOG1963|consen 101 NLP---------VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFD-------SAKGDFLKEH-QEP 163 (792)
T ss_pred CCc---------eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeecc-------ccchhhhhhh-cCC
Confidence 211 11111111000000 00000111111110 11111111000 0000011111 113
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECC
Q 014154 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 245 (430)
.++.+++.+.+.+..-.. .+.+|....... ....+. ....|...+++.++ +|++++++++..||.|.+|.--
T Consensus 164 ~~I~~~~~ge~~~i~~~~-~~~~~~v~~~~~--~~~~~~---~~~~Htf~~t~~~~--spn~~~~Aa~d~dGrI~vw~d~ 235 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMC-KIHIYFVPKHTK--HTSSRD---ITVHHTFNITCVAL--SPNERYLAAGDSDGRILVWRDF 235 (792)
T ss_pred ccEEEcCCceEEEEEEee-eEEEEEecccce--eeccch---hhhhhcccceeEEe--ccccceEEEeccCCcEEEEecc
Confidence 567778777777665544 788898876541 111111 12223345788999 8999999999999999999643
Q ss_pred C---CCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCC
Q 014154 246 A---QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD 322 (430)
Q Consensus 246 ~---~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d 322 (430)
. .......+..|...|.+++|+++|.+|++|+..+.+.+|.+.+++. +|-..-.++|..+.+|||+.+.+....|
T Consensus 236 ~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k--qfLPRLgs~I~~i~vS~ds~~~sl~~~D 313 (792)
T KOG1963|consen 236 GSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK--QFLPRLGSPILHIVVSPDSDLYSLVLED 313 (792)
T ss_pred ccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc--ccccccCCeeEEEEEcCCCCeEEEEecC
Confidence 2 1223567888999999999999999999999999999999999883 3333237899999999999999999999
Q ss_pred CcEEEEECCCCceeeEEE-e-------eccccceEEeeecccc-ccccccCCCCceEecCCCCC
Q 014154 323 SYLRFWDIKTRQLLSAVF-L-------KQHLNEVVFDSAFADK-EVANAAADAPMLEIQNGNDT 377 (430)
Q Consensus 323 g~i~iwd~~~~~~~~~~~-~-------~~~~~~~v~~~~~s~~-g~~~~~~~d~~i~~~~~~~~ 377 (430)
+.|.+....+.....++. + +.......+.++++|. +..+..+..+.|++|+....
T Consensus 314 NqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 314 NQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTD 377 (792)
T ss_pred ceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccc
Confidence 999999886655443321 0 1112445678889994 44488999999999998653
No 191
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=7.6e-17 Score=136.96 Aligned_cols=164 Identities=12% Similarity=0.115 Sum_probs=139.1
Q ss_pred cCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC------CcceEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEE
Q 014154 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ------RRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLA 283 (430)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~ 283 (430)
.|...|..++|. +.+.+.||+|+.|.+|.||++..+ ..|+..+.+|...|--++|+|.. +.|++++.|++|.
T Consensus 79 GHt~~vLDi~w~-PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~ 157 (472)
T KOG0303|consen 79 GHTAPVLDIDWC-PFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVS 157 (472)
T ss_pred CccccccccccC-ccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEE
Confidence 355789999996 446779999999999999998653 24688999999999999999975 6888999999999
Q ss_pred EEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccccccccc
Q 014154 284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAA 363 (430)
Q Consensus 284 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~ 363 (430)
+||+.+++.+.++. | ...|+++.|+.+|.+|++.+.|..|||||.++++.+.. -.+|.+..-..+.|-.+|.+++.
T Consensus 158 iWnv~tgeali~l~-h-pd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e--~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 158 IWNVGTGEALITLD-H-PDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE--GVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred EEeccCCceeeecC-C-CCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeee--cccccCCCcceeEEeccCceeee
Confidence 99999999988887 6 89999999999999999999999999999999999987 45665655567788888887433
Q ss_pred ----CCCCceEecCCCCCcc
Q 014154 364 ----ADAPMLEIQNGNDTQE 379 (430)
Q Consensus 364 ----~~d~~i~~~~~~~~~~ 379 (430)
..+..+-+|+...+.+
T Consensus 234 Gfsr~seRq~aLwdp~nl~e 253 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEE 253 (472)
T ss_pred ccccccccceeccCcccccC
Confidence 4578899999876643
No 192
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.75 E-value=4.7e-18 Score=156.97 Aligned_cols=283 Identities=16% Similarity=0.214 Sum_probs=204.7
Q ss_pred eeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccc
Q 014154 41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (430)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 120 (430)
.+..+.+|-..|+|..|-- .|.++++|+.|..++||..+++.++..+.+| ...|..+++....
T Consensus 182 ~ikrLlgH~naVyca~fDr----tg~~Iitgsdd~lvKiwS~et~~~lAs~rGh--------s~ditdlavs~~n----- 244 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDR----TGRYIITGSDDRLVKIWSMETARCLASCRGH--------SGDITDLAVSSNN----- 244 (1113)
T ss_pred HHHHHHhhhhheeeeeecc----ccceEeecCccceeeeeeccchhhhccCCCC--------ccccchhccchhh-----
Confidence 3445667888877776643 5779999999999999999999999888774 3466666654433
Q ss_pred ccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEee
Q 014154 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA 200 (430)
Q Consensus 121 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 200 (430)
-.+++++.|..++||.+.... .|.+.. .|.+.|++++|+|-. +.+.||++++||.+-.-.++.
T Consensus 245 ---~~iaaaS~D~vIrvWrl~~~~--------pvsvLr-ghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~- 307 (1113)
T KOG0644|consen 245 ---TMIAAASNDKVIRVWRLPDGA--------PVSVLR-GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYV- 307 (1113)
T ss_pred ---hhhhhcccCceEEEEecCCCc--------hHHHHh-ccccceeeeccCccc----cCCCCCceEeccccccccccC-
Confidence 377888888899999986544 344443 678999999999954 678999999999871111111
Q ss_pred CCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCC-CCEEEEEeCC
Q 014154 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGS 279 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~d 279 (430)
. . +........+.++.| ..++..+++++.|+.-..|.+.... .+...+.-+.++.+ ..+.+++-.+
T Consensus 308 -p-r--p~~~~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~-------~~~~~lif~t~ssd~~~~~~~ar~~ 374 (1113)
T KOG0644|consen 308 -P-R--PLKFTEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLA-------WRSNLLIFVTRSSDLSSIVVTARND 374 (1113)
T ss_pred -C-C--CCCcccccceeeeec--cccccccccccCCcccccchhhHhh-------hhccceEEEeccccccccceeeeee
Confidence 0 0 011111144666777 6678889999999998888765311 11111111222212 2466677778
Q ss_pred CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccc
Q 014154 280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE 358 (430)
Q Consensus 280 ~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 358 (430)
..+++|++.+|++.+.+.+| ...++.+.+||-. ....+++.||...|||+-.|.++..++ .+| . .+...+||+||
T Consensus 375 ~~~~vwnl~~g~l~H~l~gh-sd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~-~gh-~-kl~d~kFSqdg 450 (1113)
T KOG0644|consen 375 HRLCVWNLYTGQLLHNLMGH-SDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF-IGH-G-KLVDGKFSQDG 450 (1113)
T ss_pred eEeeeeecccchhhhhhccc-ccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee-ccc-c-eeeccccCCCC
Confidence 88999999999999999998 8899999999965 456789999999999999999988764 555 3 35788999999
Q ss_pred cc-cccCCCCceEecCC
Q 014154 359 VA-NAAADAPMLEIQNG 374 (430)
Q Consensus 359 ~~-~~~~~d~~i~~~~~ 374 (430)
.. +...+-|.++|+..
T Consensus 451 ts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 451 TSIALSDDHGQLYILGT 467 (1113)
T ss_pred ceEecCCCCCceEEecc
Confidence 98 66667788888764
No 193
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.75 E-value=1.2e-16 Score=140.83 Aligned_cols=209 Identities=13% Similarity=0.122 Sum_probs=154.2
Q ss_pred CceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCC
Q 014154 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (430)
Q Consensus 123 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 202 (430)
...++.++.||...+.+-. +.+..---.|.+.+.+-.|+|+|.-|++++.||.|++|.-. |-...++..
T Consensus 75 ~d~~~i~s~DGkf~il~k~----------~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q 143 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKS----------ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQ 143 (737)
T ss_pred cceEEEEcCCceEEEeccc----------chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhh
Confidence 3578889999988777522 11111112577889999999999999999999999999853 322222222
Q ss_pred CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcE
Q 014154 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL 282 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i 282 (430)
. ...|.|++| .|+.+.++.| ..+.+.|=-+.... .+...+.|.+-|.++.|+|...++++|++|-..
T Consensus 144 ~---------~~~v~c~~W--~p~S~~vl~c-~g~h~~IKpL~~n~-k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kf 210 (737)
T KOG1524|consen 144 N---------EESIRCARW--APNSNSIVFC-QGGHISIKPLAANS-KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRF 210 (737)
T ss_pred c---------CceeEEEEE--CCCCCceEEe-cCCeEEEeeccccc-ceeEEeccCcEEEEeecCccccceeecCCceeE
Confidence 1 167999999 7777766664 44566666666534 367789999999999999999999999999999
Q ss_pred EEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-c
Q 014154 283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-N 361 (430)
Q Consensus 283 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~ 361 (430)
++||. .|+.+..-..| ..+|++++|+|+ ..++.++.+ ++| +.....+.|+.++||+||.. +
T Consensus 211 KvWD~-~G~~Lf~S~~~-ey~ITSva~npd-~~~~v~S~n-t~R--------------~~~p~~GSifnlsWS~DGTQ~a 272 (737)
T KOG1524|consen 211 KIWDA-QGANLFTSAAE-EYAITSVAFNPE-KDYLLWSYN-TAR--------------FSSPRVGSIFNLSWSADGTQAT 272 (737)
T ss_pred Eeecc-cCcccccCChh-ccceeeeeeccc-cceeeeeee-eee--------------ecCCCccceEEEEEcCCCceee
Confidence 99996 67777777777 899999999999 556666543 333 22222445799999999998 6
Q ss_pred ccCCCCceEecC
Q 014154 362 AAADAPMLEIQN 373 (430)
Q Consensus 362 ~~~~d~~i~~~~ 373 (430)
+|...|.+.+-.
T Consensus 273 ~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 273 CGTSTGQLIVAY 284 (737)
T ss_pred ccccCceEEEee
Confidence 666777765543
No 194
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.75 E-value=8.2e-16 Score=147.99 Aligned_cols=271 Identities=14% Similarity=0.143 Sum_probs=184.4
Q ss_pred EEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEE
Q 014154 29 IEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVG 108 (430)
Q Consensus 29 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 108 (430)
|++++ .++..+.+|...+.-++.+ ++++.++++|+.||+|++|+...-. .. ....
T Consensus 1034 W~p~G------~lVAhL~Ehs~~v~k~a~s---~~~~s~FvsgS~DGtVKvW~~~k~~--~~-------------~~s~- 1088 (1431)
T KOG1240|consen 1034 WNPRG------ILVAHLHEHSSAVIKLAVS---SEHTSLFVSGSDDGTVKVWNLRKLE--GE-------------GGSA- 1088 (1431)
T ss_pred CCccc------eEeehhhhccccccceeec---CCCCceEEEecCCceEEEeeehhhh--cC-------------ccee-
Confidence 77777 6888899998887755554 3556899999999999999974211 00 0000
Q ss_pred EEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 014154 109 LHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNV 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~ 188 (430)
. ....|.. .+..+.++.+.++++.+|+++.||.|.+
T Consensus 1089 -r------------------------------------------S~ltys~-~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1089 -R------------------------------------------SELTYSP-EGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred -e------------------------------------------eeEEEec-cCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence 0 1112221 3567788888889999999999999999
Q ss_pred EECCCC--ee-----eEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEEEEECCCCCcceEE--EeecC
Q 014154 189 WDLDKC--EK-----IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVMS--FDFRE 258 (430)
Q Consensus 189 ~d~~~~--~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~ 258 (430)
.+++.. .. .+....+. ....|...+|. ..... .|+.+...+.|..||++.... ... .....
T Consensus 1125 ~~id~~~~~~~~~~~~ri~n~~~-------~g~vv~m~a~~-~~~~S~~lvy~T~~~~iv~~D~r~~~~-~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPNLKK-------DGVVVSMHAFT-AIVQSHVLVYATDLSRIVSWDTRMRHD-AWRLKNQLRH 1195 (1431)
T ss_pred EEccccccccceeeeeecccccC-------CCceEEeeccc-ccccceeEEEEEeccceEEecchhhhh-HHhhhcCccc
Confidence 998762 11 11111111 11234444443 23344 788899999999999997443 222 22234
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC---CeEEEEe--CCCcEEEEECCCC
Q 014154 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL---PIIASCG--LDSYLRFWDIKTR 333 (430)
Q Consensus 259 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~---~~l~s~~--~dg~i~iwd~~~~ 333 (430)
+.|++++.+|.++++++|+..|.+.+||+|-+.++..+...+..+|+.+..+|-. ...++++ ..+.|.+|++.+|
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 7899999999999999999999999999999998888775546889988888743 3444444 5788999999998
Q ss_pred ceeeEEEee-c----------------cccceEEeeeccccccccccCCCCceEecCCCCC
Q 014154 334 QLLSAVFLK-Q----------------HLNEVVFDSAFADKEVANAAADAPMLEIQNGNDT 377 (430)
Q Consensus 334 ~~~~~~~~~-~----------------~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~ 377 (430)
.+..++... + +.-..+.+.--.+++-.++++.|..|+.||....
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 776654322 0 0011223333334444599999999999998754
No 195
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=4.5e-18 Score=147.27 Aligned_cols=255 Identities=9% Similarity=0.068 Sum_probs=189.7
Q ss_pred CCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEe
Q 014154 61 DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI 140 (430)
Q Consensus 61 ~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~ 140 (430)
...+|.+|+.|+..|.|..+|+.++++..++..- ..+..+.|+... .+++......+.||+-
T Consensus 137 ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~---------Etv~Dv~~LHne---------q~~AVAQK~y~yvYD~ 198 (545)
T KOG1272|consen 137 YTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM---------ETVRDVTFLHNE---------QFFAVAQKKYVYVYDN 198 (545)
T ss_pred ecCCccEEEecCCccceeeeecccceeeeeeehh---------hhhhhhhhhcch---------HHHHhhhhceEEEecC
Confidence 3678999999999999999999999988777651 233344454432 4555556666666652
Q ss_pred eecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEE
Q 014154 141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAA 220 (430)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 220 (430)
. -+.+..+.....|..+.|-|..-+|++++..|.+..-|+.+|+.+..+.... ..+..+.
T Consensus 199 ~-----------GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~---------G~~~vm~ 258 (545)
T KOG1272|consen 199 N-----------GTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA---------GRTDVMK 258 (545)
T ss_pred C-----------CcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC---------Cccchhh
Confidence 2 1223334445678889999999999999999999999999999987776644 3455555
Q ss_pred EeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC
Q 014154 221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC 300 (430)
Q Consensus 221 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 300 (430)
- +|-...+-+|...|+|.+|.... +.|+..+-.|.++|.+|++.++|+|++|.+.|..++|||+++...+.++..
T Consensus 259 q--NP~NaVih~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-- 333 (545)
T KOG1272|consen 259 Q--NPYNAVIHLGHSNGTVSLWSPNS-KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-- 333 (545)
T ss_pred c--CCccceEEEcCCCceEEecCCCC-cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec--
Confidence 5 77788999999999999999997 457888888999999999999999999999999999999999887777765
Q ss_pred CCCeEEEEecCCCCeEEEEeCCCcEEEEEC-CCCc-eeeEEEeeccccceEEeeeccccccc
Q 014154 301 SGSIRSIARHPTLPIIASCGLDSYLRFWDI-KTRQ-LLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 301 ~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~-~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~ 360 (430)
.-+...++||..| ++.++.-..|.||.= -.+. .....++.......|.++.|.|-..+
T Consensus 334 p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDv 393 (545)
T KOG1272|consen 334 PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDV 393 (545)
T ss_pred CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHe
Confidence 2366788898777 334445557999952 2211 22222233334557899999997665
No 196
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=4.1e-16 Score=137.96 Aligned_cols=231 Identities=13% Similarity=0.099 Sum_probs=155.9
Q ss_pred eeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccc
Q 014154 41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (430)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 120 (430)
+.+.+.+|.+.|.++.+ +.+|.+|++|+.|-.+.|||.-..+++..+.. +|...|.++++.+....
T Consensus 42 lE~eL~GH~GCVN~LeW----n~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T-------gHtaNIFsvKFvP~tnn--- 107 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEW----NADGELLASGSDDTRLIVWDPFEYKLLHSIST-------GHTANIFSVKFVPYTNN--- 107 (758)
T ss_pred hhhhhccccceecceee----cCCCCEEeecCCcceEEeecchhcceeeeeec-------ccccceeEEeeeccCCC---
Confidence 33567889999877666 45788999999999999999988887777654 45568888898887552
Q ss_pred ccCceEEEEccCCeeEEEEeeecCc--cccCCCcceEEeeecCCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeee
Q 014154 121 SRSRTLLTCTTKGKASMRSIEVTKV--SAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKI 197 (430)
Q Consensus 121 ~~~~~~~~~~~~g~~~v~~~~~~~~--~~~~~~~~i~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~ 197 (430)
..++++..|..++++++..... .--....+++.|. .|...|..++..|++ +.+.+++.||+|+-||++.....
T Consensus 108 ---riv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c 183 (758)
T KOG1310|consen 108 ---RIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC 183 (758)
T ss_pred ---eEEEeccCcceEEEEecccccccccccCccchhhhhh-hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC
Confidence 4788899999999999875432 1111223556676 567788889999987 78899999999999999753211
Q ss_pred Ee-eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC-----------c------ceEEE-eecC
Q 014154 198 WT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-----------R------PVMSF-DFRE 258 (430)
Q Consensus 198 ~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------~------~~~~~-~~~~ 258 (430)
.. ...+..-..-....-...++... +.+..+|++|+.|-..++||.+... . .+..+ .+|.
T Consensus 184 ~p~~~~~~~l~ny~~~lielk~ltis-p~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl 262 (758)
T KOG1310|consen 184 NPDEDCPSILVNYNPQLIELKCLTIS-PSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL 262 (758)
T ss_pred CccccccHHHHHhchhhheeeeeeec-CCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc
Confidence 10 00000000000001235677774 3356799999999999999944211 0 12211 1221
Q ss_pred --------C---CeEEEEecCCCCEEEEEeCCCcEEEEEccCC
Q 014154 259 --------T---PIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (430)
Q Consensus 259 --------~---~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 290 (430)
. -++-+.|+|+|.-|++.-..-.|+++|+..+
T Consensus 263 kn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 263 KNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred cCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence 1 1456789999988877777778999998654
No 197
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=9.7e-17 Score=137.72 Aligned_cols=163 Identities=19% Similarity=0.171 Sum_probs=123.0
Q ss_pred ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC-----CEEEEE
Q 014154 159 VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-----RKFVAG 233 (430)
Q Consensus 159 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~l~s~ 233 (430)
..|.+.|.++.|+|++++|++-+.| ..+||+.+++..+........ ......+.| +.++ .+++..
T Consensus 183 ~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k-------~~~~~~cRF--~~d~~~~~l~laa~~ 252 (398)
T KOG0771|consen 183 IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSK-------DEMFSSCRF--SVDNAQETLRLAASQ 252 (398)
T ss_pred HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCccc-------chhhhhcee--cccCCCceEEEEEec
Confidence 4677899999999999999999999 999999999866555442211 133556677 4444 223333
Q ss_pred eCCCcEEEEECCCCCc----ceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEe
Q 014154 234 TNDHQVRLYDTSAQRR----PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 234 ~~dg~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~ 309 (430)
..-+.|+.||+..... +..........|++++.+++|++++.|+.||.|-|++..+.+.++..+..|...|+.+.|
T Consensus 253 ~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF 332 (398)
T KOG0771|consen 253 FPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTF 332 (398)
T ss_pred CCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEE
Confidence 3455677777654222 112222223579999999999999999999999999999999887777655899999999
Q ss_pred cCCCCeEEEEeCCCcEEEEECC
Q 014154 310 HPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 310 ~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
+|+.+++++.+.|....|..+.
T Consensus 333 ~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 333 SPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred cCCcCcccccccCCceeEEEEe
Confidence 9999999999999988887764
No 198
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.73 E-value=1.9e-16 Score=139.73 Aligned_cols=174 Identities=21% Similarity=0.239 Sum_probs=134.5
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC----
Q 014154 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ---- 247 (430)
Q Consensus 172 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---- 247 (430)
+.+--|++|-.-|.|.+.|....+....+... .......|+++.|.+. +...++++-.+|.+++||....
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~-----r~i~ktsvT~ikWvpg-~~~~Fl~a~~sGnlyly~~~~~~~~t 256 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEE-----RLINKSSVTCIKWVPG-SDSLFLVAHASGNLYLYDKEIVCGAT 256 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhc-----ccccccceEEEEEEeC-CCceEEEEEecCceEEeeccccccCC
Confidence 45667788888899999887652221111111 0111267999999743 4456667788999999976421
Q ss_pred -----------------------CcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCe
Q 014154 248 -----------------------RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSI 304 (430)
Q Consensus 248 -----------------------~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v 304 (430)
..|+..+...++.|..++|+|||++||+.+.||.+||||+.+.+++..++.. -+..
T Consensus 257 ~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY-FGGL 335 (636)
T KOG2394|consen 257 APSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY-FGGL 335 (636)
T ss_pred CCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh-ccce
Confidence 0233334444568899999999999999999999999999999888888776 6789
Q ss_pred EEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecc
Q 014154 305 RSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFA 355 (430)
Q Consensus 305 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 355 (430)
.|++|||||+||++|++|-.|.||.+..++.+.. -+|| ...|..++|.
T Consensus 336 LCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR--GqGH-kSWVs~VaFD 383 (636)
T KOG2394|consen 336 LCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR--GQGH-KSWVSVVAFD 383 (636)
T ss_pred EEEEEcCCccEEEecCCcceEEEEEeccceEEEe--cccc-ccceeeEeec
Confidence 9999999999999999999999999999999987 7788 7788999988
No 199
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.73 E-value=6.7e-17 Score=145.21 Aligned_cols=236 Identities=12% Similarity=0.074 Sum_probs=164.9
Q ss_pred ccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCC
Q 014154 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL 208 (430)
Q Consensus 130 ~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 208 (430)
+.+|.+.|+.+...... .|+.+- .+.++..|+.+.|+| +...|++++.||.|++|.+..+......... ...
T Consensus 600 g~gG~iai~el~~PGrL---PDgv~p--~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tP--e~~ 672 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRL---PDGVMP--GLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTP--EKI 672 (1012)
T ss_pred CCCceEEEEEcCCCCCC---Cccccc--ccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCc--cee
Confidence 44566777776543321 122211 122356799999999 8889999999999999999764322111111 111
Q ss_pred CCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEcc
Q 014154 209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (430)
Q Consensus 209 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 288 (430)
-..|...|+++.|++ -..+.|++++.|-+|++||++++. ....+.+|.+.|..++|||+|+.+++.+.||+|++|..+
T Consensus 673 lt~h~eKI~slRfHP-LAadvLa~asyd~Ti~lWDl~~~~-~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Pr 750 (1012)
T KOG1445|consen 673 LTIHGEKITSLRFHP-LAADVLAVASYDSTIELWDLANAK-LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPR 750 (1012)
T ss_pred eecccceEEEEEecc-hhhhHhhhhhccceeeeeehhhhh-hhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCC
Confidence 112347899999952 245689999999999999999866 477899999999999999999999999999999999998
Q ss_pred CCeE-EeeeeCCCCCCeEEEEecCCCCeEEEEeCCC----cEEEEECCC--CceeeEEEeeccccceEEeeeccccccc-
Q 014154 289 TGKL-LGCFIGKCSGSIRSIARHPTLPIIASCGLDS----YLRFWDIKT--RQLLSAVFLKQHLNEVVFDSAFADKEVA- 360 (430)
Q Consensus 289 ~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg----~i~iwd~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~- 360 (430)
.++. +++-.+.-...--.|.|.-+|+++++.+.|. .|.+||.++ +..+.+..+....+ +.-..|.+|...
T Consensus 751 s~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps--~LvP~YD~Ds~~l 828 (1012)
T KOG1445|consen 751 SREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPS--PLVPHYDYDSNVL 828 (1012)
T ss_pred CCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCc--cccccccCCCceE
Confidence 7653 4443332223345677888999998888764 688998875 34555533333322 233456666554
Q ss_pred -cccCCCCceEecCCCC
Q 014154 361 -NAAADAPMLEIQNGND 376 (430)
Q Consensus 361 -~~~~~d~~i~~~~~~~ 376 (430)
++|-.|..|.+|+...
T Consensus 829 fltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 829 FLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred EEecCCCceEEEEEecC
Confidence 8888999999998654
No 200
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1e-16 Score=137.57 Aligned_cols=194 Identities=14% Similarity=0.062 Sum_probs=149.4
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECC
Q 014154 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 245 (430)
.+++|++++..|++++.||++|+|++.+...+.....+. ..|.++.| +||+.+|++-+.| ..+||+.+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~---------~eV~DL~F--S~dgk~lasig~d-~~~VW~~~ 215 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHH---------AEVKDLDF--SPDGKFLASIGAD-SARVWSVN 215 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhc---------Ccccccee--CCCCcEEEEecCC-ceEEEEec
Confidence 789999999999999999999999987766665555544 67999999 9999999999999 99999999
Q ss_pred CCCcceEEEe--ecCCCeEEEEecCCC---CEE--EEEeCCCcEEEEEccCCeE------EeeeeCCCCCCeEEEEecCC
Q 014154 246 AQRRPVMSFD--FRETPIKAVAEEPDS---FNI--YIGNGSGDLASVDIRTGKL------LGCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 246 ~~~~~~~~~~--~~~~~i~~~~~sp~~---~~l--~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~v~~i~~~~~ 312 (430)
++.. +.... ........+.|+.|+ .+. +.-...+.|+.||+...+- ...+.. ...|++++.+++
T Consensus 216 ~g~~-~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~--~~siSsl~VS~d 292 (398)
T KOG0771|consen 216 TGAA-LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR--FKSISSLAVSDD 292 (398)
T ss_pred cCch-hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc--cCcceeEEEcCC
Confidence 9743 44333 123356677787776 333 3333446677776643221 112222 357999999999
Q ss_pred CCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 313 LPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 313 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
|++++.|+.||.|-|++..+.++++-+ -+.| ...|+.+.|+||.++ ++.+.|....+.....
T Consensus 293 Gkf~AlGT~dGsVai~~~~~lq~~~~v-k~aH-~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 293 GKFLALGTMDGSVAIYDAKSLQRLQYV-KEAH-LGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEeccCCcEEEEEeceeeeeEee-hhhh-eeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999999998888764 4566 567899999999998 8888888888876655
No 201
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=1.8e-15 Score=123.79 Aligned_cols=248 Identities=14% Similarity=0.097 Sum_probs=173.9
Q ss_pred CCCCcceeeeeecCCCCC---ceeEEeecCCeEEEecCCCCcccceeec-cCCCCCCCCCCceEEEEEeecCcccccccC
Q 014154 48 PHSSNCVLAASIDDSQND---PLLAVARKNGLTDILNPLNGDLRVAISN-AGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (430)
Q Consensus 48 ~~~~~~~~~~~~~~~p~g---~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 123 (430)
|.-+++-+-+.+ .+.| ++||+.+ ..+++|.+...+.....+. ......+....+++++.|...+.
T Consensus 95 ~~YP~tK~~wiP--d~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp------- 163 (364)
T KOG0290|consen 95 HPYPVTKLMWIP--DSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDP------- 163 (364)
T ss_pred CCCCccceEecC--CccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCc-------
Confidence 555544444444 3222 3566543 6799999874322222221 11112223345777777776666
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEeeCC
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 202 (430)
.++.+.+.|-+..||++..+ ..++++.--+.|..+|..++|...+ +.+++.+.||.+++||++..+...-+..
T Consensus 164 ~~igtSSiDTTCTiWdie~~------~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE 237 (364)
T KOG0290|consen 164 NLIGTSSIDTTCTIWDIETG------VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE 237 (364)
T ss_pred ceeEeecccCeEEEEEEeec------cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec
Confidence 78899999999999999865 2457888888999999999999744 6788999999999999987554322222
Q ss_pred CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC-CcEEEEECCCCCcceEEEeecCCCeEEEEecCCC-CEEEEEeCCC
Q 014154 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSG 280 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~ 280 (430)
.... ..+...++|. ..+.+++++-..| ..|.|.|++....++..+.+|.+.|..|+|.|.. ..|.+++.|.
T Consensus 238 ~p~~------~~pLlRLswn-kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~ 310 (364)
T KOG0290|consen 238 DPSP------STPLLRLSWN-KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDC 310 (364)
T ss_pred CCCC------CCcceeeccC-cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcc
Confidence 1110 1456677774 3456677775554 4799999999888999999999999999999965 7889999999
Q ss_pred cEEEEEccCCe------EEeeeeCCCCCCeEEEEecC-CCCeEEEEeC
Q 014154 281 DLASVDIRTGK------LLGCFIGKCSGSIRSIARHP-TLPIIASCGL 321 (430)
Q Consensus 281 ~i~iwd~~~~~------~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~ 321 (430)
.+.+||+.+.- ++..+.. .+.|+.+.|++ ...+++.+..
T Consensus 311 qaliWDl~q~~~~~~~dPilay~a--~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 311 QALIWDLQQMPRENGEDPILAYTA--GGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred eEEEEecccccccCCCCchhhhhc--cceeeeeeecccCCCEEEEEec
Confidence 99999997532 2333443 67899999996 4567777753
No 202
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.72 E-value=3.1e-15 Score=144.09 Aligned_cols=284 Identities=15% Similarity=0.150 Sum_probs=178.8
Q ss_pred cceeeecCCCceEEEEccCCCC--CcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCC--cccce
Q 014154 15 LRALTFDSLGLIKVIEARGEHG--GVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG--DLRVA 90 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~--~~~~~ 90 (430)
..++||+.||+||+|+...-.. +..+...++......+..+.++. .|+.+|+|+.||.|++.++... .....
T Consensus 1062 s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~----~~~~~Av~t~DG~v~~~~id~~~~~~~~~ 1137 (1431)
T KOG1240|consen 1062 SLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG----NGDQFAVSTKDGSVRVLRIDHYNVSKRVA 1137 (1431)
T ss_pred ceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc----CCCeEEEEcCCCeEEEEEcccccccccee
Confidence 5689999999999999876322 33444455554556666777766 4568999999999999998752 11111
Q ss_pred eeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC---CCceEE
Q 014154 91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA---SGTIAF 167 (430)
Q Consensus 91 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~---~~~i~~ 167 (430)
.....+ -.-..+.++.+.-+..... .-.++.++..+.+..|++....+ .|...+ .+.|++
T Consensus 1138 ~~~ri~--n~~~~g~vv~m~a~~~~~~-----S~~lvy~T~~~~iv~~D~r~~~~----------~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1138 TQVRIP--NLKKDGVVVSMHAFTAIVQ-----SHVLVYATDLSRIVSWDTRMRHD----------AWRLKNQLRHGLVTS 1200 (1431)
T ss_pred eeeecc--cccCCCceEEeeccccccc-----ceeEEEEEeccceEEecchhhhh----------HHhhhcCccccceeE
Confidence 111000 0011234444443333220 12667777777888888764332 343332 378999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee-cCCCCEEEEEe--CCCcEEEEEC
Q 014154 168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS-IDDHRKFVAGT--NDHQVRLYDT 244 (430)
Q Consensus 168 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~--~dg~i~iwd~ 244 (430)
++.+|.++++++|+..|.+.+||++=+..+.....+. ..+++.+..++ .+.....++++ ..+.|.+|++
T Consensus 1201 i~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~--------~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPA--------RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred EEecCCceEEEEecCCceEEEEEeecCceeecccCcc--------cCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 9999999999999999999999998777766654432 14566555532 23334555544 4778999999
Q ss_pred CCCCcceEEEeec-CC------------------CeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEE------------
Q 014154 245 SAQRRPVMSFDFR-ET------------------PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL------------ 293 (430)
Q Consensus 245 ~~~~~~~~~~~~~-~~------------------~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~------------ 293 (430)
.++.+ ...+-.. .. ......+..-+.++++|+.|..|+.||.......
T Consensus 1273 ~~g~~-~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~ 1351 (1431)
T KOG1240|consen 1273 ETGLR-QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYS 1351 (1431)
T ss_pred ccCcc-eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcccccc
Confidence 98754 3333221 10 1111223333568899999999999997532111
Q ss_pred -----------------ee-------------------ee-------CCCCCCeEEEEecCC-CCeEEEEeCCCcEEEE
Q 014154 294 -----------------GC-------------------FI-------GKCSGSIRSIARHPT-LPIIASCGLDSYLRFW 328 (430)
Q Consensus 294 -----------------~~-------------------~~-------~~~~~~v~~i~~~~~-~~~l~s~~~dg~i~iw 328 (430)
.. +. ..|..+|+++++... ..+|++++.||.|+||
T Consensus 1352 ~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiW 1430 (1431)
T KOG1240|consen 1352 TNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIW 1430 (1431)
T ss_pred ccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeec
Confidence 00 00 004567888877653 4689999999999999
No 203
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.8e-15 Score=141.38 Aligned_cols=235 Identities=12% Similarity=0.036 Sum_probs=152.7
Q ss_pred CCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecC---CeEEEecCCCCcccceeeccCCCCC
Q 014154 23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN---GLTDILNPLNGDLRVAISNAGDSGA 99 (430)
Q Consensus 23 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~ 99 (430)
+..|.+||..+. -...+..+... +....| +|||++|+..+.+ ..|.+||+.+++...
T Consensus 183 ~~~i~i~d~dg~------~~~~lt~~~~~--v~~p~w--SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~---------- 242 (429)
T PRK01742 183 PYEVRVADYDGF------NQFIVNRSSQP--LMSPAW--SPDGSKLAYVSFENKKSQLVVHDLRSGARKV---------- 242 (429)
T ss_pred eEEEEEECCCCC------CceEeccCCCc--cccceE--cCCCCEEEEEEecCCCcEEEEEeCCCCceEE----------
Confidence 468999999874 23344445554 455556 8899999887643 368888876543110
Q ss_pred CCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEE
Q 014154 100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF 179 (430)
Q Consensus 100 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~ 179 (430)
+ .. + .+....++|+|+++.|++
T Consensus 243 ------l---------------------~~---------------------------~----~g~~~~~~wSPDG~~La~ 264 (429)
T PRK01742 243 ------V---------------------AS---------------------------F----RGHNGAPAFSPDGSRLAF 264 (429)
T ss_pred ------E---------------------ec---------------------------C----CCccCceeECCCCCEEEE
Confidence 0 00 0 011124688999998887
Q ss_pred Ee-CCCeEE--EEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-CCCcEEEEECCCCCcceEEEe
Q 014154 180 GG-KGVEVN--VWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPVMSFD 255 (430)
Q Consensus 180 ~~-~d~~i~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~ 255 (430)
+. .+|.+. +||+.++.. ..+..+. ..+....| +|+++.|+.++ .++...||++.........+
T Consensus 265 ~~~~~g~~~Iy~~d~~~~~~-~~lt~~~---------~~~~~~~w--SpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l- 331 (429)
T PRK01742 265 ASSKDGVLNIYVMGANGGTP-SQLTSGA---------GNNTEPSW--SPDGQSILFTSDRSGSPQVYRMSASGGGASLV- 331 (429)
T ss_pred EEecCCcEEEEEEECCCCCe-EeeccCC---------CCcCCEEE--CCCCCEEEEEECCCCCceEEEEECCCCCeEEe-
Confidence 64 577654 456655543 2333222 34667889 89999777655 57888888775432223333
Q ss_pred ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC--CC
Q 014154 256 FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK--TR 333 (430)
Q Consensus 256 ~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~--~~ 333 (430)
.+.. .++.|+|+|++|+..+.++ +.+||+.+++........ ....+.|+|+|++|+.++.++.+.+|++. +|
T Consensus 332 ~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G 405 (429)
T PRK01742 332 GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF---LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG 405 (429)
T ss_pred cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 3333 4678999999998887765 666999988764332222 23567899999999999999988888763 57
Q ss_pred ceeeEEEeeccccceEEeeecccc
Q 014154 334 QLLSAVFLKQHLNEVVFDSAFADK 357 (430)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~~~~s~~ 357 (430)
+.+.. +.+| ...+..++|+|-
T Consensus 406 ~~~~~--l~~~-~g~~~~p~wsp~ 426 (429)
T PRK01742 406 RFKAR--LPGS-DGQVKFPAWSPY 426 (429)
T ss_pred CceEE--ccCC-CCCCCCcccCCC
Confidence 77766 4455 345688999984
No 204
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.71 E-value=8.3e-16 Score=145.89 Aligned_cols=271 Identities=13% Similarity=0.147 Sum_probs=193.6
Q ss_pred ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc
Q 014154 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~ 145 (430)
+||++|. .-.|.+||+..+..+..+.....+.+......+. + ..+.++++..-..+.+-...+.
T Consensus 18 ~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~---l----------~~~~~v~~~~~~~v~~~~~~~~-- 81 (967)
T KOG0974|consen 18 DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK---L----------LSGKIVTCAKSDEVYVKEASNQ-- 81 (967)
T ss_pred ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccce---e----------ccceEEEEEeecceeecchhhh--
Confidence 4676664 3679999999998877766532111111111110 1 1135555555444443332211
Q ss_pred cccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
.+..| ...|....+.-+...++.++.++.+.+||...+............. ...++-+-.++
T Consensus 82 -------~~~~~----s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~-------l~~~~~~g~s~ 143 (967)
T KOG0974|consen 82 -------IIERF----SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT-------LYSSLIIGDSA 143 (967)
T ss_pred -------hhhhc----cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEE-------EEeEEEEeccC
Confidence 11111 1233334444567888889999999999998877776665543211 12222222267
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEe-eeeCCCCCCe
Q 014154 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG-CFIGKCSGSI 304 (430)
Q Consensus 226 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v 304 (430)
+.-++++|+.-+.|.+|++.....+. .+.+|++.|.++.|+-||+++++.+.|.++++|++.+.+... ..-+| .++|
T Consensus 144 ~~~~i~~gsv~~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH-saRv 221 (967)
T KOG0974|consen 144 EELYIASGSVFGEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH-SARV 221 (967)
T ss_pred cEEEEEeccccccEEEEeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccc-ccee
Confidence 77799999999999999999645444 788999999999999999999999999999999999988766 66677 9999
Q ss_pred EEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154 305 RSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 305 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~ 377 (430)
..++|+|+ .+++++.|.+.++|+.. +..+.. +.+|....++.++..++... ++++.|+.+++|+....
T Consensus 222 w~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~--y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 222 WACCFLPN--RIITVGEDCTCRVWGVN-GTQLEV--YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEEEeccc--eeEEeccceEEEEEecc-cceehh--hhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 99999998 89999999999999765 455554 67788888999999999988 99999999999998764
No 205
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=4.8e-15 Score=126.08 Aligned_cols=304 Identities=13% Similarity=0.085 Sum_probs=204.3
Q ss_pred ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccC
Q 014154 44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (430)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 123 (430)
.+.+|.+.|.++.|+. ++++|++|+.|..+++|++...-..++-+.+ .+.-.+|...|.++.+-...
T Consensus 51 D~~~H~GCiNAlqFS~----N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI-~~~~~~H~SNIF~L~F~~~N-------- 117 (609)
T KOG4227|consen 51 DVREHTGCINALQFSH----NDRFLASGGDDMHGRVWNVDELMVRKTPKPI-GVMEHPHRSNIFSLEFDLEN-------- 117 (609)
T ss_pred hhhhhccccceeeecc----CCeEEeecCCcceeeeechHHHHhhcCCCCc-eeccCccccceEEEEEccCC--------
Confidence 3456888877766655 4789999999999999998532211111110 00112455677777765443
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCC
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 202 (430)
..+.++..++++...++.... +|.++.... .+.|..+..+|-.+.|++.+.++.|.+||.+....-..+..
T Consensus 118 ~~~~SG~~~~~VI~HDiEt~q--------si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~ 189 (609)
T KOG4227|consen 118 RFLYSGERWGTVIKHDIETKQ--------SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL 189 (609)
T ss_pred eeEecCCCcceeEeeecccce--------eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee
Confidence 388899999999999987654 566665432 35899999999999999999999999999976431111100
Q ss_pred CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeec------CCCeEEEEecCCCCEEEEE
Q 014154 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR------ETPIKAVAEEPDSFNIYIG 276 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~~i~~~~~sp~~~~l~~~ 276 (430)
.. ..+.....+.|+ +....+|++.+..+-+-+||.+....++....+. ...-.++.|+|+|+.|++-
T Consensus 190 ~A------N~~~~F~t~~F~-P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi 262 (609)
T KOG4227|consen 190 PA------NSGKNFYTAEFH-PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI 262 (609)
T ss_pred ec------CCCccceeeeec-CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence 00 011445677784 2345688899999999999999866555433221 1223678899999988876
Q ss_pred eCCCcEEEEEccCCeE-EeeeeCC-----CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC----------Cc------
Q 014154 277 NGSGDLASVDIRTGKL-LGCFIGK-----CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT----------RQ------ 334 (430)
Q Consensus 277 ~~d~~i~iwd~~~~~~-~~~~~~~-----~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~----------~~------ 334 (430)
-....=.+||+.+.++ +..+... ....+.+++|-.+-. +++|+.+-.|++|.+.. |.
T Consensus 263 RR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~ 341 (609)
T KOG4227|consen 263 RRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMP 341 (609)
T ss_pred hccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCc
Confidence 5555556788877555 3333211 012466777865544 89999999999998742 11
Q ss_pred ---eee--EEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154 335 ---LLS--AVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 335 ---~~~--~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~ 377 (430)
.+. -..++|| ..++..+.|+|...+ ++.+-++.+++|..-..
T Consensus 342 ~~~~i~~~~~VLrGH-RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r~ 389 (609)
T KOG4227|consen 342 SEIFIEKELTVLRGH-RSVPNQVRFSQHNNLLVSSGVENSFKLWSDHRL 389 (609)
T ss_pred hhheecceeEEEecc-cccccceeecCCcceEeccchhhheeccccccC
Confidence 010 0126788 677899999998888 88888999999976543
No 206
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1e-14 Score=129.98 Aligned_cols=277 Identities=14% Similarity=0.135 Sum_probs=181.4
Q ss_pred eeeeeecCCCCCcee-EEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccC
Q 014154 54 VLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK 132 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (430)
+..+.. +|||+|+ |+|...-.|++||+.+-. ..|..|.. ..++.+.+...+- ...+.--.|
T Consensus 54 st~ik~--s~DGqY~lAtG~YKP~ikvydlanLS--LKFERhlD-------ae~V~feiLsDD~-------SK~v~L~~D 115 (703)
T KOG2321|consen 54 STRIKV--SPDGQYLLATGTYKPQIKVYDLANLS--LKFERHLD-------AEVVDFEILSDDY-------SKSVFLQND 115 (703)
T ss_pred cceeEe--cCCCcEEEEecccCCceEEEEcccce--eeeeeccc-------ccceeEEEeccch-------hhheEeecC
Confidence 455666 8899986 557788899999986543 23333211 2333333333222 112211222
Q ss_pred CeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcC
Q 014154 133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212 (430)
Q Consensus 133 g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 212 (430)
..+.+..- .| +-+.+.-...-..++++.-..-|+.++....|+-++++.|+-+..+....
T Consensus 116 R~IefHak----------~G--~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~-------- 175 (703)
T KOG2321|consen 116 RTIEFHAK----------YG--RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS-------- 175 (703)
T ss_pred ceeeehhh----------cC--eeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccccc--------
Confidence 22222210 00 00111111223455665544445555556689999999998877766543
Q ss_pred CcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee------cCC-----CeEEEEecCCCCEEEEEeCCCc
Q 014154 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF------RET-----PIKAVAEEPDSFNIYIGNGSGD 281 (430)
Q Consensus 213 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~-----~i~~~~~sp~~~~l~~~~~d~~ 281 (430)
..++++.. ++-..+|++|+.+|.|..||.+... .+..+.. |.+ .|+++.|+.+|-.+++|+.+|.
T Consensus 176 -~~lN~v~i--n~~hgLla~Gt~~g~VEfwDpR~ks-rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~ 251 (703)
T KOG2321|consen 176 -GELNVVSI--NEEHGLLACGTEDGVVEFWDPRDKS-RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS 251 (703)
T ss_pred -ccceeeee--cCccceEEecccCceEEEecchhhh-hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc
Confidence 56788888 7888899999999999999999743 3444432 222 4999999999999999999999
Q ss_pred EEEEEccCCeEEeeeeCCCCCCeEEEEecCC--CCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccccc
Q 014154 282 LASVDIRTGKLLGCFIGKCSGSIRSIARHPT--LPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV 359 (430)
Q Consensus 282 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 359 (430)
+.|||+++.+++..-.....-+|..+.|.+. +..|++. ....++|||-.+|+....+. . ...+..+++-|++-
T Consensus 252 v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE---p-t~~lND~C~~p~sG 326 (703)
T KOG2321|consen 252 VLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE---P-TSDLNDFCFVPGSG 326 (703)
T ss_pred EEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc---c-cCCcCceeeecCCc
Confidence 9999999998865443322668999999876 3455554 45689999999999988753 1 22368888888876
Q ss_pred c-cccCCCCceEecCCCCC
Q 014154 360 A-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 360 ~-~~~~~d~~i~~~~~~~~ 377 (430)
+ +++..++.+..|-.+.+
T Consensus 327 m~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 327 MFFTANESSKMHTYYIPSL 345 (703)
T ss_pred eEEEecCCCcceeEEcccc
Confidence 6 88888888877766543
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.69 E-value=1.7e-15 Score=125.63 Aligned_cols=202 Identities=11% Similarity=0.135 Sum_probs=160.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCc
Q 014154 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE---KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 238 (430)
..+|+|.+|+++...++++.....|.||...... ...++..|. ..|+.+.| .|..+.|++|+.|..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd---------~~vtgvdW--ap~snrIvtcs~drn 78 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD---------KIVTGVDW--APKSNRIVTCSHDRN 78 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhC---------cceeEEee--cCCCCceeEccCCCC
Confidence 4789999999999999999999999999986544 455555554 67999999 899999999999999
Q ss_pred EEEEECCCCC--cceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEE---eeeeCCCCCCeEEEEecCCC
Q 014154 239 VRLYDTSAQR--RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL---GCFIGKCSGSIRSIARHPTL 313 (430)
Q Consensus 239 i~iwd~~~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~i~~~~~~ 313 (430)
-++|....+. ++...+..++...+++.|+|.++.|++|+....|.+|-++...-- ..++..+.+.|+++.|+|++
T Consensus 79 ayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn 158 (361)
T KOG1523|consen 79 AYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN 158 (361)
T ss_pred ccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence 9999985432 355666678889999999999999999999999999887654321 12222237789999999999
Q ss_pred CeEEEEeCCCcEEEEECC-----C-------------CceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCC
Q 014154 314 PIIASCGLDSYLRFWDIK-----T-------------RQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 314 ~~l~s~~~dg~i~iwd~~-----~-------------~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~ 374 (430)
-+|+.|+.|+..|||..- + |+++..+ . ...+.+..+.|+|+|.. +..+.|..+.+-|.
T Consensus 159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~--~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA--S-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh--c-cCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 999999999999999641 1 1222221 1 23566899999999998 88999999999887
Q ss_pred CCC
Q 014154 375 NDT 377 (430)
Q Consensus 375 ~~~ 377 (430)
...
T Consensus 236 ~~p 238 (361)
T KOG1523|consen 236 AGP 238 (361)
T ss_pred CCC
Confidence 654
No 208
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=8.9e-14 Score=130.11 Aligned_cols=321 Identities=12% Similarity=0.053 Sum_probs=207.2
Q ss_pred CCCceEEEEccCCCCCcceeeeec--CCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC-Ccccceeec-cCCC
Q 014154 22 SLGLIKVIEARGEHGGVPKVVERW--GDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISN-AGDS 97 (430)
Q Consensus 22 ~dg~i~vw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~-~~~~ 97 (430)
-+..+.+|+...+. ....... ..|.-. +.++++ +|.++++|+|..||.|.+|.--. ...-.+... ||.
T Consensus 179 ~~~~~~~~~v~~~~---~~~~~~~~~~~Htf~--~t~~~~--spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH- 250 (792)
T KOG1963|consen 179 HMCKIHIYFVPKHT---KHTSSRDITVHHTFN--ITCVAL--SPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH- 250 (792)
T ss_pred EeeeEEEEEecccc---eeeccchhhhhhccc--ceeEEe--ccccceEEEeccCCcEEEEeccccccccccceEEEec-
Confidence 44567888887741 1111111 124444 344445 78899999999999999996422 111111111 222
Q ss_pred CCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEE
Q 014154 98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS 177 (430)
Q Consensus 98 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l 177 (430)
.+.+.++.+.... ..+++|+..+.+.+|.++... +-|-..-+..|..+.++|++.+.
T Consensus 251 -----~~~V~~L~fS~~G--------~~LlSGG~E~VLv~Wq~~T~~----------kqfLPRLgs~I~~i~vS~ds~~~ 307 (792)
T KOG1963|consen 251 -----HDEVNSLSFSSDG--------AYLLSGGREGVLVLWQLETGK----------KQFLPRLGSPILHIVVSPDSDLY 307 (792)
T ss_pred -----ccccceeEEecCC--------ceEeecccceEEEEEeecCCC----------cccccccCCeeEEEEEcCCCCeE
Confidence 3466666665544 499999999999999987543 34444567899999999999999
Q ss_pred EEEeCCCeEEEEECCCCeeeEeeCCCCCC--CCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe
Q 014154 178 LFGGKGVEVNVWDLDKCEKIWTAKPPPKN--SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD 255 (430)
Q Consensus 178 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 255 (430)
+....|+.|.+....+......+.+.... .+.....+-.+.+++ +|..+.++-.+..|.|.+||+.+... +..+.
T Consensus 308 sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~i--dpr~~~~vln~~~g~vQ~ydl~td~~-i~~~~ 384 (792)
T KOG1963|consen 308 SLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSI--DPRTNSLVLNGHPGHVQFYDLYTDST-IYKLQ 384 (792)
T ss_pred EEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEE--cCCCCceeecCCCceEEEEeccccce-eeeEE
Confidence 99999999999988665554444433221 001111244566777 77777888889999999999987543 33322
Q ss_pred e-----------cCCCeEEEEecCCCCEEEEEe--------CC--CcEEEEEccCCe----EEeeeeCCCCCCeEEEEe-
Q 014154 256 F-----------RETPIKAVAEEPDSFNIYIGN--------GS--GDLASVDIRTGK----LLGCFIGKCSGSIRSIAR- 309 (430)
Q Consensus 256 ~-----------~~~~i~~~~~sp~~~~l~~~~--------~d--~~i~iwd~~~~~----~~~~~~~~~~~~v~~i~~- 309 (430)
. +.-.++.++.+..|.+++|.- .| ..+++|-..... +...+...|...+...++
T Consensus 385 v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~ 464 (792)
T KOG1963|consen 385 VCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFL 464 (792)
T ss_pred EEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEe
Confidence 1 123567788888899998873 22 347788654332 333333323555444444
Q ss_pred cCCCC-eEEEEeCCCcEEEEECCCCce------eeEEE--eeccccceEEeeeccccccccccCCCCceEecCCCCC
Q 014154 310 HPTLP-IIASCGLDSYLRFWDIKTRQL------LSAVF--LKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDT 377 (430)
Q Consensus 310 ~~~~~-~l~s~~~dg~i~iwd~~~~~~------~~~~~--~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~ 377 (430)
+|... ..++++.||.++||-+...+. ..... -.-| ...+.+++|+.||.+++.+.|+.|.+||....
T Consensus 465 ~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~-k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 465 NPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH-KTPITALCFSQDGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred cCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccc-cCcccchhhcCCCcEEEEecCCEEEEecCCCh
Confidence 44433 789999999999998843221 11110 1113 44568999999999999999999999999874
No 209
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.68 E-value=1.6e-13 Score=124.21 Aligned_cols=281 Identities=18% Similarity=0.174 Sum_probs=175.9
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
+-+++-..+|.|.|.|..+. +++.++...... .....+ +|||+++++.+.||.|.++|+.+++.+.+++.
T Consensus 7 l~~V~~~~~~~v~viD~~t~-----~~~~~i~~~~~~--h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~- 76 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATN-----KVVARIPTGGAP--HAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKV- 76 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT------SEEEEEE-STTE--EEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--
T ss_pred EEEEEecCCCEEEEEECCCC-----eEEEEEcCCCCc--eeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEec-
Confidence 34567778899999999987 777777654332 223334 88999999999999999999987774443321
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
+.....++++++|
T Consensus 77 -------------------------------------------------------------------G~~~~~i~~s~DG 89 (369)
T PF02239_consen 77 -------------------------------------------------------------------GGNPRGIAVSPDG 89 (369)
T ss_dssp -------------------------------------------------------------------SSEEEEEEE--TT
T ss_pred -------------------------------------------------------------------CCCcceEEEcCCC
Confidence 2345678889999
Q ss_pred CEEEEEe-CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-CCcEEEEECCCCCcceE
Q 014154 175 KFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 175 ~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~ 252 (430)
++++++. ..+.+.++|.++.+.+..+.......-. ....+..+.. +|....++..-. .+.|.+.|......+..
T Consensus 90 ~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~--~~~Rv~aIv~--s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~ 165 (369)
T PF02239_consen 90 KYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG--PESRVAAIVA--SPGRPEFVVNLKDTGEIWVVDYSDPKNLKV 165 (369)
T ss_dssp TEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT--S---EEEEEE---SSSSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred CEEEEEecCCCceeEeccccccceeecccccccccc--cCCCceeEEe--cCCCCEEEEEEccCCeEEEEEeccccccce
Confidence 9998775 5889999999999888876543211100 1245666666 666665555444 58888889887544333
Q ss_pred EEeecCCCeEEEEecCCCCEEEEE-eCCCcEEEEEccCCeEEeeeeC-------------C-------------------
Q 014154 253 SFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGCFIG-------------K------------------- 299 (430)
Q Consensus 253 ~~~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~-------------~------------------- 299 (430)
.............|+|++++++++ ..++.|-++|..+++.+..+.. |
T Consensus 166 ~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ 245 (369)
T PF02239_consen 166 TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPL 245 (369)
T ss_dssp EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred eeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceeccc
Confidence 333344567889999999988775 4567788888887665443210 0
Q ss_pred ----------------------CCCCeEEEEecCCCCeEEEE----eCCCcEEEEECCCCceeeEEEeeccccceEEeee
Q 014154 300 ----------------------CSGSIRSIARHPTLPIIASC----GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSA 353 (430)
Q Consensus 300 ----------------------~~~~v~~i~~~~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 353 (430)
...+ ..+..||++++|... ...+.|.++|.++.+.+..+ .......+..+.
T Consensus 246 ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i--~~~~~~~~~h~e 322 (369)
T PF02239_consen 246 IGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTI--TPGPGKRVVHME 322 (369)
T ss_dssp EE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-H--HHHHT--EEEEE
T ss_pred ccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEE--eccCCCcEeccE
Confidence 1223 556778999999888 45589999999999777763 222233368999
Q ss_pred ccccccc--cccCCCC-ceEecCCCCCcc
Q 014154 354 FADKEVA--NAAADAP-MLEIQNGNDTQE 379 (430)
Q Consensus 354 ~s~~g~~--~~~~~d~-~i~~~~~~~~~~ 379 (430)
|+++|+. ++.-..+ .|.+||....++
T Consensus 323 f~~dG~~v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 323 FNPDGKEVWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp E-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred ECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence 9999997 5544444 899999988644
No 210
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.68 E-value=4.5e-15 Score=131.16 Aligned_cols=209 Identities=17% Similarity=0.160 Sum_probs=156.3
Q ss_pred ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc
Q 014154 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~ 145 (430)
+.++..+.||.+.|.+- .++....+..| ...+.+-. |+.+. .-++++++||.+.+|+-
T Consensus 76 d~~~i~s~DGkf~il~k-~~rVE~sv~AH--------~~A~~~gR-W~~dG-------tgLlt~GEDG~iKiWSr----- 133 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK-SARVERSISAH--------AAAISSGR-WSPDG-------AGLLTAGEDGVIKIWSR----- 133 (737)
T ss_pred ceEEEEcCCceEEEecc-cchhhhhhhhh--------hhhhhhcc-cCCCC-------ceeeeecCCceEEEEec-----
Confidence 46888899999999974 67766665543 33555444 44433 47899999999999983
Q ss_pred cccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
.|.++.--......|.|++|.|+.+.++.+..+ .+.+=.+.....+...+.|. +-|.++.| ++
T Consensus 134 -----sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~-h~~IKpL~~n~k~i~WkAHD---------GiiL~~~W--~~ 196 (737)
T KOG1524|consen 134 -----SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG-HISIKPLAANSKIIRWRAHD---------GLVLSLSW--ST 196 (737)
T ss_pred -----cchHHHHHhhcCceeEEEEECCCCCceEEecCC-eEEEeecccccceeEEeccC---------cEEEEeec--Cc
Confidence 234443334556889999999988877765544 67777776666666666665 67999999 88
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeE
Q 014154 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR 305 (430)
Q Consensus 226 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 305 (430)
..+++++|++|-..++||... .++..-..|+.+|++++|+|+ ..++.++. ++++ |.....+.|.
T Consensus 197 ~s~lI~sgGED~kfKvWD~~G--~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R------------~~~p~~GSif 260 (737)
T KOG1524|consen 197 QSNIIASGGEDFRFKIWDAQG--ANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTAR------------FSSPRVGSIF 260 (737)
T ss_pred cccceeecCCceeEEeecccC--cccccCChhccceeeeeeccc-cceeeeee-eeee------------ecCCCccceE
Confidence 999999999999999999874 346777779999999999999 56666653 3333 3333367899
Q ss_pred EEEecCCCCeEEEEeCCCcEEEEE
Q 014154 306 SIARHPTLPIIASCGLDSYLRFWD 329 (430)
Q Consensus 306 ~i~~~~~~~~l~s~~~dg~i~iwd 329 (430)
.++||+||..++.|...|.+.+=.
T Consensus 261 nlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 261 NLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred EEEEcCCCceeeccccCceEEEee
Confidence 999999999999999988776543
No 211
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.67 E-value=1.2e-14 Score=128.64 Aligned_cols=233 Identities=12% Similarity=0.101 Sum_probs=150.4
Q ss_pred CceEEEEccCCCCCcceee-eecCCCCCCcceeeee-ecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCC
Q 014154 24 GLIKVIEARGEHGGVPKVV-ERWGDPHSSNCVLAAS-IDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP 101 (430)
Q Consensus 24 g~i~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 101 (430)
..+.+|+...+......+. ..|.+. ...+.+|. +...|.+--|+.|-.-|.|.+.|....+....+..-.. -
T Consensus 144 ~~lyv~~~~g~~~~~~pi~k~~y~gt--~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~----i 217 (636)
T KOG2394|consen 144 RELYVYSYRGAADLSKPIDKREYKGT--SPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERL----I 217 (636)
T ss_pred CeEEEEEccCcchhccchhhhcccCC--CCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhccc----c
Confidence 3678888775311111111 122221 22244442 23355666688888889999999866332222221000 1
Q ss_pred CCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEe
Q 014154 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG 181 (430)
Q Consensus 102 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~ 181 (430)
....++++.|.+... ..++++..+|.+.+++...... ..-.+....+++..+....
T Consensus 218 ~ktsvT~ikWvpg~~-------~~Fl~a~~sGnlyly~~~~~~~-----------------~t~p~~~~~k~~~~f~i~t 273 (636)
T KOG2394|consen 218 NKSSVTCIKWVPGSD-------SLFLVAHASGNLYLYDKEIVCG-----------------ATAPSYQALKDGDQFAILT 273 (636)
T ss_pred cccceEEEEEEeCCC-------ceEEEEEecCceEEeecccccc-----------------CCCCcccccCCCCeeEEee
Confidence 124777888888766 7888888888888886532110 0001111122444443322
Q ss_pred CC-----CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee
Q 014154 182 KG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF 256 (430)
Q Consensus 182 ~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 256 (430)
.- +-+.-|-+- . ..|...+| +|||.+||+.+.||.++|||..+.+ ++..++.
T Consensus 274 ~ksk~~rNPv~~w~~~-----------~---------g~in~f~F--S~DG~~LA~VSqDGfLRvF~fdt~e-Llg~mkS 330 (636)
T KOG2394|consen 274 SKSKKTRNPVARWHIG-----------E---------GSINEFAF--SPDGKYLATVSQDGFLRIFDFDTQE-LLGVMKS 330 (636)
T ss_pred eeccccCCccceeEec-----------c---------ccccceeE--cCCCceEEEEecCceEEEeeccHHH-HHHHHHh
Confidence 11 122222221 1 45788889 8899999999999999999999844 3555554
Q ss_pred cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEec
Q 014154 257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH 310 (430)
Q Consensus 257 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~ 310 (430)
--+...|++|||||+||++|++|..|.||.+...+++..-++| .++|..++|.
T Consensus 331 YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH-kSWVs~VaFD 383 (636)
T KOG2394|consen 331 YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH-KSWVSVVAFD 383 (636)
T ss_pred hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc-ccceeeEeec
Confidence 5578999999999999999999999999999999999999998 9999999998
No 212
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2e-15 Score=131.89 Aligned_cols=288 Identities=16% Similarity=0.175 Sum_probs=199.6
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeee-ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVE-RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
..+++|+.|-.|.+||+..+ +... ...+|...+.-.- |-...+..-+++.+.||.|++=.+.........+.
T Consensus 155 d~l~SgSDD~~vv~WdW~~~-----~~~l~f~SGH~~NvfQaK--FiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~r 227 (559)
T KOG1334|consen 155 DVLASGSDDLQVVVWDWVSG-----SPKLSFESGHCNNVFQAK--FIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKR 227 (559)
T ss_pred ceeeccCccceEEeehhhcc-----Ccccccccccccchhhhh--ccCCCCCcCceeccccCceeeeeeccccceeccee
Confidence 57899999999999999886 3333 3455766643333 32233445699999999999987654332221111
Q ss_pred cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCC---ceEEEEE
Q 014154 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG---TIAFSKV 170 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~---~i~~~~~ 170 (430)
..++.+++..+.+-+... ..|++++.++.+.-.++.....+. .+. -.-.+.. ....++.
T Consensus 228 -----l~~h~g~vhklav~p~sp-------~~f~S~geD~~v~~~Dlr~~~pa~-----~~~-cr~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 228 -----LAPHEGPVHKLAVEPDSP-------KPFLSCGEDAVVFHIDLRQDVPAE-----KFV-CREADEKERVGLYTIAV 289 (559)
T ss_pred -----cccccCccceeeecCCCC-------CcccccccccceeeeeeccCCccc-----eee-eeccCCccceeeeeEec
Confidence 235566777777777665 689999999988877765443211 111 1111122 4667888
Q ss_pred cCC-CCEEEEEeCCCeEEEEECCCCee------eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEE
Q 014154 171 DIS-EKFSLFGGKGVEVNVWDLDKCEK------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (430)
Q Consensus 171 ~~~-~~~l~~~~~d~~i~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (430)
+|. ..++++++.|..+++||.+.-.. +..+-.+. +.-..+..|++++| +.++.-|+++..|-.|+++.
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~h---l~~d~~v~ITgl~Y--sh~~sElLaSYnDe~IYLF~ 364 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHH---LVEDDPVNITGLVY--SHDGSELLASYNDEDIYLFN 364 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcc---ccccCcccceeEEe--cCCccceeeeecccceEEec
Confidence 884 45899999999999999864221 12221111 11123467999999 76777777778898999995
Q ss_pred CCCCC-----------cceE-EEeecC--CCeEEEEe-cCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEE
Q 014154 244 TSAQR-----------RPVM-SFDFRE--TPIKAVAE-EPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIA 308 (430)
Q Consensus 244 ~~~~~-----------~~~~-~~~~~~--~~i~~~~~-sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~ 308 (430)
-..+. ..+. .+++|. ..|..+.| -|...|+++|+.-|.|.||+-.+++.+..+.+. ..-|+||.
T Consensus 365 ~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD-r~VVNCLE 443 (559)
T KOG1334|consen 365 KSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD-RHVVNCLE 443 (559)
T ss_pred cccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc-cceEeccC
Confidence 43211 1122 367774 35777765 688899999999999999999999999999887 56899999
Q ss_pred ecCCCCeEEEEeCCCcEEEEECCCC
Q 014154 309 RHPTLPIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 309 ~~~~~~~l~s~~~dg~i~iwd~~~~ 333 (430)
-+|--+.||++|-|..|+||...+.
T Consensus 444 pHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 444 PHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred CCCCCchhhccCCccceeeecCCcc
Confidence 9999999999999999999987443
No 213
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.65 E-value=5e-14 Score=115.91 Aligned_cols=116 Identities=21% Similarity=0.338 Sum_probs=93.1
Q ss_pred cceeEEEEeecCCCCEEEEE--eCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC---CcEEEEEcc
Q 014154 214 TWFTSAAFLSIDDHRKFVAG--TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIR 288 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~ 288 (430)
..|.+++| +|+++.|++. ..+..|.+||++. . ++..+ +...+..+.|+|+|++|++++.+ |.|.+||.+
T Consensus 60 ~~I~~~~W--sP~g~~favi~g~~~~~v~lyd~~~-~-~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 60 GPIHDVAW--SPNGNEFAVIYGSMPAKVTLYDVKG-K-KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CceEEEEE--CcCCCEEEEEEccCCcccEEEcCcc-c-EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 56999999 8999887554 4677999999973 3 34444 45678899999999999998754 669999999
Q ss_pred CCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeC------CCcEEEEECCCCceeeEE
Q 014154 289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL------DSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 289 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~ 339 (430)
+.+.+..+.. ..++.++|+|+|++|+++.. |+.++||+.. |+.+...
T Consensus 134 ~~~~i~~~~~---~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 134 KKKKISTFEH---SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred CCEEeecccc---CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 9888877754 35789999999999999864 7889999985 7776653
No 214
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=3e-14 Score=133.20 Aligned_cols=192 Identities=10% Similarity=0.017 Sum_probs=132.7
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-C
Q 014154 160 CASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-N 235 (430)
Q Consensus 160 ~~~~~i~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~ 235 (430)
.+...+...+|+|+++.|+..+.+ ..|++||+.+++..... ... .....++| +|+++.|+.++ .
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-~~~---------g~~~~~~w--SPDG~~La~~~~~ 268 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-SFR---------GHNGAPAF--SPDGSRLAFASSK 268 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-cCC---------CccCceeE--CCCCCEEEEEEec
Confidence 345678999999999999987654 36999999887543221 111 12335688 89999888765 6
Q ss_pred CCcEEEE--ECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCC-eEEeeeeCCCCCCeEEEEecC
Q 014154 236 DHQVRLY--DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHP 311 (430)
Q Consensus 236 dg~i~iw--d~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~ 311 (430)
+|.+.|| |+.++. ...+..+...+.+..|+|||+.|+..+ .++...||++... .....+ .+ .. ....|+|
T Consensus 269 ~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~-~~--~~~~~Sp 342 (429)
T PRK01742 269 DGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG-RG--YSAQISA 342 (429)
T ss_pred CCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC-CC--CCccCCC
Confidence 7765555 665533 455666767788999999999877655 5678888876532 222223 33 33 4578999
Q ss_pred CCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCC
Q 014154 312 TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 312 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~ 375 (430)
+|++|+..+.++ +.+||+.+++.... .... ....++|+|||++ ++++.++...+|...
T Consensus 343 DG~~ia~~~~~~-i~~~Dl~~g~~~~l--t~~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 343 DGKTLVMINGDN-VVKQDLTSGSTEVL--SSTF---LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CCCEEEEEcCCC-EEEEECCCCCeEEe--cCCC---CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 999998887765 66699998876532 1121 1357889999998 777788888877653
No 215
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=3.6e-15 Score=132.09 Aligned_cols=209 Identities=14% Similarity=0.264 Sum_probs=157.5
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcE
Q 014154 160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (430)
Q Consensus 160 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 239 (430)
.|.+.|.|+.|+.+|.+|++|+.|-.+.|||.-..+.+..+... |...|.++.|.|..+.+++++|..|..|
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~Tg--------HtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTG--------HTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecc--------cccceeEEeeeccCCCeEEEeccCcceE
Confidence 67899999999999999999999999999999877776665432 3477999999877788899999999999
Q ss_pred EEEECCC---------CCcceEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeE-------Ee---eeeCC
Q 014154 240 RLYDTSA---------QRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKL-------LG---CFIGK 299 (430)
Q Consensus 240 ~iwd~~~---------~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~-------~~---~~~~~ 299 (430)
+++|+.. ...+...+..|...|.-|+-.|++ +.+.++++||+|+-||++.... .. .+...
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 9999985 233456667788899999999998 8899999999999999986321 11 11111
Q ss_pred CCCCeEEEEecCCC-CeEEEEeCCCcEEEEECCC--------Cc----------eeeEEEeecccc----------ceEE
Q 014154 300 CSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKT--------RQ----------LLSAVFLKQHLN----------EVVF 350 (430)
Q Consensus 300 ~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~~--------~~----------~~~~~~~~~~~~----------~~v~ 350 (430)
--...++..+|.. .+|+.|+.|-..++||.+. +. ++.- +..+|.. ..++
T Consensus 200 -lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~y-f~p~hlkn~~gn~~~~~~~~t 277 (758)
T KOG1310|consen 200 -LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRY-FSPGHLKNSQGNLDRYITCCT 277 (758)
T ss_pred -hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhhe-ecCccccCcccccccceeeeE
Confidence 2356788999966 5789999999999999421 11 1222 2334421 1256
Q ss_pred eeeccccccc-cccCCCCceEecCCCCCc
Q 014154 351 DSAFADKEVA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 351 ~~~~s~~g~~-~~~~~d~~i~~~~~~~~~ 378 (430)
-+.|+|+|.- +..-....|++|+.+..+
T Consensus 278 ~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 278 YVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred EEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 7899999986 544455678888876643
No 216
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.61 E-value=5.7e-13 Score=120.67 Aligned_cols=294 Identities=12% Similarity=0.083 Sum_probs=171.6
Q ss_pred ceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEee-cCCeEEEecCCCCcccceeecc
Q 014154 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
.+++++.||.|.++|+.+. +++.++..... ...+.+ +|||++++++. ..+.+.|+|..+.+++..+...
T Consensus 50 ~~yv~~rdg~vsviD~~~~-----~~v~~i~~G~~---~~~i~~--s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 50 YLYVANRDGTVSVIDLATG-----KVVATIKVGGN---PRGIAV--SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp EEEEEETTSEEEEEETTSS-----SEEEEEE-SSE---EEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred EEEEEcCCCeEEEEECCcc-----cEEEEEecCCC---cceEEE--cCCCCEEEEEecCCCceeEeccccccceeecccc
Confidence 4677788999999999997 67777764333 344445 68899998865 6899999999999988887652
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEcc-CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~ 173 (430)
.... ......+.++...+... .++.+.. .+.+.+.+ ... ...+..-.+..........|+|+
T Consensus 120 ~~~~-~~~~~Rv~aIv~s~~~~--------~fVv~lkd~~~I~vVd--y~d------~~~~~~~~i~~g~~~~D~~~dpd 182 (369)
T PF02239_consen 120 GMPV-DGPESRVAAIVASPGRP--------EFVVNLKDTGEIWVVD--YSD------PKNLKVTTIKVGRFPHDGGFDPD 182 (369)
T ss_dssp EE-T-TTS---EEEEEE-SSSS--------EEEEEETTTTEEEEEE--TTT------SSCEEEEEEE--TTEEEEEE-TT
T ss_pred cccc-cccCCCceeEEecCCCC--------EEEEEEccCCeEEEEE--ecc------ccccceeeecccccccccccCcc
Confidence 1100 00223444444433322 3444444 35554443 222 12333334445677888999999
Q ss_pred CCEEEEE-eCCCeEEEEECCCCeeeEeeCCCCCC----CCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC
Q 014154 174 EKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKN----SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (430)
Q Consensus 174 ~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (430)
+++++.+ ..++.|.++|..+++.+..+...... ...+.|+.. ...|.....+...++.-....+.+||....+
T Consensus 183 gry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~--g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk 260 (369)
T PF02239_consen 183 GRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGF--GPVWATSGLGYFAIPLIGTDPVSVHDDYAWK 260 (369)
T ss_dssp SSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTT--EEEEEEEBSSSSEEEEEE--TTT-STTTBTS
T ss_pred cceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCc--ceEEeeccccceecccccCCccccchhhcCe
Confidence 9988765 45678999999998877655432110 011111111 1112112223333333333466678888744
Q ss_pred cceEEEeecCCCeEEEEecCCCCEEEEE----eCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCC--
Q 014154 249 RPVMSFDFRETPIKAVAEEPDSFNIYIG----NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD-- 322 (430)
Q Consensus 249 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d-- 322 (430)
.+..+.....+ ..+..+|+++++++. ...+.|.++|.++.+.+..+.......+..+.|+++|+++..+..+
T Consensus 261 -vv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 261 -VVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp -EEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred -EEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCC
Confidence 57888876666 778889999999998 4458999999999988888764313358999999999976655443
Q ss_pred CcEEEEECCCCceeeEEE
Q 014154 323 SYLRFWDIKTRQLLSAVF 340 (430)
Q Consensus 323 g~i~iwd~~~~~~~~~~~ 340 (430)
+.|.|||..+.+.+..+.
T Consensus 339 ~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 339 GAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp TEEEEEETTTTEEEEEEE
T ss_pred CEEEEEECCCcEEEEEEE
Confidence 369999999999999864
No 217
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=8.7e-13 Score=111.46 Aligned_cols=252 Identities=13% Similarity=0.097 Sum_probs=165.2
Q ss_pred eeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCe
Q 014154 55 LAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGK 134 (430)
Q Consensus 55 ~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 134 (430)
-.++| ++.-..+|++..|-+|++|+-.. +....++. .....+.++.|-+... ..++.+.. +-
T Consensus 102 r~~aW--hqH~~~fava~nddvVriy~kss-t~pt~Lks-------~sQrnvtclawRPlsa-------selavgCr-~g 163 (445)
T KOG2139|consen 102 RGVAW--HQHIIAFAVATNDDVVRIYDKSS-TCPTKLKS-------VSQRNVTCLAWRPLSA-------SELAVGCR-AG 163 (445)
T ss_pred eeEee--chhhhhhhhhccCcEEEEeccCC-CCCceecc-------hhhcceeEEEeccCCc-------ceeeeeec-ce
Confidence 34555 44444578899999999999755 44444443 2346788888877665 34555554 45
Q ss_pred eEEEEeeecCc----cccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEeeCCCCCCCCC
Q 014154 135 ASMRSIEVTKV----SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLG 209 (430)
Q Consensus 135 ~~v~~~~~~~~----~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~ 209 (430)
+.+|.....-. ..+.......++.......|+++.|++++..+++++. +..|.|||.+++..+.-....
T Consensus 164 IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g------ 237 (445)
T KOG2139|consen 164 ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG------ 237 (445)
T ss_pred eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC------
Confidence 78898764432 1122233344444444578999999999999998875 567999999987765433111
Q ss_pred CcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC
Q 014154 210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (430)
Q Consensus 210 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 289 (430)
...+.-+.| +||+.+|+.++.|+..++|....... ........+.|...+|+|+|++|+.... +.=++|.+..
T Consensus 238 ---lgg~slLkw--SPdgd~lfaAt~davfrlw~e~q~wt-~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f 310 (445)
T KOG2139|consen 238 ---LGGFSLLKW--SPDGDVLFAATCDAVFRLWQENQSWT-KERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTF 310 (445)
T ss_pred ---CCceeeEEE--cCCCCEEEEecccceeeeehhcccce-ecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEee
Confidence 155888999 99999999999999999997665332 2223334468999999999988776543 3334554431
Q ss_pred Ce---------------EEeeee------C--CCCCCeEEEEecCCCCeEEEEeCCC--------cEEEEECCCCceee
Q 014154 290 GK---------------LLGCFI------G--KCSGSIRSIARHPTLPIIASCGLDS--------YLRFWDIKTRQLLS 337 (430)
Q Consensus 290 ~~---------------~~~~~~------~--~~~~~v~~i~~~~~~~~l~s~~~dg--------~i~iwd~~~~~~~~ 337 (430)
.. ++..+. + -..+++.+++|.|.|.+|++.-..+ .|.+||.+..-.+.
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ve 389 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVE 389 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceE
Confidence 10 011110 1 0145789999999999999875433 46778876544443
No 218
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.61 E-value=5.3e-15 Score=137.16 Aligned_cols=268 Identities=10% Similarity=0.067 Sum_probs=196.0
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
-.++||+.|-.+|||..+++ .++....+|.+.++-++.+.. ..++|+++.|..|++|.+.++.++..+.+|
T Consensus 203 ~~Iitgsdd~lvKiwS~et~-----~~lAs~rGhs~ditdlavs~~----n~~iaaaS~D~vIrvWrl~~~~pvsvLrgh 273 (1113)
T KOG0644|consen 203 RYIITGSDDRLVKIWSMETA-----RCLASCRGHSGDITDLAVSSN----NTMIAAASNDKVIRVWRLPDGAPVSVLRGH 273 (1113)
T ss_pred ceEeecCccceeeeeeccch-----hhhccCCCCccccchhccchh----hhhhhhcccCceEEEEecCCCchHHHHhcc
Confidence 46899999999999998887 788899999999888887763 347899999999999999999999888774
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
.+.++++.+.+.. +.+.+|++++|+..+.+.... -+-.....+..+.++.|-.++
T Consensus 274 --------tgavtaiafsP~~------------sss~dgt~~~wd~r~~~~~y~-----prp~~~~~~~~~~s~~~~~~~ 328 (1113)
T KOG0644|consen 274 --------TGAVTAIAFSPRA------------SSSDDGTCRIWDARLEPRIYV-----PRPLKFTEKDLVDSILFENNG 328 (1113)
T ss_pred --------ccceeeeccCccc------------cCCCCCceEeccccccccccC-----CCCCCcccccceeeeeccccc
Confidence 4577777765432 467788888888764432000 000011122445566677778
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE
Q 014154 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 254 (430)
..+++++.|+.-..|.+..... +. ..+.-+.+. +....+.+++-.+..+++|++.++. ..+.+
T Consensus 329 ~~f~Tgs~d~ea~n~e~~~l~~------~~---------~~lif~t~s-sd~~~~~~~ar~~~~~~vwnl~~g~-l~H~l 391 (1113)
T KOG0644|consen 329 DRFLTGSRDGEARNHEFEQLAW------RS---------NLLIFVTRS-SDLSSIVVTARNDHRLCVWNLYTGQ-LLHNL 391 (1113)
T ss_pred cccccccCCcccccchhhHhhh------hc---------cceEEEecc-ccccccceeeeeeeEeeeeecccch-hhhhh
Confidence 8889999999888877643111 00 011111121 1122466777788889999999976 47888
Q ss_pred eecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCC
Q 014154 255 DFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 255 ~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~ 333 (430)
.+|...+..+.++|-. ....+++.||...|||+-.|.+++.+... ...+..-+||++|..++....-|.++|.....+
T Consensus 392 ~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 392 MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred cccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEeccCCC
Confidence 9999999999999965 45568899999999999999887766544 456777899999999888888899999876544
Q ss_pred c
Q 014154 334 Q 334 (430)
Q Consensus 334 ~ 334 (430)
+
T Consensus 471 ~ 471 (1113)
T KOG0644|consen 471 K 471 (1113)
T ss_pred c
Confidence 3
No 219
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.60 E-value=6.8e-14 Score=115.12 Aligned_cols=148 Identities=18% Similarity=0.264 Sum_probs=107.4
Q ss_pred EEEEeecCCCCEEEEEeC----------CCcEEEEECCCCCcceEEEeec-CCCeEEEEecCCCCEEEEE--eCCCcEEE
Q 014154 218 SAAFLSIDDHRKFVAGTN----------DHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIG--NGSGDLAS 284 (430)
Q Consensus 218 ~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~--~~d~~i~i 284 (430)
.+.| +++|..|++-.. -+...+|.++....+...+... .++|.+++|+|+++.|++. ..+..|.+
T Consensus 10 ~~~W--~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 10 KLHW--QPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEe--cccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 3455 777776554332 2345566664434455555543 4579999999999887654 35679999
Q ss_pred EEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCC---CcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-
Q 014154 285 VDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA- 360 (430)
Q Consensus 285 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~- 360 (430)
||++ ++.+..+. ...+..+.|+|+|++|++++.+ |.|.+||+++.+.+.... | . .+..++|+|||++
T Consensus 88 yd~~-~~~i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---~-~-~~t~~~WsPdGr~~ 158 (194)
T PF08662_consen 88 YDVK-GKKIFSFG---TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE---H-S-DATDVEWSPDGRYL 158 (194)
T ss_pred EcCc-ccEeEeec---CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc---c-C-cEEEEEEcCCCCEE
Confidence 9996 66666665 3577899999999999998754 669999999888887632 3 2 2589999999999
Q ss_pred cccC------CCCceEecCCCC
Q 014154 361 NAAA------DAPMLEIQNGND 376 (430)
Q Consensus 361 ~~~~------~d~~i~~~~~~~ 376 (430)
+++. .|+.++||+...
T Consensus 159 ~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 159 ATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEEEeccceeccccEEEEEecC
Confidence 5544 378899999865
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=9.7e-13 Score=122.79 Aligned_cols=169 Identities=11% Similarity=0.071 Sum_probs=113.1
Q ss_pred EEEEcCCCCEEEEE-eCCC--eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC-Cc--EE
Q 014154 167 FSKVDISEKFSLFG-GKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-HQ--VR 240 (430)
Q Consensus 167 ~~~~~~~~~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~--i~ 240 (430)
.+.|+|+++.|+.. +.+| .|++||+.+++....... . ..+....| +|+++.|+..+.+ +. |.
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~-~---------~~~~~~~w--SPDG~~I~f~s~~~g~~~Iy 314 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG-R---------SNNTEPTW--FPDSQNLAYTSDQAGRPQVY 314 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC-C---------CCcCceEE--CCCCCEEEEEeCCCCCceEE
Confidence 36789999888765 3344 589999987765432222 1 33567788 8999988777654 44 55
Q ss_pred EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC---CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 317 (430)
++|+.++. ...+..+........|+|||++|+..+.+ ..|.+||+.+++.. .+... .......|+|||++|+
T Consensus 315 ~~d~~~g~--~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~SpDG~~i~ 389 (429)
T PRK03629 315 KVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPSIAPNGTMVI 389 (429)
T ss_pred EEECCCCC--eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC--CCCCCceECCCCCEEE
Confidence 55666543 34444444456678999999999876644 35888999888653 33322 2335678999999999
Q ss_pred EEeCCCc---EEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154 318 SCGLDSY---LRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 318 s~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~ 356 (430)
.++.++. ++++++. |+.... +.++ ...+..++|+|
T Consensus 390 ~~s~~~~~~~l~~~~~~-G~~~~~--l~~~-~~~~~~p~Wsp 427 (429)
T PRK03629 390 YSSSQGMGSVLNLVSTD-GRFKAR--LPAT-DGQVKFPAWSP 427 (429)
T ss_pred EEEcCCCceEEEEEECC-CCCeEE--CccC-CCCcCCcccCC
Confidence 9987764 6777874 555555 4444 34467888887
No 221
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=6.5e-13 Score=110.42 Aligned_cols=178 Identities=15% Similarity=0.194 Sum_probs=131.8
Q ss_pred CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecC--CCe
Q 014154 184 VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE--TPI 261 (430)
Q Consensus 184 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~i 261 (430)
+.|.|||-...+++.++.-. ..|.++.+ ....|++. ..+.|.||...+.-+.++.+.... ..+
T Consensus 75 NkviIWDD~k~~~i~el~f~----------~~I~~V~l----~r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGl 139 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFN----------SEIKAVKL----RRDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGL 139 (346)
T ss_pred ceEEEEecccCcEEEEEEec----------cceeeEEE----cCCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCce
Confidence 47999996666666665543 56889998 34456654 467899999985433355444322 223
Q ss_pred EEEEecCCCCEEEE-EeCCCcEEEEEccCCeE--EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCc-EEEEECCCCceee
Q 014154 262 KAVAEEPDSFNIYI-GNGSGDLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPIIASCGLDSY-LRFWDIKTRQLLS 337 (430)
Q Consensus 262 ~~~~~sp~~~~l~~-~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~ 337 (430)
.+++-+.+..+|+. |-.-|.|+|-|+...+. ...+.+| .+.|.+++++.+|.+|||+|..|+ |||||..+|..+.
T Consensus 140 C~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH-~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~ 218 (346)
T KOG2111|consen 140 CSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAH-DSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQ 218 (346)
T ss_pred EeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcc-cCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEee
Confidence 33333333344443 33559999999987665 4677888 999999999999999999999996 8999999999999
Q ss_pred EEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCCc
Q 014154 338 AVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 338 ~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~ 378 (430)
.+ -+|-..+.+.+++|||+..+ +++++-|+++||......
T Consensus 219 E~-RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 219 EL-RRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ee-ecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 97 34555667899999999999 888899999999887643
No 222
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.59 E-value=4.8e-13 Score=111.65 Aligned_cols=271 Identities=14% Similarity=0.099 Sum_probs=172.1
Q ss_pred CCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~ 141 (430)
+|+|+|+|+.+.- .+.|-|..+-+....+... +.|..+.| ..+.. -.+.....++.+.+|++.
T Consensus 17 Sp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl---------dki~yieW-~ads~------~ilC~~yk~~~vqvwsl~ 79 (447)
T KOG4497|consen 17 SPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL---------DKIVYIEW-KADSC------HILCVAYKDPKVQVWSLV 79 (447)
T ss_pred CCCCCeeeeeeee-EEEEeccchhhHHHHHHHH---------HHhhheee-eccce------eeeeeeeccceEEEEEee
Confidence 8899999998765 7888888877766655442 34443443 33321 244556778899999986
Q ss_pred ecCccccCCCcceEEeeecCCCceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEE
Q 014154 142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS-LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAA 220 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 220 (430)
..+- .-++ + .....+..+.|+|+|+.| .+...+-.|.+|.+.+......-.. . ..+..++
T Consensus 80 Qpew-------~ckI-d-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p-K---------~~~kg~~ 140 (447)
T KOG4497|consen 80 QPEW-------YCKI-D-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP-K---------TNVKGYA 140 (447)
T ss_pred ccee-------EEEe-c-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccc-c---------cCceeEE
Confidence 5431 1111 1 234678899999999655 5566788999999987655432211 1 2356677
Q ss_pred EeecCCCCEEEEEeC------------------------------------CCcEEEEECCCCCcceEEEeecCCCeEEE
Q 014154 221 FLSIDDHRKFVAGTN------------------------------------DHQVRLYDTSAQRRPVMSFDFRETPIKAV 264 (430)
Q Consensus 221 ~~~~~~~~~l~s~~~------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~ 264 (430)
| +|+|++.+.++. +..+.+||.--..+ +.... -.-.+..+
T Consensus 141 f--~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk-v~aYe-~~lG~k~v 216 (447)
T KOG4497|consen 141 F--HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK-VYAYE-RGLGLKFV 216 (447)
T ss_pred E--CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe-eeeee-eccceeEE
Confidence 7 777777665543 12344555332111 12222 22578899
Q ss_pred EecCCCCEEEEEeCCCcEEEEEccCCeEEe--------------------------------------------------
Q 014154 265 AEEPDSFNIYIGNGSGDLASVDIRTGKLLG-------------------------------------------------- 294 (430)
Q Consensus 265 ~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~-------------------------------------------------- 294 (430)
+|+|.+++|++|+.|+.+|+-+--+-+...
T Consensus 217 ~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~Y 296 (447)
T KOG4497|consen 217 EWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIY 296 (447)
T ss_pred EeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhh
Confidence 999999999999999998875422211110
Q ss_pred ----------eeeC-----CCCCCeEEEEecCCCCeEEEEeC--CCcEEEEECCCCceeeEEEeeccccceEEeeecccc
Q 014154 295 ----------CFIG-----KCSGSIRSIARHPTLPIIASCGL--DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK 357 (430)
Q Consensus 295 ----------~~~~-----~~~~~v~~i~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 357 (430)
.++. .....+.-++|++|..+++|-.. -+.+-+||++..+....+.. ...|....|.|.
T Consensus 297 E~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ----k~piraf~WdP~ 372 (447)
T KOG4497|consen 297 EQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ----KHPIRAFEWDPG 372 (447)
T ss_pred hhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh----ccceeEEEeCCC
Confidence 0000 01235677999999999988753 35799999998777665321 233688889998
Q ss_pred ccc-cccCCCCceEecCCCC
Q 014154 358 EVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 358 g~~-~~~~~d~~i~~~~~~~ 376 (430)
... +.......+++|....
T Consensus 373 ~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 373 RPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred CceEEEEcCCceEEEEcCCC
Confidence 766 5555566688887644
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.59 E-value=2.8e-15 Score=130.16 Aligned_cols=219 Identities=18% Similarity=0.194 Sum_probs=171.2
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCC
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 203 (430)
..++.++..|.+..++..... ..+.+.-...|.++.|-.+.+++|++-.. .++|||- .|..++.++.+
T Consensus 142 rhlllgGrKGHlAa~Dw~t~~----------L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~-y~yvYD~-~GtElHClk~~ 209 (545)
T KOG1272|consen 142 RHLLLGGRKGHLAAFDWVTKK----------LHFEINVMETVRDVTFLHNEQFFAVAQKK-YVYVYDN-NGTELHCLKRH 209 (545)
T ss_pred cEEEecCCccceeeeecccce----------eeeeeehhhhhhhhhhhcchHHHHhhhhc-eEEEecC-CCcEEeehhhc
Confidence 467777777777666543221 12233334678888998888888876554 8999996 46666666554
Q ss_pred CCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEE
Q 014154 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA 283 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~ 283 (430)
..|..+.| -|..-+|++++..|.++.-|+.+++ .+..+....+.+..++-+|-+..+-+|...|+|.
T Consensus 210 ----------~~v~rLeF--LPyHfLL~~~~~~G~L~Y~DVS~Gk-lVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVS 276 (545)
T KOG1272|consen 210 ----------IRVARLEF--LPYHFLLVAASEAGFLKYQDVSTGK-LVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVS 276 (545)
T ss_pred ----------Cchhhhcc--cchhheeeecccCCceEEEeechhh-hhHHHHccCCccchhhcCCccceEEEcCCCceEE
Confidence 56888999 5778899999999999999999977 4777777778899999999999999999999999
Q ss_pred EEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccccccccc
Q 014154 284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAA 363 (430)
Q Consensus 284 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~ 363 (430)
+|.....+++..+..| .++|.+|++.++|.|++|+|.|..++|||++....+.++.. ......+++|..|.++.
T Consensus 277 lWSP~skePLvKiLcH-~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t----p~~a~~ls~SqkglLA~- 350 (545)
T KOG1272|consen 277 LWSPNSKEPLVKILCH-RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT----PHPASNLSLSQKGLLAL- 350 (545)
T ss_pred ecCCCCcchHHHHHhc-CCCcceEEECCCCcEEeecccccceeEeeeccccccceeec----CCCccccccccccceee-
Confidence 9999999998888888 99999999999999999999999999999998887777533 22346778887766533
Q ss_pred CCCCceEecC
Q 014154 364 ADAPMLEIQN 373 (430)
Q Consensus 364 ~~d~~i~~~~ 373 (430)
+....+.||.
T Consensus 351 ~~G~~v~iw~ 360 (545)
T KOG1272|consen 351 SYGDHVQIWK 360 (545)
T ss_pred ecCCeeeeeh
Confidence 3345677775
No 224
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.7e-13 Score=115.56 Aligned_cols=258 Identities=11% Similarity=0.047 Sum_probs=186.3
Q ss_pred CCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEE
Q 014154 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG 180 (430)
Q Consensus 101 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~ 180 (430)
.|.+.|.++.+.+.. ..+++++.+-.+.+|.+...- ....-++|.+-...|...|.|++|+....++++|
T Consensus 54 ~H~GCiNAlqFS~N~--------~~L~SGGDD~~~~~W~~de~~--~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 54 EHTGCINALQFSHND--------RFLASGGDDMHGRVWNVDELM--VRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred hhccccceeeeccCC--------eEEeecCCcceeeeechHHHH--hhcCCCCceeccCccccceEEEEEccCCeeEecC
Confidence 355677778877663 488999999999999975321 1111246777777778899999999999999999
Q ss_pred eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe--ecC
Q 014154 181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD--FRE 258 (430)
Q Consensus 181 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~ 258 (430)
..+++|.+.|+++.+.+..+...... +.|..+.. +|..+.|++.+.++.|.+||.+....+...+- ...
T Consensus 124 ~~~~~VI~HDiEt~qsi~V~~~~~~~-------~~VY~m~~--~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~ 194 (609)
T KOG4227|consen 124 ERWGTVIKHDIETKQSIYVANENNNR-------GDVYHMDQ--HPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSG 194 (609)
T ss_pred CCcceeEeeecccceeeeeecccCcc-------cceeeccc--CCCCceEEEEecCceEEEEeccCCCCCCceeeecCCC
Confidence 99999999999998888776543311 45777877 78889999999999999999997543333222 223
Q ss_pred CCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeE-EeeeeC---CC--CCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154 259 TPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKL-LGCFIG---KC--SGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 259 ~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~-~~~~~~---~~--~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
.....+.|+|.. .+|++.+..+-+-+||.+..+. +..+.+ -. ...-.++.|+|+|..|.+--.-..-.+||+-
T Consensus 195 ~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~ 274 (609)
T KOG4227|consen 195 KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI 274 (609)
T ss_pred ccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence 567788899976 6778888888899999986542 222221 10 1122567899999988887666667788987
Q ss_pred CCceeeEEEee----cc-ccceEEeeeccccccccccCCCCceEecCCCCCc
Q 014154 332 TRQLLSAVFLK----QH-LNEVVFDSAFADKEVANAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 332 ~~~~~~~~~~~----~~-~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~~ 378 (430)
+.++.. +... |. ....+-+++|..|-.+++|+++-.|++|..+...
T Consensus 275 S~R~~V-~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 275 SQRCFV-LKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRAN 325 (609)
T ss_pred ccccee-EeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCc
Confidence 754432 2122 11 1234678899988888999999999999988654
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=5.4e-13 Score=110.87 Aligned_cols=159 Identities=15% Similarity=0.164 Sum_probs=117.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEE-EeCCCcE
Q 014154 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLD-KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDHQV 239 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~dg~i 239 (430)
..+|.++.+.+ ..|++.- ++.|+||... +.+.++.+..... +..+.++.- ..+..+||. |-.-|.|
T Consensus 94 ~~~I~~V~l~r--~riVvvl-~~~I~VytF~~n~k~l~~~et~~N-------PkGlC~~~~--~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 94 NSEIKAVKLRR--DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSN-------PKGLCSLCP--TSNKSLLAFPGFKTGQV 161 (346)
T ss_pred ccceeeEEEcC--CeEEEEe-cCeEEEEEcCCChhheeeeecccC-------CCceEeecC--CCCceEEEcCCCccceE
Confidence 35666666653 4555444 5589999997 4555555543321 122222222 223334443 4456899
Q ss_pred EEEECCCCCc-ceEEEeecCCCeEEEEecCCCCEEEEEeCCCc-EEEEEccCCeEEeeee-CCCCCCeEEEEecCCCCeE
Q 014154 240 RLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-LASVDIRTGKLLGCFI-GKCSGSIRSIARHPTLPII 316 (430)
Q Consensus 240 ~iwd~~~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l 316 (430)
+|-|+..... +-..+..|.+.|.|++++.+|..+|+++..|+ |||||.++|..+.+++ |...+.|++++|||+..+|
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~L 241 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWL 241 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEE
Confidence 9999986443 34788999999999999999999999999987 8999999999999987 3335689999999999999
Q ss_pred EEEeCCCcEEEEECCC
Q 014154 317 ASCGLDSYLRFWDIKT 332 (430)
Q Consensus 317 ~s~~~dg~i~iwd~~~ 332 (430)
+++|.-|+|.||.++.
T Consensus 242 avsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 242 AVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEcCCCeEEEEEeec
Confidence 9999999999998864
No 226
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.58 E-value=1.9e-13 Score=113.64 Aligned_cols=244 Identities=10% Similarity=0.052 Sum_probs=174.9
Q ss_pred CceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCC
Q 014154 104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG 183 (430)
Q Consensus 104 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 183 (430)
.+|.+..+.... ..++.+...+.+.|+....... -....... .|...|+.+.|+|..+.|++++.|
T Consensus 11 ~pitchAwn~dr--------t~iAv~~~~~evhiy~~~~~~~-----w~~~htls-~Hd~~vtgvdWap~snrIvtcs~d 76 (361)
T KOG1523|consen 11 EPITCHAWNSDR--------TQIAVSPNNHEVHIYSMLGADL-----WEPAHTLS-EHDKIVTGVDWAPKSNRIVTCSHD 76 (361)
T ss_pred CceeeeeecCCC--------ceEEeccCCceEEEEEecCCCC-----ceeceehh-hhCcceeEEeecCCCCceeEccCC
Confidence 366665554433 4788888889999998753320 11223333 467889999999999999999999
Q ss_pred CeEEEEECCC-Cee--eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc---eEEEeec
Q 014154 184 VEVNVWDLDK-CEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---VMSFDFR 257 (430)
Q Consensus 184 ~~i~~~d~~~-~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~ 257 (430)
..-++|.... +.- ...+..+ ...++++.| +|.++.|++|+.-..|.||-+.....- .+.-+.+
T Consensus 77 rnayVw~~~~~~~WkptlvLlRi---------NrAAt~V~W--sP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPi 145 (361)
T KOG1523|consen 77 RNAYVWTQPSGGTWKPTLVLLRI---------NRAATCVKW--SPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPI 145 (361)
T ss_pred CCccccccCCCCeeccceeEEEe---------ccceeeEee--cCcCceEEeccCccEEEEEEEecccceehhhhhCCcc
Confidence 9999999843 321 2222222 256899999 899999999999999999988753321 1122335
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEEcc------------------CCeEEeeeeCCCCCCeEEEEecCCCCeEEEE
Q 014154 258 ETPIKAVAEEPDSFNIYIGNGSGDLASVDIR------------------TGKLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 258 ~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~------------------~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~ 319 (430)
.+.|+++.|+|++-+|++|+.|+..++|..- -|+++.++... .+.|..+.|+|+|..|+-.
T Consensus 146 rStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~-ggwvh~v~fs~sG~~lawv 224 (361)
T KOG1523|consen 146 RSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS-GGWVHGVLFSPSGNRLAWV 224 (361)
T ss_pred ccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC-CCceeeeEeCCCCCEeeEe
Confidence 6789999999999999999999999999642 13344455333 6799999999999999999
Q ss_pred eCCCcEEEEECCCCc-eeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154 320 GLDSYLRFWDIKTRQ-LLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 320 ~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~ 376 (430)
+.|..+.+-|..... .+..+ ... .-...++.|-.+...+.++.|..=.+|....
T Consensus 225 ~Hds~v~~~da~~p~~~v~~~--~~~-~lP~ls~~~ise~~vv~ag~~c~P~lf~~~~ 279 (361)
T KOG1523|consen 225 GHDSTVSFVDAAGPSERVQSV--ATA-QLPLLSVSWISENSVVAAGYDCGPVLFVTDE 279 (361)
T ss_pred cCCCceEEeecCCCchhccch--hhc-cCCceeeEeecCCceeecCCCCCceEEEecc
Confidence 999999999987654 33332 222 2335788888888888888885555554433
No 227
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=4.3e-13 Score=114.39 Aligned_cols=207 Identities=12% Similarity=0.062 Sum_probs=150.3
Q ss_pred eeEEeecCCeEEEecCCCCcc----cceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccC--CeeEEEEe
Q 014154 67 LLAVARKNGLTDILNPLNGDL----RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK--GKASMRSI 140 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~v~~~ 140 (430)
.|+++-.+|.+.+|....+.. +..+.. ...+..+.-.+... ..+++|+.. ..+.+|++
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~---------g~g~~~~r~~~~~p-------~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLAT---------GPGLYDVRQTDTDP-------YIVATGGKENINELKIWDL 180 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeec---------CCceeeeccCCCCC-------ceEecCchhcccceeeeec
Confidence 577888899999999875442 111111 12333333333333 456667877 78899998
Q ss_pred eecCccccCCCcceEEeeecC----------CCceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCe-eeEeeCCCCCCC
Q 014154 141 EVTKVSAESSCSTVKSWNVCA----------SGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNS 207 (430)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~~~~----------~~~i~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~ 207 (430)
..+ .++|.... .-.++.+.|-+. ...|++++.-+.+++||...++ ++..+....
T Consensus 181 e~~----------~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E--- 247 (412)
T KOG3881|consen 181 EQS----------KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLE--- 247 (412)
T ss_pred ccc----------eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecccc---
Confidence 644 34454321 123567888876 7899999999999999998654 344443332
Q ss_pred CCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEc
Q 014154 208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (430)
Q Consensus 208 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 287 (430)
..++++.. .|++++|++|..-+.+..||++.+..+...+.+-.+.|++|..+|..++|++++-|..|||+|+
T Consensus 248 ------~~is~~~l--~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 248 ------NPISSTGL--TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred ------Ccceeeee--cCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 56888888 7899999999999999999999977655668888899999999999999999999999999999
Q ss_pred cCCeEEeeeeCCCCCCeEEEEecCC
Q 014154 288 RTGKLLGCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 288 ~~~~~~~~~~~~~~~~v~~i~~~~~ 312 (430)
.+.+++....- ...+++|-+.++
T Consensus 320 ktrkll~kvYv--Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 320 KTRKLLHKVYV--KSRLTFILLRDD 342 (412)
T ss_pred ccchhhhhhhh--hccccEEEecCC
Confidence 99777655443 345666666443
No 228
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.55 E-value=2e-12 Score=108.65 Aligned_cols=264 Identities=12% Similarity=0.106 Sum_probs=159.3
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCC----------cceeeeeecCCCCCceeEEeecCCeEEEecCCC
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS----------NCVLAASIDDSQNDPLLAVARKNGLTDILNPLN 84 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~ 84 (430)
-+|+||+.+|.|.++.-.....+...+...+..|... ..+..+.|-...++..++....|.+|++|.+..
T Consensus 38 e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~e 117 (433)
T KOG1354|consen 38 ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRE 117 (433)
T ss_pred ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeec
Confidence 5799999999999997765422333455556555432 112334443344455677788999999999864
Q ss_pred CcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEE------EEccCCeeEEEEeeecCc---cccCCCcceE
Q 014154 85 GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL------TCTTKGKASMRSIEVTKV---SAESSCSTVK 155 (430)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~v~~~~~~~~---~~~~~~~~i~ 155 (430)
..... .+... ........+.++.+--....+ ..+ .....|...|.++....+ ..+++|-.|.
T Consensus 118 r~~k~--~~~~~-~~~~~~~~~~~lr~p~~~~~~------~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRIN 188 (433)
T KOG1354|consen 118 RGSKK--EGYNL-PEEGPPGTITSLRLPVEGRHD------LEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRIN 188 (433)
T ss_pred ccccc--ccccc-cccCCCCccceeeceeecccc------ceeeeeeeeeccccceeEeeeeeecCccceEeeccceeee
Confidence 33221 11000 000011122222221111100 111 123455666667666655 3445566677
Q ss_pred EeeecCC------------------CceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCee------eEeeCCC-CCCCCC
Q 014154 156 SWNVCAS------------------GTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEK------IWTAKPP-PKNSLG 209 (430)
Q Consensus 156 ~~~~~~~------------------~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~------~~~~~~~-~~~~~~ 209 (430)
+|++.-. .-|++..|+|. -+.++..+..|+|++.|++.... +++.... ......
T Consensus 189 LWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsff 268 (433)
T KOG1354|consen 189 LWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFF 268 (433)
T ss_pred eccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhH
Confidence 7765422 23777889994 57788889999999999984221 2211111 111111
Q ss_pred CcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCC------------Ce---EEEEecCCCCEEE
Q 014154 210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET------------PI---KAVAEEPDSFNIY 274 (430)
Q Consensus 210 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------------~i---~~~~~sp~~~~l~ 274 (430)
..-...|..+.| +++|+++++- .--+|++||++....|+.+++-|.. .| ..++|+-++.+++
T Consensus 269 seiIsSISDvKF--s~sGryilsR-Dyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~ 345 (433)
T KOG1354|consen 269 SEIISSISDVKF--SHSGRYILSR-DYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVM 345 (433)
T ss_pred HHHhhhhhceEE--ccCCcEEEEe-ccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEe
Confidence 111256888999 8999999873 3368999999876778888887742 22 4578999999999
Q ss_pred EEeCCCcEEEEEccCC
Q 014154 275 IGNGSGDLASVDIRTG 290 (430)
Q Consensus 275 ~~~~d~~i~iwd~~~~ 290 (430)
+|+..+..++|++..|
T Consensus 346 TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 346 TGSYNNVFRVFNLARG 361 (433)
T ss_pred cccccceEEEecCCCC
Confidence 9999999999996654
No 229
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.54 E-value=9e-13 Score=110.65 Aligned_cols=267 Identities=12% Similarity=0.103 Sum_probs=170.2
Q ss_pred eeeeeecCCCCCceeEEeecCCeEEEecCCCCc-----ccceeeccCCCCCC-----CCCCceEEEEEeecCcccccccC
Q 014154 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-----LRVAISNAGDSGAQ-----PEDDGIVGLHLFKRQREESSSRS 123 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~ 123 (430)
+.++.| ...|.+||+|..+|.|.++.-.... ....++.|.+ .|. .-...|..+.|......
T Consensus 28 is~vef--~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshep-EFDYLkSleieEKinkIrw~~~~n~------ 98 (433)
T KOG1354|consen 28 ISAVEF--DHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEP-EFDYLKSLEIEEKINKIRWLDDGNL------ 98 (433)
T ss_pred eeeEEe--ecccceEeecCCCCeEEEeecccccccceeeeeeeeccCc-ccchhhhhhhhhhhhhceecCCCCc------
Confidence 445555 5578899999999999999653222 1122222211 111 12345666777776543
Q ss_pred ceEEEEccCCeeEEEEeeecCc-c---------------------ccCC-----CcceEEeeecCCCceEEEEEcCCCCE
Q 014154 124 RTLLTCTTKGKASMRSIEVTKV-S---------------------AESS-----CSTVKSWNVCASGTIAFSKVDISEKF 176 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~-~---------------------~~~~-----~~~i~~~~~~~~~~i~~~~~~~~~~~ 176 (430)
..++..+.+.++.+|.+..... . .+.. -.+.+++.-.|.-.|.++.++.+...
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET 178 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence 3788889999999999864322 0 0000 01234455556677999999999888
Q ss_pred EEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc---eEE
Q 014154 177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---VMS 253 (430)
Q Consensus 177 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~ 253 (430)
++++ .|=.|.+|+++-....+.+....+.... ....-|++..|+| ...+.++..+..|+|++.|++....+ ...
T Consensus 179 ~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmE-eLteVITsaEFhp-~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 179 FLSA-DDLRINLWNLEIIDQSFNIVDIKPANME-ELTEVITSAEFHP-HHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred Eeec-cceeeeeccccccCCceeEEEccccCHH-HHHHHHhhhccCH-hHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence 8865 4568999999754333332221111000 0013578888952 24567888899999999999942210 011
Q ss_pred Ee------------ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEc-cCCeEEeeeeCCC-----------CCC---eEE
Q 014154 254 FD------------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDI-RTGKLLGCFIGKC-----------SGS---IRS 306 (430)
Q Consensus 254 ~~------------~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~-----------~~~---v~~ 306 (430)
+. .--..|..+.|+++|+++++-.. -+|++||+ ...+++.+++.|. ... -..
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe 334 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE 334 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence 11 11246788999999999987542 67999999 4566777776651 112 245
Q ss_pred EEecCCCCeEEEEeCCCcEEEEECCCC
Q 014154 307 IARHPTLPIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 307 i~~~~~~~~l~s~~~dg~i~iwd~~~~ 333 (430)
++|+.++.+++||+..+.+++|++..|
T Consensus 335 c~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 335 CSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred EEEcCCcceEecccccceEEEecCCCC
Confidence 789999999999999999999996544
No 230
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=1.3e-12 Score=124.54 Aligned_cols=190 Identities=16% Similarity=0.119 Sum_probs=143.8
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCC
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 203 (430)
..++..+....+.+|+......+....-....++ ....-+-++++.-++++|+.-+.|.+|+....+.-..+.+|
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l-----~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GH 174 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTL-----YSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGH 174 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCCCceEEE-----EeEEEEeccCcEEEEEeccccccEEEEeccccCCcceeccc
Confidence 4666677777777777543332111110111111 11222345667889999999999999998632222234444
Q ss_pred CCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEE
Q 014154 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA 283 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~ 283 (430)
.+.|.++.+ +.+|.++++.+.|.++++|++.+.+......-+|.+.|..+.|.|+ .+++++.|.+.+
T Consensus 175 ---------eG~iF~i~~--s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcr 241 (967)
T KOG0974|consen 175 ---------EGSIFSIVT--SLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCR 241 (967)
T ss_pred ---------CCceEEEEE--ccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEE
Confidence 377899999 8899999999999999999999977655567789999999999998 999999999999
Q ss_pred EEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154 284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 284 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~ 332 (430)
+|+. .+..+.++.+|....|..++..++...++|++.|+.+++|++..
T Consensus 242 vW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 242 VWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9976 55666689998778899999999999999999999999999864
No 231
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=5.8e-12 Score=118.13 Aligned_cols=169 Identities=14% Similarity=0.115 Sum_probs=109.1
Q ss_pred EEEEcCCCCEEEE-EeCCC--eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-CCc--EE
Q 014154 167 FSKVDISEKFSLF-GGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQ--VR 240 (430)
Q Consensus 167 ~~~~~~~~~~l~~-~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~ 240 (430)
..+|+|+++.|+. .+.+| .|++||+.+++.. .+..+. ......+| +|+++.|+.++. +|. |+
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~---------~~~~~~~~--spDG~~l~f~sd~~g~~~iy 319 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHF---------GIDTEPTW--APDGKSIYFTSDRGGRPQIY 319 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCC---------CCccceEE--CCCCCEEEEEECCCCCceEE
Confidence 4578888887754 44444 5999999877643 232221 22355688 899998887664 444 66
Q ss_pred EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCC---cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 317 (430)
++|+.++. ...+..+......++|+|+|++|+..+.++ .|.+||+.+++.. .+.. ........|+|||++|+
T Consensus 320 ~~dl~~g~--~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~--~~~~~~p~~spdG~~i~ 394 (433)
T PRK04922 320 RVAASGGS--AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP--GSLDESPSFAPNGSMVL 394 (433)
T ss_pred EEECCCCC--eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC--CCCCCCceECCCCCEEE
Confidence 67776644 333333334455789999999998765443 6999999888765 3332 22445678999999887
Q ss_pred EEeCC---CcEEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154 318 SCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 318 s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~ 356 (430)
..+.+ +.|+++++.. ..... +..+ ...+..++|+|
T Consensus 395 ~~s~~~g~~~L~~~~~~g-~~~~~--l~~~-~g~~~~p~wsp 432 (433)
T PRK04922 395 YATREGGRGVLAAVSTDG-RVRQR--LVSA-DGEVREPAWSP 432 (433)
T ss_pred EEEecCCceEEEEEECCC-CceEE--cccC-CCCCCCCccCC
Confidence 77653 4688888854 44444 2222 23356778876
No 232
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=7e-12 Score=117.06 Aligned_cols=195 Identities=11% Similarity=0.039 Sum_probs=130.7
Q ss_pred CCCceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEE-eCC
Q 014154 161 ASGTIAFSKVDISEKFSLFGGK---GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TND 236 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~d 236 (430)
+...+...+|+|+|+.|+..+. +..|++|++.+++..... ... ..+....| +|||+.|+.. +.+
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~---------~~~~~~~~--SPDG~~La~~~~~~ 264 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFP---------RHNGAPAF--SPDGSKLAFALSKT 264 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCC---------CCcCCeEE--CCCCCEEEEEEcCC
Confidence 3457889999999999987543 457999999877543221 111 22345688 8999988765 444
Q ss_pred C--cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC-C--cEEEEEccCCeEEeeeeCCCCCCeEEEEecC
Q 014154 237 H--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-G--DLASVDIRTGKLLGCFIGKCSGSIRSIARHP 311 (430)
Q Consensus 237 g--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~ 311 (430)
| .|++||+.++. ...+..+...+....|+|||+.|+..+.+ + .|+++|+.+++.. .+... ........|+|
T Consensus 265 g~~~I~~~d~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~-~~~~~~~~~Sp 340 (429)
T PRK03629 265 GSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWE-GSQNQDADVSS 340 (429)
T ss_pred CCcEEEEEECCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecC-CCCccCEEECC
Confidence 4 58899998754 34444445577889999999988777654 3 4555577666543 33332 34556789999
Q ss_pred CCCeEEEEeCC---CcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCc---eEecCCCC
Q 014154 312 TLPIIASCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPM---LEIQNGND 376 (430)
Q Consensus 312 ~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~---i~~~~~~~ 376 (430)
+|++|+..+.+ ..|++||+.+++... + ... .......|+|||++ ++++.++. +.+++.+.
T Consensus 341 DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-L--t~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 341 DGKFMVMVSSNGGQQHIAKQDLATGGVQV-L--TDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCeEE-e--CCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 99998876543 358899998886543 2 211 12346889999998 66666654 55555543
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=7.4e-12 Score=117.03 Aligned_cols=171 Identities=12% Similarity=0.067 Sum_probs=105.9
Q ss_pred EEEEEcCCCCEEEE-EeCCCeEEEE--ECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-CCcEEE
Q 014154 166 AFSKVDISEKFSLF-GGKGVEVNVW--DLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRL 241 (430)
Q Consensus 166 ~~~~~~~~~~~l~~-~~~d~~i~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~i 241 (430)
...+|+|+++.|+. .+.++...+| |+..+. ...+..+. .......| +|||+.|+..+. ++...+
T Consensus 243 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~---------~~~~~~~w--SpDG~~l~f~s~~~g~~~I 310 (427)
T PRK02889 243 SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSS---------GIDTEPFF--SPDGRSIYFTSDRGGAPQI 310 (427)
T ss_pred cceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCC---------CCCcCeEE--cCCCCEEEEEecCCCCcEE
Confidence 35688999988764 5667765555 444433 33332221 22455678 899998876654 456666
Q ss_pred EEC--CCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCC---cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeE
Q 014154 242 YDT--SAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII 316 (430)
Q Consensus 242 wd~--~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 316 (430)
|.+ .++. ...+..+.......+|+|+|++|+..+.++ .|.+||+.+++... +.. ........|+|||++|
T Consensus 311 y~~~~~~g~--~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~--~~~~~~p~~spdg~~l 385 (427)
T PRK02889 311 YRMPASGGA--AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD--TTRDESPSFAPNGRYI 385 (427)
T ss_pred EEEECCCCc--eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC--CCCccCceECCCCCEE
Confidence 654 4433 233332333445678999999998777554 69999998887543 332 2234678999999988
Q ss_pred EEEeCCC---cEEEEECCCCceeeEEEeeccccceEEeeecccc
Q 014154 317 ASCGLDS---YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK 357 (430)
Q Consensus 317 ~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 357 (430)
+.++.++ .+++.++ ++.....+ ..+ ...+...+|+|-
T Consensus 386 ~~~~~~~g~~~l~~~~~-~g~~~~~l--~~~-~g~~~~p~wsp~ 425 (427)
T PRK02889 386 LYATQQGGRSVLAAVSS-DGRIKQRL--SVQ-GGDVREPSWGPF 425 (427)
T ss_pred EEEEecCCCEEEEEEEC-CCCceEEe--ecC-CCCCCCCccCCC
Confidence 8877554 3666666 45555543 223 233567788873
No 234
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.52 E-value=5.8e-12 Score=105.29 Aligned_cols=303 Identities=14% Similarity=0.114 Sum_probs=182.7
Q ss_pred CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCce-eEEeecCCeEEEecCCCCccccee
Q 014154 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPL-LAVARKNGLTDILNPLNGDLRVAI 91 (430)
Q Consensus 13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~-l~~g~~dg~i~iwd~~~~~~~~~~ 91 (430)
|..+-++...+-.+.|-|..+- ++.+-|.- -+.+.-+-++ .|.-+ |.....++.|.+|++...+-...+
T Consensus 18 p~g~yiAs~~~yrlviRd~~tl-----q~~qlf~c-ldki~yieW~----ads~~ilC~~yk~~~vqvwsl~Qpew~ckI 87 (447)
T KOG4497|consen 18 PCGNYIASLSRYRLVIRDSETL-----QLHQLFLC-LDKIVYIEWK----ADSCHILCVAYKDPKVQVWSLVQPEWYCKI 87 (447)
T ss_pred CCCCeeeeeeeeEEEEeccchh-----hHHHHHHH-HHHhhheeee----ccceeeeeeeeccceEEEEEeecceeEEEe
Confidence 4555555555567777777764 33333322 1222222222 23333 555788999999999766644444
Q ss_pred eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC-CCceEEEEE
Q 014154 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKV 170 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~-~~~i~~~~~ 170 (430)
.. +..++..+.|.+... ..+.+...+-.+.||++..... +.+.+ ...+..++|
T Consensus 88 de--------g~agls~~~WSPdgr-------hiL~tseF~lriTVWSL~t~~~-----------~~~~~pK~~~kg~~f 141 (447)
T KOG4497|consen 88 DE--------GQAGLSSISWSPDGR-------HILLTSEFDLRITVWSLNTQKG-----------YLLPHPKTNVKGYAF 141 (447)
T ss_pred cc--------CCCcceeeeECCCcc-------eEeeeecceeEEEEEEecccee-----------EEecccccCceeEEE
Confidence 32 345666666655543 3455556667899999875431 11111 233456666
Q ss_pred cCCCCEEEEEeCC------------------------------------CeEEEEECCCCeeeEeeCCCCCCCCCCcCCc
Q 014154 171 DISEKFSLFGGKG------------------------------------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPT 214 (430)
Q Consensus 171 ~~~~~~l~~~~~d------------------------------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 214 (430)
+|+|++.+.++.- +.+.+||---.-.+..+.. .-
T Consensus 142 ~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~----------~l 211 (447)
T KOG4497|consen 142 HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER----------GL 211 (447)
T ss_pred CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeee----------cc
Confidence 6666666554421 1122333211111111111 02
Q ss_pred ceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC----------------------------------------------
Q 014154 215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---------------------------------------------- 248 (430)
Q Consensus 215 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------------------------------------------- 248 (430)
.+..++| +|.+++|++|+.|+.+++.+--+-+
T Consensus 212 G~k~v~w--sP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~ 289 (447)
T KOG4497|consen 212 GLKFVEW--SPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIW 289 (447)
T ss_pred ceeEEEe--ccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCcc
Confidence 3677788 8999999999999999875422110
Q ss_pred -----------cc--eEEEe------ecCCCeEEEEecCCCCEEEEEeCC--CcEEEEEccCCeEEeeeeCCCCCCeEEE
Q 014154 249 -----------RP--VMSFD------FRETPIKAVAEEPDSFNIYIGNGS--GDLASVDIRTGKLLGCFIGKCSGSIRSI 307 (430)
Q Consensus 249 -----------~~--~~~~~------~~~~~i~~~~~sp~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~v~~i 307 (430)
.+ +..++ .....+.-++|++|..++++-... +.+.+||++..++...+.. ..+|...
T Consensus 290 ~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ--k~piraf 367 (447)
T KOG4497|consen 290 EESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ--KHPIRAF 367 (447)
T ss_pred ccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh--ccceeEE
Confidence 00 00111 112345678999999999887543 6799999998887666655 4689999
Q ss_pred EecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCce
Q 014154 308 ARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPML 369 (430)
Q Consensus 308 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i 369 (430)
.|+|....|+.+.....+++|.......+.. ++. +-.|..+.|.-+|.. +..+.|...
T Consensus 368 ~WdP~~prL~vctg~srLY~W~psg~~~V~v---P~~-GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 368 EWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV---PKK-GFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred EeCCCCceEEEEcCCceEEEEcCCCceEEec---CCC-CceeeeEEecCCCcEEEEEcCCceE
Confidence 9999999888888788899999875444443 222 345789999999988 555555443
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=8.8e-12 Score=116.51 Aligned_cols=185 Identities=15% Similarity=0.036 Sum_probs=122.6
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE-EEeC
Q 014154 160 CASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTN 235 (430)
Q Consensus 160 ~~~~~i~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~ 235 (430)
.+...+.+.+|+|+++.|+..+.+ ..|++||+.+++....... . ..+...+| +|+++.|+ +.+.
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~-~---------g~~~~~~~--SPDG~~la~~~~~ 260 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF-K---------GSNSAPAW--SPDGRTLAVALSR 260 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC-C---------CCccceEE--CCCCCEEEEEEcc
Confidence 345678899999999999887643 3599999988765432211 1 23456788 89998876 4567
Q ss_pred CCcEEEEE--CCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC-CCcEEEEE--ccCCeEEeeeeCCCCCCeEEEEec
Q 014154 236 DHQVRLYD--TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVD--IRTGKLLGCFIGKCSGSIRSIARH 310 (430)
Q Consensus 236 dg~i~iwd--~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd--~~~~~~~~~~~~~~~~~v~~i~~~ 310 (430)
++...||. +..+. ...+..+........|+|||+.|+..+. ++...+|. +.+++.. .+... ........|+
T Consensus 261 ~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~-g~~~~~~~~S 336 (427)
T PRK02889 261 DGNSQIYTVNADGSG--LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFT-GSYNTSPRIS 336 (427)
T ss_pred CCCceEEEEECCCCC--cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecC-CCCcCceEEC
Confidence 77766665 44332 4555555555677899999998876654 45556664 4444432 22222 2334567899
Q ss_pred CCCCeEEEEeCCC---cEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCC
Q 014154 311 PTLPIIASCGLDS---YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD 365 (430)
Q Consensus 311 ~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~ 365 (430)
|+|++|+..+.++ .|++||+.+++.... ..+. ....+.|+|||+. ++++.
T Consensus 337 pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l--t~~~---~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 337 PDGKLLAYISRVGGAFKLYVQDLATGQVTAL--TDTT---RDESPSFAPNGRYILYATQ 390 (427)
T ss_pred CCCCEEEEEEccCCcEEEEEEECCCCCeEEc--cCCC---CccCceECCCCCEEEEEEe
Confidence 9999998777654 699999988875432 2221 2367899999998 44443
No 236
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2.5e-11 Score=114.03 Aligned_cols=170 Identities=12% Similarity=0.053 Sum_probs=109.7
Q ss_pred eEEEEEcCCCCEEE-EEeCCC--eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-CC--c
Q 014154 165 IAFSKVDISEKFSL-FGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH--Q 238 (430)
Q Consensus 165 i~~~~~~~~~~~l~-~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~ 238 (430)
+...+|+|+++.|+ +.+.++ .|++||+.++... .+..+. .......| +|+++.|+..+. +| .
T Consensus 248 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~---------~~~~~~~~--spDG~~i~f~s~~~g~~~ 315 (435)
T PRK05137 248 TFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSP---------AIDTSPSY--SPDGSQIVFESDRSGSPQ 315 (435)
T ss_pred ccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccCCC---------CccCceeE--cCCCCEEEEEECCCCCCe
Confidence 34567889998775 444444 4788898876543 233221 23456788 899998887764 33 6
Q ss_pred EEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC---CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCe
Q 014154 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI 315 (430)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 315 (430)
|+++|+..+. ...+..+...+....|+|+|++|+....+ ..|.+||+..+.. ..+.. ...+..+.|+|||++
T Consensus 316 Iy~~d~~g~~--~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~--~~~~~~p~~spDG~~ 390 (435)
T PRK05137 316 LYVMNADGSN--PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS--GFLVEGPTWAPNGRV 390 (435)
T ss_pred EEEEECCCCC--eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC--CCCCCCCeECCCCCE
Confidence 8888887643 34444445566778999999999877643 3688899865543 33332 234678899999998
Q ss_pred EEEEeCC------CcEEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154 316 IASCGLD------SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 316 l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~ 356 (430)
|+..+.+ ..|+++|+..+.. ..+ .. ...+...+|+|
T Consensus 391 i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l--~~--~~~~~~p~Wsp 432 (435)
T PRK05137 391 IMFFRQTPGSGGAPKLYTVDLTGRNE-REV--PT--PGDASDPAWSP 432 (435)
T ss_pred EEEEEccCCCCCcceEEEEECCCCce-EEc--cC--CCCccCcccCC
Confidence 8766543 2588888876554 332 22 12246677876
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=3.5e-11 Score=113.01 Aligned_cols=196 Identities=12% Similarity=0.032 Sum_probs=132.4
Q ss_pred cCCCceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE-EEeC
Q 014154 160 CASGTIAFSKVDISEKFSLFGGK---GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTN 235 (430)
Q Consensus 160 ~~~~~i~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~ 235 (430)
.+...+...+|+|+++.|+..+. +..|++||+.+++... +.... ..+...+| +|+|+.|+ +.+.
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~---------g~~~~~~~--SPDG~~la~~~~~ 266 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFP---------GMTFAPRF--SPDGRKVVMSLSQ 266 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCC---------CcccCcEE--CCCCCEEEEEEec
Confidence 44567899999999999988764 4689999998876532 22221 33556788 89998765 4555
Q ss_pred CCc--EEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC-C--CcEEEEEccCCeEEeeeeCCCCCCeEEEEec
Q 014154 236 DHQ--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-S--GDLASVDIRTGKLLGCFIGKCSGSIRSIARH 310 (430)
Q Consensus 236 dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~ 310 (430)
++. |++||+.++. ...+..+........|+|||+.|+..+. + ..|++||+..++.. .+..+ ...+....|+
T Consensus 267 ~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~-~~~~~~~~~S 342 (435)
T PRK05137 267 GGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFG-GGRYSTPVWS 342 (435)
T ss_pred CCCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecC-CCcccCeEEC
Confidence 554 7777888754 4556656666778999999998887764 3 36888898766553 33333 4456778999
Q ss_pred CCCCeEEEEeCC---CcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCC-C-----CceEecCCCC
Q 014154 311 PTLPIIASCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD-A-----PMLEIQNGND 376 (430)
Q Consensus 311 ~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~-d-----~~i~~~~~~~ 376 (430)
|+|++|+..+.+ ..|.+||+.++.. ..+ ..+. .+..+.|+|||+. ++.+. . ..+.+++...
T Consensus 343 pdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~l-t~~~---~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 343 PRGDLIAFTKQGGGQFSIGVMKPDGSGE-RIL-TSGF---LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred CCCCEEEEEEcCCCceEEEEEECCCCce-Eec-cCCC---CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 999998877643 3688899865543 332 1121 2568899999997 44333 2 2455555543
No 238
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=3.3e-12 Score=108.05 Aligned_cols=192 Identities=13% Similarity=0.089 Sum_probs=135.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCC-CCEEEEEeCCCcEE
Q 014154 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVR 240 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~ 240 (430)
+-.+..++|++.-..++++..|-.|++|+-.. .+...++... ...|++++|. |. +..|++|+. +-|.
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~s--------QrnvtclawR--PlsaselavgCr-~gIc 165 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVS--------QRNVTCLAWR--PLSASELAVGCR-AGIC 165 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchh--------hcceeEEEec--cCCcceeeeeec-ceeE
Confidence 35678899999888889999999999999765 3333333321 1569999995 43 446666665 4588
Q ss_pred EEECCCCCc-------------ceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeEEeeeeCCCCCCeEE
Q 014154 241 LYDTSAQRR-------------PVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRS 306 (430)
Q Consensus 241 iwd~~~~~~-------------~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~ 306 (430)
+|....... .+....+| .+|+++.|.+||..+++++ .|..|.|||..++..+-..... .+.++-
T Consensus 166 iW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g-lgg~sl 243 (445)
T KOG2139|consen 166 IWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG-LGGFSL 243 (445)
T ss_pred EEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC-CCceee
Confidence 997653111 12223344 6899999999999999887 4578999999998876444333 578899
Q ss_pred EEecCCCCeEEEEeCCCcEEEEECC-CCceeeEEEeeccccceEEeeeccccccc--cccCCCCceEe
Q 014154 307 IARHPTLPIIASCGLDSYLRFWDIK-TRQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEI 371 (430)
Q Consensus 307 i~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~ 371 (430)
+.||||+.+|+.+.-|+..++|+.. +.....-. + + .+.|....|+|+|++ ++.+....++-
T Consensus 244 LkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~-l-g--sgrvqtacWspcGsfLLf~~sgsp~lys 307 (445)
T KOG2139|consen 244 LKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI-L-G--SGRVQTACWSPCGSFLLFACSGSPRLYS 307 (445)
T ss_pred EEEcCCCCEEEEecccceeeeehhcccceeccee-c-c--CCceeeeeecCCCCEEEEEEcCCceEEE
Confidence 9999999999999999999999543 33333322 1 1 225788899999998 44444444433
No 239
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=1.7e-11 Score=114.96 Aligned_cols=194 Identities=13% Similarity=0.075 Sum_probs=129.9
Q ss_pred CCCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE-EEeCC
Q 014154 161 ASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTND 236 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d 236 (430)
+...+...+|+|+++.|+..+.+ ..|++||+.+++.... .... ....+.+| +|+|+.|+ +.+.+
T Consensus 202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~---------g~~~~~~~--SpDG~~l~~~~s~~ 269 (433)
T PRK04922 202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFR---------GINGAPSF--SPDGRRLALTLSRD 269 (433)
T ss_pred CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCC---------CCccCceE--CCCCCEEEEEEeCC
Confidence 34578889999999999987743 4699999987765332 1111 22346688 89998775 44555
Q ss_pred C--cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC-CCc--EEEEEccCCeEEeeeeCCCCCCeEEEEecC
Q 014154 237 H--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGD--LASVDIRTGKLLGCFIGKCSGSIRSIARHP 311 (430)
Q Consensus 237 g--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~--i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~ 311 (430)
+ .|++||+.++. ...+..+......++|+|||++|+..+. +|. |+++|+.+++... +..+ ......++|+|
T Consensus 270 g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~-g~~~~~~~~Sp 345 (433)
T PRK04922 270 GNPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQ-GNYNARASVSP 345 (433)
T ss_pred CCceEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecC-CCCccCEEECC
Confidence 5 59999998754 4455555555678899999998887764 444 7777877766432 2222 33445789999
Q ss_pred CCCeEEEEeCCC---cEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCC---CCceEecCCC
Q 014154 312 TLPIIASCGLDS---YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD---APMLEIQNGN 375 (430)
Q Consensus 312 ~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~---d~~i~~~~~~ 375 (430)
+|++|+..+.++ .|.+||+.+++.. .+ ..+. ....+.|+|||++ ++.+. .+.|.+++.+
T Consensus 346 DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~L-t~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 346 DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TL-TPGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CCCEEEEEECCCCceeEEEEECCCCCeE-EC-CCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 999988765443 6999999888765 32 1221 2356799999997 44433 2345555554
No 240
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.47 E-value=1.9e-10 Score=106.39 Aligned_cols=306 Identities=12% Similarity=0.102 Sum_probs=183.6
Q ss_pred CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
..++++++.+|.|..+|..++ +.+-.+........ .. ..++..+++++.+|.|..+|..+|+.+.....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG-----~~~W~~~~~~~~~~--~p----~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 133 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETG-----KRLWRVDLDERLSG--GV----GADGGLVFVGTEKGEVIALDAEDGKELWRAKL 133 (377)
T ss_pred CCEEEEECCCCeEEEEEccCC-----cEeeeecCCCCccc--ce----EEcCCEEEEEcCCCEEEEEECCCCcEeeeecc
Confidence 367889999999999999887 45433222221111 11 12345688888999999999999998766442
Q ss_pred cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEE--Ec
Q 014154 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK--VD 171 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~--~~ 171 (430)
- ..+.+..... . +.++.+..++.+..++..... .+|..........+. -+
T Consensus 134 ~---------~~~~~~p~v~--~-------~~v~v~~~~g~l~a~d~~tG~----------~~W~~~~~~~~~~~~~~~s 185 (377)
T TIGR03300 134 S---------SEVLSPPLVA--N-------GLVVVRTNDGRLTALDAATGE----------RLWTYSRVTPALTLRGSAS 185 (377)
T ss_pred C---------ceeecCCEEE--C-------CEEEEECCCCeEEEEEcCCCc----------eeeEEccCCCceeecCCCC
Confidence 1 1111111111 1 466667777777777754322 245543332221110 01
Q ss_pred C--CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCC-CCCcCCcce-eEEEEeecCCCCEEEEEeCCCcEEEEECCCC
Q 014154 172 I--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS-LGIFTPTWF-TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247 (430)
Q Consensus 172 ~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 247 (430)
| .+..++.+..++.+..+|+++++.+++........ ........+ ....+ .+..+++++.+|.++.||..++
T Consensus 186 p~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~----~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 186 PVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV----DGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred CEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE----ECCEEEEEEcCCEEEEEECCCC
Confidence 1 23467788889999999999998887654221100 000000001 11112 3457778889999999999987
Q ss_pred CcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEE
Q 014154 248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF 327 (430)
Q Consensus 248 ~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~i 327 (430)
+. +..... ....... ..+..+++++.+|.|..+|..+++.+................ .+..|++++.+|.|++
T Consensus 262 ~~-~W~~~~--~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~ 334 (377)
T TIGR03300 262 RV-LWKRDA--SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHW 334 (377)
T ss_pred cE-EEeecc--CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEE
Confidence 63 333331 1122222 245688888899999999999999877663220112222222 4568899999999999
Q ss_pred EECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEec
Q 014154 328 WDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQ 372 (430)
Q Consensus 328 wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~ 372 (430)
+|..+|+.+..+.+.+ .......++. +++++.++.||.|..|
T Consensus 335 ~d~~tG~~~~~~~~~~--~~~~~sp~~~-~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 335 LSREDGSFVARLKTDG--SGIASPPVVV-GDGLLVQTRDGDLYAF 376 (377)
T ss_pred EECCCCCEEEEEEcCC--CccccCCEEE-CCEEEEEeCCceEEEe
Confidence 9999999998854322 1222333333 4567888889998876
No 241
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=3.9e-10 Score=101.05 Aligned_cols=302 Identities=14% Similarity=0.128 Sum_probs=177.5
Q ss_pred CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEe-----ecC-----CeEEEecCC
Q 014154 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVA-----RKN-----GLTDILNPL 83 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g-----~~d-----g~i~iwd~~ 83 (430)
..++++-..++.++|++...+ ..+.+.... . ...+-+ +|-|.||.+- ..+ -.+.+|++.
T Consensus 45 ~G~lfA~~~~~~v~i~~~~~~-----~~~lt~~~~--~--~~~L~f--SP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ve 113 (566)
T KOG2315|consen 45 NGRLFAYSDNQVVKVFEIATL-----KVVLCVELK--K--TYDLLF--SPKGNYLLTWEPWAIYGPKNASNPNVLVYNVE 113 (566)
T ss_pred CCcEEEEEcCCeEEEEEccCC-----cEEEEeccc--e--eeeeee--cccccccccccccccccCCCCCCCceeeeeec
Confidence 367777777888888888875 233222211 2 344445 7778787762 122 347799998
Q ss_pred CCcccceeec----cCCCCCCCCCCceE-----EEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc---------
Q 014154 84 NGDLRVAISN----AGDSGAQPEDDGIV-----GLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV--------- 145 (430)
Q Consensus 84 ~~~~~~~~~~----~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~--------- 145 (430)
++.....+.. -|...|+..+.-.. .+.++...... ....-.....+..+.+.-.+.
T Consensus 114 t~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~------~~~~kl~~~~i~~f~lSpgp~~~~vAvyvP 187 (566)
T KOG2315|consen 114 TGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFK------TIQHKLSVSGITMLSLSPGPEPPFVAVYVP 187 (566)
T ss_pred cceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCcc------ceeeeeeccceeeEEecCCCCCceEEEEcc
Confidence 8655544443 23334443222111 23344433211 111111111122222222211
Q ss_pred cccCCCcceEEeeecCC-------------CceEEEEEcCCCCEEE-EEeC-----------CCeEEEEECCCCeeeEee
Q 014154 146 SAESSCSTVKSWNVCAS-------------GTIAFSKVDISEKFSL-FGGK-----------GVEVNVWDLDKCEKIWTA 200 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~-------------~~i~~~~~~~~~~~l~-~~~~-----------d~~i~~~d~~~~~~~~~~ 200 (430)
...+.-..+++|..... ..-..+.|++-+.-|+ .++. +.++++++++.......+
T Consensus 188 e~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L 267 (566)
T KOG2315|consen 188 EKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL 267 (566)
T ss_pred CCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec
Confidence 23334456677765411 1123356666554332 2221 335777777633333333
Q ss_pred CCCCCCCCCCcCCcceeEEEEeecCCCCEEEE--EeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC
Q 014154 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA--GTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG 278 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 278 (430)
.. .++|.++.| ++++..+++ |-.-..+.|||++. . ++. ...+++-.++-|+|.|++|+.++-
T Consensus 268 ~k----------~GPVhdv~W--~~s~~EF~VvyGfMPAkvtifnlr~-~-~v~--df~egpRN~~~fnp~g~ii~lAGF 331 (566)
T KOG2315|consen 268 LK----------EGPVHDVTW--SPSGREFAVVYGFMPAKVTIFNLRG-K-PVF--DFPEGPRNTAFFNPHGNIILLAGF 331 (566)
T ss_pred CC----------CCCceEEEE--CCCCCEEEEEEecccceEEEEcCCC-C-EeE--eCCCCCccceEECCCCCEEEEeec
Confidence 32 278999999 788865544 55677899999985 2 344 445678899999999999998875
Q ss_pred C---CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeC------CCcEEEEECCCCceeeEEEeeccccceE
Q 014154 279 S---GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL------DSYLRFWDIKTRQLLSAVFLKQHLNEVV 349 (430)
Q Consensus 279 d---~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~v 349 (430)
+ |.|.+||+.+.+++..+... .-+-+.|+|||++++|+.. |+.++||++. |.+++...+ ...+
T Consensus 332 GNL~G~mEvwDv~n~K~i~~~~a~---~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f----~sEL 403 (566)
T KOG2315|consen 332 GNLPGDMEVWDVPNRKLIAKFKAA---NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMF----KSEL 403 (566)
T ss_pred CCCCCceEEEeccchhhccccccC---CceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceeehhhh----hHhH
Confidence 5 78999999999998888764 3466799999999999863 6789999984 666654222 2124
Q ss_pred Eeeeccc
Q 014154 350 FDSAFAD 356 (430)
Q Consensus 350 ~~~~~s~ 356 (430)
+.+.|-|
T Consensus 404 ~qv~W~P 410 (566)
T KOG2315|consen 404 LQVEWRP 410 (566)
T ss_pred hheeeee
Confidence 5666654
No 242
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=2.7e-11 Score=108.56 Aligned_cols=274 Identities=15% Similarity=0.108 Sum_probs=174.0
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCC--cceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS--NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
-.++||..--.|++||+... ...|.-|... |.+.-++-|.+ .++.=..|.+|.+..- -|.. ..+.
T Consensus 65 Y~lAtG~YKP~ikvydlanL-------SLKFERhlDae~V~feiLsDD~S----K~v~L~~DR~IefHak-~G~h-y~~R 131 (703)
T KOG2321|consen 65 YLLATGTYKPQIKVYDLANL-------SLKFERHLDAEVVDFEILSDDYS----KSVFLQNDRTIEFHAK-YGRH-YRTR 131 (703)
T ss_pred EEEEecccCCceEEEEcccc-------eeeeeecccccceeEEEeccchh----hheEeecCceeeehhh-cCee-eeee
Confidence 45778888889999999873 3334445433 33333333333 2444445666665542 1210 0000
Q ss_pred ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC
Q 014154 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 172 (430)
. |..+. .+.+.... .-++.++.+..+.-.++..+. .+.-+. ...+.++++.+++
T Consensus 132 I-------P~~GR--Dm~y~~~s--------cDly~~gsg~evYRlNLEqGr--------fL~P~~-~~~~~lN~v~in~ 185 (703)
T KOG2321|consen 132 I-------PKFGR--DMKYHKPS--------CDLYLVGSGSEVYRLNLEQGR--------FLNPFE-TDSGELNVVSINE 185 (703)
T ss_pred c-------CcCCc--cccccCCC--------ccEEEeecCcceEEEEccccc--------cccccc-cccccceeeeecC
Confidence 0 00011 12222111 234444444444444444322 233333 2347899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCC--CCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc
Q 014154 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK--NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (430)
Q Consensus 173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 250 (430)
...+|++|+.+|.|-.||.++...+..+..... ...+......|+++.| +.+|-.+++|+..|.|.|||++..+..
T Consensus 186 ~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F--~d~gL~~aVGts~G~v~iyDLRa~~pl 263 (703)
T KOG2321|consen 186 EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKF--RDDGLHVAVGTSTGSVLIYDLRASKPL 263 (703)
T ss_pred ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEe--cCCceeEEeeccCCcEEEEEcccCCce
Confidence 999999999999999999987666555443221 1111122345999999 677999999999999999999985543
Q ss_pred eEEEeecCCCeEEEEecCC--CCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEE
Q 014154 251 VMSFDFRETPIKAVAEEPD--SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFW 328 (430)
Q Consensus 251 ~~~~~~~~~~i~~~~~sp~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iw 328 (430)
+..-.+...+|..+.|.+. ++.+++. ....++|||-.+|+....+.. ...++.+++-|++-+++++-.++.+..|
T Consensus 264 ~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp--t~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 264 LVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP--TSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred eecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc--cCCcCceeeecCCceEEEecCCCcceeE
Confidence 3333334568999999765 3445443 567899999999999888876 5679999999999999999888877777
Q ss_pred ECCC
Q 014154 329 DIKT 332 (430)
Q Consensus 329 d~~~ 332 (430)
-+..
T Consensus 341 yiP~ 344 (703)
T KOG2321|consen 341 YIPS 344 (703)
T ss_pred Eccc
Confidence 6654
No 243
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.45 E-value=9.7e-12 Score=111.88 Aligned_cols=192 Identities=14% Similarity=0.125 Sum_probs=149.2
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee------------------cCCCCEEEEE
Q 014154 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS------------------IDDHRKFVAG 233 (430)
Q Consensus 172 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------------~~~~~~l~s~ 233 (430)
|...++|....||.+++|+...++...++.....-. +..++..|.. +.+...++-|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s------~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlg 76 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLS------GTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLG 76 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhcc------CcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEee
Confidence 456788999999999999998887766665432111 1222222210 2244578889
Q ss_pred eCCCcEEEEECCCCCcceEEEe--ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecC
Q 014154 234 TNDHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP 311 (430)
Q Consensus 234 ~~dg~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~ 311 (430)
...|.|.+|+...++. ...+. .|.+.|.++.++.+-..|.+++.|+.+..|+....+.++.+... ...+.+++.+|
T Consensus 77 t~~g~v~~ys~~~g~i-t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~-~~~~~sl~is~ 154 (541)
T KOG4547|consen 77 TPQGSVLLYSVAGGEI-TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ-KPLVSSLCISP 154 (541)
T ss_pred cCCccEEEEEecCCeE-EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-CCccceEEEcC
Confidence 9999999999998763 44443 58899999999999999999999999999999999999999987 78899999999
Q ss_pred CCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccc-----ccc--cccCCCCceEecCCCC
Q 014154 312 TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK-----EVA--NAAADAPMLEIQNGND 376 (430)
Q Consensus 312 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~~--~~~~~d~~i~~~~~~~ 376 (430)
|+..|++++ +.|++||+++++.+.. +.|| ...|..++|-.+ |.+ .+...+..+.+|-...
T Consensus 155 D~~~l~~as--~~ik~~~~~~kevv~~--ftgh-~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTAS--RQIKVLDIETKEVVIT--FTGH-GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEecc--ceEEEEEccCceEEEE--ecCC-CcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999987 5799999999999988 6788 666799999887 666 3344556666675544
No 244
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.43 E-value=7.2e-09 Score=94.17 Aligned_cols=282 Identities=16% Similarity=0.130 Sum_probs=165.3
Q ss_pred CceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeec----CCeEEEecCCCC-cccceeeccCCCC
Q 014154 24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK----NGLTDILNPLNG-DLRVAISNAGDSG 98 (430)
Q Consensus 24 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~----dg~i~iwd~~~~-~~~~~~~~~~~~~ 98 (430)
+.|.+|++... .+....+........ ...+.+ +|++++|.+... +|.|..|.+... ..+..+.....
T Consensus 13 ~gI~~~~~d~~-~g~l~~~~~~~~~~~---Ps~l~~--~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-- 84 (345)
T PF10282_consen 13 GGIYVFRFDEE-TGTLTLVQTVAEGEN---PSWLAV--SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-- 84 (345)
T ss_dssp TEEEEEEEETT-TTEEEEEEEEEESSS---ECCEEE---TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE--
T ss_pred CcEEEEEEcCC-CCCceEeeeecCCCC---CceEEE--EeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc--
Confidence 78999999443 222333333322222 222334 677888888765 578999988754 22222221100
Q ss_pred CCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeee---------cCCCceEEEE
Q 014154 99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV---------CASGTIAFSK 169 (430)
Q Consensus 99 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~---------~~~~~i~~~~ 169 (430)
.......+.+.+... ..+++...+|.+.++.+..... ......++.. .......++.
T Consensus 85 ---~g~~p~~i~~~~~g~-------~l~vany~~g~v~v~~l~~~g~----l~~~~~~~~~~g~g~~~~rq~~~h~H~v~ 150 (345)
T PF10282_consen 85 ---GGSSPCHIAVDPDGR-------FLYVANYGGGSVSVFPLDDDGS----LGEVVQTVRHEGSGPNPDRQEGPHPHQVV 150 (345)
T ss_dssp ---SSSCEEEEEECTTSS-------EEEEEETTTTEEEEEEECTTSE----EEEEEEEEESEEEESSTTTTSSTCEEEEE
T ss_pred ---CCCCcEEEEEecCCC-------EEEEEEccCCeEEEEEccCCcc----cceeeeecccCCCCCcccccccccceeEE
Confidence 112333455444333 3445556788999998864311 0011112211 1235688999
Q ss_pred EcCCCCEEEEEeC-CCeEEEEECCCCe--ee--EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-CCCcEEEEE
Q 014154 170 VDISEKFSLFGGK-GVEVNVWDLDKCE--KI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYD 243 (430)
Q Consensus 170 ~~~~~~~l~~~~~-d~~i~~~d~~~~~--~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd 243 (430)
++|+++++++... ...|++|++.... .. ..+.... ....+.++| +|+++++++.. .++.|.+++
T Consensus 151 ~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~--------G~GPRh~~f--~pdg~~~Yv~~e~s~~v~v~~ 220 (345)
T PF10282_consen 151 FSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP--------GSGPRHLAF--SPDGKYAYVVNELSNTVSVFD 220 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST--------TSSEEEEEE---TTSSEEEEEETTTTEEEEEE
T ss_pred ECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc--------CCCCcEEEE--cCCcCEEEEecCCCCcEEEEe
Confidence 9999999887643 3479999997654 21 1221111 145788999 88998776654 577899999
Q ss_pred CC--CCCc-ceEEEeec------CCCeEEEEecCCCCEEEEEe-CCCcEEEEEcc--CCe--EEeeeeCCCCCCeEEEEe
Q 014154 244 TS--AQRR-PVMSFDFR------ETPIKAVAEEPDSFNIYIGN-GSGDLASVDIR--TGK--LLGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 244 ~~--~~~~-~~~~~~~~------~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~--~~~--~~~~~~~~~~~~v~~i~~ 309 (430)
+. .+.. .+..+... ......|+++|||++|+++. ..+.|.+|++. +++ .+..+... ....+.+.+
T Consensus 221 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~ 299 (345)
T PF10282_consen 221 YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAF 299 (345)
T ss_dssp EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE
T ss_pred ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEE
Confidence 88 3211 12222211 12577899999999998877 45789999983 343 34444433 445899999
Q ss_pred cCCCCeEEEEe-CCCcEEEEEC--CCCceeeE
Q 014154 310 HPTLPIIASCG-LDSYLRFWDI--KTRQLLSA 338 (430)
Q Consensus 310 ~~~~~~l~s~~-~dg~i~iwd~--~~~~~~~~ 338 (430)
+|+|++|+++. .++.|.+|++ .+|.+...
T Consensus 300 s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 300 SPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 99999998887 5578999876 56666554
No 245
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.43 E-value=1e-11 Score=111.69 Aligned_cols=212 Identities=10% Similarity=0.114 Sum_probs=153.5
Q ss_pred CCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeee
Q 014154 63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (430)
Q Consensus 63 p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~ 142 (430)
|-+.|+|....||.++||+..+++....|.. +. ..+..+....|.+..
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p------------~~--------------------~~s~t~~~~~w~L~~ 50 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAP------------IA--------------------SLSGTCTYTKWGLSA 50 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeecc------------ch--------------------hccCcceeEEEEEEe
Confidence 4467899999999999999998887666542 11 111222333444322
Q ss_pred cCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEe
Q 014154 143 TKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (430)
Q Consensus 143 ~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (430)
... +.+.... ... -..+.+...++-|...|.|.+|++..++..+.+.... |...|.++.+
T Consensus 51 ~~s-------~~k~~~~---~~~--~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~-------h~~~v~~~~~- 110 (541)
T KOG4547|consen 51 DYS-------PMKWLSL---EKA--KKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDK-------HYGNVNEILD- 110 (541)
T ss_pred ccc-------hHHHHhH---HHH--hhccCCceEEEeecCCccEEEEEecCCeEEEEEecCC-------CCCcceeeec-
Confidence 110 1111000 000 1112355677889999999999999999888776432 3477888888
Q ss_pred ecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCC
Q 014154 223 SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG 302 (430)
Q Consensus 223 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 302 (430)
+.+-..|.+++.|+.+..|+..... .++.+......+.+++++||+..+++++ +.|.+||+.+++.+..|.+| .+
T Consensus 111 -~~~~~ciyS~~ad~~v~~~~~~~~~-~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh-~s 185 (541)
T KOG4547|consen 111 -AQRLGCIYSVGADLKVVYILEKEKV-IIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGH-GS 185 (541)
T ss_pred -ccccCceEecCCceeEEEEecccce-eeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCC-Cc
Confidence 6777899999999999999999854 5778888888899999999999998875 68999999999999999999 99
Q ss_pred CeEEEEecCC-----CCeEEE-EeCCCcEEEEECC
Q 014154 303 SIRSIARHPT-----LPIIAS-CGLDSYLRFWDIK 331 (430)
Q Consensus 303 ~v~~i~~~~~-----~~~l~s-~~~dg~i~iwd~~ 331 (430)
+|+++.|--+ |.++++ ...+..+.+|-+.
T Consensus 186 ~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 186 PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred ceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 9999999876 555544 4455567777654
No 246
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.43 E-value=3.7e-11 Score=99.03 Aligned_cols=232 Identities=13% Similarity=0.114 Sum_probs=146.8
Q ss_pred eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--EeeCC
Q 014154 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI--WTAKP 202 (430)
Q Consensus 125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~ 202 (430)
.++-+...|.+.++...+... ...-..+..-.+. .....++.|++.+..++++-.+|.+.+-+....... ...+.
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~s--s~~L~~ls~~ki~-~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~ 163 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDES--SVHLRGLSSKKIS-VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV 163 (339)
T ss_pred eeeeccccceEEEEeecccee--eeeecccchhhhh-heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc
Confidence 445566677777777654432 0000000000000 013457788999999999999999986665443332 24555
Q ss_pred CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceE-EEeecCCCeEEEEecC-CCCEEEEEeCCC
Q 014154 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM-SFDFRETPIKAVAEEP-DSFNIYIGNGSG 280 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~sp-~~~~l~~~~~d~ 280 (430)
|. ..+..+.|. ..+.+++.+|+.|+.+..||++.+...+. ..+-|...|.+|.-+| .+.+|++|+.|-
T Consensus 164 He---------~E~Wta~f~-~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe 233 (339)
T KOG0280|consen 164 HE---------FEAWTAKFS-DKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDE 233 (339)
T ss_pred cc---------eeeeeeecc-cCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecccc
Confidence 54 445666774 44568999999999999999995443233 3556888999998875 568999999999
Q ss_pred cEEEEEcc-CCeEEeeeeCCCCCCeEEEEecCCC--CeEEEEeCCCcEEEEECCCCceee--EEE-eeccccceEEeeec
Q 014154 281 DLASVDIR-TGKLLGCFIGKCSGSIRSIARHPTL--PIIASCGLDSYLRFWDIKTRQLLS--AVF-LKQHLNEVVFDSAF 354 (430)
Q Consensus 281 ~i~iwd~~-~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~--~~~-~~~~~~~~v~~~~~ 354 (430)
.|++||.| .++++..-.. .+.|+.+.++|.- ..|+++..+| .+|-+.+...... .++ ...| ...+..-.|
T Consensus 234 ~i~~~DtRnm~kPl~~~~v--~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~h-dSl~YG~DW 309 (339)
T KOG0280|consen 234 CIRVLDTRNMGKPLFKAKV--GGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIH-DSLCYGGDW 309 (339)
T ss_pred ceeeeehhcccCccccCcc--ccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccc-cceeecccc
Confidence 99999999 5677655443 6789999999954 4566666665 7777776543331 111 2344 455566666
Q ss_pred cccccc-cc-cCCCCceE-ecC
Q 014154 355 ADKEVA-NA-AADAPMLE-IQN 373 (430)
Q Consensus 355 s~~g~~-~~-~~~d~~i~-~~~ 373 (430)
...... ++ ...|+.++ +|-
T Consensus 310 d~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 310 DSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred ccccceeeeeeccccceeeeee
Confidence 433233 33 24566644 553
No 247
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.42 E-value=1e-10 Score=98.59 Aligned_cols=231 Identities=11% Similarity=0.147 Sum_probs=145.3
Q ss_pred ceeeecCCCceEEEEccC-CCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 16 RALTFDSLGLIKVIEARG-EHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
-+++.++|.++|||--.. + +.-..+ .|..+..+.++++ .++...|++|-.+|++.-+.+...-....+..
T Consensus 38 gv~~~s~drtvrv~lkrds~-----q~wpsI-~~~mP~~~~~~~y--~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r- 108 (404)
T KOG1409|consen 38 GVISVSEDRTVRVWLKRDSG-----QYWPSI-YHYMPSPCSAMEY--VSESRRLYVGQDNGTVTEFALSEDFNKMTFLK- 108 (404)
T ss_pred CeEEccccceeeeEEecccc-----ccCchh-hhhCCCCceEeee--eccceEEEEEEecceEEEEEhhhhhhhcchhh-
Confidence 478999999999995444 3 111111 1444555666766 66677899999999998887642211111100
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
....+...+..+. +.... ..+++++.|....-....++. .+--|.+.. ...++.+. -
T Consensus 109 ---~~~~h~~~v~~~i-f~~~~-------e~V~s~~~dk~~~~hc~e~~~--------~lg~Y~~~~--~~t~~~~d--~ 165 (404)
T KOG1409|consen 109 ---DYLAHQARVSAIV-FSLTH-------EWVLSTGKDKQFAWHCTESGN--------RLGGYNFET--PASALQFD--A 165 (404)
T ss_pred ---hhhhhhcceeeEE-ecCCc-------eeEEEeccccceEEEeeccCC--------cccceEeec--cCCCCcee--e
Confidence 0112333444333 33322 367777766554433333222 111111110 01111111 1
Q ss_pred CEEEEEeCCCeEEEEEC--CCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014154 175 KFSLFGGKGVEVNVWDL--DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 175 ~~l~~~~~d~~i~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 252 (430)
.+.+.|...|.|.+-.+ .....+.++.++. ..+.+++| .+...+|.+|..|..+.+||+...+-...
T Consensus 166 ~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~---------~~~~~l~W--d~~~~~LfSg~~d~~vi~wdigg~~g~~~ 234 (404)
T KOG1409|consen 166 LYAFVGDHSGQITMLKLEQNGCQLITTFNGHT---------GEVTCLKW--DPGQRLLFSGASDHSVIMWDIGGRKGTAY 234 (404)
T ss_pred EEEEecccccceEEEEEeecCCceEEEEcCcc---------cceEEEEE--cCCCcEEEeccccCceEEEeccCCcceee
Confidence 15556666666665544 3455666777765 77999999 78889999999999999999987665677
Q ss_pred EEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC
Q 014154 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (430)
Q Consensus 253 ~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 289 (430)
.+.+|...|..+...+--+.+++++.||.|.+||+..
T Consensus 235 el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 235 ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred eeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 8889999999999888888999999999999999853
No 248
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.39 E-value=2.5e-12 Score=128.70 Aligned_cols=184 Identities=14% Similarity=0.171 Sum_probs=147.5
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCC
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 203 (430)
...++++.||.+++|.-... .+|..|+......++.+.|+.+|+.+..+..||.+.+|... .+.....+.|
T Consensus 2221 ~~Yltgs~dgsv~~~~w~~~--------~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qch 2291 (2439)
T KOG1064|consen 2221 PYYLTGSQDGSVRMFEWGHG--------QQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCH 2291 (2439)
T ss_pred ceEEecCCCceEEEEeccCC--------CeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccC
Confidence 57889999999999975432 37888888777889999999999999999999999999987 5556666665
Q ss_pred CCCCCCCcCCcceeEEEEeecCCCCEEEEEe---CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCC
Q 014154 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~ 280 (430)
. .......|. +..+++++ .++.+.+||..-....-..-..|.+.++++++.|..++|++|+.+|
T Consensus 2292 n---------k~~~Df~Fi----~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2292 N---------KALSDFRFI----GSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred C---------ccccceeee----ehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcC
Confidence 4 445667774 35666654 4678999997643322233378999999999999999999999999
Q ss_pred cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEE
Q 014154 281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVF 340 (430)
Q Consensus 281 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 340 (430)
.|++||++..++++.++. ++ ...++++|+..|.++||++..-..++.+.
T Consensus 2359 ~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred cEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 999999999888766654 44 56789999999999999999888887753
No 249
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.39 E-value=7.3e-09 Score=91.95 Aligned_cols=281 Identities=16% Similarity=0.075 Sum_probs=160.5
Q ss_pred CCCCCcceeeecCC-----CceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeec----------C
Q 014154 10 PGCPPLRALTFDSL-----GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK----------N 74 (430)
Q Consensus 10 ~~~~~~~l~t~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~----------d 74 (430)
|..++.+++.-+.. |.|.+.|..+. +++..+..-..+.. + . +|||+.|+++.. +
T Consensus 8 ~~~~~~~v~V~d~~~~~~~~~v~ViD~~~~-----~v~g~i~~G~~P~~-~---~--spDg~~lyva~~~~~R~~~G~~~ 76 (352)
T TIGR02658 8 PASDARRVYVLDPGHFAATTQVYTIDGEAG-----RVLGMTDGGFLPNP-V---V--ASDGSFFAHASTVYSRIARGKRT 76 (352)
T ss_pred CCCCCCEEEEECCcccccCceEEEEECCCC-----EEEEEEEccCCCce-e---E--CCCCCEEEEEeccccccccCCCC
Confidence 44455566666554 89999999997 77766664433322 1 3 678888877654 7
Q ss_pred CeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcce
Q 014154 75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV 154 (430)
Q Consensus 75 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i 154 (430)
..|.+||..+.+.+..+..-....+.. ......+.+.+... . +.|.+.. .+..+
T Consensus 77 d~V~v~D~~t~~~~~~i~~p~~p~~~~-~~~~~~~~ls~dgk--------~---------l~V~n~~--------p~~~V 130 (352)
T TIGR02658 77 DYVEVIDPQTHLPIADIELPEGPRFLV-GTYPWMTSLTPDNK--------T---------LLFYQFS--------PSPAV 130 (352)
T ss_pred CEEEEEECccCcEEeEEccCCCchhhc-cCccceEEECCCCC--------E---------EEEecCC--------CCCEE
Confidence 899999999999888776310000000 00111122222211 2 2222211 12234
Q ss_pred EEeeecCCCceEEEEEcCCCCEEEEE--------eCCCeEEEEECCCCeeeEee--CC--CCCCCCCCcCCcceeEEEEe
Q 014154 155 KSWNVCASGTIAFSKVDISEKFSLFG--------GKGVEVNVWDLDKCEKIWTA--KP--PPKNSLGIFTPTWFTSAAFL 222 (430)
Q Consensus 155 ~~~~~~~~~~i~~~~~~~~~~~l~~~--------~~d~~i~~~d~~~~~~~~~~--~~--~~~~~~~~~~~~~v~~~~~~ 222 (430)
.+.++..+..+..+.. |++..++.. +.||......+.+....... .. ....... . .+ .|.
T Consensus 131 ~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~-~--rP----~~~ 202 (352)
T TIGR02658 131 GVVDLEGKAFVRMMDV-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLI-N--HP----AYS 202 (352)
T ss_pred EEEECCCCcEEEEEeC-CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccc-c--CC----ceE
Confidence 4444444333333332 344443333 34444444333321111110 00 0000000 0 11 231
Q ss_pred ecCCCCEEEEEeCCCcEEEEECCCCC----cceEEEee-------cCCCeEEEEecCCCCEEEEEe----------CCCc
Q 014154 223 SIDDHRKFVAGTNDHQVRLYDTSAQR----RPVMSFDF-------RETPIKAVAEEPDSFNIYIGN----------GSGD 281 (430)
Q Consensus 223 ~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~-------~~~~i~~~~~sp~~~~l~~~~----------~d~~ 281 (430)
..++.++.+... |.|.+.|+.... .+...+.. ..+.+.-++++|+++.+++.. ..+.
T Consensus 203 -~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~ 280 (352)
T TIGR02658 203 -NKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF 280 (352)
T ss_pred -cCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE
Confidence 337777777555 999999965422 12222211 123344599999999998853 2257
Q ss_pred EEEEEccCCeEEeeeeCCCCCCeEEEEecCCCC-eEEEEe-CCCcEEEEECCCCceeeEE
Q 014154 282 LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCG-LDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 282 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~ 339 (430)
|.++|..+++.+..+.. ...+..++++||++ +|++.. .++.|.++|..+++.+..+
T Consensus 281 V~ViD~~t~kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 281 LFVVDAKTGKRLRKIEL--GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEECCCCeEEEEEeC--CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 99999999999999886 45889999999999 777665 6788999999999999986
No 250
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.1e-09 Score=98.25 Aligned_cols=197 Identities=15% Similarity=0.182 Sum_probs=125.3
Q ss_pred CCceEEEEEcCCC--CEEEE-----EeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEE
Q 014154 162 SGTIAFSKVDISE--KFSLF-----GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAG 233 (430)
Q Consensus 162 ~~~i~~~~~~~~~--~~l~~-----~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~ 233 (430)
...|..+.++|.+ ..+++ .+.-..|++|.+.....-..+ ... .....+. -.+.| ++.|. +|+.+
T Consensus 165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~-a~k----sFFkadk-vqm~W--N~~gt~LLvLa 236 (566)
T KOG2315|consen 165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPV-ANK----SFFKADK-VQMKW--NKLGTALLVLA 236 (566)
T ss_pred ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchh-hhc----cccccce-eEEEe--ccCCceEEEEE
Confidence 3567788888852 34443 344557888887522111100 000 0101111 23345 44444 23222
Q ss_pred --eCC---------CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEE--EeCCCcEEEEEccCCeEEeeeeCCC
Q 014154 234 --TND---------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI--GNGSGDLASVDIRTGKLLGCFIGKC 300 (430)
Q Consensus 234 --~~d---------g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~ 300 (430)
.-| .++++++++. ......+. ..++|.++.|+|+++-+++ |-.-..+.|||+ .+.++..+.
T Consensus 237 stdVDktn~SYYGEq~Lyll~t~g-~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df~--- 310 (566)
T KOG2315|consen 237 STDVDKTNASYYGEQTLYLLATQG-ESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDFP--- 310 (566)
T ss_pred EEeecCCCccccccceEEEEEecC-ceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcC-CCCEeEeCC---
Confidence 222 3688888873 33233333 3689999999999976655 445678999998 566666665
Q ss_pred CCCeEEEEecCCCCeEEEEeCC---CcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCC------CCceE
Q 014154 301 SGSIRSIARHPTLPIIASCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD------APMLE 370 (430)
Q Consensus 301 ~~~v~~i~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~------d~~i~ 370 (430)
+++=+++-|+|.|++|+.+|.+ |.|-|||+.+.+++..+. .. . .+-..|+|||.+ ++++. |+.++
T Consensus 311 egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~--a~-~--tt~~eW~PdGe~flTATTaPRlrvdNg~K 385 (566)
T KOG2315|consen 311 EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK--AA-N--TTVFEWSPDGEYFLTATTAPRLRVDNGIK 385 (566)
T ss_pred CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc--cC-C--ceEEEEcCCCcEEEEEeccccEEecCCeE
Confidence 4567889999999999999865 789999999998888742 22 2 255799999998 54443 68889
Q ss_pred ecCCCCC
Q 014154 371 IQNGNDT 377 (430)
Q Consensus 371 ~~~~~~~ 377 (430)
||++...
T Consensus 386 iwhytG~ 392 (566)
T KOG2315|consen 386 IWHYTGS 392 (566)
T ss_pred EEEecCc
Confidence 9987643
No 251
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.37 E-value=1.4e-10 Score=108.89 Aligned_cols=185 Identities=15% Similarity=0.089 Sum_probs=126.3
Q ss_pred CCCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEE-EeCC
Q 014154 161 ASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTND 236 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~d 236 (430)
+...+...+|+|++++|+..... ..|++||+.+++...... .. ..+.+++| +|+++.|+. .+.+
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~---------~~~~~~~~--spDg~~l~~~~~~~ 255 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FP---------GMNGAPAF--SPDGSKLAVSLSKD 255 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CC---------CCccceEE--CCCCCEEEEEECCC
Confidence 34567888999999999987654 479999998875543221 11 23456788 899987764 4444
Q ss_pred C--cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC-C--cEEEEEccCCeEEeeeeCCCCCCeEEEEecC
Q 014154 237 H--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-G--DLASVDIRTGKLLGCFIGKCSGSIRSIARHP 311 (430)
Q Consensus 237 g--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~ 311 (430)
+ .|++||+.++. ...+..+........|+|+++.|+..+.. + .|+++|+.+++.. .+..+ ...+..+.|+|
T Consensus 256 ~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~-~~~~~~~~~sp 331 (417)
T TIGR02800 256 GNPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFR-GGYNASPSWSP 331 (417)
T ss_pred CCccEEEEECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC-CCCccCeEECC
Confidence 4 58889988754 34444454555678899999988766543 3 5888898877643 34333 45677889999
Q ss_pred CCCeEEEEeCCC---cEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCC
Q 014154 312 TLPIIASCGLDS---YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADA 366 (430)
Q Consensus 312 ~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d 366 (430)
++++|+.++.++ .|.+||+.++..... ... . .....+|+|||+. ++...+
T Consensus 332 dg~~i~~~~~~~~~~~i~~~d~~~~~~~~l---~~~-~-~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 332 DGDLIAFVHREGGGFNIAVMDLDGGGERVL---TDT-G-LDESPSFAPNGRMILYATTR 385 (417)
T ss_pred CCCEEEEEEccCCceEEEEEeCCCCCeEEc---cCC-C-CCCCceECCCCCEEEEEEeC
Confidence 999998888776 799999987654322 111 1 1346789999987 444443
No 252
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.34 E-value=2.8e-08 Score=90.36 Aligned_cols=243 Identities=17% Similarity=0.129 Sum_probs=147.3
Q ss_pred ceEEEEcc----CCeeEEEEeeecCccccCCCcceEEeeec--CCCceEEEEEcCCCCEEEEEeC-CCeEEEEECCC-Ce
Q 014154 124 RTLLTCTT----KGKASMRSIEVTKVSAESSCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDK-CE 195 (430)
Q Consensus 124 ~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~d~~~-~~ 195 (430)
..+.+... .+.+..+.+... .+.+...... .+.....++++|++++|+++.. +|.|.++++.. +.
T Consensus 49 ~~LY~~~e~~~~~g~v~~~~i~~~-------~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~ 121 (345)
T PF10282_consen 49 RRLYVVNEGSGDSGGVSSYRIDPD-------TGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS 121 (345)
T ss_dssp SEEEEEETTSSTTTEEEEEEEETT-------TTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE
T ss_pred CEEEEEEccccCCCCEEEEEECCC-------cceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc
Confidence 35555544 356666666532 1233333221 3455677999999999998874 89999999986 33
Q ss_pred eeEee--CCCC--CCCCCCcCCcceeEEEEeecCCCCEEEEEeC-CCcEEEEECCCCCcce---EEEee-cCCCeEEEEe
Q 014154 196 KIWTA--KPPP--KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRPV---MSFDF-RETPIKAVAE 266 (430)
Q Consensus 196 ~~~~~--~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~---~~~~~-~~~~i~~~~~ 266 (430)
..... ..+. .............++.| +|+++++++... ...|.+|++......+ ..+.. ....-+.++|
T Consensus 122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~--~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f 199 (345)
T PF10282_consen 122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVF--SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF 199 (345)
T ss_dssp EEEEEEEEESEEEESSTTTTSSTCEEEEEE---TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE
T ss_pred cceeeeecccCCCCCcccccccccceeEEE--CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE
Confidence 32221 1000 00000011245678888 899998877653 4579999998644212 22222 3456789999
Q ss_pred cCCCCEEEEEe-CCCcEEEEEcc--CCeE--EeeeeCC-----CCCCeEEEEecCCCCeEEEEe-CCCcEEEEECC--CC
Q 014154 267 EPDSFNIYIGN-GSGDLASVDIR--TGKL--LGCFIGK-----CSGSIRSIARHPTLPIIASCG-LDSYLRFWDIK--TR 333 (430)
Q Consensus 267 sp~~~~l~~~~-~d~~i~iwd~~--~~~~--~~~~~~~-----~~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~--~~ 333 (430)
+|+++++++.. .++.|.+|++. ++.. +..+... .......|.++|||++|+++. .++.|.+|++. ++
T Consensus 200 ~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g 279 (345)
T PF10282_consen 200 SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG 279 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT
T ss_pred cCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC
Confidence 99999887766 46789999988 4432 2222211 012578899999999887765 56789999993 34
Q ss_pred ceeeEEEeeccccceEEeeeccccccc--cccCCCCceEecCCCC
Q 014154 334 QLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGND 376 (430)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~ 376 (430)
.+...-..... ......++++|+|++ ++.-.++.|.+|+.+.
T Consensus 280 ~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 280 TLTLVQTVPTG-GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp TEEEEEEEEES-SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred ceEEEEEEeCC-CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 43322112221 223588999999998 4555788999998764
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=5.3e-10 Score=105.26 Aligned_cols=193 Identities=9% Similarity=-0.006 Sum_probs=126.0
Q ss_pred CCCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEE-EeCC
Q 014154 161 ASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTND 236 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~d 236 (430)
+...+....|+|+++.|+..+.+ ..|++||+.+++..... ... ..+....| +|+|+.|+. ...+
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~-~~~---------g~~~~~~~--SpDG~~la~~~~~~ 264 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT-NFE---------GLNGAPAW--SPDGSKLAFVLSKD 264 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc-CCC---------CCcCCeEE--CCCCCEEEEEEccC
Confidence 45678889999999999876644 36999999887654321 111 22345788 899988774 4445
Q ss_pred C--cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC-C--CcEEEEEccCCeEEeeeeCCCCCCeEEEEecC
Q 014154 237 H--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-S--GDLASVDIRTGKLLGCFIGKCSGSIRSIARHP 311 (430)
Q Consensus 237 g--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~ 311 (430)
+ .|++||+.++. ...+..+........|+|||+.|+..+. + ..|+++|+.+++....... ........|+|
T Consensus 265 g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~--~~~~~~~~~Sp 340 (430)
T PRK00178 265 GNPEIYVMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV--GNYNARPRLSA 340 (430)
T ss_pred CCceEEEEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC--CCCccceEECC
Confidence 5 58888998754 3445555556677899999998876654 3 3577888877765332221 22334578999
Q ss_pred CCCeEEEEeCC-C--cEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccC-CCCc--eEecCC
Q 014154 312 TLPIIASCGLD-S--YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAA-DAPM--LEIQNG 374 (430)
Q Consensus 312 ~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~-~d~~--i~~~~~ 374 (430)
+|++|+..+.+ + .|.+||+.+++... + .... ......|+|||+. +..+ .++. +.+++.
T Consensus 341 dg~~i~~~~~~~~~~~l~~~dl~tg~~~~-l-t~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 341 DGKTLVMVHRQDGNFHVAAQDLQRGSVRI-L-TDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred CCCEEEEEEccCCceEEEEEECCCCCEEE-c-cCCC---CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 99998877643 3 58899998876533 2 1111 1235689999998 4443 3333 444444
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.34 E-value=1.3e-09 Score=102.39 Aligned_cols=155 Identities=16% Similarity=0.131 Sum_probs=100.3
Q ss_pred EEEEEcCCCCEEEEE-eCCC--eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC-C--cE
Q 014154 166 AFSKVDISEKFSLFG-GKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-H--QV 239 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g--~i 239 (430)
.+++|+|+++.|+.. +.++ .|++||+.++.... +..+. .......| +|+++.|+..+.. + .|
T Consensus 237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~---------~~~~~~~~--s~dg~~l~~~s~~~g~~~i 304 (417)
T TIGR02800 237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGP---------GIDTEPSW--SPDGKSIAFTSDRGGSPQI 304 (417)
T ss_pred cceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCC---------CCCCCEEE--CCCCCEEEEEECCCCCceE
Confidence 346788888877643 3333 58889988765432 22221 22345578 7899988766543 3 57
Q ss_pred EEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCC---cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeE
Q 014154 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII 316 (430)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 316 (430)
+++|+.++. ...+..+...+..+.|+|++++|+.++.++ .|.+||+.++... .+... .......|+|++++|
T Consensus 305 y~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~--~~~~~p~~spdg~~l 379 (417)
T TIGR02800 305 YMMDADGGE--VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT--GLDESPSFAPNGRMI 379 (417)
T ss_pred EEEECCCCC--EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC--CCCCCceECCCCCEE
Confidence 888887644 344554556677889999999999888775 7999999876543 33322 233556899999988
Q ss_pred EEEeCCC---cEEEEECCCCceeeE
Q 014154 317 ASCGLDS---YLRFWDIKTRQLLSA 338 (430)
Q Consensus 317 ~s~~~dg---~i~iwd~~~~~~~~~ 338 (430)
+..+.++ .+++.+.. +.....
T Consensus 380 ~~~~~~~~~~~l~~~~~~-g~~~~~ 403 (417)
T TIGR02800 380 LYATTRGGRGVLGLVSTD-GRFRAR 403 (417)
T ss_pred EEEEeCCCcEEEEEEECC-CceeeE
Confidence 8776654 35555543 444444
No 255
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.34 E-value=1e-09 Score=89.50 Aligned_cols=234 Identities=11% Similarity=0.034 Sum_probs=150.8
Q ss_pred eeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCcc
Q 014154 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~ 146 (430)
+||.|+.-|...+|...+.+....+-.. +...+.-..-+-... ..+..++.++++++..+.....
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~-------snn~v~~~~r~cd~~-------~~~~i~sndht~k~~~~~~~s~- 150 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDV-------SNNDVTLVKRYCDLK-------FPLNIASNDHTGKTMVVSGDSN- 150 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecc-------cccchhhhhhhcccc-------cceeeccCCcceeEEEEecCcc-
Confidence 6999999999999998766543332211 111221111111111 3566788889888888764421
Q ss_pred ccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEe-eCCCCCCCCCCcCCcceeEEEEeec
Q 014154 147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWT-AKPPPKNSLGIFTPTWFTSAAFLSI 224 (430)
Q Consensus 147 ~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~ 224 (430)
.-.++. . .-.+.++++++++.++++.+....|..|.+.... .+.. ..... .+.-.+..| +
T Consensus 151 ------~~~~h~-~-~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t--------~D~gF~~S~--s 212 (344)
T KOG4532|consen 151 ------KFAVHN-Q-NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT--------SDHGFYNSF--S 212 (344)
T ss_pred ------cceeec-c-ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc--------CCCceeeee--c
Confidence 111111 1 1237889999999999999999999999986532 2222 11111 133455677 7
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCcceEE----EeecCCCeEEEEecCCC--CEEEEEeCCCcEEEEEccCCeEEeeee-
Q 014154 225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMS----FDFRETPIKAVAEEPDS--FNIYIGNGSGDLASVDIRTGKLLGCFI- 297 (430)
Q Consensus 225 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~i~~~~~sp~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~- 297 (430)
.....+|++..||++.|||++....|... -..|.+.+..+.|++-| .+|+..-.-+.+.+.|+|+++-.+.+.
T Consensus 213 ~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i 292 (344)
T KOG4532|consen 213 ENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI 292 (344)
T ss_pred cCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence 78889999999999999999986654433 23488999999999866 355555566889999999987654443
Q ss_pred ------CCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCc
Q 014154 298 ------GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (430)
Q Consensus 298 ------~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~ 334 (430)
.|....|....|+.++.-+.+.+++. +.-|++.+..
T Consensus 293 ~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~srs 334 (344)
T KOG4532|consen 293 PDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNILSRS 334 (344)
T ss_pred CccccccccccccccccccCCCcccccccchh-hheeeccccc
Confidence 22223477777877776666665543 5566665443
No 256
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.32 E-value=1e-09 Score=90.69 Aligned_cols=277 Identities=13% Similarity=0.153 Sum_probs=160.0
Q ss_pred CCceEEEEccCCCCCcceeeeecC-CCCCCcceeeeeecCCCCCc-eeEEeecCCeEEEecCCCCcccceeeccCCCCCC
Q 014154 23 LGLIKVIEARGEHGGVPKVVERWG-DPHSSNCVLAASIDDSQNDP-LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQ 100 (430)
Q Consensus 23 dg~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 100 (430)
-|.+.++++.... ... +.++. .....+..+-++.... +|. .|+-+...|.|.++..........+.++.....+
T Consensus 45 ~Gkl~Lys~~d~~--~~~-l~~~q~~dts~~~dm~w~~~~~-~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~ 120 (339)
T KOG0280|consen 45 SGKLHLYSLEDMK--LSP-LDTLQCTDTSTEFDMLWRIRET-DGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKIS 120 (339)
T ss_pred ccceEEEeecccc--cCc-cceeeeecccccceeeeeeccC-CccceeeeccccceEEEEeeccceeeeeecccchhhhh
Confidence 3677888877641 111 11111 1122222333333112 334 4666788899999987654444444443221111
Q ss_pred CCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-CCCEEEE
Q 014154 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLF 179 (430)
Q Consensus 101 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~ 179 (430)
-. ...++.+-... ..+++....|.+.+-..... .-..+..|. .|.-+++..+|+. +.+++++
T Consensus 121 ~~--~~lslD~~~~~--------~~i~vs~s~G~~~~v~~t~~------~le~vq~wk-~He~E~Wta~f~~~~pnlvyt 183 (339)
T KOG0280|consen 121 VV--EALSLDISTSG--------TKIFVSDSRGSISGVYETEM------VLEKVQTWK-VHEFEAWTAKFSDKEPNLVYT 183 (339)
T ss_pred he--eeeEEEeeccC--------ceEEEEcCCCcEEEEeccee------eeeeccccc-ccceeeeeeecccCCCceEEe
Confidence 00 11223333322 25666667776663332211 112344565 5677788888876 5578999
Q ss_pred EeCCCeEEEEECCC-CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecC
Q 014154 180 GGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE 258 (430)
Q Consensus 180 ~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 258 (430)
|+.|+.+..||++. ++.++. ... .|...|.++.-. +|.+.+|++|+.|-.|++||.++..+|+..-.. .
T Consensus 184 GgDD~~l~~~D~R~p~~~i~~--n~k------vH~~GV~SI~ss-~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~ 253 (339)
T KOG0280|consen 184 GGDDGSLSCWDIRIPKTFIWH--NSK------VHTSGVVSIYSS-PPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-G 253 (339)
T ss_pred cCCCceEEEEEecCCcceeee--cce------eeecceEEEecC-CCCCceEEEeccccceeeeehhcccCccccCcc-c
Confidence 99999999999983 333333 111 122557777665 567889999999999999999987777665443 3
Q ss_pred CCeEEEEecCCC--CEEEEEeCCCcEEEEEccCCe-----EEeeeeCCCCCCeEEEEecCCCCeEEEEe-CCCcEE-EEE
Q 014154 259 TPIKAVAEEPDS--FNIYIGNGSGDLASVDIRTGK-----LLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLR-FWD 329 (430)
Q Consensus 259 ~~i~~~~~sp~~--~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~-iwd 329 (430)
+.|..+.++|.- ..|+++-..| .+|-+...+. .......| .+-++.-.|.....+|+|++ .|+.++ +|-
T Consensus 254 GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~h-dSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 254 GGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIH-DSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred cceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccc-cceeeccccccccceeeeeeccccceeeeee
Confidence 789999999854 2344443344 5666554332 23344555 66777778855556788876 555544 554
Q ss_pred CCC
Q 014154 330 IKT 332 (430)
Q Consensus 330 ~~~ 332 (430)
.-+
T Consensus 332 ~~t 334 (339)
T KOG0280|consen 332 HIT 334 (339)
T ss_pred ecc
Confidence 333
No 257
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.32 E-value=3.4e-11 Score=120.87 Aligned_cols=186 Identities=15% Similarity=0.185 Sum_probs=150.6
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 242 (430)
..+.++.-+|...+.++|+.||.+++|....++.+..+.... +..|+.+.| +..|+.+..+..||.+.+|
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g--------~s~vtr~~f--~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG--------NSRVTRSRF--NHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC--------cchhhhhhh--cccCCceeeeccCCceeec
Confidence 567788889999999999999999999999888877665432 266888899 7889999999999999999
Q ss_pred ECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe---CCCcEEEEEccCCe---EEeeeeCCCCCCeEEEEecCCCCeE
Q 014154 243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN---GSGDLASVDIRTGK---LLGCFIGKCSGSIRSIARHPTLPII 316 (430)
Q Consensus 243 d~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~---~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l 316 (430)
... .++....+.|......+.|-. ..+++++ .++.+.+||.--.. ++. ..| .+.++++++-|..+.|
T Consensus 2279 q~~--pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H-~~gaT~l~~~P~~qll 2351 (2439)
T KOG1064|consen 2279 QAS--PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCH-DGGATVLAYAPKHQLL 2351 (2439)
T ss_pred ccC--CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eec-CCCceEEEEcCcceEE
Confidence 988 346888888988888888864 5666654 46889999975322 233 555 8899999999999999
Q ss_pred EEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCCC
Q 014154 317 ASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDT 377 (430)
Q Consensus 317 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~ 377 (430)
++||.+|.|++||++..++++.+. . +.....++.++..|.++||+....
T Consensus 2352 isggr~G~v~l~D~rqrql~h~~~--~----------~~~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQRQLRHTFQ--A----------LDTREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred EecCCcCcEEEeehHHHHHHHHhh--h----------hhhhheeeccCcccceEEEEcccc
Confidence 999999999999999888887642 1 333334489999999999998774
No 258
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=2.9e-09 Score=100.32 Aligned_cols=169 Identities=14% Similarity=0.098 Sum_probs=103.7
Q ss_pred EEEEcCCCCEEEE-EeCCC--eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-CC--cEE
Q 014154 167 FSKVDISEKFSLF-GGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH--QVR 240 (430)
Q Consensus 167 ~~~~~~~~~~l~~-~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~ 240 (430)
...|+|+++.|+. ...++ .|++||+.++.... +..+. .......| +|+++.|+..+. ++ .|+
T Consensus 247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~---------~~~~~~~~--spDg~~i~f~s~~~g~~~iy 314 (430)
T PRK00178 247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHP---------AIDTEPFW--GKDGRTLYFTSDRGGKPQIY 314 (430)
T ss_pred CeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCC---------CCcCCeEE--CCCCCEEEEEECCCCCceEE
Confidence 4678888887764 33444 58888998765432 22221 22345678 899988776654 33 577
Q ss_pred EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC-C--cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-G--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 317 (430)
++|+.+++. ..+...........|+|++++|+..+.+ + .|.+||+.+++.. .+.. ........|+|+|++|+
T Consensus 315 ~~d~~~g~~--~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~--~~~~~~p~~spdg~~i~ 389 (430)
T PRK00178 315 KVNVNGGRA--ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD--TSLDESPSVAPNGTMLI 389 (430)
T ss_pred EEECCCCCE--EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC--CCCCCCceECCCCCEEE
Confidence 778876542 2332222334467899999999877643 2 5888999887653 2322 11223568999999887
Q ss_pred EEeCC---CcEEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154 318 SCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 318 s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~ 356 (430)
..+.+ ..|+++++. +..... +..+ ...+...+|+|
T Consensus 390 ~~~~~~g~~~l~~~~~~-g~~~~~--l~~~-~g~~~~p~ws~ 427 (430)
T PRK00178 390 YATRQQGRGVLMLVSIN-GRVRLP--LPTA-QGEVREPSWSP 427 (430)
T ss_pred EEEecCCceEEEEEECC-CCceEE--CcCC-CCCcCCCccCC
Confidence 77644 347777775 333333 2222 23356677776
No 259
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=7.5e-10 Score=103.95 Aligned_cols=193 Identities=11% Similarity=0.037 Sum_probs=122.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEE-EeCCC
Q 014154 162 SGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDH 237 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~dg 237 (430)
...+....|+|+++.|+..+.+ ..|++||+.+++.... .... ......+| +|+++.|+. .+.++
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~---------g~~~~~~w--SPDG~~La~~~~~~g 284 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFP---------GINGAPRF--SPDGKKLALVLSKDG 284 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCC---------CCcCCeeE--CCCCCEEEEEEeCCC
Confidence 4567789999999999876543 2589999987764322 1111 12335678 899997765 45566
Q ss_pred c--EEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC-CC--cEEEEEccCCeEEeeeeCCCCCCeEEEEecCC
Q 014154 238 Q--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 238 ~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~ 312 (430)
. |+++|+.++. ...+..+.......+|+||+++|+..+. ++ .|+++|+.+++.... ... ........|+|+
T Consensus 285 ~~~Iy~~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~-g~~~~~~~~SpD 360 (448)
T PRK04792 285 QPEIYVVDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFE-GEQNLGGSITPD 360 (448)
T ss_pred CeEEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecC-CCCCcCeeECCC
Confidence 4 7788887654 4455555556678899999998876653 33 477778877765432 211 223345789999
Q ss_pred CCeEEEEeCC-C--cEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cc-cCCCCc--eEecCCC
Q 014154 313 LPIIASCGLD-S--YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NA-AADAPM--LEIQNGN 375 (430)
Q Consensus 313 ~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~-~~~d~~--i~~~~~~ 375 (430)
|++|+..+.+ + .|.++|+.+++... + .... ......|+|||+. +. ...++. +.+++.+
T Consensus 361 G~~l~~~~~~~g~~~I~~~dl~~g~~~~-l-t~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 361 GRSMIMVNRTNGKFNIARQDLETGAMQV-L-TSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred CCEEEEEEecCCceEEEEEECCCCCeEE-c-cCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 9988776543 3 46667888776533 2 1111 1235689999997 43 334444 4444443
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=2.6e-09 Score=100.32 Aligned_cols=169 Identities=13% Similarity=0.104 Sum_probs=103.4
Q ss_pred EEEEcCCCCEEEE-EeCCCe--EEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-CC--cEE
Q 014154 167 FSKVDISEKFSLF-GGKGVE--VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH--QVR 240 (430)
Q Consensus 167 ~~~~~~~~~~l~~-~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~ 240 (430)
..+|+|+++.|+. ...++. |+++|+.+++... +..+. .......| +|+++.|+..+. ++ .|.
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~---------~~~~~p~w--SpDG~~I~f~s~~~g~~~Iy 333 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-ITRHR---------AIDTEPSW--HPDGKSLIFTSERGGKPQIY 333 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccCC---------CCccceEE--CCCCCEEEEEECCCCCceEE
Confidence 4578888887765 455554 8888887765432 22221 23456678 899998776654 33 466
Q ss_pred EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC-C--cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-G--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 317 (430)
++|+.+++. ..+..........+|+|||++|+..+.+ + .|.++|+.+++.. .+... .......|+|+|++|+
T Consensus 334 ~~dl~~g~~--~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~--~~d~~ps~spdG~~I~ 408 (448)
T PRK04792 334 RVNLASGKV--SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST--RLDESPSVAPNGTMVI 408 (448)
T ss_pred EEECCCCCE--EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC--CCCCCceECCCCCEEE
Confidence 777776542 3332222334457899999998876553 3 4666788887653 23321 1223457999999877
Q ss_pred EEeCC-C--cEEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154 318 SCGLD-S--YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 318 s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~ 356 (430)
..+.+ + .+++++. +|.....+ ..+ ...+...+|+|
T Consensus 409 ~~~~~~g~~~l~~~~~-~G~~~~~l--~~~-~g~~~~p~Wsp 446 (448)
T PRK04792 409 YSTTYQGKQVLAAVSI-DGRFKARL--PAG-QGEVKSPAWSP 446 (448)
T ss_pred EEEecCCceEEEEEEC-CCCceEEC--cCC-CCCcCCCccCC
Confidence 66543 3 3777786 45555553 233 23356778887
No 261
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.6e-08 Score=94.30 Aligned_cols=179 Identities=12% Similarity=0.046 Sum_probs=110.5
Q ss_pred CceEEEEEcCCCCEEEEEeC-CC----eEEEEECCCC---eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe
Q 014154 163 GTIAFSKVDISEKFSLFGGK-GV----EVNVWDLDKC---EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT 234 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~-d~----~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 234 (430)
+.....+|+|+|+.|+..+. +| .+..|++..+ .......... ......+| +|||+.|+..+
T Consensus 231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~---------~~~~~p~w--SPDG~~Laf~s 299 (428)
T PRK01029 231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF---------GTQGNPSF--SPDGTRLVFVS 299 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC---------CCcCCeEE--CCCCCEEEEEE
Confidence 34456899999998887653 22 2344666542 2111111110 22345688 89999877665
Q ss_pred -CCCcEEEE--ECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC---CcEEEEEccCCeEEeeeeCCCCCCeEEEE
Q 014154 235 -NDHQVRLY--DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIGKCSGSIRSIA 308 (430)
Q Consensus 235 -~dg~i~iw--d~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~i~ 308 (430)
.+|...+| ++.........+..+...+....|+|||++|+..+.+ ..|.+||+.+++... +... ...+....
T Consensus 300 ~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~-~~~~~~p~ 377 (428)
T PRK01029 300 NKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTS-PENKESPS 377 (428)
T ss_pred CCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCC-CCCccceE
Confidence 46655555 4432112234454455567789999999988876543 469999998887643 3332 34567899
Q ss_pred ecCCCCeEEEEeC---CCcEEEEECCCCceeeEEEeeccccceEEeeeccccc
Q 014154 309 RHPTLPIIASCGL---DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE 358 (430)
Q Consensus 309 ~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 358 (430)
|+|||++|+..+. ...|+++|+.+++..... .+ ...+...+|+|-.
T Consensus 378 wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt--~~--~g~~~~p~Ws~~~ 426 (428)
T PRK01029 378 WAIDSLHLVYSAGNSNESELYLISLITKKTRKIV--IG--SGEKRFPSWGAFP 426 (428)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEEee--cC--CCcccCceecCCC
Confidence 9999998775433 356899999877655432 11 2224567777643
No 262
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.27 E-value=1.7e-08 Score=89.01 Aligned_cols=144 Identities=15% Similarity=0.134 Sum_probs=105.7
Q ss_pred ecCCCceEEEEEcCCCCEEEEEeCCC-eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC
Q 014154 159 VCASGTIAFSKVDISEKFSLFGGKGV-EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH 237 (430)
Q Consensus 159 ~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 237 (430)
+.+.+.|.-..+..+++-++.|..|| .+-+||.++++........ +.|.++.. +++|..++.+....
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~l----------g~I~av~v--s~dGK~~vvaNdr~ 423 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDL----------GNIEAVKV--SPDGKKVVVANDRF 423 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCc----------cceEEEEE--cCCCcEEEEEcCce
Confidence 45566677777877788899999999 8999999988755443332 56888898 89999999999999
Q ss_pred cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCC----cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC
Q 014154 238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG----DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (430)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~ 313 (430)
.|.+.|+.++.. ...-+...+-|+.+.|||++++||-+--+| .|++||+..++....-.. .+.=.+-+|.|++
T Consensus 424 el~vididngnv-~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~--ta~DfsPaFD~d~ 500 (668)
T COG4946 424 ELWVIDIDNGNV-RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP--TAYDFSPAFDPDG 500 (668)
T ss_pred EEEEEEecCCCe-eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC--cccccCcccCCCC
Confidence 999999999763 333344567899999999999999887665 589999988776433322 2222334555555
Q ss_pred CeEE
Q 014154 314 PIIA 317 (430)
Q Consensus 314 ~~l~ 317 (430)
++|.
T Consensus 501 ryLY 504 (668)
T COG4946 501 RYLY 504 (668)
T ss_pred cEEE
Confidence 5443
No 263
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=8.2e-10 Score=101.82 Aligned_cols=287 Identities=14% Similarity=0.127 Sum_probs=188.1
Q ss_pred CCCcccCCCCC--CCcceeeecCCCceEEEEccCCC-----CC-----cceeeeecCCCCCCcceeeeeecCCCCCceeE
Q 014154 2 PRTTTLECPGC--PPLRALTFDSLGLIKVIEARGEH-----GG-----VPKVVERWGDPHSSNCVLAASIDDSQNDPLLA 69 (430)
Q Consensus 2 ~~~~~~~~~~~--~~~~l~t~~~dg~i~vw~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~ 69 (430)
|.-..|.|..- ....+++|++||.++|-.+.+.. .+ ...+-+++.+|...|.++.++- +.+.|-
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe----~~QKLT 87 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE----NNQKLT 87 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc----cccccc
Confidence 34444444433 23778999999999999886532 11 2234467889999976666544 345688
Q ss_pred EeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccC
Q 014154 70 VARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAES 149 (430)
Q Consensus 70 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~ 149 (430)
+...+|.|.||-+-.|.-..++..- ....+.....|+.+. ..+.....||.+.|-+++.
T Consensus 88 tSDt~GlIiVWmlykgsW~EEMiNn-------RnKSvV~SmsWn~dG-------~kIcIvYeDGavIVGsvdG------- 146 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEMINN-------RNKSVVVSMSWNLDG-------TKICIVYEDGAVIVGSVDG------- 146 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHHhhC-------cCccEEEEEEEcCCC-------cEEEEEEccCCEEEEeecc-------
Confidence 8999999999998777655544321 112333334455544 4777788888888877652
Q ss_pred CCcceEEeeecCC-CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-------eeEeeCCCCCCCCCCcCCcceeEEEE
Q 014154 150 SCSTVKSWNVCAS-GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-------KIWTAKPPPKNSLGIFTPTWFTSAAF 221 (430)
Q Consensus 150 ~~~~i~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~ 221 (430)
-++|...-. .....+.|+++...++.+-.+|.+.+||....- +.....+.. . .-+..|..+.|
T Consensus 147 ----NRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~---s--~~~~kia~i~w 217 (1189)
T KOG2041|consen 147 ----NRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIF---S--NFPTKIAEIEW 217 (1189)
T ss_pred ----ceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeee---c--CCCccccceee
Confidence 256654332 335578899999999989999999999975321 101100000 0 00122344444
Q ss_pred e------ecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC---------CcEEEEE
Q 014154 222 L------SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---------GDLASVD 286 (430)
Q Consensus 222 ~------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---------~~i~iwd 286 (430)
. ..|+...|+++..+|.+.|-.-.+...|+..-.+ ..+..+.|+++|..|++++.+ +.|.+|.
T Consensus 218 ~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys 295 (1189)
T KOG2041|consen 218 NTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS 295 (1189)
T ss_pred ccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEec
Confidence 3 1568889999999999998766555555554443 678999999999999998765 3566665
Q ss_pred ccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEE
Q 014154 287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF 327 (430)
Q Consensus 287 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~i 327 (430)
. -|+.+.+++.. ...|++++|-..|-.++.+ .|+.|++
T Consensus 296 p-~G~i~gtlkvp-g~~It~lsWEg~gLriA~A-vdsfiyf 333 (1189)
T KOG2041|consen 296 P-YGHIVGTLKVP-GSCITGLSWEGTGLRIAIA-VDSFIYF 333 (1189)
T ss_pred c-chhheEEEecC-CceeeeeEEcCCceEEEEE-ecceEEE
Confidence 4 67778888876 7789999998777665554 3444433
No 264
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.25 E-value=7.5e-09 Score=95.74 Aligned_cols=259 Identities=14% Similarity=0.104 Sum_probs=154.5
Q ss_pred CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
..+++.++.+|.+..+|..++ +++-..... .. +.+... -.+..++.+..+|.|..||..+|+.+..+..
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG-----~~~W~~~~~-~~--~~~~p~---v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDG-----KELWRAKLS-SE--VLSPPL---VANGLVVVRTNDGRLTALDAATGERLWTYSR 173 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCC-----cEeeeeccC-ce--eecCCE---EECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence 467888899999999999887 444332221 11 111000 0134577788899999999999998776654
Q ss_pred cCCCC-CCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCc--------
Q 014154 94 AGDSG-AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT-------- 164 (430)
Q Consensus 94 ~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~-------- 164 (430)
..+.. ......++ +.+ +.++.+..++.+..+++.... .+|.......
T Consensus 174 ~~~~~~~~~~~sp~----~~~----------~~v~~~~~~g~v~ald~~tG~----------~~W~~~~~~~~g~~~~~~ 229 (377)
T TIGR03300 174 VTPALTLRGSASPV----IAD----------GGVLVGFAGGKLVALDLQTGQ----------PLWEQRVALPKGRTELER 229 (377)
T ss_pred CCCceeecCCCCCE----EEC----------CEEEEECCCCEEEEEEccCCC----------EeeeeccccCCCCCchhh
Confidence 21100 00000011 111 355666666766655543221 1333211000
Q ss_pred eEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154 165 IAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 165 i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 242 (430)
+..+.-+| .+..+++++.+|.++.||..+++.++...... ...... .+..++.++.+|.|..+
T Consensus 230 ~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-----------~~~p~~----~~~~vyv~~~~G~l~~~ 294 (377)
T TIGR03300 230 LVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-----------YQGPAV----DDNRLYVTDADGVVVAL 294 (377)
T ss_pred hhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-----------ccCceE----eCCEEEEECCCCeEEEE
Confidence 00010111 35678888899999999999999888765211 111222 45678888899999999
Q ss_pred ECCCCCcceEEEee-cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeE-EEEecCCCCeEEEEe
Q 014154 243 DTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR-SIARHPTLPIIASCG 320 (430)
Q Consensus 243 d~~~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~l~s~~ 320 (430)
|..+++. +..... ......+... .+..|++++.+|.|+++|..+++.+..+..+ ...+. ...+. + ..|+.++
T Consensus 295 d~~tG~~-~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~-~~~~~~sp~~~-~-~~l~v~~ 368 (377)
T TIGR03300 295 DRRSGSE-LWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTD-GSGIASPPVVV-G-DGLLVQT 368 (377)
T ss_pred ECCCCcE-EEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC-CCccccCCEEE-C-CEEEEEe
Confidence 9988763 333311 1112222222 3568999999999999999999999988865 33332 22332 3 3588888
Q ss_pred CCCcEEEE
Q 014154 321 LDSYLRFW 328 (430)
Q Consensus 321 ~dg~i~iw 328 (430)
.||.|+.|
T Consensus 369 ~dG~l~~~ 376 (377)
T TIGR03300 369 RDGDLYAF 376 (377)
T ss_pred CCceEEEe
Confidence 99998876
No 265
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=4.1e-11 Score=100.97 Aligned_cols=164 Identities=13% Similarity=0.184 Sum_probs=120.9
Q ss_pred EEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC----CcceEE
Q 014154 178 LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ----RRPVMS 253 (430)
Q Consensus 178 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~ 253 (430)
++.+.+..|.+-|++++-...- .. .+.|.++.| ...+++++.|+.+|.|..+|++.. ..+.+.
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf-~s----------ksDVfAlQf--~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSF-QS----------KSDVFALQF--AGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred ecccccceeEEEEeeccccccc-cc----------chhHHHHHh--cccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 4556666888889887644321 11 156888888 556789999999999999999974 222333
Q ss_pred EeecCCCeEEEEecC-CCCEEEEEeCCCcEEEEEccCCeE---EeeeeCCCCCCeEE--EEecCCCCeEEEEeCCCcEEE
Q 014154 254 FDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKL---LGCFIGKCSGSIRS--IARHPTLPIIASCGLDSYLRF 327 (430)
Q Consensus 254 ~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~--i~~~~~~~~l~s~~~dg~i~i 327 (430)
+ .|.+.|+++..-. ++++|++.+.+|.|.+||++.-++ +.++.+| -..-.- +-.++....+++++.|...||
T Consensus 295 l-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH-vN~~a~l~~~v~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 295 L-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH-VNLSAYLPAHVKEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred E-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecc-cccccccccccccccceEEEccCeeEEEE
Confidence 3 3778999988765 678999999999999999998777 8899988 332222 233456678899999999999
Q ss_pred EECCCCceeeEEEeeccccc-eEEeeeccc
Q 014154 328 WDIKTRQLLSAVFLKQHLNE-VVFDSAFAD 356 (430)
Q Consensus 328 wd~~~~~~~~~~~~~~~~~~-~v~~~~~s~ 356 (430)
|.++.|.++.++.++..... .+.+++|..
T Consensus 373 Wsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 373 WSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred EecccCceeeccCCCCccccccccceehhc
Confidence 99999999998665443322 356666654
No 266
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.25 E-value=1.7e-08 Score=89.80 Aligned_cols=308 Identities=11% Similarity=0.042 Sum_probs=182.5
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCe---------------EEE
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGL---------------TDI 79 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~---------------i~i 79 (430)
.+.+....---|.+|.-... ..+.++. |.. |. .+.+ +|.++||.+-+..+. +.+
T Consensus 44 G~~l~~~~~~~V~~~~g~~~-----~~l~~~~-~~~-V~--~~~f--SP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~v 112 (561)
T COG5354 44 GTYLFSEHAAGVECWGGPSK-----AKLVRFR-HPD-VK--YLDF--SPNEKYLVTWSREPIIEPEIEISPFTSKNNVFV 112 (561)
T ss_pred chheehhhccceEEccccch-----hheeeee-cCC-ce--eccc--CcccceeeeeccCCccChhhccCCccccCceeE
Confidence 44444444456888887765 3333333 322 22 2333 788899998655444 899
Q ss_pred ecCCCCcccceeeccCCCCCCCCCCc-eEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEee
Q 014154 80 LNPLNGDLRVAISNAGDSGAQPEDDG-IVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN 158 (430)
Q Consensus 80 wd~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~ 158 (430)
||..+|..+..+...... .... + +. |.... .+++-..++.+.|+.+. ..+. ....+...
T Consensus 113 wd~~sg~iv~sf~~~~q~----~~~Wp~--~k-~s~~D--------~y~ARvv~~sl~i~e~t--~n~~---~~p~~~lr 172 (561)
T COG5354 113 WDIASGMIVFSFNGISQP----YLGWPV--LK-FSIDD--------KYVARVVGSSLYIHEIT--DNIE---EHPFKNLR 172 (561)
T ss_pred EeccCceeEeeccccCCc----ccccce--ee-eeecc--------hhhhhhccCeEEEEecC--Cccc---cCchhhcc
Confidence 999999988887763211 0011 2 12 22221 33333456677777751 1111 11111111
Q ss_pred ecCCCceEEEEEcCCC--CEEEE-----EeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE
Q 014154 159 VCASGTIAFSKVDISE--KFSLF-----GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (430)
Q Consensus 159 ~~~~~~i~~~~~~~~~--~~l~~-----~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 231 (430)
...|....++|.+ ..|+. ....+++++|.+..+..+.+-.... ..-..+.| ++.|.+|+
T Consensus 173 ---~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk---------~~~~qLkW--~~~g~~ll 238 (561)
T COG5354 173 ---PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK---------VSGVQLKW--QVLGKYLL 238 (561)
T ss_pred ---ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe---------ecccEEEE--ecCCceEE
Confidence 2457777888853 33443 4456788999887555443322211 11123445 56666554
Q ss_pred EEe-----------CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe--CCCcEEEEEccCCeEEeeeeC
Q 014154 232 AGT-----------NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN--GSGDLASVDIRTGKLLGCFIG 298 (430)
Q Consensus 232 s~~-----------~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~ 298 (430)
+-. ....++|+++.....++ ...-.++|...+|.|.++.+++.+ .+-.+.++|++.. +...+.
T Consensus 239 ~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V--~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P- 314 (561)
T COG5354 239 VLVMTHTKSNKSYFGESNLYLLRITERSIPV--EKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP- 314 (561)
T ss_pred EEEEEeeecccceeccceEEEEeecccccce--eccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC-
Confidence 311 13467888888533322 224568999999999987776554 6788999999776 444443
Q ss_pred CCCCCeEEEEecCCCCeEEEEeCC---CcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-ccc--C----CCCc
Q 014154 299 KCSGSIRSIARHPTLPIIASCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAA--A----DAPM 368 (430)
Q Consensus 299 ~~~~~v~~i~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~--~----~d~~ 368 (430)
...=+.+.|+|.+++++.++.| |.+-+||......+..- +.+. ...-+.|+||+.+ .+. + -|+.
T Consensus 315 --e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~-~~~~---n~s~~~wspd~qF~~~~~ts~k~~~Dn~ 388 (561)
T COG5354 315 --EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGA-FNGL---NTSYCDWSPDGQFYDTDTTSEKLRVDNS 388 (561)
T ss_pred --CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEE-eecC---CceEeeccCCceEEEecCCCcccccCcc
Confidence 3455778899999999998876 67999998866555422 3333 1345789999998 222 2 2678
Q ss_pred eEecCCCCC
Q 014154 369 LEIQNGNDT 377 (430)
Q Consensus 369 i~~~~~~~~ 377 (430)
+.+|+....
T Consensus 389 i~l~~v~g~ 397 (561)
T COG5354 389 IKLWDVYGA 397 (561)
T ss_pred eEEEEecCc
Confidence 999987543
No 267
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.23 E-value=8.8e-10 Score=93.03 Aligned_cols=255 Identities=11% Similarity=0.138 Sum_probs=169.8
Q ss_pred ceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCC-CCcccceeeccCCCCCCCCCCceEEEEEeecCcc
Q 014154 39 PKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQRE 117 (430)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 117 (430)
+.++..+.+|.+.++...+-. -.+-+++.+.|.+++||--. .++.-..+....+ .+...+.... +.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~----~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP-------~~~~~~~y~~-e~- 80 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIP----KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMP-------SPCSAMEYVS-ES- 80 (404)
T ss_pred hhhhhhhcCchhhhhhheecc----CCCCeEEccccceeeeEEeccccccCchhhhhCC-------CCceEeeeec-cc-
Confidence 356677888877765444332 33459999999999999432 3443333332222 2344333333 22
Q ss_pred cccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 014154 118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI 197 (430)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 197 (430)
..++.+...|++.-+.++..-. .-..++.|. .|...+..+-|+-...++++.+.|..+.-.-.+.+..+
T Consensus 81 ------~~L~vg~~ngtvtefs~sedfn----km~~~r~~~-~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~l 149 (404)
T KOG1409|consen 81 ------RRLYVGQDNGTVTEFALSEDFN----KMTFLKDYL-AHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRL 149 (404)
T ss_pred ------eEEEEEEecceEEEEEhhhhhh----hcchhhhhh-hhhcceeeEEecCCceeEEEeccccceEEEeeccCCcc
Confidence 4788888888888777653221 111344443 67888999999988999999999976654444444433
Q ss_pred EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC-CCcceEEEeecCCCeEEEEecCCCCEEEEE
Q 014154 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-QRRPVMSFDFRETPIKAVAEEPDSFNIYIG 276 (430)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~ 276 (430)
..+.-. .+.+++.| +-.+...|...|.|.+..+.. .-.++..+.+|.+.+.+++|.|....|++|
T Consensus 150 g~Y~~~----------~~~t~~~~----d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg 215 (404)
T KOG1409|consen 150 GGYNFE----------TPASALQF----DALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSG 215 (404)
T ss_pred cceEee----------ccCCCCce----eeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEec
Confidence 222111 11222222 111455566666666555432 223678899999999999999999999999
Q ss_pred eCCCcEEEEEccCCeE-EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154 277 NGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 277 ~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~ 332 (430)
..|..+.+||+--.+- ..++.+| ...|..+..-+--+.|++++.||.|-+|+.+.
T Consensus 216 ~~d~~vi~wdigg~~g~~~el~gh-~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 216 ASDHSVIMWDIGGRKGTAYELQGH-NDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred cccCceEEEeccCCcceeeeeccc-hhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 9999999999965443 4567777 78899888888888999999999999999864
No 268
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.21 E-value=1.7e-07 Score=83.34 Aligned_cols=259 Identities=13% Similarity=0.095 Sum_probs=152.5
Q ss_pred CeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEc---------cCCeeEEEEeeecCc
Q 014154 75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT---------TKGKASMRSIEVTKV 145 (430)
Q Consensus 75 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~g~~~v~~~~~~~~ 145 (430)
++|.+.|..+++.+..+..- +.|+ .+ +.+... ...++.+ .+..+.|++.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G----~~P~-----~~-~spDg~-------~lyva~~~~~R~~~G~~~d~V~v~D~~t~~- 88 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGG----FLPN-----PV-VASDGS-------FFAHASTVYSRIARGKRTDYVEVIDPQTHL- 88 (352)
T ss_pred ceEEEEECCCCEEEEEEEcc----CCCc-----ee-ECCCCC-------EEEEEeccccccccCCCCCEEEEEECccCc-
Confidence 89999999998888777641 1111 11 222222 2334444 56778888876443
Q ss_pred cccCCCcceEEeeec------CCCceEEEEEcCCCCEEEEEe-C-CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCccee
Q 014154 146 SAESSCSTVKSWNVC------ASGTIAFSKVDISEKFSLFGG-K-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT 217 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~------~~~~i~~~~~~~~~~~l~~~~-~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 217 (430)
.+.-..+. .......++++|+|++|++.. . ++.|.+.|+.+++.+.++.... .
T Consensus 89 -------~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~------------~ 149 (352)
T TIGR02658 89 -------PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD------------C 149 (352)
T ss_pred -------EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC------------C
Confidence 22222211 112334788999999999766 3 6899999999999988876532 0
Q ss_pred EEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc-eEEEe-ecC--CCeE-EEEecC-CCCEEEEEeCCCcEEEEEccCC-
Q 014154 218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP-VMSFD-FRE--TPIK-AVAEEP-DSFNIYIGNGSGDLASVDIRTG- 290 (430)
Q Consensus 218 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~-~~~--~~i~-~~~~sp-~~~~l~~~~~d~~i~iwd~~~~- 290 (430)
...|. ..+...+ +-+.||......+...... ..... .+. .++. .-.|.+ +++++++..+ |.|.+.|+...
T Consensus 150 ~~vy~-t~e~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~ 226 (352)
T TIGR02658 150 YHIFP-TANDTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGD 226 (352)
T ss_pred cEEEE-ecCCccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCc
Confidence 11111 1222222 2234555544433322110 11111 011 0110 003455 8888888776 99999996433
Q ss_pred ----eEEeeeeCC------CCCCeEEEEecCCCCeEEEEe----------CCCcEEEEECCCCceeeEEEeeccccceEE
Q 014154 291 ----KLLGCFIGK------CSGSIRSIARHPTLPIIASCG----------LDSYLRFWDIKTRQLLSAVFLKQHLNEVVF 350 (430)
Q Consensus 291 ----~~~~~~~~~------~~~~v~~i~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 350 (430)
+....+... ..+.+.-++++|+++.++... ..+.|.++|..+++.+..+.. ...++
T Consensus 227 ~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v----G~~~~ 302 (352)
T TIGR02658 227 AKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL----GHEID 302 (352)
T ss_pred ceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC----CCcee
Confidence 223222211 123344599999998888753 124799999999999998643 23468
Q ss_pred eeecccccc-c--cccCCCCceEecCCCCC
Q 014154 351 DSAFADKEV-A--NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 351 ~~~~s~~g~-~--~~~~~d~~i~~~~~~~~ 377 (430)
.++++|||+ + ++...++.|.++|....
T Consensus 303 ~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 303 SINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred eEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 999999999 5 34446788999997664
No 269
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=4e-09 Score=98.31 Aligned_cols=197 Identities=11% Similarity=-0.030 Sum_probs=119.4
Q ss_pred CceEEEEEcCCCCE--E-EEEeCC--CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-C
Q 014154 163 GTIAFSKVDISEKF--S-LFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-D 236 (430)
Q Consensus 163 ~~i~~~~~~~~~~~--l-~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d 236 (430)
.....-.|+|+|+. + ++...+ ..|++.++.+++....... . ......+| +|||+.|+..+. +
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-~---------g~~~~p~w--SPDG~~Laf~s~~~ 252 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-Q---------GNQLMPTF--SPRKKLLAFISDRY 252 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC-C---------CCccceEE--CCCCCEEEEEECCC
Confidence 44567799999875 2 233333 3588889887654332221 1 22345678 899988887553 2
Q ss_pred C----cEEEEECCCC--CcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEE--EccC-CeEEeeeeCCCCCCeEE
Q 014154 237 H----QVRLYDTSAQ--RRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASV--DIRT-GKLLGCFIGKCSGSIRS 306 (430)
Q Consensus 237 g----~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iw--d~~~-~~~~~~~~~~~~~~v~~ 306 (430)
| .+.+|++..+ ..+......+.......+|+|||+.|+..+ .+|...+| ++.. +.....+..+ ...+..
T Consensus 253 g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~-~~~~~~ 331 (428)
T PRK01029 253 GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK-YRNSSC 331 (428)
T ss_pred CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC-CCCccc
Confidence 2 3444776642 222333333323456789999999877665 45654454 5432 2233444443 456778
Q ss_pred EEecCCCCeEEEEeCC---CcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cc-cCC--CCceEecCCCC
Q 014154 307 IARHPTLPIIASCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NA-AAD--APMLEIQNGND 376 (430)
Q Consensus 307 i~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~-~~~--d~~i~~~~~~~ 376 (430)
..|+|||++|+..+.+ ..|.+||+.+++.... ..+ ...+....|+|||+. +. +.. ...|.+++...
T Consensus 332 p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L--t~~--~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 332 PAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL--TTS--PENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred eeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc--cCC--CCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 8999999988876543 3699999998876543 212 223467899999987 33 332 34566666544
No 270
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.20 E-value=1.3e-08 Score=83.22 Aligned_cols=222 Identities=9% Similarity=-0.005 Sum_probs=143.7
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEE-cCCCCEEEEEeCCCeEEEEECCCCeeeEeeCC
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV-DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~-~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 202 (430)
..++.++..|...+|++... ++..++.+... ..|.-+.- .-..-.+..++.|.++++.+++.+........
T Consensus 85 ~~la~gG~~g~fd~~~~~tn-------~~h~~~cd~sn-n~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~ 156 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTN-------DGHLYQCDVSN-NDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN 156 (344)
T ss_pred cEEEeccccceeeeecccCc-------ccceeeecccc-cchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec
Confidence 46777778888888886533 33555554322 21111110 11223456688888999888865433322222
Q ss_pred CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEE--EeecCCCeEEEEecCCCCEEEEEeCCC
Q 014154 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS--FDFRETPIKAVAEEPDSFNIYIGNGSG 280 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~~i~~~~~sp~~~~l~~~~~d~ 280 (430)
.. -.+.++++ ++++.++++.+....|..|.+......+.. ....+..-.+..|+.....+|+++.||
T Consensus 157 ~~---------~~~ns~~~--snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg 225 (344)
T KOG4532|consen 157 QN---------LTQNSLHY--SNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDG 225 (344)
T ss_pred cc---------cceeeeEE--cCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCC
Confidence 11 12667778 899999999999999999999864433332 222344567889999999999999999
Q ss_pred cEEEEEccCCeEE----eeeeCCCCCCeEEEEecCCCC--eEEEEeCCCcEEEEECCCCceeeEEEeec-----cccceE
Q 014154 281 DLASVDIRTGKLL----GCFIGKCSGSIRSIARHPTLP--IIASCGLDSYLRFWDIKTRQLLSAVFLKQ-----HLNEVV 349 (430)
Q Consensus 281 ~i~iwd~~~~~~~----~~~~~~~~~~v~~i~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~v 349 (430)
++.|||+|..... ..-+.||.+.++.+.|++-|. +|+..-.-+.+.+-|++++...+.+.... |...-+
T Consensus 226 ~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~i 305 (344)
T KOG4532|consen 226 TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHI 305 (344)
T ss_pred cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccc
Confidence 9999999865432 222345689999999998663 45555556789999999988776653221 212225
Q ss_pred EeeeccccccccccC
Q 014154 350 FDSAFADKEVANAAA 364 (430)
Q Consensus 350 ~~~~~s~~g~~~~~~ 364 (430)
+.-.|+.++..+...
T Consensus 306 fgt~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 306 FGTNFNNENESNDVK 320 (344)
T ss_pred ccccccCCCcccccc
Confidence 566666665553333
No 271
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=9.4e-09 Score=95.84 Aligned_cols=329 Identities=12% Similarity=0.019 Sum_probs=203.1
Q ss_pred CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCC-ceeEEeecCCeEEEecCCCCcccceee
Q 014154 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQND-PLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
.+++++++-.|.|.+||...+ .++..+..|..++.-+.+-+. .++. .+|++-.....|.+|+..+|+......
T Consensus 79 ~lliAsaD~~GrIil~d~~~~-----s~~~~l~~~~~~~qdl~W~~~-rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLA-----SVINWLSHSNDSVQDLCWVPA-RDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred ceeEEeccccCcEEEEEehhh-----hhhhhhcCCCcchhheeeeec-cCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence 477899999999999999986 666677778788654444442 2233 567777777899999999998776654
Q ss_pred ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCC--C-------
Q 014154 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS--G------- 163 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~--~------- 163 (430)
. ......++.+-+.+. ..+..-+..|.+.+.+..-.. ..++..+.+.+... .
T Consensus 153 y--------s~~iLs~f~~DPfd~-------rh~~~l~s~g~vl~~~~l~~s----ep~~pgk~~qI~sd~Sdl~~lere 213 (1062)
T KOG1912|consen 153 Y--------SHEILSCFRVDPFDS-------RHFCVLGSKGFVLSCKDLGLS----EPDVPGKEFQITSDHSDLAHLERE 213 (1062)
T ss_pred c--------CCcceeeeeeCCCCc-------ceEEEEccCceEEEEeccCCC----CCCCCceeEEEecCccchhhhhhh
Confidence 3 112233333333332 233333444444444322111 12223333332211 0
Q ss_pred ------------------ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154 164 ------------------TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 164 ------------------~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
....++|+|.-+.++.......+.++|++-..++....... ..+.-+.+.|.|
T Consensus 214 ~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier---------~~akfv~vlP~~ 284 (1062)
T KOG1912|consen 214 TATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIER---------GGAKFVDVLPDP 284 (1062)
T ss_pred hhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEecc---------CCcceeEeccCC
Confidence 01235678876666666777789999997655555544333 223445555555
Q ss_pred CCCEEEEEeCCCcEEEEECCC-----------------------------------------------------------
Q 014154 226 DHRKFVAGTNDHQVRLYDTSA----------------------------------------------------------- 246 (430)
Q Consensus 226 ~~~~l~s~~~dg~i~iwd~~~----------------------------------------------------------- 246 (430)
....|++...||.+.+|--+.
T Consensus 285 ~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~ 364 (1062)
T KOG1912|consen 285 RRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLS 364 (1062)
T ss_pred CcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhh
Confidence 556677777777777664332
Q ss_pred -CCcc--------------------eE----------EEeecCCCeEEEEecC-----------CC-------CEEEEEe
Q 014154 247 -QRRP--------------------VM----------SFDFRETPIKAVAEEP-----------DS-------FNIYIGN 277 (430)
Q Consensus 247 -~~~~--------------------~~----------~~~~~~~~i~~~~~sp-----------~~-------~~l~~~~ 277 (430)
++.. .. ...+|....++....| .+ .+++.|.
T Consensus 365 ~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT 444 (1062)
T KOG1912|consen 365 NGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGT 444 (1062)
T ss_pred cCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeec
Confidence 1000 00 0011323333333322 11 4678999
Q ss_pred CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEE---------eCCCcEEEEECCCCceeeEEEeeccccce
Q 014154 278 GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC---------GLDSYLRFWDIKTRQLLSAVFLKQHLNEV 348 (430)
Q Consensus 278 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~---------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 348 (430)
..|+|.++|+.++.....+..| ...|.++.|-.+..++-.+ +.-+.+.|-|+++|....--.+++.....
T Consensus 445 ~sGTV~vvdvst~~v~~~fsvh-t~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~desp 523 (1062)
T KOG1912|consen 445 NSGTVDVVDVSTNAVAASFSVH-TSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESP 523 (1062)
T ss_pred CCceEEEEEecchhhhhhhccc-ccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCc
Confidence 9999999999999998899998 9999999997766544322 22245778899998766532244555667
Q ss_pred EEeeeccccccc-cccCCCCceEecCCCCC
Q 014154 349 VFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 349 v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~ 377 (430)
|..+..|..|+| +..-.+.-+.+|+....
T Consensus 524 I~~irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 524 IRAIRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred ceeeeecccCceEEEEecccchHHHhhccc
Confidence 899999999999 77889999999998543
No 272
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.18 E-value=8.2e-08 Score=89.22 Aligned_cols=312 Identities=13% Similarity=0.100 Sum_probs=178.9
Q ss_pred CcceeeecCCCceEEEEccCCCCCcceeeeecCCCC--CCc-----ceeeeeecCCCCCceeEEeecCCeEEEecCCCCc
Q 014154 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH--SSN-----CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD 86 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~ 86 (430)
..++++++.+|.+.-+|..++ +.+=...... ... ..+.-.. .-++..++.++.+|.+..+|..+|+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG-----~~~W~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~v~v~~~~g~l~ald~~tG~ 141 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTG-----KEIWSVDLSEKDGWFSKNKSALLSGGV--TVAGGKVYIGSEKGQVYALNAEDGE 141 (394)
T ss_pred CCEEEEECCCCeEEEEECCCC-----cEeeEEcCCCccccccccccccccccc--EEECCEEEEEcCCCEEEEEECCCCC
Confidence 368888899999999999887 4432221111 000 0000000 1123457888899999999999999
Q ss_pred ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceE
Q 014154 87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA 166 (430)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~ 166 (430)
.+......... ...++ +. . +.++.+..++.+..++..... .+|......+..
T Consensus 142 ~~W~~~~~~~~----~ssP~----v~---~-------~~v~v~~~~g~l~ald~~tG~----------~~W~~~~~~~~~ 193 (394)
T PRK11138 142 VAWQTKVAGEA----LSRPV----VS---D-------GLVLVHTSNGMLQALNESDGA----------VKWTVNLDVPSL 193 (394)
T ss_pred CcccccCCCce----ecCCE----EE---C-------CEEEEECCCCEEEEEEccCCC----------EeeeecCCCCcc
Confidence 88776531100 00111 11 1 466666666666555543322 245543321111
Q ss_pred EE--EEcC--CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCC-CCCcCCcce-eEEEEeecCCCCEEEEEeCCCcEE
Q 014154 167 FS--KVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS-LGIFTPTWF-TSAAFLSIDDHRKFVAGTNDHQVR 240 (430)
Q Consensus 167 ~~--~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~v-~~~~~~~~~~~~~l~s~~~dg~i~ 240 (430)
.+ ..+| .+..++.++.++.+..+|..+++.+++........ ........+ ..... .+..++.++.+|.+.
T Consensus 194 ~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v----~~~~vy~~~~~g~l~ 269 (394)
T PRK11138 194 TLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV----VGGVVYALAYNGNLV 269 (394)
T ss_pred cccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE----ECCEEEEEEcCCeEE
Confidence 00 0112 23467778889999999999999887754321100 000000000 11111 245677778899999
Q ss_pred EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe
Q 014154 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~ 320 (430)
.+|..+++. +-.... .....+.. .+..|+.++.+|.+..+|..+++.+............+... .+.+|+.++
T Consensus 270 ald~~tG~~-~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~ 342 (394)
T PRK11138 270 ALDLRSGQI-VWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGD 342 (394)
T ss_pred EEECCCCCE-EEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEe
Confidence 999998764 322221 11122222 45688888899999999999998876543210111222222 245788889
Q ss_pred CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCC
Q 014154 321 LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNG 374 (430)
Q Consensus 321 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~ 374 (430)
.||.|++.|..+|+.+....+.+. .......+ .+++++.++.||.|..++.
T Consensus 343 ~~G~l~~ld~~tG~~~~~~~~~~~--~~~s~P~~-~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 343 SEGYLHWINREDGRFVAQQKVDSS--GFLSEPVV-ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCEEEEEECCCCCEEEEEEcCCC--cceeCCEE-ECCEEEEEeCCceEEEEeC
Confidence 999999999999999887544211 12222233 3667788899999988764
No 273
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=1.1e-06 Score=75.54 Aligned_cols=282 Identities=13% Similarity=0.100 Sum_probs=163.4
Q ss_pred CCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeec---CCeEEEecCCC--CcccceeeccCCC
Q 014154 23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK---NGLTDILNPLN--GDLRVAISNAGDS 97 (430)
Q Consensus 23 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~---dg~i~iwd~~~--~~~~~~~~~~~~~ 97 (430)
+.-|.+|++.+.. +....+... ......+-+++ +|++++|.++-. +|.|..|.+.. |++.. +... .
T Consensus 15 s~gI~v~~ld~~~-g~l~~~~~v-~~~~nptyl~~----~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~-ln~~-~- 85 (346)
T COG2706 15 SQGIYVFNLDTKT-GELSLLQLV-AELGNPTYLAV----NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF-LNRQ-T- 85 (346)
T ss_pred CCceEEEEEeCcc-cccchhhhc-cccCCCceEEE----CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEE-eecc-c-
Confidence 5679999998642 222222222 23444445555 566778888654 47787777754 44221 1110 0
Q ss_pred CCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeec--------CCCceEEEE
Q 014154 98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC--------ASGTIAFSK 169 (430)
Q Consensus 98 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~--------~~~~i~~~~ 169 (430)
.+ ..+...+.+-.... -.+.+....|.+.|+-+..... -...+.+.... ....+....
T Consensus 86 --~~-g~~p~yvsvd~~g~-------~vf~AnY~~g~v~v~p~~~dG~----l~~~v~~~~h~g~~p~~rQ~~~h~H~a~ 151 (346)
T COG2706 86 --LP-GSPPCYVSVDEDGR-------FVFVANYHSGSVSVYPLQADGS----LQPVVQVVKHTGSGPHERQESPHVHSAN 151 (346)
T ss_pred --cC-CCCCeEEEECCCCC-------EEEEEEccCceEEEEEcccCCc----cccceeeeecCCCCCCccccCCccceee
Confidence 01 11223333333221 1333444567888887754321 11111111100 012378899
Q ss_pred EcCCCCEEEEEe--CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-CCCcEEEEECCC
Q 014154 170 VDISEKFSLFGG--KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSA 246 (430)
Q Consensus 170 ~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~ 246 (430)
+.|++++|++.. .| .|.+|++..+.........- ......+.+.| +|++++..+.+ -+++|.+|....
T Consensus 152 ~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v------~~G~GPRHi~F--Hpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 152 FTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEV------KPGAGPRHIVF--HPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred eCCCCCEEEEeecCCc-eEEEEEcccCcccccccccc------CCCCCcceEEE--cCCCcEEEEEeccCCEEEEEEEcC
Confidence 999999999875 35 79999998765533222111 11245688999 89999776655 588999999887
Q ss_pred CCcceEEEeec---------CCCeEEEEecCCCCEEEEEeCC-CcEEEEEcc--CCeE--EeeeeCCCCCCeEEEEecCC
Q 014154 247 QRRPVMSFDFR---------ETPIKAVAEEPDSFNIYIGNGS-GDLASVDIR--TGKL--LGCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 247 ~~~~~~~~~~~---------~~~i~~~~~sp~~~~l~~~~~d-~~i~iwd~~--~~~~--~~~~~~~~~~~v~~i~~~~~ 312 (430)
....+..++.+ ......|.++|||++|+++... ..|.+|.+. .+++ +.....+ ....+.+.|+|.
T Consensus 223 ~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te-g~~PR~F~i~~~ 301 (346)
T COG2706 223 AVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE-GQFPRDFNINPS 301 (346)
T ss_pred CCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-CcCCccceeCCC
Confidence 32223333322 2356788999999999988642 467777665 3433 2222222 344789999999
Q ss_pred CCeEEEEeCCC-cEEEEECC--CCceee
Q 014154 313 LPIIASCGLDS-YLRFWDIK--TRQLLS 337 (430)
Q Consensus 313 ~~~l~s~~~dg-~i~iwd~~--~~~~~~ 337 (430)
+++|+++..++ .|.+|... +|++-.
T Consensus 302 g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 302 GRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred CCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 99999998654 58888664 555443
No 274
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=2.3e-08 Score=89.85 Aligned_cols=272 Identities=10% Similarity=0.053 Sum_probs=168.9
Q ss_pred CCCCceeEEeec-----------CCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEc
Q 014154 62 SQNDPLLAVARK-----------NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (430)
Q Consensus 62 ~p~g~~l~~g~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 130 (430)
+|..+||++=+. ...++|||+.+|.....|..+.. ...+-.+.-|..+. .+++.-
T Consensus 258 SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~------~~~~WP~frWS~Dd--------Ky~Arm 323 (698)
T KOG2314|consen 258 SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKS------PYLKWPIFRWSHDD--------KYFARM 323 (698)
T ss_pred CCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCC------CccccceEEeccCC--------ceeEEe
Confidence 778889998441 25699999999999888876311 11222344454443 555555
Q ss_pred cCCeeEEEEeeecCccccCCCcceEEeeec--CCCceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEeeCCC
Q 014154 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 131 ~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~ 203 (430)
....+.|+.-. ...+++.. .-..|....|+|.+++||.-+.. ..+.+..+.+++.+++...+
T Consensus 324 ~~~sisIyEtp-----------sf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlf 392 (698)
T KOG2314|consen 324 TGNSISIYETP-----------SFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLF 392 (698)
T ss_pred ccceEEEEecC-----------ceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccce
Confidence 55667777532 12222211 12457788999998888864432 24666667666666654443
Q ss_pred CCCCCCCcCCcceeEEEEeecCCCCEEEEE----------eCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEE
Q 014154 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAG----------TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI 273 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l 273 (430)
. |..+..+-..+|.+|+.- +.-..+.|+.++....|+..+... ..|...+|-|.|..+
T Consensus 393 n-----------VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velk-e~vi~FaWEP~gdkF 460 (698)
T KOG2314|consen 393 N-----------VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELK-ESVIAFAWEPHGDKF 460 (698)
T ss_pred e-----------eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecc-hheeeeeeccCCCeE
Confidence 2 333333226667776642 122246677777656666666643 688899999999887
Q ss_pred EEEeCC---CcEEEEEccC-C---eEEeeeeCCCCCCeEEEEecCCCCeEEEE---eCCCcEEEEECCCCceeeEEEeec
Q 014154 274 YIGNGS---GDLASVDIRT-G---KLLGCFIGKCSGSIRSIARHPTLPIIASC---GLDSYLRFWDIKTRQLLSAVFLKQ 343 (430)
Q Consensus 274 ~~~~~d---~~i~iwd~~~-~---~~~~~~~~~~~~~v~~i~~~~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~ 343 (430)
++-+.. .++.+|-+.+ . +++..+.. ...+.+.|+|.|++++.+ |..|.+.++|+....+..+- ...
T Consensus 461 ~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~-~~e 536 (698)
T KOG2314|consen 461 AVISGNTVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTA-SPE 536 (698)
T ss_pred EEEEccccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhcc-Ccc
Confidence 766543 5688888773 2 23444443 356889999999998776 46789999998743333221 223
Q ss_pred cccceEEeeeccccccc-cccCC------CCceEecCCCC
Q 014154 344 HLNEVVFDSAFADKEVA-NAAAD------APMLEIQNGND 376 (430)
Q Consensus 344 ~~~~~v~~~~~s~~g~~-~~~~~------d~~i~~~~~~~ 376 (430)
|. ..+.+.|.|.|++ ++++. |.--++|+...
T Consensus 537 h~--~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 537 HF--AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred cc--ccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 42 2478999999999 44443 44456666543
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.16 E-value=1.1e-07 Score=97.92 Aligned_cols=168 Identities=10% Similarity=-0.010 Sum_probs=112.2
Q ss_pred eEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCC------CCCCCCcCCcceeEEEEeecCCCC-EEEEEeCC
Q 014154 165 IAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP------KNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTND 236 (430)
Q Consensus 165 i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~d 236 (430)
...++++| ++.++++.+.++.|++||..++.... +.... ..............+++ +|++. ++++-+.+
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIav--spdG~~LYVADs~n 761 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISL--SPDLKELYIADSES 761 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEE--eCCCCEEEEEECCC
Confidence 35789999 55566666778899999998765432 11110 00000001134667888 78887 55555667
Q ss_pred CcEEEEECCCCCcceEE------------Eeec--------CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeee
Q 014154 237 HQVRLYDTSAQRRPVMS------------FDFR--------ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF 296 (430)
Q Consensus 237 g~i~iwd~~~~~~~~~~------------~~~~--------~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 296 (430)
+.|++||+.++...+.. +..+ -....+++++++|+.+++-..++.|++||..++......
T Consensus 762 ~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 762 SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe
Confidence 89999999875421110 0000 012358899999998888888999999999887664322
Q ss_pred eCC------------CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCce
Q 014154 297 IGK------------CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 297 ~~~------------~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 335 (430)
... .-.....++++++|+++++-+.++.|++||+.+++.
T Consensus 842 G~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 842 GTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 100 012567899999999888888999999999998865
No 276
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.15 E-value=7.3e-08 Score=85.87 Aligned_cols=258 Identities=15% Similarity=0.126 Sum_probs=150.4
Q ss_pred CceEEEEccCCCCCcceeeeecCCCCCC--cc-eeeeeecCCCCCceeEEeecCCeEEEecCCCCc-ccceeeccCC---
Q 014154 24 GLIKVIEARGEHGGVPKVVERWGDPHSS--NC-VLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-LRVAISNAGD--- 96 (430)
Q Consensus 24 g~i~vw~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~--- 96 (430)
+.+.+||..++ .++..+.....+ .. ++.++.++. |+|-- ....+.|+++ ++. ....+....+
T Consensus 108 n~~~vwd~~sg-----~iv~sf~~~~q~~~~Wp~~k~s~~D~----y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi 176 (561)
T COG5354 108 NNVFVWDIASG-----MIVFSFNGISQPYLGWPVLKFSIDDK----YVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGI 176 (561)
T ss_pred CceeEEeccCc-----eeEeeccccCCcccccceeeeeecch----hhhhh-ccCeEEEEec-CCccccCchhhccccce
Confidence 46999999998 777777765554 33 566666444 44433 3356999987 332 1222222111
Q ss_pred --CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154 97 --SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 97 --~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
-.++|..+.-. +++|.+.. ....+.+++|++...... .+..++.+ .=..+.|++.|
T Consensus 177 ~dFsisP~~n~~~-la~~tPEk------------~~kpa~~~i~sIp~~s~l-----~tk~lfk~----~~~qLkW~~~g 234 (561)
T COG5354 177 LDFSISPEGNHDE-LAYWTPEK------------LNKPAMVRILSIPKNSVL-----VTKNLFKV----SGVQLKWQVLG 234 (561)
T ss_pred eeEEecCCCCCce-EEEEcccc------------CCCCcEEEEEEccCCCee-----eeeeeEee----cccEEEEecCC
Confidence 11112211111 33333322 223445666666533210 01112221 12346677777
Q ss_pred CEEEEEe-----------CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEE--eCCCcEEE
Q 014154 175 KFSLFGG-----------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG--TNDHQVRL 241 (430)
Q Consensus 175 ~~l~~~~-----------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~dg~i~i 241 (430)
++|+.-. .+.+++|+++......... . ..++|...+| .|.++.+++. -.+..+.+
T Consensus 235 ~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~---------~~~pVhdf~W--~p~S~~F~vi~g~~pa~~s~ 302 (561)
T COG5354 235 KYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-D---------LKDPVHDFTW--EPLSSRFAVISGYMPASVSV 302 (561)
T ss_pred ceEEEEEEEeeecccceeccceEEEEeecccccceec-c---------ccccceeeee--cccCCceeEEecccccceee
Confidence 7765421 1345777777632221111 1 1277999999 7777766554 47888999
Q ss_pred EECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC---CcEEEEEccCCeE-EeeeeCCCCCCeEEEEecCCCCeEE
Q 014154 242 YDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~ 317 (430)
+|++.. ..+...+..=..+.|+|.+++++.++-| |.|.+||...... +..+.+. ...-+.|+|+++++.
T Consensus 303 ~~lr~N----l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~---n~s~~~wspd~qF~~ 375 (561)
T COG5354 303 FDLRGN----LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL---NTSYCDWSPDGQFYD 375 (561)
T ss_pred cccccc----eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC---CceEeeccCCceEEE
Confidence 999963 2333444566778899999999998766 7799999865544 4466654 345568999999887
Q ss_pred EEe------CCCcEEEEECCCC
Q 014154 318 SCG------LDSYLRFWDIKTR 333 (430)
Q Consensus 318 s~~------~dg~i~iwd~~~~ 333 (430)
+.. .|..|.|||+...
T Consensus 376 ~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 376 TDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred ecCCCcccccCcceEEEEecCc
Confidence 763 4788999998643
No 277
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=1.1e-08 Score=94.70 Aligned_cols=288 Identities=12% Similarity=0.118 Sum_probs=179.6
Q ss_pred eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc---C----CCCCCCCCCceEEEEEeecCcccccccCceE
Q 014154 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA---G----DSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~---~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 126 (430)
.-...| .....|+|+|+.||.++|..+.+...-....+. . .-...+|...+. +.-|+... ..+
T Consensus 17 L~c~~W--Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~-vvTWNe~~-------QKL 86 (1189)
T KOG2041|consen 17 LHCAEW--NKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVM-VVTWNENN-------QKL 86 (1189)
T ss_pred EEEEEE--cccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEE-EEEecccc-------ccc
Confidence 444455 555679999999999999988755433222221 0 011224444554 44455444 466
Q ss_pred EEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCC
Q 014154 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (430)
Q Consensus 127 ~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 206 (430)
-+...+|-+.||-+-...- ....+ +-.....|.+++|+.+|..++..-.||.|.+=.++. ..++--....
T Consensus 87 TtSDt~GlIiVWmlykgsW----~EEMi---NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG-NRIwgKeLkg-- 156 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGSW----CEEMI---NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG-NRIWGKELKG-- 156 (1189)
T ss_pred cccCCCceEEEEeeecccH----HHHHh---hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc-ceecchhcch--
Confidence 6667777777776543221 00011 112346788999999999999999999998877753 3333211110
Q ss_pred CCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc------ceEEEee----cCCCeEEEEe--------cC
Q 014154 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR------PVMSFDF----RETPIKAVAE--------EP 268 (430)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~----~~~~i~~~~~--------sp 268 (430)
.....+.| ++|...++.+-.+|.+++||.+.... ......+ ....|-.+.| -|
T Consensus 157 -------~~l~hv~w--s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~p 227 (1189)
T KOG2041|consen 157 -------QLLAHVLW--SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPP 227 (1189)
T ss_pred -------heccceee--cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCC
Confidence 22456778 88988888888999999999875221 0111111 1123555555 35
Q ss_pred CCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCC---------cEEEEECCCCceeeEE
Q 014154 269 DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS---------YLRFWDIKTRQLLSAV 339 (430)
Q Consensus 269 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg---------~i~iwd~~~~~~~~~~ 339 (430)
+...|+++...|.+.|..-.+......+.. .-.+..+.|+++|..|+.+|.|. .|.+|. .-|..+.++
T Consensus 228 drP~lavcy~nGr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtl 304 (1189)
T KOG2041|consen 228 DRPRLAVCYANGRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTL 304 (1189)
T ss_pred CCCEEEEEEcCceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEE
Confidence 778999999999988865443332223332 35788999999999999998653 455554 346666664
Q ss_pred EeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154 340 FLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 340 ~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~ 376 (430)
. -. +.-|++++|-..|..++-.-|+.|.+-+..+
T Consensus 305 k--vp-g~~It~lsWEg~gLriA~AvdsfiyfanIRP 338 (1189)
T KOG2041|consen 305 K--VP-GSCITGLSWEGTGLRIAIAVDSFIYFANIRP 338 (1189)
T ss_pred e--cC-CceeeeeEEcCCceEEEEEecceEEEEeecc
Confidence 3 33 4457999998888776666777776655444
No 278
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.13 E-value=7.7e-10 Score=95.36 Aligned_cols=160 Identities=15% Similarity=0.168 Sum_probs=111.1
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCee----eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC---c
Q 014154 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEK----IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---Q 238 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~ 238 (430)
..+..++++++||.+..+....++++..... ....... ...+++.|. .+...+..+..-| .
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~----------~~~~ai~~~--~~~~sv~v~dkagD~~~ 133 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP----------KRPTAISFI--REDTSVLVADKAGDVYS 133 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc----------cCcceeeee--eccceEEEEeecCCcee
Confidence 3445677888999888888877777754332 1111111 223344442 2333333333334 4
Q ss_pred EEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEE
Q 014154 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS 318 (430)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s 318 (430)
+.+|....+ ....+-+|-+.++.++|+||+++|+++..|..|++-.......+..|.-.|..-|..++.-++. .|++
T Consensus 134 ~di~s~~~~--~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS 210 (390)
T KOG3914|consen 134 FDILSADSG--RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLS 210 (390)
T ss_pred eeeeccccc--CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeee
Confidence 455554432 2456678999999999999999999999999999987776666666654338999999987654 5899
Q ss_pred EeCCCcEEEEECCCCceeeEEE
Q 014154 319 CGLDSYLRFWDIKTRQLLSAVF 340 (430)
Q Consensus 319 ~~~dg~i~iwd~~~~~~~~~~~ 340 (430)
+|.|++|++||+.+|+.+.++.
T Consensus 211 ~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 211 GSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred cCCCCcEEEEecccCCcccccc
Confidence 9999999999999999887653
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.13 E-value=2.9e-07 Score=94.75 Aligned_cols=208 Identities=12% Similarity=0.057 Sum_probs=135.9
Q ss_pred ceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEeeCCC--CCCCCC------CcCCcceeEEEEeecC-CCCEEEEE
Q 014154 164 TIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPP--PKNSLG------IFTPTWFTSAAFLSID-DHRKFVAG 233 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~--~~~~~~------~~~~~~v~~~~~~~~~-~~~~l~s~ 233 (430)
....++++++++.|+++.. ++.|+++|+.++.. ..+... ...... .........++| +| ++.++++.
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~--dp~~g~LyVad 701 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCF--EPVNEKVYIAM 701 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEE--ecCCCeEEEEE
Confidence 3578899998887776654 56799999877543 222211 000000 000123457888 67 56677777
Q ss_pred eCCCcEEEEECCCCCcceEEEeec---------------CCCeEEEEecCCCCEEE-EEeCCCcEEEEEccCCeEEeeee
Q 014154 234 TNDHQVRLYDTSAQRRPVMSFDFR---------------ETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRTGKLLGCFI 297 (430)
Q Consensus 234 ~~dg~i~iwd~~~~~~~~~~~~~~---------------~~~i~~~~~sp~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~ 297 (430)
+.++.|++||..++. +..+.+. -.....|+++|++..|+ +-+.++.|++||+.++.......
T Consensus 702 ~~~~~I~v~d~~~g~--v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g 779 (1057)
T PLN02919 702 AGQHQIWEYNISDGV--TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG 779 (1057)
T ss_pred CCCCeEEEEECCCCe--EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence 788999999998753 2222211 12345799999998555 44567899999998765321110
Q ss_pred C-------------C-------CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeec------------cc
Q 014154 298 G-------------K-------CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQ------------HL 345 (430)
Q Consensus 298 ~-------------~-------~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------~~ 345 (430)
+ . .-.....++++++|.++++-..++.|++||..++...... -.+ ..
T Consensus 780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia-G~G~~G~~dG~~~~a~l 858 (1057)
T PLN02919 780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA-GTGKAGFKDGKALKAQL 858 (1057)
T ss_pred cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe-ccCCcCCCCCccccccc
Confidence 0 0 0113468899999998888889999999999887665432 111 11
Q ss_pred cceEEeeeccccccc-cccCCCCceEecCCCCCc
Q 014154 346 NEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 346 ~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~ 378 (430)
. ....++++++|++ ++-+.++.|++|+.....
T Consensus 859 ~-~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 859 S-EPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred C-CceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 1 2478899999998 888889999999987643
No 280
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.11 E-value=1.4e-07 Score=78.54 Aligned_cols=209 Identities=16% Similarity=0.144 Sum_probs=133.3
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeec--CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeC
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 201 (430)
|.+++...+..+.|.+....-. + .+....+. ....-..++|+|++.+||.+...|+|++||+.. ..++.+.
T Consensus 9 Gk~lAi~qd~~iEiRsa~Ddf~---s---i~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~ 81 (282)
T PF15492_consen 9 GKLLAILQDQCIEIRSAKDDFS---S---IIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIP 81 (282)
T ss_pred CcEEEEEeccEEEEEeccCCch---h---eeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcC
Confidence 6888888888888877542211 0 11222222 224567899999999999999999999999964 4555554
Q ss_pred CCCCCCCCCcCCcceeEEEEeecCC----CCEEEEEeCCCcEEEEECCC----CCcceEEEee---cCCCeEEEEecCCC
Q 014154 202 PPPKNSLGIFTPTWFTSAAFLSIDD----HRKFVAGTNDHQVRLYDTSA----QRRPVMSFDF---RETPIKAVAEEPDS 270 (430)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~---~~~~i~~~~~sp~~ 270 (430)
...... ......|..+.|..... ...|++-...|.++-|-+.. +-.....+.. +...|.++.|+|..
T Consensus 82 p~~~~~--~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 82 PAMSFP--GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cccccC--CccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 422111 11235577777752110 22455667888887766532 1112333333 35689999999998
Q ss_pred CEEEEEeCC----C-------cEEEEEccCCeEEe----------------------------eeeCCCCCCeEEEEecC
Q 014154 271 FNIYIGNGS----G-------DLASVDIRTGKLLG----------------------------CFIGKCSGSIRSIARHP 311 (430)
Q Consensus 271 ~~l~~~~~d----~-------~i~iwd~~~~~~~~----------------------------~~~~~~~~~v~~i~~~~ 311 (430)
++|++|+.. + -+..|-+-++.+-. ...+.....|..|..||
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP 239 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP 239 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC
Confidence 888887632 1 25556443221100 00111256799999999
Q ss_pred CCCeEEEEeCCCcEEEEECCCCceeeEEEe
Q 014154 312 TLPIIASCGLDSYLRFWDIKTRQLLSAVFL 341 (430)
Q Consensus 312 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 341 (430)
||..|++...+|.|.+|++.+-++.....+
T Consensus 240 dg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 240 DGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 999999999999999999998887776543
No 281
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.10 E-value=2.7e-09 Score=88.99 Aligned_cols=285 Identities=13% Similarity=0.125 Sum_probs=165.7
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCC----------cceeeeeecCCCCCceeEEeecCCeEEEecCCC
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS----------NCVLAASIDDSQNDPLLAVARKNGLTDILNPLN 84 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~ 84 (430)
..|+||+..|.|.++.......-..++...|+.|... ..+.++.|-.......++..+.|.+|++|.+..
T Consensus 39 ~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiye 118 (460)
T COG5170 39 LYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYE 118 (460)
T ss_pred ceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeec
Confidence 6789999999999998876422223455567766542 123344442233334566677899999999864
Q ss_pred Ccccceeec-cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCC
Q 014154 85 GDLRVAISN-AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG 163 (430)
Q Consensus 85 ~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~ 163 (430)
......-+. ....-..|..+++.+.. ..++--...+. .+.... +-+++.-.|.-
T Consensus 119 knlk~va~nnls~~~~~~~~g~~~s~~-------------~l~lprls~hd-~iiaa~-----------p~rvyaNaH~y 173 (460)
T COG5170 119 KNLKVVAENNLSDSFHSPMGGPLTSTK-------------ELLLPRLSEHD-EIIAAK-----------PCRVYANAHPY 173 (460)
T ss_pred ccchhhhccccccccccccCCCcCCHH-------------Hhhcccccccc-eEEEec-----------cceecccccee
Confidence 432111111 11101112222332111 01111111111 111111 44556556777
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe---eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEE
Q 014154 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT---AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 240 (430)
.|.++.++.+...++++ .|-.|.+|+++-....+. ++.+.-.. ...-|++..|+ +...+.+...+..|.|+
T Consensus 174 hiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmee----LteVItSaeFh-p~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 174 HINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEE----LTEVITSAEFH-PEMCNVFMYSSSKGEIK 247 (460)
T ss_pred EeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHH----HHHHHhhcccC-HhHcceEEEecCCCcEE
Confidence 89999999888887764 456899999875433322 23221100 01347788884 22345677778899999
Q ss_pred EEECCCCCc-----ceEE----------EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC-eEEeeeeCC-----
Q 014154 241 LYDTSAQRR-----PVMS----------FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGK----- 299 (430)
Q Consensus 241 iwd~~~~~~-----~~~~----------~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~----- 299 (430)
+-|++.... .+.. +..-...|..+.|+++|+++++-+. .+|+|||.+.. .++.++.-|
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~ 326 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMD 326 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHH
Confidence 999984221 0111 1112356888999999999987643 57999999864 356666544
Q ss_pred ------CCCCe---EEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154 300 ------CSGSI---RSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 300 ------~~~~v---~~i~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
....| ..+.||.+...+++|+..+..-+|-+.
T Consensus 327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred HHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 11223 357788888899999988888887644
No 282
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.09 E-value=1.5e-09 Score=100.41 Aligned_cols=281 Identities=10% Similarity=0.056 Sum_probs=176.5
Q ss_pred CCCCceeEEeecCCeEEEecCC-CCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEe
Q 014154 62 SQNDPLLAVARKNGLTDILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI 140 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~ 140 (430)
.|.|+-+|.++.-|.+ +.|+. .+.+..-+....+ -.+....|...... ..-++....+...+|.+
T Consensus 33 ~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tp-------w~vad~qws~h~a~------~~wiVsts~qkaiiwnl 98 (1081)
T KOG0309|consen 33 NPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITP-------WQVADVQWSPHPAK------PYWIVSTSNQKAIIWNL 98 (1081)
T ss_pred ccccchhhhhhhcCeE-EEeccCCCCCceeeeccCc-------chhcceecccCCCC------ceeEEecCcchhhhhhh
Confidence 6677778888887754 44443 3444333333222 12222333332221 35566666777788887
Q ss_pred eecCccccCCCcceEEeeecCCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCee-eEeeCCCCCCCCCCcCCcceeE
Q 014154 141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTS 218 (430)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~v~~ 218 (430)
+.+ .+..|..+...|...|+.+.|+|+ ...+++++.|..+..||+++... +.....-. .....
T Consensus 99 A~s------s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~---------s~asq 163 (1081)
T KOG0309|consen 99 AKS------SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR---------SAASQ 163 (1081)
T ss_pred hcC------CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc---------ccCce
Confidence 654 455777777789999999999994 56889999999999999987543 33322211 33456
Q ss_pred EEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecC-CCCEEEEEeCCCcEEEEEccCCeEEeeee
Q 014154 219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (430)
Q Consensus 219 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 297 (430)
++|. ..++..+++ +....|++||++.+..++..+++|...|..+.|.. ....+++.+.|++|+.||...........
T Consensus 164 Vkwn-yk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~ 241 (1081)
T KOG0309|consen 164 VKWN-YKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT 241 (1081)
T ss_pred eeec-ccCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee
Confidence 6774 345555554 67778999999999999999999999999998864 23578899999999999987543322111
Q ss_pred CCCCCCeEEEEecCCCCeEEEE--eCCCcEEE---------EECCC-CceeeEEEeeccccceEEeeecccc--------
Q 014154 298 GKCSGSIRSIARHPTLPIIASC--GLDSYLRF---------WDIKT-RQLLSAVFLKQHLNEVVFDSAFADK-------- 357 (430)
Q Consensus 298 ~~~~~~v~~i~~~~~~~~l~s~--~~dg~i~i---------wd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~-------- 357 (430)
.....+|..-.+-|-|.-..+- -.+..+.+ |+..+ .+++++ +.||. ..|...-|-..
T Consensus 242 vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~--F~GH~-D~V~eFlWR~r~e~~~d~d 318 (1081)
T KOG0309|consen 242 VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHT--FVGHD-DVVLEFLWRKRKECDGDYD 318 (1081)
T ss_pred ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceee--ecCcc-hHHHHHhhhhcccccCCCC
Confidence 1114566666666644321111 11223333 33332 345666 67884 33444444322
Q ss_pred ---ccccccCCCCceEecCCCC
Q 014154 358 ---EVANAAADAPMLEIQNGND 376 (430)
Q Consensus 358 ---g~~~~~~~d~~i~~~~~~~ 376 (430)
-++++=+.|..+++|....
T Consensus 319 ~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 319 SRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccceeEEEeecCCceEeeeccH
Confidence 1238889999999998754
No 283
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.08 E-value=3.2e-08 Score=87.35 Aligned_cols=167 Identities=19% Similarity=0.179 Sum_probs=124.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC-cEEEEECCCCCcce
Q 014154 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-QVRLYDTSAQRRPV 251 (430)
Q Consensus 173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~ 251 (430)
+|++++..+.. ...+.+...+-.+.. .+...|.-..+ ..+++-++.|..|| .+-|||..+++ +
T Consensus 331 ~Gd~ia~VSRG-kaFi~~~~~~~~iqv-----------~~~~~VrY~r~--~~~~e~~vigt~dgD~l~iyd~~~~e--~ 394 (668)
T COG4946 331 NGDYIALVSRG-KAFIMRPWDGYSIQV-----------GKKGGVRYRRI--QVDPEGDVIGTNDGDKLGIYDKDGGE--V 394 (668)
T ss_pred CCcEEEEEecC-cEEEECCCCCeeEEc-----------CCCCceEEEEE--ccCCcceEEeccCCceEEEEecCCce--E
Confidence 46666666543 555555444333322 12245777777 55666889999999 89999999865 5
Q ss_pred EEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCC----cEEE
Q 014154 252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS----YLRF 327 (430)
Q Consensus 252 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg----~i~i 327 (430)
..+...-+.|.++..+|+|++++++.....|.++|+.++.....-+.. .+-|+.+.|||+++++|-+--+| .|++
T Consensus 395 kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~-~~lItdf~~~~nsr~iAYafP~gy~tq~Ikl 473 (668)
T COG4946 395 KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSE-YGLITDFDWHPNSRWIAYAFPEGYYTQSIKL 473 (668)
T ss_pred EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccc-cceeEEEEEcCCceeEEEecCcceeeeeEEE
Confidence 667777789999999999999999998899999999999875444444 67899999999999999887665 6999
Q ss_pred EECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154 328 WDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 328 wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 360 (430)
+|+.+++....-...+ .-.+.+|.||+++
T Consensus 474 ydm~~~Kiy~vTT~ta----~DfsPaFD~d~ry 502 (668)
T COG4946 474 YDMDGGKIYDVTTPTA----YDFSPAFDPDGRY 502 (668)
T ss_pred EecCCCeEEEecCCcc----cccCcccCCCCcE
Confidence 9999888766532222 2367899999986
No 284
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.05 E-value=8.5e-09 Score=86.08 Aligned_cols=293 Identities=14% Similarity=0.202 Sum_probs=167.7
Q ss_pred ceeeeeecCCCCCceeEEeecCCeEEEecCCCCc-----ccceeeccCCCCCC-----CCCCceEEEEEeecCccccccc
Q 014154 53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-----LRVAISNAGDSGAQ-----PEDDGIVGLHLFKRQREESSSR 122 (430)
Q Consensus 53 ~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~ 122 (430)
.+.++-+ .-.|.||++|...|.|.++.-.... ...+|+.|.. .|. .-...|..+.|+.....
T Consensus 28 ~ItaVef--d~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~-EFDYLkSleieEKin~I~w~~~t~r----- 99 (460)
T COG5170 28 KITAVEF--DETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHEL-EFDYLKSLEIEEKINAIEWFDDTGR----- 99 (460)
T ss_pred eeeEEEe--ccccceEeecCCCceEEEeecccccccchhhhhhhccccc-chhhhhhccHHHHhhheeeecCCCc-----
Confidence 3666777 4458899999999999999765332 2223333211 011 12235667788876543
Q ss_pred CceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCC
Q 014154 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (430)
Q Consensus 123 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 202 (430)
..++..+.+.++.+|.+.....-..+....-.-+....++++++.. .+++=.+.....+....
T Consensus 100 -~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~---------------~l~lprls~hd~iiaa~- 162 (460)
T COG5170 100 -NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTK---------------ELLLPRLSEHDEIIAAK- 162 (460)
T ss_pred -ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHH---------------HhhcccccccceEEEec-
Confidence 3788888889999998754321000000000001111112111100 11111111000000000
Q ss_pred CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc--eEEEeecC-----CCeEEEEecCCC-CEEE
Q 014154 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP--VMSFDFRE-----TPIKAVAEEPDS-FNIY 274 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~-----~~i~~~~~sp~~-~~l~ 274 (430)
+...+.-.|+..+.++.| ..+...+++ ..|-.|.+|++.-.... +..++.|. .-|++..|+|.. ..+.
T Consensus 163 -p~rvyaNaH~yhiNSiS~--NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fm 238 (460)
T COG5170 163 -PCRVYANAHPYHINSISF--NSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFM 238 (460)
T ss_pred -cceeccccceeEeeeeee--cCchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEE
Confidence 000111123466889999 677777776 56889999998753322 23333443 358899999964 5677
Q ss_pred EEeCCCcEEEEEccCCeE------Eee----------eeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC-Cceee
Q 014154 275 IGNGSGDLASVDIRTGKL------LGC----------FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT-RQLLS 337 (430)
Q Consensus 275 ~~~~d~~i~iwd~~~~~~------~~~----------~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~ 337 (430)
-.+..|.|++-|+|...+ +.. +.+ ....|..+.|+++|+++++-+. -+|+|||++. ..++.
T Consensus 239 YSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~e-ivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pik 316 (460)
T COG5170 239 YSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEE-IVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIK 316 (460)
T ss_pred EecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHH-HhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCce
Confidence 778899999999985322 111 111 1457889999999999987754 4799999975 34566
Q ss_pred EEEeecc----------ccce--EEeeeccccccc-cccCCCCceEecCCCC
Q 014154 338 AVFLKQH----------LNEV--VFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 338 ~~~~~~~----------~~~~--v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
++.+.-. .+++ -+.+.||.|.+. ++|+..+..-+|-...
T Consensus 317 Ti~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 317 TIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred eechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 5432111 0111 256889998888 9999999999987543
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=2.3e-07 Score=86.04 Aligned_cols=175 Identities=13% Similarity=0.076 Sum_probs=113.7
Q ss_pred CceEEEEEcCCCCE-EEEEeCC---CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEE-eCC-
Q 014154 163 GTIAFSKVDISEKF-SLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TND- 236 (430)
Q Consensus 163 ~~i~~~~~~~~~~~-l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~d- 236 (430)
+.+....|+|+++. ++..+.+ ..|+++|+.+++........ .......| +|||..|+.. +.+
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~----------g~~~~~~~--SPDG~~la~~~~~~g 255 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ----------GMLVVSDV--SKDGSKLLLTMAPKG 255 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC----------CcEEeeEE--CCCCCEEEEEEccCC
Confidence 36778999999985 6544433 56999999887664433221 33455678 8999866643 333
Q ss_pred -CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC-C--cEEEEEccCCeEEeeeeCCCCCCeEEEEecCC
Q 014154 237 -HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-G--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 237 -g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~ 312 (430)
..|.++|+.++. ...+..+........|+|||+.|+..+.. + .|+++|+.+++........ . ....|+|+
T Consensus 256 ~~~Iy~~dl~~g~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~---~~~~~SPD 329 (419)
T PRK04043 256 QPDIYLYDTNTKT--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-K---NNSSVSTY 329 (419)
T ss_pred CcEEEEEECCCCc--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-C---cCceECCC
Confidence 468888887654 34444443334456899999888766532 2 5888899887764333221 1 12489999
Q ss_pred CCeEEEEeCC---------CcEEEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154 313 LPIIASCGLD---------SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 313 ~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 360 (430)
|++|+..+.. ..|.+.|+.++.... +.. . . ......|+|||+.
T Consensus 330 G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~--~-~-~~~~p~~SPDG~~ 381 (419)
T PRK04043 330 KNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTA--N-G-VNQFPRFSSDGGS 381 (419)
T ss_pred CCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCC--C-C-CcCCeEECCCCCE
Confidence 9988776643 368888988876543 211 1 1 2236899999997
No 286
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.03 E-value=2.5e-06 Score=86.45 Aligned_cols=290 Identities=12% Similarity=0.105 Sum_probs=178.6
Q ss_pred CcceeeeeecCCCCCceeEEeecCCeEEEe----cCCCCc--ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCc
Q 014154 51 SNCVLAASIDDSQNDPLLAVARKNGLTDIL----NPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR 124 (430)
Q Consensus 51 ~~~~~~~~~~~~p~g~~l~~g~~dg~i~iw----d~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 124 (430)
...++++.+ -++..-|+.+..+|.|.+. +..+.. .+..+ +..|.++.|.+.+.
T Consensus 75 ~~~ivs~~y--l~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v-----------d~GI~a~~WSPD~E-------- 133 (928)
T PF04762_consen 75 NDKIVSFQY--LADSESLCIALASGDIILVREDPDPDEDEIEIVGSV-----------DSGILAASWSPDEE-------- 133 (928)
T ss_pred CCcEEEEEe--ccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE-----------cCcEEEEEECCCcC--------
Confidence 345777777 7777789999999999999 543332 22222 24788888777664
Q ss_pred eEEEEccCCeeEEEEeeecCc----cccCC---CcceEE-e--------------------e----------ecCCCceE
Q 014154 125 TLLTCTTKGKASMRSIEVTKV----SAESS---CSTVKS-W--------------------N----------VCASGTIA 166 (430)
Q Consensus 125 ~~~~~~~~g~~~v~~~~~~~~----~~~~~---~~~i~~-~--------------------~----------~~~~~~i~ 166 (430)
.++..+.++++.+.+-.|.+- ..... ...|.+ | + +.....-.
T Consensus 134 lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~ 213 (928)
T PF04762_consen 134 LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRV 213 (928)
T ss_pred EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCce
Confidence 777777788887776555432 00000 000000 0 0 00112345
Q ss_pred EEEEcCCCCEEEEEeC---C---CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC---CC
Q 014154 167 FSKVDISEKFSLFGGK---G---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---DH 237 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~---d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg 237 (430)
.++|-.||.++|+.+. . ..++||+-+ |.......... +--.+++| .|.|++||+... ..
T Consensus 214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~---------gLe~~l~W--rPsG~lIA~~q~~~~~~ 281 (928)
T PF04762_consen 214 RISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD---------GLEGALSW--RPSGNLIASSQRLPDRH 281 (928)
T ss_pred EEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC---------CccCCccC--CCCCCEEEEEEEcCCCc
Confidence 6889999999998775 2 468999875 54433322211 22356788 899999998764 34
Q ss_pred cEEEEECCCCCcceEEEe----ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE--EeeeeCCCCCCeEEEEecC
Q 014154 238 QVRLYDTSAQRRPVMSFD----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL--LGCFIGKCSGSIRSIARHP 311 (430)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~----~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~ 311 (430)
.|.+|.-+..+ ...|. .....|..+.|++|+..|+....|. |.+|-..+..- .+++.-.....+..+.|+|
T Consensus 282 ~VvFfErNGLr--hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdp 358 (928)
T PF04762_consen 282 DVVFFERNGLR--HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDP 358 (928)
T ss_pred EEEEEecCCcE--eeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECC
Confidence 56666654322 22222 2346899999999999999987665 99999887753 3333322134456699999
Q ss_pred CC-CeEEEEeCCCcEEEEEC----CCCc--------eeeEE--------Eee------------ccccceEEeeeccccc
Q 014154 312 TL-PIIASCGLDSYLRFWDI----KTRQ--------LLSAV--------FLK------------QHLNEVVFDSAFADKE 358 (430)
Q Consensus 312 ~~-~~l~s~~~dg~i~iwd~----~~~~--------~~~~~--------~~~------------~~~~~~v~~~~~s~~g 358 (430)
.. ..|...+.+|.+..++. ..+. .+..+ .+. -.....|.+++|++++
T Consensus 359 e~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~ 438 (928)
T PF04762_consen 359 EKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN 438 (928)
T ss_pred CCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC
Confidence 65 34666666566655543 1110 11110 000 0124457899999998
Q ss_pred cc-cccCCCCceEecCCCC
Q 014154 359 VA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 359 ~~-~~~~~d~~i~~~~~~~ 376 (430)
.. ++...||.+.+|..+.
T Consensus 439 ~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 439 SRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred CeEEEEECCCCEEEEEecC
Confidence 75 8888999999998655
No 287
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.03 E-value=4e-07 Score=84.68 Aligned_cols=261 Identities=13% Similarity=0.059 Sum_probs=152.1
Q ss_pred CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
..+++.++.+|.+..+|..++ +.+=+..... .+...-.- .+..++++..+|.|..+|..+|+.+..+..
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG-----~~~W~~~~~~-~~~ssP~v-----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDG-----EVAWQTKVAG-EALSRPVV-----SDGLVLVHTSNGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCC-----CCcccccCCC-ceecCCEE-----ECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence 467888999999999999887 4442222211 11100011 123577788899999999999998877654
Q ss_pred cCCC-CCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCC--------c
Q 014154 94 AGDS-GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG--------T 164 (430)
Q Consensus 94 ~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~--------~ 164 (430)
..+. .......++. .. +.++.+..+|.+...+..... .+|...... .
T Consensus 189 ~~~~~~~~~~~sP~v----~~----------~~v~~~~~~g~v~a~d~~~G~----------~~W~~~~~~~~~~~~~~~ 244 (394)
T PRK11138 189 DVPSLTLRGESAPAT----AF----------GGAIVGGDNGRVSAVLMEQGQ----------LIWQQRISQPTGATEIDR 244 (394)
T ss_pred CCCcccccCCCCCEE----EC----------CEEEEEcCCCEEEEEEccCCh----------hhheeccccCCCccchhc
Confidence 1110 0000011111 10 345555666655554433221 123221100 0
Q ss_pred eEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154 165 IAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 165 i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 242 (430)
...+..+| .+..++.++.+|.+..+|..+++.++...... ...+.. .+..|+.++.+|.+..+
T Consensus 245 ~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-----------~~~~~~----~~~~vy~~~~~g~l~al 309 (394)
T PRK11138 245 LVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS-----------VNDFAV----DGGRIYLVDQNDRVYAL 309 (394)
T ss_pred ccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC-----------ccCcEE----ECCEEEEEcCCCeEEEE
Confidence 01111122 35677778889999999999999988754321 111222 45677778899999999
Q ss_pred ECCCCCcceEEEee-cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEE-EEecCCCCeEEEEe
Q 014154 243 DTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS-IARHPTLPIIASCG 320 (430)
Q Consensus 243 d~~~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~-i~~~~~~~~l~s~~ 320 (430)
|..+++. +-.... ......+..+ .+.+|+.++.+|.|+++|..+|+.+...... ...+.+ ..+ .+..|+.++
T Consensus 310 d~~tG~~-~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~-~~~~~s~P~~--~~~~l~v~t 383 (394)
T PRK11138 310 DTRGGVE-LWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD-SSGFLSEPVV--ADDKLLIQA 383 (394)
T ss_pred ECCCCcE-EEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC-CCcceeCCEE--ECCEEEEEe
Confidence 9988763 222211 1111222222 2457888999999999999999998877643 223322 222 244788889
Q ss_pred CCCcEEEEEC
Q 014154 321 LDSYLRFWDI 330 (430)
Q Consensus 321 ~dg~i~iwd~ 330 (430)
.||.|+.++.
T Consensus 384 ~~G~l~~~~~ 393 (394)
T PRK11138 384 RDGTVYAITR 393 (394)
T ss_pred CCceEEEEeC
Confidence 9999988764
No 288
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=4.4e-07 Score=77.87 Aligned_cols=228 Identities=11% Similarity=0.066 Sum_probs=145.7
Q ss_pred CCeeEEEEeeecCccccCCCcceEEe-eecCCCceEEEEEcCCCCEEEEEeC---CCeEEEEECCC--CeeeEeeCCCCC
Q 014154 132 KGKASMRSIEVTKVSAESSCSTVKSW-NVCASGTIAFSKVDISEKFSLFGGK---GVEVNVWDLDK--CEKIWTAKPPPK 205 (430)
Q Consensus 132 ~g~~~v~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~~~d~~~--~~~~~~~~~~~~ 205 (430)
+..+.+|.+..... .+... .....+..+-|+++|+.+.|+++-. +|.|..|.++. |+....-....
T Consensus 15 s~gI~v~~ld~~~g-------~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~- 86 (346)
T COG2706 15 SQGIYVFNLDTKTG-------ELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL- 86 (346)
T ss_pred CCceEEEEEeCccc-------ccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc-
Confidence 45677777763321 11111 1123466788999999999998765 46788887764 44432211111
Q ss_pred CCCCCcCCcceeEEEEeecCCCCEEEEEeC-CCcEEEEECCCCCcc--eEEEeecCCC----------eEEEEecCCCCE
Q 014154 206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRP--VMSFDFRETP----------IKAVAEEPDSFN 272 (430)
Q Consensus 206 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~--~~~~~~~~~~----------i~~~~~sp~~~~ 272 (430)
.....+.+++ ++++++++++.. .|.|.++-++....+ ...+..|.+. +.+..+.|++++
T Consensus 87 ------~g~~p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~ 158 (346)
T COG2706 87 ------PGSPPCYVSV--DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY 158 (346)
T ss_pred ------CCCCCeEEEE--CCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCE
Confidence 0123367788 899999988875 578999998763321 1122334444 888999999999
Q ss_pred EEEEeC-CCcEEEEEccCCeEEe----eeeCCCCCCeEEEEecCCCCeEEEEe-CCCcEEEEECCCC-ceeeEEE----e
Q 014154 273 IYIGNG-SGDLASVDIRTGKLLG----CFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTR-QLLSAVF----L 341 (430)
Q Consensus 273 l~~~~~-d~~i~iwd~~~~~~~~----~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~~~-~~~~~~~----~ 341 (430)
|++..- -..|.+|++..|++.. .++. ....+.|.|+|++++..... -+++|-+|..... ..+..+. +
T Consensus 159 l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~--G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl 236 (346)
T COG2706 159 LVVPDLGTDRIFLYDLDDGKLTPADPAEVKP--GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL 236 (346)
T ss_pred EEEeecCCceEEEEEcccCccccccccccCC--CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC
Confidence 998763 3569999999776532 2222 56779999999999876655 6899999998863 2222211 1
Q ss_pred ecc--ccceEEeeeccccccccccCC--CCceEecCCCCC
Q 014154 342 KQH--LNEVVFDSAFADKEVANAAAD--APMLEIQNGNDT 377 (430)
Q Consensus 342 ~~~--~~~~v~~~~~s~~g~~~~~~~--d~~i~~~~~~~~ 377 (430)
+.. ......++..++||+++.++. ...|.+|..++.
T Consensus 237 P~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 237 PEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred ccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 111 123356889999999955544 457777776653
No 289
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.99 E-value=1.2e-06 Score=88.74 Aligned_cols=251 Identities=12% Similarity=0.073 Sum_probs=151.5
Q ss_pred CCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEe
Q 014154 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG 181 (430)
Q Consensus 102 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~ 181 (430)
..+.+.++.++.... .++.+..+|.+.+......+ ....+.+-- .-...|.+++||||+..|+..+
T Consensus 74 ~~~~ivs~~yl~d~~--------~l~~~~~~Gdi~~~~~~~~~-----~~~~~E~VG-~vd~GI~a~~WSPD~Ella~vT 139 (928)
T PF04762_consen 74 PNDKIVSFQYLADSE--------SLCIALASGDIILVREDPDP-----DEDEIEIVG-SVDSGILAASWSPDEELLALVT 139 (928)
T ss_pred CCCcEEEEEeccCCC--------cEEEEECCceEEEEEccCCC-----CCceeEEEE-EEcCcEEEEEECCCcCEEEEEe
Confidence 446788888877654 77888888888887443221 111222222 1246899999999999999999
Q ss_pred CCCeEEEEECCCCeee------------------------EeeCCCCCCC---------------CCCcCCcceeEEEEe
Q 014154 182 KGVEVNVWDLDKCEKI------------------------WTAKPPPKNS---------------LGIFTPTWFTSAAFL 222 (430)
Q Consensus 182 ~d~~i~~~d~~~~~~~------------------------~~~~~~~~~~---------------~~~~~~~~v~~~~~~ 222 (430)
.+++|.+.+-. ...+ ..+++..+.. ..+...+.-..++|
T Consensus 140 ~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISW- 217 (928)
T PF04762_consen 140 GEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISW- 217 (928)
T ss_pred CCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEE-
Confidence 99998877532 1111 1111111100 00001224457788
Q ss_pred ecCCCCEEEEEeC---C---CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC---CCcEEEEEccCCeEE
Q 014154 223 SIDDHRKFVAGTN---D---HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTGKLL 293 (430)
Q Consensus 223 ~~~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~---d~~i~iwd~~~~~~~ 293 (430)
-.||.++|+.+. . ..++||+-. +. ...+-+.-.+--.+++|-|.|++|++.-. ...|.+|. ++|-.-
T Consensus 218 -RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~-L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrh 293 (928)
T PF04762_consen 218 -RGDGEYFAVSSVEPETGSRRVIRVYSRE-GE-LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRH 293 (928)
T ss_pred -CCCCcEEEEEEEEcCCCceeEEEEECCC-ce-EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEe
Confidence 789999998774 3 468899865 22 12222212223357899999999998764 34566776 355443
Q ss_pred eeeeC---CCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc--cccCCCCc
Q 014154 294 GCFIG---KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPM 368 (430)
Q Consensus 294 ~~~~~---~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~ 368 (430)
..|.- .....|..+.|++++..||..-.|. |.+|...+..-.-+..+.-.....+..+.|+|...+ ......+.
T Consensus 294 geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~ 372 (928)
T PF04762_consen 294 GEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQ 372 (928)
T ss_pred eeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCc
Confidence 33332 2256899999999999999987666 999998876533222222121222344788886654 33444455
Q ss_pred eEecC
Q 014154 369 LEIQN 373 (430)
Q Consensus 369 i~~~~ 373 (430)
+..++
T Consensus 373 ~~~~~ 377 (928)
T PF04762_consen 373 YEIYD 377 (928)
T ss_pred EEEEE
Confidence 54443
No 290
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=9.2e-07 Score=83.02 Aligned_cols=246 Identities=14% Similarity=0.108 Sum_probs=154.5
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCC--------CceeEEeecCCeEEEecCCCCc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQN--------DPLLAVARKNGLTDILNPLNGD 86 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--------g~~l~~g~~dg~i~iwd~~~~~ 86 (430)
.-|++-+....|.|-|...- +.++.+..|...|..+.+.....|. .-+||+++..|.|.+||...+.
T Consensus 26 ~GLiAygshslV~VVDs~s~-----q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s 100 (1062)
T KOG1912|consen 26 SGLIAYGSHSLVSVVDSRSL-----QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLAS 100 (1062)
T ss_pred cceEEEecCceEEEEehhhh-----hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhh
Confidence 34566666678999998886 8888888899888888776543322 2367888999999999998877
Q ss_pred ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCc-e
Q 014154 87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT-I 165 (430)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~-i 165 (430)
.+..+.. +.+++..+.|+.... ..+..+++-.....+.+|+...+. ++|+..-... .
T Consensus 101 ~~~~l~~--------~~~~~qdl~W~~~rd----~Srd~LlaIh~ss~lvLwntdtG~----------k~Wk~~ys~~iL 158 (1062)
T KOG1912|consen 101 VINWLSH--------SNDSVQDLCWVPARD----DSRDVLLAIHGSSTLVLWNTDTGE----------KFWKYDYSHEIL 158 (1062)
T ss_pred hhhhhcC--------CCcchhheeeeeccC----cchheeEEecCCcEEEEEEccCCc----------eeeccccCCcce
Confidence 6666543 445777788776654 122356666677788889754332 4676544444 4
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEECCC-------CeeeEeeCCCCC-----------CCCCCc--CCcce-eEEEEee
Q 014154 166 AFSKVDI-SEKFSLFGGKGVEVNVWDLDK-------CEKIWTAKPPPK-----------NSLGIF--TPTWF-TSAAFLS 223 (430)
Q Consensus 166 ~~~~~~~-~~~~l~~~~~d~~i~~~d~~~-------~~~~~~~~~~~~-----------~~~~~~--~~~~v-~~~~~~~ 223 (430)
.|+.++| +.+.+..-+..|.+.+-+.-. ++..+.-..+.. ...... ....+ .++.|..
T Consensus 159 s~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf 238 (1062)
T KOG1912|consen 159 SCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF 238 (1062)
T ss_pred eeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc
Confidence 5688888 666777777777777766521 222111111110 000000 00111 1233323
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCC--CEEEEEeCCCcEEEEEcc
Q 014154 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS--FNIYIGNGSGDLASVDIR 288 (430)
Q Consensus 224 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~--~~l~~~~~d~~i~iwd~~ 288 (430)
+|.-+.++-......+.++|++-. +++.......+.+.-+.+-|++ ..|++...||.+.+|-.+
T Consensus 239 ~p~~rn~lfi~~prellv~dle~~-~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 239 SPHWRNILFITFPRELLVFDLEYE-CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred ChhhhceEEEEeccceEEEcchhh-ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEee
Confidence 565555555567889999999863 4566666555556666666654 678888899999888543
No 291
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.96 E-value=2.1e-08 Score=81.76 Aligned_cols=75 Identities=21% Similarity=0.233 Sum_probs=63.0
Q ss_pred cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCC-CCEEEEEeCCCcEEEEEccC
Q 014154 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRT 289 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~ 289 (430)
..|++++-+| ...+++++|+.||.+-+||.++...|...+..|+.+|..+-|+|. +..|+++++||.+..||..+
T Consensus 180 ~~v~~l~~hp-~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHP-AQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCc-ccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 4477777742 234577888999999999999887778888999999999999984 58999999999999999864
No 292
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.96 E-value=1.8e-06 Score=72.03 Aligned_cols=255 Identities=16% Similarity=0.118 Sum_probs=137.1
Q ss_pred CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
+..++++.-+|..|.|-..+.+-..+....+.-...... --.++| +||+.+||.+...|+|+++|+. |..+..+.
T Consensus 7 ~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQ--WRkl~W--SpD~tlLa~a~S~G~i~vfdl~-g~~lf~I~ 81 (282)
T PF15492_consen 7 SDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQ--WRKLAW--SPDCTLLAYAESTGTIRVFDLM-GSELFVIP 81 (282)
T ss_pred CCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCch--heEEEE--CCCCcEEEEEcCCCeEEEEecc-cceeEEcC
Confidence 346777777888888877766422221111222221111 234556 7899999999999999999985 44444444
Q ss_pred ccCCCCCC-CCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc
Q 014154 93 NAGDSGAQ-PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (430)
Q Consensus 93 ~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 171 (430)
.-.. +. --...|.++.+...... ......+++-...|.++-+.+..... .+-......-+.......|.++.++
T Consensus 82 p~~~--~~~d~~~Aiagl~Fl~~~~s--~~ws~ELlvi~Y~G~L~Sy~vs~gt~-q~y~e~hsfsf~~~yp~Gi~~~vy~ 156 (282)
T PF15492_consen 82 PAMS--FPGDLSDAIAGLIFLEYKKS--AQWSYELLVINYRGQLRSYLVSVGTN-QGYQENHSFSFSSHYPHGINSAVYH 156 (282)
T ss_pred cccc--cCCccccceeeeEeeccccc--cccceeEEEEeccceeeeEEEEcccC-CcceeeEEEEecccCCCceeEEEEc
Confidence 3110 11 12356777777665431 12224667777777777777643211 0000111111222234679999999
Q ss_pred CCCCEEEEEeCCCeEE-EEEC-CCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC------cEEEEE
Q 014154 172 ISEKFSLFGGKGVEVN-VWDL-DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH------QVRLYD 243 (430)
Q Consensus 172 ~~~~~l~~~~~d~~i~-~~d~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg------~i~iwd 243 (430)
|..++|++|+....=. .... ..|-..+++-.. .|... .++...|+ +..+|.
T Consensus 157 p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~--------------------~Pyyk-~v~~~~~~~~~~~~~~~~~~ 215 (282)
T PF15492_consen 157 PKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSD--------------------SPYYK-QVTSSEDDITASSKRRGLLR 215 (282)
T ss_pred CCCCEEEEeccCCCCCccccccccCceEEEEcCC--------------------CCcEE-EccccCccccccccccceee
Confidence 9999988887543200 0000 001111111110 11111 11111111 112333
Q ss_pred CCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC
Q 014154 244 TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299 (430)
Q Consensus 244 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 299 (430)
+-+.+ ...........|..|..||||.+|++...+|.|.+|++.+-++...+..+
T Consensus 216 ~~~~~-~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 216 IPSFK-FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred cccee-eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 22211 01111223468999999999999999999999999999988877766543
No 293
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.95 E-value=1.7e-06 Score=74.48 Aligned_cols=224 Identities=17% Similarity=0.215 Sum_probs=136.9
Q ss_pred CCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcc
Q 014154 74 NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST 153 (430)
Q Consensus 74 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~ 153 (430)
+|+|..||..+|+.+.....- . .........+.. . +.+++++.++.+..++.....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~-~-----~~~~~~~~~~~~-~--------~~v~~~~~~~~l~~~d~~tG~--------- 57 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLG-P-----GIGGPVATAVPD-G--------GRVYVASGDGNLYALDAKTGK--------- 57 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECS-S-----SCSSEEETEEEE-T--------TEEEEEETTSEEEEEETTTSE---------
T ss_pred CCEEEEEECCCCCEEEEEECC-C-----CCCCccceEEEe-C--------CEEEEEcCCCEEEEEECCCCC---------
Confidence 688999999999988776431 1 011221111111 1 467777777777777753221
Q ss_pred eEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEee-CCCCCCCCCCcCCcceeEEEEeecCCCCEEEE
Q 014154 154 VKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA-KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA 232 (430)
Q Consensus 154 i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 232 (430)
.+|.......+.... ...+..+++++.++.|+.+|..+|+.++.. .... ..... .......+ .+..++.
T Consensus 58 -~~W~~~~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~---~~~~~~~~----~~~~~~~ 127 (238)
T PF13360_consen 58 -VLWRFDLPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS-PPAGV---RSSSSPAV----DGDRLYV 127 (238)
T ss_dssp -EEEEEECSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS-CTCST---B--SEEEE----ETTEEEE
T ss_pred -EEEEeecccccccee-eecccccccccceeeeEecccCCcceeeeeccccc-ccccc---ccccCceE----ecCEEEE
Confidence 245544333322211 224667777788889999999999999984 3321 11100 11223333 4778888
Q ss_pred EeCCCcEEEEECCCCCcceEEEeecCCC----------e-EEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCC
Q 014154 233 GTNDHQVRLYDTSAQRRPVMSFDFRETP----------I-KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS 301 (430)
Q Consensus 233 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------i-~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 301 (430)
+..++.|..+|+.+++. +......... + ..+.+. ++ .++.++.++.+..+|+.+++.+.....
T Consensus 128 ~~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~--- 201 (238)
T PF13360_consen 128 GTSSGKLVALDPKTGKL-LWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKPI--- 201 (238)
T ss_dssp EETCSEEEEEETTTTEE-EEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEECS---
T ss_pred EeccCcEEEEecCCCcE-EEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEecC---
Confidence 88899999999999764 5555543322 1 223333 44 777777788644449999997654432
Q ss_pred CCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeE
Q 014154 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 302 ~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 338 (430)
..+..+ ...++..|+.++.++.|..||+++|+.+.+
T Consensus 202 ~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 202 SGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp S-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 223332 346777888888999999999999998764
No 294
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=2.3e-08 Score=89.88 Aligned_cols=271 Identities=10% Similarity=0.081 Sum_probs=168.4
Q ss_pred cceeeecCCCceEEEEccCCC--CCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154 15 LRALTFDSLGLIKVIEARGEH--GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
..+++++.|.+|++|.++... .+...+..++..|..++..+.|--+. ++ .++.||.|.+||.--++++..+.
T Consensus 748 NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l----r~--i~ScD~giHlWDPFigr~Laq~~ 821 (1034)
T KOG4190|consen 748 NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL----RS--IASCDGGIHLWDPFIGRLLAQME 821 (1034)
T ss_pred cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc----ce--eeeccCcceeecccccchhHhhh
Confidence 568999999999999987632 24445677888999997777765522 23 45678999999998887766443
Q ss_pred ccCCCCCCCCCCceEEEEEeec-CcccccccCceEEE-EccCCeeEEEEeeecCccccCCCcceEEeeecC----CCceE
Q 014154 93 NAGDSGAQPEDDGIVGLHLFKR-QREESSSRSRTLLT-CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA----SGTIA 166 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~----~~~i~ 166 (430)
. .+..+....+...+. +. ..+++ |+...++++++..... .+.-|.+.. +..+.
T Consensus 822 d------apk~~a~~~ikcl~nv~~-------~iliAgcsaeSTVKl~DaRsce--------~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 822 D------APKEGAGGNIKCLENVDR-------HILIAGCSAESTVKLFDARSCE--------WTCELKVCNAPGPNALTR 880 (1034)
T ss_pred c------CcccCCCceeEecccCcc-------hheeeeccchhhheeeeccccc--------ceeeEEeccCCCCchhee
Confidence 2 122223333343333 22 23444 3666778887754332 344454432 35688
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE-EECC
Q 014154 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL-YDTS 245 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i-wd~~ 245 (430)
+++..+.|+.++.+-.+|.|.+.|.++|..+.......-. ...++ .|..+.|+....|.++.+ |...
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecd---------llqla---apsdq~L~~saldHslaVnWhal 948 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECD---------LLQLA---APSDQALAQSALDHSLAVNWHAL 948 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccch---------hhhhc---CchhHHHHhhcccceeEeeehhc
Confidence 9999999999999999999999999999988766554311 22222 356677888888888888 8766
Q ss_pred CCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC-C---eEEeeeeC-CCCCCeEEEEecCCCCeEEEEe
Q 014154 246 AQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-G---KLLGCFIG-KCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 246 ~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~-~---~~~~~~~~-~~~~~v~~i~~~~~~~~l~s~~ 320 (430)
.+.. ....+....+..-+ ..-|.-|++....+.+.+|--.. . .-+..++. ...+..++++--|-+.-++.|.
T Consensus 949 dgim-h~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGn 1025 (1034)
T KOG4190|consen 949 DGIM-HLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGN 1025 (1034)
T ss_pred CCee-eeccCCCCcchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccC
Confidence 5332 22222222221111 12355666666666777773211 1 11112211 1145677888888776677788
Q ss_pred CCCcEEE
Q 014154 321 LDSYLRF 327 (430)
Q Consensus 321 ~dg~i~i 327 (430)
..|.|.+
T Consensus 1026 e~G~IaL 1032 (1034)
T KOG4190|consen 1026 EHGAIAL 1032 (1034)
T ss_pred CCCceee
Confidence 8888765
No 295
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=6.5e-09 Score=93.30 Aligned_cols=199 Identities=14% Similarity=0.085 Sum_probs=134.5
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-------CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEE
Q 014154 160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-------CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA 232 (430)
Q Consensus 160 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 232 (430)
.|...|..++--.+.+.+++++.|.+|++|.++. ..+.+++..|. .+|..+.| -.+-++++
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHk---------k~i~~igf--L~~lr~i~- 800 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHK---------KPIHDIGF--LADLRSIA- 800 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhcc---------Ccccceee--eeccceee-
Confidence 4556677776666889999999999999999863 33566777665 67888888 35555666
Q ss_pred EeCCCcEEEEECCCCCcceEEEee-cCCCeEEEEecC--CCCEEEEE-eCCCcEEEEEccCCeEEeeeeCC----CCCCe
Q 014154 233 GTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEP--DSFNIYIG-NGSGDLASVDIRTGKLLGCFIGK----CSGSI 304 (430)
Q Consensus 233 ~~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~sp--~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~----~~~~v 304 (430)
+.||-|++||.--++...+.... ..+.+..+..-| +...+++| +...+|+++|.+.+.-..+++.- ..+.+
T Consensus 801 -ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~ 879 (1034)
T KOG4190|consen 801 -SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALT 879 (1034)
T ss_pred -eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhe
Confidence 45899999998765532212211 122333333323 34455555 67789999999998876666521 14678
Q ss_pred EEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEe-cCCC
Q 014154 305 RSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEI-QNGN 375 (430)
Q Consensus 305 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~-~~~~ 375 (430)
.+++..+.|++++.+-.+|.|.+.|.++|+.+..+. .- ..-...++- |..+. +....|-++.+ |...
T Consensus 880 R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr--pm-ecdllqlaa-psdq~L~~saldHslaVnWhal 948 (1034)
T KOG4190|consen 880 RAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR--PM-ECDLLQLAA-PSDQALAQSALDHSLAVNWHAL 948 (1034)
T ss_pred eEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC--cc-cchhhhhcC-chhHHHHhhcccceeEeeehhc
Confidence 999999999999999999999999999999887642 11 111223332 33333 66666777776 6543
No 296
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.86 E-value=3.1e-08 Score=80.73 Aligned_cols=150 Identities=15% Similarity=0.206 Sum_probs=94.8
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-----CCCcEEEEECC
Q 014154 171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-----NDHQVRLYDTS 245 (430)
Q Consensus 171 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-----~dg~i~iwd~~ 245 (430)
+-.++.++++..||.+.+++.+....+.. +.....+ + -.+..+ ...++.+.++. .-+..+.|+++
T Consensus 98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~----~i~~~~~---~-~as~~~--~~~~~~i~s~~~g~~n~~d~~~a~~~~ 167 (319)
T KOG4714|consen 98 TMTDNRVCIGYADGSLAVFSTDKDLALMS----RIPSIHS---G-SASRKI--CRHGNSILSGGCGNWNAQDNFYANTLD 167 (319)
T ss_pred cccCCceEecCCCceEEEEechHHHhhhh----hcccccc---c-ccccce--eecccEEecCCcceEeeccceeeeccc
Confidence 33567889999999999999865211110 1000000 0 011111 12233343322 23356677776
Q ss_pred CCCcceEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeE-EeeeeCCCCCCeEEEEecCC-CCeEEEEeCC
Q 014154 246 AQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPT-LPIIASCGLD 322 (430)
Q Consensus 246 ~~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~d 322 (430)
..+....... ....|.+++-+|.. +.+++|+.||.+.+||.++... ...+..| ..+|+.+.|+|. +..|+++++|
T Consensus 168 p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah-k~~i~eV~FHpk~p~~Lft~sed 245 (319)
T KOG4714|consen 168 PIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAH-KAEIWEVHFHPKNPEHLFTCSED 245 (319)
T ss_pred cccccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHh-hhhhhheeccCCCchheeEecCC
Confidence 5332221112 12358999999865 5667888999999999998754 3445666 999999999994 5789999999
Q ss_pred CcEEEEECCC
Q 014154 323 SYLRFWDIKT 332 (430)
Q Consensus 323 g~i~iwd~~~ 332 (430)
|.+.-||..+
T Consensus 246 Gslw~wdas~ 255 (319)
T KOG4714|consen 246 GSLWHWDAST 255 (319)
T ss_pred CcEEEEcCCC
Confidence 9999999763
No 297
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.85 E-value=5.4e-08 Score=84.21 Aligned_cols=150 Identities=13% Similarity=0.177 Sum_probs=108.2
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCc---ceEEEeecCCCeEEEEecCCCCEEEEEeCCCc---EEEEEccCCeEEeeee
Q 014154 224 IDDHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD---LASVDIRTGKLLGCFI 297 (430)
Q Consensus 224 ~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~---i~iwd~~~~~~~~~~~ 297 (430)
++.+++|+++..+....++++....+ ++...... ..-+++.|..+...+..+..-|. +.+|....+.+ ..+.
T Consensus 71 s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~-~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-~~~l 148 (390)
T KOG3914|consen 71 SDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP-KRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC-EPIL 148 (390)
T ss_pred CCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc-cCcceeeeeeccceEEEEeecCCceeeeeecccccCc-chhh
Confidence 77888999998888887888775332 12222221 23344555445555555544444 44454444443 3455
Q ss_pred CCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCCC
Q 014154 298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDT 377 (430)
Q Consensus 298 ~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~ 377 (430)
+| -..++.++|+||+++|+++..|..|||-.+..-..+..+ +-|| ...|..++.-++..+++++.|++|++|++...
T Consensus 149 Gh-vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf-clGH-~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 149 GH-VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF-CLGH-KEFVSTISLTDNYLLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred hh-hhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh-cccc-HhheeeeeeccCceeeecCCCCcEEEEecccC
Confidence 77 889999999999999999999999999988877777776 5577 66789999998888899999999999998765
Q ss_pred c
Q 014154 378 Q 378 (430)
Q Consensus 378 ~ 378 (430)
.
T Consensus 226 k 226 (390)
T KOG3914|consen 226 K 226 (390)
T ss_pred C
Confidence 4
No 298
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.82 E-value=5.9e-08 Score=90.23 Aligned_cols=243 Identities=16% Similarity=0.167 Sum_probs=157.2
Q ss_pred eecCCCCCceeEEeecCCeEEEecCCCCc-ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeE
Q 014154 58 SIDDSQNDPLLAVARKNGLTDILNPLNGD-LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKAS 136 (430)
Q Consensus 58 ~~~~~p~g~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 136 (430)
.|..+|--++-++......-.+|++.... ..-.|-.| +|...++.+.+.+... ..+++++.+-.+.
T Consensus 74 qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lh------ghsraitd~n~~~q~p-------dVlatcsvdt~vh 140 (1081)
T KOG0309|consen 74 QWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLH------GHSRAITDINFNPQHP-------DVLATCSVDTYVH 140 (1081)
T ss_pred ecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEe------cCccceeccccCCCCC-------cceeeccccccce
Confidence 33337766777777777888899875321 11122211 3456788777766655 6889999999999
Q ss_pred EEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEeeCCCCCCCCCCcCCcc
Q 014154 137 MRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTW 215 (430)
Q Consensus 137 v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~ 215 (430)
.|++... +.++..|..-+ .....++|+-....+++.+..+.|.+||++.+ .++..++.+. ..
T Consensus 141 ~wd~rSp-------~~p~ys~~~w~-s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~v---------s~ 203 (1081)
T KOG0309|consen 141 AWDMRSP-------HRPFYSTSSWR-SAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHV---------SS 203 (1081)
T ss_pred eeeccCC-------Ccceeeeeccc-ccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccc---------ee
Confidence 9998643 34677766443 34566888875555556677778999999865 4455566543 66
Q ss_pred eeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCC--CEEEEEeCCCcEEEEEcc-----
Q 014154 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS--FNIYIGNGSGDLASVDIR----- 288 (430)
Q Consensus 216 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~--~~l~~~~~d~~i~iwd~~----- 288 (430)
|+.++|. ......+.+++.|++|+.||.......-........+|.--.+-|=| .++.---.++.+.+++-+
T Consensus 204 vn~~~fn-r~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e 282 (1081)
T KOG0309|consen 204 VNSIDFN-RFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLE 282 (1081)
T ss_pred eehHHHh-hhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhh
Confidence 7888884 33456788999999999999875332112222233566655666633 233222223344444332
Q ss_pred -----CCeEEeeeeCCCCCCeEEEEecCCC----------CeEEEEeCCCcEEEEECCC
Q 014154 289 -----TGKLLGCFIGKCSGSIRSIARHPTL----------PIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 289 -----~~~~~~~~~~~~~~~v~~i~~~~~~----------~~l~s~~~dg~i~iwd~~~ 332 (430)
..++++.|.|| ...|..+.|-..+ -.|+|-+.|..+++|-+.+
T Consensus 283 ~n~~~~~~pVh~F~GH-~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 283 WNVFDLNTPVHTFVGH-DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hccccCCcceeeecCc-chHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 24678999998 7777776664322 2699999999999998864
No 299
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.82 E-value=1.8e-08 Score=59.16 Aligned_cols=39 Identities=44% Similarity=0.624 Sum_probs=36.6
Q ss_pred CeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEE
Q 014154 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD 329 (430)
Q Consensus 290 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd 329 (430)
++++.++.+| ...|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h-~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGH-SSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESS-SSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCC-CCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3678899998 99999999999999999999999999997
No 300
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.82 E-value=1e-05 Score=77.20 Aligned_cols=301 Identities=16% Similarity=0.156 Sum_probs=164.3
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCC----Ccceee--eeecCCCCCceeEEeecCCeEEEecCCCCccc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS----SNCVLA--ASIDDSQNDPLLAVARKNGLTDILNPLNGDLR 88 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~ 88 (430)
.+++.++.+|.|.-.|+.++ +.+-.+..... ...++. .... ++..++.++.+|.|.-+|..+|+.+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG-----~~~W~~~~~~~~~~~~~~~~~~g~~~~---~~~~V~v~~~~g~v~AlD~~TG~~~ 133 (488)
T cd00216 62 GDMYFTTSHSALFALDAATG-----KVLWRYDPKLPADRGCCDVVNRGVAYW---DPRKVFFGTFDGRLVALDAETGKQV 133 (488)
T ss_pred CEEEEeCCCCcEEEEECCCC-----hhhceeCCCCCccccccccccCCcEEc---cCCeEEEecCCCeEEEEECCCCCEe
Confidence 67888888999999999887 44422221111 000010 1110 1246888889999999999999988
Q ss_pred ceeeccCCC--CCCCCCCceEEEEEeecCcccccccCceEEEEcc---------CCeeEEEEeeecCccccCCCcceEEe
Q 014154 89 VAISNAGDS--GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT---------KGKASMRSIEVTKVSAESSCSTVKSW 157 (430)
Q Consensus 89 ~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------~g~~~v~~~~~~~~~~~~~~~~i~~~ 157 (430)
..+...... .+.....+. +.. +.++.++. ++.+...+..... .+|
T Consensus 134 W~~~~~~~~~~~~~i~ssP~----v~~----------~~v~vg~~~~~~~~~~~~g~v~alD~~TG~----------~~W 189 (488)
T cd00216 134 WKFGNNDQVPPGYTMTGAPT----IVK----------KLVIIGSSGAEFFACGVRGALRAYDVETGK----------LLW 189 (488)
T ss_pred eeecCCCCcCcceEecCCCE----EEC----------CEEEEeccccccccCCCCcEEEEEECCCCc----------eee
Confidence 776542110 000000011 111 23333332 2222222221111 122
Q ss_pred eecC---------------------CCce-EEEEEcCCCCEEEEEeCCC------------------eEEEEECCCCeee
Q 014154 158 NVCA---------------------SGTI-AFSKVDISEKFSLFGGKGV------------------EVNVWDLDKCEKI 197 (430)
Q Consensus 158 ~~~~---------------------~~~i-~~~~~~~~~~~l~~~~~d~------------------~i~~~d~~~~~~~ 197 (430)
.... ...+ ...++++.+..++.++.++ .|..+|..+++..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 2211 1111 1345555677888887665 7999999999999
Q ss_pred EeeCCCCCCCCC--CcCCcceeEEEEeecCCCC---EEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCE
Q 014154 198 WTAKPPPKNSLG--IFTPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFN 272 (430)
Q Consensus 198 ~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~ 272 (430)
+.++........ ......+..+. .-++. .++.++.+|.+..+|..+++. +-..... ...++.+| ..
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~---~~~g~~~~~V~~g~~~G~l~ald~~tG~~-~W~~~~~---~~~~~~~~--~~ 340 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIK---PKDGKPVPAIVHAPKNGFFYVLDRTTGKL-ISARPEV---EQPMAYDP--GL 340 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEecc---ccCCCeeEEEEEECCCceEEEEECCCCcE-eeEeEee---ccccccCC--ce
Confidence 987643211100 00000111111 01232 577888999999999999874 3333211 11233444 23
Q ss_pred EEEE------------------eCCCcEEEEEccCCeEEeeeeCCC-C------CCe--EEEEecCCCCeEEEEeCCCcE
Q 014154 273 IYIG------------------NGSGDLASVDIRTGKLLGCFIGKC-S------GSI--RSIARHPTLPIIASCGLDSYL 325 (430)
Q Consensus 273 l~~~------------------~~d~~i~iwd~~~~~~~~~~~~~~-~------~~v--~~i~~~~~~~~l~s~~~dg~i 325 (430)
++.+ ..+|.|.-.|+.+|+.+.+..... . .+. ..+.. .+..|+.++.||.|
T Consensus 341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l 418 (488)
T cd00216 341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYF 418 (488)
T ss_pred EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeE
Confidence 4332 235789999999999887765420 0 111 11222 45678888999999
Q ss_pred EEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154 326 RFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 326 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 360 (430)
+.+|.++|+.+.+..+.+.. ...-+.|..+|+.
T Consensus 419 ~ald~~tG~~lW~~~~~~~~--~a~P~~~~~~g~~ 451 (488)
T cd00216 419 RAFDATTGKELWKFRTPSGI--QATPMTYEVNGKQ 451 (488)
T ss_pred EEEECCCCceeeEEECCCCc--eEcCEEEEeCCEE
Confidence 99999999999986654332 1123345556766
No 301
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.81 E-value=5.4e-06 Score=71.42 Aligned_cols=184 Identities=16% Similarity=0.158 Sum_probs=117.7
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014154 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 252 (430)
.+..+++++.++.|+.||..+|+.+++...... +..... ..+..+++++.++.|+.+|..+++. +.
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~----------~~~~~~---~~~~~v~v~~~~~~l~~~d~~tG~~-~W 100 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP----------ISGAPV---VDGGRVYVGTSDGSLYALDAKTGKV-LW 100 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC----------GGSGEE---EETTEEEEEETTSEEEEEETTTSCE-EE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc----------ccceee---ecccccccccceeeeEecccCCcce-ee
Confidence 567788888999999999999999988776321 111111 2455677777888999999998775 44
Q ss_pred E-EeecC--C-CeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCC----------e-EEEEecCCCCeEE
Q 014154 253 S-FDFRE--T-PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS----------I-RSIARHPTLPIIA 317 (430)
Q Consensus 253 ~-~~~~~--~-~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----------v-~~i~~~~~~~~l~ 317 (430)
. ..... . ..........+..++++..++.|..+|+++|+.+..+... ... + ..+.+ .++ .++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~-~v~ 177 (238)
T PF13360_consen 101 SIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG-EPRGSSPISSFSDINGSPVI-SDG-RVY 177 (238)
T ss_dssp EEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS-TT-SS--EEEETTEEEEEEC-CTT-EEE
T ss_pred eeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC-CCCCCcceeeecccccceEE-ECC-EEE
Confidence 4 23221 1 1122223334778899988999999999999998888764 322 1 22333 344 777
Q ss_pred EEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCCCc
Q 014154 318 SCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 318 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~~ 378 (430)
.++.++.+.-+|+.+++.+.. .. .... ..+....++.+++++.++.+..||....+
T Consensus 178 ~~~~~g~~~~~d~~tg~~~w~--~~--~~~~-~~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 178 VSSGDGRVVAVDLATGEKLWS--KP--ISGI-YSLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EECCTSSEEEEETTTTEEEEE--EC--SS-E-CECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred EEcCCCeEEEEECCCCCEEEE--ec--CCCc-cCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 777788644449999997653 22 1221 22122233444555589999999987643
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=2.1e-08 Score=84.96 Aligned_cols=131 Identities=16% Similarity=0.126 Sum_probs=99.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE
Q 014154 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 241 (430)
...|.++.|...+++++.|+.+|.|..+|++.. .++.......+.|.+.|+++... .-++++|++.+.+|.|.+
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~r-----nqG~~~~a~rlyh~Ssvtslq~L-q~s~q~LmaS~M~gkikL 325 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCR-----NQGNGWCAQRLYHDSSVTSLQIL-QFSQQKLMASDMTGKIKL 325 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeec-----ccCCCcceEEEEcCcchhhhhhh-ccccceEeeccCcCceeE
Confidence 456888889888999999999999999999864 12222223344566778888774 336788999999999999
Q ss_pred EECCCCCc--ceEEEeecCCCeEE--EEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeC
Q 014154 242 YDTSAQRR--PVMSFDFRETPIKA--VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298 (430)
Q Consensus 242 wd~~~~~~--~~~~~~~~~~~i~~--~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 298 (430)
||++.-++ -+....+|-..-.- +-+.+....+++++.|...+||.++.++++.+++-
T Consensus 326 yD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 326 YDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred eeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 99996332 37778888433222 23456678899999999999999999999888764
No 303
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.2e-07 Score=83.33 Aligned_cols=251 Identities=12% Similarity=0.040 Sum_probs=161.6
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeec-CCeEEEecCCCCcccceeec
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~ 93 (430)
.-.++++.||.++.|....- .....+..+..|...+..++.+. +|-++++++. |..++++|+.+...+..++.
T Consensus 21 ~fiiqASlDGh~KFWkKs~i--sGvEfVKhFraHL~~I~sl~~S~----dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL 94 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRI--SGVEFVKHFRAHLGVILSLAVSY----DGWLFRSVEDPDHSVKVFDVENFDMINMIKL 94 (558)
T ss_pred heEEeeecchhhhhcCCCCc--cceeehhhhHHHHHHHHhhhccc----cceeEeeccCcccceeEEEeeccchhhhccc
Confidence 44789999999999987651 22346667777888877677766 4557888666 99999999988776655554
Q ss_pred cCCCCCCCCCCceEEEEEeecCcccccccCceEE-EEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC
Q 014154 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 172 (430)
... ....-|.....+ ....++ ....++.+.|++-.. ....+..+.--|..+|.++.+++
T Consensus 95 ~~l----------Pg~a~wv~skGd---~~s~IAVs~~~sg~i~VvD~~~-------d~~q~~~fkklH~sPV~~i~y~q 154 (558)
T KOG0882|consen 95 VDL----------PGFAEWVTSKGD---KISLIAVSLFKSGKIFVVDGFG-------DFCQDGYFKKLHFSPVKKIRYNQ 154 (558)
T ss_pred ccC----------CCceEEecCCCC---eeeeEEeecccCCCcEEECCcC-------CcCccceecccccCceEEEEeec
Confidence 211 111122222200 001222 222344555554221 11144555556778999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCC------CeeeEeeCCCCCCCCCC-cCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECC
Q 014154 173 SEKFSLFGGKGVEVNVWDLDK------CEKIWTAKPPPKNSLGI-FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (430)
Q Consensus 173 ~~~~l~~~~~d~~i~~~d~~~------~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 245 (430)
.+..+++....|.|.-|..+. .+..+.++... ..+.. .......++.| +|++..+.+-+.|..|+++++.
T Consensus 155 a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT-dLy~f~K~Kt~pts~Ef--sp~g~qistl~~DrkVR~F~~K 231 (558)
T KOG0882|consen 155 AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET-DLYGFPKAKTEPTSFEF--SPDGAQISTLNPDRKVRGFVFK 231 (558)
T ss_pred cccceeeccccceeEeecCCCcccCccccccccccccc-hhhcccccccCccceEE--ccccCcccccCcccEEEEEEec
Confidence 999999999999999999873 22223332221 11111 11245678888 8999999999999999999998
Q ss_pred CCCcceEEE--------------------------------eecC-CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE
Q 014154 246 AQRRPVMSF--------------------------------DFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (430)
Q Consensus 246 ~~~~~~~~~--------------------------------~~~~-~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 292 (430)
+++. ++.+ ..|. ..-+.+.|...+++|+-|+-=| |++.++.++.+
T Consensus 232 tGkl-vqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v 309 (558)
T KOG0882|consen 232 TGKL-VQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTV 309 (558)
T ss_pred cchh-hhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeE
Confidence 8652 2211 1121 1234567888899999887766 89999999887
Q ss_pred Eeee
Q 014154 293 LGCF 296 (430)
Q Consensus 293 ~~~~ 296 (430)
++.+
T Consensus 310 ~ri~ 313 (558)
T KOG0882|consen 310 VRIL 313 (558)
T ss_pred EEEe
Confidence 7655
No 304
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=4.7e-09 Score=99.24 Aligned_cols=260 Identities=17% Similarity=0.160 Sum_probs=156.8
Q ss_pred eecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccccc
Q 014154 43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (430)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 122 (430)
..|..|...-++.+|+- +.++|++|+..|.|+++++.+|........| ...++.+.-....
T Consensus 1095 ~~frd~~~~fTc~afs~----~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH--------~SavT~vePs~dg------- 1155 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSG----GTNHLAVGSHAGEIKIFNVSSGSMEESVNCH--------QSAVTLVEPSVDG------- 1155 (1516)
T ss_pred hhhhccccceeeEEeec----CCceEEeeeccceEEEEEccCcccccccccc--------ccccccccccCCc-------
Confidence 34555666666666665 3458999999999999999999877776654 3344332221111
Q ss_pred CceEEEEcc-CC-eeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEee
Q 014154 123 SRTLLTCTT-KG-KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA 200 (430)
Q Consensus 123 ~~~~~~~~~-~g-~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 200 (430)
...++.+. .. ...+|.+.. ..+..+.|+ .-.++.|+.....-+.|+......+||+.++..+.++
T Consensus 1156 -s~~Ltsss~S~PlsaLW~~~s-------~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1156 -STQLTSSSSSSPLSALWDASS-------TGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred -ceeeeeccccCchHHHhcccc-------ccCcccccc-----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHh
Confidence 12222211 11 234444321 112222222 3456778766555555666568999999998877664
Q ss_pred CCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCC
Q 014154 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~ 280 (430)
-...... .-.-++..| +|+..+++ .||. +||.+..+ .++.|...+..+.. .|+|.|..++.-+
T Consensus 1223 lt~~~~~-----~y~~n~a~F--sP~D~LIl---ndGv--LWDvR~~~-aIh~FD~ft~~~~G-~FHP~g~eVIINS--- 1285 (1516)
T KOG1832|consen 1223 LTDTVTS-----SYSNNLAHF--SPCDTLIL---NDGV--LWDVRIPE-AIHRFDQFTDYGGG-GFHPSGNEVIINS--- 1285 (1516)
T ss_pred cCcchhh-----hhhcccccc--CCCcceEe---eCce--eeeeccHH-HHhhhhhheecccc-cccCCCceEEeec---
Confidence 3322110 011256677 88887776 4554 79999854 46666544333333 4899999888765
Q ss_pred cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe-----C-C-----------CcEEEEECCCCceeeEEEeec
Q 014154 281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG-----L-D-----------SYLRFWDIKTRQLLSAVFLKQ 343 (430)
Q Consensus 281 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-----~-d-----------g~i~iwd~~~~~~~~~~~~~~ 343 (430)
.|||+++.++++....- .-+.+.|+..|..++..- . | ...|-||......+.++. +
T Consensus 1286 --EIwD~RTF~lLh~VP~L---dqc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~--v 1358 (1516)
T KOG1832|consen 1286 --EIWDMRTFKLLHSVPSL---DQCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIP--V 1358 (1516)
T ss_pred --hhhhhHHHHHHhcCccc---cceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeee--c
Confidence 59999999988777654 236688988887665442 0 0 135566666677777743 2
Q ss_pred cccceEEeeeccccccc
Q 014154 344 HLNEVVFDSAFADKEVA 360 (430)
Q Consensus 344 ~~~~~v~~~~~s~~g~~ 360 (430)
...+.+++-+|...+
T Consensus 1359 --~R~~~Dlct~~~D~~ 1373 (1516)
T KOG1832|consen 1359 --DRCLLDLCTEPTDSF 1373 (1516)
T ss_pred --ccchhhhhcCCccce
Confidence 233567777776655
No 305
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.78 E-value=2e-07 Score=88.82 Aligned_cols=186 Identities=15% Similarity=0.121 Sum_probs=138.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014154 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 252 (430)
++..++.|+.-..+..+|+.+.+......... ..|.-+.. +++.+.+|...|+|.+-|+++.+ .+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a---------~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~-~ih 211 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA---------SGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFE-TIH 211 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccC---------CceEEEEe----cCcEEEeecccceEEeecCCcCc-eee
Confidence 45667778887789999998877665544322 23554554 78899999999999999999855 699
Q ss_pred EEeecCCCeEEEEecCCCCEEEEEeC---------CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC-CeEEEEeCC
Q 014154 253 SFDFRETPIKAVAEEPDSFNIYIGNG---------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLD 322 (430)
Q Consensus 253 ~~~~~~~~i~~~~~sp~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~d 322 (430)
++..|++.|..+.. .|++|++++. |..|++||+|+.+.+..+.-+ .+ ..-+.|+|.- ..++.++..
T Consensus 212 t~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~-~~-P~flrf~Psl~t~~~V~S~s 287 (1118)
T KOG1275|consen 212 TFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP-YG-PQFLRFHPSLTTRLAVTSQS 287 (1118)
T ss_pred eeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc-cC-chhhhhcccccceEEEEecc
Confidence 99999999987665 5889988874 456899999998887666654 33 3567788864 568888899
Q ss_pred CcEEEEECCC-CceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 323 SYLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 323 g~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
|...+-|..+ +.+..........+..+..+.+|++|.. +.+..+|.|.+|...+
T Consensus 288 Gq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 288 GQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRP 343 (1118)
T ss_pred cceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCC
Confidence 9999998443 2222222122233455799999999999 9999999999998443
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.75 E-value=3.5e-05 Score=66.66 Aligned_cols=212 Identities=19% Similarity=0.137 Sum_probs=130.9
Q ss_pred CCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeec
Q 014154 64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (430)
Q Consensus 64 ~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~ 143 (430)
+|.++++--..+.|..|+..++.... +.. ....++.+.... +.++.+...+.. ++++..
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~----------~~~~G~~~~~~~--------g~l~v~~~~~~~-~~d~~~- 69 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEV-IDL----------PGPNGMAFDRPD--------GRLYVADSGGIA-VVDPDT- 69 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEE-EES----------SSEEEEEEECTT--------SEEEEEETTCEE-EEETTT-
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEE-Eec----------CCCceEEEEccC--------CEEEEEEcCceE-EEecCC-
Confidence 56666776678899999987665322 221 124445554222 466666655543 334322
Q ss_pred CccccCCCcceE-Eeeec----CCCceEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCeeeEeeCCCCCCCCCC
Q 014154 144 KVSAESSCSTVK-SWNVC----ASGTIAFSKVDISEKFSLFGGKG--------VEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (430)
Q Consensus 144 ~~~~~~~~~~i~-~~~~~----~~~~i~~~~~~~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~~~~~ 210 (430)
+.+. +.... .......++++++|++.++.... |.|..++.. ++........
T Consensus 70 --------g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~------- 133 (246)
T PF08450_consen 70 --------GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL------- 133 (246)
T ss_dssp --------TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE-------
T ss_pred --------CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc-------
Confidence 1222 22221 23567889999999977765543 557777777 4433322221
Q ss_pred cCCcceeEEEEeecCCCCEEE-EEeCCCcEEEEECCCCCc-c--eEEE-eecC--CCeEEEEecCCCCEEEEEeCCCcEE
Q 014154 211 FTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTSAQRR-P--VMSF-DFRE--TPIKAVAEEPDSFNIYIGNGSGDLA 283 (430)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~-~--~~~~-~~~~--~~i~~~~~sp~~~~l~~~~~d~~i~ 283 (430)
...+.++| +|+++.|+ +-+..+.|..|++..... . ...+ .... +....+++..+|++.++....+.|.
T Consensus 134 ---~~pNGi~~--s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~ 208 (246)
T PF08450_consen 134 ---GFPNGIAF--SPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIV 208 (246)
T ss_dssp ---SSEEEEEE--ETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEE
T ss_pred ---ccccceEE--CCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEE
Confidence 44688999 88998665 566788899999864322 1 1122 2222 2378899999999888888899999
Q ss_pred EEEccCCeEEeeeeCCCCCCeEEEEec-CCCCeEEEE
Q 014154 284 SVDIRTGKLLGCFIGKCSGSIRSIARH-PTLPIIASC 319 (430)
Q Consensus 284 iwd~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~s~ 319 (430)
++|.. |+.+..+... ...+++++|. ++...|+..
T Consensus 209 ~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 209 VFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEE
T ss_pred EECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEE
Confidence 99987 9888888765 5689999994 665555443
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.75 E-value=6.9e-05 Score=64.82 Aligned_cols=208 Identities=15% Similarity=0.087 Sum_probs=127.3
Q ss_pred eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCC
Q 014154 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (430)
Q Consensus 125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 204 (430)
.+++-...+.+..++.. .+...++... . ...+++...+..|+.+... .+.++|+.+++.........
T Consensus 14 l~~~D~~~~~i~~~~~~---------~~~~~~~~~~--~-~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~~~~~~ 80 (246)
T PF08450_consen 14 LYWVDIPGGRIYRVDPD---------TGEVEVIDLP--G-PNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVLADLPD 80 (246)
T ss_dssp EEEEETTTTEEEEEETT---------TTEEEEEESS--S-EEEEEEECTTSEEEEEETT-CEEEEETTTTEEEEEEEEET
T ss_pred EEEEEcCCCEEEEEECC---------CCeEEEEecC--C-CceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEEeeccC
Confidence 34444455556555542 2244445432 2 6777787333556656655 45666998875543332211
Q ss_pred CCCCCCcCCcceeEEEEeecCCCCEEEEEeCC--------CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEE-E
Q 014154 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY-I 275 (430)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~-~ 275 (430)
.. ......+.+++ .++|++.++.... |.|..++.. ++ +..+...-...+.|+|+|+++.|+ +
T Consensus 81 ~~----~~~~~~ND~~v--d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 81 GG----VPFNRPNDVAV--DPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVA 151 (246)
T ss_dssp TC----SCTEEEEEEEE---TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEEESSEEEEEEETTSSEEEEE
T ss_pred CC----cccCCCceEEE--cCCCCEEEEecCCCccccccccceEEECCC-Ce--EEEEecCcccccceEECCcchheeec
Confidence 00 01156788999 8999977776544 557777777 33 222222335678999999998776 4
Q ss_pred EeCCCcEEEEEccCC-e------EEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccce
Q 014154 276 GNGSGDLASVDIRTG-K------LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEV 348 (430)
Q Consensus 276 ~~~d~~i~iwd~~~~-~------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 348 (430)
-+..+.|..|++... . ....+... .+..-.+++..+|++.++.-..+.|.+++.. |+.+..+.+... .
T Consensus 152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~---~ 226 (246)
T PF08450_consen 152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGG-PGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP---R 226 (246)
T ss_dssp ETTTTEEEEEEEETTTCCEEEEEEEEE-SSS-SCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS---S
T ss_pred ccccceeEEEeccccccceeeeeeEEEcCCC-CcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC---C
Confidence 556788999998632 1 12222322 2347889999999988877788999999987 999888765522 4
Q ss_pred EEeeecc-cccc
Q 014154 349 VFDSAFA-DKEV 359 (430)
Q Consensus 349 v~~~~~s-~~g~ 359 (430)
+++++|. ++..
T Consensus 227 ~t~~~fgg~~~~ 238 (246)
T PF08450_consen 227 PTNCAFGGPDGK 238 (246)
T ss_dssp EEEEEEESTTSS
T ss_pred EEEEEEECCCCC
Confidence 6899994 4433
No 308
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=9.3e-08 Score=83.91 Aligned_cols=198 Identities=14% Similarity=0.017 Sum_probs=137.3
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEeeCC
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKP 202 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~ 202 (430)
..+++++.||.+..|.-.... .-..++- ...|...|.+++.+-++-++.+.+. |..++++|+++-..+.-++.
T Consensus 21 ~fiiqASlDGh~KFWkKs~is-----GvEfVKh-FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL 94 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRIS-----GVEFVKH-FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKL 94 (558)
T ss_pred heEEeeecchhhhhcCCCCcc-----ceeehhh-hHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccc
Confidence 578889999988888643211 0112222 2356677888899989999999777 99999999987555433332
Q ss_pred CCCCCCCCcCCcceeEEEEeecCCC---CEEEEEeCCCcEEEEECCCCCcceE-EEeecCCCeEEEEecCCCCEEEEEeC
Q 014154 203 PPKNSLGIFTPTWFTSAAFLSIDDH---RKFVAGTNDHQVRLYDTSAQRRPVM-SFDFRETPIKAVAEEPDSFNIYIGNG 278 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~ 278 (430)
.. ....+.|..++.. ..-++.-.++.+.++|-....++.. .-..|..+|.++.++|-+..+++...
T Consensus 95 ~~----------lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 95 VD----------LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred cc----------CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 21 1112223213321 2333445688999999887554443 44558999999999999999999999
Q ss_pred CCcEEEEEccC------CeEEeee---------eCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeE
Q 014154 279 SGDLASVDIRT------GKLLGCF---------IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 279 d~~i~iwd~~~------~~~~~~~---------~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 338 (430)
.|.|.-|.... .+....+ .. ......++.|+|++..+.+-+.|..|+++++++|+.++.
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K-~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK-AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccc-cccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 99999998862 1111111 12 245678999999999999999999999999999876554
No 309
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.71 E-value=6.1e-08 Score=56.86 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=35.4
Q ss_pred ceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEE
Q 014154 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286 (430)
Q Consensus 250 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd 286 (430)
++..+.+|...|++++|+|++.+|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 5788999999999999999999999999999999997
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.67 E-value=1.7e-05 Score=68.35 Aligned_cols=203 Identities=15% Similarity=0.112 Sum_probs=139.7
Q ss_pred ceEEEEEcC-CCCEEEEEeCCCe-EEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-----C
Q 014154 164 TIAFSKVDI-SEKFSLFGGKGVE-VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----D 236 (430)
Q Consensus 164 ~i~~~~~~~-~~~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----d 236 (430)
....++.+| ....++.+-.-|+ ..+||..+++....+...... ...-...| +++|++|++.-. .
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR-------HFyGHg~f--s~dG~~LytTEnd~~~g~ 76 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR-------HFYGHGVF--SPDGRLLYTTENDYETGR 76 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC-------EEecCEEE--cCCCCEEEEeccccCCCc
Confidence 445678888 5666777777665 678999999888777664432 11234567 899999998643 5
Q ss_pred CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe------------------CCCcEEEEEccCCeEEeeee-
Q 014154 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN------------------GSGDLASVDIRTGKLLGCFI- 297 (430)
Q Consensus 237 g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~------------------~d~~i~iwd~~~~~~~~~~~- 297 (430)
|.|-|||....-..+..+..|.-.-..+.+.||++.|+++. .+-.+.+.|..+|+++.+..
T Consensus 77 G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L 156 (305)
T PF07433_consen 77 GVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL 156 (305)
T ss_pred EEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec
Confidence 78999999954445777877776777888999998888773 22346677888898877643
Q ss_pred --CCCCCCeEEEEecCCCCeEEEEeCCC-------cEEEEECCCCceeeEEEee----ccccceEEeeeccccccc--cc
Q 014154 298 --GKCSGSIRSIARHPTLPIIASCGLDS-------YLRFWDIKTRQLLSAVFLK----QHLNEVVFDSAFADKEVA--NA 362 (430)
Q Consensus 298 --~~~~~~v~~i~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~s~~g~~--~~ 362 (430)
.+|...|..+++.++|..++..-..| .|.+++. ++.+..+... ......+-+++++++|.. ++
T Consensus 157 p~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~t 234 (305)
T PF07433_consen 157 PPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVT 234 (305)
T ss_pred CccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEE
Confidence 22377899999999997665554333 2344433 3333322221 112345789999999976 66
Q ss_pred cCCCCceEecCCCCC
Q 014154 363 AADAPMLEIQNGNDT 377 (430)
Q Consensus 363 ~~~d~~i~~~~~~~~ 377 (430)
+-..+.+.+|+....
T Consensus 235 sPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 235 SPRGGRVAVWDAATG 249 (305)
T ss_pred CCCCCEEEEEECCCC
Confidence 778899999977654
No 311
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1.1e-05 Score=73.05 Aligned_cols=280 Identities=11% Similarity=0.043 Sum_probs=157.0
Q ss_pred eeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec--cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC
Q 014154 56 AASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN--AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (430)
Q Consensus 56 ~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 133 (430)
.+.| +|-|.||++-..-| |.+|--.+...++.|.. +..+.|+|....+.....-+... ----..++
T Consensus 215 yv~w--SP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~---------~~~d~e~~ 282 (698)
T KOG2314|consen 215 YVRW--SPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIV---------EEDDNEGQ 282 (698)
T ss_pred eEEe--cCCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCcccc---------CcccCCCc
Confidence 3445 88899999987644 88997666665665543 23333444444332111100000 00012345
Q ss_pred eeEEEEeeecCccccCCCcceEEeeec-CC-CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCc
Q 014154 134 KASMRSIEVTKVSAESSCSTVKSWNVC-AS-GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (430)
Q Consensus 134 ~~~v~~~~~~~~~~~~~~~~i~~~~~~-~~-~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 211 (430)
.+.||++..+.. .+.|..- .. ..-.-..||.+++++|--..+ .|.||+......+ ..+...
T Consensus 283 ~l~IWDI~tG~l--------krsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~ll-d~Kslk------- 345 (698)
T KOG2314|consen 283 QLIIWDIATGLL--------KRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLL-DKKSLK------- 345 (698)
T ss_pred eEEEEEccccch--------hcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeee-cccccC-------
Confidence 778888765432 1222211 11 112246789999999977765 7999987653222 111111
Q ss_pred CCcceeEEEEeecCCCCEEEEEeC-----CCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe---------
Q 014154 212 TPTWFTSAAFLSIDDHRKFVAGTN-----DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN--------- 277 (430)
Q Consensus 212 ~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~--------- 277 (430)
...|....| +|.+++||.-.. -..+.+-.+.+.+. +++.+.+.-.=..+-|-.+|.+|..--
T Consensus 346 -i~gIr~Fsw--sP~~~llAYwtpe~~~~parvtL~evPs~~~-iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~ 421 (698)
T KOG2314|consen 346 -ISGIRDFSW--SPTSNLLAYWTPETNNIPARVTLMEVPSKRE-IRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVK 421 (698)
T ss_pred -CccccCccc--CCCcceEEEEcccccCCcceEEEEecCccce-eeeccceeeeccEEEeccCCcEEEEEEEeecccccc
Confidence 145777788 788887775432 12455555555332 444444332223455666777776432
Q ss_pred -CCCcEEEEEccCCeE-EeeeeCCCCCCeEEEEecCCCCeEEEEeC---CCcEEEEECCC----CceeeEEEeeccccce
Q 014154 278 -GSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIASCGL---DSYLRFWDIKT----RQLLSAVFLKQHLNEV 348 (430)
Q Consensus 278 -~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~---dg~i~iwd~~~----~~~~~~~~~~~~~~~~ 348 (430)
.-..+.|+.++.... +..+.- ...|...+|-|.|..+++-+. -.++.+|.+++ .+++.. +.. ..
T Consensus 422 g~f~n~eIfrireKdIpve~vel--ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~--~dk---~~ 494 (698)
T KOG2314|consen 422 GQFSNLEIFRIREKDIPVEVVEL--KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKE--LDK---KF 494 (698)
T ss_pred ceEeeEEEEEeeccCCCceeeec--chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhh--hcc---cc
Confidence 112355666554432 333333 568999999999987766543 35788888873 223333 211 22
Q ss_pred EEeeeccccccc-cc---cCCCCceEecCCC
Q 014154 349 VFDSAFADKEVA-NA---AADAPMLEIQNGN 375 (430)
Q Consensus 349 v~~~~~s~~g~~-~~---~~~d~~i~~~~~~ 375 (430)
.+.+.|+|.|++ +. ++..|.+.++|.+
T Consensus 495 ~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 495 ANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred cceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 578899999998 32 3567899999877
No 312
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=1e-06 Score=83.06 Aligned_cols=183 Identities=21% Similarity=0.191 Sum_probs=123.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 242 (430)
..+.|++++ +.+|+.|+.+|.|++++.... . .....+. .. ..+|.++++|+.||+|.|.
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s---------~~--------~~~Gey~asCS~DGkv~I~ 98 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHS---------SS--------ILEGEYVASCSDDGKVVIG 98 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccc---------cc--------ccCCceEEEecCCCcEEEe
Confidence 345555554 788999999999999987532 1 2222221 11 3479999999999999999
Q ss_pred ECCCCCcceEEEeecCCCeEEEEecCC-----CCEEEEEeCCCcEEEEEccC-C-eEEeeeeCCCCCCeEEEEecCCCCe
Q 014154 243 DTSAQRRPVMSFDFRETPIKAVAEEPD-----SFNIYIGNGSGDLASVDIRT-G-KLLGCFIGKCSGSIRSIARHPTLPI 315 (430)
Q Consensus 243 d~~~~~~~~~~~~~~~~~i~~~~~sp~-----~~~l~~~~~d~~i~iwd~~~-~-~~~~~~~~~~~~~v~~i~~~~~~~~ 315 (430)
.+-+.+. ...+..+ .++.+++++|+ .+.+++|+..| +.++.-+- + +....+... .++|.++.| .|.+
T Consensus 99 sl~~~~~-~~~~df~-rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~-eG~I~~i~W--~g~l 172 (846)
T KOG2066|consen 99 SLFTDDE-ITQYDFK-RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG-EGPIHSIKW--RGNL 172 (846)
T ss_pred eccCCcc-ceeEecC-CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC-ccceEEEEe--cCcE
Confidence 9888664 4555544 68999999998 47889999888 77775431 1 111134444 789999999 7889
Q ss_pred EEEEeCCCcEEEEECCCCceeeEEEeecc---ccceEEeeeccccccccccCCCCceEecCC
Q 014154 316 IASCGLDSYLRFWDIKTRQLLSAVFLKQH---LNEVVFDSAFADKEVANAAADAPMLEIQNG 374 (430)
Q Consensus 316 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~ 374 (430)
+|-++.+| |+|||+.+++.+..+..+.. ....-..+.|.++.+++. |...+|+|...
T Consensus 173 IAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-GW~d~v~i~~I 232 (846)
T KOG2066|consen 173 IAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-GWGDSVKICSI 232 (846)
T ss_pred EEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-ecCCeEEEEEE
Confidence 99998888 99999999988876532211 011124566766655433 33344554443
No 313
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.64 E-value=1.2e-06 Score=83.82 Aligned_cols=143 Identities=15% Similarity=0.172 Sum_probs=108.4
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC---------CCcEEEE
Q 014154 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---------DHQVRLY 242 (430)
Q Consensus 172 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---------dg~i~iw 242 (430)
.+++++.+|...|+|.+-|.++.+.+.++..|. +.|..+.. .|++|++|+. |..|+||
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs---------~siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVY 251 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS---------GSISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVY 251 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeeccc---------cceeeeec----cCCeEEEeecccccccccccchhhhh
Confidence 368899999999999999999999999999987 55666555 7889999875 5678999
Q ss_pred ECCCCCcceEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEEE---ccCCeE-EeeeeCCCCCCeEEEEecCCCCeEE
Q 014154 243 DTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVD---IRTGKL-LGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 243 d~~~~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd---~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~ 317 (430)
|++..+. +.-+..+-++ .-+.|+|.- ..+++.+..|...+-| +.+... +..+..- ...+..++++++++.|+
T Consensus 252 DLRmmra-l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~-~s~i~~fDiSsn~~ala 328 (1118)
T KOG1275|consen 252 DLRMMRA-LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPN-GSGISAFDISSNGDALA 328 (1118)
T ss_pred hhhhhhc-cCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccC-CCcceeEEecCCCceEE
Confidence 9998653 3334444333 456777753 5778888899999999 333322 2222222 45699999999999999
Q ss_pred EEeCCCcEEEEEC
Q 014154 318 SCGLDSYLRFWDI 330 (430)
Q Consensus 318 s~~~dg~i~iwd~ 330 (430)
.|..+|.|.+|.-
T Consensus 329 fgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 329 FGDHEGHVNLWAD 341 (1118)
T ss_pred EecccCcEeeecC
Confidence 9999999999973
No 314
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.63 E-value=2.6e-05 Score=73.60 Aligned_cols=94 Identities=15% Similarity=0.029 Sum_probs=67.7
Q ss_pred CCcEEEEECCC----CCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeE------------EeeeeC
Q 014154 236 DHQVRLYDTSA----QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKL------------LGCFIG 298 (430)
Q Consensus 236 dg~i~iwd~~~----~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~------------~~~~~~ 298 (430)
++.|.+.|..+ +...+..+.-. .....+.++|||+++++++ .+++|.++|+.+.+. +.+...
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 35677888776 33334444433 4568899999999887766 489999999987552 344443
Q ss_pred CCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154 299 KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 299 ~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~ 332 (430)
.......+|.++|....|--.|..|-.||+.+
T Consensus 374 --GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 --GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred --CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 22345678999998888888999999999876
No 315
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.60 E-value=0.00042 Score=66.55 Aligned_cols=187 Identities=14% Similarity=0.154 Sum_probs=113.5
Q ss_pred EEEEcCCCCEEEEEeCC-----C-----------eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC--
Q 014154 167 FSKVDISEKFSLFGGKG-----V-----------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-- 228 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~d-----~-----------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-- 228 (430)
.+++++...+++.+..+ + .|...|+++|+..+.++......-.........-+.. ..++.
T Consensus 238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~--~~~G~~~ 315 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDL--KKDGKPR 315 (527)
T ss_pred ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEe--ccCCcEE
Confidence 45777777777776622 2 6788899999999988775443333221122222222 34665
Q ss_pred -EEEEEeCCCcEEEEECCCCCcceE--------EE----eecC-CC-----------------e-----------EEEEe
Q 014154 229 -KFVAGTNDHQVRLYDTSAQRRPVM--------SF----DFRE-TP-----------------I-----------KAVAE 266 (430)
Q Consensus 229 -~l~s~~~dg~i~iwd~~~~~~~~~--------~~----~~~~-~~-----------------i-----------~~~~~ 266 (430)
.++.+..+|.+++.|-.+++. +. .+ .... .+ + ..+++
T Consensus 316 ~~v~~~~K~G~~~vlDr~tG~~-i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~ 394 (527)
T TIGR03075 316 KLLAHADRNGFFYVLDRTNGKL-LSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAY 394 (527)
T ss_pred EEEEEeCCCceEEEEECCCCce-eccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceE
Confidence 788899999999999998763 21 11 0000 00 0 12556
Q ss_pred cCCCCEEEEEeCC---------------------------------CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC
Q 014154 267 EPDSFNIYIGNGS---------------------------------GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (430)
Q Consensus 267 sp~~~~l~~~~~d---------------------------------~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~ 313 (430)
+|+..++++...+ |.|.-+|+.+++.+.+.... .....+. +.-.+
T Consensus 395 Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~-~p~~~~~-l~t~g 472 (527)
T TIGR03075 395 SPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKED-FPLWGGV-LATAG 472 (527)
T ss_pred CCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCC-CCCCCcc-eEECC
Confidence 6666555544332 45778899999888776642 1111121 11244
Q ss_pred CeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154 314 PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 314 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 360 (430)
.+++.++.||.++.+|.++|+.+..+.+.+.... .-+.|.-+|+.
T Consensus 473 ~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a--~P~ty~~~G~q 517 (527)
T TIGR03075 473 DLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVG--PPVTYEQDGKQ 517 (527)
T ss_pred cEEEEECCCCeEEEEECCCCCEeEEEeCCCCcee--cCEEEEeCCEE
Confidence 5777788899999999999999998766543222 23444456665
No 316
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.59 E-value=9.3e-05 Score=61.05 Aligned_cols=262 Identities=13% Similarity=0.107 Sum_probs=129.3
Q ss_pred eeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCC
Q 014154 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (430)
Q Consensus 17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 96 (430)
++.|...|.+.+-+.++| .....+.. .+.+.+-+.. .+++.++..|+.|+.....|+.+...+...+.-
T Consensus 66 VV~GCy~g~lYfl~~~tG-----s~~w~f~~-~~~vk~~a~~---d~~~glIycgshd~~~yalD~~~~~cVykskcg-- 134 (354)
T KOG4649|consen 66 VVLGCYSGGLYFLCVKTG-----SQIWNFVI-LETVKVRAQC---DFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCG-- 134 (354)
T ss_pred EEEEEccCcEEEEEecch-----hheeeeee-hhhhccceEE---cCCCceEEEecCCCcEEEecccccceEEecccC--
Confidence 566777777777777775 33322221 1222222222 467789999999999999999888777665431
Q ss_pred CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCE
Q 014154 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF 176 (430)
Q Consensus 97 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~ 176 (430)
+.+..--..+... +.+.++...|.+.-......+ .-.+|.....++|..--.- -+..
T Consensus 135 -------G~~f~sP~i~~g~-------~sly~a~t~G~vlavt~~~~~--------~~~~w~~~~~~PiF~splc-v~~s 191 (354)
T KOG4649|consen 135 -------GGTFVSPVIAPGD-------GSLYAAITAGAVLAVTKNPYS--------STEFWAATRFGPIFASPLC-VGSS 191 (354)
T ss_pred -------CceeccceecCCC-------ceEEEEeccceEEEEccCCCC--------cceehhhhcCCccccCcee-ccce
Confidence 1111111112211 355555555544333332221 2334554444554432110 2445
Q ss_pred EEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC--------CcEEEEECCCCC
Q 014154 177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--------HQVRLYDTSAQR 248 (430)
Q Consensus 177 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~ 248 (430)
+..++-||.+.-++ +.|+.++.+..... |..--....|..+.|..+..+ ..-.+|..+.+.
T Consensus 192 v~i~~VdG~l~~f~-~sG~qvwr~~t~Gp----------If~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~ 260 (354)
T KOG4649|consen 192 VIITTVDGVLTSFD-ESGRQVWRPATKGP----------IFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGT 260 (354)
T ss_pred EEEEEeccEEEEEc-CCCcEEEeecCCCc----------eecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCc
Confidence 66677788888777 66677775543321 100000001222233333222 223355555432
Q ss_pred cce------EEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCC---eEEEE-----e-cC--
Q 014154 249 RPV------MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS---IRSIA-----R-HP-- 311 (430)
Q Consensus 249 ~~~------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---v~~i~-----~-~~-- 311 (430)
... ..|..|+-.+ | ..++|..++.||.+.|.-.+ +.+.....| .+. ++.+. | ||
T Consensus 261 t~~vy~~p~l~F~~h~~~~-----S-~~~ll~~~s~dgkv~il~~~--~sl~~~~s~-~g~lq~~~~~el~~eIFsSPvi 331 (354)
T KOG4649|consen 261 TLHVYLSPKLRFDLHSPGI-----S-YPKLLRRSSGDGKVMILMTS--KSLAEISSN-GGELQNLEAIELSNEIFSSPVI 331 (354)
T ss_pred EEEEEeCcccceeccCCCC-----c-chhhhhhhcCCCcEEEEEec--ccccccccC-CCccceEEEeecCcccccCCeE
Confidence 110 1122222111 1 13577788899988886332 222233222 222 22222 2 22
Q ss_pred -CCCeEEEEeCCCcEEEEECCCC
Q 014154 312 -TLPIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 312 -~~~~l~s~~~dg~i~iwd~~~~ 333 (430)
+| +|+.|+.|..|+-||+.++
T Consensus 332 i~g-rl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 332 IDG-RLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred Ecc-EEEEEEccCeEEEEecccc
Confidence 34 5788889999999999875
No 317
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.54 E-value=0.00035 Score=61.20 Aligned_cols=276 Identities=12% Similarity=0.054 Sum_probs=150.5
Q ss_pred CceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEe----------ecCCeEEEecCCCCcccceeec
Q 014154 24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVA----------RKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 24 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g----------~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
+.+.|.|...+ +++-.+...-.. - +.. +|+|+.++++ -..-.|.+||..+-.+..++..
T Consensus 17 ~rv~viD~d~~-----k~lGmi~~g~~~--~--~~~--spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~i 85 (342)
T PF06433_consen 17 SRVYVIDADSG-----KLLGMIDTGFLG--N--VAL--SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEI 85 (342)
T ss_dssp EEEEEEETTTT-----EEEEEEEEESSE--E--EEE---TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred ceEEEEECCCC-----cEEEEeecccCC--c--eeE--CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEec
Confidence 57999998887 555433321111 1 222 5677777663 3445699999988877766543
Q ss_pred cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEE-----
Q 014154 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS----- 168 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~----- 168 (430)
- ...... ... .. +.+.....+..+.|+++.-.. .|.+.++..+.-+..+
T Consensus 86 P-------~k~R~~---~~~-~~-------~~~~ls~dgk~~~V~N~TPa~--------SVtVVDl~~~kvv~ei~~PGC 139 (342)
T PF06433_consen 86 P-------PKPRAQ---VVP-YK-------NMFALSADGKFLYVQNFTPAT--------SVTVVDLAAKKVVGEIDTPGC 139 (342)
T ss_dssp T-------TS-B-----BS---G-------GGEEE-TTSSEEEEEEESSSE--------EEEEEETTTTEEEEEEEGTSE
T ss_pred C-------Ccchhe---ecc-cc-------cceEEccCCcEEEEEccCCCC--------eEEEEECCCCceeeeecCCCE
Confidence 1 100111 001 01 234444445566677654222 4555555544332221
Q ss_pred -EEcC-CCCEEEEEeCCCeEEEEECC-CCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECC
Q 014154 169 -KVDI-SEKFSLFGGKGVEVNVWDLD-KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (430)
Q Consensus 169 -~~~~-~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 245 (430)
-.-| ....+.+-|.||.+.-..+. .|+....... .+.......+..-++ ...+..++--+.+|.|+--|+.
T Consensus 140 ~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~----~F~~~~dp~f~~~~~--~~~~~~~~F~Sy~G~v~~~dls 213 (342)
T PF06433_consen 140 WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK----VFDPDDDPLFEHPAY--SRDGGRLYFVSYEGNVYSADLS 213 (342)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE----ESSTTTS-B-S--EE--ETTTTEEEEEBTTSEEEEEEET
T ss_pred EEEEecCCCceEEEecCCceEEEEECCCCCEeEeecc----ccCCCCcccccccce--ECCCCeEEEEecCCEEEEEecc
Confidence 1222 23567788999999999887 4544322110 111101111222233 3344445546899999999988
Q ss_pred CCCc-ceEEEeec----------CCCeEEEEecCCCCEEEEEeCC----------CcEEEEEccCCeEEeeeeCCCCCCe
Q 014154 246 AQRR-PVMSFDFR----------ETPIKAVAEEPDSFNIYIGNGS----------GDLASVDIRTGKLLGCFIGKCSGSI 304 (430)
Q Consensus 246 ~~~~-~~~~~~~~----------~~~i~~~~~sp~~~~l~~~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~v 304 (430)
.... ....+..- .+.-.-+++++..+.|++--.. ..|.+||+.+++.+.++.. ..++
T Consensus 214 g~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l--~~~~ 291 (342)
T PF06433_consen 214 GDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL--EHPI 291 (342)
T ss_dssp TSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE--EEEE
T ss_pred CCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC--CCcc
Confidence 6442 11122110 1223457777766666654321 2488899999999999986 3468
Q ss_pred EEEEecCCCC-eEEEE-eCCCcEEEEECCCCceeeEEEeecc
Q 014154 305 RSIARHPTLP-IIASC-GLDSYLRFWDIKTRQLLSAVFLKQH 344 (430)
Q Consensus 305 ~~i~~~~~~~-~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~ 344 (430)
.+|..+.+.+ +|++. ..++.|.+||..+|+.+.++.--|.
T Consensus 292 ~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~ 333 (342)
T PF06433_consen 292 DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGE 333 (342)
T ss_dssp SEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SS
T ss_pred ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCC
Confidence 8999998764 66554 4578999999999999998653344
No 318
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.53 E-value=4.5e-05 Score=70.96 Aligned_cols=137 Identities=8% Similarity=-0.007 Sum_probs=89.0
Q ss_pred eeEEEEeecCCCCE-EEEEeCC---CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-C--CCcEEEEEcc
Q 014154 216 FTSAAFLSIDDHRK-FVAGTND---HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-G--SGDLASVDIR 288 (430)
Q Consensus 216 v~~~~~~~~~~~~~-l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~--d~~i~iwd~~ 288 (430)
.....| +|+++. ++..+.+ ..|.++|+.+++. ..+....+......|+|||+.|+... . +..|.++|+.
T Consensus 190 ~~~p~w--SpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 190 NIFPKW--ANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred eEeEEE--CCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 456778 899984 6654443 4699999988653 33333445667788999998776543 2 3568888988
Q ss_pred CCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCC-C--cEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccC
Q 014154 289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD-S--YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAA 364 (430)
Q Consensus 289 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~ 364 (430)
+++.. .+..+ ........|+|||+.|+..+.. + .|++.|+.+++..... ..+. ....|+|||+. +...
T Consensus 266 ~g~~~-~LT~~-~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt-~~g~-----~~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 266 TKTLT-QITNY-PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV-FHGK-----NNSSVSTYKNYIVYSS 337 (419)
T ss_pred CCcEE-EcccC-CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc-cCCC-----cCceECCCCCEEEEEE
Confidence 77643 34433 3323456899999877766532 2 6888899887764432 2222 12489999997 4433
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=4.9e-05 Score=72.75 Aligned_cols=211 Identities=14% Similarity=0.076 Sum_probs=128.5
Q ss_pred CCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCc-eEEEEEeecCcccccccCceEEEEccCC-----ee
Q 014154 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDG-IVGLHLFKRQREESSSRSRTLLTCTTKG-----KA 135 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~ 135 (430)
.+.+..++.|+.+|.|.+.+- .-+.+..++.+ ... +..+...+.. ..+++..+|+ .+
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~--------~~siv~~L~~~~~~--------~~L~sv~Ed~~~np~ll 94 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNS-SFQLIRGFQAY--------EQSIVQFLYILNKQ--------NFLFSVGEDEQGNPVLL 94 (933)
T ss_pred cCCCceEEEeeccccEEEecc-cceeeehheec--------chhhhhHhhcccCc--------eEEEEEeecCCCCceEE
Confidence 456678999999999999874 33333555542 122 2222222222 2566555554 47
Q ss_pred EEEEeeecCccc-cCCCcceEEeeec---CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeeeEeeCCCCCCCCC
Q 014154 136 SMRSIEVTKVSA-ESSCSTVKSWNVC---ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK--CEKIWTAKPPPKNSLG 209 (430)
Q Consensus 136 ~v~~~~~~~~~~-~~~~~~i~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~~~ 209 (430)
.||+++...... .-.-+..+++... ...++.+++++.+-+.+++|-.+|.|.++.-+- .+-.+....+.
T Consensus 95 kiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~----- 169 (933)
T KOG2114|consen 95 KIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHR----- 169 (933)
T ss_pred EEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeecc-----
Confidence 899887553211 1111122444422 235788999999999999999999999985431 11111111111
Q ss_pred CcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC
Q 014154 210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (430)
Q Consensus 210 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 289 (430)
...+|+.++|. .++..++-...-..|.+|.+.........+..|+..+.|..+++....+++++ +..|.+||...
T Consensus 170 --~~~pITgL~~~--~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~ 244 (933)
T KOG2114|consen 170 --GKEPITGLALR--SDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDG 244 (933)
T ss_pred --CCCCceeeEEe--cCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCC
Confidence 12789999995 44544222233457999999853312444777888999999987666466554 45699999876
Q ss_pred CeEEeeee-CC
Q 014154 290 GKLLGCFI-GK 299 (430)
Q Consensus 290 ~~~~~~~~-~~ 299 (430)
..+...|. +|
T Consensus 245 ~~~cfaf~~g~ 255 (933)
T KOG2114|consen 245 RGPCFAFEVGE 255 (933)
T ss_pred cceeeeecCCC
Confidence 66666776 54
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=1.4e-05 Score=75.70 Aligned_cols=174 Identities=14% Similarity=0.071 Sum_probs=118.5
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCC
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 203 (430)
..++.|+..|.+.+......+. ..+ .|... ..+|.++++|+.||+|.|..+-+.+....+.-+
T Consensus 50 ~~~~~GtH~g~v~~~~~~~~~~---------~~~--~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~ 112 (846)
T KOG2066|consen 50 KFFALGTHRGAVYLTTCQGNPK---------TNF--DHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK 112 (846)
T ss_pred ceeeeccccceEEEEecCCccc---------ccc--ccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecC
Confidence 3677788888888877654321 111 11111 458999999999999999999887766555443
Q ss_pred CCCCCCCcCCcceeEEEEeecCC-----CCEEEEEeCCCcEEEEECCCCCc-ceEEEeecCCCeEEEEecCCCCEEEEEe
Q 014154 204 PKNSLGIFTPTWFTSAAFLSIDD-----HRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 277 (430)
.++.++++ +|+ ...+++|+.-| +.++.-+-... ....+....++|.++.|. |++||=++
T Consensus 113 ----------rpiksial--~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan 177 (846)
T KOG2066|consen 113 ----------RPIKSIAL--HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN 177 (846)
T ss_pred ----------CcceeEEe--ccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec
Confidence 45788888 565 56899999888 77765432111 112345557899999996 66998887
Q ss_pred CCCcEEEEEccCCeEEeeeeCCC-----CCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154 278 GSGDLASVDIRTGKLLGCFIGKC-----SGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 278 ~d~~i~iwd~~~~~~~~~~~~~~-----~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~ 332 (430)
.+| |++||+.+.+.+..++..+ ..-...+.|.++.+ |+.| +--+|+|..++.
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIKK 234 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEec
Confidence 777 8999999998887766431 11234577876654 4444 445689888873
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2.8e-06 Score=73.89 Aligned_cols=85 Identities=15% Similarity=0.166 Sum_probs=67.4
Q ss_pred cCCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCc
Q 014154 160 CASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238 (430)
Q Consensus 160 ~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 238 (430)
.++..|..++|+|..+ ++..++.+..|.|.|+++...+..+..+ ..+.+++|. -.+.++|..|...|.
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~----------~~~wSC~wD-lde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY----------NQIWSCCWD-LDERHVIYAGLQNGM 259 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc----------CCceeeeec-cCCcceeEEeccCce
Confidence 4567899999999766 7888999999999999998877776654 568888994 234567888889999
Q ss_pred EEEEECCCCCcceEEEe
Q 014154 239 VRLYDTSAQRRPVMSFD 255 (430)
Q Consensus 239 i~iwd~~~~~~~~~~~~ 255 (430)
|.+||++..+.++..+.
T Consensus 260 VlvyD~R~~~~~~~e~~ 276 (463)
T KOG1645|consen 260 VLVYDMRQPEGPLMELV 276 (463)
T ss_pred EEEEEccCCCchHhhhh
Confidence 99999998765544443
No 322
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.47 E-value=0.00041 Score=57.37 Aligned_cols=299 Identities=11% Similarity=0.041 Sum_probs=154.6
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCC-CCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGD-PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
..++.|+..+.++--|..+| .+. |.. -...+.+.++- -|++++.|...|.+.+.+..+|.....+..
T Consensus 24 T~v~igSHs~~~~avd~~sG-----~~~--We~ilg~RiE~sa~v-----vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSG-----NLI--WEAILGVRIECSAIV-----VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI 91 (354)
T ss_pred eEEEEecCCceEEEecCCCC-----cEE--eehhhCceeeeeeEE-----ECCEEEEEEccCcEEEEEecchhheeeeee
Confidence 45778888999999999887 444 221 11111122222 245699999999999999999988777665
Q ss_pred cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceE-EEEEcC
Q 014154 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA-FSKVDI 172 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~-~~~~~~ 172 (430)
. +.+..-...+... +.+..++.||+....+.... -.+|...-++.+. +-++.|
T Consensus 92 ~---------~~vk~~a~~d~~~-------glIycgshd~~~yalD~~~~----------~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 92 L---------ETVKVRAQCDFDG-------GLIYCGSHDGNFYALDPKTY----------GCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred h---------hhhccceEEcCCC-------ceEEEecCCCcEEEeccccc----------ceEEecccCCceeccceecC
Confidence 2 1222222333333 67888888888887775432 2355544333332 334555
Q ss_pred CCCEEEEEeCCCeEEEEECCCC--eeeEeeCCCCCCCCCCcCCcceeEE-EEeecCCCCEEEEEeCCCcEEEEECCCCCc
Q 014154 173 SEKFSLFGGKGVEVNVWDLDKC--EKIWTAKPPPKNSLGIFTPTWFTSA-AFLSIDDHRKFVAGTNDHQVRLYDTSAQRR 249 (430)
Q Consensus 173 ~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 249 (430)
....|+.+...|.+..-+.++. ..++..... .++.+- .+ -+..+..++-||.+.-+| ..++.
T Consensus 146 g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~----------~PiF~splc----v~~sv~i~~VdG~l~~f~-~sG~q 210 (354)
T KOG4649|consen 146 GDGSLYAAITAGAVLAVTKNPYSSTEFWAATRF----------GPIFASPLC----VGSSVIITTVDGVLTSFD-ESGRQ 210 (354)
T ss_pred CCceEEEEeccceEEEEccCCCCcceehhhhcC----------CccccCcee----ccceEEEEEeccEEEEEc-CCCcE
Confidence 4556666777777666655543 222222111 111110 01 133445555666666666 23332
Q ss_pred ceEEEeecCCCeEE-EEec-CCCCEEEEEeCCCcEE--------EEEccCCeEEeeeeCCCCCCeEEEEecC-C---CCe
Q 014154 250 PVMSFDFRETPIKA-VAEE-PDSFNIYIGNGSGDLA--------SVDIRTGKLLGCFIGKCSGSIRSIARHP-T---LPI 315 (430)
Q Consensus 250 ~~~~~~~~~~~i~~-~~~s-p~~~~l~~~~~d~~i~--------iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~---~~~ 315 (430)
+..+. ..++|.. -+.+ |..+.|..+..+..+. +|..++|.....+... -..++++. . .++
T Consensus 211 -vwr~~-t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p----~l~F~~h~~~~S~~~l 284 (354)
T KOG4649|consen 211 -VWRPA-TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSP----KLRFDLHSPGISYPKL 284 (354)
T ss_pred -EEeec-CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCc----ccceeccCCCCcchhh
Confidence 22221 1233321 1122 4445555555544333 4444444333222211 01222221 1 246
Q ss_pred EEEEeCCCcEEEEEC---------CCCceee--EEEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154 316 IASCGLDSYLRFWDI---------KTRQLLS--AVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 316 l~s~~~dg~i~iwd~---------~~~~~~~--~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~ 376 (430)
|..++.||.+.|--+ +.+++.. .+.+.+ .|++--.--+|+++.+..|..++-|+.+.
T Consensus 285 l~~~s~dgkv~il~~~~sl~~~~s~~g~lq~~~~~el~~----eIFsSPvii~grl~igcRDdYv~cldl~~ 352 (354)
T KOG4649|consen 285 LRRSSGDGKVMILMTSKSLAEISSNGGELQNLEAIELSN----EIFSSPVIIDGRLLIGCRDDYVRCLDLDT 352 (354)
T ss_pred hhhhcCCCcEEEEEecccccccccCCCccceEEEeecCc----ccccCCeEEccEEEEEEccCeEEEEeccc
Confidence 777889998888733 2232221 111211 11111111258889999999999999865
No 323
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.47 E-value=0.00029 Score=65.09 Aligned_cols=73 Identities=26% Similarity=0.335 Sum_probs=62.0
Q ss_pred CcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC
Q 014154 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (430)
Q Consensus 213 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 290 (430)
+..|.++++ +|+...|+.|+.||+|.+||...+ +..+....-..+.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 259 ~s~v~~ca~--sp~E~kLvlGC~DgSiiLyD~~~~---~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 259 PSQVICCAR--SPSEDKLVLGCEDGSIILYDTTRG---VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CCcceEEec--CcccceEEEEecCCeEEEEEcCCC---eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 467899999 899999999999999999999864 2333344567789999999999999999999999998643
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.44 E-value=0.00023 Score=70.98 Aligned_cols=209 Identities=14% Similarity=0.106 Sum_probs=126.9
Q ss_pred CCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEe
Q 014154 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG 181 (430)
Q Consensus 102 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~ 181 (430)
+++.|.++.+..... .++.++..|.+.+.+..... +.+-. .....|.+++|+|++..++..+
T Consensus 67 gd~~i~s~~fl~d~~--------~i~v~~~~G~iilvd~et~~---------~eivg-~vd~GI~aaswS~Dee~l~liT 128 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTN--------SICVITALGDIILVDPETLE---------LEIVG-NVDNGISAASWSPDEELLALIT 128 (1265)
T ss_pred CCcceEEEEEecccc--------eEEEEecCCcEEEEcccccc---------eeeee-eccCceEEEeecCCCcEEEEEe
Confidence 446888888876654 67777888888777554322 11111 1246799999999999999999
Q ss_pred CCCeEEEEECC----C-------------------CeeeEeeCCCCCC------------CCCCcCCcceeEEEEeecCC
Q 014154 182 KGVEVNVWDLD----K-------------------CEKIWTAKPPPKN------------SLGIFTPTWFTSAAFLSIDD 226 (430)
Q Consensus 182 ~d~~i~~~d~~----~-------------------~~~~~~~~~~~~~------------~~~~~~~~~v~~~~~~~~~~ 226 (430)
..+++.+-+-. . |+....+.+..+. .......+.=+.+.| --|
T Consensus 129 ~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsW--RgD 206 (1265)
T KOG1920|consen 129 GRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISW--RGD 206 (1265)
T ss_pred CCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEE--ccC
Confidence 88887765431 0 0100111110000 000001122345788 678
Q ss_pred CCEEEEEe----CC-CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe---CCCcEEEEEccCCeE----Ee
Q 014154 227 HRKFVAGT----ND-HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN---GSGDLASVDIRTGKL----LG 294 (430)
Q Consensus 227 ~~~l~s~~----~d-g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~---~d~~i~iwd~~~~~~----~~ 294 (430)
|.++++.. .+ ..|++||-. +.. -..-....+.-.+++|-|.|.++++-. .|+.|.+|.- +|-. ..
T Consensus 207 g~~fAVs~~~~~~~~RkirV~drE-g~L-ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l 283 (1265)
T KOG1920|consen 207 GEYFAVSFVESETGTRKIRVYDRE-GAL-NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVL 283 (1265)
T ss_pred CcEEEEEEEeccCCceeEEEeccc-chh-hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCcccccccc
Confidence 88888732 23 789999977 221 111111123346899999999988764 4567888874 3332 22
Q ss_pred eeeCCCCCCeEEEEecCCCCeEEE---EeCCCcEEEEECCCCc
Q 014154 295 CFIGKCSGSIRSIARHPTLPIIAS---CGLDSYLRFWDIKTRQ 334 (430)
Q Consensus 295 ~~~~~~~~~v~~i~~~~~~~~l~s---~~~dg~i~iwd~~~~~ 334 (430)
.+... ..+|..++|+.++..|++ ......|++|-+.+..
T Consensus 284 ~~p~d-e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 284 PFPLD-EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CCccc-ccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 23332 345999999999999887 5555569999987644
No 325
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.41 E-value=0.00021 Score=61.81 Aligned_cols=184 Identities=17% Similarity=0.142 Sum_probs=116.8
Q ss_pred EEEcCCCCEEEEEe-----CCCeEEEEECC-CCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-------
Q 014154 168 SKVDISEKFSLFGG-----KGVEVNVWDLD-KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT------- 234 (430)
Q Consensus 168 ~~~~~~~~~l~~~~-----~d~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~------- 234 (430)
-.|+++|++|++.- ..|.|-|||.. +.+.+.++..+... ...+.+ .||+..|+++.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIG---------PHel~l--~pDG~tLvVANGGI~Thp 124 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIG---------PHELLL--MPDGETLVVANGGIETHP 124 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcC---------hhhEEE--cCCCCEEEEEcCCCccCc
Confidence 47899999998743 35789999998 66777777665422 334556 68887777653
Q ss_pred -----------CCCcEEEEECCCCCcceEE--E--eecCCCeEEEEecCCCCEEEEEeCCCc-------EEEEEccCCeE
Q 014154 235 -----------NDHQVRLYDTSAQRRPVMS--F--DFRETPIKAVAEEPDSFNIYIGNGSGD-------LASVDIRTGKL 292 (430)
Q Consensus 235 -----------~dg~i~iwd~~~~~~~~~~--~--~~~~~~i~~~~~sp~~~~l~~~~~d~~-------i~iwd~~~~~~ 292 (430)
.+.++.+.|..++.. +.. + ..|...|..+++.++|..++..-..|. |-+++. ++.
T Consensus 125 d~GR~kLNl~tM~psL~~ld~~sG~l-l~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~ 201 (305)
T PF07433_consen 125 DSGRAKLNLDTMQPSLVYLDARSGAL-LEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGA 201 (305)
T ss_pred ccCceecChhhcCCceEEEecCCCce-eeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCc
Confidence 233455556666552 333 3 336678999999999866665543332 334432 222
Q ss_pred EeeeeCC------CCCCeEEEEecCCCCeEEEE-eCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCC
Q 014154 293 LGCFIGK------CSGSIRSIARHPTLPIIASC-GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAAD 365 (430)
Q Consensus 293 ~~~~~~~------~~~~v~~i~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~ 365 (430)
+..+... ....+-+|++++++.++++. -.-+.+.+||..+++.+....+.. +..++-.+++ ++.++.
T Consensus 202 ~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D-----~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 202 LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD-----ACGVAPTDDG-FLVSSG 275 (305)
T ss_pred ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc-----eeeeeecCCc-eEEeCC
Confidence 2222211 14678999999999877554 466789999999999998753321 3566666666 544444
Q ss_pred CCceEe
Q 014154 366 APMLEI 371 (430)
Q Consensus 366 d~~i~~ 371 (430)
.|.+..
T Consensus 276 ~G~~~~ 281 (305)
T PF07433_consen 276 QGQLIR 281 (305)
T ss_pred CccEEE
Confidence 444433
No 326
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.41 E-value=0.00055 Score=65.48 Aligned_cols=282 Identities=13% Similarity=0.079 Sum_probs=152.7
Q ss_pred eeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceE--EEEEeecCcccccccCceEEEEccCCeeEEEEeeecC
Q 014154 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIV--GLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~ 144 (430)
.++.++.++.|.-.|..+|+.+..+....... .....+. .+.++. . +.++.++.++.+..++.....
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~--~~~~~~~~~g~~~~~--~-------~~V~v~~~~g~v~AlD~~TG~ 131 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPAD--RGCCDVVNRGVAYWD--P-------RKVFFGTFDGRLVALDAETGK 131 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCcc--ccccccccCCcEEcc--C-------CeEEEecCCCeEEEEECCCCC
Confidence 47778888999999999999887765421100 0000000 011111 0 366667777766666644332
Q ss_pred ccccCCCcceEEeeecCCCce---EEEEEcC--CCCEEEEEe---------CCCeEEEEECCCCeeeEeeCCCCCCCCCC
Q 014154 145 VSAESSCSTVKSWNVCASGTI---AFSKVDI--SEKFSLFGG---------KGVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (430)
Q Consensus 145 ~~~~~~~~~i~~~~~~~~~~i---~~~~~~~--~~~~l~~~~---------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 210 (430)
.+|.......+ ..+.-+| .+..++.++ .++.+..+|..+++.++............
T Consensus 132 ----------~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~ 201 (488)
T cd00216 132 ----------QVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAF 201 (488)
T ss_pred ----------EeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCC
Confidence 24444332221 0011111 234555554 36789999999999999876532211111
Q ss_pred cCC-----------cce-eEEEEeecCCCCEEEEEeCCC------------------cEEEEECCCCCcceEEEee--cC
Q 014154 211 FTP-----------TWF-TSAAFLSIDDHRKFVAGTNDH------------------QVRLYDTSAQRRPVMSFDF--RE 258 (430)
Q Consensus 211 ~~~-----------~~v-~~~~~~~~~~~~~l~s~~~dg------------------~i~iwd~~~~~~~~~~~~~--~~ 258 (430)
... ..+ ...++ .+.+.+++.++.++ .|.-+|..+++. +-.++. |.
T Consensus 202 ~~~~~~~~~~~~~g~~vw~~pa~--d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~-~W~~~~~~~~ 278 (488)
T cd00216 202 PTWGPDRQMWGPGGGTSWASPTY--DPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV-KWFYQTTPHD 278 (488)
T ss_pred CCCCCCcceecCCCCCccCCeeE--eCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE-EEEeeCCCCC
Confidence 000 001 12233 34456777777665 788999998775 333321 11
Q ss_pred C----CeEEEEec----CCCC---EEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEE--------
Q 014154 259 T----PIKAVAEE----PDSF---NIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC-------- 319 (430)
Q Consensus 259 ~----~i~~~~~s----p~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-------- 319 (430)
. ......+. -++. .+++++.+|.+...|.++|+.+...... ...+..+| ..++.+
T Consensus 279 ~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~vyv~~~~~~~~~ 352 (488)
T cd00216 279 LWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLVYLGAFHIPLGL 352 (488)
T ss_pred CcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceEEEccccccccC
Confidence 0 00001111 1232 6788889999999999999998776531 11233444 223222
Q ss_pred ----------eCCCcEEEEECCCCceeeEEEeecccc-----ceE--EeeeccccccccccCCCCceEecCCCCCcc
Q 014154 320 ----------GLDSYLRFWDIKTRQLLSAVFLKQHLN-----EVV--FDSAFADKEVANAAADAPMLEIQNGNDTQE 379 (430)
Q Consensus 320 ----------~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~v--~~~~~s~~g~~~~~~~d~~i~~~~~~~~~~ 379 (430)
..+|.|.-.|+.+|+.+.......+.. ... ..+.. ..+.+++++.||.|+.++....+.
T Consensus 353 ~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~-~g~~v~~g~~dG~l~ald~~tG~~ 428 (488)
T cd00216 353 PPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT-AGNLVFAGAADGYFRAFDATTGKE 428 (488)
T ss_pred cccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe-cCCeEEEECCCCeEEEEECCCCce
Confidence 246789999999999988764431110 000 01111 123346778899999999876543
No 327
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=9.6e-05 Score=70.82 Aligned_cols=206 Identities=15% Similarity=0.189 Sum_probs=127.6
Q ss_pred EEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCC----
Q 014154 109 LHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV---- 184 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---- 184 (430)
+..+.... +.++.++.+|.+.+.+-.+. .++-|.......|..+....+.++|++.+.|+
T Consensus 28 isc~~s~~-------~~vvigt~~G~V~~Ln~s~~---------~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np 91 (933)
T KOG2114|consen 28 ISCCSSST-------GSVVIGTADGRVVILNSSFQ---------LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNP 91 (933)
T ss_pred eeEEcCCC-------ceEEEeeccccEEEecccce---------eeehheecchhhhhHhhcccCceEEEEEeecCCCCc
Confidence 45555554 78899999998887764332 22334432223244444444456777766654
Q ss_pred -eEEEEECCCC------eeeE--eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC--CCcc-eE
Q 014154 185 -EVNVWDLDKC------EKIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA--QRRP-VM 252 (430)
Q Consensus 185 -~i~~~d~~~~------~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~-~~ 252 (430)
.|++|+++.. .++. .+..+... ..+.++.+++. +.+-..+|+|-.+|.|..+.-.- .+-. ..
T Consensus 92 ~llkiw~lek~~~n~sP~c~~~~ri~~~~np----~~~~p~s~l~V--s~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~ 165 (933)
T KOG2114|consen 92 VLLKIWDLEKVDKNNSPQCLYEHRIFTIKNP----TNPSPASSLAV--SEDLKTIVCGFTNGLVICYKGDILRDRGSRQD 165 (933)
T ss_pred eEEEEecccccCCCCCcceeeeeeeeccCCC----CCCCcceEEEE--EccccEEEEEecCcEEEEEcCcchhcccccee
Confidence 4899999642 2221 11111100 12366778888 67788999999999999885321 1111 11
Q ss_pred EEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE-EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 253 ~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
.......+|+.+++..++..++-......|.+|.+....+ ...+..| ...+.|..|++....+++++. ..|.+|+..
T Consensus 166 ~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~-G~~lnCss~~~~t~qfIca~~-e~l~fY~sd 243 (933)
T KOG2114|consen 166 YSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNN-GISLNCSSFSDGTYQFICAGS-EFLYFYDSD 243 (933)
T ss_pred eeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccC-CccceeeecCCCCccEEEecC-ceEEEEcCC
Confidence 2222357999999988887733333456799999974443 3335555 889999999886665666654 459999987
Q ss_pred CCceeeE
Q 014154 332 TRQLLSA 338 (430)
Q Consensus 332 ~~~~~~~ 338 (430)
...+-..
T Consensus 244 ~~~~cfa 250 (933)
T KOG2114|consen 244 GRGPCFA 250 (933)
T ss_pred Ccceeee
Confidence 6555554
No 328
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.38 E-value=3.2e-07 Score=87.29 Aligned_cols=156 Identities=17% Similarity=0.151 Sum_probs=111.5
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC--c
Q 014154 161 ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--Q 238 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~ 238 (430)
+....+|++|+...++|++|+..|.|++|++.+|........|. +.|+.+.- +.+|..+++.+... .
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~---------SavT~veP--s~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQ---------SAVTLVEP--SVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccc---------cccccccc--cCCcceeeeeccccCch
Confidence 44678999999999999999999999999999999888888776 66776666 77888776655443 4
Q ss_pred EEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC---CCCCeEEEEecCCCCe
Q 014154 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK---CSGSIRSIARHPTLPI 315 (430)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~i~~~~~~~~ 315 (430)
..+|++..-..+.+.+.. -.++.|+.....-+.|+....+.+||+.++.++.++-.. ....-+.+.|+|+..+
T Consensus 1169 saLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 679999864445555543 467888876666677777778999999999877663321 0122356678887766
Q ss_pred EEEEeCCCcEEEEECCCCcee
Q 014154 316 IASCGLDSYLRFWDIKTRQLL 336 (430)
Q Consensus 316 l~s~~~dg~i~iwd~~~~~~~ 336 (430)
++ .|| .+||++..+.+
T Consensus 1245 Il---ndG--vLWDvR~~~aI 1260 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPEAI 1260 (1516)
T ss_pred Ee---eCc--eeeeeccHHHH
Confidence 55 344 25666544433
No 329
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.34 E-value=0.00027 Score=60.07 Aligned_cols=198 Identities=8% Similarity=0.076 Sum_probs=115.5
Q ss_pred CceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE
Q 014154 163 GTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (430)
Q Consensus 163 ~~i~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 241 (430)
..+..++|+|+.+ ++++....+.|..++. +|+.+..+.... ....-.+++ -.++.++++.-.++.+.+
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g--------~~D~EgI~y--~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG--------FGDYEGITY--LGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS---------SSEEEEEE---STTEEEEEETTTTEEEE
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC--------CCCceeEEE--ECCCEEEEEEcCCCcEEE
Confidence 4599999999755 5556667788888887 477777665432 144677888 456666666556889999
Q ss_pred EECCCCCcc-----eEEEe-----ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC---CeEEeee-----e--CCCC
Q 014154 242 YDTSAQRRP-----VMSFD-----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT---GKLLGCF-----I--GKCS 301 (430)
Q Consensus 242 wd~~~~~~~-----~~~~~-----~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~---~~~~~~~-----~--~~~~ 301 (430)
+++...... ...+. .++..+-.++|+|.++.|+++-+..-..+|.+.. ...+... . ....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence 988432211 11122 1345688999999988888887777777777653 1111111 1 1113
Q ss_pred CCeEEEEecCCC-CeEEEEeCCCcEEEEECCCCceeeEEEeecccc------ceEEeeeccccccccccCCCCceEec
Q 014154 302 GSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLN------EVVFDSAFADKEVANAAADAPMLEIQ 372 (430)
Q Consensus 302 ~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~v~~~~~s~~g~~~~~~~d~~i~~~ 372 (430)
..+.++.++|.. .+++....+..|.++| .+|+.+..+.+..... ...-.++|.++|.+..++..+.+++|
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 467899999964 5667777888899999 6788888776654211 12468999999998666667766655
No 330
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.33 E-value=5e-05 Score=75.39 Aligned_cols=199 Identities=14% Similarity=0.080 Sum_probs=129.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 242 (430)
..|.++.|..+.+.++.+...|.|.+.|.++......-.. ...|.+++| +||+..++..+..+++.+-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v----------d~GI~aasw--S~Dee~l~liT~~~tll~m 136 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV----------DNGISAASW--SPDEELLALITGRQTLLFM 136 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec----------cCceEEEee--cCCCcEEEEEeCCcEEEEE
Confidence 5788899999999999999999999998877544322111 155899999 9999999998888877654
Q ss_pred EC----CCCCc------------------ceEEEeecC---------------------CCeEEEEecCCCCEEEEEe--
Q 014154 243 DT----SAQRR------------------PVMSFDFRE---------------------TPIKAVAEEPDSFNIYIGN-- 277 (430)
Q Consensus 243 d~----~~~~~------------------~~~~~~~~~---------------------~~i~~~~~sp~~~~l~~~~-- 277 (430)
+- -..+. .-..|.+.. ..=++|.|--||.++++..
T Consensus 137 T~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~ 216 (1265)
T KOG1920|consen 137 TKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVE 216 (1265)
T ss_pred eccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEe
Confidence 32 11000 001121110 1123588999999999843
Q ss_pred ---CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe---CCCcEEEEECCCCceeeEEEeeccccce-EE
Q 014154 278 ---GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG---LDSYLRFWDIKTRQLLSAVFLKQHLNEV-VF 350 (430)
Q Consensus 278 ---~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~-v~ 350 (430)
....|++||-. |.+-..-... .+.=.+++|-|.|..+++-. .|+.|.+|.-+ |-.-..+.++-..+.. +.
T Consensus 217 ~~~~~RkirV~drE-g~Lns~se~~-~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve 293 (1265)
T KOG1920|consen 217 SETGTRKIRVYDRE-GALNSTSEPV-EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVE 293 (1265)
T ss_pred ccCCceeEEEeccc-chhhcccCcc-cccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchh
Confidence 33789999976 5432222221 33446789999999888763 55679999853 4433333333333333 79
Q ss_pred eeecccccccccc---CCC-CceEecCCCC
Q 014154 351 DSAFADKEVANAA---ADA-PMLEIQNGND 376 (430)
Q Consensus 351 ~~~~s~~g~~~~~---~~d-~~i~~~~~~~ 376 (430)
.++|+.++.++++ ... ..|++|....
T Consensus 294 ~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 294 ELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred eeeecCCCCceeeeecccccceEEEEEecC
Confidence 9999999998333 334 4499997654
No 331
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.27 E-value=4.2e-05 Score=70.45 Aligned_cols=73 Identities=19% Similarity=0.199 Sum_probs=62.0
Q ss_pred cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154 257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 257 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~ 332 (430)
..+.+.|++++|+...|+.|+.||.|.+||...+.-... .. .-.++.++|||+|.++++|+..|.+.+||+.-
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka-~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KA-EFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--ee-cccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 457899999999999999999999999999876643322 22 44678999999999999999999999999853
No 332
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.25 E-value=0.00075 Score=61.91 Aligned_cols=212 Identities=14% Similarity=0.061 Sum_probs=113.8
Q ss_pred ceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee---cCCC--
Q 014154 153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS---IDDH-- 227 (430)
Q Consensus 153 ~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~-- 227 (430)
++.+.+.. .+.|++++.+ +-.++++|..+|.+.|.|++....++...... ..........++++.|.. ..|+
T Consensus 78 P~~l~~~~-~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 78 PLTLLDAK-QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-SFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp EEEEE----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG---T-SS----EEEEEEEEEE-TTSSSE
T ss_pred chhheecc-CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc-cccccccccCeeEEEEEEEecCCCccc
Confidence 44455544 7899999997 67799999999999999998888776632211 111122235688888852 2233
Q ss_pred -CEEEEEeCCCcEEEEECCC--CCcc----eEEEeecCCCeEEEE-ecCC-----------------C---CEEEEEeCC
Q 014154 228 -RKFVAGTNDHQVRLYDTSA--QRRP----VMSFDFRETPIKAVA-EEPD-----------------S---FNIYIGNGS 279 (430)
Q Consensus 228 -~~l~s~~~dg~i~iwd~~~--~~~~----~~~~~~~~~~i~~~~-~sp~-----------------~---~~l~~~~~d 279 (430)
-++++|+..|.+.+|.+.- +... ......+.++|..|. |+.+ + +-+++...+
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe 234 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE 234 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence 4788999999999998752 1111 111123445555544 3211 0 223444457
Q ss_pred CcEEEEEccCCeEEeeeeCCCCCCeEEEEec-----CCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccc-cceEEeee
Q 014154 280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARH-----PTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHL-NEVVFDSA 353 (430)
Q Consensus 280 ~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~-----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~ 353 (430)
..++++...+.+..+..... ......+.+- ..+..|++-..+|.|++|.+..-+.+..+.+.... ...+....
T Consensus 235 ~~irv~~~~~~k~~~K~~~~-~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDD-PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS--EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred cceEEEeCCCCcccceeecc-ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 78999999888876655532 2233344442 34567888889999999999998888876553211 12234566
Q ss_pred ccccccccccCCCCc
Q 014154 354 FADKEVANAAADAPM 368 (430)
Q Consensus 354 ~s~~g~~~~~~~d~~ 368 (430)
++++|..+.-.....
T Consensus 314 is~~Gdi~~~~gpsE 328 (395)
T PF08596_consen 314 ISRNGDIFYWTGPSE 328 (395)
T ss_dssp E-TTS-EEEE-SSSE
T ss_pred ECCCCCEEEEeCccc
Confidence 778888743333334
No 333
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.16 E-value=0.00073 Score=59.21 Aligned_cols=246 Identities=15% Similarity=0.150 Sum_probs=134.0
Q ss_pred eecCCCceEEEEccCCCCCcceeeeecCCCCC-------CcceeeeeecCCCCCceeEEe--ecCCeEEEecCCCCcccc
Q 014154 19 TFDSLGLIKVIEARGEHGGVPKVVERWGDPHS-------SNCVLAASIDDSQNDPLLAVA--RKNGLTDILNPLNGDLRV 89 (430)
Q Consensus 19 t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~p~g~~l~~g--~~dg~i~iwd~~~~~~~~ 89 (430)
=|.....|.+||..+. .......-+.. ....+++ +.||+++++- +-.-.|.|.|+...+.+.
T Consensus 62 rG~RtDvv~~~D~~TL-----~~~~EI~iP~k~R~~~~~~~~~~~l----s~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 62 RGERTDVVEIWDTQTL-----SPTGEIEIPPKPRAQVVPYKNMFAL----SADGKFLYVQNFTPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp EEEEEEEEEEEETTTT-----EEEEEEEETTS-B--BS--GGGEEE-----TTSSEEEEEEESSSEEEEEEETTTTEEEE
T ss_pred cccceeEEEEEecCcC-----cccceEecCCcchheecccccceEE----ccCCcEEEEEccCCCCeEEEEECCCCceee
Confidence 3556668899999885 33332221111 1112222 5567777763 444668888988888777
Q ss_pred eeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEE
Q 014154 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK 169 (430)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~ 169 (430)
++..- .. ..+++..+ ..+.+.+.||.+.-..+....... ...-.+|+.........-+
T Consensus 133 ei~~P----------GC--~~iyP~~~-------~~F~~lC~DGsl~~v~Ld~~Gk~~---~~~t~~F~~~~dp~f~~~~ 190 (342)
T PF06433_consen 133 EIDTP----------GC--WLIYPSGN-------RGFSMLCGDGSLLTVTLDADGKEA---QKSTKVFDPDDDPLFEHPA 190 (342)
T ss_dssp EEEGT----------SE--EEEEEEET-------TEEEEEETTSCEEEEEETSTSSEE---EEEEEESSTTTS-B-S--E
T ss_pred eecCC----------CE--EEEEecCC-------CceEEEecCCceEEEEECCCCCEe---EeeccccCCCCcccccccc
Confidence 76541 22 34445433 467778888888777776332211 0112344443333333445
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeEe--eCCCC-CCCCCCcCCcceeEEEEeecCCCCEEEEEeC--------C--
Q 014154 170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWT--AKPPP-KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN--------D-- 236 (430)
Q Consensus 170 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--------d-- 236 (430)
+...+..++.-+.+|.|+-.|+........ ..... .+...-.-++.-.-+++ ++..++|++--. |
T Consensus 191 ~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~--~~~~~rlyvLMh~g~~gsHKdpg 268 (342)
T PF06433_consen 191 YSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAY--HAASGRLYVLMHQGGEGSHKDPG 268 (342)
T ss_dssp EETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEE--ETTTTEEEEEEEE--TT-TTS-E
T ss_pred eECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeee--ccccCeEEEEecCCCCCCccCCc
Confidence 555666777789999999998875443211 11100 00000011122344666 444444443211 1
Q ss_pred CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCC-EEEEEe-CCCcEEEEEccCCeEEeeeeCC
Q 014154 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIGN-GSGDLASVDIRTGKLLGCFIGK 299 (430)
Q Consensus 237 g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~-~l~~~~-~d~~i~iwd~~~~~~~~~~~~~ 299 (430)
..|.++|+.+.++ +..+... .++.+|..+.+.+ +|++.+ .++.|.+||..+|+.+.++..-
T Consensus 269 teVWv~D~~t~kr-v~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 269 TEVWVYDLKTHKR-VARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EEEEEEETTTTEE-EEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred eEEEEEECCCCeE-EEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 1488889998664 6666642 4678999998775 555544 5789999999999999888753
No 334
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.15 E-value=0.0031 Score=60.02 Aligned_cols=102 Identities=9% Similarity=-0.067 Sum_probs=68.1
Q ss_pred cceeEEEEeecCCCCEEEEEe-CCCcEEEEECCCCCc-----------ceEEEeecCCCeEEEEecCCCCEEEEEeCCCc
Q 014154 214 TWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRR-----------PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD 281 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~-----------~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~ 281 (430)
.....+.+ +|||+++++++ .+.+|.|+|+...+. .+...... ..-...+|.++|+...+-.-|..
T Consensus 321 KsPHGV~v--SPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG-lGPLHTaFDg~G~aytslf~dsq 397 (635)
T PRK02888 321 KNPHGVNT--SPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG-LGPLHTAFDGRGNAYTTLFLDSQ 397 (635)
T ss_pred CCccceEE--CCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC-CCcceEEECCCCCEEEeEeecce
Confidence 45677888 89999877765 488999999987442 12222222 23345789999988888889999
Q ss_pred EEEEEccC----------CeEEeeeeCCCCCCeEEEE------ecCCCCeEEEEe
Q 014154 282 LASVDIRT----------GKLLGCFIGKCSGSIRSIA------RHPTLPIIASCG 320 (430)
Q Consensus 282 i~iwd~~~----------~~~~~~~~~~~~~~v~~i~------~~~~~~~l~s~~ 320 (430)
|..||+.+ ...+..+..| -.+ -.+. -.|+|++|++..
T Consensus 398 v~kwn~~~a~~~~~g~~~~~v~~k~dV~-y~p-gh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 398 IVKWNIEAAIRAYKGEKVDPIVQKLDVH-YQP-GHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eEEEehHHHHHHhccccCCcceecccCC-Ccc-ceeeecCCCcCCCCCCEEEEcc
Confidence 99999876 3345545443 211 1122 257888888763
No 335
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.06 E-value=0.0006 Score=65.55 Aligned_cols=284 Identities=11% Similarity=0.039 Sum_probs=152.1
Q ss_pred eeecCCCCCceeEEee----cCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccC
Q 014154 57 ASIDDSQNDPLLAVAR----KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK 132 (430)
Q Consensus 57 ~~~~~~p~g~~l~~g~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (430)
.+| +|..+++|+++ ..|.|.||- .+|++...... | -..++++|.+. . -.++.+-.-
T Consensus 21 ~SW--HPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--P-------~hatSLCWHpe-~-------~vLa~gwe~ 80 (1416)
T KOG3617|consen 21 SSW--HPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY--P-------VHATSLCWHPE-E-------FVLAQGWEM 80 (1416)
T ss_pred ccc--CCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc--c-------eehhhhccChH-H-------HHHhhcccc
Confidence 345 88889998876 558899984 57775544332 0 02233444443 3 356667777
Q ss_pred CeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee----------------
Q 014154 133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---------------- 196 (430)
Q Consensus 133 g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---------------- 196 (430)
|.+.||.-... ........|..+|..+.|+++|+.++++..-|.|.+|.+..-..
T Consensus 81 g~~~v~~~~~~---------e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~lt 151 (1416)
T KOG3617|consen 81 GVSDVQKTNTT---------ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLT 151 (1416)
T ss_pred ceeEEEecCCc---------eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceee
Confidence 78888875422 22333446778999999999999999999999999998762111
Q ss_pred --eEeeCCCCCCCC------------CCc-CCcc-----eeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee
Q 014154 197 --IWTAKPPPKNSL------------GIF-TPTW-----FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF 256 (430)
Q Consensus 197 --~~~~~~~~~~~~------------~~~-~~~~-----v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 256 (430)
.+.+.....+.. .+. ...| -.+..-...|+|..++.++.+|+|+..|-.... ....+.
T Consensus 152 l~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g~~--~~V~k~ 229 (1416)
T KOG3617|consen 152 LWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNGRQ--RTVHKL 229 (1416)
T ss_pred EEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCCcE--EEEEEc
Confidence 111111100000 000 0000 011111124677888888999999888865422 222222
Q ss_pred cCCCeEEEEecCCCCEEEEEeCCCcEEEEEcc-CC---------------eE---------Eee------eeCCCCCCeE
Q 014154 257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIR-TG---------------KL---------LGC------FIGKCSGSIR 305 (430)
Q Consensus 257 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~-~~---------------~~---------~~~------~~~~~~~~v~ 305 (430)
. +. ..+-|.+-...+++-..+-++.++-.. +| .. ... +-......++
T Consensus 230 d-S~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~ 307 (1416)
T KOG3617|consen 230 D-SE-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGIL 307 (1416)
T ss_pred c-ch-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceE
Confidence 1 11 112222222222222222222222110 00 00 000 1001145799
Q ss_pred EEEecCCCCeEEEEeCCCcEEEEECCCC----ce-eeEEEeec--cccceEEeeeccccccccccCCCCceEecC
Q 014154 306 SIARHPTLPIIASCGLDSYLRFWDIKTR----QL-LSAVFLKQ--HLNEVVFDSAFADKEVANAAADAPMLEIQN 373 (430)
Q Consensus 306 ~i~~~~~~~~l~s~~~dg~i~iwd~~~~----~~-~~~~~~~~--~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~ 373 (430)
+++++..+..|..|...|.+.+|--... .+ +..+.+.+ .....|..+.|.|--..+.......+.+..
T Consensus 308 c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~v~ll~ 382 (1416)
T KOG3617|consen 308 CMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEEDVVLLG 382 (1416)
T ss_pred EEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhhheeeec
Confidence 9999999999999999999999953221 12 22222332 234457889999866654444444444443
No 336
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.05 E-value=0.016 Score=57.20 Aligned_cols=330 Identities=13% Similarity=0.030 Sum_probs=176.2
Q ss_pred CCCcccCCCCCCCcceeeecCCCceEEEEccCCCCCcceeee--ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEE
Q 014154 2 PRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVE--RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDI 79 (430)
Q Consensus 2 ~~~~~~~~~~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~i 79 (430)
||..-+++..-....|+++..||.+.-+-+..+. +...-.+ .++ ..++....|+. . .++.+++.+. .-..+
T Consensus 583 PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~t-g~lsd~Kk~~lG--t~P~~Lr~f~s--k-~~t~vfa~sd-rP~vi 655 (1096)
T KOG1897|consen 583 PRSILLTTFEGDIHYLLVALGDGALLYFVLDINT-GQLSDRKKVTLG--TQPISLRTFSS--K-SRTAVFALSD-RPTVI 655 (1096)
T ss_pred chheeeEEeeccceEEEEEcCCceEEEEEEEccc-ceEccccccccC--CCCcEEEEEee--C-CceEEEEeCC-CCEEE
Confidence 5666666655556678889999999877665531 1111111 222 23433444443 1 2234444433 33333
Q ss_pred ecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeee
Q 014154 80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV 159 (430)
Q Consensus 80 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~ 159 (430)
|.. ++++..+--.. ..+..++-++.... ...++...++.+.+..++.-+ .+.+-.+
T Consensus 656 Y~~-n~kLv~spls~---------kev~~~c~f~s~a~------~d~l~~~~~~~l~i~tid~iq--------kl~irtv 711 (1096)
T KOG1897|consen 656 YSS-NGKLVYSPLSL---------KEVNHMCPFNSDAY------PDSLASANGGALTIGTIDEIQ--------KLHIRTV 711 (1096)
T ss_pred Eec-CCcEEEeccch---------HHhhhhcccccccC------CceEEEecCCceEEEEecchh--------hcceeee
Confidence 432 34332211100 01111222222111 122333344555555554221 2222223
Q ss_pred cCCCceEEEEEcCCCCEEEEEeC-----------C---CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154 160 CASGTIAFSKVDISEKFSLFGGK-----------G---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 160 ~~~~~i~~~~~~~~~~~l~~~~~-----------d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
.-+.....+++.+....+++.+. . ..++++|-++-+.+...+....+. ...+.++.|. .
T Consensus 712 pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~-----~~Si~s~~~~--~ 784 (1096)
T KOG1897|consen 712 PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNET-----ALSIISCKFT--D 784 (1096)
T ss_pred cCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccce-----eeeeeeeeec--C
Confidence 33455556666654433333221 1 136777777665554433322111 1346666784 3
Q ss_pred C-CCEEEEEeC----------CCcEEEEECCCCCcceEEEeec--CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE
Q 014154 226 D-HRKFVAGTN----------DHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (430)
Q Consensus 226 ~-~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 292 (430)
| +.++++|+. .|.|.+|.+....+ +.....+ .+.+.++.. -+|++||. -...|++|+..+.+.
T Consensus 785 d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~-L~~v~e~~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~e 860 (1096)
T KOG1897|consen 785 DPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS-LELVAETVVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERE 860 (1096)
T ss_pred CCceEEEEEEEeeccCCCCcccceEEEEEEecCCc-eeeeeeeeeccceeehhh-hCCeEEEe--cCcEEEEEEccccce
Confidence 4 667777753 57788887776332 3333222 345555543 25655543 466899999988877
Q ss_pred EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC--CCceeeEEEeeccccceEEeeeccccccccccCCCCceE
Q 014154 293 LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK--TRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLE 370 (430)
Q Consensus 293 ~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~ 370 (430)
++.-..+ ..++..+...-.+..++.|..-+.+.+--.+ .|..... -+.-.....+++.+-.+..++.+..+|.+.
T Consensus 861 Lr~e~~~-~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ev--ArD~~p~Wmtaveil~~d~ylgae~~gNlf 937 (1096)
T KOG1897|consen 861 LRIECNI-SNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEV--ARDYNPNWMTAVEILDDDTYLGAENSGNLF 937 (1096)
T ss_pred ehhhhcc-cCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEe--ehhhCccceeeEEEecCceEEeecccccEE
Confidence 7666666 7788999998899999999887777665544 3334433 222335567788888788888888888888
Q ss_pred ecCCCC
Q 014154 371 IQNGND 376 (430)
Q Consensus 371 ~~~~~~ 376 (430)
+-..+.
T Consensus 938 ~v~~d~ 943 (1096)
T KOG1897|consen 938 TVRKDS 943 (1096)
T ss_pred EEEecC
Confidence 877664
No 337
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.02 E-value=0.00023 Score=69.89 Aligned_cols=145 Identities=16% Similarity=0.114 Sum_probs=96.9
Q ss_pred CEEEEE-eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee---cCCCCEEEEEeCCCcEEEEECCCCCcc
Q 014154 175 KFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS---IDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (430)
Q Consensus 175 ~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~ 250 (430)
++|+.- .....|+-.|++.|+.+.+...+... .|..++-.. .-.....+.|-.+..+..||++-....
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~--------~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k 565 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI--------PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK 565 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCc--------ceeEecccccccccCCCceEEEECCCceEEeccCCCCCc
Confidence 344433 34578999999999999888776421 122222100 002345677888999999999964322
Q ss_pred eEEEee----cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEE
Q 014154 251 VMSFDF----RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLR 326 (430)
Q Consensus 251 ~~~~~~----~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~ 326 (430)
+..-.. .....+|++-+.+| +||+|+.+|.||+||--..+....+.+- ..+|..|..+.||++|+..+ +..|.
T Consensus 566 ~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~l-G~pI~~iDvt~DGkwilaTc-~tyLl 642 (794)
T PF08553_consen 566 LVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGL-GDPIIGIDVTADGKWILATC-KTYLL 642 (794)
T ss_pred eeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCC-CCCeeEEEecCCCcEEEEee-cceEE
Confidence 222122 23456788877776 8999999999999994333333445565 78999999999999987665 45677
Q ss_pred EEEC
Q 014154 327 FWDI 330 (430)
Q Consensus 327 iwd~ 330 (430)
++++
T Consensus 643 Li~t 646 (794)
T PF08553_consen 643 LIDT 646 (794)
T ss_pred EEEE
Confidence 7775
No 338
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.91 E-value=0.0051 Score=55.55 Aligned_cols=183 Identities=11% Similarity=0.096 Sum_probs=105.6
Q ss_pred CCEEEEEeC---------C-CeEEEEECCCC----eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcE
Q 014154 174 EKFSLFGGK---------G-VEVNVWDLDKC----EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (430)
Q Consensus 174 ~~~l~~~~~---------d-~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 239 (430)
..+|++|+. . |.|.+|++... ..+..+.... ..+.|++++-. ++. |+++ ..+.|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~-------~~g~V~ai~~~---~~~-lv~~-~g~~l 109 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE-------VKGPVTAICSF---NGR-LVVA-VGNKL 109 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE-------ESS-EEEEEEE---TTE-EEEE-ETTEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe-------ecCcceEhhhh---CCE-EEEe-ecCEE
Confidence 567777664 2 88999999874 1222111111 12668888773 444 4443 45899
Q ss_pred EEEECCCCCcceEEEeec--CCCeEEEEecCCCCEEEEEeCCCcEEEEEccC-CeEEeeee-CCCCCCeEEEEecCCCCe
Q 014154 240 RLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFI-GKCSGSIRSIARHPTLPI 315 (430)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~-~~~~~~v~~i~~~~~~~~ 315 (430)
.+|++...+. +.....+ ...+.++... +++|++|..-..+.++..+. .+.+..+. ......++++.|-+++..
T Consensus 110 ~v~~l~~~~~-l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~ 186 (321)
T PF03178_consen 110 YVYDLDNSKT-LLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDT 186 (321)
T ss_dssp EEEEEETTSS-EEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSE
T ss_pred EEEEccCccc-chhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcE
Confidence 9999987652 2222222 2355665554 56999999888888875443 33222222 222456889999877778
Q ss_pred EEEEeCCCcEEEEECCC-------Cc-eeeEEEeeccccceEEee---ecccc--c-------cccccCCCCceEec
Q 014154 316 IASCGLDSYLRFWDIKT-------RQ-LLSAVFLKQHLNEVVFDS---AFADK--E-------VANAAADAPMLEIQ 372 (430)
Q Consensus 316 l~s~~~dg~i~iwd~~~-------~~-~~~~~~~~~~~~~~v~~~---~~s~~--g-------~~~~~~~d~~i~~~ 372 (430)
++.+..+|.|.++.... +. .+... ..-|.+..++++ ++.|. + .++.++.+|.|.+.
T Consensus 187 ~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~-~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 187 IIVGDKDGNLFVLRYNPEIPNSRDGDPKLERI-SSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEETTSEEEEEEE-SS-SSTTTTTTBEEEE-EEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEcCCCeEEEEEECCCCcccccccccceeE-EEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 99999999999998762 22 22221 223455666766 55552 1 14778888988854
No 339
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.91 E-value=3.7e-06 Score=77.54 Aligned_cols=188 Identities=15% Similarity=0.166 Sum_probs=117.1
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEEe----CCCeEEEEECCCCee--
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGG----KGVEVNVWDLDKCEK-- 196 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~----~d~~i~~~d~~~~~~-- 196 (430)
..+.+|..+|.+.+..+....+ .-..+...+....++++|++ +.+.||.|- .|..+.|||+.++-.
T Consensus 71 cIlavG~atG~I~l~s~r~~hd-------Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvP 143 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHD-------SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVP 143 (783)
T ss_pred hhhhhccccCceEEeecCCccc-------ccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCC
Confidence 3566677778887777654432 11222334456788999988 556676653 256799999987521
Q ss_pred --eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecC-CCCEE
Q 014154 197 --IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNI 273 (430)
Q Consensus 197 --~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l 273 (430)
...+... ......+++| -.+..++++|.....++++|++... .......+..+..+...| .++++
T Consensus 144 ke~~~fs~~--------~l~gqns~cw--lrd~klvlaGm~sr~~~ifdlRqs~--~~~~svnTk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 144 KESPLFSSS--------TLDGQNSVCW--LRDTKLVLAGMTSRSVHIFDLRQSL--DSVSSVNTKYVQGITVDPFSPNYF 211 (783)
T ss_pred ccccccccc--------cccCcccccc--ccCcchhhcccccchhhhhhhhhhh--hhhhhhhhhhcccceecCCCCCce
Confidence 1111110 1133457777 5778889999999999999999422 222222334567777888 66677
Q ss_pred EEEeCCCcEEEEE-ccCCeE-EeeeeCC---CCCCeEEEEecCCCC-eEEEEeC-CCcEEEEECC
Q 014154 274 YIGNGSGDLASVD-IRTGKL-LGCFIGK---CSGSIRSIARHPTLP-IIASCGL-DSYLRFWDIK 331 (430)
Q Consensus 274 ~~~~~d~~i~iwd-~~~~~~-~~~~~~~---~~~~v~~i~~~~~~~-~l~s~~~-dg~i~iwd~~ 331 (430)
++- .||.|.+|| .++-+- +..+... ....+..++|+|... .+++.+. .++|+++|+.
T Consensus 212 cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 212 CSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 665 499999999 444332 2222211 023489999999542 4555554 4789999885
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.89 E-value=0.022 Score=53.29 Aligned_cols=217 Identities=10% Similarity=0.023 Sum_probs=111.7
Q ss_pred eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC
Q 014154 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 133 (430)
...+++ +|+|+++++ ..+|.-.|+.....+.... + .-....|.. . +.+++....+
T Consensus 35 p~~ls~--npngr~v~V-~g~geY~iyt~~~~r~k~~--G-----------~g~~~vw~~-~--------n~yAv~~~~~ 89 (443)
T PF04053_consen 35 PQSLSH--NPNGRFVLV-CGDGEYEIYTALAWRNKAF--G-----------SGLSFVWSS-R--------NRYAVLESSS 89 (443)
T ss_dssp -SEEEE---TTSSEEEE-EETTEEEEEETTTTEEEEE--E-----------E-SEEEE-T-S--------SEEEEE-TTS
T ss_pred CeeEEE--CCCCCEEEE-EcCCEEEEEEccCCccccc--C-----------ceeEEEEec-C--------ccEEEEECCC
Confidence 456666 889998888 5678888887433322111 1 111233333 2 4666666677
Q ss_pred eeEEEE-eeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcC
Q 014154 134 KASMRS-IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212 (430)
Q Consensus 134 ~~~v~~-~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 212 (430)
.+.|+. +... .++...+. ..+..+-. |.+|+..+.+ .|.+||+++++.+.++..
T Consensus 90 ~I~I~kn~~~~---------~~k~i~~~--~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v---------- 144 (443)
T PF04053_consen 90 TIKIYKNFKNE---------VVKSIKLP--FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV---------- 144 (443)
T ss_dssp -EEEEETTEE----------TT-----S--S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----------
T ss_pred eEEEEEcCccc---------cceEEcCC--cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec----------
Confidence 777753 2211 11112211 12222222 7777766655 899999999999999876
Q ss_pred CcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC----------CcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcE
Q 014154 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ----------RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL 282 (430)
Q Consensus 213 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i 282 (430)
..|..+.| ++++.+++..+.+ .+.+++.... +..+..+..-...|.+..|..+ .++-.+.. .|
T Consensus 145 -~~vk~V~W--s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~l 217 (443)
T PF04053_consen 145 -SAVKYVIW--SDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HL 217 (443)
T ss_dssp --E-EEEEE---TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EE
T ss_pred -CCCcEEEE--ECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eE
Confidence 34789999 8999999988755 6777765532 0023444332467888888765 33333333 55
Q ss_pred EEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154 283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 283 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
+. +..|+.- .+..- ..+++-+...|....+.....|+.|..+.+.
T Consensus 218 kY--l~~Ge~~-~i~~l-d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 218 KY--LVNGETG-IIAHL-DKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EE--EETTEEE-EEEE--SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EE--EEcCCcc-eEEEc-CCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 55 4455532 22221 4567777777877788888888888888765
No 341
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=8.6e-05 Score=68.76 Aligned_cols=94 Identities=11% Similarity=0.104 Sum_probs=78.1
Q ss_pred cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeE-EEEecCCCCEEEEEeCCCcEEEEEccCCeE
Q 014154 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIK-AVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~-~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 292 (430)
..+.-+.| +|.-.+||++..+|.|.+..++. + .+.++..|...++ +++|.|||++|++|-.||+|++.|..++..
T Consensus 21 ~~i~~~ew--nP~~dLiA~~t~~gelli~R~n~-q-Rlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEW--NPKMDLIATRTEKGELLIHRLNW-Q-RLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEE--cCccchhheeccCCcEEEEEecc-c-eeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 44677888 88889999999999999999984 3 3778887777777 999999999999999999999999999988
Q ss_pred EeeeeCCCCCCeEEEEecC
Q 014154 293 LGCFIGKCSGSIRSIARHP 311 (430)
Q Consensus 293 ~~~~~~~~~~~v~~i~~~~ 311 (430)
+..+.......|.++.|.+
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 7763322256788888864
No 342
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.87 E-value=0.0016 Score=47.04 Aligned_cols=90 Identities=10% Similarity=0.128 Sum_probs=66.9
Q ss_pred ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc
Q 014154 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~ 145 (430)
+.|++|+.|..|+||+- ...+.++... +.+..+.-... +.++.+..+|++-+|+-
T Consensus 16 ~eLlvGs~D~~IRvf~~--~e~~~Ei~e~---------~~v~~L~~~~~---------~~F~Y~l~NGTVGvY~~----- 70 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKG--DEIVAEITET---------DKVTSLCSLGG---------GRFAYALANGTVGVYDR----- 70 (111)
T ss_pred ceEEEecCCcEEEEEeC--CcEEEEEecc---------cceEEEEEcCC---------CEEEEEecCCEEEEEeC-----
Confidence 57999999999999973 4555555432 45555544433 58999999999999963
Q ss_pred cccCCCcceEEeeecCCCceEEEEEcC-C--C-CEEEEEeCCCeEE
Q 014154 146 SAESSCSTVKSWNVCASGTIAFSKVDI-S--E-KFSLFGGKGVEVN 187 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~-~--~-~~l~~~~~d~~i~ 187 (430)
..++|+......+.++.+.. + | ..|++|-.+|.|-
T Consensus 71 -------~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 -------SQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -------cceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 78899999888888887754 2 2 3688888888764
No 343
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.86 E-value=9.7e-05 Score=69.29 Aligned_cols=109 Identities=7% Similarity=0.005 Sum_probs=85.3
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE---E--eeeeC
Q 014154 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL---L--GCFIG 298 (430)
Q Consensus 224 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~---~--~~~~~ 298 (430)
+..+.+++.|+.-|.+++|+-..+........+..+.+..+..|++..++|+|+..|.|.++-+....+ . ..+..
T Consensus 42 dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~ 121 (726)
T KOG3621|consen 42 DATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDK 121 (726)
T ss_pred ecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccc
Confidence 457889999999999999998876543334444556677778899999999999999999998876432 1 12222
Q ss_pred CCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154 299 KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 299 ~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~ 332 (430)
.|...|++++|++++..+++|...|.|..-.+.+
T Consensus 122 ~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 122 SHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 2378999999999999999999999998887766
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.85 E-value=0.0011 Score=61.68 Aligned_cols=140 Identities=10% Similarity=0.057 Sum_probs=81.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE-
Q 014154 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY- 242 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw- 242 (430)
....+.++|+++++++ +.+|.-.+|.....+.... +.....+| .++ +.+|+-...+.|.++
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~--------------G~g~~~vw--~~~-n~yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF--------------GSGLSFVW--SSR-NRYAVLESSSTIKIYK 95 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE--------------EE-SEEEE---TS-SEEEEE-TTS-EEEEE
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc--------------CceeEEEE--ecC-ccEEEEECCCeEEEEE
Confidence 4678999999999998 5566888887443333222 23455677 454 456666678889996
Q ss_pred ECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCC
Q 014154 243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD 322 (430)
Q Consensus 243 d~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d 322 (430)
++.. . ....+... ..+..|-. |.+|+..+.+ .|.+||..+++.+.++... +|..+.|++++.+++..+.+
T Consensus 96 n~~~-~-~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 96 NFKN-E-VVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp TTEE---TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S-
T ss_pred cCcc-c-cceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECCCCEEEEEeCC
Confidence 3332 2 12233322 23444432 7777777554 8999999999999999853 48999999999999988766
Q ss_pred CcEEEEECCC
Q 014154 323 SYLRFWDIKT 332 (430)
Q Consensus 323 g~i~iwd~~~ 332 (430)
.+.|++...
T Consensus 166 -~i~il~~~~ 174 (443)
T PF04053_consen 166 -SIYILKYNL 174 (443)
T ss_dssp -SEEEEEE-H
T ss_pred -eEEEEEecc
Confidence 588877543
No 345
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.0014 Score=60.82 Aligned_cols=178 Identities=12% Similarity=0.049 Sum_probs=108.3
Q ss_pred CceEEEEEcCCCCEEEEEe---CC-CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-CCC
Q 014154 163 GTIAFSKVDISEKFSLFGG---KG-VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDH 237 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~---~d-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg 237 (430)
..+..-+|+|++..++... .. ..++++++++++....+... ..-...+| +|||+.|+.+. .||
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~----------g~~~~P~f--spDG~~l~f~~~rdg 260 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN----------GNNGAPAF--SPDGSKLAFSSSRDG 260 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC----------CccCCccC--CCCCCEEEEEECCCC
Confidence 4456667888887765442 22 46899999887665444321 12233466 89998776554 555
Q ss_pred c--EEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC-CC--cEEEEEccCCeEEeeeeCCCCCCeEEEEecCC
Q 014154 238 Q--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 238 ~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~ 312 (430)
. |.++|+.... ...+....+.-..-.|+|||++|+-.+. .| .|.++|+..+... .+... ...-..-.|+||
T Consensus 261 ~~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~-~~~~~~p~~Spd 336 (425)
T COG0823 261 SPDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFS-GGGNSNPVWSPD 336 (425)
T ss_pred CccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-Eeecc-CCCCcCccCCCC
Confidence 4 6677777644 3334443344446789999998876653 34 3777777666552 22222 122226789999
Q ss_pred CCeEEEEeCC-Cc--EEEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154 313 LPIIASCGLD-SY--LRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 313 ~~~l~s~~~d-g~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 360 (430)
|++|+..+.. |. |.+.|+.++..+..+. . ........|.++|..
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt---~-~~~~e~ps~~~ng~~ 383 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGKIRILT---S-TYLNESPSWAPNGRM 383 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCcEEEcc---c-cccCCCCCcCCCCce
Confidence 9998887743 43 6777776666444321 1 222346678888877
No 346
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.0018 Score=56.98 Aligned_cols=245 Identities=11% Similarity=0.050 Sum_probs=123.0
Q ss_pred CCCCCcceeeeeecCCCCCc-eeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCce
Q 014154 47 DPHSSNCVLAASIDDSQNDP-LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (430)
Q Consensus 47 ~~~~~~~~~~~~~~~~p~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 125 (430)
.+...+.-++|+. ..+ +|..++.+..|+|.|+++......+..+ ..+.+ ..|+.+.. ..
T Consensus 191 ~~g~~IrdlafSp----~~~GLl~~asl~nkiki~dlet~~~vssy~a~---------~~~wS-C~wDlde~------h~ 250 (463)
T KOG1645|consen 191 GEGSFIRDLAFSP----FNEGLLGLASLGNKIKIMDLETSCVVSSYIAY---------NQIWS-CCWDLDER------HV 250 (463)
T ss_pred ccchhhhhhccCc----cccceeeeeccCceEEEEecccceeeeheecc---------CCcee-eeeccCCc------ce
Confidence 3444544455544 333 6778999999999999888777666543 34443 34554432 48
Q ss_pred EEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEE------EcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154 126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK------VDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 126 ~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~------~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 199 (430)
+.+|...|.+.|+++..........-.. ....+|..++ ..+.+.+|+....+ +..|.+.-...
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~------~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~--- 319 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELVAN------VTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAE--- 319 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhhhh------hccCcceeecccCccccccccceEEeeehh--hhhhhhhcccc---
Confidence 8999999999999998765411100000 0112222222 22345555544433 44555432111
Q ss_pred eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC-C------cEEE-EECCCCCcceE-EEeec-CC------CeEE
Q 014154 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-H------QVRL-YDTSAQRRPVM-SFDFR-ET------PIKA 263 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g------~i~i-wd~~~~~~~~~-~~~~~-~~------~i~~ 263 (430)
+......+..++...++.+ .+..+.++..... . .|-. -|...+. ++. .-..+ .+ .-..
T Consensus 320 ---~~p~vlele~pG~cismqy--~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~-pVc~~r~~~~Gs~~~kl~t~~a 393 (463)
T KOG1645|consen 320 ---CLPCVLELEPPGICISMQY--HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGF-PVCGKRRTYFGSKQTKLSTTQA 393 (463)
T ss_pred ---CCCcccccCCCcceeeeee--cCccceEEEEecCCCCCccceeeeeeeccccCc-eeeeecccccCCcccccccccc
Confidence 0011111111234445555 3333333322221 0 0111 1111111 111 11111 00 0011
Q ss_pred EEecCCCCEEE-EEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecC-CC-CeEEEEeCCCcEEEEECC
Q 014154 264 VAEEPDSFNIY-IGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP-TL-PIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 264 ~~~sp~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~-~~l~s~~~dg~i~iwd~~ 331 (430)
+.-.++.++|+ +|...+.+.+||..+++.++++.. ..+|..++... ++ .+|++-. |..++||..+
T Consensus 394 i~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~--~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 394 IRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLAL--SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred eeccccccEEEEecCCcceeEEeccchhheeeeccc--CcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 21234455554 444558899999999999999987 47888877654 33 4666554 5568888654
No 347
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.0097 Score=54.98 Aligned_cols=194 Identities=14% Similarity=0.102 Sum_probs=130.5
Q ss_pred eEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC---CCcEE
Q 014154 165 IAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---DHQVR 240 (430)
Q Consensus 165 i~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~ 240 (430)
-..+++++.++.++. ...++.|.+.|..+.......... .....+++ ++++..+.++.. ++.+.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG----------~~P~~~~~--~~~~~~vYV~n~~~~~~~vs 143 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG----------LGPVGLAV--DPDGKYVYVANAGNGNNTVS 143 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec----------cCCceEEE--CCCCCEEEEEecccCCceEE
Confidence 346677777775554 444589999997776665554432 13566788 888877776665 68899
Q ss_pred EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeEEe-e----eeCCCCCCeEEEEecCCCC
Q 014154 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLG-C----FIGKCSGSIRSIARHPTLP 314 (430)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~-~----~~~~~~~~v~~i~~~~~~~ 314 (430)
+.|..+... .........+ ..++++|+|+.++... .++.|.+.|........ . +.. ......+.++|++.
T Consensus 144 vid~~t~~~-~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~--~~~P~~i~v~~~g~ 219 (381)
T COG3391 144 VIDAATNKV-TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV--GTGPAGIAVDPDGN 219 (381)
T ss_pred EEeCCCCeE-EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc--CCCCceEEECCCCC
Confidence 999888654 4444443345 8899999999777665 78999999987666553 1 222 23457789999998
Q ss_pred eEEEEeCC---CcEEEEECCCCceeeEEEeeccccceEEeeeccccccc--cccCCCCceEecCCCC
Q 014154 315 IIASCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGND 376 (430)
Q Consensus 315 ~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~ 376 (430)
++...... +.+...|..++.........+. . ....+.++|+|.. +.-...+.+.+-+...
T Consensus 220 ~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~-~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 220 RVYVANDGSGSNNVLKIDTATGNVTATDLPVGS-G-APRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred EEEEEeccCCCceEEEEeCCCceEEEecccccc-C-CCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 76655433 5899999998887765212222 1 2367899999998 3334446666665544
No 348
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.76 E-value=0.0065 Score=54.84 Aligned_cols=179 Identities=15% Similarity=0.097 Sum_probs=104.4
Q ss_pred eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee-cC----CCCEEEEEeC----------CCcEEEEECCCC-C
Q 014154 185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS-ID----DHRKFVAGTN----------DHQVRLYDTSAQ-R 248 (430)
Q Consensus 185 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~----~~~~l~s~~~----------dg~i~iwd~~~~-~ 248 (430)
.|++.|..+.+.+..+.-... ..+.+++... .. ...+|++|+. .|.|.++++... .
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~--------E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~ 74 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPN--------EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE 74 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETT--------EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS--
T ss_pred EEEEEeCCCCeEEEEEECCCC--------ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc
Confidence 567777766655544433221 2344333321 21 2457776653 288999999873 1
Q ss_pred --cceEEE--eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe-EEeeeeCCCCCCeEEEEecCCCCeEEEEeCCC
Q 014154 249 --RPVMSF--DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIASCGLDS 323 (430)
Q Consensus 249 --~~~~~~--~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg 323 (430)
..+..+ ....++|++++-- ++ +|+++. .+.|.+|++...+ ....-.-+....+.++... +.+++.|....
T Consensus 75 ~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~ 149 (321)
T PF03178_consen 75 NNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMK 149 (321)
T ss_dssp ---EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSS
T ss_pred cceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEccc
Confidence 112211 2346789998765 34 455554 5889999998877 4433332213466666654 56899998888
Q ss_pred cEEEEECCC-CceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154 324 YLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 324 ~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~ 377 (430)
.+.++..+. ...+..+ -.......++++.|-+++.. +.+..+|.+.++..++.
T Consensus 150 sv~~~~~~~~~~~l~~v-a~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 150 SVSLLRYDEENNKLILV-ARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp SEEEEEEETTTE-EEEE-EEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred CEEEEEEEccCCEEEEE-EecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence 888875543 2323332 22233455788888866644 88999999999988753
No 349
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00019 Score=66.50 Aligned_cols=93 Identities=15% Similarity=0.128 Sum_probs=75.6
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeE-EEEecCCCCeEEEEeCCCcEEEEECCCCceee
Q 014154 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR-SIARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337 (430)
Q Consensus 259 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 337 (430)
..|.-+.|+|.-.+||.+..+|.|.++-+. .+.+.++.-+ ...++ +++|.|||+.|+.|-.||+|++.|+.++..+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p-~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIP-GENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCC-CCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 467889999999999999999999999987 7778888865 55666 99999999999999999999999999998887
Q ss_pred EEEeeccccceEEeeecc
Q 014154 338 AVFLKQHLNEVVFDSAFA 355 (430)
Q Consensus 338 ~~~~~~~~~~~v~~~~~s 355 (430)
.+. -.....|..+-|+
T Consensus 99 ~~~--~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFL--FSVETDISKGIWD 114 (665)
T ss_pred ccc--cccccchheeecc
Confidence 631 1223334555564
No 350
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00043 Score=65.11 Aligned_cols=117 Identities=13% Similarity=0.218 Sum_probs=85.3
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 242 (430)
..+.--+++..+.+++.|+.-|.+++|+-..+..... +.... ...+..+.. +++..++|.|+..|.|.++
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-~~~~~-------~~~~~~~~v--s~~e~lvAagt~~g~V~v~ 103 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-KNEGA-------TGITCVRSV--SSVEYLVAAGTASGRVSVF 103 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcc-cccCc-------cceEEEEEe--cchhHhhhhhcCCceEEee
Confidence 4455556677899999999999999999876554322 22110 022333444 7888899999999999999
Q ss_pred ECCCCCcceEEE-----eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC
Q 014154 243 DTSAQRRPVMSF-----DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (430)
Q Consensus 243 d~~~~~~~~~~~-----~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 289 (430)
-++....+-..+ ..|...|++++|++++..+++|...|.|.+-.+..
T Consensus 104 ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 104 QLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 888643322221 12567899999999999999999999999887765
No 351
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.70 E-value=0.0074 Score=50.97 Aligned_cols=106 Identities=16% Similarity=0.142 Sum_probs=74.4
Q ss_pred CceEEEEEcCC-CCEEEEEeCCCe-EEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC----
Q 014154 163 GTIAFSKVDIS-EKFSLFGGKGVE-VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---- 236 (430)
Q Consensus 163 ~~i~~~~~~~~-~~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---- 236 (430)
.....++++|. ..-++.+-.-|+ ..++|....+....+...... ...-.-.| +|+|.+|...-.|
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~R-------HfyGHGvf--s~dG~~LYATEndfd~~ 138 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGR-------HFYGHGVF--SPDGRLLYATENDFDPN 138 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCc-------eeeccccc--CCCCcEEEeecCCCCCC
Confidence 44566888884 455666666665 568898887766655543322 11223456 8999988875443
Q ss_pred -CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe
Q 014154 237 -HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (430)
Q Consensus 237 -g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 277 (430)
|.|-|||.+..-..+-.+..|.-.-..+.+.+||+.++.+.
T Consensus 139 rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 139 RGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 67999999976655677888877788899999999998774
No 352
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.70 E-value=1.1e-05 Score=74.65 Aligned_cols=200 Identities=15% Similarity=0.141 Sum_probs=125.3
Q ss_pred CceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeee-EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe----C
Q 014154 163 GTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKI-WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT----N 235 (430)
Q Consensus 163 ~~i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----~ 235 (430)
+.+.|+++.- +...+++|..+|.|.+-.++...-. +++. ..+..+.++++|. .-|.+.||.|- .
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~t--------p~~ar~Ct~lAwn-eLDtn~LAagldkhrn 127 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVT--------PGYARPCTSLAWN-ELDTNHLAAGLDKHRN 127 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceec--------ccccccccccccc-cccHHHHHhhhhhhcc
Confidence 5566776654 3457888999999999887643221 1211 1123668899994 33556777764 3
Q ss_pred CCcEEEEECCCCC-cceEE--Eee-cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE-EeeeeCCCCCCeEEEEec
Q 014154 236 DHQVRLYDTSAQR-RPVMS--FDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARH 310 (430)
Q Consensus 236 dg~i~iwd~~~~~-~~~~~--~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~ 310 (430)
|..+.|||+.+.- .|... +.. ......+++|-.+.+++++|.....+.++|+|.... ...+. +..+..+...
T Consensus 128 ds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn---Tk~vqG~tVd 204 (783)
T KOG1008|consen 128 DSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN---TKYVQGITVD 204 (783)
T ss_pred cCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh---hhhcccceec
Confidence 5679999998741 12111 111 234556888988889999999999999999984332 22222 3456777788
Q ss_pred C-CCCeEEEEeCCCcEEEEEC-CCC-ceeeEEEeecc--ccceEEeeecccc--ccc-cccCCCCceEecCCCC
Q 014154 311 P-TLPIIASCGLDSYLRFWDI-KTR-QLLSAVFLKQH--LNEVVFDSAFADK--EVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 311 ~-~~~~l~s~~~dg~i~iwd~-~~~-~~~~~~~~~~~--~~~~v~~~~~s~~--g~~-~~~~~d~~i~~~~~~~ 376 (430)
| .+.++++-. ||.|-+||. .+- .++..+ ++.. ....+..++|+|. |.+ +..-+.++|+.|+.-.
T Consensus 205 p~~~nY~cs~~-dg~iAiwD~~rnienpl~~i-~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 205 PFSPNYFCSNS-DGDIAIWDTYRNIENPLQII-LRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCCCceeccc-cCceeeccchhhhccHHHHH-hhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 8 667777665 999999994 221 122211 1111 1123688999995 444 4445667888888654
No 353
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.69 E-value=0.00015 Score=41.42 Aligned_cols=39 Identities=33% Similarity=0.623 Sum_probs=33.7
Q ss_pred CeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEE
Q 014154 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD 329 (430)
Q Consensus 290 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd 329 (430)
++++..+..| ...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGH-TGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEec-CCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3456667776 78999999999999999999999999996
No 354
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.69 E-value=0.042 Score=50.56 Aligned_cols=83 Identities=11% Similarity=0.170 Sum_probs=60.2
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCC-----------------CC-eEEEEe
Q 014154 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT-----------------LP-IIASCG 320 (430)
Q Consensus 259 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~-----------------~~-~l~s~~ 320 (430)
..+.+|+.+|++++.++...-|.|.++|+.++..++.++|...+.+.-+..... .. +++-+-
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 357789999999988888777999999999999888888763333222211111 11 244556
Q ss_pred CCCcEEEEECCCCceeeEEEe
Q 014154 321 LDSYLRFWDIKTRQLLSAVFL 341 (430)
Q Consensus 321 ~dg~i~iwd~~~~~~~~~~~~ 341 (430)
.-|.|.||.+++|..+..+..
T Consensus 388 rRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred cCCeEEEEecCCCCEEEEEEe
Confidence 789999999999999988643
No 355
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.67 E-value=7.5e-05 Score=60.56 Aligned_cols=106 Identities=18% Similarity=0.246 Sum_probs=66.7
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEE-EEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCC-C
Q 014154 225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS-G 302 (430)
Q Consensus 225 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~-~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~ 302 (430)
.-+..+++|+.+|.|.+|...........+......|.+ |.-..++.+..+++.||.|+.|++.-++.+...-.| . .
T Consensus 68 ~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h-~~~ 146 (238)
T KOG2444|consen 68 TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQH-NFE 146 (238)
T ss_pred ccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccc-cCC
Confidence 345679999999999999987432212222222223333 222345568889999999999999888887666555 4 4
Q ss_pred CeEEEEecCCCCeEEEE--eCCCcEEEEECC
Q 014154 303 SIRSIARHPTLPIIASC--GLDSYLRFWDIK 331 (430)
Q Consensus 303 ~v~~i~~~~~~~~l~s~--~~dg~i~iwd~~ 331 (430)
++..+..+..+++++++ |.|..++.|++.
T Consensus 147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 147 SGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred CcceeEEecCCceEEeeccccchhhhhcchh
Confidence 44444444455555555 555556666554
No 356
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.66 E-value=0.029 Score=47.90 Aligned_cols=168 Identities=11% Similarity=0.112 Sum_probs=90.0
Q ss_pred ceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee------eEeeCCCCCCCCCCcCCcceeEEEEeecCC
Q 014154 153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD 226 (430)
Q Consensus 153 ~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 226 (430)
.++.+.+..-+....+++..++.++++.-.++.+.++++..... ...+..... ..+...+-.++| ++.
T Consensus 55 vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~----~~~N~G~EGla~--D~~ 128 (248)
T PF06977_consen 55 VLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFP----NKGNKGFEGLAY--DPK 128 (248)
T ss_dssp EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S-------SS--EEEEE--ETT
T ss_pred EEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccc----cCCCcceEEEEE--cCC
Confidence 55666655556788899987777777665688999998843211 111111000 011245788999 787
Q ss_pred CCEEEEEeCCCcEEEEECCC--CCcceEEEe--------ecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeEEee
Q 014154 227 HRKFVAGTNDHQVRLYDTSA--QRRPVMSFD--------FRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGC 295 (430)
Q Consensus 227 ~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~--------~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~ 295 (430)
++.|+.+-+..-..+|.++. ....+.... .....+.+++++|.. ++++.+..+..|..+| .+|+.+..
T Consensus 129 ~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~ 207 (248)
T PF06977_consen 129 TNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSS 207 (248)
T ss_dssp TTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEE
T ss_pred CCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEE
Confidence 77777777776666776653 111111111 123457889999865 5666677788899999 68887665
Q ss_pred eeCC---C-----CCCeEEEEecCCCCeEEEEeCCCcEEEE
Q 014154 296 FIGK---C-----SGSIRSIARHPTLPIIASCGLDSYLRFW 328 (430)
Q Consensus 296 ~~~~---~-----~~~v~~i~~~~~~~~l~s~~~dg~i~iw 328 (430)
+.-. + -...-.|+|.++|.+.+ .++-+..++|
T Consensus 208 ~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 208 LSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp EE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred EEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 5432 0 13578899999996544 4566666655
No 357
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.66 E-value=0.011 Score=42.84 Aligned_cols=102 Identities=12% Similarity=0.140 Sum_probs=68.6
Q ss_pred eeEEEEee-cC-CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEE
Q 014154 216 FTSAAFLS-ID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL 293 (430)
Q Consensus 216 v~~~~~~~-~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~ 293 (430)
|+++++.. .. ..+.|++|+.|..|++|+-.. .+..+..+ ..|++++-... ..++.+..+|+|-+|+- .+.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---IVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---EEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeC--ccee
Confidence 45555531 12 225899999999999998653 45566544 57888877655 57888999999999975 3445
Q ss_pred eeeeCCCCCCeEEEEecC-C--C-CeEEEEeCCCcEE
Q 014154 294 GCFIGKCSGSIRSIARHP-T--L-PIIASCGLDSYLR 326 (430)
Q Consensus 294 ~~~~~~~~~~v~~i~~~~-~--~-~~l~s~~~dg~i~ 326 (430)
...+.. ..+.++++.. + | +-|++|-.+|.|-
T Consensus 75 WRiKSK--~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSK--NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccC--CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 556553 3466665543 3 2 3688888888764
No 358
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.0013 Score=63.36 Aligned_cols=109 Identities=15% Similarity=0.113 Sum_probs=82.5
Q ss_pred EEEEEcCCCCEEEEEeC----CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE
Q 014154 166 AFSKVDISEKFSLFGGK----GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 241 (430)
+-..|+|...++++++. .|.|.||- ++|++..... -+..+++++| +|..-.|+.|=.-|.+.+
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt----------~P~hatSLCW--Hpe~~vLa~gwe~g~~~v 85 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT----------YPVHATSLCW--HPEEFVLAQGWEMGVSDV 85 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc----------cceehhhhcc--ChHHHHHhhccccceeEE
Confidence 34578888888887763 56777773 4555332221 1245778999 788888999989999999
Q ss_pred EECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEcc
Q 014154 242 YDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (430)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 288 (430)
|...+.+. ......|..+|..+.||++|..++++..-|.|.+|...
T Consensus 86 ~~~~~~e~-htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 86 QKTNTTET-HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred EecCCcee-eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 99987442 34445689999999999999999999999999999765
No 359
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.063 Score=49.69 Aligned_cols=211 Identities=17% Similarity=0.101 Sum_probs=137.5
Q ss_pred eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEeeC
Q 014154 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK---GVEVNVWDLDKCEKIWTAK 201 (430)
Q Consensus 125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~ 201 (430)
.++.....+.+.+.+..... .+..- .-+.....++++++++.++++.. ++++.+.|-.+........
T Consensus 88 vyv~~~~~~~v~vid~~~~~--------~~~~~--~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~ 157 (381)
T COG3391 88 VYVTTGDSNTVSVIDTATNT--------VLGSI--PVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP 157 (381)
T ss_pred EEEecCCCCeEEEEcCcccc--------eeeEe--eeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence 44444455677777643221 11111 11235677899999988887765 6889999998888877643
Q ss_pred CCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-CCCcEEEEECCCCCcceE-----EEeecCCCeEEEEecCCCCEEEE
Q 014154 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPVM-----SFDFRETPIKAVAEEPDSFNIYI 275 (430)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~-----~~~~~~~~i~~~~~sp~~~~l~~ 275 (430)
... . ...+++ +|++..++.+. .++.|.+.|...... .. ....+ ..-..+.++|++.++++
T Consensus 158 vG~---------~-P~~~a~--~p~g~~vyv~~~~~~~v~vi~~~~~~v-~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV 223 (381)
T COG3391 158 VGN---------T-PTGVAV--DPDGNKVYVTNSDDNTVSVIDTSGNSV-VRGSVGSLVGVG-TGPAGIAVDPDGNRVYV 223 (381)
T ss_pred cCC---------C-cceEEE--CCCCCeEEEEecCCCeEEEEeCCCcce-eccccccccccC-CCCceEEECCCCCEEEE
Confidence 321 1 267788 89999666655 788999999776331 21 11111 23467889999997776
Q ss_pred EeCC---CcEEEEEccCCeEEee-eeCCCCCCeEEEEecCCCCeEEEEe-CCCcEEEEECCCCceeeEEEeeccccceEE
Q 014154 276 GNGS---GDLASVDIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVF 350 (430)
Q Consensus 276 ~~~d---~~i~iwd~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 350 (430)
.... +.+...|..++..... +..... ....+.++|+|.++.+.. ..+.+.+.|..+......+...........
T Consensus 224 ~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~ 302 (381)
T COG3391 224 ANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPV 302 (381)
T ss_pred EeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccce
Confidence 6544 5899999999887665 332212 467789999999888774 448899999998887776433223233345
Q ss_pred eeeccccccc
Q 014154 351 DSAFADKEVA 360 (430)
Q Consensus 351 ~~~~s~~g~~ 360 (430)
.+++.+....
T Consensus 303 ~~~~~~~~~~ 312 (381)
T COG3391 303 SIAISPLYDT 312 (381)
T ss_pred eccceeeccc
Confidence 6666665443
No 360
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.57 E-value=0.07 Score=49.80 Aligned_cols=166 Identities=13% Similarity=-0.012 Sum_probs=83.4
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 242 (430)
+.|.++.|..+. .|++...||.+++||+. |+..+.+.. ......+ ....+....+ ..+|-.++ ..++.+.+.
T Consensus 81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G~~~fsl~~-~i~~~~v-~e~~i~~~~~--~~~GivvL--t~~~~~~~v 152 (410)
T PF04841_consen 81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-GEFQFSLGE-EIEEEKV-LECRIFAIWF--YKNGIVVL--TGNNRFYVV 152 (410)
T ss_pred CCEEEEEECCCC-eEEEEEcCCEEEEEeCC-Cceeechhh-hccccCc-cccccccccc--CCCCEEEE--CCCCeEEEE
Confidence 789999998754 55567789999999986 333222111 1000000 0011222233 22442222 334444443
Q ss_pred ECCCCCcceEEE---ee-----cCC-CeEE-EEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCC
Q 014154 243 DTSAQRRPVMSF---DF-----RET-PIKA-VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 243 d~~~~~~~~~~~---~~-----~~~-~i~~-~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~ 312 (430)
.-.........+ .. +.. .... ..++.+....+....++.+.+.+-...+. +.. .+++..++.||+
T Consensus 153 ~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~~--~~~i~~iavSpn 227 (410)
T PF04841_consen 153 NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---IDS--DGPIIKIAVSPN 227 (410)
T ss_pred eCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---ccC--CCCeEEEEECCC
Confidence 222111001111 00 000 0000 22344444444444555555444322211 222 368999999999
Q ss_pred CCeEEEEeCCCcEEEEECCCCceeeEEEe
Q 014154 313 LPIIASCGLDSYLRFWDIKTRQLLSAVFL 341 (430)
Q Consensus 313 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 341 (430)
+++||.-..+|.+.|....-.+.+..+..
T Consensus 228 g~~iAl~t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 228 GKFIALFTDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred CCEEEEEECCCCEEEEECcccceeEEeec
Confidence 99999999999999988765566555433
No 361
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.52 E-value=0.08 Score=49.39 Aligned_cols=209 Identities=15% Similarity=0.056 Sum_probs=105.8
Q ss_pred eEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceE
Q 014154 76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVK 155 (430)
Q Consensus 76 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~ 155 (430)
.|.||+. .|+++..+.- .. +.+..+.|... ..++....+|.++++++.-....+ ....+.
T Consensus 62 ~I~iys~-sG~ll~~i~w------~~--~~iv~~~wt~~---------e~LvvV~~dG~v~vy~~~G~~~fs--l~~~i~ 121 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPW------DS--GRIVGMGWTDD---------EELVVVQSDGTVRVYDLFGEFQFS--LGEEIE 121 (410)
T ss_pred EEEEECC-CCCEeEEEEE------CC--CCEEEEEECCC---------CeEEEEEcCCEEEEEeCCCceeec--hhhhcc
Confidence 5899986 6777766543 11 57777777553 377788899999999863111000 000110
Q ss_pred EeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEeeCCCCCCCCCCcCCcceeE-EEEeecCCCCEEEEE
Q 014154 156 SWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTS-AAFLSIDDHRKFVAG 233 (430)
Q Consensus 156 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~s~ 233 (430)
...+ ....+....+..+|-.+ -..++.+.+.+--... ....+.................. ..+ +.+....+..
T Consensus 122 ~~~v-~e~~i~~~~~~~~Givv--Lt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l--~~~~~~~i~~ 196 (410)
T PF04841_consen 122 EEKV-LECRIFAIWFYKNGIVV--LTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL--SSDRVVEILL 196 (410)
T ss_pred ccCc-ccccccccccCCCCEEE--ECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEe--ecCcceEEEE
Confidence 0000 00112222233244223 3344444444322211 11111111000000000011111 122 3444555555
Q ss_pred eCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC
Q 014154 234 TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (430)
Q Consensus 234 ~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~ 313 (430)
..++.+.+.+-.... .+. ..+++..+++||++++|+.-..+|.+.+.+..-.+.+.++..........+.|.-+.
T Consensus 197 ~~g~~i~~i~~~~~~----~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 197 ANGETIYIIDENSFK----QID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred ecCCEEEEEEccccc----ccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 566666655443311 122 236899999999999999999999999998766666666654324566777776554
Q ss_pred C
Q 014154 314 P 314 (430)
Q Consensus 314 ~ 314 (430)
.
T Consensus 272 a 272 (410)
T PF04841_consen 272 A 272 (410)
T ss_pred c
Confidence 3
No 362
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.51 E-value=0.058 Score=47.49 Aligned_cols=232 Identities=14% Similarity=0.110 Sum_probs=123.5
Q ss_pred CCceeEEeecCCeEEEecCC-CCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeee
Q 014154 64 NDPLLAVARKNGLTDILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (430)
Q Consensus 64 ~g~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~ 142 (430)
.++.|+.|..+| |.+++.. .......... ..+..+.+.+... .++ ...|+.+.++++..
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~----------~~I~ql~vl~~~~--------~ll-vLsd~~l~~~~L~~ 65 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKL----------SSITQLSVLPELN--------LLL-VLSDGQLYVYDLDS 65 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeec----------ceEEEEEEecccC--------EEE-EEcCCccEEEEchh
Confidence 456799998888 8888883 2332222222 2477777766543 333 34558999998764
Q ss_pred cCccccCCC-----cceEEeeecCCCceEEEE--EcCCCCEEEEEeCCCeEEEEECCCC-----eeeEeeCCCCCCCCCC
Q 014154 143 TKVSAESSC-----STVKSWNVCASGTIAFSK--VDISEKFSLFGGKGVEVNVWDLDKC-----EKIWTAKPPPKNSLGI 210 (430)
Q Consensus 143 ~~~~~~~~~-----~~i~~~~~~~~~~i~~~~--~~~~~~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~~~~~ 210 (430)
-........ .............+...+ -...+...+.......|.+|.+... ....++..
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-------- 137 (275)
T PF00780_consen 66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-------- 137 (275)
T ss_pred hccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc--------
Confidence 332110000 000001112223344444 1223333344444558888887653 23333333
Q ss_pred cCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeec------------CCCeEEEEecCCCCEEEEEeC
Q 014154 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR------------ETPIKAVAEEPDSFNIYIGNG 278 (430)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------~~~i~~~~~sp~~~~l~~~~~ 278 (430)
+..+..++|. ++.|+.|..+ ...+.|+.++.. ...+... ..++..+.. +++.+|++-
T Consensus 138 --p~~~~~i~~~----~~~i~v~~~~-~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~-- 206 (275)
T PF00780_consen 138 --PDPPSSIAFL----GNKICVGTSK-GFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY-- 206 (275)
T ss_pred --CCCcEEEEEe----CCEEEEEeCC-ceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--
Confidence 2668889993 5677777644 578889986442 2222111 123333443 345566543
Q ss_pred CCcEEEEEccCCeEEe--eeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEE
Q 014154 279 SGDLASVDIRTGKLLG--CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVF 340 (430)
Q Consensus 279 d~~i~iwd~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 340 (430)
+..-.+.|. .|+... .+.= ...+..+++ ..++|+..+. +.|.||++.++++++.+.
T Consensus 207 ~~~g~fv~~-~G~~~r~~~i~W--~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 207 DNIGVFVNK-NGEPSRKSTIQW--SSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred cceEEEEcC-CCCcCcccEEEc--CCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 333344454 444332 2222 234556666 4457777765 459999999999999854
No 363
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.50 E-value=0.048 Score=46.42 Aligned_cols=191 Identities=13% Similarity=0.071 Sum_probs=118.9
Q ss_pred eEEeeecCCCceEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE
Q 014154 154 VKSWNVCASGTIAFSKVDISEKFSLFGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (430)
Q Consensus 154 i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 231 (430)
++.+......-...+.|..++.++-+.+.-| .|+.+|+.+++.......... ..-..++.. ++.+..
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~--------~FgEGit~~---~d~l~q 104 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR--------YFGEGITIL---GDKLYQ 104 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----------EEEEEEE---TTEEEE
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc--------ccceeEEEE---CCEEEE
Confidence 3444444455667888876777777777666 699999999987765544321 223445552 344444
Q ss_pred EEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC----CCCCeEEE
Q 014154 232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK----CSGSIRSI 307 (430)
Q Consensus 232 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~i 307 (430)
..=.++...+||..+.+ .+..+... +.-..++ .++..|+.+.....|+++|..+.+....+... .-..++-+
T Consensus 105 LTWk~~~~f~yd~~tl~-~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNEL 180 (264)
T PF05096_consen 105 LTWKEGTGFVYDPNTLK-KIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNEL 180 (264)
T ss_dssp EESSSSEEEEEETTTTE-EEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEE
T ss_pred EEecCCeEEEEccccce-EEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeE
Confidence 45678899999999854 46666543 4456666 46778888888889999999888777666532 12245667
Q ss_pred EecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeecc------------ccceEEeeeccccccc
Q 014154 308 ARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH------------LNEVVFDSAFADKEVA 360 (430)
Q Consensus 308 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------~~~~v~~~~~s~~g~~ 360 (430)
.|- +|.+.|-.=....|...|..+|+.+..+.+.+- ...+.+.+||.|....
T Consensus 181 E~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~ 244 (264)
T PF05096_consen 181 EYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR 244 (264)
T ss_dssp EEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE
T ss_pred EEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE
Confidence 775 666666555667788899999999887654321 1357899999887655
No 364
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.49 E-value=0.00039 Score=39.63 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=32.9
Q ss_pred ceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEE
Q 014154 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286 (430)
Q Consensus 250 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd 286 (430)
+...+..|...|.++.|++.+.++++++.|+.+++||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566777888999999999999999999999999996
No 365
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.49 E-value=0.0022 Score=63.21 Aligned_cols=142 Identities=14% Similarity=0.154 Sum_probs=99.6
Q ss_pred CCCEEEE-EeCCCcEEEEECCCCCcceEEEeecCCC-eEEEEecCC-------CCEEEEEeCCCcEEEEEccCCe--EEe
Q 014154 226 DHRKFVA-GTNDHQVRLYDTSAQRRPVMSFDFRETP-IKAVAEEPD-------SFNIYIGNGSGDLASVDIRTGK--LLG 294 (430)
Q Consensus 226 ~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~sp~-------~~~l~~~~~d~~i~iwd~~~~~--~~~ 294 (430)
+.++|+. ......|+-.|+..++ .+..+..|... |..++ |+ ....++|-.++.|..||.|-.. ++.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GK-VV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGK-VVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCc-EEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceEEeccCCCCCceee
Confidence 3344443 3356789999999876 58888887643 55543 43 2345678889999999998632 221
Q ss_pred ----eeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceE
Q 014154 295 ----CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLE 370 (430)
Q Consensus 295 ----~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~ 370 (430)
.+.. ....+|++-..+| +||.|+.+|.||+||- .|..-.+. +++- +..|.++..+.||+++.+..+..|.
T Consensus 569 ~~~k~Y~~--~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~-lp~l-G~pI~~iDvt~DGkwilaTc~tyLl 642 (794)
T PF08553_consen 569 SQSKQYSS--KNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTA-LPGL-GDPIIGIDVTADGKWILATCKTYLL 642 (794)
T ss_pred cccccccc--CCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhc-CCCC-CCCeeEEEecCCCcEEEEeecceEE
Confidence 1211 4467788877777 6899999999999994 44433332 4443 6678999999999998889999999
Q ss_pred ecCCCC
Q 014154 371 IQNGND 376 (430)
Q Consensus 371 ~~~~~~ 376 (430)
+++..-
T Consensus 643 Li~t~~ 648 (794)
T PF08553_consen 643 LIDTLI 648 (794)
T ss_pred EEEEee
Confidence 988643
No 366
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.49 E-value=0.0071 Score=56.22 Aligned_cols=143 Identities=14% Similarity=0.153 Sum_probs=86.1
Q ss_pred eeEEEEeecCCCCEEEEEe---CC-CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCc--EEEEEcc
Q 014154 216 FTSAAFLSIDDHRKFVAGT---ND-HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGD--LASVDIR 288 (430)
Q Consensus 216 v~~~~~~~~~~~~~l~s~~---~d-g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~--i~iwd~~ 288 (430)
+..-+| +|++..++... .. ..+.++|+.++..+. .+. -.+.-...+|+|||+.|+... .||. |+++|+.
T Consensus 195 ~~~p~w--s~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~-i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 195 ILTPAW--SPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV-ILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred eecccc--CcCCCceEEEEEecCCCceEEEEeccCCccce-eec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 444556 67777655442 22 468999999876532 222 223345678999998776554 4554 7777887
Q ss_pred CCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeC-CC--cEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccC
Q 014154 289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL-DS--YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAA 364 (430)
Q Consensus 289 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~ 364 (430)
.++... +... .+.-..-.|+|||++|+-.+. .| .|.+++...+.. ..+...+. .. ....|+|||++ +..+
T Consensus 271 ~~~~~~-Lt~~-~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~--~~-~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 271 GKNLPR-LTNG-FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGG--GN-SNPVWSPDGDKIVFES 344 (425)
T ss_pred CCccee-cccC-CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCC--CC-cCccCCCCCCEEEEEe
Confidence 776433 4432 333346689999998876653 34 466777766554 33323322 22 27899999998 4433
Q ss_pred -CCCc
Q 014154 365 -DAPM 368 (430)
Q Consensus 365 -~d~~ 368 (430)
.+|.
T Consensus 345 ~~~g~ 349 (425)
T COG0823 345 SSGGQ 349 (425)
T ss_pred ccCCc
Confidence 2454
No 367
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.00066 Score=67.00 Aligned_cols=101 Identities=20% Similarity=0.316 Sum_probs=74.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeE
Q 014154 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR 305 (430)
Q Consensus 226 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 305 (430)
.+..++.|+..|.|...|+...-.+...-..-.++|++++|+.+|.+++.|-.+|.|.+||+..++.++.+..+ ..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~-~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH-GAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec-CCccc
Confidence 35578899999999999988643332222223579999999999999999999999999999999988887765 55544
Q ss_pred EEE---ecCCCCeEEEEeCCCcEEEEE
Q 014154 306 SIA---RHPTLPIIASCGLDSYLRFWD 329 (430)
Q Consensus 306 ~i~---~~~~~~~l~s~~~dg~i~iwd 329 (430)
++- +..++..++++..-|. +|.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 443 3345556777766665 554
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.44 E-value=0.01 Score=57.74 Aligned_cols=149 Identities=13% Similarity=0.060 Sum_probs=87.2
Q ss_pred ceeEEEEeecCCCCEEEEEe------CCC--cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC-------
Q 014154 215 WFTSAAFLSIDDHRKFVAGT------NDH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS------- 279 (430)
Q Consensus 215 ~v~~~~~~~~~~~~~l~s~~------~dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d------- 279 (430)
.+...++ +|+++.++... .|. .|.+++... .......+ ...+.-.|+|+|..|++....
T Consensus 351 ~vsspai--SpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg--~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 351 NITSAAL--SRSGRQVAAVVTLGRGAPDPASSLWVGPLGG--VAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred CcccceE--CCCCCEEEEEEeecCCCCCcceEEEEEeCCC--cceeeecC--CCCCCceECCCCCceEEEecCcceEEEe
Confidence 4667778 89999887765 243 455556532 22222333 247889999998888777533
Q ss_pred -----CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEE---EECCCCce-e-eEEEeeccccceE
Q 014154 280 -----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF---WDIKTRQL-L-SAVFLKQHLNEVV 349 (430)
Q Consensus 280 -----~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~i---wd~~~~~~-~-~~~~~~~~~~~~v 349 (430)
+.+.+.++..+.... .. ...|..+.|||||..|+... ++.|++ -....|.. + ....+.......+
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~~-~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---RV-PGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTA 499 (591)
T ss_pred ccCCCceEEEEeccCchhhh---cc-CCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence 223323333332221 11 45799999999999887765 577777 45445541 1 1111222223335
Q ss_pred EeeeccccccccccCCCCceEecCC
Q 014154 350 FDSAFADKEVANAAADAPMLEIQNG 374 (430)
Q Consensus 350 ~~~~~s~~g~~~~~~~d~~i~~~~~ 374 (430)
.++.|.+++.++.+..++...+|..
T Consensus 500 ~~l~W~~~~~L~V~~~~~~~~v~~v 524 (591)
T PRK13616 500 VSLDWRTGDSLVVGRSDPEHPVWYV 524 (591)
T ss_pred ccceEecCCEEEEEecCCCCceEEE
Confidence 7899999999855444444445543
No 369
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0041 Score=56.98 Aligned_cols=143 Identities=16% Similarity=0.196 Sum_probs=95.8
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC-------CEEEEEeCCCcEEEEEC
Q 014154 173 SEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-------RKFVAGTNDHQVRLYDT 244 (430)
Q Consensus 173 ~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~l~s~~~dg~i~iwd~ 244 (430)
+.++|+ .+.....|+-.|++.|+.+.+...+.. |+-+.+ .|+. ..-+.|-.+..|.-||+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d----------i~mv~~--t~d~K~~Ql~~e~TlvGLs~n~vfriDp 411 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD----------INMVDI--TPDFKFAQLTSEQTLVGLSDNSVFRIDP 411 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC----------cceeec--cCCcchhcccccccEEeecCCceEEecc
Confidence 344444 455556788889999999888776642 444555 3332 22345778899999999
Q ss_pred CCCCc-ceEEEeecC----CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEE
Q 014154 245 SAQRR-PVMSFDFRE----TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 245 ~~~~~-~~~~~~~~~----~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~ 319 (430)
+-... .+...++|. ....|.+-..+| +|++|+.+|.|++||--..+....+++- ..+|..|..+.+|.+|+..
T Consensus 412 Rv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgL-G~~I~hVdvtadGKwil~T 489 (644)
T KOG2395|consen 412 RVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGL-GDAIKHVDVTADGKWILAT 489 (644)
T ss_pred cccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhccccc-CCceeeEEeeccCcEEEEe
Confidence 85333 233334442 244566655555 9999999999999997333334456665 8899999999999987765
Q ss_pred eCCCcEEEEEC
Q 014154 320 GLDSYLRFWDI 330 (430)
Q Consensus 320 ~~dg~i~iwd~ 330 (430)
+ +..+.+-++
T Consensus 490 c-~tyLlLi~t 499 (644)
T KOG2395|consen 490 C-KTYLLLIDT 499 (644)
T ss_pred c-ccEEEEEEE
Confidence 4 556777665
No 370
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.37 E-value=0.15 Score=49.20 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=38.0
Q ss_pred CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC
Q 014154 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299 (430)
Q Consensus 237 g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 299 (430)
|.|.-+|+.+++. +-..+.......+. +.-.+.+++.++.+|.++.+|.++|+.+..++..
T Consensus 441 g~l~AiD~~tGk~-~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKI-VWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCce-eeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 4566677777653 33222211111111 1124557788888999999999999999888753
No 371
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.36 E-value=0.17 Score=50.82 Aligned_cols=247 Identities=13% Similarity=0.106 Sum_probs=122.9
Q ss_pred CceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccc--------ccccCceEEEEccCCeeE
Q 014154 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE--------SSSRSRTLLTCTTKGKAS 136 (430)
Q Consensus 65 g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~ 136 (430)
+..|+.++.++.|.-.|..+|+.+..+................++.+++..... .....++++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 345788888899999999999988877652211100000011233344321000 000114677777777655
Q ss_pred EEEeeecCccccCCCcceEEeeecCCCceE-------------EEEEcC--CCCEEEEEeC----------CCeEEEEEC
Q 014154 137 MRSIEVTKVSAESSCSTVKSWNVCASGTIA-------------FSKVDI--SEKFSLFGGK----------GVEVNVWDL 191 (430)
Q Consensus 137 v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~-------------~~~~~~--~~~~l~~~~~----------d~~i~~~d~ 191 (430)
-.+..... .+|....++.+. .+.-.| .+..+++|+. +|.|+-+|.
T Consensus 274 ALDA~TGk----------~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da 343 (764)
T TIGR03074 274 ALDADTGK----------LCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDV 343 (764)
T ss_pred EEECCCCC----------EEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEEC
Confidence 55533222 123322221110 111122 2456666643 688999999
Q ss_pred CCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC-cEEEEECCCCCcceEEEeecCCCeEEEEecCCC
Q 014154 192 DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS 270 (430)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~ 270 (430)
++|+.++.+......... . .+.+.....++.+. ...-+|...+. +..-.+... ..+....
T Consensus 344 ~TGkl~W~~~~g~p~~~~-----------~--~~~g~~~~~gg~n~W~~~s~D~~~gl--vy~ptGn~~----pd~~g~~ 404 (764)
T TIGR03074 344 NTGALVWAWDPGNPDPTA-----------P--PAPGETYTRNTPNSWSVASYDEKLGL--VYLPMGNQT----PDQWGGD 404 (764)
T ss_pred CCCcEeeEEecCCCCccc-----------C--CCCCCEeccCCCCccCceEEcCCCCe--EEEeCCCcc----ccccCCc
Confidence 999999988653211100 0 11222222222111 23344444322 111111111 0110001
Q ss_pred CEEEEEeCCCcEEEEEccCCeEEeeeeC-CCC-------CCeEEEEecC-CCC---eEEEEeCCCcEEEEECCCCceeeE
Q 014154 271 FNIYIGNGSGDLASVDIRTGKLLGCFIG-KCS-------GSIRSIARHP-TLP---IIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 271 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~-------~~v~~i~~~~-~~~---~l~s~~~dg~i~iwd~~~~~~~~~ 338 (430)
+.....-..+.|.-.|+++|+....++. ||. ....-+.+.. +|+ .++.++.+|.++++|.++|+.+..
T Consensus 405 r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 405 RTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred cccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 1011112245678889999998888775 321 1112222322 553 789999999999999999999886
Q ss_pred EE
Q 014154 339 VF 340 (430)
Q Consensus 339 ~~ 340 (430)
+.
T Consensus 485 ~~ 486 (764)
T TIGR03074 485 VE 486 (764)
T ss_pred ce
Confidence 54
No 372
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.36 E-value=0.0057 Score=56.23 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=77.3
Q ss_pred ceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC------------------------------------------cceE
Q 014154 215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------------------------------------------RPVM 252 (430)
Q Consensus 215 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------------------------------------------~~~~ 252 (430)
.|+.+.| .++..-|++|...|.|.||.....+ .|..
T Consensus 3 ~v~~vs~--a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~ 80 (395)
T PF08596_consen 3 SVTHVSF--APETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLT 80 (395)
T ss_dssp -EEEEEE--ETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred eEEEEEe--cCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchh
Confidence 3778888 6777788999999999888643211 1233
Q ss_pred EEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeC-------CCCCCeEEEEecC-----CC---CeEE
Q 014154 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG-------KCSGSIRSIARHP-----TL---PIIA 317 (430)
Q Consensus 253 ~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~v~~i~~~~-----~~---~~l~ 317 (430)
.++...++|++++.|.-| ++++|..+|.+.|.|+|....++.-.- .....|+++.|.. |+ -.|+
T Consensus 81 l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 81 LLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp EE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred heeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 334446899999998555 999999999999999998888766321 1234688888872 23 4688
Q ss_pred EEeCCCcEEEEECC
Q 014154 318 SCGLDSYLRFWDIK 331 (430)
Q Consensus 318 s~~~dg~i~iwd~~ 331 (430)
+|...|.+.+|.+-
T Consensus 160 vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 160 VGTNSGNVLTFKIL 173 (395)
T ss_dssp EEETTSEEEEEEEE
T ss_pred EEeCCCCEEEEEEe
Confidence 89999999999774
No 373
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=97.32 E-value=0.22 Score=50.01 Aligned_cols=112 Identities=16% Similarity=0.035 Sum_probs=73.6
Q ss_pred EEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC-CCCeEEEEecCCCCeEEEEeCCCcEEEEECCC-CceeeEEEe
Q 014154 264 VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKT-RQLLSAVFL 341 (430)
Q Consensus 264 ~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~ 341 (430)
.++.|-..++++| ....+++||+-..++++...... ...|+.+++ .+..++.|...-.|.++-.+. ...+..+ .
T Consensus 939 ~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~f-a 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVF-A 1014 (1205)
T ss_pred eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEE-e
Confidence 3455766677666 56689999998877765544321 557788887 666788886555565544433 2333333 3
Q ss_pred eccccceEEeeeccccccccccCCCCceEecCCCCCcc
Q 014154 342 KQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDTQE 379 (430)
Q Consensus 342 ~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~~~ 379 (430)
.......++++.+-..+.++.+..-|.+.+...+....
T Consensus 1015 dD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P~d~~ 1052 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELLDYDTVAGADRFGNIAVVRIPPDVS 1052 (1205)
T ss_pred CCCccceeeEEEEecCCceeeccccCcEEEEECCCcch
Confidence 44445567888887777778888889998888876443
No 374
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.28 E-value=0.093 Score=44.94 Aligned_cols=169 Identities=8% Similarity=0.072 Sum_probs=111.1
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 242 (430)
..+.++.|+|+.+.|++......-.++=-.+|+.+.++..... .....+.+ -.++.+.++--.++.+.++
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~--------~DpE~Iey--ig~n~fvi~dER~~~l~~~ 155 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF--------SDPETIEY--IGGNQFVIVDERDRALYLF 155 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc--------CChhHeEE--ecCCEEEEEehhcceEEEE
Confidence 4488999999999999988888888877778888887765321 22345666 4566777777778888887
Q ss_pred ECCCCCcceE----EE-----eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEE---eeeeCC------CCCCe
Q 014154 243 DTSAQRRPVM----SF-----DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL---GCFIGK------CSGSI 304 (430)
Q Consensus 243 d~~~~~~~~~----~~-----~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~------~~~~v 304 (430)
.+......+. .+ ...+.....++|.|..+.|+.+-+-.-+.||....+... .....+ .-..|
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 7665322110 11 111446678999999999999888888888876533211 111111 01246
Q ss_pred EEEEecC-CCCeEEEEeCCCcEEEEECCCCceeeEEEee
Q 014154 305 RSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAVFLK 342 (430)
Q Consensus 305 ~~i~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 342 (430)
.++.|++ .+.+|+-+.+++.+.-.|.. |..+..+.+.
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~ 273 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLT 273 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEec
Confidence 7788886 45666777777888888864 5656655443
No 375
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.17 E-value=0.00056 Score=55.64 Aligned_cols=142 Identities=17% Similarity=0.124 Sum_probs=79.4
Q ss_pred EEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC-eEEeeeeCCCCCCeEE-E
Q 014154 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRS-I 307 (430)
Q Consensus 230 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~-i 307 (430)
+...+.+|.|+-++++.-+...+.-..+... ..+ -.-+..+++|+.+|.|++|..... .....+... ...|.+ |
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v--~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~-~e~i~~~I 108 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG-QRV--VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG-EESIDLGI 108 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc-eee--cccCceEEeecccceEEEecCCccchHHHhhhcc-cccceecc
Confidence 3444778888888877533222222222222 111 123568899999999999987622 211112221 223332 2
Q ss_pred EecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccccc-cccc--CCCCceEecCCCCC
Q 014154 308 ARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV-ANAA--ADAPMLEIQNGNDT 377 (430)
Q Consensus 308 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~~~~--~~d~~i~~~~~~~~ 377 (430)
.--.++.+..+++.||.||.|++.-.+.+.. ..+|..........+..+. +..+ +.|..++.|+....
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~--~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGY--VGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeee--eccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 2233456788999999999999998887775 3344312222333333333 3444 67777777777654
No 376
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.12 E-value=0.37 Score=48.54 Aligned_cols=74 Identities=9% Similarity=0.015 Sum_probs=46.9
Q ss_pred CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCC------cceeeeeecCC--------------CCCceeEEeec
Q 014154 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS------NCVLAASIDDS--------------QNDPLLAVARK 73 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--------------p~g~~l~~g~~ 73 (430)
..+++.++.++.|.-.|..++ +.+=++...... ..+-.+++-.. ..+..++.++.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TG-----k~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~ 268 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATG-----KEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS 268 (764)
T ss_pred CCEEEEECCCCeEEEEECCCC-----cEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecC
Confidence 367888888999988898887 444333221110 01111111111 23447888999
Q ss_pred CCeEEEecCCCCcccceee
Q 014154 74 NGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 74 dg~i~iwd~~~~~~~~~~~ 92 (430)
|+.|.-.|..+|+.+..+.
T Consensus 269 Dg~LiALDA~TGk~~W~fg 287 (764)
T TIGR03074 269 DARLIALDADTGKLCEDFG 287 (764)
T ss_pred CCeEEEEECCCCCEEEEec
Confidence 9999999999999887654
No 377
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.11 E-value=0.0017 Score=39.06 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=31.0
Q ss_pred CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCcee
Q 014154 301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (430)
Q Consensus 301 ~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 336 (430)
...|..++|+|...+||.++.+|.|.+|.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 457999999999999999999999999999 56554
No 378
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.031 Score=51.48 Aligned_cols=143 Identities=15% Similarity=0.157 Sum_probs=99.0
Q ss_pred EEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCC-------EEEEEeCCCcEEEEEccCC-e-EEeeeeCC
Q 014154 229 KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-------NIYIGNGSGDLASVDIRTG-K-LLGCFIGK 299 (430)
Q Consensus 229 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~-------~l~~~~~d~~i~iwd~~~~-~-~~~~~~~~ 299 (430)
+|.++.....++-.|+..++ .+..+..+.. |.-+.+.|+.+ .-+.|-.++.|.-||.|-. . .+...++|
T Consensus 348 il~~~~~~~~l~klDIE~GK-IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGK-IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred EeeCCCCcCcceeeecccce-eeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 44455566778888998876 5778887755 77777777642 2245667889999999832 2 22222332
Q ss_pred C---CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154 300 C---SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 300 ~---~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~ 376 (430)
. .....|++-..+| +++.||.+|.||+||- .+..-.+. +++- +..|..+..+.||+++.+..+..+.+-+..-
T Consensus 426 qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTA-lPgL-G~~I~hVdvtadGKwil~Tc~tyLlLi~t~~ 501 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTA-LPGL-GDAIKHVDVTADGKWILATCKTYLLLIDTLI 501 (644)
T ss_pred ccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhc-cccc-CCceeeEEeeccCcEEEEecccEEEEEEEec
Confidence 1 2234555554555 7899999999999997 55544443 5554 6668999999999998888899998877655
Q ss_pred C
Q 014154 377 T 377 (430)
Q Consensus 377 ~ 377 (430)
.
T Consensus 502 k 502 (644)
T KOG2395|consen 502 K 502 (644)
T ss_pred c
Confidence 3
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.10 E-value=0.075 Score=51.81 Aligned_cols=186 Identities=12% Similarity=0.017 Sum_probs=96.9
Q ss_pred ceEEEEEcCCCCEEEEEe------CCC--eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC
Q 014154 164 TIAFSKVDISEKFSLFGG------KGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN 235 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~------~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 235 (430)
.+...+++|+++.++... .|. .|.+++... .. ..+... .....-.| +|+|..|++...
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g----------~~~t~PsW--spDG~~lw~v~d 416 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEG----------HSLTRPSW--SLDADAVWVVVD 416 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecC----------CCCCCceE--CCCCCceEEEec
Confidence 567888999999887665 233 455555422 22 222111 12455577 788776666543
Q ss_pred C------------CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEE---EEccCCeE-E---eee
Q 014154 236 D------------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS---VDIRTGKL-L---GCF 296 (430)
Q Consensus 236 d------------g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i---wd~~~~~~-~---~~~ 296 (430)
. +.+.+.++..+.. .. .....|..+.|||||..|+... ++.|++ -....|.. + ..+
T Consensus 417 g~~~~~v~~~~~~gql~~~~vd~ge~-~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l 491 (591)
T PRK13616 417 GNTVVRVIRDPATGQLARTPVDASAV-AS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREV 491 (591)
T ss_pred CcceEEEeccCCCceEEEEeccCchh-hh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEe
Confidence 2 2333334443221 11 2245799999999999888765 577776 44344431 1 112
Q ss_pred eCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC-CceeeEEEeeccccceEEeeeccccccccccCCCCceEe
Q 014154 297 IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEI 371 (430)
Q Consensus 297 ~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~ 371 (430)
.......+..+.|.+++.++ .+..++.-.+|.+.- |.....+ ..+.....+..++=+++ .+.....++.+.+
T Consensus 492 ~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~-~iyv~~~~g~~~l 564 (591)
T PRK13616 492 GPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS-TVYVTDARAVLQL 564 (591)
T ss_pred ecccCCccccceEecCCEEE-EEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc-eEEEEcCCceEEe
Confidence 22113346889999998854 544444444444321 2221111 11111233456666653 3344445554443
No 380
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.07 E-value=0.19 Score=44.55 Aligned_cols=188 Identities=14% Similarity=0.071 Sum_probs=103.4
Q ss_pred ceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEE
Q 014154 153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA 232 (430)
Q Consensus 153 ~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 232 (430)
..++|... ..+.++..-..+..|+++.. -+.+++.+++.....+....... .....+.+.. .|+|.+-++
T Consensus 58 ~~~~~~~p--~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~----~~~r~ND~~v--~pdG~~wfg 127 (307)
T COG3386 58 KKRVFPSP--GGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGL----PLNRPNDGVV--DPDGRIWFG 127 (307)
T ss_pred ceEEEECC--CCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCC----CcCCCCceeE--cCCCCEEEe
Confidence 44555532 33344433334445554433 36667766555522222211110 0133455566 677776655
Q ss_pred EeC-----------CCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC-CcEEEEEccC--Ce----EEe
Q 014154 233 GTN-----------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-GDLASVDIRT--GK----LLG 294 (430)
Q Consensus 233 ~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-~~i~iwd~~~--~~----~~~ 294 (430)
... -|.|+.+|.. +. .+..+..+-..-+.|+||||++.|+..... +.|.-|++.. +. ...
T Consensus 128 t~~~~~~~~~~~~~~G~lyr~~p~-g~-~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~ 205 (307)
T COG3386 128 DMGYFDLGKSEERPTGSLYRVDPD-GG-VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGF 205 (307)
T ss_pred CCCccccCccccCCcceEEEEcCC-CC-EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceE
Confidence 333 1334555542 22 244444444455789999999888777654 7888887752 21 111
Q ss_pred eeeCCCCCCeEEEEecCCCCeEEEEeCCC-cEEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154 295 CFIGKCSGSIRSIARHPTLPIIASCGLDS-YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 295 ~~~~~~~~~v~~i~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~ 356 (430)
.+.....+..-.++...+|.+.+++..+| .|.+|+.. |+++..+.++. ..+++++|--
T Consensus 206 ~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~---~~~t~~~FgG 264 (307)
T COG3386 206 VDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV---KRPTNPAFGG 264 (307)
T ss_pred EEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC---CCCccceEeC
Confidence 12211245566677777887776555554 89999988 99998866542 2356777754
No 381
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.04 E-value=0.23 Score=44.86 Aligned_cols=92 Identities=13% Similarity=0.191 Sum_probs=45.7
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCC
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 203 (430)
..++.+..+|.-.+|.++.... .+....-..+.......++|+.+.++.......|+..|+++.+....+..+
T Consensus 49 kllF~s~~dg~~nly~lDL~t~-------~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 49 KLLFASDFDGNRNLYLLDLATG-------EITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp EEEEEE-TTSS-EEEEEETTT--------EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred EEEEEeccCCCcceEEEEcccC-------EEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 3555666677777777664432 333332221222334566788888876666678899999887654444333
Q ss_pred CCCCCCCcCCcceeEEEEeecCCCCEEE
Q 014154 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 231 (430)
. .++-...|..+.++..++
T Consensus 122 ~---------~~~g~gt~v~n~d~t~~~ 140 (386)
T PF14583_consen 122 D---------DWKGYGTWVANSDCTKLV 140 (386)
T ss_dssp T---------TEEEEEEEEE-TTSSEEE
T ss_pred c---------ccccccceeeCCCccEEE
Confidence 2 555555664455555544
No 382
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.97 E-value=0.29 Score=44.83 Aligned_cols=149 Identities=14% Similarity=0.134 Sum_probs=76.7
Q ss_pred ceEEEEEcCCCCEEEEEe--CC---CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCc
Q 014154 164 TIAFSKVDISEKFSLFGG--KG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~--~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 238 (430)
.+..+.|.+++..|+..- .+ ..+.++|..++.............+ ..-....|....+..+|.....+|.
T Consensus 185 yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv-----~~~~~~~~~~~~~~~~l~~s~~~G~ 259 (353)
T PF00930_consen 185 YLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWV-----DVYDPPHFLGPDGNEFLWISERDGY 259 (353)
T ss_dssp EEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSS-----SSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred CcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcce-----eeecccccccCCCCEEEEEEEcCCC
Confidence 466788888887444332 22 2366677776554333322221111 1112334421234445556667786
Q ss_pred EEEEECCCCCcceEEEeecCCCeEE-EEecCCCCEEE-EEeCC----CcEEEEEcc-CCeEEeeeeCCCCCCeEEEEecC
Q 014154 239 VRLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIY-IGNGS----GDLASVDIR-TGKLLGCFIGKCSGSIRSIARHP 311 (430)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~i~~-~~~sp~~~~l~-~~~~d----~~i~iwd~~-~~~~~~~~~~~~~~~v~~i~~~~ 311 (430)
-+||-+.........+....-.|.. +.++++++.|+ ++..+ ..|+..++. .+.. ..+... ...-..+.|||
T Consensus 260 ~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~-~~~~~~~~~Sp 337 (353)
T PF00930_consen 260 RHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP-KCLTCE-DGDHYSASFSP 337 (353)
T ss_dssp EEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE-EESSTT-SSTTEEEEE-T
T ss_pred cEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe-EeccCC-CCCceEEEECC
Confidence 5554443322224556555566754 67788876665 55442 346666776 4443 455443 22226899999
Q ss_pred CCCeEEEE
Q 014154 312 TLPIIASC 319 (430)
Q Consensus 312 ~~~~l~s~ 319 (430)
++++++-.
T Consensus 338 dg~y~v~~ 345 (353)
T PF00930_consen 338 DGKYYVDT 345 (353)
T ss_dssp TSSEEEEE
T ss_pred CCCEEEEE
Confidence 99887644
No 383
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.004 Score=61.76 Aligned_cols=100 Identities=13% Similarity=0.089 Sum_probs=74.0
Q ss_pred CCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccce
Q 014154 269 DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEV 348 (430)
Q Consensus 269 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 348 (430)
.+..++.|+..|.+-..|....=....-..+-.++|++++|+.+|.+++.|-.+|.|.+||+..+..++.+...++....
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 45688999999999998886531100111122679999999999999999999999999999999999987776665555
Q ss_pred EEeeeccccccc-cccCCCCc
Q 014154 349 VFDSAFADKEVA-NAAADAPM 368 (430)
Q Consensus 349 v~~~~~s~~g~~-~~~~~d~~ 368 (430)
+.-+.+..++.. +++...|.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc
Confidence 555566555554 66666665
No 384
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.77 E-value=0.1 Score=44.38 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=83.1
Q ss_pred eeEEEEeecCC-CCEEEEEeCCCc-EEEEECCCCCcceEEEeecCCC--eEEEEecCCCCEEEEEeCC-----CcEEEEE
Q 014154 216 FTSAAFLSIDD-HRKFVAGTNDHQ-VRLYDTSAQRRPVMSFDFRETP--IKAVAEEPDSFNIYIGNGS-----GDLASVD 286 (430)
Q Consensus 216 v~~~~~~~~~~-~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~--i~~~~~sp~~~~l~~~~~d-----~~i~iwd 286 (430)
...++| +|. ..-++.+-.-|+ ..++|.+..+.++.... .++. --.=.|||||.+|+..-.| |.|-|||
T Consensus 70 ~Hgi~~--~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s-~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 70 GHGIAF--HPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS-QEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred cCCeec--CCCCcceEEEEecCCceEEEECCCCCcCcEEEec-ccCceeecccccCCCCcEEEeecCCCCCCCceEEEEe
Confidence 344555 332 334455555554 45788887665443221 1111 0112589999999987544 7899999
Q ss_pred ccCC-eEEeeeeCCCCCCeEEEEecCCCCeEEEEeC------------------CCcEEEEECCCCceeeEEEeeccc-c
Q 014154 287 IRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGL------------------DSYLRFWDIKTRQLLSAVFLKQHL-N 346 (430)
Q Consensus 287 ~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~------------------dg~i~iwd~~~~~~~~~~~~~~~~-~ 346 (430)
.+.+ +.+.++..| .-....+.|.+||+.|+.+.. .-++.+.|..+|+++.+..+.... .
T Consensus 147 ~r~~fqrvgE~~t~-GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~ 225 (366)
T COG3490 147 AREGFQRVGEFSTH-GIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ 225 (366)
T ss_pred cccccceecccccC-CcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh
Confidence 9854 457788887 667788999999998887632 112444455556665554333110 1
Q ss_pred ceEEeeeccccccc
Q 014154 347 EVVFDSAFADKEVA 360 (430)
Q Consensus 347 ~~v~~~~~s~~g~~ 360 (430)
-.+..++..+||..
T Consensus 226 lSiRHld~g~dgtv 239 (366)
T COG3490 226 LSIRHLDIGRDGTV 239 (366)
T ss_pred cceeeeeeCCCCcE
Confidence 22455666666555
No 385
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.76 E-value=0.051 Score=52.53 Aligned_cols=116 Identities=12% Similarity=0.046 Sum_probs=82.1
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEec--CCCCeEEEEeCCCcEEEEECC------
Q 014154 260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH--PTLPIIASCGLDSYLRFWDIK------ 331 (430)
Q Consensus 260 ~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~s~~~dg~i~iwd~~------ 331 (430)
...-+.-|.-++..++-+....+.|||.+.+...++-.-.....|..+.|. |+++.+++.|..+.|.+|.-.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 344444455555555555556799999998886544332126789999986 688889888999999998542
Q ss_pred ---CCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154 332 ---TRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 332 ---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~ 376 (430)
+...+..+.+..+....|.+..|-++|.+++++ ++.+.|++...
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~~ 157 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDKWL 157 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECCCc
Confidence 345666766777776778999999999986554 46777877644
No 386
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.74 E-value=0.52 Score=44.32 Aligned_cols=246 Identities=11% Similarity=0.060 Sum_probs=122.4
Q ss_pred eeeecCCCCCceeEEe-ecCC----eEEEecCCCCccccee-eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEE
Q 014154 56 AASIDDSQNDPLLAVA-RKNG----LTDILNPLNGDLRVAI-SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC 129 (430)
Q Consensus 56 ~~~~~~~p~g~~l~~g-~~dg----~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 129 (430)
.+++ +|+|++||.+ +..| .|++.|+.+|+.+... ... ....+.|.+... ..+.+.
T Consensus 128 ~~~~--Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~----------~~~~~~W~~d~~-------~~~y~~ 188 (414)
T PF02897_consen 128 GFSV--SPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP----------KFSSVSWSDDGK-------GFFYTR 188 (414)
T ss_dssp EEEE--TTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE----------ESEEEEECTTSS-------EEEEEE
T ss_pred eeeE--CCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc----------ccceEEEeCCCC-------EEEEEE
Confidence 4556 8999998875 3334 4999999999765432 211 111244444333 334443
Q ss_pred ccCC--------eeEEEEeeecCccccCCCcceEEeeecCCCc-eEEEEEcCCCCEEEEEeC---C-CeEEEEECCCC--
Q 014154 130 TTKG--------KASMRSIEVTKVSAESSCSTVKSWNVCASGT-IAFSKVDISEKFSLFGGK---G-VEVNVWDLDKC-- 194 (430)
Q Consensus 130 ~~~g--------~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~-i~~~~~~~~~~~l~~~~~---d-~~i~~~d~~~~-- 194 (430)
.... .-.||....... ......+|....... ...+..++++++|+.... + ..+++.++..+
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~~gt~----~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~ 264 (414)
T PF02897_consen 189 FDEDQRTSDSGYPRQVYRHKLGTP----QSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS 264 (414)
T ss_dssp CSTTTSS-CCGCCEEEEEEETTS-----GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred eCcccccccCCCCcEEEEEECCCC----hHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence 3321 223333322211 111245665444444 667888999999876443 2 35788888764
Q ss_pred --eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe---CCCcEEEEECCCCCc--ceEEEeecCC--CeEEEE
Q 014154 195 --EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRR--PVMSFDFRET--PIKAVA 265 (430)
Q Consensus 195 --~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~--~~~~~~~~~~--~i~~~~ 265 (430)
.....+..... .....+.. ..+.+++... ..+.|.-.++..... ....+..+.. .+..+.
T Consensus 265 ~~~~~~~l~~~~~--------~~~~~v~~---~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~ 333 (414)
T PF02897_consen 265 PDAKPKLLSPRED--------GVEYYVDH---HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS 333 (414)
T ss_dssp SS-SEEEEEESSS--------S-EEEEEE---ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE
T ss_pred CcCCcEEEeCCCC--------ceEEEEEc---cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE
Confidence 11112111110 11222322 2333444332 235677778776542 1224444544 344444
Q ss_pred ecCCCCEEEEE-eCCC--cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEE--EEe--CCCcEEEEECCCCceee
Q 014154 266 EEPDSFNIYIG-NGSG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA--SCG--LDSYLRFWDIKTRQLLS 337 (430)
Q Consensus 266 ~sp~~~~l~~~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~--s~~--~dg~i~iwd~~~~~~~~ 337 (430)
. .+.+|+.. -.++ .|+++++..+.....+.....+.|..+...+++..+. ..| .-++++.||+.+++...
T Consensus 334 ~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 334 L--FKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp E--ETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred E--ECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 4 34455544 3443 5889999845555555443245566776666665432 222 23578888998887653
No 387
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.67 E-value=0.43 Score=42.43 Aligned_cols=143 Identities=17% Similarity=0.076 Sum_probs=86.0
Q ss_pred ceEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEE
Q 014154 164 TIAFSKVDISEKFSLFGGK-----------GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA 232 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 232 (430)
..+.+...|+|.+.+.... -|.|+.+|. .+..+..+..+- ...+.++| +||++.|+.
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~---------~~~NGla~--SpDg~tly~ 179 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL---------TIPNGLAF--SPDGKTLYV 179 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE---------EecCceEE--CCCCCEEEE
Confidence 3456677777776654332 123444443 333333333311 44678999 899977766
Q ss_pred EeC-CCcEEEEECCC--C----CcceEEEeecCCCeEEEEecCCCCEEEEEeCCC-cEEEEEccCCeEEeeeeCCCCCCe
Q 014154 233 GTN-DHQVRLYDTSA--Q----RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG-DLASVDIRTGKLLGCFIGKCSGSI 304 (430)
Q Consensus 233 ~~~-dg~i~iwd~~~--~----~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~v 304 (430)
+.. .+.|+-|++.. + ......+....+..-.++...+|.+.+++..+| .|.+|+.. ++++..+... ...+
T Consensus 180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP-~~~~ 257 (307)
T COG3386 180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP-VKRP 257 (307)
T ss_pred EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC-CCCC
Confidence 544 47888887752 1 111222223345566777778887775554444 89999987 9998888876 4678
Q ss_pred EEEEec-CCCCeEEEEe
Q 014154 305 RSIARH-PTLPIIASCG 320 (430)
Q Consensus 305 ~~i~~~-~~~~~l~s~~ 320 (430)
++++|- |+.+.|+..+
T Consensus 258 t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 258 TNPAFGGPDLNTLYITS 274 (307)
T ss_pred ccceEeCCCcCEEEEEe
Confidence 888884 3445444443
No 388
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.67 E-value=0.0067 Score=36.51 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=30.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 014154 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI 197 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 197 (430)
...|.+++|+|..++||.++.+|.|.+|.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 457999999999999999999999999998 55544
No 389
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.56 E-value=0.0011 Score=64.35 Aligned_cols=167 Identities=14% Similarity=0.080 Sum_probs=94.8
Q ss_pred CceEEEEEcC-CCCEEEEEeCCCeEEEEECC--CCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcE
Q 014154 163 GTIAFSKVDI-SEKFSLFGGKGVEVNVWDLD--KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (430)
Q Consensus 163 ~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 239 (430)
+.+..+.|.. +-..+. -.-|.+.||++. .|+....+..+...+++... ..|.-+-| -++..++..+-.++.|
T Consensus 133 G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~-~~V~wcp~--~~~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 133 GGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDP-QLVSWCPI--AVNKVYICYGLKGGEI 207 (1283)
T ss_pred CCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCc-ceeeeccc--ccccceeeeccCCCce
Confidence 4555566633 212222 334578889875 34443333333222222211 22333333 2345677777788899
Q ss_pred EEEECCCCCcceEEEeecCCCeEEEE-----------ecCCCCEEEEEeCCCcEEEEEcc-----CCeEEeeeeCCCCCC
Q 014154 240 RLYDTSAQRRPVMSFDFRETPIKAVA-----------EEPDSFNIYIGNGSGDLASVDIR-----TGKLLGCFIGKCSGS 303 (430)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~i~~~~-----------~sp~~~~l~~~~~d~~i~iwd~~-----~~~~~~~~~~~~~~~ 303 (430)
++....... ...+.+|...+..++ +||||..++.++.||.++.|.+. .-++++..+.|...+
T Consensus 208 ~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p 285 (1283)
T KOG1916|consen 208 RLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHP 285 (1283)
T ss_pred eEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCC
Confidence 988776532 234445665544433 58999999999999998888654 344566677763233
Q ss_pred eEEEEecCCC---------CeEEEEe-CCCcEEEEECCCCcee
Q 014154 304 IRSIARHPTL---------PIIASCG-LDSYLRFWDIKTRQLL 336 (430)
Q Consensus 304 v~~i~~~~~~---------~~l~s~~-~dg~i~iwd~~~~~~~ 336 (430)
-.|.-|+.+. .++++++ .+..+++|.....+++
T Consensus 286 ~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 286 RVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 3333344321 2344444 4456999998888877
No 390
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.56 E-value=0.6 Score=42.79 Aligned_cols=160 Identities=14% Similarity=0.082 Sum_probs=77.0
Q ss_pred ceEEeeecCC--CceEEEEEcCCCCEEEEEe--------------------CCCeEEEEECCCCeeeEeeCCCCCCCCCC
Q 014154 153 TVKSWNVCAS--GTIAFSKVDISEKFSLFGG--------------------KGVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (430)
Q Consensus 153 ~i~~~~~~~~--~~i~~~~~~~~~~~l~~~~--------------------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 210 (430)
.+..|..... ..-..+-+.|..+.+++.. ...++.+||+.+.+.+.++......
T Consensus 169 v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g---- 244 (461)
T PF05694_consen 169 VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG---- 244 (461)
T ss_dssp EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE----
T ss_pred ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC----
Confidence 3445554322 2234566677777777643 2457999999999998887664311
Q ss_pred cCCcceeEEEEeecCCCCEEEE-EeCCCcEEEEEC-CCCC---cceEEEeec-----------------CCCeEEEEecC
Q 014154 211 FTPTWFTSAAFLSIDDHRKFVA-GTNDHQVRLYDT-SAQR---RPVMSFDFR-----------------ETPIKAVAEEP 268 (430)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~s-~~~dg~i~iwd~-~~~~---~~~~~~~~~-----------------~~~i~~~~~sp 268 (430)
.-+..+.|.-.|+..+=++ +.-..+|..|-- ..+. +.+..+... ..-|+.|.+|.
T Consensus 245 ---~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl 321 (461)
T PF05694_consen 245 ---QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL 321 (461)
T ss_dssp ---EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T
T ss_pred ---CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc
Confidence 2356788865666654333 334555555533 2221 011122110 23578999999
Q ss_pred CCCEEEEEe-CCCcEEEEEccCC---eEEeeeeCC---------------CCCCeEEEEecCCCCeEEEE
Q 014154 269 DSFNIYIGN-GSGDLASVDIRTG---KLLGCFIGK---------------CSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 269 ~~~~l~~~~-~d~~i~iwd~~~~---~~~~~~~~~---------------~~~~v~~i~~~~~~~~l~s~ 319 (430)
|.++|+.++ .+|.|+.||+... +++.++.-. ..+...-+..|.||+.|...
T Consensus 322 DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 322 DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 999998877 6799999999753 344333210 01223567777888777554
No 391
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.47 E-value=0.69 Score=42.44 Aligned_cols=235 Identities=11% Similarity=0.082 Sum_probs=90.2
Q ss_pred cceeeec-CCCceEEEEccCCCCCcceeeeecCC---CC--CCcceeeeeecCCCCCceeEE--eecC----CeEEEecC
Q 014154 15 LRALTFD-SLGLIKVIEARGEHGGVPKVVERWGD---PH--SSNCVLAASIDDSQNDPLLAV--ARKN----GLTDILNP 82 (430)
Q Consensus 15 ~~l~t~~-~dg~i~vw~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~p~g~~l~~--g~~d----g~i~iwd~ 82 (430)
-+|+..+ ..+.|.|.|..+.+ ..+++.+.+.. +. +-..-..+ .--|+|+++++ |+.+ |-+.+.|-
T Consensus 88 r~Li~PgL~SsrIyviD~~~dP-r~P~l~KvIe~~ev~~k~g~s~PHT~--Hclp~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDP-RKPRLHKVIEPEEVFEKTGLSRPHTV--HCLPDGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-T-TS-EEEEEE-HHHHHHHH-EEEEEEE--EE-SS--EEEEEEEETTS-S--EEEEE-T
T ss_pred CcEEeeeeccCcEEEEECCCCC-CCCceEeeeCHHHHHhhcCCCCCcee--eecCCccEEEEeccCCCCCCCCcEEEEcC
Confidence 4455544 78899999998753 33445444442 11 10001111 11467777776 3333 45778887
Q ss_pred CCCcccceeeccCCCCCCCCCCceEEEE-EeecCcccccccCceEEEEc--------------------cCCeeEEEEee
Q 014154 83 LNGDLRVAISNAGDSGAQPEDDGIVGLH-LFKRQREESSSRSRTLLTCT--------------------TKGKASMRSIE 141 (430)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~--------------------~~g~~~v~~~~ 141 (430)
++.+.....+.- ......+.. ||.... +.+++.. .++.+.+|++.
T Consensus 165 ~tf~v~g~We~~-------~~~~~~gYDfw~qpr~-------nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~ 230 (461)
T PF05694_consen 165 ETFEVKGRWEKD-------RGPQPFGYDFWYQPRH-------NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWS 230 (461)
T ss_dssp TT--EEEE--SB--------TT------EEEETTT-------TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETT
T ss_pred ccccccceeccC-------CCCCCCCCCeEEcCCC-------CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECC
Confidence 665544443320 001111122 233322 2333322 24566666654
Q ss_pred ecCccccCCCcceEEeeecCCC-ceEEEEEcC--CCCEEEEE-eCCCeEEEEEC-CCCe----eeEeeCCCCCCCCCCcC
Q 014154 142 VTKVSAESSCSTVKSWNVCASG-TIAFSKVDI--SEKFSLFG-GKGVEVNVWDL-DKCE----KIWTAKPPPKNSLGIFT 212 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~~~-~i~~~~~~~--~~~~l~~~-~~d~~i~~~d~-~~~~----~~~~~~~~~~~~~~~~~ 212 (430)
... .++..++...+ ....+.|.. +..+-+++ ....+|..|-- +.++ .+..+.....+.-.+..
T Consensus 231 ~r~--------~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ 302 (461)
T PF05694_consen 231 TRK--------LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPE 302 (461)
T ss_dssp TTE--------EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---G
T ss_pred CCc--------EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccc
Confidence 332 44555554332 344566643 44443333 34445555533 3332 22222222111111111
Q ss_pred --------CcceeEEEEeecCCCCEEEEEe-CCCcEEEEECCCCCcceEEEeecC------------------CCeEEEE
Q 014154 213 --------PTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPVMSFDFRE------------------TPIKAVA 265 (430)
Q Consensus 213 --------~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~------------------~~i~~~~ 265 (430)
+.-|+.+.. +.|.++|..++ ..|.|+.||+.....|...-+-.- +...-+.
T Consensus 303 ml~~~~~~P~LitDI~i--SlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvq 380 (461)
T PF05694_consen 303 MLKPFGAVPPLITDILI--SLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQ 380 (461)
T ss_dssp GGGGG-EE------EEE---TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EE
T ss_pred cccccccCCCceEeEEE--ccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEE
Confidence 244677777 78888877665 589999999998776655432110 1224566
Q ss_pred ecCCCCEEEEE
Q 014154 266 EEPDSFNIYIG 276 (430)
Q Consensus 266 ~sp~~~~l~~~ 276 (430)
.|.||+.|+..
T Consensus 381 lS~DGkRlYvT 391 (461)
T PF05694_consen 381 LSLDGKRLYVT 391 (461)
T ss_dssp E-TTSSEEEEE
T ss_pred EccCCeEEEEE
Confidence 77777777654
No 392
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.44 E-value=0.83 Score=42.97 Aligned_cols=197 Identities=15% Similarity=0.155 Sum_probs=107.1
Q ss_pred EEEEEcCCCCEEEEE-eCCC----eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC---
Q 014154 166 AFSKVDISEKFSLFG-GKGV----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--- 237 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~-~~d~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--- 237 (430)
..+.++|++++++.+ +..| .|+++|+++++.+...... .....+.| .+++..|+....+.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~----------~~~~~~~W--~~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN----------PKFSSVSW--SDDGKGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE----------EESEEEEE--CTTSSEEEEEECSTTTS
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc----------cccceEEE--eCCCCEEEEEEeCcccc
Confidence 357889999998865 3333 4999999999776432111 11223888 78878776665433
Q ss_pred --------cEEEEECCCCCcc-eEEEeecCCC--eEEEEecCCCCEEEEEeCC----CcEEEEEccCC----eEEeeeeC
Q 014154 238 --------QVRLYDTSAQRRP-VMSFDFRETP--IKAVAEEPDSFNIYIGNGS----GDLASVDIRTG----KLLGCFIG 298 (430)
Q Consensus 238 --------~i~iwd~~~~~~~-~~~~~~~~~~--i~~~~~sp~~~~l~~~~~d----~~i~iwd~~~~----~~~~~~~~ 298 (430)
.|+.|.+.+.... ...+...... ...+..++++++|+..... ..+.+.|+..+ .....+..
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~ 274 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP 274 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE
T ss_pred cccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC
Confidence 3788888875432 3445443333 5688899999998865432 35788888774 22233333
Q ss_pred CCCCCeEEEEecCCCCeEEEEe---CCCcEEEEECCCCce--eeEEEeeccccceEEeeeccccccccccCCC--CceEe
Q 014154 299 KCSGSIRSIARHPTLPIIASCG---LDSYLRFWDIKTRQL--LSAVFLKQHLNEVVFDSAFADKEVANAAADA--PMLEI 371 (430)
Q Consensus 299 ~~~~~v~~i~~~~~~~~l~s~~---~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d--~~i~~ 371 (430)
...+....+... .+.+++... .++.|...++.+... ...+.+.......+..+....+..++....+ ..|.+
T Consensus 275 ~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v 353 (414)
T PF02897_consen 275 REDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRV 353 (414)
T ss_dssp SSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred CCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEE
Confidence 213333444443 443444332 345677777776553 1212122221234555555444433444333 45667
Q ss_pred cCCC
Q 014154 372 QNGN 375 (430)
Q Consensus 372 ~~~~ 375 (430)
++..
T Consensus 354 ~~~~ 357 (414)
T PF02897_consen 354 YDLD 357 (414)
T ss_dssp EETT
T ss_pred EECC
Confidence 7776
No 393
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.044 Score=55.18 Aligned_cols=155 Identities=15% Similarity=0.129 Sum_probs=94.5
Q ss_pred CCceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeE--eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC
Q 014154 162 SGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH 237 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 237 (430)
.-.+..+...++....++... +-.|+.||+++-.... +..................++.|.+.+ ....+.+..|+
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v-p~n~av~l~dl 178 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV-PLNSAVDLSDL 178 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc-cchhhhhcccc
Confidence 345666666677665554433 3378999997532211 011111111223333556777884322 22456667899
Q ss_pred cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeC---CCCCCeEEEEecCCCC
Q 014154 238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG---KCSGSIRSIARHPTLP 314 (430)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~v~~i~~~~~~~ 314 (430)
.|++..+......+..+.. ....++++|+|.|+.+++|-..|++.-|-. +.+....+.. .....|.+|+|-....
T Consensus 179 sl~V~~~~~~~~~v~s~p~-t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQNVTSFPV-TNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred chhhhhhhhhhhhhcccCc-ccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEeccee
Confidence 9999887753333333332 357899999999999999999999998875 3443333332 2146899999987777
Q ss_pred eEEEE
Q 014154 315 IIASC 319 (430)
Q Consensus 315 ~l~s~ 319 (430)
+|++-
T Consensus 257 flvvy 261 (1405)
T KOG3630|consen 257 FLVVY 261 (1405)
T ss_pred EEEEe
Confidence 76554
No 394
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.38 E-value=0.83 Score=42.37 Aligned_cols=283 Identities=12% Similarity=0.067 Sum_probs=143.2
Q ss_pred CCceeEEeecCCeEEEecCCCCcccc--eeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154 64 NDPLLAVARKNGLTDILNPLNGDLRV--AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 64 ~g~~l~~g~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~ 141 (430)
+.+.|++|+..|.++||+...+.... .+-.. .-..+|.++..=..-. ......++...-..+.||.+.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~------~l~~PILqv~~G~F~s----~~~~~~LaVLhP~kl~vY~v~ 105 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET------QLKDPILQVECGKFVS----GSEDLQLAVLHPRKLSVYSVS 105 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE------ecCCcEEEEEeccccC----CCCcceEEEecCCEEEEEEEE
Confidence 34689999999999999985433111 11000 0124665555422111 011355666777788888885
Q ss_pred ecCcc--ccCCCcceEEeeecCCCceEEEEEcC----C-CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCc
Q 014154 142 VTKVS--AESSCSTVKSWNVCASGTIAFSKVDI----S-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPT 214 (430)
Q Consensus 142 ~~~~~--~~~~~~~i~~~~~~~~~~i~~~~~~~----~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 214 (430)
..... .+..-..-.++...-......++.-| . ..+|.+=+.||.+.+|+-+.......+... -
T Consensus 106 ~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~----------l 175 (418)
T PF14727_consen 106 LVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF----------L 175 (418)
T ss_pred ecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC----------C
Confidence 43321 00111112233333333444444433 2 467888899999999998764433333321 1
Q ss_pred ceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC--------------------Cc--ceEEEeecCCCeEE---EEecCC
Q 014154 215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ--------------------RR--PVMSFDFRETPIKA---VAEEPD 269 (430)
Q Consensus 215 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--------------------~~--~~~~~~~~~~~i~~---~~~sp~ 269 (430)
-.-.+.| .+....|++++.+..|.-|....- ++ +-.++... ..+.. +.++..
T Consensus 176 lPgPl~Y--~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlG-E~~l~i~v~~~~~~ 252 (418)
T PF14727_consen 176 LPGPLCY--CPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLG-EQALDIQVVRFSSS 252 (418)
T ss_pred CCcCeEE--eecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECC-ceeEEEEEEEcCCC
Confidence 1223466 566678888888888888865320 11 11112211 22333 333333
Q ss_pred CCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEec------CCC-CeEEEEeCCCcEEEEECCCCceeeEEEee
Q 014154 270 SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH------PTL-PIIASCGLDSYLRFWDIKTRQLLSAVFLK 342 (430)
Q Consensus 270 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~------~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 342 (430)
...+++-+ ...+.+.+. +|......+-. -.+.....|. |+. ..++.++.++++.||.= .+++....+
T Consensus 253 ~~~IvvLg-er~Lf~l~~-~G~l~~~krLd-~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l- 326 (418)
T PF14727_consen 253 ESDIVVLG-ERSLFCLKD-NGSLRFQKRLD-YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQL- 326 (418)
T ss_pred CceEEEEe-cceEEEEcC-CCeEEEEEecC-CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCC-
Confidence 33444443 345666654 55554333321 1122222221 221 24888889999999863 344444222
Q ss_pred ccccceEEeee-cc-ccccccccCCCCceEecCCCC
Q 014154 343 QHLNEVVFDSA-FA-DKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 343 ~~~~~~v~~~~-~s-~~g~~~~~~~d~~i~~~~~~~ 376 (430)
.+ ..+...++ |. .+|.+++-+.+|.+.+-=.-.
T Consensus 327 ~~-~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 327 PH-VPVALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred CC-CCEEEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 11 22212222 21 255668888889888764443
No 395
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.35 E-value=0.013 Score=53.74 Aligned_cols=104 Identities=16% Similarity=0.058 Sum_probs=65.6
Q ss_pred cCCCCEEEEEe---------CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceee
Q 014154 267 EPDSFNIYIGN---------GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337 (430)
Q Consensus 267 sp~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 337 (430)
|||+++++... ..+.+.+||+.+++....... ...+....|||+|+.++... ++.|++++..++...+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence 57887777743 246799999999876544433 46788999999999998885 6789999988774443
Q ss_pred EEEeeccccc----------------eEEeeeccccccc-c-ccCCCCceEecCCC
Q 014154 338 AVFLKQHLNE----------------VVFDSAFADKEVA-N-AAADAPMLEIQNGN 375 (430)
Q Consensus 338 ~~~~~~~~~~----------------~v~~~~~s~~g~~-~-~~~~d~~i~~~~~~ 375 (430)
+...|. .. .-..+-|||||+. + ..-++..+..+...
T Consensus 78 -lT~dg~-~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~ 131 (353)
T PF00930_consen 78 -LTTDGE-PGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP 131 (353)
T ss_dssp -SES--T-TTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE
T ss_pred -eccccc-eeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEee
Confidence 223331 11 1246779999998 3 34456666655443
No 396
>PHA02713 hypothetical protein; Provisional
Probab=96.24 E-value=0.19 Score=49.05 Aligned_cols=182 Identities=10% Similarity=0.124 Sum_probs=88.9
Q ss_pred CCCEEEEEeCC------CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC-----cEEE
Q 014154 173 SEKFSLFGGKG------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-----QVRL 241 (430)
Q Consensus 173 ~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~i 241 (430)
++...+.|+.+ ..+..||..+..-. .+.... .. ......+.+ ++.+.+.|+.++ .+..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~-~~-----R~~~~~~~~----~g~IYviGG~~~~~~~~sve~ 371 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMI-KN-----RCRFSLAVI----DDTIYAIGGQNGTNVERTIEC 371 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCc-ch-----hhceeEEEE----CCEEEEECCcCCCCCCceEEE
Confidence 55666667643 34778887665321 111100 00 011222333 677888888764 4788
Q ss_pred EECCCCCcceEEEee---cCCCeEEEEecCCCCEEEEEeCC-----------------------CcEEEEEccCCeEE--
Q 014154 242 YDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGS-----------------------GDLASVDIRTGKLL-- 293 (430)
Q Consensus 242 wd~~~~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d-----------------------~~i~iwd~~~~~~~-- 293 (430)
||..+.. ...+.. .......++ -++...+.|+.+ ..+..||..+.+-.
T Consensus 372 Ydp~~~~--W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v 447 (557)
T PHA02713 372 YTMGDDK--WKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL 447 (557)
T ss_pred EECCCCe--EEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec
Confidence 9988632 111111 111111222 256677777654 24778888776542
Q ss_pred eeeeCCCCCCeEEEEecCCCCeEEEEeCC------CcEEEEECCC-CceeeEEEeeccccceEEeeeccccccc-cccCC
Q 014154 294 GCFIGKCSGSIRSIARHPTLPIIASCGLD------SYLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD 365 (430)
Q Consensus 294 ~~~~~~~~~~v~~i~~~~~~~~l~s~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~ 365 (430)
..+... ......+.+ ++.+.+.||.+ ..+..||..+ .+-...-.+..+... .+++. -+|++ +.|+.
T Consensus 448 ~~m~~~-r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~--~~~~~-~~~~iyv~Gg~ 521 (557)
T PHA02713 448 PNFWTG-TIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA--LHTIL-HDNTIMMLHCY 521 (557)
T ss_pred CCCCcc-cccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc--ceeEE-ECCEEEEEeee
Confidence 222111 111122223 56677777754 2467899886 333222112222111 12222 26666 88888
Q ss_pred CC--ceEecCCC
Q 014154 366 AP--MLEIQNGN 375 (430)
Q Consensus 366 d~--~i~~~~~~ 375 (430)
++ .+..||..
T Consensus 522 ~~~~~~e~yd~~ 533 (557)
T PHA02713 522 ESYMLQDTFNVY 533 (557)
T ss_pred cceeehhhcCcc
Confidence 88 44445443
No 397
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.01 E-value=1 Score=39.87 Aligned_cols=151 Identities=12% Similarity=0.089 Sum_probs=81.2
Q ss_pred cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE-eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEcc-CCe
Q 014154 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR-TGK 291 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~-~~~ 291 (430)
..+..+.. .+++.+++++.....+.-||.-... -... ......|.++.|+|++.+.+++ ..|.|++=+.. ...
T Consensus 145 gs~~~~~r--~~dG~~vavs~~G~~~~s~~~G~~~--w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 145 GSINDITR--SSDGRYVAVSSRGNFYSSWDPGQTT--WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp --EEEEEE---TTS-EEEEETTSSEEEEE-TT-SS---EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred ceeEeEEE--CCCCcEEEEECcccEEEEecCCCcc--ceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 45777776 7899988887666666778865321 2222 2235789999999998776655 88888887622 222
Q ss_pred EEee----eeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCC
Q 014154 292 LLGC----FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAP 367 (430)
Q Consensus 292 ~~~~----~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~ 367 (430)
.... +... .-.+..++|.+++...++|+ .|.+ +.....|+.-............++.+.|.++.+-.+.+.+|
T Consensus 220 ~w~~~~~~~~~~-~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G 296 (302)
T PF14870_consen 220 TWSEPIIPIKTN-GYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDG 296 (302)
T ss_dssp EE---B-TTSS---S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STT
T ss_pred ccccccCCcccC-ceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCc
Confidence 1111 1111 33588999999887777665 5544 34555565544421112334456888998776667777788
Q ss_pred ceEec
Q 014154 368 MLEIQ 372 (430)
Q Consensus 368 ~i~~~ 372 (430)
.|.-|
T Consensus 297 ~ll~~ 301 (302)
T PF14870_consen 297 VLLRY 301 (302)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77655
No 398
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.95 E-value=0.61 Score=44.15 Aligned_cols=120 Identities=12% Similarity=-0.010 Sum_probs=71.1
Q ss_pred CceEEEEEcCC----CCEEEEEeCCCeEEEEECCC-----CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEE
Q 014154 163 GTIAFSKVDIS----EKFSLFGGKGVEVNVWDLDK-----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG 233 (430)
Q Consensus 163 ~~i~~~~~~~~----~~~l~~~~~d~~i~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 233 (430)
..|..+.|.|- ...|++......|.+|.+.. .+.+..-..+-.+.+ +.-...+.| +|....|++-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~----pvLpQGCVW--HPk~~iL~VL 130 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPF----PVLPQGCVW--HPKKAILTVL 130 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCc----ccCCCcccc--cCCCceEEEE
Confidence 46888999883 34555667777999999852 222222111111111 122345678 6777777766
Q ss_pred eCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC-CcEEEEEcc
Q 014154 234 TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-GDLASVDIR 288 (430)
Q Consensus 234 ~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-~~i~iwd~~ 288 (430)
.....-.+++.+.....+..--...+.|.|.+|.+||+.|+++-.. =.-++||-.
T Consensus 131 T~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 131 TARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 5555545666665443333222345789999999999888766433 345678743
No 399
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.90 E-value=1 Score=38.98 Aligned_cols=145 Identities=11% Similarity=0.059 Sum_probs=85.2
Q ss_pred ceEEEEEcCCCCEEEEEe---CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEE
Q 014154 164 TIAFSKVDISEKFSLFGG---KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 240 (430)
.+...++++++..++... ....++++......... +.. ..+....| ++++...+....+...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-~~g-----------~~l~~PS~--d~~g~~W~v~~~~~~~~ 90 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-LTG-----------GSLTRPSW--DPDGWVWTVDDGSGGVR 90 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-ccC-----------Cccccccc--cCCCCEEEEEcCCCceE
Confidence 678889999998887655 33345555443221111 111 23555677 77777776666666666
Q ss_pred EEE-CCCCCcceEEEeecC--CCeEEEEecCCCCEEEEEe---CCCcEEEEEcc---CC--e----EEeeeeCCCCCCeE
Q 014154 241 LYD-TSAQRRPVMSFDFRE--TPIKAVAEEPDSFNIYIGN---GSGDLASVDIR---TG--K----LLGCFIGKCSGSIR 305 (430)
Q Consensus 241 iwd-~~~~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~---~d~~i~iwd~~---~~--~----~~~~~~~~~~~~v~ 305 (430)
++. ...+........... ..|..+.+||||..++... .++.|.+--+. .+ . .+...... ...+.
T Consensus 91 ~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~-~~~v~ 169 (253)
T PF10647_consen 91 VVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL-LSDVT 169 (253)
T ss_pred EEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc-cCcce
Confidence 663 333332222222221 2899999999998887665 34667765443 22 1 11112122 45789
Q ss_pred EEEecCCCCeEEEEeCCC
Q 014154 306 SIARHPTLPIIASCGLDS 323 (430)
Q Consensus 306 ~i~~~~~~~~l~s~~~dg 323 (430)
.+.|.+++.+++.+...+
T Consensus 170 ~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 170 DVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred eeeecCCCEEEEEeCCCC
Confidence 999999998777665443
No 400
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.84 E-value=1.1 Score=44.25 Aligned_cols=155 Identities=12% Similarity=0.094 Sum_probs=91.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeE------eeCCCC-----CCCCC--CcCCcceeEEEEeecCCCCEEEEEeCCCcEE
Q 014154 174 EKFSLFGGKGVEVNVWDLDKCEKIW------TAKPPP-----KNSLG--IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (430)
Q Consensus 174 ~~~l~~~~~d~~i~~~d~~~~~~~~------~~~~~~-----~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 240 (430)
.++++++. .+.|.||++....... .+.... ..... ...+..|+.+....--+...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66777655 5589999986432211 110000 00000 0022345555442123456899999999999
Q ss_pred EEECCC-------C------------CcceEEEeecCCCeEEEEec--CCCCEEEEEeCCCcEEEEEccCC--eEEeeee
Q 014154 241 LYDTSA-------Q------------RRPVMSFDFRETPIKAVAEE--PDSFNIYIGNGSGDLASVDIRTG--KLLGCFI 297 (430)
Q Consensus 241 iwd~~~-------~------------~~~~~~~~~~~~~i~~~~~s--p~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~ 297 (430)
+|.+.+ . -.|...+.. ...+++++++ ...++||+++....|.||-+... +....-.
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 996531 0 012222332 3578899998 78889999998888888765432 1111101
Q ss_pred CCCCCCeEEEEecCCC---C---eEEEEeCCCcEEEEEC
Q 014154 298 GKCSGSIRSIARHPTL---P---IIASCGLDSYLRFWDI 330 (430)
Q Consensus 298 ~~~~~~v~~i~~~~~~---~---~l~s~~~dg~i~iwd~ 330 (430)
..+...|.+|.|-++. . +|++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 0125578899997643 2 7888999999999887
No 401
>PHA02713 hypothetical protein; Provisional
Probab=95.66 E-value=0.26 Score=48.08 Aligned_cols=149 Identities=13% Similarity=0.165 Sum_probs=78.6
Q ss_pred CCCEEEEEeCCC-----eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC----------
Q 014154 173 SEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---------- 237 (430)
Q Consensus 173 ~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---------- 237 (430)
++...+.|+.++ ++..||..+.+ +.....-.... .....+++ ++.+.+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~--W~~~~~mp~~r-----~~~~~~~~----~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDK--WKMLPDMPIAL-----SSYGMCVL----DQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCe--EEECCCCCccc-----ccccEEEE----CCEEEEEeCCCccccccccccc
Confidence 566667777653 47788887643 22211110000 11222333 677777777652
Q ss_pred -------------cEEEEECCCCCc-ceEEEeecCCCeEEEEecCCCCEEEEEeCC------CcEEEEEccC-Ce--EEe
Q 014154 238 -------------QVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGS------GDLASVDIRT-GK--LLG 294 (430)
Q Consensus 238 -------------~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d------~~i~iwd~~~-~~--~~~ 294 (430)
.+..||+.+.+= .+..+....... +++ .-+++..+.|+.+ ..+..||..+ .+ .+.
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 477788876321 111111111111 122 2246666677654 2467899887 44 333
Q ss_pred eeeCCCCCCeEEEEecCCCCeEEEEeCCC--cEEEEECCCCceee
Q 014154 295 CFIGKCSGSIRSIARHPTLPIIASCGLDS--YLRFWDIKTRQLLS 337 (430)
Q Consensus 295 ~~~~~~~~~v~~i~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~ 337 (430)
.+... ......+.+ ++.+.++||.|+ .+..||..+.+-..
T Consensus 498 ~m~~~-r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 498 TTESR-LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred ccCcc-cccceeEEE--CCEEEEEeeecceeehhhcCcccccccc
Confidence 34332 223333334 778889999888 77888887766544
No 402
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.64 E-value=1.4 Score=38.68 Aligned_cols=256 Identities=13% Similarity=0.054 Sum_probs=126.8
Q ss_pred CCCCCCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccc
Q 014154 9 CPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR 88 (430)
Q Consensus 9 ~~~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~ 88 (430)
|+.--..+|+.|.++| +.+++.... .+..+... ...+.-+.+. |+-+.|++- .|+.+.++++..-...
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~~~-~~~~~i~~-----~~~I~ql~vl----~~~~~llvL-sd~~l~~~~L~~l~~~ 69 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLSDP-SKPTRILK-----LSSITQLSVL----PELNLLLVL-SDGQLYVYDLDSLEPV 69 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEecCC-ccceeEee-----cceEEEEEEe----cccCEEEEE-cCCccEEEEchhhccc
Confidence 3333457899999999 889988332 11111111 1113333332 333344443 4599999998755443
Q ss_pred ceeec-cCCCC--CCCCCCceEEEEEee-cCcccccccCceEEEEccCCeeEEEEeeecCccccCCC-cceEEeeecCCC
Q 014154 89 VAISN-AGDSG--AQPEDDGIVGLHLFK-RQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSC-STVKSWNVCASG 163 (430)
Q Consensus 89 ~~~~~-~~~~~--~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~-~~i~~~~~~~~~ 163 (430)
..... ..+.. .........+..++. ... ......+.......+.++....... .. ..++-+.+ ..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~----~~~~~~L~va~kk~i~i~~~~~~~~----~f~~~~ke~~l--p~ 139 (275)
T PF00780_consen 70 STSAPLAFPKSRSLPTKLPETKGVSFFAVNGG----HEGSRRLCVAVKKKILIYEWNDPRN----SFSKLLKEISL--PD 139 (275)
T ss_pred cccccccccccccccccccccCCeeEEeeccc----cccceEEEEEECCEEEEEEEECCcc----cccceeEEEEc--CC
Confidence 31110 00000 000000111122222 000 0113444455555777777654211 11 23333333 47
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCC---CCCcCCcceeEEEEeecCCCCEEEEEeCCCcEE
Q 014154 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS---LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 240 (430)
.+..++|. ++.++.|..+ ...+.|+.++....-+....... .......++..+.. +++.+|++ .+..-.
T Consensus 140 ~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~Ll~--~~~~g~ 211 (275)
T PF00780_consen 140 PPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL---SDNEFLLC--YDNIGV 211 (275)
T ss_pred CcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe---CCceEEEE--ecceEE
Confidence 78888887 6777777765 58888998765543322111100 00001122333333 34555654 243444
Q ss_pred EEECCCCCcce-EEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC
Q 014154 241 LYDTSAQRRPV-MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299 (430)
Q Consensus 241 iwd~~~~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 299 (430)
+.|... +... ..+... ....++++. ..+|++.+. +.|.||++.++++++.+...
T Consensus 212 fv~~~G-~~~r~~~i~W~-~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 212 FVNKNG-EPSRKSTIQWS-SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EEcCCC-CcCcccEEEcC-CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 445543 3222 244433 355666664 347777655 55999999999999988864
No 403
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.60 E-value=1.7 Score=39.46 Aligned_cols=177 Identities=15% Similarity=0.132 Sum_probs=88.2
Q ss_pred EEcCCCCEEEEEeC---CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECC
Q 014154 169 KVDISEKFSLFGGK---GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (430)
Q Consensus 169 ~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 245 (430)
+|.++|+.|+.++. ...+++.|+.+++...--...... ...... +++.+.++.......|+-.|+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~---------~~g~~~--s~~~~~~~Yv~~~~~l~~vdL~ 110 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDN---------TFGGFL--SPDDRALYYVKNGRSLRRVDLD 110 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B----------TTT-EE---TTSSEEEEEETTTEEEEEETT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCC---------ccceEE--ecCCCeEEEEECCCeEEEEECC
Confidence 45678877776655 446888899888766543332211 112233 6777777766667789999999
Q ss_pred CCCcceEEEeecCCCeEEEEe--cCCCCEEEEEe---C-------------------CCcEEEEEccCCeEEeeeeCCCC
Q 014154 246 AQRRPVMSFDFRETPIKAVAE--EPDSFNIYIGN---G-------------------SGDLASVDIRTGKLLGCFIGKCS 301 (430)
Q Consensus 246 ~~~~~~~~~~~~~~~i~~~~~--sp~~~~l~~~~---~-------------------d~~i~iwd~~~~~~~~~~~~~~~ 301 (430)
+.+. ...+......+-...| +.++..++-.- . ...|.-.|+.+|+....+.. .
T Consensus 111 T~e~-~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~--~ 187 (386)
T PF14583_consen 111 TLEE-RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED--T 187 (386)
T ss_dssp T--E-EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE--S
T ss_pred cCcE-EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec--C
Confidence 8653 3445555555544555 34555543221 1 13466678888887666664 5
Q ss_pred CCeEEEEecCCCCeEEEEeCCC-----cEEEEECCC-CceeeEEEeeccccceEEeeeccccccc
Q 014154 302 GSIRSIARHPTLPIIASCGLDS-----YLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 302 ~~v~~i~~~~~~~~l~s~~~dg-----~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 360 (430)
..+..+.|+|...-+++=+..| .-|||-+++ +.....+.-. .....+..=-|.|||..
T Consensus 188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDGST 251 (386)
T ss_dssp S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-
T ss_pred ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCCCE
Confidence 6889999999775555443322 136665543 3333332111 12344555667888775
No 404
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.49 E-value=1.5 Score=37.99 Aligned_cols=140 Identities=16% Similarity=0.071 Sum_probs=83.2
Q ss_pred ceeEEEEeecCCCCEEEEEe---CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEE-ccCC
Q 014154 215 WFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD-IRTG 290 (430)
Q Consensus 215 ~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd-~~~~ 290 (430)
.+.+.+. ++++..++... ....++++.... .....+.+ ..+....|++++...+....+...+++. ...+
T Consensus 25 ~~~s~Av--S~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAV--SPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEE--CCCCCeEEEEEEcCCCCEEEEEcCCC--cceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 4677788 88998777655 333455555443 22233333 3788889999987777766666667663 3333
Q ss_pred eEE-eeeeCCC-CCCeEEEEecCCCCeEEEEe---CCCcEEEEECC---CC--cee-eEEEeeccccceEEeeecccccc
Q 014154 291 KLL-GCFIGKC-SGSIRSIARHPTLPIIASCG---LDSYLRFWDIK---TR--QLL-SAVFLKQHLNEVVFDSAFADKEV 359 (430)
Q Consensus 291 ~~~-~~~~~~~-~~~v~~i~~~~~~~~l~s~~---~dg~i~iwd~~---~~--~~~-~~~~~~~~~~~~v~~~~~s~~g~ 359 (430)
... ..+.... ...|..+.+||||..++... .++.|.|=-+. .+ ..+ ..+.+.......+.+++|.+++.
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 321 1222110 22899999999998876665 35677776543 23 111 11111111134568999999999
Q ss_pred c
Q 014154 360 A 360 (430)
Q Consensus 360 ~ 360 (430)
+
T Consensus 179 L 179 (253)
T PF10647_consen 179 L 179 (253)
T ss_pred E
Confidence 8
No 405
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.49 E-value=0.74 Score=42.44 Aligned_cols=140 Identities=15% Similarity=0.117 Sum_probs=76.8
Q ss_pred cceeEEEEeecCCCCEEEEEe-----------CCC-cEEEEECCCC--Cc-ceEEEeecCCCeEEEEecCCCCEEEEEeC
Q 014154 214 TWFTSAAFLSIDDHRKFVAGT-----------NDH-QVRLYDTSAQ--RR-PVMSFDFRETPIKAVAEEPDSFNIYIGNG 278 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~s~~-----------~dg-~i~iwd~~~~--~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 278 (430)
.....++| .++|+++++.. ..+ .|.+++-.++ .. ....+.........+++.+++ |+++..
T Consensus 14 ~~P~~ia~--d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~ 89 (367)
T TIGR02604 14 RNPIAVCF--DERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATP 89 (367)
T ss_pred CCCceeeE--CCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCC
Confidence 34677888 88888777653 223 6777765432 21 123333233456889999888 444444
Q ss_pred CCcEEEEEccC-----Ce--EE-eeeeCC---CCCCeEEEEecCCCCeEEEEeCC-------------------CcEEEE
Q 014154 279 SGDLASVDIRT-----GK--LL-GCFIGK---CSGSIRSIARHPTLPIIASCGLD-------------------SYLRFW 328 (430)
Q Consensus 279 d~~i~iwd~~~-----~~--~~-~~~~~~---~~~~v~~i~~~~~~~~l~s~~~d-------------------g~i~iw 328 (430)
...+++.|... ++ .+ ..+... +......+.|.|||.+.++-+.. |.|.-+
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 44333445431 12 12 223221 12357789999999876655421 345555
Q ss_pred ECCCCceeeEEEeeccccceEEeeecccccccc
Q 014154 329 DIKTRQLLSAVFLKQHLNEVVFDSAFADKEVAN 361 (430)
Q Consensus 329 d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~ 361 (430)
+..+++. ..+ ..+. .. .+.++|+++|.+.
T Consensus 170 ~pdg~~~-e~~-a~G~-rn-p~Gl~~d~~G~l~ 198 (367)
T TIGR02604 170 NPDGGKL-RVV-AHGF-QN-PYGHSVDSWGDVF 198 (367)
T ss_pred ecCCCeE-EEE-ecCc-CC-CccceECCCCCEE
Confidence 5554432 222 2333 33 3789999999883
No 406
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.37 E-value=1.5 Score=42.84 Aligned_cols=112 Identities=15% Similarity=0.133 Sum_probs=74.0
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC
Q 014154 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 246 (430)
-+.-+.-++..++-+....+.|||...+....+..-. ....|..+.|.+.|+++.+++.+..+.|.+|--..
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~--------~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R 105 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFS--------EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLR 105 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeec--------CCCceeeceeeecCCCCEEEEEEcCcEEEEEEccc
Confidence 3444444555555555567999999887754432211 12679999999899999999999999999986421
Q ss_pred --------CCcceEEE--eecC-CCeEEEEecCCCCEEEEEeCCCcEEEEEcc
Q 014154 247 --------QRRPVMSF--DFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (430)
Q Consensus 247 --------~~~~~~~~--~~~~-~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 288 (430)
...++..+ ..++ .+|.+..|.++|.+++.+ ++.+.|+|-.
T Consensus 106 ~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 106 YDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred hhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 11223333 2333 578999999998655433 4678888753
No 407
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.30 E-value=2.6 Score=41.31 Aligned_cols=147 Identities=18% Similarity=0.208 Sum_probs=77.2
Q ss_pred CCCEEEEEeCCCe-----EEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC------cEEE
Q 014154 173 SEKFSLFGGKGVE-----VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH------QVRL 241 (430)
Q Consensus 173 ~~~~l~~~~~d~~-----i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg------~i~i 241 (430)
+|...++|+.||. +-.||..+.+- ........ .....-.+.+ ++.+.++|+.++ ++..
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W--~~va~m~~-----~r~~~gv~~~----~g~iYi~GG~~~~~~~l~sve~ 448 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKW--TPVAPMLT-----RRSGHGVAVL----GGKLYIIGGGDGSSNCLNSVEC 448 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcc--cccCCCCc-----ceeeeEEEEE----CCEEEEEcCcCCCccccceEEE
Confidence 5777788888865 55666654322 11111000 0022223333 788888888554 5678
Q ss_pred EECCCCCc-ceEEEeecCCCeEEEEecCCCCEEEEEeCCCc-----EEEEEccCCeEEee--eeCCCCCCeEEEEecCCC
Q 014154 242 YDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-----LASVDIRTGKLLGC--FIGKCSGSIRSIARHPTL 313 (430)
Q Consensus 242 wd~~~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~-----i~iwd~~~~~~~~~--~~~~~~~~v~~i~~~~~~ 313 (430)
||..+..- .+..+....... .++. -++.+.+.|+.|+. |..||..+.+-... +... ...+..+.+ ++
T Consensus 449 YDP~t~~W~~~~~M~~~R~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~-rs~~g~~~~--~~ 523 (571)
T KOG4441|consen 449 YDPETNTWTLIAPMNTRRSGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP-RSAVGVVVL--GG 523 (571)
T ss_pred EcCCCCceeecCCcccccccc-eEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc-cccccEEEE--CC
Confidence 88886431 011111111111 1222 25667788887763 77899887765332 2222 222333333 66
Q ss_pred CeEEEEeCCC-----cEEEEECCCCce
Q 014154 314 PIIASCGLDS-----YLRFWDIKTRQL 335 (430)
Q Consensus 314 ~~l~s~~~dg-----~i~iwd~~~~~~ 335 (430)
...+.|+.|| +|..||..+.+-
T Consensus 524 ~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 524 KLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred EEEEEecccCccccceeEEcCCCCCce
Confidence 7778888876 466676665443
No 408
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.29 E-value=0.46 Score=47.44 Aligned_cols=76 Identities=20% Similarity=0.190 Sum_probs=51.9
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEEccC---------CeE--Ee-ee-------eCCCCCCeEEEEecCC---CCeE
Q 014154 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRT---------GKL--LG-CF-------IGKCSGSIRSIARHPT---LPII 316 (430)
Q Consensus 259 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~---------~~~--~~-~~-------~~~~~~~v~~i~~~~~---~~~l 316 (430)
..|..|.++|+|.+|+..+..|.+.+.=.+. |+. .. .+ ..+....|..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 3678899999999999988776544332211 111 11 11 1122568899999996 4788
Q ss_pred EEEeCCCcEEEEECCCCc
Q 014154 317 ASCGLDSYLRFWDIKTRQ 334 (430)
Q Consensus 317 ~s~~~dg~i~iwd~~~~~ 334 (430)
+.-..|+++|+||+...+
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 888899999999997543
No 409
>PHA03098 kelch-like protein; Provisional
Probab=95.24 E-value=1.2 Score=43.52 Aligned_cols=183 Identities=13% Similarity=0.046 Sum_probs=85.9
Q ss_pred CCCEEEEEeCCC------eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC-----CcEEE
Q 014154 173 SEKFSLFGGKGV------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRL 241 (430)
Q Consensus 173 ~~~~l~~~~~d~------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~i 241 (430)
++..++.|+.++ .+..||..+.+-.. +...... ......+.+ ++.+++.|+.+ ..+..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~------R~~~~~~~~----~~~lyv~GG~~~~~~~~~v~~ 362 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYP------RKNPGVTVF----NNRIYVIGGIYNSISLNTVES 362 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcc------cccceEEEE----CCEEEEEeCCCCCEecceEEE
Confidence 455666666532 47778877654321 1111100 011222233 67777888765 34778
Q ss_pred EECCCCCcceEEEe---ecCCCeEEEEecCCCCEEEEEeCC------CcEEEEEccCCeEEe--eeeCCCCCCeEEEEec
Q 014154 242 YDTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGS------GDLASVDIRTGKLLG--CFIGKCSGSIRSIARH 310 (430)
Q Consensus 242 wd~~~~~~~~~~~~---~~~~~i~~~~~sp~~~~l~~~~~d------~~i~iwd~~~~~~~~--~~~~~~~~~v~~i~~~ 310 (430)
||+.+.. ..... ...... +++ .-+++..+.|+.+ ..+..||+.+.+-.. .+... ......+.
T Consensus 363 yd~~~~~--W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r~~~~~~~-- 435 (534)
T PHA03098 363 WKPGESK--WREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS-HYGGCAIY-- 435 (534)
T ss_pred EcCCCCc--eeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcc-ccCceEEE--
Confidence 8887633 11111 111111 122 2356666666632 458899988765422 11111 11112222
Q ss_pred CCCCeEEEEeCCC--------cEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCC-----CceEecCCCC
Q 014154 311 PTLPIIASCGLDS--------YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADA-----PMLEIQNGND 376 (430)
Q Consensus 311 ~~~~~l~s~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d-----~~i~~~~~~~ 376 (430)
.++.+++.||.++ .+.+||..+.+-...-.+... ......+.+ ++.+ +.|+.+ +.+.+||...
T Consensus 436 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 436 HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCC
Confidence 3566667776432 388899887654322111111 111111222 5666 777654 3566666544
No 410
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.01 E-value=1.8 Score=36.09 Aligned_cols=96 Identities=10% Similarity=-0.015 Sum_probs=60.8
Q ss_pred eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCC-----ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG-----TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 199 (430)
..+.-+.+.++.-|+...... ...+.-.++++...+ ..-.++++.+|++.++.-..++|...|..+|+.+.+
T Consensus 172 fY~iDsln~~V~a~dyd~~tG---~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~e 248 (310)
T KOG4499|consen 172 FYYIDSLNYEVDAYDYDCPTG---DLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLE 248 (310)
T ss_pred EEEEccCceEEeeeecCCCcc---cccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEE
Confidence 445555666666676543321 111222344444321 223455667888888888889999999999999999
Q ss_pred eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEE
Q 014154 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG 233 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 233 (430)
++.+. ..|++++|- .++-..+++.
T Consensus 249 iklPt---------~qitsccFg-Gkn~d~~yvT 272 (310)
T KOG4499|consen 249 IKLPT---------PQITSCCFG-GKNLDILYVT 272 (310)
T ss_pred EEcCC---------CceEEEEec-CCCccEEEEE
Confidence 88765 679999994 3443444443
No 411
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.87 E-value=3.2 Score=38.31 Aligned_cols=143 Identities=13% Similarity=0.031 Sum_probs=76.0
Q ss_pred CceEEEEEcCCCCEEEEEe-----------CCC-eEEEEECCC--Cee--eEeeCCCCCCCCCCcCCcceeEEEEeecCC
Q 014154 163 GTIAFSKVDISEKFSLFGG-----------KGV-EVNVWDLDK--CEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD 226 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~-----------~d~-~i~~~d~~~--~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 226 (430)
.....|+|.++|+++++-. ..+ .|.+++-.+ +.. ...+.... .....+++ .++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l---------~~p~Gi~~--~~~ 82 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL---------SMVTGLAV--AVG 82 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC---------CCccceeE--ecC
Confidence 3456788999888776642 122 666665432 221 11221111 33577788 677
Q ss_pred CCEEEEEeCCCcEEEEECCCC-----Cc--ceEEEee----cCCCeEEEEecCCCCEEEEEeCC----------------
Q 014154 227 HRKFVAGTNDHQVRLYDTSAQ-----RR--PVMSFDF----RETPIKAVAEEPDSFNIYIGNGS---------------- 279 (430)
Q Consensus 227 ~~~l~s~~~dg~i~iwd~~~~-----~~--~~~~~~~----~~~~i~~~~~sp~~~~l~~~~~d---------------- 279 (430)
+ +++ +......++.|.... +. .+..+.. +......++|.|||.+.++-+..
T Consensus 83 G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~ 160 (367)
T TIGR02604 83 G-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQ 160 (367)
T ss_pred C-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccc
Confidence 7 444 444433334454321 11 1111221 12346789999999766644421
Q ss_pred ---CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe
Q 014154 280 ---GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 280 ---~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~ 320 (430)
+.|.-+|...++.. .+... -.....++|+|+|.++++-.
T Consensus 161 ~~~g~i~r~~pdg~~~e-~~a~G-~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 161 GLGGGLFRYNPDGGKLR-VVAHG-FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccCceEEEEecCCCeEE-EEecC-cCCCccceECCCCCEEEEcc
Confidence 44566666555432 33322 23457899999998876644
No 412
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.82 E-value=0.13 Score=30.01 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=25.4
Q ss_pred CCeEEEEecCCCC---EEEEEeCCCcEEEEEccC
Q 014154 259 TPIKAVAEEPDSF---NIYIGNGSGDLASVDIRT 289 (430)
Q Consensus 259 ~~i~~~~~sp~~~---~l~~~~~d~~i~iwd~~~ 289 (430)
+.|.++.|+|... +|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998554 777777779999999995
No 413
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.43 E-value=1.4 Score=41.82 Aligned_cols=148 Identities=10% Similarity=0.061 Sum_probs=81.4
Q ss_pred cceeEEEEeecCCCCEEEEEe---CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCC----CEEEEEeCCCcEEEEE
Q 014154 214 TWFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS----FNIYIGNGSGDLASVD 286 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~----~~l~~~~~d~~i~iwd 286 (430)
.++..++| . ||+.++-.. .+|.+++=|.. .+..| ..|..+.|.|-+ ..|++.-....|.+|.
T Consensus 20 HPvhGlaW--T-DGkqVvLT~L~l~~gE~kfGds~----viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq 88 (671)
T PF15390_consen 20 HPVHGLAW--T-DGKQVVLTDLQLHNGEPKFGDSK----VIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ 88 (671)
T ss_pred ccccceEe--c-CCCEEEEEeeeeeCCccccCCcc----Eeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence 45788899 3 566544322 23333332221 12222 458899998853 3455556778899998
Q ss_pred cc-----CCeEEe----eeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccc
Q 014154 287 IR-----TGKLLG----CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK 357 (430)
Q Consensus 287 ~~-----~~~~~~----~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 357 (430)
+. +++.+. ++.....--...+.|||....|+.-.....=.+++++.....-...+ ...+.|.+.+|.+|
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi--~~~G~IhCACWT~D 166 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI--KTSGLIHCACWTKD 166 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec--cCCceEEEEEecCc
Confidence 75 222221 22111011224678999998887766555444556553322222223 33466899999999
Q ss_pred ccccccCCCCce--EecCC
Q 014154 358 EVANAAADAPML--EIQNG 374 (430)
Q Consensus 358 g~~~~~~~d~~i--~~~~~ 374 (430)
|+.++..-...+ ++||.
T Consensus 167 G~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 167 GQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred CCEEEEEeCCeEEEEEecC
Confidence 998333333355 45553
No 414
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.40 E-value=2.9 Score=35.81 Aligned_cols=210 Identities=10% Similarity=-0.049 Sum_probs=127.8
Q ss_pred CCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCE
Q 014154 150 SCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK 229 (430)
Q Consensus 150 ~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 229 (430)
.+.....|-+..+..-..++-.|+|..-+++...+.|--.|..+++....--... .....+.. .|++..
T Consensus 49 ~~~s~~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~G---------a~Phgiv~--gpdg~~ 117 (353)
T COG4257 49 PDGSSAEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSG---------ASPHGIVV--GPDGSA 117 (353)
T ss_pred CCCccceeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCC---------CCCceEEE--CCCCCe
Confidence 4556667777777888889999999999998888888888888887654322221 22344455 677776
Q ss_pred EEEEeCCCcEEEEECCCCCcceEEEee----cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeE
Q 014154 230 FVAGTNDHQVRLYDTSAQRRPVMSFDF----RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR 305 (430)
Q Consensus 230 l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 305 (430)
-++-+.. -|.-.|.++.+ +..+.. .........|.+.|++-+++... .---.|..+ ..+..+........+
T Consensus 118 Witd~~~-aI~R~dpkt~e--vt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa~-~~i~vfpaPqG~gpy 192 (353)
T COG4257 118 WITDTGL-AIGRLDPKTLE--VTRFPLPLEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPAR-NVISVFPAPQGGGPY 192 (353)
T ss_pred eEecCcc-eeEEecCcccc--eEEeecccccCCCcccceeeCCCccEEEeeccc-cceecCccc-CceeeeccCCCCCCc
Confidence 6653333 45555555433 333322 23567788999999998888632 111112211 223344433245668
Q ss_pred EEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 306 SIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 306 ~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
.|+..|+|..-++.-.++.|-..|..++... .+............+--+|.|.. ++.-..+.++.|+...
T Consensus 193 Gi~atpdGsvwyaslagnaiaridp~~~~ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 193 GICATPDGSVWYASLAGNAIARIDPFAGHAE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred ceEECCCCcEEEEeccccceEEcccccCCcc-eecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 8999999998887777778888888776322 22111111112234455667777 7766666776666544
No 415
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.26 E-value=3.3 Score=35.89 Aligned_cols=175 Identities=6% Similarity=0.006 Sum_probs=97.2
Q ss_pred eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC
Q 014154 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 133 (430)
+.++.| +|+.+.|++......-.||=..+|+.+.++..- +- ...-.+.+.... ...++--.+.
T Consensus 88 vS~LTy--np~~rtLFav~n~p~~iVElt~~GdlirtiPL~----g~---~DpE~Ieyig~n--------~fvi~dER~~ 150 (316)
T COG3204 88 VSSLTY--NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT----GF---SDPETIEYIGGN--------QFVIVDERDR 150 (316)
T ss_pred ccceee--CCCcceEEEecCCCceEEEEecCCceEEEeccc----cc---CChhHeEEecCC--------EEEEEehhcc
Confidence 445555 677777888777777667766689888887641 00 011112333221 2334444556
Q ss_pred eeEEEEeeecCccccCCCcceEEeeecC-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCC-Cc
Q 014154 134 KASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG-IF 211 (430)
Q Consensus 134 ~~~v~~~~~~~~~~~~~~~~i~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~-~~ 211 (430)
.+.++.+..........+-.+.+=...+ +.....++|+|....|+.+-.-.-+.||.+.................. -.
T Consensus 151 ~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~ 230 (316)
T COG3204 151 ALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL 230 (316)
T ss_pred eEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccce
Confidence 6777766544321111111222222222 456778999999999998888888888877633211111111000000 00
Q ss_pred CCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC
Q 014154 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 212 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 246 (430)
-...|.++.|. .+.+.+|+-+.+++.+.-.|...
T Consensus 231 f~~DvSgl~~~-~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 231 FVLDVSGLEFN-AITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred Eeeccccceec-CCCCcEEEEecCCceEEEEecCC
Confidence 01346778884 44667888888888888888875
No 416
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.20 E-value=4.8 Score=37.51 Aligned_cols=26 Identities=0% Similarity=-0.183 Sum_probs=21.1
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECC
Q 014154 167 FSKVDISEKFSLFGGKGVEVNVWDLD 192 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~d~~i~~~d~~ 192 (430)
.+.+.+..+.|++++.+..|..|...
T Consensus 179 Pl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 179 PLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred CeEEeecCCEEEEecCceeEEEecHH
Confidence 46777888889999988889888763
No 417
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.16 E-value=0.47 Score=39.95 Aligned_cols=70 Identities=14% Similarity=-0.013 Sum_probs=51.0
Q ss_pred ecCCCCEEEEEeCCCcEEEEEccCCeEEeee-------eC------CCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154 266 EEPDSFNIYIGNGSGDLASVDIRTGKLLGCF-------IG------KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 266 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------~~------~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~ 332 (430)
+..++.+|++-+.+|.+++||+.+++.+..- .. .....|..+.++.+|.-|++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3456889999999999999999998765332 11 1246788888888887776664 57889998764
Q ss_pred Ccee
Q 014154 333 RQLL 336 (430)
Q Consensus 333 ~~~~ 336 (430)
+.-+
T Consensus 97 ~~W~ 100 (219)
T PF07569_consen 97 GCWI 100 (219)
T ss_pred ceeE
Confidence 4433
No 418
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.15 E-value=0.74 Score=45.34 Aligned_cols=125 Identities=15% Similarity=0.074 Sum_probs=75.7
Q ss_pred CceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCe-----e---eEe--eCCCCCCCCCCcCCcceeEEEEeecCCCCEE
Q 014154 163 GTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCE-----K---IWT--AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF 230 (430)
Q Consensus 163 ~~i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~-----~---~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 230 (430)
..|..|.... +...|+.+.+||.|.+|.+++-. . ... ........+.......+.+++++.....++|
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEE
Confidence 3455554443 56788999999999999774210 0 000 0000011122233467888998433677788
Q ss_pred EEEeCCCcEEEEECCCC--CcceEEEeecCCCeEEEEecCCC-----C-EEEEEeCCCcEEEEEc
Q 014154 231 VAGTNDHQVRLYDTSAQ--RRPVMSFDFRETPIKAVAEEPDS-----F-NIYIGNGSGDLASVDI 287 (430)
Q Consensus 231 ~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~sp~~-----~-~l~~~~~d~~i~iwd~ 287 (430)
|+++....|.||-+... +.....-..|...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888888755431 21111111245678899996543 2 7788888999999887
No 419
>PRK13684 Ycf48-like protein; Provisional
Probab=94.14 E-value=4.4 Score=36.82 Aligned_cols=155 Identities=11% Similarity=0.009 Sum_probs=88.8
Q ss_pred cceeEEEEeecCCCCEEEEEeCCCcEEE-EECCCCCcceEEEe-ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe
Q 014154 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRL-YDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK 291 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 291 (430)
..+..+.+ .+++.++++ +..|.+.. +|-. ++. ..... .-...++++.+.++++.+++| ..|.+++=....+.
T Consensus 173 g~~~~i~~--~~~g~~v~~-g~~G~i~~s~~~g-g~t-W~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~ 246 (334)
T PRK13684 173 GVVRNLRR--SPDGKYVAV-SSRGNFYSTWEPG-QTA-WTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE 246 (334)
T ss_pred ceEEEEEE--CCCCeEEEE-eCCceEEEEcCCC-CCe-EEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC
Confidence 45778888 677766655 45565443 2222 121 22222 234578999999999877765 56766432233333
Q ss_pred EEeeeeCC---CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCc
Q 014154 292 LLGCFIGK---CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPM 368 (430)
Q Consensus 292 ~~~~~~~~---~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~ 368 (430)
.-.....+ ....+..+.+.|++..++ ++.+|.|. .....++.-.............+.+.|..+++...++..|.
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~ 324 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGV 324 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCce
Confidence 22111111 123578899999877555 45677554 44444444333211112233467888888888888888899
Q ss_pred eEecCCCC
Q 014154 369 LEIQNGND 376 (430)
Q Consensus 369 i~~~~~~~ 376 (430)
|..|+...
T Consensus 325 il~~~~~~ 332 (334)
T PRK13684 325 LLRYVGSA 332 (334)
T ss_pred EEEecCCC
Confidence 98887654
No 420
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.09 E-value=0.79 Score=46.78 Aligned_cols=134 Identities=10% Similarity=-0.008 Sum_probs=79.6
Q ss_pred cCCCCEEEE--EeCCCcEEEEECCCCCcce----EEEeec------CCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCC
Q 014154 224 IDDHRKFVA--GTNDHQVRLYDTSAQRRPV----MSFDFR------ETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG 290 (430)
Q Consensus 224 ~~~~~~l~s--~~~dg~i~iwd~~~~~~~~----~~~~~~------~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~ 290 (430)
.+|+...++ .+++-.|..||++...... .-+..| ..-..++.|.|.- ...++...|+.|++..+...
T Consensus 109 ~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~ 188 (1405)
T KOG3630|consen 109 FHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL 188 (1405)
T ss_pred ccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhh
Confidence 456554333 3444578999998632111 111111 1234577788754 23455667888888776533
Q ss_pred eE-EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEe-eccccceEEeeeccccccc
Q 014154 291 KL-LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL-KQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 291 ~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~ 360 (430)
.. +..+.. ....++++|+|.|..++.|-..|++.-|... ++....+.. .......|.++.|-....+
T Consensus 189 ~~~v~s~p~--t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 189 AQNVTSFPV--TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhcccCc--ccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeE
Confidence 22 233333 5678999999999999999999999888653 443333211 1111344788888766554
No 421
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.02 E-value=4.2 Score=39.93 Aligned_cols=40 Identities=10% Similarity=0.061 Sum_probs=32.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCC
Q 014154 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 202 (430)
..+..+..+|+..+|+--...|.|.+-+.+..+...++..
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~ 256 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC 256 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence 4567788899999999999999999998887766666553
No 422
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.77 E-value=4.3 Score=35.48 Aligned_cols=206 Identities=13% Similarity=0.091 Sum_probs=113.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCC------Ce-eeEeeCCCCCCCCCCcCCcceeEEEEee------cCC----C
Q 014154 165 IAFSKVDISEKFSLFGGKGVEVNVWDLDK------CE-KIWTAKPPPKNSLGIFTPTWFTSAAFLS------IDD----H 227 (430)
Q Consensus 165 i~~~~~~~~~~~l~~~~~d~~i~~~d~~~------~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~----~ 227 (430)
-+.|+++|.+.+.++....+...+||... .+ .+..+..... ...+...+.+.|.. +.. .
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~----~~~~~~PTGiVfN~~~~F~vt~~g~~~~ 100 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPP----LAAEGTPTGQVFNGSDTFVVSGEGITGP 100 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCC----CCCCCCccEEEEeCCCceEEcCCCcccc
Confidence 45689999888888888888999999861 21 2222221111 00113466666631 111 1
Q ss_pred CEEEEEeCCCcEEEEECCCCCc----ceEEEeec-CCCe-EEEEecC--CCCEEEEEe-CCCcEEEEEccCCeEE--eee
Q 014154 228 RKFVAGTNDHQVRLYDTSAQRR----PVMSFDFR-ETPI-KAVAEEP--DSFNIYIGN-GSGDLASVDIRTGKLL--GCF 296 (430)
Q Consensus 228 ~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~-~~~i-~~~~~sp--~~~~l~~~~-~d~~i~iwd~~~~~~~--~~~ 296 (430)
..++.+++||+|.-|...-... ....+... ...| ..+++.. .+.+|+.+. ..++|.+||-.-.++. ..+
T Consensus 101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence 2367789999999998643221 12223211 2333 3455543 355665554 5688999986433221 011
Q ss_pred eCC--C--CCC-----------eEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccc----
Q 014154 297 IGK--C--SGS-----------IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK---- 357 (430)
Q Consensus 297 ~~~--~--~~~-----------v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~---- 357 (430)
... . -.+ |+-..-.++.+.=+.+..-|.|-+||+. |++++++...+..... |.|+..|-
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaP-WG~a~APa~FG~ 258 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAP-WGLAIAPESFGS 258 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCC-ceeeeChhhhCC
Confidence 100 0 000 1111111222222233345789999974 8888887656665555 88888663
Q ss_pred --ccccc-cCCCCceEecCCCC
Q 014154 358 --EVANA-AADAPMLEIQNGND 376 (430)
Q Consensus 358 --g~~~~-~~~d~~i~~~~~~~ 376 (430)
|.++. --.||+|..||...
T Consensus 259 ~sg~lLVGNFGDG~InaFD~~s 280 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDPQS 280 (336)
T ss_pred CCCCeEEeecCCceeEEecCCC
Confidence 44533 34699999999764
No 423
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.62 E-value=5.5 Score=37.01 Aligned_cols=143 Identities=12% Similarity=0.000 Sum_probs=80.7
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCC-CcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe-----EEeeee
Q 014154 224 IDDHRKFVAGTNDHQVRLYDTSAQ-RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK-----LLGCFI 297 (430)
Q Consensus 224 ~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~ 297 (430)
.+++.+++.+.....++-||--.. ..+ ... .....++++.+.+++..++++ ..|.+. +....++ ......
T Consensus 247 ~~dG~~~~vg~~G~~~~s~d~G~~~W~~-~~~-~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~ 322 (398)
T PLN00033 247 SPDGDYVAVSSRGNFYLTWEPGQPYWQP-HNR-ASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEAD 322 (398)
T ss_pred cCCCCEEEEECCccEEEecCCCCcceEE-ecC-CCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecc
Confidence 567766666544433334443321 011 111 123568899999999888766 556543 3333443 122222
Q ss_pred CC-CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEec
Q 014154 298 GK-CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQ 372 (430)
Q Consensus 298 ~~-~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~ 372 (430)
.. ....+..+.|.+++..+++ +..|.+.... ..|+.-............++.+.|.++++....+.+|.|.-|
T Consensus 323 ~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 323 IKSRGFGILDVGYRSKKEAWAA-GGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred cCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 11 1235889999988775555 5778666553 444443332111222334689999888888777888887665
No 424
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.62 E-value=7.9 Score=38.04 Aligned_cols=106 Identities=19% Similarity=0.237 Sum_probs=54.9
Q ss_pred CCCEEEEEeCCC------eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCc-----EEE
Q 014154 173 SEKFSLFGGKGV------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ-----VRL 241 (430)
Q Consensus 173 ~~~~l~~~~~d~------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-----i~i 241 (430)
++...++|+.++ ++..||..+..-.......... .......+ ++.+.+.|+.|+. |..
T Consensus 427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R-------~~~g~a~~----~~~iYvvGG~~~~~~~~~VE~ 495 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR-------SGFGVAVL----NGKIYVVGGFDGTSALSSVER 495 (571)
T ss_pred CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc-------ccceEEEE----CCEEEEECCccCCCccceEEE
Confidence 567777777554 4677777664332211111100 11222233 6788888888763 777
Q ss_pred EECCCCCc-ceEEEeecCCCeEEEEecCCCCEEEEEeCCC-----cEEEEEccCCe
Q 014154 242 YDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSG-----DLASVDIRTGK 291 (430)
Q Consensus 242 wd~~~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~-----~i~iwd~~~~~ 291 (430)
||..+.+- .+..+......+..+.+ ++...++|+.|| +|..||..+.+
T Consensus 496 ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 496 YDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred EcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 88887431 11111212222222222 466777787765 46666665544
No 425
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.51 E-value=5.7 Score=36.02 Aligned_cols=76 Identities=17% Similarity=0.231 Sum_probs=45.8
Q ss_pred ceEEEeecCCCeEEEEecC-------CCCEEEEEeCCCcEEEEEccCCeEE---eeeeCCCCCCeEEEEecCCCCeEEEE
Q 014154 250 PVMSFDFRETPIKAVAEEP-------DSFNIYIGNGSGDLASVDIRTGKLL---GCFIGKCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 250 ~~~~~~~~~~~i~~~~~sp-------~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~i~~~~~~~~l~s~ 319 (430)
|+..+..| ..+..+.|.. .+.+|++.-..+.|....+..+..+ ..+......++..+++.|||.+.++.
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~ 323 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSD 323 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEE
Confidence 34445444 5666777653 4556666666678888888755332 22222224479999999999988888
Q ss_pred eCCCcEE
Q 014154 320 GLDSYLR 326 (430)
Q Consensus 320 ~~dg~i~ 326 (430)
..+|.|+
T Consensus 324 d~~G~iy 330 (331)
T PF07995_consen 324 DSDGKIY 330 (331)
T ss_dssp -TTTTEE
T ss_pred CCCCeEe
Confidence 7888774
No 426
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.51 E-value=0.46 Score=27.74 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=25.9
Q ss_pred CCeEEEEecCCC---CeEEEEeCCCcEEEEECCC
Q 014154 302 GSIRSIARHPTL---PIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 302 ~~v~~i~~~~~~---~~l~s~~~dg~i~iwd~~~ 332 (430)
+.|.++.|+|.. .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368899999854 5888888889999999985
No 427
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.47 E-value=6 Score=36.18 Aligned_cols=210 Identities=14% Similarity=0.115 Sum_probs=112.4
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCce--eEEee-cC---CeEEEecCCC--Cc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPL--LAVAR-KN---GLTDILNPLN--GD 86 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~--l~~g~-~d---g~i~iwd~~~--~~ 86 (430)
.+++..+..+-+.+||+.+ +.++.+.. +...-+.+.....-.|+. ||+++ .+ .+|++|.+.. +.
T Consensus 69 SlIigTdK~~GL~VYdL~G------k~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~ 140 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLDG------KELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE 140 (381)
T ss_dssp -EEEEEETTTEEEEEETTS-------EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE
T ss_pred ceEEEEeCCCCEEEEcCCC------cEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc
Confidence 5677888889999999998 56665532 222222222211112322 34443 32 4799997752 32
Q ss_pred ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceE
Q 014154 87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA 166 (430)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~ 166 (430)
+..+... ...+......+.+++++..... ..-..+....+|.+..|.+.....-. -....+|.|.+ ...+.
T Consensus 141 -L~~v~~~-~~p~~~~~~e~yGlcly~~~~~----g~~ya~v~~k~G~~~Qy~L~~~~~g~-v~~~lVR~f~~--~sQ~E 211 (381)
T PF02333_consen 141 -LTDVTDP-AAPIATDLSEPYGLCLYRSPST----GALYAFVNGKDGRVEQYELTDDGDGK-VSATLVREFKV--GSQPE 211 (381)
T ss_dssp -EEE-CBT-TC-EE-SSSSEEEEEEEE-TTT------EEEEEEETTSEEEEEEEEE-TTSS-EEEEEEEEEE---SS-EE
T ss_pred -ceEcCCC-CcccccccccceeeEEeecCCC----CcEEEEEecCCceEEEEEEEeCCCCc-EeeEEEEEecC--CCcce
Confidence 2222110 0011122345678888865321 11356667788988888886433200 01124566655 46889
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCC-----CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC--CEEEEEeCCCcE
Q 014154 167 FSKVDISEKFSLFGGKGVEVNVWDLDK-----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH--RKFVAGTNDHQV 239 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~d~~i~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~~~dg~i 239 (430)
.+..+....+|+.+-.+.-|+-|+.+. +..+....... ....|..+++....++ .+|+|.-.+++.
T Consensus 212 GCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~-------l~aDvEGlaly~~~~g~gYLivSsQG~~sf 284 (381)
T PF02333_consen 212 GCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDG-------LVADVEGLALYYGSDGKGYLIVSSQGDNSF 284 (381)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSS-------B-S-EEEEEEEE-CCC-EEEEEEEGGGTEE
T ss_pred EEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccc-------cccCccceEEEecCCCCeEEEEEcCCCCeE
Confidence 999999899999999998888888762 22222222111 1255777777544443 345555557789
Q ss_pred EEEECCCCC
Q 014154 240 RLYDTSAQR 248 (430)
Q Consensus 240 ~iwd~~~~~ 248 (430)
.+|+.....
T Consensus 285 ~Vy~r~~~~ 293 (381)
T PF02333_consen 285 AVYDREGPN 293 (381)
T ss_dssp EEEESSTT-
T ss_pred EEEecCCCC
Confidence 999987543
No 428
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.35 E-value=2.5 Score=38.89 Aligned_cols=114 Identities=11% Similarity=0.104 Sum_probs=74.2
Q ss_pred ceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEee--CCCCCCCCCCcCCcceeEEEEeecCCCCEE
Q 014154 153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA--KPPPKNSLGIFTPTWFTSAAFLSIDDHRKF 230 (430)
Q Consensus 153 ~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 230 (430)
..--++....++|.++.|+++.+.||+--.+.+|.+++....+....+ ....+ ...|....| ..+ .-+
T Consensus 57 VpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k-------~~~IlGF~W--~~s-~e~ 126 (657)
T KOG2377|consen 57 VPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK-------NANILGFCW--TSS-TEI 126 (657)
T ss_pred CCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccC-------cceeEEEEE--ecC-eeE
Confidence 444566777889999999999999999999999999998433222111 11110 134777777 333 344
Q ss_pred EEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe
Q 014154 231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (430)
Q Consensus 231 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 277 (430)
+.-... -+-+|-.......++..+.|...|.-..|.++.+.++.++
T Consensus 127 A~i~~~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 127 AFITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred EEEecC-CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 443433 3566665554555666777878888888888876655443
No 429
>PRK10115 protease 2; Provisional
Probab=93.20 E-value=11 Score=38.22 Aligned_cols=110 Identities=7% Similarity=0.054 Sum_probs=64.8
Q ss_pred eEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC---
Q 014154 165 IAFSKVDISEKFSLFGGK-----GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--- 236 (430)
Q Consensus 165 i~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--- 236 (430)
+..+.++|++++|+.+.. ...|++.|+.++..+...... . -..++| .++++.|+....+
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~----------~-~~~~~w--~~D~~~~~y~~~~~~~ 195 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN----------V-EPSFVW--ANDSWTFYYVRKHPVT 195 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC----------c-ceEEEE--eeCCCEEEEEEecCCC
Confidence 556788999998886543 235888888877532211110 1 135788 6777766665442
Q ss_pred ---CcEEEEECCCCC-cceEEEeecCCCeE-EEEecCCCCEEEEEeC---CCcEEEEEc
Q 014154 237 ---HQVRLYDTSAQR-RPVMSFDFRETPIK-AVAEEPDSFNIYIGNG---SGDLASVDI 287 (430)
Q Consensus 237 ---g~i~iwd~~~~~-~~~~~~~~~~~~i~-~~~~sp~~~~l~~~~~---d~~i~iwd~ 287 (430)
..|+.+++.++. .-...+........ .+..+.++++++..+. ++.+.+|+.
T Consensus 196 ~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 196 LLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 367888888762 12334443333333 3334547877765543 357888884
No 430
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.19 E-value=11 Score=38.43 Aligned_cols=329 Identities=11% Similarity=0.020 Sum_probs=152.7
Q ss_pred CCCCCcceeeecCCCceEEEEccCCCCCcceeeeecCC--CCCCcceeeeeecCCCCC----ceeEEeecCCeEEEecC-
Q 014154 10 PGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGD--PHSSNCVLAASIDDSQND----PLLAVARKNGLTDILNP- 82 (430)
Q Consensus 10 ~~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~g----~~l~~g~~dg~i~iwd~- 82 (430)
..|....++.++.++.+...++..+ + ++.... -...+.|+.+++ .+++ +++++|..+..+.+.-.
T Consensus 495 ~~~n~sqVvvA~~~~~l~y~~i~~~--~----l~e~~~~~~e~evaCLDisp--~~d~~~~s~~~aVG~Ws~~~~~l~~~ 566 (1096)
T KOG1897|consen 495 VSANASQVVVAGGGLALFYLEIEDG--G----LREVSHKEFEYEVACLDISP--LGDAPNKSRLLAVGLWSDISMILTFL 566 (1096)
T ss_pred EeecceEEEEecCccEEEEEEeecc--c----eeeeeeheecceeEEEeccc--CCCCCCcceEEEEEeecceEEEEEEC
Confidence 3455556666666666666666653 1 111111 234556676665 3222 36788877666554433
Q ss_pred CCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCC
Q 014154 83 LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS 162 (430)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~ 162 (430)
.+...+..... ...--...|.-..+ ..+ ...++.+..+|.+.-+-+......- ...+--.+. .
T Consensus 567 pd~~~~~~~~l----~~~~iPRSIl~~~~-e~d-------~~yLlvalgdG~l~~fv~d~~tg~l----sd~Kk~~lG-t 629 (1096)
T KOG1897|consen 567 PDLILITHEQL----SGEIIPRSILLTTF-EGD-------IHYLLVALGDGALLYFVLDINTGQL----SDRKKVTLG-T 629 (1096)
T ss_pred CCcceeeeecc----CCCccchheeeEEe-ecc-------ceEEEEEcCCceEEEEEEEcccceE----ccccccccC-C
Confidence 22222222111 00000012221111 111 1588888888888777665432100 000000001 1
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeE-EEEeecCCCCEEEEEeCCCcEEE
Q 014154 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS-AAFLSIDDHRKFVAGTNDHQVRL 241 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~dg~i~i 241 (430)
.++.--.|+..+..-+.+..|.-..+|.-+..-....+.... +.. +.|..+.-...++++ ..+.+.+
T Consensus 630 ~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~ke-----------v~~~c~f~s~a~~d~l~~~-~~~~l~i 697 (1096)
T KOG1897|consen 630 QPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKE-----------VNHMCPFNSDAYPDSLASA-NGGALTI 697 (1096)
T ss_pred CCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHH-----------hhhhcccccccCCceEEEe-cCCceEE
Confidence 233333444444443444455555555543222211111111 111 112111123345554 3456666
Q ss_pred EECCCCCc-ceEEEeecCCCeEEEEecCCCCEEEEEeCC--------------CcEEEEEccCCeEEeeeeCCCCC---C
Q 014154 242 YDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGS--------------GDLASVDIRTGKLLGCFIGKCSG---S 303 (430)
Q Consensus 242 wd~~~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d--------------~~i~iwd~~~~~~~~~~~~~~~~---~ 303 (430)
..+..-++ -++++..+ .....+++.+...++++.+.- ..++++|-.+.+.+...+-.... .
T Consensus 698 ~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~S 776 (1096)
T KOG1897|consen 698 GTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALS 776 (1096)
T ss_pred EEecchhhcceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeee
Confidence 66554222 23444444 355667777654444444321 23778888777765443321122 3
Q ss_pred eEEEEecCC-CCeEEEEe----------CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEec
Q 014154 304 IRSIARHPT-LPIIASCG----------LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQ 372 (430)
Q Consensus 304 v~~i~~~~~-~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~ 372 (430)
|.+..|..| +.+++.|. ..|.|.||.+..++.+..+. +....+.+.++.- -+|++ .++-...|++|
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~-e~~v~Gav~aL~~-fngkl-lA~In~~vrLy 853 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVA-ETVVKGAVYALVE-FNGKL-LAGINQSVRLY 853 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeee-eeeeccceeehhh-hCCeE-EEecCcEEEEE
Confidence 455558777 66777774 34788888887744444321 1122333333322 14554 33445789999
Q ss_pred CCCCCcc
Q 014154 373 NGNDTQE 379 (430)
Q Consensus 373 ~~~~~~~ 379 (430)
++....+
T Consensus 854 e~t~~~e 860 (1096)
T KOG1897|consen 854 EWTTERE 860 (1096)
T ss_pred Eccccce
Confidence 8877533
No 431
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.11 E-value=1.1 Score=41.01 Aligned_cols=162 Identities=17% Similarity=0.126 Sum_probs=94.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-EeeCCC-CCCCCCCcCCccee-EEEEeecCCCCEEEEEeCCCcE
Q 014154 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI-WTAKPP-PKNSLGIFTPTWFT-SAAFLSIDDHRKFVAGTNDHQV 239 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~-~~~~~~~~~~~~v~-~~~~~~~~~~~~l~s~~~dg~i 239 (430)
..+..+-+.|+++.++.-+. ..+.++++.+.... +++... .++. ...|+ .+.. -..+..+++++.||-|
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~-----~~~Vte~l~l--L~Gg~SLLv~~~dG~v 292 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDS-----RHQVTEQLYL--LSGGFSLLVVHEDGLV 292 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCch-----HHHHHHHHHH--HhCceeEEEEcCCCce
Confidence 45666788999999987766 58899988653221 111111 1100 01222 1111 1346678888999998
Q ss_pred EEE-ECCCCCcc----eEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCC
Q 014154 240 RLY-DTSAQRRP----VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP 314 (430)
Q Consensus 240 ~iw-d~~~~~~~----~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 314 (430)
.-| |.+....+ ++.++....++..+.-..+.+-+++-+..|++..+.....+.+..-.. -..+.-+++||++.
T Consensus 293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~--~~~~~~~~~Sp~~~ 370 (733)
T COG4590 293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA--YQAPQLVAMSPNQA 370 (733)
T ss_pred eeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh--hcCcceeeeCcccc
Confidence 877 55543322 222222234444444333446677778888888876544444322222 23567789999999
Q ss_pred eEEEEeCCCcEEEEECCCCce
Q 014154 315 IIASCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 315 ~l~s~~~dg~i~iwd~~~~~~ 335 (430)
+|++- ..|.++++.+++..+
T Consensus 371 ~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 371 YLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred hheee-cCCceEEEEecCCCC
Confidence 98876 356688888765443
No 432
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=93.11 E-value=5.8 Score=34.96 Aligned_cols=91 Identities=15% Similarity=0.105 Sum_probs=66.4
Q ss_pred EEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeC--------------------CC
Q 014154 264 VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL--------------------DS 323 (430)
Q Consensus 264 ~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~--------------------dg 323 (430)
..|+ +|++.++=+..|.+.-+|..+|+......- .+....+.|. |.+++++.. ..
T Consensus 208 PRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~v--pG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~C 282 (335)
T TIGR03032 208 PRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFL--PGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGC 282 (335)
T ss_pred CcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEEC--CCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcc
Confidence 3454 677888888899999999988865433332 3466888886 777766632 12
Q ss_pred cEEEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154 324 YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 324 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 360 (430)
-|.|.|+++|..++.+.+.+.... +++++.-|.=+.
T Consensus 283 Gv~vidl~tG~vv~~l~feg~v~E-ifdV~vLPg~r~ 318 (335)
T TIGR03032 283 GVAVIDLNSGDVVHWLRFEGVIEE-IYDVAVLPGVRR 318 (335)
T ss_pred cEEEEECCCCCEEEEEEeCCceeE-EEEEEEecCCCC
Confidence 388899999999999888887555 589988887555
No 433
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.05 E-value=4.7 Score=33.73 Aligned_cols=93 Identities=15% Similarity=0.122 Sum_probs=62.0
Q ss_pred eeEEEEeecCCCC-EEEEEeCCCcEEEEE--CCCCC----cceEEEee----cCCCeEEEEecCCCCEEEEEeCCCcEEE
Q 014154 216 FTSAAFLSIDDHR-KFVAGTNDHQVRLYD--TSAQR----RPVMSFDF----RETPIKAVAEEPDSFNIYIGNGSGDLAS 284 (430)
Q Consensus 216 v~~~~~~~~~~~~-~l~s~~~dg~i~iwd--~~~~~----~~~~~~~~----~~~~i~~~~~sp~~~~l~~~~~d~~i~i 284 (430)
-+.++| +.+.. +.++-+.+-+|.-|| ..++. ..+..++. ....--.+++..+|++.++.-..++|..
T Consensus 160 sNgl~W--d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 160 SNGLAW--DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQK 237 (310)
T ss_pred Cccccc--cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence 356777 44554 344556677787777 44432 11222221 1112234555667888888888999999
Q ss_pred EEccCCeEEeeeeCCCCCCeEEEEecC
Q 014154 285 VDIRTGKLLGCFIGKCSGSIRSIARHP 311 (430)
Q Consensus 285 wd~~~~~~~~~~~~~~~~~v~~i~~~~ 311 (430)
.|..+|+.+.++.-. ...|++++|--
T Consensus 238 ~dp~tGK~L~eiklP-t~qitsccFgG 263 (310)
T KOG4499|consen 238 VDPTTGKILLEIKLP-TPQITSCCFGG 263 (310)
T ss_pred ECCCCCcEEEEEEcC-CCceEEEEecC
Confidence 999999999999887 88999999953
No 434
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.01 E-value=0.93 Score=38.16 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=42.8
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCcceEE------Ee-------ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC
Q 014154 225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMS------FD-------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (430)
Q Consensus 225 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------~~-------~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 290 (430)
.++.+|++-+.+|.+++||+.+.+..+.. +. .....|..+.++.+|.-|++-+ +|..+.|+..-+
T Consensus 20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence 36788999999999999999986542221 11 2335667777776776555543 466777776443
No 435
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.01 E-value=1.5 Score=40.64 Aligned_cols=95 Identities=17% Similarity=0.173 Sum_probs=57.9
Q ss_pred EEEEcCCCCEEEEEeCCCeEEE---EECCC-C----eeeEeeCCCCCCCCCCcCCcceeEEEEeec---------CCCCE
Q 014154 167 FSKVDISEKFSLFGGKGVEVNV---WDLDK-C----EKIWTAKPPPKNSLGIFTPTWFTSAAFLSI---------DDHRK 229 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~d~~i~~---~d~~~-~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~~~ 229 (430)
.++++|+++.|+.+..+..+.+ |+... + .........-.. .....|+++.+.+- +|...
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~----~~~e~ITsi~clpl~s~~~s~~~~dw~~ 81 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDD----EPGECITSILCLPLSSQKRSTGGPDWTC 81 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccC----CCCCEEEEEEEEEeecccccCCCCCcEE
Confidence 4678899999998887766555 53311 1 111111111100 00146777766543 56789
Q ss_pred EEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEec
Q 014154 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE 267 (430)
Q Consensus 230 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s 267 (430)
+++|..+|.|++|.... . .+..-..|..+|..|.+.
T Consensus 82 I~VG~ssG~vrfyte~G-~-LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 82 IAVGTSSGYVRFYTENG-V-LLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred EEEEecccEEEEEeccc-h-HHHHHhcCccceEEEEec
Confidence 99999999999998853 3 344444567777777763
No 436
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=92.97 E-value=10 Score=37.37 Aligned_cols=260 Identities=9% Similarity=0.056 Sum_probs=129.7
Q ss_pred cCCCCCceeEEeecCCeEEEecCC-CCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC-eeEE
Q 014154 60 DDSQNDPLLAVARKNGLTDILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG-KASM 137 (430)
Q Consensus 60 ~~~p~g~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v 137 (430)
+.+|+.+.+-.|=....|.-|=+. +.+.+..+.- +....+.++.++...... ...+.|..++ ..++
T Consensus 34 ~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi-------~pt~iV~~~dV~~~~~~~-----~~~~~glt~rKk~~l 101 (670)
T PF10395_consen 34 DFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPI-------SPTTIVECCDVLEKSDGK-----KLYCVGLTERKKFKL 101 (670)
T ss_pred ccCCCCceEEEEeccchhhheecCCCcceeEeecc-------CcCceEEEEEeEecCCCc-----EEEEEEEeeCCeeEE
Confidence 346666666555444445444332 3343333321 223455666666554311 3555554444 3455
Q ss_pred EEeeecCc---cccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE--eeCCCCCCCCCCcC
Q 014154 138 RSIEVTKV---SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW--TAKPPPKNSLGIFT 212 (430)
Q Consensus 138 ~~~~~~~~---~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~ 212 (430)
..+..... ...........+.+.-...|..+.+.+++..+++.-.+|.|.+||...+.... .+.... ...+..
T Consensus 102 l~i~~~~~~~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~--~~~v~y 179 (670)
T PF10395_consen 102 LLIERKVGSTEDGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKS--SINVSY 179 (670)
T ss_pred EEEEccCccccccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccccc--ccceeh
Confidence 55544311 11122234445555567889999999999999999999999999994322211 111111 001101
Q ss_pred CcceeEEEEeecCCCCEEEEEeC-C---CcEEEEECCCCCcceEEEe---ecCCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 014154 213 PTWFTSAAFLSIDDHRKFVAGTN-D---HQVRLYDTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGSGDLASV 285 (430)
Q Consensus 213 ~~~v~~~~~~~~~~~~~l~s~~~-d---g~i~iwd~~~~~~~~~~~~---~~~~~i~~~~~sp~~~~l~~~~~d~~i~iw 285 (430)
...|..... .....++++-+. + -..+++.+......+..+. .+........|..+...|+-- .+++|.+|
T Consensus 180 s~fv~~~~~--~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~y 256 (670)
T PF10395_consen 180 SKFVNDFEL--ENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSY 256 (670)
T ss_pred hhhhccccc--ccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEE
Confidence 112222221 112334444333 2 2467888732222233333 122223333333333344333 67899999
Q ss_pred EccCCeEEeeeeCC---CC--CCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeE
Q 014154 286 DIRTGKLLGCFIGK---CS--GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 286 d~~~~~~~~~~~~~---~~--~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 338 (430)
++...+...++.-. .. ..+.++. .|..++++-+ .++.|++.|+.-...+..
T Consensus 257 sip~f~~~~tI~l~~ii~~~~~~~vSl~-~~s~nRvLLs-~~nkIyLld~~~~siLse 312 (670)
T PF10395_consen 257 SIPNFQIQKTISLPSIIDKESDDLVSLK-PPSPNRVLLS-VNNKIYLLDLKFESILSE 312 (670)
T ss_pred EcCCceEEEEEEechhhccccccceEee-cCCCCeEEEE-cCCEEEEEeehhhhhhhh
Confidence 99888876665432 01 1233433 2333344433 466899999875555444
No 437
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.88 E-value=1.3 Score=41.41 Aligned_cols=78 Identities=18% Similarity=0.188 Sum_probs=52.9
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEEc---------cCCeEEee----------eeCCCCCCeEEEEecCCC---CeEE
Q 014154 260 PIKAVAEEPDSFNIYIGNGSGDLASVDI---------RTGKLLGC----------FIGKCSGSIRSIARHPTL---PIIA 317 (430)
Q Consensus 260 ~i~~~~~sp~~~~l~~~~~d~~i~iwd~---------~~~~~~~~----------~~~~~~~~v~~i~~~~~~---~~l~ 317 (430)
.|..+..++.|..++..+.+|.+.++=. +.|+..-. |.....-.+..++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4567778999999999999997666531 23322111 111112356788999976 5677
Q ss_pred EEeCCCcEEEEECCCCceee
Q 014154 318 SCGLDSYLRFWDIKTRQLLS 337 (430)
Q Consensus 318 s~~~dg~i~iwd~~~~~~~~ 337 (430)
.-+.|+.||+||+..-..+.
T Consensus 185 iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEecCcEEEEEecCCcchhh
Confidence 77889999999998766554
No 438
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=92.70 E-value=7.9 Score=35.45 Aligned_cols=190 Identities=10% Similarity=0.096 Sum_probs=104.6
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee--cCCCCE--EEEEe-CC---CcEEEEE
Q 014154 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS--IDDHRK--FVAGT-ND---HQVRLYD 243 (430)
Q Consensus 172 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~--l~s~~-~d---g~i~iwd 243 (430)
|...+++....++-+.+||+. |+.+..+... .++.+.... .-++.. |+.++ .+ .+|++|.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~G-----------r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~ 133 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPVG-----------RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFR 133 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS------------EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecCC-----------CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEE
Confidence 455677777788899999995 5555555432 223222210 113332 34444 32 4699997
Q ss_pred CCCCCcceEEEeec-------CCCeEEEEe--cC-CC-CEEEEEeCCCcEEEEEcc---CC----eEEeeeeCCCCCCeE
Q 014154 244 TSAQRRPVMSFDFR-------ETPIKAVAE--EP-DS-FNIYIGNGSGDLASVDIR---TG----KLLGCFIGKCSGSIR 305 (430)
Q Consensus 244 ~~~~~~~~~~~~~~-------~~~i~~~~~--sp-~~-~~l~~~~~d~~i~iwd~~---~~----~~~~~~~~~~~~~v~ 305 (430)
+......+..+... ...++.+++ +| +| -++++...+|.+..|-+. .+ +.+++|.. ...+.
T Consensus 134 id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~--~sQ~E 211 (381)
T PF02333_consen 134 IDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV--GSQPE 211 (381)
T ss_dssp EETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EE
T ss_pred ecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC--CCcce
Confidence 76322223333221 124667776 33 34 366677888988888764 33 45777876 45889
Q ss_pred EEEecCCCCeEEEEeCCCcEEEEECCC-----CceeeEEEeec-cccceEEeeec--ccccc-c--cccCCCCceEecCC
Q 014154 306 SIARHPTLPIIASCGLDSYLRFWDIKT-----RQLLSAVFLKQ-HLNEVVFDSAF--ADKEV-A--NAAADAPMLEIQNG 374 (430)
Q Consensus 306 ~i~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~-~~~~~v~~~~~--s~~g~-~--~~~~~d~~i~~~~~ 374 (430)
.+.......+|+.+-+|--|.-|+.+. ++.+.. ..+ +...-+-.++. .+++. + ++.-.+++..||+.
T Consensus 212 GCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~--~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 212 GCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVAS--ADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEE--BSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred EEEEecccCCEEEecCccEEEEEecCCCCCCcceeeec--ccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence 999988888999998887777777652 222222 222 22333445544 33443 3 55556778999987
Q ss_pred CCC
Q 014154 375 NDT 377 (430)
Q Consensus 375 ~~~ 377 (430)
...
T Consensus 290 ~~~ 292 (381)
T PF02333_consen 290 EGP 292 (381)
T ss_dssp STT
T ss_pred CCC
Confidence 653
No 439
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.59 E-value=7.1 Score=34.66 Aligned_cols=115 Identities=13% Similarity=0.056 Sum_probs=58.4
Q ss_pred EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEE-CCC
Q 014154 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD-IKT 332 (430)
Q Consensus 254 ~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd-~~~ 332 (430)
.....+.+..+..+++|++++++.....+.-||--...-...-+.. ...|..+.|.|++.+.+.+ ..|.|+.=+ ...
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~-~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNS-SRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD 217 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--S-SS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCc-cceehhceecCCCCEEEEe-CCcEEEEccCCCC
Confidence 3344567888989999999998876666667775432111111222 5789999999998766654 788888776 222
Q ss_pred CceeeEEEeeccc-cceEEeeeccccccccccCCCCceE
Q 014154 333 RQLLSAVFLKQHL-NEVVFDSAFADKEVANAAADAPMLE 370 (430)
Q Consensus 333 ~~~~~~~~~~~~~-~~~v~~~~~s~~g~~~~~~~d~~i~ 370 (430)
......-..+... .-.+.+++|.+++...+++..|.+.
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~ 256 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL 256 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE
T ss_pred ccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE
Confidence 2221110011111 2237899999998883344444443
No 440
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.54 E-value=7.9 Score=35.03 Aligned_cols=160 Identities=14% Similarity=0.109 Sum_probs=90.2
Q ss_pred cceeEEEEeecCCCCEEEEEeCCCc------EEEEECCCCC---cceE-----EEeecCC--------CeEEEEecCCCC
Q 014154 214 TWFTSAAFLSIDDHRKFVAGTNDHQ------VRLYDTSAQR---RPVM-----SFDFRET--------PIKAVAEEPDSF 271 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~s~~~dg~------i~iwd~~~~~---~~~~-----~~~~~~~--------~i~~~~~sp~~~ 271 (430)
..+..+.+ .+++..+++.+.+|. +..+++.... ..+. .+....+ ..-+|++.+++.
T Consensus 20 GGlSgl~~--~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 20 GGLSGLDY--DPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred CcEeeEEE--eCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 44677888 545555666677777 6655554310 0011 1111111 334788877887
Q ss_pred EEEEEeCC------CcEEEEEccCCeEEeeee--C------------CCCCCeEEEEecCCCCeEEEEeC-----CC--c
Q 014154 272 NIYIGNGS------GDLASVDIRTGKLLGCFI--G------------KCSGSIRSIARHPTLPIIASCGL-----DS--Y 324 (430)
Q Consensus 272 ~l~~~~~d------~~i~iwd~~~~~~~~~~~--~------------~~~~~v~~i~~~~~~~~l~s~~~-----dg--~ 324 (430)
++++.=.+ ..|+.++.. |+.+..+. . .......+++++|+|+.|+++.+ |+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 77776666 788889876 66544441 1 12457889999999997766642 22 1
Q ss_pred -------EEEE--ECCC-CceeeEEEeecc------ccceEEeeecccccccccc------CCCCceEecCCCC
Q 014154 325 -------LRFW--DIKT-RQLLSAVFLKQH------LNEVVFDSAFADKEVANAA------ADAPMLEIQNGND 376 (430)
Q Consensus 325 -------i~iw--d~~~-~~~~~~~~~~~~------~~~~v~~~~~s~~g~~~~~------~~d~~i~~~~~~~ 376 (430)
++|+ |..+ ++....+.+.-. ....+..+.+-+++++++- .....+++|..+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l 250 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDL 250 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEc
Confidence 4554 4444 333333322222 2345678888888876221 1345666665553
No 441
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.52 E-value=7.1 Score=34.52 Aligned_cols=170 Identities=12% Similarity=0.070 Sum_probs=87.5
Q ss_pred eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC---CEEE-EEeCCCcEEEEECCCCCcceEEEeec---
Q 014154 185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH---RKFV-AGTNDHQVRLYDTSAQRRPVMSFDFR--- 257 (430)
Q Consensus 185 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~--- 257 (430)
.|.+||+.+.+.++.+.-+..... ..+.+..+.+...+.. .++. +=+..+-|.++|+.+++. .+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~---~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s-~Rv~~~~~~~ 110 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAP---PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKS-WRVLHNSFSP 110 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS----TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEE-EEEETCGCTT
T ss_pred EEEEEECCCCcEEEEEECChHHcc---cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcE-EEEecCCcce
Confidence 577889988888777655432211 2356778877432221 2333 333445799999998652 2222111
Q ss_pred ----------------CCCeEEEEecC---CCCEEEEEeCCCcEEEEEccC-----Ce---------EEeeeeCCCCCCe
Q 014154 258 ----------------ETPIKAVAEEP---DSFNIYIGNGSGDLASVDIRT-----GK---------LLGCFIGKCSGSI 304 (430)
Q Consensus 258 ----------------~~~i~~~~~sp---~~~~l~~~~~d~~i~iwd~~~-----~~---------~~~~~~~~~~~~v 304 (430)
...+..++.+| ++++|+-....+. ++|.+.+ .. .+..+ +......
T Consensus 111 ~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s 188 (287)
T PF03022_consen 111 DPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQS 188 (287)
T ss_dssp S-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SE
T ss_pred eccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceec-cccCCCC
Confidence 12366666655 6666766654432 3333221 11 11111 2112356
Q ss_pred EEEEecCCCCeEEEEeCCCcEEEEECCCCc---eeeEEEeeccccceEEeeeccc--cccc
Q 014154 305 RSIARHPTLPIIASCGLDSYLRFWDIKTRQ---LLSAVFLKQHLNEVVFDSAFAD--KEVA 360 (430)
Q Consensus 305 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~s~--~g~~ 360 (430)
..++++++|.++++--..+.|..|+..+.- ....+......-....++++.+ +|.+
T Consensus 189 ~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L 249 (287)
T PF03022_consen 189 DGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYL 249 (287)
T ss_dssp CEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-E
T ss_pred ceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceE
Confidence 678899999888888899999999987521 2222211111122346677776 5554
No 442
>PHA03098 kelch-like protein; Provisional
Probab=92.31 E-value=3.5 Score=40.33 Aligned_cols=144 Identities=15% Similarity=0.093 Sum_probs=70.1
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC------CcEEE
Q 014154 173 SEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND------HQVRL 241 (430)
Q Consensus 173 ~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~i 241 (430)
++...+.|+.+ ..+..||..+.+- ........ +..-.+++. -++.+.+.|+.+ ..+..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W--~~~~~lp~------~r~~~~~~~---~~~~iYv~GG~~~~~~~~~~v~~ 410 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKW--REEPPLIF------PRYNPCVVN---VNNLIYVIGGISKNDELLKTVEC 410 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCce--eeCCCcCc------CCccceEEE---ECCEEEEECCcCCCCcccceEEE
Confidence 56666777765 3467777765432 21111000 011112222 256777777632 35788
Q ss_pred EECCCCCcceEEEe---ecCCCeEEEEecCCCCEEEEEeCC--------CcEEEEEccCCeEEee--eeCCCCCCeEEEE
Q 014154 242 YDTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGS--------GDLASVDIRTGKLLGC--FIGKCSGSIRSIA 308 (430)
Q Consensus 242 wd~~~~~~~~~~~~---~~~~~i~~~~~sp~~~~l~~~~~d--------~~i~iwd~~~~~~~~~--~~~~~~~~v~~i~ 308 (430)
||+.+.. ..... ...... +++ ..++..++.|+.+ ..+.+||..+.+-... +... ......+.
T Consensus 411 yd~~t~~--W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~ 485 (534)
T PHA03098 411 FSLNTNK--WSKGSPLPISHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLCI 485 (534)
T ss_pred EeCCCCe--eeecCCCCccccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEEE
Confidence 9987632 11111 111111 222 2355566666543 2388899887654321 1111 11112222
Q ss_pred ecCCCCeEEEEeCC-----CcEEEEECCCCc
Q 014154 309 RHPTLPIIASCGLD-----SYLRFWDIKTRQ 334 (430)
Q Consensus 309 ~~~~~~~l~s~~~d-----g~i~iwd~~~~~ 334 (430)
+ ++.+++.||.+ +.|.+||..+.+
T Consensus 486 ~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 486 F--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred E--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 3 66677777654 467888877654
No 443
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.27 E-value=3.7 Score=38.43 Aligned_cols=142 Identities=14% Similarity=0.126 Sum_probs=86.2
Q ss_pred CCEEE-EEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC-------CEEEEEeCCCcEEEEECC
Q 014154 174 EKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-------RKFVAGTNDHQVRLYDTS 245 (430)
Q Consensus 174 ~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~l~s~~~dg~i~iwd~~ 245 (430)
..+|+ .|.....++-.|++.|+.+.+...+.. + -+.| .|.. ..-++|-.+..|.-.|.+
T Consensus 479 ssli~~dg~~~~kLykmDIErGkvveeW~~~dd----------v-vVqy--~p~~kf~qmt~eqtlvGlS~~svFrIDPR 545 (776)
T COG5167 479 SSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD----------V-VVQY--NPYFKFQQMTDEQTLVGLSDYSVFRIDPR 545 (776)
T ss_pred cceEEecCCCcccceeeecccceeeeEeecCCc----------c-eeec--CCchhHHhcCccceEEeecccceEEeccc
Confidence 34443 355556788888888888877766542 2 3344 3321 223445566677777777
Q ss_pred CCCcceEEEeec----CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeC
Q 014154 246 AQRRPVMSFDFR----ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL 321 (430)
Q Consensus 246 ~~~~~~~~~~~~----~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~ 321 (430)
-....+...... .....|..- ....++++++..|-|++||--.-+....+++. ...|..|..+.+|.++++.+.
T Consensus 546 ~~gNKi~v~esKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~l-G~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 546 ARGNKIKVVESKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGL-GDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred ccCCceeeeeehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCccc-ccceeeeEeecCCcEEEEeec
Confidence 533222222211 112223322 23459999999999999996444444445555 678999999999998776654
Q ss_pred CCcEEEEECC
Q 014154 322 DSYLRFWDIK 331 (430)
Q Consensus 322 dg~i~iwd~~ 331 (430)
..+.+-|+.
T Consensus 624 -~yllL~d~~ 632 (776)
T COG5167 624 -NYLLLTDVP 632 (776)
T ss_pred -ceEEEEecc
Confidence 456677764
No 444
>PHA02790 Kelch-like protein; Provisional
Probab=92.01 E-value=12 Score=36.00 Aligned_cols=145 Identities=9% Similarity=-0.039 Sum_probs=69.6
Q ss_pred CCCEEEEEeCCC-----eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC--CcEEEEECC
Q 014154 173 SEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--HQVRLYDTS 245 (430)
Q Consensus 173 ~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~ 245 (430)
++..+++|+.++ .+..||..+..-.......... .....+.. ++.+.+.|+.+ ..+..||..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r-------~~~~~v~~----~~~iYviGG~~~~~sve~ydp~ 339 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPR-------LYASGVPA----NNKLYVVGGLPNPTSVERWFHG 339 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchh-------hcceEEEE----CCEEEEECCcCCCCceEEEECC
Confidence 345556676542 4677887765432211111100 11222233 67777777754 357788876
Q ss_pred CCCcceEEEeecCCCe-EEEEecCCCCEEEEEeCC---CcEEEEEccCCeEEee--eeCCCCCCeEEEEecCCCCeEEEE
Q 014154 246 AQRRPVMSFDFRETPI-KAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGC--FIGKCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 246 ~~~~~~~~~~~~~~~i-~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~ 319 (430)
+.. ...+..-..+. ......-+++..+.|+.+ ..+..||.++.+-... +... ......+. -++.+.+.|
T Consensus 340 ~n~--W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~-r~~~~~~~--~~~~IYv~G 414 (480)
T PHA02790 340 DAA--WVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP-HYKSCALV--FGRRLFLVG 414 (480)
T ss_pred CCe--EEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc-cccceEEE--ECCEEEEEC
Confidence 532 11111111111 111112356677777754 3477899877654321 1111 11112222 356666666
Q ss_pred eCCCcEEEEECCCCcee
Q 014154 320 GLDSYLRFWDIKTRQLL 336 (430)
Q Consensus 320 ~~dg~i~iwd~~~~~~~ 336 (430)
+ .+.+||..+.+-.
T Consensus 415 G---~~e~ydp~~~~W~ 428 (480)
T PHA02790 415 R---NAEFYCESSNTWT 428 (480)
T ss_pred C---ceEEecCCCCcEe
Confidence 4 4778888765543
No 445
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.79 E-value=4.5 Score=30.62 Aligned_cols=110 Identities=14% Similarity=0.146 Sum_probs=69.9
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCC-------cceEEEeecCCCeEEEEecC-----CCCEEEEEeCCCcEEEEEccCCe
Q 014154 224 IDDHRKFVAGTNDHQVRLYDTSAQR-------RPVMSFDFRETPIKAVAEEP-----DSFNIYIGNGSGDLASVDIRTGK 291 (430)
Q Consensus 224 ~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~i~~~~~sp-----~~~~l~~~~~d~~i~iwd~~~~~ 291 (430)
......|++++.-|.|.|++..... ..+..+.. ...|++|+-.+ +...|+.|+ ...|..||+....
T Consensus 7 DG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~ 84 (136)
T PF14781_consen 7 DGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNS 84 (136)
T ss_pred CCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCc
Confidence 4455688889999999999876422 23444443 35788876543 235677775 5569999998776
Q ss_pred EEeeeeCCCCCCeEEEEecC----CCCeEEEEeCCCcEEEEECCCCceeeE
Q 014154 292 LLGCFIGKCSGSIRSIARHP----TLPIIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 292 ~~~~~~~~~~~~v~~i~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~ 338 (430)
-+..-.. ...|+++.+-. ..+ |+..+.+..|.-||....+...+
T Consensus 85 d~Fyke~--~DGvn~i~~g~~~~~~~~-l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 85 DLFYKEV--PDGVNAIVIGKLGDIPSP-LVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred hhhhhhC--ccceeEEEEEecCCCCCc-EEEECceEEEEEeCCCCcEEEEE
Confidence 5433332 45677777632 233 44444577788888765555554
No 446
>PRK13684 Ycf48-like protein; Provisional
Probab=91.78 E-value=9.9 Score=34.53 Aligned_cols=151 Identities=14% Similarity=0.061 Sum_probs=80.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 242 (430)
..+..+.+.|++.+++++ ..|.+..- .+.+...+...... ....++++.+ .+++..++++ ..|.+.+=
T Consensus 173 g~~~~i~~~~~g~~v~~g-~~G~i~~s-~~~gg~tW~~~~~~-------~~~~l~~i~~--~~~g~~~~vg-~~G~~~~~ 240 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVS-SRGNFYST-WEPGQTAWTPHQRN-------SSRRLQSMGF--QPDGNLWMLA-RGGQIRFN 240 (334)
T ss_pred ceEEEEEECCCCeEEEEe-CCceEEEE-cCCCCCeEEEeeCC-------CcccceeeeE--cCCCCEEEEe-cCCEEEEc
Confidence 467888888887666554 44554432 22222222211111 1145788888 6777766654 56766532
Q ss_pred ECCCCCcceEEEee----cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeC--CCCCCeEEEEecCCCCeE
Q 014154 243 DTSAQRRPVMSFDF----RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG--KCSGSIRSIARHPTLPII 316 (430)
Q Consensus 243 d~~~~~~~~~~~~~----~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l 316 (430)
....+.. ...... ....+.++.+.|++..+++| .+|.|. .....++--..... ......+.+.|..++..+
T Consensus 241 s~d~G~s-W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (334)
T PRK13684 241 DPDDLES-WSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGF 317 (334)
T ss_pred cCCCCCc-cccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceE
Confidence 2333221 111111 12357889999887765554 667554 34444443222221 113357788887666655
Q ss_pred EEEeCCCcEEEEE
Q 014154 317 ASCGLDSYLRFWD 329 (430)
Q Consensus 317 ~s~~~dg~i~iwd 329 (430)
+ .+..|.|.-|+
T Consensus 318 ~-~G~~G~il~~~ 329 (334)
T PRK13684 318 V-LGQRGVLLRYV 329 (334)
T ss_pred E-ECCCceEEEec
Confidence 5 45778887765
No 447
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.58 E-value=0.024 Score=51.77 Aligned_cols=140 Identities=13% Similarity=0.081 Sum_probs=91.8
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEEEEECCC
Q 014154 168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 168 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~ 246 (430)
..|-+.+.-++.++.+..+..||-. ++.+...... .....++| ..++. .++.+-..+.+.+||+.+
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~t----------g~aldm~w--DkegdvlavlAek~~piylwd~n~ 106 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKA-GQVILELNPT----------GKALDMAW--DKEGDVLAVLAEKTGPIYLWDVNS 106 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhh-cceecccCCc----------hhHhhhhh--ccccchhhhhhhcCCCeeechhhh
Confidence 4556666668888888888888853 3333332221 33445566 44554 445566788999999987
Q ss_pred CCcceEEEeec-CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCc
Q 014154 247 QRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSY 324 (430)
Q Consensus 247 ~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~ 324 (430)
... ..+... ...-.-+.|++....++.+...+.+.||+-.+.+.+...-.| ..++++++|.+.+. .+.++.|..
T Consensus 107 eyt--qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh-~RRgtq~av~lEd~-vil~dcd~~ 181 (615)
T KOG2247|consen 107 EYT--QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKH-QRRGTQIAVTLEDY-VILCDCDNT 181 (615)
T ss_pred hhH--HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhccc-ccceeEEEecccce-eeecCcHHH
Confidence 432 222221 112222678999999999999999999998887776555445 88999999998774 455555543
No 448
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.33 E-value=1.5 Score=25.27 Aligned_cols=40 Identities=28% Similarity=0.442 Sum_probs=28.6
Q ss_pred CCCCEEEEEe-CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEe
Q 014154 268 PDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 268 p~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~ 309 (430)
|++++|+++. .++.|.++|..+++.+..+... .....+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg--~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG--GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC--CCCceEEe
Confidence 5777777665 5789999999999888877753 23345554
No 449
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.28 E-value=12 Score=34.54 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=88.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014154 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (430)
Q Consensus 174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 253 (430)
+..++++..+|.|..+|.+++..++...... ....+..-.+ ..+|. |+.++.++.++.+|..++.. +-.
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~-------~~~~~~~~~~--~~~G~-i~~g~~~g~~y~ld~~~G~~-~W~ 136 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLG-------AVAQLSGPIL--GSDGK-IYVGSWDGKLYALDASTGTL-VWS 136 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcC-------cceeccCceE--EeCCe-EEEecccceEEEEECCCCcE-EEE
Confidence 3455556888899999999998877654432 0012223333 22454 77788899899999977664 444
Q ss_pred EeecC-CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC--CCCeEEEEecCCCCeEEEEeC--CCcEEEE
Q 014154 254 FDFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC--SGSIRSIARHPTLPIIASCGL--DSYLRFW 328 (430)
Q Consensus 254 ~~~~~-~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~s~~~--dg~i~iw 328 (430)
..... ..+..-..-.++ .++.++.++.+...|..+++....+.... ...+..-... ....++.+.. ++.+.-.
T Consensus 137 ~~~~~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~ 214 (370)
T COG1520 137 RNVGGSPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYAL 214 (370)
T ss_pred EecCCCeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEE
Confidence 44443 111111222233 45555578999999999898877755420 1111111111 2234445544 5667777
Q ss_pred ECCCCceeeE
Q 014154 329 DIKTRQLLSA 338 (430)
Q Consensus 329 d~~~~~~~~~ 338 (430)
|..+|.....
T Consensus 215 ~~~~G~~~w~ 224 (370)
T COG1520 215 NAEDGTLKWS 224 (370)
T ss_pred EccCCcEeee
Confidence 8888877766
No 450
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.13 E-value=5.4 Score=30.23 Aligned_cols=110 Identities=14% Similarity=0.125 Sum_probs=68.7
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCeeeE
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-----SEKFSLFGGKGVEVNVWDLDKCEKIW 198 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~i~~~d~~~~~~~~ 198 (430)
..|+.++..|.+.|.+...........+..++..++. ..|++++-.+ ....|+.|+.. .|..||+.....++
T Consensus 11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin--~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~~N~d~F 87 (136)
T PF14781_consen 11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN--QEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVENNSDLF 87 (136)
T ss_pred eeEEEEecCCEEEEECCCccccccccccCceeEEECC--CceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcccCchhh
Confidence 4777888889999998766555444467788888874 7788876544 35677777766 89999998765544
Q ss_pred eeCCCCCCCCCCcCCcceeEEEEee-cCCCCEEEEEeCCCcEEEEECCC
Q 014154 199 TAKPPPKNSLGIFTPTWFTSAAFLS-IDDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~ 246 (430)
--..+ +-|+++.+-. .....-++..+.+..|.-||...
T Consensus 88 yke~~----------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 88 YKEVP----------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred hhhCc----------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 32222 4466665521 11122334444455666666654
No 451
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.10 E-value=12 Score=39.53 Aligned_cols=164 Identities=9% Similarity=0.037 Sum_probs=88.3
Q ss_pred eecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCC
Q 014154 71 ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS 150 (430)
Q Consensus 71 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~ 150 (430)
.+.|+.+.+|+++++.....+.+. ...|..+.+..+...-=.+.-..++....--.+.++.+.+... +...
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~--------shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~-~~~~ 165 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGL--------SHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEF-TGEL 165 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccch--------hhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccc-cCcc
Confidence 357899999999987767666652 2366666666554410000112344444455677777766543 1111
Q ss_pred CcceEEeeecC-CCceEEEEEcCCCCEEEEEeCCCeEEE--EECCCC---eeeEeeCC---------CCCCCCCCcCCcc
Q 014154 151 CSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGVEVNV--WDLDKC---EKIWTAKP---------PPKNSLGIFTPTW 215 (430)
Q Consensus 151 ~~~i~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~~--~d~~~~---~~~~~~~~---------~~~~~~~~~~~~~ 215 (430)
.-....+.+.. +-.|.|+....+|+.++ ++.||.|+- |....+ +....+.. +........+.++
T Consensus 166 ~~f~~~~~i~~dg~~V~~I~~t~nGRIF~-~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dp 244 (1311)
T KOG1900|consen 166 SIFNTSFKISVDGVSVNCITYTENGRIFF-AGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDP 244 (1311)
T ss_pred cccccceeeecCCceEEEEEeccCCcEEE-eecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCc
Confidence 11111233333 56788888666777666 455555442 222221 10000000 0000000112357
Q ss_pred eeEEEEeecCCCCEEEEEeCCCcEEEEECCC
Q 014154 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 216 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 246 (430)
|..++. ...-..+.+-+..|+|.+||+..
T Consensus 245 I~qi~I--D~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 245 IRQITI--DNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeEe--ccccceeeeeccCceEEEEEccC
Confidence 888888 55566788888999999999986
No 452
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.06 E-value=9.4 Score=32.91 Aligned_cols=120 Identities=16% Similarity=0.060 Sum_probs=76.0
Q ss_pred cceeEEEEeecCCCCEEEEEeCCC--cEEEEECCCCCcceEEEeec-CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC
Q 014154 214 TWFTSAAFLSIDDHRKFVAGTNDH--QVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 290 (430)
.....+.| ..++.++-+.+.-| .|+.+|+.+++. ....... ..---.++...+ +.....=.++...+||..+.
T Consensus 45 aFTQGL~~--~~~g~LyESTG~yG~S~l~~~d~~tg~~-~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl 120 (264)
T PF05096_consen 45 AFTQGLEF--LDDGTLYESTGLYGQSSLRKVDLETGKV-LQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTL 120 (264)
T ss_dssp -EEEEEEE--EETTEEEEEECSTTEEEEEEEETTTSSE-EEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTT
T ss_pred ccCccEEe--cCCCEEEEeCCCCCcEEEEEEECCCCcE-EEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccc
Confidence 45667777 45778888888776 699999999763 3333322 122234444433 33333446789999999999
Q ss_pred eEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEe
Q 014154 291 KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL 341 (430)
Q Consensus 291 ~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 341 (430)
+.+.++.-. ..=+.++. ++..|+.......|+++|..+.+....+..
T Consensus 121 ~~~~~~~y~--~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 121 KKIGTFPYP--GEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp EEEEEEE-S--SS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred eEEEEEecC--CcceEEEc--CCCEEEEECCccceEEECCcccceEEEEEE
Confidence 998888753 44577774 666777776677899999998887776543
No 453
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.03 E-value=8 Score=32.05 Aligned_cols=140 Identities=17% Similarity=0.205 Sum_probs=77.7
Q ss_pred CEEEEEeCCCeEEEEECC--CCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC------cEEEE---E
Q 014154 175 KFSLFGGKGVEVNVWDLD--KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH------QVRLY---D 243 (430)
Q Consensus 175 ~~l~~~~~d~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg------~i~iw---d 243 (430)
+.|+.+...+.|.+|++. ..+....+... +.|..+.+ +..|++|++--.+. .+|+| .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv----------~~V~~l~y--~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV----------GRVLQLVY--SEAGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch----------hheeEEEe--ccccceEEEEEeecCCccceEEEEEEEhh
Confidence 555555777789999997 34445555443 66889999 78899999854322 45654 2
Q ss_pred CC-CCCcceE-EEeec---------------------CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE-Ee-----
Q 014154 244 TS-AQRRPVM-SFDFR---------------------ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LG----- 294 (430)
Q Consensus 244 ~~-~~~~~~~-~~~~~---------------------~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~-~~----- 294 (430)
.. ....++. .+-+| ..++.+++..|-..-|++|+ ++.+.+|.+..... ..
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~l 175 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFL 175 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEE
Confidence 22 1112222 22221 23566777777655666664 56788998764433 11
Q ss_pred eee----CCC-CCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154 295 CFI----GKC-SGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 295 ~~~----~~~-~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~ 330 (430)
.|. .|+ .-.+..+++ -+.|+|..+ +-.++++.+
T Consensus 176 DFe~~l~~~~~~~~p~~v~i--c~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 176 DFERSLIDHIDNFKPTQVAI--CEGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred echhhhhheecCceEEEEEE--EeeEEEEec-CCEEEEEEE
Confidence 111 111 122444555 345676665 445666654
No 454
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.84 E-value=3.2 Score=37.64 Aligned_cols=106 Identities=18% Similarity=0.142 Sum_probs=56.9
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE---Eeee---eCCCCCCeEEEEecCC---CCeEE-EEeCC-------
Q 014154 260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL---LGCF---IGKCSGSIRSIARHPT---LPIIA-SCGLD------- 322 (430)
Q Consensus 260 ~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~---~~~~---~~~~~~~v~~i~~~~~---~~~l~-s~~~d------- 322 (430)
..++|+|.|++++++ +...|.|++++ ..+.. +..+ ..........++++|+ ..+|. +.+..
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 357899999987766 45699999999 44443 2222 1122567899999995 23333 33311
Q ss_pred -CcEEEEECCCC-------ceeeEEEeec--cccceEEeeeccccccc-cccCCCCc
Q 014154 323 -SYLRFWDIKTR-------QLLSAVFLKQ--HLNEVVFDSAFADKEVA-NAAADAPM 368 (430)
Q Consensus 323 -g~i~iwd~~~~-------~~~~~~~~~~--~~~~~v~~~~~s~~g~~-~~~~~d~~ 368 (430)
..|.-|.+..+ +.+... +.. ........++|.|||.+ ++.++.+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~-~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTG-LPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEE-EES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred ceeeEEEeccCCccccccceEEEEE-eCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 23444444333 111111 121 12233467999999988 66665554
No 455
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.33 E-value=1.8 Score=42.46 Aligned_cols=71 Identities=13% Similarity=0.090 Sum_probs=44.5
Q ss_pred CCCEEEEEeCCCcEEEEECCC---CCcceEEE--ee--------------------cCCCeEEEEecC----CCCEEEEE
Q 014154 226 DHRKFVAGTNDHQVRLYDTSA---QRRPVMSF--DF--------------------RETPIKAVAEEP----DSFNIYIG 276 (430)
Q Consensus 226 ~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~--~~--------------------~~~~i~~~~~sp----~~~~l~~~ 276 (430)
+...++.+..||.+....... ........ .. ....+..+++++ +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 566788888999888877664 11111111 00 012345566666 67899999
Q ss_pred eCCCcEEEEEccCCeEEeee
Q 014154 277 NGSGDLASVDIRTGKLLGCF 296 (430)
Q Consensus 277 ~~d~~i~iwd~~~~~~~~~~ 296 (430)
+.|+.+|+||+.+++++...
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEe
Confidence 99999999999999996654
No 456
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.48 E-value=2.6 Score=41.36 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=28.8
Q ss_pred CeEEEEecC----CCCeEEEEeCCCcEEEEECCCCceeeEE
Q 014154 303 SIRSIARHP----TLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 303 ~v~~i~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 339 (430)
.+..+++++ +..+|++.+.|+.+|+||+.+++++...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 455566666 6689999999999999999999997664
No 457
>PHA02790 Kelch-like protein; Provisional
Probab=89.38 E-value=15 Score=35.37 Aligned_cols=141 Identities=10% Similarity=0.018 Sum_probs=67.6
Q ss_pred CCCEEEEEeCC--CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC---cEEEEECCCC
Q 014154 173 SEKFSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---QVRLYDTSAQ 247 (430)
Q Consensus 173 ~~~~l~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~ 247 (430)
++...+.|+.+ ..+..||..+.+- .....-... ......+.+ ++.+.+.|+.++ .+..||..+.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W--~~~~~l~~~-----r~~~~~~~~----~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAW--VNMPSLLKP-----RCNPAVASI----NNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeE--EECCCCCCC-----CcccEEEEE----CCEEEEecCcCCCCccEEEEeCCCC
Confidence 55666667653 3577787654422 211111000 011222333 677778877654 4678888763
Q ss_pred CcceEEEee---cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEE--eeeeCCCCCCeEEEEecCCCCeEEEEeCC
Q 014154 248 RRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL--GCFIGKCSGSIRSIARHPTLPIIASCGLD 322 (430)
Q Consensus 248 ~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~l~s~~~d 322 (430)
. ...... ..... +++ .-+++..+.| |.+.+||..+.+-. ..+... ......+.+ ++++.+.||.+
T Consensus 387 ~--W~~~~~m~~~r~~~-~~~-~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~-r~~~~~~v~--~~~IYviGG~~ 456 (480)
T PHA02790 387 Q--WQFGPSTYYPHYKS-CAL-VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYP-RDNPELIIV--DNKLLLIGGFY 456 (480)
T ss_pred E--EEeCCCCCCccccc-eEE-EECCEEEEEC---CceEEecCCCCcEeEcCCCCCC-ccccEEEEE--CCEEEEECCcC
Confidence 2 111111 11111 221 2345555555 35778998776543 222211 222223333 67777888754
Q ss_pred -----CcEEEEECCCCc
Q 014154 323 -----SYLRFWDIKTRQ 334 (430)
Q Consensus 323 -----g~i~iwd~~~~~ 334 (430)
..+..||..+.+
T Consensus 457 ~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 457 RGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCcccceEEEEECCCCe
Confidence 245566655443
No 458
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.28 E-value=15 Score=32.37 Aligned_cols=55 Identities=11% Similarity=-0.026 Sum_probs=39.2
Q ss_pred eEEEEEcC------CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEe
Q 014154 165 IAFSKVDI------SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (430)
Q Consensus 165 i~~~~~~~------~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (430)
-+.|+..| .+.+|+---.||+|..||..+++.+-.+.......+.+ .-+..++|-
T Consensus 246 PWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i---~GLWgL~fG 306 (336)
T TIGR03118 246 PWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKV---DGLWSLTFG 306 (336)
T ss_pred CceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEe---cCeEEeeeC
Confidence 45566655 56777766679999999999998887777665554443 456777774
No 459
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=89.08 E-value=15 Score=32.11 Aligned_cols=268 Identities=12% Similarity=0.021 Sum_probs=0.0
Q ss_pred CCC-----cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc
Q 014154 12 CPP-----LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD 86 (430)
Q Consensus 12 ~~~-----~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~ 86 (430)
|+| +++++++.+|.-.--...- ..+..|. ..+.++...-.-. ++..|-.--.+-+|+.....
T Consensus 9 c~p~~avflv~It~s~~gva~d~~v~~------~~vghfg---~~vsavdv~~~ya----~v~qG~~l~i~ditn~~~~t 75 (370)
T COG5276 9 CIPEYAVFLVLITGSDDGVAVDVHVGY------AYVGHFG---KGVSAVDVRGAYA----YVGQGFILAILDITNVSLQT 75 (370)
T ss_pred CchhheeeEEEEeccccceeeccccce------EEeeecc---CCccccccccccc----ccccCceEeeccccCccccc
Q ss_pred ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceE
Q 014154 87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA 166 (430)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~ 166 (430)
-...+..+.... -+..+.+.. .....+..+.-++|.++..... +..+=.....+.-.
T Consensus 76 ~~~l~~~i~~~~------l~~Dv~vse----------~yvyvad~ssGL~IvDIS~P~s-------P~~~~~lnt~gyay 132 (370)
T COG5276 76 HDVLLSVINARD------LFADVRVSE----------EYVYVADWSSGLRIVDISTPDS-------PTLIGFLNTDGYAY 132 (370)
T ss_pred CcceEEEEehhh------hhheeEecc----------cEEEEEcCCCceEEEeccCCCC-------cceeccccCCceEE
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCC---CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEE
Q 014154 167 FSKVDISEKFSLFGGKGVEVNVWDLDK---CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~d~~i~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (430)
++..+ |++.+++..+.-+.++|+.+ ......+.... ..-..++. .|++...+..|+-+.+-|
T Consensus 133 gv~vs--Gn~aYVadlddgfLivdvsdpssP~lagrya~~~---------~d~~~v~I----SGn~AYvA~~d~GL~ivD 197 (370)
T COG5276 133 GVYVS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPG---------GDTHDVAI----SGNYAYVAWRDGGLTIVD 197 (370)
T ss_pred EEEec--CCEEEEeeccCcEEEEECCCCCCceeeeeeccCC---------CCceeEEE----ecCeEEEEEeCCCeEEEE
Q ss_pred CCCCCcceEEEeecCC-CeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEE-EecCCCCeEEEEeC
Q 014154 244 TSAQRRPVMSFDFRET-PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI-ARHPTLPIIASCGL 321 (430)
Q Consensus 244 ~~~~~~~~~~~~~~~~-~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i-~~~~~~~~l~s~~~ 321 (430)
+.....|+..-.-..+ .+.++..+++ +.+..-.+--+.+-|....+....+-......+.++ .+.-.+++...+..
T Consensus 198 VSnp~sPvli~~~n~g~g~~sv~vsdn--r~y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadg 275 (370)
T COG5276 198 VSNPHSPVLIGSYNTGPGTYSVSVSDN--RAYLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADG 275 (370)
T ss_pred ccCCCCCeEEEEEecCCceEEEEecCC--eeEEEEcccceEEEecCCCCCceEeeccccCCcccccceecccceeeeecc
Q ss_pred CCcEEEEECCC
Q 014154 322 DSYLRFWDIKT 332 (430)
Q Consensus 322 dg~i~iwd~~~ 332 (430)
+.-+-+-|+.+
T Consensus 276 a~gl~~idisn 286 (370)
T COG5276 276 AKGLPIIDISN 286 (370)
T ss_pred ccCceeEeccC
No 460
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.86 E-value=12 Score=30.84 Aligned_cols=172 Identities=16% Similarity=0.113 Sum_probs=94.5
Q ss_pred CCCEEEEEeC--CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEEEEECCCCCc
Q 014154 173 SEKFSLFGGK--GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRR 249 (430)
Q Consensus 173 ~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~ 249 (430)
++.++.+.+. ...|++||+.+++.+++........++ ..++ .-+. +-+..=.+|.-..+|.++.+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~Fg----EGit-------~~gd~~y~LTw~egvaf~~d~~t~~~ 123 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFG----EGIT-------KLGDYFYQLTWKEGVAFKYDADTLEE 123 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccc----ccee-------eccceEEEEEeccceeEEEChHHhhh
Confidence 3455555443 346999999999988775543211111 1111 1122 222234577778888887543
Q ss_pred ceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEee----eeCCCCCCeEEEEecCCCCeEEEEeCCCcE
Q 014154 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC----FIGKCSGSIRSIARHPTLPIIASCGLDSYL 325 (430)
Q Consensus 250 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i 325 (430)
+..+.. ++.-..++ .|+..|+.+....+++.-|.++.....+ +.+..-..++-+.| -+|...|-.=.+..|
T Consensus 124 -lg~~~y-~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I 198 (262)
T COG3823 124 -LGRFSY-EGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRI 198 (262)
T ss_pred -hccccc-CCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecce
Confidence 333332 23334554 3565677776667777777765443332 33322223344555 256555555555567
Q ss_pred EEEECCCCceeeEEEeec---------cccceEEeeeccccccc
Q 014154 326 RFWDIKTRQLLSAVFLKQ---------HLNEVVFDSAFADKEVA 360 (430)
Q Consensus 326 ~iwd~~~~~~~~~~~~~~---------~~~~~v~~~~~s~~g~~ 360 (430)
...|..+|+.+..+.+.+ ....+.+.+++.|++..
T Consensus 199 ~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r 242 (262)
T COG3823 199 ARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDR 242 (262)
T ss_pred EEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCe
Confidence 777788888777654332 12345678888887743
No 461
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.71 E-value=11 Score=34.99 Aligned_cols=102 Identities=10% Similarity=0.058 Sum_probs=66.2
Q ss_pred CcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc---ceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEE
Q 014154 210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286 (430)
Q Consensus 210 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd 286 (430)
+...+.|.++.| ++|.+.|++--.+.+|.+++....+. .....+..+..|....|+.+ .-++..+..| +.+|-
T Consensus 63 m~d~G~I~SIkF--SlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~ 138 (657)
T KOG2377|consen 63 MDDKGEIKSIKF--SLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQ 138 (657)
T ss_pred ecCCCceeEEEe--ccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEE
Confidence 334478999999 89999999999999999999854221 11222333456889999865 4555555555 56665
Q ss_pred ccCC-eEEeeeeCCCCCCeEEEEecCCCCeE
Q 014154 287 IRTG-KLLGCFIGKCSGSIRSIARHPTLPII 316 (430)
Q Consensus 287 ~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l 316 (430)
.... +.++..+.+ ...|.-..|.++-+.+
T Consensus 139 v~pekrslRlVks~-~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 139 VLPEKRSLRLVKSH-NLNVNWYMYCPETAVI 168 (657)
T ss_pred Echhhhhhhhhhhc-ccCccEEEEccccceE
Confidence 4322 223344444 6667777777776543
No 462
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.68 E-value=19 Score=34.13 Aligned_cols=107 Identities=11% Similarity=0.068 Sum_probs=60.0
Q ss_pred cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc-ceEEE----e-ecCCCeEEEEecCCC------CEEEEEe----
Q 014154 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSF----D-FRETPIKAVAEEPDS------FNIYIGN---- 277 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~----~-~~~~~i~~~~~sp~~------~~l~~~~---- 277 (430)
.....++| .|++++|++--..|.|++++..+... .+..+ . ........|+++|+- .+|++..
T Consensus 30 ~~Pw~maf--lPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 30 NKPWALLW--GPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCceEEEE--cCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 34678899 78888777654469999998665322 11111 1 125678899999874 3455442
Q ss_pred ------CCCcEEEEEccCC-------eEE-eeeeCCCCCCeEEEEecCCCCeEEEEeCC
Q 014154 278 ------GSGDLASVDIRTG-------KLL-GCFIGKCSGSIRSIARHPTLPIIASCGLD 322 (430)
Q Consensus 278 ------~d~~i~iwd~~~~-------~~~-~~~~~~~~~~v~~i~~~~~~~~l~s~~~d 322 (430)
....|.-|.+... +.+ ..+.......-..|.|.|||.++++.+..
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1233444544311 111 11211001123567899999876666543
No 463
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.63 E-value=18 Score=34.18 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=37.5
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE--Eeeee----CCCCCCeEEEEecCCC
Q 014154 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL--LGCFI----GKCSGSIRSIARHPTL 313 (430)
Q Consensus 259 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~----~~~~~~v~~i~~~~~~ 313 (430)
...+.|+|.||+++|++--..|.|++++..++.. +..+. .........|+|+|+-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 4568899999998777654469999998655432 22111 1115678999999885
No 464
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.57 E-value=20 Score=33.08 Aligned_cols=155 Identities=13% Similarity=0.116 Sum_probs=86.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014154 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 252 (430)
+|+ |++++.++.++.+|..+++.++...... . ......... ....+..++.++.+.-.|..++.. .-
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~------~~~~~~~v~----~~~~v~~~s~~g~~~al~~~tG~~-~W 177 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-S------PYYASPPVV----GDGTVYVGTDDGHLYALNADTGTL-KW 177 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCC-C------eEEecCcEE----cCcEEEEecCCCeEEEEEccCCcE-EE
Confidence 454 7778999999999999999998877653 0 011111122 223344444678888777776653 22
Q ss_pred EEeecC---CCeEEEEecCCCCEEEEEeC--CCcEEEEEccCCeEEeeeeCCCCCCeEE---EEecCC-----CCeEEEE
Q 014154 253 SFDFRE---TPIKAVAEEPDSFNIYIGNG--SGDLASVDIRTGKLLGCFIGKCSGSIRS---IARHPT-----LPIIASC 319 (430)
Q Consensus 253 ~~~~~~---~~i~~~~~sp~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~---i~~~~~-----~~~l~s~ 319 (430)
...... ..+..--.. ....++.+.. ++.+.-.|..+|........++...-.. ...... +.-+..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~ 256 (370)
T COG1520 178 TYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAG 256 (370)
T ss_pred EEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEE
Confidence 221111 111110011 2235555555 6677788888888876643221111110 111111 1224566
Q ss_pred eCCCcEEEEECCCCceeeEEEe
Q 014154 320 GLDSYLRFWDIKTRQLLSAVFL 341 (430)
Q Consensus 320 ~~dg~i~iwd~~~~~~~~~~~~ 341 (430)
+.++.+...|..+++.+..+..
T Consensus 257 ~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 257 SYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred ecCCeEEEEEcCCCceEEEEec
Confidence 7788899999999999988643
No 465
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.52 E-value=30 Score=35.05 Aligned_cols=91 Identities=15% Similarity=0.144 Sum_probs=56.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCC----------Cee---eEeeCCCCCCCCCCcCCcceeEEEEeec-CCCC
Q 014154 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDK----------CEK---IWTAKPPPKNSLGIFTPTWFTSAAFLSI-DDHR 228 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~----------~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~ 228 (430)
-.|..+.++|+|.+|+..|..|. .|..+.. +.. .+.+.. ....+.......|..+.|+|. .++.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEe-chhhccCCCCceEEEEEEcCCCCCCC
Confidence 46888999999999999888754 4444421 111 011110 000111122356889999532 2357
Q ss_pred EEEEEeCCCcEEEEECCCCCcceEEEe
Q 014154 229 KFVAGTNDHQVRLYDTSAQRRPVMSFD 255 (430)
Q Consensus 229 ~l~s~~~dg~i~iwd~~~~~~~~~~~~ 255 (430)
.|++-+.|+++++||+.....+...+.
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred eEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 888889999999999987666655554
No 466
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.38 E-value=2.7 Score=24.15 Aligned_cols=31 Identities=10% Similarity=0.121 Sum_probs=23.9
Q ss_pred CCCCeEEEEe-CCCcEEEEECCCCceeeEEEe
Q 014154 311 PTLPIIASCG-LDSYLRFWDIKTRQLLSAVFL 341 (430)
Q Consensus 311 ~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~ 341 (430)
|++++|+++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677666554 578999999999988888654
No 467
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.37 E-value=19 Score=32.57 Aligned_cols=151 Identities=15% Similarity=0.116 Sum_probs=85.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCe------EEEEECCC--C--eee-----EeeCCCCCCCCCCcCCcceeEEEEeecCCC
Q 014154 163 GTIAFSKVDISEKFSLFGGKGVE------VNVWDLDK--C--EKI-----WTAKPPPKNSLGIFTPTWFTSAAFLSIDDH 227 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~------i~~~d~~~--~--~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 227 (430)
+.+..+.+.+++..+++.+.+|. ++.+++.. + ..+ ..+.......+.. .....-++++ .+++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~-~~~D~Egi~~--~~~g 96 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPK-NGLDPEGIAV--PPDG 96 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCc-CCCChhHeEE--ecCC
Confidence 55678888876666777777777 66665543 1 011 1111111111100 0013456777 6788
Q ss_pred CEEEEEeCC------CcEEEEECCCCCcceEEEe---------------ecCCCeEEEEecCCCCEEEEEeCCC------
Q 014154 228 RKFVAGTND------HQVRLYDTSAQRRPVMSFD---------------FRETPIKAVAEEPDSFNIYIGNGSG------ 280 (430)
Q Consensus 228 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~---------------~~~~~i~~~~~sp~~~~l~~~~~d~------ 280 (430)
.++++.-.+ ..|..++.. +.. ...+. ..+...-+|+++|+|+.|+++.+..
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~-~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~ 174 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRV-IRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP 174 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-Ccc-cceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence 888877667 788888876 332 22221 1235678999999999777765332
Q ss_pred -c-------EEE--EEccC-CeE----EeeeeCC----CCCCeEEEEecCCCCeEEE
Q 014154 281 -D-------LAS--VDIRT-GKL----LGCFIGK----CSGSIRSIARHPTLPIIAS 318 (430)
Q Consensus 281 -~-------i~i--wd~~~-~~~----~~~~~~~----~~~~v~~i~~~~~~~~l~s 318 (430)
. +++ ||..+ ++. .+.+... ....|..+.+-+++++|+.
T Consensus 175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 444 55544 322 2233210 1467889999999987654
No 468
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.32 E-value=22 Score=33.16 Aligned_cols=108 Identities=14% Similarity=0.031 Sum_probs=62.0
Q ss_pred cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc----ceEEEee--cCCCeEEEEecCCCCEEEEEeCCCcEEEEEc
Q 014154 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR----PVMSFDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~--~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 287 (430)
..+..+.| .+++..++++ ..|.+..- ...+.. ....... ....+..+.|.+++..+++| ..|.+....
T Consensus 281 ~~l~~v~~--~~dg~l~l~g-~~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~- 354 (398)
T PLN00033 281 RRIQNMGW--RADGGLWLLT-RGGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST- 354 (398)
T ss_pred cceeeeeE--cCCCCEEEEe-CCceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-
Confidence 55788888 6777777654 56665432 222221 1222221 12358899999887665555 677666543
Q ss_pred cCCeEEeeee--CCCCCCeEEEEecCCCCeEEEEeCCCcEEEE
Q 014154 288 RTGKLLGCFI--GKCSGSIRSIARHPTLPIIASCGLDSYLRFW 328 (430)
Q Consensus 288 ~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iw 328 (430)
..|+.-.... .......+.+.|.++++.+++| .+|.|.-|
T Consensus 355 D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 355 DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 3444322222 1114568899998777655554 67876554
No 469
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.81 E-value=21 Score=33.84 Aligned_cols=79 Identities=8% Similarity=-0.069 Sum_probs=50.8
Q ss_pred eeEEEEeecCCCCEEEEEeCCCcEEEEECC---------CCCcce--EEE-------e-ecCCCeEEEEecCCC---CEE
Q 014154 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTS---------AQRRPV--MSF-------D-FRETPIKAVAEEPDS---FNI 273 (430)
Q Consensus 216 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~---------~~~~~~--~~~-------~-~~~~~i~~~~~sp~~---~~l 273 (430)
|..+.. ++.|..++..+.+|.+.++=.+ .++..+ +++ . ...-.+..++|+|+. ..|
T Consensus 106 V~~vl~--s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 106 VYQVLL--SPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEe--cCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 455555 8889999988889877665322 121100 111 1 011245678999976 677
Q ss_pred EEEeCCCcEEEEEccCCeEEeee
Q 014154 274 YIGNGSGDLASVDIRTGKLLGCF 296 (430)
Q Consensus 274 ~~~~~d~~i~iwd~~~~~~~~~~ 296 (430)
..-+.|+.||+||+...+.++..
T Consensus 184 ~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred EEEecCcEEEEEecCCcchhhcc
Confidence 77889999999999876655443
No 470
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.32 E-value=28 Score=36.96 Aligned_cols=141 Identities=9% Similarity=0.156 Sum_probs=78.3
Q ss_pred EeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee------cCCCCEEEEEeCCCcEEEEECC----CCCc
Q 014154 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS------IDDHRKFVAGTNDHQVRLYDTS----AQRR 249 (430)
Q Consensus 180 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~l~s~~~dg~i~iwd~~----~~~~ 249 (430)
.+-|+.+.+|+.+++.....+.+.. ..|..+...- -|.=++++.-+.--.|.++-+. ++..
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~s---------htIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~ 165 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLS---------HTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL 165 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchh---------hhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc
Confidence 4567889999999866555544432 1122222210 1111222222333344444322 1111
Q ss_pred c----eEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEc----cCC---e-E----------------EeeeeCCCC
Q 014154 250 P----VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI----RTG---K-L----------------LGCFIGKCS 301 (430)
Q Consensus 250 ~----~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~----~~~---~-~----------------~~~~~~~~~ 301 (430)
. ...+......|.|+....+|+.+++| .|| .+|.+ ..+ + + +..+.+.+.
T Consensus 166 ~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~ 242 (1311)
T KOG1900|consen 166 SIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK 242 (1311)
T ss_pred cccccceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence 0 11222234678899988888877776 555 34433 111 1 0 112232236
Q ss_pred CCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 302 ~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~ 332 (430)
.+|..+.....-..+.+-+..|+|.+||+..
T Consensus 243 dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 243 DPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CcceeeEeccccceeeeeccCceEEEEEccC
Confidence 7899999988888899999999999999975
No 471
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=86.66 E-value=0.51 Score=46.84 Aligned_cols=73 Identities=12% Similarity=0.030 Sum_probs=46.8
Q ss_pred cccCCCC-CCCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeee-------ecCCCCCceeEEeecCCe
Q 014154 5 TTLECPG-CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAAS-------IDDSQNDPLLAVARKNGL 76 (430)
Q Consensus 5 ~~~~~~~-~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~p~g~~l~~g~~dg~ 76 (430)
..+.||- |....+-++..+|.|++-++... ...-+.+|...+.-.++- -.-+|||..+|.+..||.
T Consensus 185 ~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra------~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~ 258 (1283)
T KOG1916|consen 185 LVSWCPIAVNKVYICYGLKGGEIRLLNINRA------LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS 258 (1283)
T ss_pred eeeecccccccceeeeccCCCceeEeeechH------HHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc
Confidence 3445553 33455666788899999888773 334455565543222110 013789999999999999
Q ss_pred EEEecCC
Q 014154 77 TDILNPL 83 (430)
Q Consensus 77 i~iwd~~ 83 (430)
++.|.+.
T Consensus 259 v~f~Qiy 265 (1283)
T KOG1916|consen 259 VGFYQIY 265 (1283)
T ss_pred cceeeee
Confidence 9999764
No 472
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=86.55 E-value=2.1 Score=23.07 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=22.5
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEee
Q 014154 174 EKFSLFGGKGVEVNVWDLDKCEKIWTA 200 (430)
Q Consensus 174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~ 200 (430)
+..+++++.+|.+..+|.++|+.+++.
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 336788899999999999999888764
No 473
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=86.21 E-value=33 Score=33.01 Aligned_cols=100 Identities=14% Similarity=0.148 Sum_probs=63.0
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEEccC-CeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCcee
Q 014154 258 ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (430)
Q Consensus 258 ~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 336 (430)
...|+.+++..++ .+..|+..+-+-.|+..+ +..+....+...++|..+.=.|+++ |..|+.+|.++. +.+.++..
T Consensus 375 g~nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~-~pe~~~v~ 451 (671)
T COG3292 375 GMNITTTLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-DPESGRVL 451 (671)
T ss_pred ccccchhhhccCC-cEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec-Cccccchh
Confidence 3567777776644 556666664466677666 4445455554467888888889888 778888885543 44444444
Q ss_pred eEEEeecc--ccceEEeeeccccccc
Q 014154 337 SAVFLKQH--LNEVVFDSAFADKEVA 360 (430)
Q Consensus 337 ~~~~~~~~--~~~~v~~~~~s~~g~~ 360 (430)
..+.+..+ ....+..+.+.|+|++
T Consensus 452 n~ln~~~~~l~~s~~~~lg~~~~g~L 477 (671)
T COG3292 452 NLLNPGSHGLDGSRVEQLGLGPDGRL 477 (671)
T ss_pred cccccccCcCCcchhhhhccCCCCce
Confidence 43322222 2344678889999998
No 474
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=85.81 E-value=9.9 Score=26.63 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=29.6
Q ss_pred EeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEE
Q 014154 276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 276 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~ 319 (430)
+..+|.+..||..+++..-.+.+ -.-.+.|++++|+.+|+.+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~--L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG--LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE--ESSEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhC--CCccCeEEEcCCCCEEEEE
Confidence 34568899999999887555555 3467899999999987766
No 475
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=85.77 E-value=54 Score=35.10 Aligned_cols=75 Identities=21% Similarity=0.402 Sum_probs=45.2
Q ss_pred CcccCCCCCCC----cc-----eeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecC
Q 014154 4 TTTLECPGCPP----LR-----ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN 74 (430)
Q Consensus 4 ~~~~~~~~~~~----~~-----l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~d 74 (430)
...++||.|.. .+ .++...||.+.|=|..- +.+........+++.+...+....-|||..--|
T Consensus 347 qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfNy--------IRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvd 418 (1899)
T KOG4659|consen 347 QRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFNY--------IRRISQDGQVSTILTLGLTDTSHSYYIAVSPVD 418 (1899)
T ss_pred cccccCCCCCCccccceeeceeeEEEcCCCcEEEccchh--------eeeecCCCceEEEEEecCCCccceeEEEecCcC
Confidence 34578999974 22 34567899998877654 222222233344555554323233467777889
Q ss_pred CeEEEecCCCCc
Q 014154 75 GLTDILNPLNGD 86 (430)
Q Consensus 75 g~i~iwd~~~~~ 86 (430)
|++.|=|..+.+
T Consensus 419 gtlyvSdp~s~q 430 (1899)
T KOG4659|consen 419 GTLYVSDPLSKQ 430 (1899)
T ss_pred ceEEecCCCcce
Confidence 999888875444
No 476
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.76 E-value=4.9 Score=37.03 Aligned_cols=156 Identities=8% Similarity=0.039 Sum_probs=91.4
Q ss_pred cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe-ecCC----CeE-EEEecCCCCEEEEEeCCCcEEEE-E
Q 014154 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRET----PIK-AVAEEPDSFNIYIGNGSGDLASV-D 286 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~----~i~-~~~~sp~~~~l~~~~~d~~i~iw-d 286 (430)
..+..+-. .|+++.+..-+. ..+.++++.+.....+.+- ...+ .|+ ++..-..|.-+++++.||.|.-| |
T Consensus 221 ~~v~qllL--~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 221 SDVSQLLL--TPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred cchHhhEE--CCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 44555666 899998877554 6888998875321111111 1111 122 12222356678888999998876 6
Q ss_pred ccCCe-----EEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccccccc
Q 014154 287 IRTGK-----LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVAN 361 (430)
Q Consensus 287 ~~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~ 361 (430)
.+.+. .++.++-. ..++..+.-..+.+-+++-...|++.++.....+.+-. ..- -.....+++||++.++
T Consensus 298 vr~~~~p~l~h~R~f~l~-pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~---~~~-~~~~~~~~~Sp~~~~L 372 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLA-PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF---ERA-YQAPQLVAMSPNQAYL 372 (733)
T ss_pred eecCCCCcceeeeccccC-cccceeeccccccceEEEEcCCCceeeeecccCcceeh---hhh-hcCcceeeeCcccchh
Confidence 55332 12222222 23444443333445677778889998887655444432 111 1123668999999998
Q ss_pred ccCCCCceEecCCCCC
Q 014154 362 AAADAPMLEIQNGNDT 377 (430)
Q Consensus 362 ~~~~d~~i~~~~~~~~ 377 (430)
..-+.|.++++..+..
T Consensus 373 l~e~~gki~~~~l~Nr 388 (733)
T COG4590 373 LSEDQGKIRLAQLENR 388 (733)
T ss_pred eeecCCceEEEEecCC
Confidence 8888899999877653
No 477
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=85.16 E-value=37 Score=32.66 Aligned_cols=141 Identities=15% Similarity=0.111 Sum_probs=71.4
Q ss_pred CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCC-
Q 014154 182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP- 260 (430)
Q Consensus 182 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~- 260 (430)
......++|. .|...+.+..... ....+.. -++|.+++... ..+..+|+.. + .+.........
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~---------~~~~~~~--l~nG~ll~~~~--~~~~e~D~~G-~-v~~~~~l~~~~~ 189 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSG---------SDNSFKQ--LPNGNLLIGSG--NRLYEIDLLG-K-VIWEYDLPGGYY 189 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT-----------SSEEE---TTS-EEEEEB--TEEEEE-TT----EEEEEE--TTEE
T ss_pred CCceEEEECC-CccEEEEEccCcc---------ccceeeE--cCCCCEEEecC--CceEEEcCCC-C-EEEeeecCCccc
Confidence 3445666665 3555555443221 1111333 57888776554 7888888874 3 23433332211
Q ss_pred --eEEEEecCCCCEEEEEeC-------------CCcEEEEEccCCeEEeeeeC--CC----C------------------
Q 014154 261 --IKAVAEEPDSFNIYIGNG-------------SGDLASVDIRTGKLLGCFIG--KC----S------------------ 301 (430)
Q Consensus 261 --i~~~~~sp~~~~l~~~~~-------------d~~i~iwd~~~~~~~~~~~~--~~----~------------------ 301 (430)
-..+..-|+|++|+.+.. ...|..+| .+|+.+..+.. |. .
T Consensus 190 ~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~ 268 (477)
T PF05935_consen 190 DFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGR 268 (477)
T ss_dssp -B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTS
T ss_pred ccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCC
Confidence 245667899999988872 12355666 67776655321 10 0
Q ss_pred --CCeEEEEecC-CCCeEEEEeCCCcEEEEECCCCceeeEE
Q 014154 302 --GSIRSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 302 --~~v~~i~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 339 (430)
-.++++.+.+ ++.+|+|+-.-..|...|.++++....+
T Consensus 269 DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 269 DWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp BS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred CccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 2478999988 5555555544558999998899888763
No 478
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=85.14 E-value=37 Score=32.67 Aligned_cols=110 Identities=14% Similarity=0.234 Sum_probs=63.2
Q ss_pred eeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee-cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEe
Q 014154 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG 294 (430)
Q Consensus 216 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 294 (430)
|+.+.+ .. ...+-.++...-+..|+..+...+.....+ ..++|..+.=.|+++ |..|+.+|.++. +.+.++...
T Consensus 378 it~~~~--d~-~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~-~pe~~~v~n 452 (671)
T COG3292 378 ITTTLE--DS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-DPESGRVLN 452 (671)
T ss_pred cchhhh--cc-CCcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec-Cccccchhc
Confidence 555556 33 345555666655566666652222222222 346788888888887 888988886654 445544443
Q ss_pred eeeC--C--CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154 295 CFIG--K--CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 295 ~~~~--~--~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~ 332 (430)
.+.. | ..+.|..+.+-|+|++-+.. .+| |..|+.+.
T Consensus 453 ~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~-g~g-va~~~sq~ 492 (671)
T COG3292 453 LLNPGSHGLDGSRVEQLGLGPDGRLWLAA-GSG-VAAWESQR 492 (671)
T ss_pred ccccccCcCCcchhhhhccCCCCceEEEe-cce-eeeecccc
Confidence 3321 1 13457778888999753333 344 56676543
No 479
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.67 E-value=0.065 Score=49.06 Aligned_cols=141 Identities=10% Similarity=0.071 Sum_probs=94.2
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEE-EEEeCCCcEEEEEccCCeEE-eeeeCCCC
Q 014154 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI-YIGNGSGDLASVDIRTGKLL-GCFIGKCS 301 (430)
Q Consensus 224 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l-~~~~~d~~i~iwd~~~~~~~-~~~~~~~~ 301 (430)
.+.+.-++.++.+..+..||-.. +. ..... ..+....++|..++..+ +.+-..+.+.+||+.+.... ..+.+.
T Consensus 43 ~~e~~nlavaca~tiv~~YD~ag-q~-~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~-- 117 (615)
T KOG2247|consen 43 RPEGHNLAVACANTIVIYYDKAG-QV-ILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGT-- 117 (615)
T ss_pred ecCCCceehhhhhhHHHhhhhhc-ce-ecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCc--
Confidence 56666688888898999998764 21 22222 23455667777776544 44556788999999754321 122222
Q ss_pred CCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEec
Q 014154 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQ 372 (430)
Q Consensus 302 ~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~ 372 (430)
..-.-+.|++....++.+-..|.+.|++..+.+.+.. ...|. ..+..+++.+.+..+..+.|..+.+-
T Consensus 118 ~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv--~Gkh~-RRgtq~av~lEd~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 118 SSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIV--MGKHQ-RRGTQIAVTLEDYVILCDCDNTLSVT 185 (615)
T ss_pred chHHHHhhccCCccccccccccceEEEeccchhhhhh--hcccc-cceeEEEecccceeeecCcHHHHHHh
Confidence 2223378999999999998999999999887776654 33353 34588999998887777777665443
No 480
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=84.49 E-value=32 Score=33.10 Aligned_cols=132 Identities=11% Similarity=0.076 Sum_probs=65.6
Q ss_pred CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCC---eEEEEecC
Q 014154 235 NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS---IRSIARHP 311 (430)
Q Consensus 235 ~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---v~~i~~~~ 311 (430)
..+...++|... . .+..+.........+...++|.+++... ..+..+|+ .|+.+..+... ... =..+..-|
T Consensus 126 ~~~~~~~iD~~G-~-Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~-~G~v~~~~~l~-~~~~~~HHD~~~l~ 199 (477)
T PF05935_consen 126 SSSYTYLIDNNG-D-VRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDL-LGKVIWEYDLP-GGYYDFHHDIDELP 199 (477)
T ss_dssp BEEEEEEEETTS---EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-T-T--EEEEEE---TTEE-B-S-EEE-T
T ss_pred CCceEEEECCCc-c-EEEEEccCccccceeeEcCCCCEEEecC--CceEEEcC-CCCEEEeeecC-CcccccccccEECC
Confidence 345566666653 2 2333332211111156678888776554 78889998 57765555432 111 24567789
Q ss_pred CCCeEEEEe--------------CCCcEEEEECCCCceeeEEEeecccc------------------------ceEEeee
Q 014154 312 TLPIIASCG--------------LDSYLRFWDIKTRQLLSAVFLKQHLN------------------------EVVFDSA 353 (430)
Q Consensus 312 ~~~~l~s~~--------------~dg~i~iwd~~~~~~~~~~~~~~~~~------------------------~~v~~~~ 353 (430)
+|++|+.+. .| .|..+| .+|+.+..+.+..|.. .-+.++.
T Consensus 200 nGn~L~l~~~~~~~~~~~~~~~~~D-~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~ 277 (477)
T PF05935_consen 200 NGNLLILASETKYVDEDKDVDTVED-VIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSID 277 (477)
T ss_dssp TS-EEEEEEETTEE-TS-EE---S--EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEE
T ss_pred CCCEEEEEeecccccCCCCccEecC-EEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccE
Confidence 999988777 23 366777 7888877765544431 1156778
Q ss_pred ccc-cccc-cccCCCCceEecCC
Q 014154 354 FAD-KEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 354 ~s~-~g~~-~~~~~d~~i~~~~~ 374 (430)
+.+ ++.+ +++-.-..|...+.
T Consensus 278 yd~~dd~iivSsR~~s~V~~Id~ 300 (477)
T PF05935_consen 278 YDPSDDSIIVSSRHQSAVIKIDY 300 (477)
T ss_dssp EETTTTEEEEEETTT-EEEEEE-
T ss_pred EeCCCCeEEEEcCcceEEEEEEC
Confidence 877 5555 44444446666663
No 481
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=84.39 E-value=53 Score=33.78 Aligned_cols=206 Identities=12% Similarity=0.093 Sum_probs=0.0
Q ss_pred cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc--CCCCEEEEEeCC---CeEEEEECCCC
Q 014154 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD--ISEKFSLFGGKG---VEVNVWDLDKC 194 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d---~~i~~~d~~~~ 194 (430)
+....-+++....|.+.+|-..............++... .....|+..++. .+|+.++.++.+ +.|++|.+.-.
T Consensus 59 ~~~K~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~-~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~ 137 (753)
T PF11635_consen 59 GPAKSACIAVTRNGLLKLWYQKPDGQWNESSTAELESLG-SSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQID 137 (753)
T ss_pred CCCceEEEEEecCCeEEEEEEcCCCccceeehhhhcccc-ccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEe
Q ss_pred ee-------------eEeeCCCCCCCCCCcCCc-----------ceeEEEEee----cCCCCEEEEEeC-----CCcEEE
Q 014154 195 EK-------------IWTAKPPPKNSLGIFTPT-----------WFTSAAFLS----IDDHRKFVAGTN-----DHQVRL 241 (430)
Q Consensus 195 ~~-------------~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~----~~~~~~l~s~~~-----dg~i~i 241 (430)
-. +................+ .++.+.|.+ ......++.+.. ...|.-
T Consensus 138 W~~~~~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~R 217 (753)
T PF11635_consen 138 WNAKPQQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIER 217 (753)
T ss_pred ccCcCccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEE
Q ss_pred EECCCCCcceEEEeecC-------------------------CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeee
Q 014154 242 YDTSAQRRPVMSFDFRE-------------------------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF 296 (430)
Q Consensus 242 wd~~~~~~~~~~~~~~~-------------------------~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 296 (430)
|.++....+++..-..- ..|.++....-+.+++....||+|.++|..+.+.+...
T Consensus 218 weL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~ 297 (753)
T PF11635_consen 218 WELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNET 297 (753)
T ss_pred EEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhccc
Q ss_pred ----eCC--------------CCCCeEEEEecCCCCeEEEEeCCCcEE
Q 014154 297 ----IGK--------------CSGSIRSIARHPTLPIIASCGLDSYLR 326 (430)
Q Consensus 297 ----~~~--------------~~~~v~~i~~~~~~~~l~s~~~dg~i~ 326 (430)
... ....+..++|||++-.++.-..+|.+.
T Consensus 298 ~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 298 RTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred ccccCCccccccccccccccccCCCCceEEECcccceEEEEecCCCce
No 482
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=84.25 E-value=2.5 Score=23.97 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=24.4
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEeeCCC
Q 014154 176 FSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 176 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 203 (430)
.++.++.+|.|+..|.++|+.++.++..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 4667799999999999999999988764
No 483
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=83.75 E-value=40 Score=31.96 Aligned_cols=139 Identities=19% Similarity=0.181 Sum_probs=80.7
Q ss_pred EEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC--------CCEEEEEeCCCeEEEEECCC-CeeeE
Q 014154 128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--------EKFSLFGGKGVEVNVWDLDK-CEKIW 198 (430)
Q Consensus 128 ~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~--------~~~l~~~~~d~~i~~~d~~~-~~~~~ 198 (430)
.+...+.+.-.++..+. .|.-|++... + -+.|.|. .+.| +|-.+..|.-.|.+- |..+.
T Consensus 485 dg~~~~kLykmDIErGk--------vveeW~~~dd--v-vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 485 DGGERDKLYKMDIERGK--------VVEEWDLKDD--V-VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred cCCCcccceeeecccce--------eeeEeecCCc--c-eeecCCchhHHhcCccceE-EeecccceEEecccccCCcee
Confidence 33444455555555443 6778886533 3 5566663 2334 455555666566543 32222
Q ss_pred eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC
Q 014154 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG 278 (430)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 278 (430)
...... + .......+..- ....+++.++..|.|++||--. ......+++-...|..|..+.+|.++++.+
T Consensus 553 v~esKd---Y--~tKn~Fss~~t---TesGyIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTC- 622 (776)
T COG5167 553 VVESKD---Y--KTKNKFSSGMT---TESGYIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATC- 622 (776)
T ss_pred eeeehh---c--ccccccccccc---ccCceEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEee-
Confidence 211110 0 00011222222 2345899999999999999654 333456677778999999999999888765
Q ss_pred CCcEEEEEcc
Q 014154 279 SGDLASVDIR 288 (430)
Q Consensus 279 d~~i~iwd~~ 288 (430)
..+|.+-|++
T Consensus 623 k~yllL~d~~ 632 (776)
T COG5167 623 KNYLLLTDVP 632 (776)
T ss_pred cceEEEEecc
Confidence 4567777765
No 484
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.54 E-value=51 Score=32.94 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=40.3
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC
Q 014154 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (430)
Q Consensus 259 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~ 313 (430)
+.+..+..||+.++|+.=..+|.|.+-+....+.+..+......+.-.++|.-+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 5678889999999999999999999998887777777663212333355664443
No 485
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=83.39 E-value=3.2 Score=22.35 Aligned_cols=25 Identities=32% Similarity=0.760 Sum_probs=21.3
Q ss_pred EEEEEeCCCcEEEEEccCCeEEeee
Q 014154 272 NIYIGNGSGDLASVDIRTGKLLGCF 296 (430)
Q Consensus 272 ~l~~~~~d~~i~iwd~~~~~~~~~~ 296 (430)
.+++++.++.+..+|.++|+.+.++
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 6788889999999999999887654
No 486
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=83.37 E-value=29 Score=30.05 Aligned_cols=211 Identities=12% Similarity=0.023 Sum_probs=125.0
Q ss_pred CcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEE
Q 014154 151 CSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF 230 (430)
Q Consensus 151 ~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 230 (430)
.|.+..+-+..+..-..+...|++..-++-+.. -|.-.|-++.+.. ++.....+ .........| .+.|++-
T Consensus 92 tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt-~f~lp~~~-----a~~nlet~vf--D~~G~lW 162 (353)
T COG4257 92 TGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT-RFPLPLEH-----ADANLETAVF--DPWGNLW 162 (353)
T ss_pred CCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE-Eeeccccc-----CCCcccceee--CCCccEE
Confidence 356777777777777888888888777654444 4555566554332 12111111 0144667778 8888888
Q ss_pred EEEeCCCcEEEEECCCCCcceEEEeec-CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC--CCCCeEEE
Q 014154 231 VAGTNDHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK--CSGSIRSI 307 (430)
Q Consensus 231 ~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~i 307 (430)
+++. .|.---.|... ..+..+... ...-+.|+..|+|..-++.-.++.|-..|..++.. .++... ....-..+
T Consensus 163 Ft~q-~G~yGrLdPa~--~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~a-ev~p~P~~~~~gsRri 238 (353)
T COG4257 163 FTGQ-IGAYGRLDPAR--NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRI 238 (353)
T ss_pred Eeec-cccceecCccc--CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCc-ceecCCCccccccccc
Confidence 8765 22222222222 224444432 23457788899999888888888888888877733 222211 02234556
Q ss_pred EecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 308 ARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 308 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
--+|.++.-+|....+.+..||..+.. -..+.+.+. ...-.++.....|+. ++-.+-|.|.-||...
T Consensus 239 wsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs-~arpys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 239 WSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGS-KARPYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred ccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCC-CCCcceeeeccCCcEEeeccccCceeecCccc
Confidence 667888888887788889999877544 333445554 222355555555555 5555556666665443
No 487
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.96 E-value=58 Score=34.61 Aligned_cols=75 Identities=16% Similarity=0.163 Sum_probs=45.6
Q ss_pred EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCC
Q 014154 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 254 ~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~ 333 (430)
+..+..++.+..+...... +.+..-+.+-+|+.........+... ...+++++..++++..||.+..||...+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 194 LSLIEYESLQVLYYSPTKI-LIGFNRGLVVIKDRASKYVQSAYLPN------GQLESRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred ccccccccceeeeecCCCc-ceeeeeeeeeehhcccccchhhcccc------cccCccCCceEEEEEecCCEEeeecCCC
Confidence 3344556666555433333 33445566677765444333333321 1112788999999999999999999887
Q ss_pred ce
Q 014154 334 QL 335 (430)
Q Consensus 334 ~~ 335 (430)
..
T Consensus 267 ~~ 268 (993)
T KOG1983|consen 267 KL 268 (993)
T ss_pred ce
Confidence 55
No 488
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=82.62 E-value=31 Score=29.74 Aligned_cols=72 Identities=10% Similarity=-0.030 Sum_probs=53.1
Q ss_pred CCCeEEEEecC------CC-CeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecc-ccccccccCCCCceEec
Q 014154 301 SGSIRSIARHP------TL-PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFA-DKEVANAAADAPMLEIQ 372 (430)
Q Consensus 301 ~~~v~~i~~~~------~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~~~~~~d~~i~~~ 372 (430)
...|+|++--. +. ..|+.|.++|.|+|.|.+....+..+.+.+-...+...-.|. -|.++++++.||.|.+.
T Consensus 176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 34677776432 11 479999999999999999888888876665544445555675 77788999999998864
No 489
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=82.45 E-value=37 Score=30.59 Aligned_cols=107 Identities=10% Similarity=0.051 Sum_probs=53.1
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCCcc--eEEEeecCCCe--EEEEecCCCCEEEEEeC-----CCcEEEEEccCCe
Q 014154 226 DHRKFVAGTND-----HQVRLYDTSAQRRP--VMSFDFRETPI--KAVAEEPDSFNIYIGNG-----SGDLASVDIRTGK 291 (430)
Q Consensus 226 ~~~~l~s~~~d-----g~i~iwd~~~~~~~--~~~~~~~~~~i--~~~~~sp~~~~l~~~~~-----d~~i~iwd~~~~~ 291 (430)
++.+++.|+.+ ..+..||+.+..-. ...+..-..+. .+++. -++++.+.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45667777754 35667777653310 11111100111 12222 24556666664 2468889988765
Q ss_pred EEe--eeeCCCCCCeEEEEecCCCCeEEEEeCCC----cEEEEECCCCce
Q 014154 292 LLG--CFIGKCSGSIRSIARHPTLPIIASCGLDS----YLRFWDIKTRQL 335 (430)
Q Consensus 292 ~~~--~~~~~~~~~v~~i~~~~~~~~l~s~~~dg----~i~iwd~~~~~~ 335 (430)
-.. .+... ......+...++.+.+.|+.++ .+.+||..+.+-
T Consensus 151 W~~~~~~p~~--~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 151 WFELPDFPGE--PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eeECCCCCCC--CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 322 22211 1112222233667778887664 356888876543
No 490
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=82.21 E-value=4.2 Score=39.94 Aligned_cols=67 Identities=7% Similarity=0.092 Sum_probs=46.3
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEE
Q 014154 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD 329 (430)
Q Consensus 259 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd 329 (430)
..++++.-+|.++.++.++.||.|++|+....+....... ..+-..+.|...| |+++..|..+.-|.
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~--~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE--AKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh--cCCccceeeeccc--eEEEeccchhheee
Confidence 3567788889999999999999999999865444222221 2344566675554 56666777777775
No 491
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=81.05 E-value=4.5 Score=22.86 Aligned_cols=27 Identities=37% Similarity=0.626 Sum_probs=23.6
Q ss_pred EEEEEeCCCcEEEEEccCCeEEeeeeC
Q 014154 272 NIYIGNGSGDLASVDIRTGKLLGCFIG 298 (430)
Q Consensus 272 ~l~~~~~d~~i~iwd~~~~~~~~~~~~ 298 (430)
.+++++.+|.|+-.|.++|+.+..+..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 466778999999999999999988875
No 492
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=80.99 E-value=22 Score=28.59 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=25.1
Q ss_pred CCeEEEEecCCC------CEEEEEeCCCcEEEEEccC
Q 014154 259 TPIKAVAEEPDS------FNIYIGNGSGDLASVDIRT 289 (430)
Q Consensus 259 ~~i~~~~~sp~~------~~l~~~~~d~~i~iwd~~~ 289 (430)
..+.+++|||.| -+|++-+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999955 4678888999999997653
No 493
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=80.64 E-value=74 Score=32.85 Aligned_cols=169 Identities=13% Similarity=0.115 Sum_probs=94.8
Q ss_pred ceEEeeecCCCceEEEEEc---C----CCCEEEEEeCCCeEEEEECCCC---------------eeeEeeCCCCCCCCCC
Q 014154 153 TVKSWNVCASGTIAFSKVD---I----SEKFSLFGGKGVEVNVWDLDKC---------------EKIWTAKPPPKNSLGI 210 (430)
Q Consensus 153 ~i~~~~~~~~~~i~~~~~~---~----~~~~l~~~~~d~~i~~~d~~~~---------------~~~~~~~~~~~~~~~~ 210 (430)
.-..|.+..+.+|..|+|. . ..++|++ -....+.|+...-. .++..+.....
T Consensus 70 ~~~~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~t----- 143 (765)
T PF10214_consen 70 LSGAWSIDDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDT----- 143 (765)
T ss_pred ccceeEcCCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhc-----
Confidence 3345776778999999998 2 2235554 44557777773211 11222221110
Q ss_pred cCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC----cceEEEeecCC----------CeEEEEecCCCCEEEEE
Q 014154 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR----RPVMSFDFRET----------PIKAVAEEPDSFNIYIG 276 (430)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~----------~i~~~~~sp~~~~l~~~ 276 (430)
.......++|. +.+...||+....|...||++.... ........+.+ .-..|.|.++.+.|+++
T Consensus 144 -gg~~~aDv~Fn-P~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~ 221 (765)
T PF10214_consen 144 -GGFPHADVAFN-PWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVC 221 (765)
T ss_pred -CCCccceEEec-cCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEE
Confidence 11345678884 2345589999999999999992111 11111111112 23367888888788877
Q ss_pred eCCCcEEEEEccCCeEEe-eeeCCCCCCeEEEEecCC--CCeEEEEeCCCcEEEEECCC
Q 014154 277 NGSGDLASVDIRTGKLLG-CFIGKCSGSIRSIARHPT--LPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 277 ~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~i~iwd~~~ 332 (430)
+ ...+.++|+.+..... .........|..+.-+|. +..++-. ...|...++..
T Consensus 222 ~-r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 222 N-RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred c-CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 5 4568899998776533 222212467888877776 2222222 23455555554
No 494
>PLN02193 nitrile-specifier protein
Probab=80.57 E-value=56 Score=31.40 Aligned_cols=106 Identities=16% Similarity=0.192 Sum_probs=54.3
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCCcceEEEeec----CCC-eEEEEecCCCCEEEEEeCC-----CcEEEEEccCC
Q 014154 226 DHRKFVAGTND-----HQVRLYDTSAQRRPVMSFDFR----ETP-IKAVAEEPDSFNIYIGNGS-----GDLASVDIRTG 290 (430)
Q Consensus 226 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~----~~~-i~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~ 290 (430)
++.+.+.|+.+ ..+..||+.+.. ...+... ... -.+++. -++++++.|+.+ ..+..||+.+.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~--W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNE--WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCE--EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCC
Confidence 55666777654 358888988632 2222110 011 112222 245566666654 34678888776
Q ss_pred eEEeeee-C---CCCCCeEEEEecCCCCeEEEEeCC----CcEEEEECCCCcee
Q 014154 291 KLLGCFI-G---KCSGSIRSIARHPTLPIIASCGLD----SYLRFWDIKTRQLL 336 (430)
Q Consensus 291 ~~~~~~~-~---~~~~~v~~i~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~ 336 (430)
+-...-. + ........+.+ ++++++.++.+ ..+.+||+.+.+-.
T Consensus 305 ~W~~~~~~~~~~~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~W~ 356 (470)
T PLN02193 305 KWFHCSTPGDSFSIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDKWT 356 (470)
T ss_pred EEEeCCCCCCCCCCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCCEEE
Confidence 5432110 0 00111122222 56777777755 45899999876543
No 495
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=80.55 E-value=14 Score=29.73 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=26.2
Q ss_pred CCeEEEEecCCC------CeEEEEeCCCcEEEEECCCC
Q 014154 302 GSIRSIARHPTL------PIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 302 ~~v~~i~~~~~~------~~l~s~~~dg~i~iwd~~~~ 333 (430)
..+..++|||.| -+|++...++.|.||.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 478999999965 36888899999999987643
No 496
>PLN02153 epithiospecifier protein
Probab=80.42 E-value=46 Score=30.30 Aligned_cols=105 Identities=16% Similarity=0.216 Sum_probs=52.1
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCCcceEEEee------cCCC-eEEEEecCCCCEEEEEeCC-----------CcE
Q 014154 226 DHRKFVAGTND-----HQVRLYDTSAQRRPVMSFDF------RETP-IKAVAEEPDSFNIYIGNGS-----------GDL 282 (430)
Q Consensus 226 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~------~~~~-i~~~~~sp~~~~l~~~~~d-----------~~i 282 (430)
++.+++.|+.+ ..+.+||+.+.. -..+.. .... -.+++. -++++++.|+.+ ..|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v 161 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNE--WTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTI 161 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCE--EEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceE
Confidence 56677777653 357788987632 122211 1111 112222 345666666643 247
Q ss_pred EEEEccCCeEEeeeeCC-----CCCCeEEEEecCCCCeEEEEeCC-------------CcEEEEECCCCcee
Q 014154 283 ASVDIRTGKLLGCFIGK-----CSGSIRSIARHPTLPIIASCGLD-------------SYLRFWDIKTRQLL 336 (430)
Q Consensus 283 ~iwd~~~~~~~~~~~~~-----~~~~v~~i~~~~~~~~l~s~~~d-------------g~i~iwd~~~~~~~ 336 (430)
.+||..+.+-.. +... .......+.+ ++++++.++.+ ..|.+||+.+.+-.
T Consensus 162 ~~yd~~~~~W~~-l~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 162 EAYNIADGKWVQ-LPDPGENFEKRGGAGFAVV--QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred EEEECCCCeEee-CCCCCCCCCCCCcceEEEE--CCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence 788988765322 1110 0111122223 55666655432 35888998766543
No 497
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=80.16 E-value=41 Score=29.61 Aligned_cols=113 Identities=19% Similarity=0.191 Sum_probs=61.9
Q ss_pred CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe------CCCcEEEEECCCCCcceEEEeec
Q 014154 184 VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT------NDHQVRLYDTSAQRRPVMSFDFR 257 (430)
Q Consensus 184 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~ 257 (430)
..|++||..+.+=......- ...|+.+.| ..+.++++.|. ....+..||+.+.. ...+...
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i---------~G~V~~l~~--~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~--w~~~~~~ 82 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGI---------SGTVTDLQW--ASNNQLLVGGNFTLNGTNSSNLATYDFKNQT--WSSLGGG 82 (281)
T ss_pred CEEEEEECCCCEeecCCCCc---------eEEEEEEEE--ecCCEEEEEEeeEECCCCceeEEEEecCCCe--eeecCCc
Confidence 46899998764432221111 267999999 44555666654 34568899998643 3344442
Q ss_pred -----CCCeEEEEecC-CC-CEEEEEe-C--CCcEEEEEccCCeEEee-eeCCCCCCeEEEEec
Q 014154 258 -----ETPIKAVAEEP-DS-FNIYIGN-G--SGDLASVDIRTGKLLGC-FIGKCSGSIRSIARH 310 (430)
Q Consensus 258 -----~~~i~~~~~sp-~~-~~l~~~~-~--d~~i~iwd~~~~~~~~~-~~~~~~~~v~~i~~~ 310 (430)
.++|..+.+.. |+ ++.+.|. . +..|..||=.+...+.. .... ...|..+.+-
T Consensus 83 ~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~-~t~I~~l~~~ 145 (281)
T PF12768_consen 83 SSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGS-GTTIRGLQVL 145 (281)
T ss_pred ccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCC-CCEEEEEEEE
Confidence 36788887732 33 3444443 2 34467777555444433 2221 3445555443
No 498
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=79.93 E-value=61 Score=31.46 Aligned_cols=262 Identities=13% Similarity=0.158 Sum_probs=114.4
Q ss_pred CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCC--eEEEecCCCCccccee
Q 014154 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNG--LTDILNPLNGDLRVAI 91 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg--~i~iwd~~~~~~~~~~ 91 (430)
..+++-++++|.+..-.+..... .-.+..++.-.....++.+.-.+ +.+|+.|+.-| .+.-|....-+.+..+
T Consensus 222 ~~~~lL~~e~G~l~~l~l~~~~~--~i~i~~~g~~~~~~s~l~~l~~g---~d~lf~gs~~gds~l~~~~~~~l~~~~~~ 296 (504)
T PF10433_consen 222 GDRILLQDEDGDLYLLTLDNDGG--SISITYLGTLCSIASSLTYLKNG---GDYLFVGSEFGDSQLLQISLSNLEVLDSL 296 (504)
T ss_dssp SSEEEEEETTSEEEEEEEEEEEE--EEEEEEEEE--S-ESEEEEESTT-----EEEEEESSS-EEEEEEESESEEEEEEE
T ss_pred CCEEEEEeCCCeEEEEEEEECCC--eEEEEEcCCcCChhheEEEEcCC---CEEEEEEEecCCcEEEEEeCCCcEEEEec
Confidence 35788889999998888776411 00222232212222233332211 34777777544 4555553333444444
Q ss_pred eccCCCCCCCCCCceEEEEEeecCccccc--ccCceEEEEc---cCCeeEEEEeeecCc----cccCCCcceEEeeecCC
Q 014154 92 SNAGDSGAQPEDDGIVGLHLFKRQREESS--SRSRTLLTCT---TKGKASMRSIEVTKV----SAESSCSTVKSWNVCAS 162 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~---~~g~~~v~~~~~~~~----~~~~~~~~i~~~~~~~~ 162 (430)
... .++..+.+.+....... .....+++++ .+|.+++..-..... ......+.-.+|.+.
T Consensus 297 ~N~---------~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~-- 365 (504)
T PF10433_consen 297 PNW---------GPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLK-- 365 (504)
T ss_dssp -------------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE---
T ss_pred cCc---------CCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEee--
Confidence 433 57888887765331100 0001556554 344555554221110 000111233334332
Q ss_pred CceEEEEEcC-CCCEEEEEeCCCeEEEEECC---CCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCc
Q 014154 163 GTIAFSKVDI-SEKFSLFGGKGVEVNVWDLD---KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238 (430)
Q Consensus 163 ~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 238 (430)
... +..+|+.+..+ .-+++.+. ..+.+...... . +.. ....+.+..+ . +..++=.+.. .
T Consensus 366 -------~~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~-~--f~~-~~~Tl~~~~~---~-~~~ivQVt~~-~ 428 (504)
T PF10433_consen 366 -------LSSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEED-G--FDT-DEPTLAAGNV---G-DGRIVQVTPK-G 428 (504)
T ss_dssp -------SSSSSBSEEEEEESS-EEEEEEES----SSEEEEE----T--S-S-SS-EEEEEEE---T-TTEEEEEESS-E
T ss_pred -------ecCCCceEEEEEcCC-ceEEEEEecccCCcchhhhhhc-c--CCC-CCCCeEEEEc---C-CCeEEEEecC-e
Confidence 222 25566665555 44555553 33343333111 0 000 0122333333 2 4455544443 4
Q ss_pred EEEEECCCCCcceEEEee-cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC----CCCCeEEEEecC
Q 014154 239 VRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK----CSGSIRSIARHP 311 (430)
Q Consensus 239 i~iwd~~~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~i~~~~ 311 (430)
|++.+....+. ...+.. ....|.+.+.+ +.+++.+..++.+.++.+............ ....|.|+..+|
T Consensus 429 i~l~~~~~~~~-~~~w~~~~~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 429 IRLIDLEDGKL-TQEWKPPAGSIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EEEEESSSTSE-EEEEE-TTS---SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEEECCCCeE-EEEEeCCCCCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 78888776442 333322 33456666654 357777778889999988877664333211 156788888776
No 499
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=79.71 E-value=5.9 Score=20.53 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=20.2
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEE
Q 014154 260 PIKAVAEEPDSFNIYIGNGSGDLASVD 286 (430)
Q Consensus 260 ~i~~~~~sp~~~~l~~~~~d~~i~iwd 286 (430)
.|.+++..+. +++++...+.+|+|.
T Consensus 3 ~i~aia~g~~--~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGDS--WVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccCC--EEEEEeCCCeEEecC
Confidence 5778887654 999999999999983
No 500
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=79.62 E-value=47 Score=29.94 Aligned_cols=65 Identities=18% Similarity=0.241 Sum_probs=35.1
Q ss_pred CCCEEEEEeC-----CCcEEEEECCCCCcceEEEee-c-CCCeEEEEecCCCCEEEEEeCCC----cEEEEEccCCeE
Q 014154 226 DHRKFVAGTN-----DHQVRLYDTSAQRRPVMSFDF-R-ETPIKAVAEEPDSFNIYIGNGSG----DLASVDIRTGKL 292 (430)
Q Consensus 226 ~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~-~-~~~i~~~~~sp~~~~l~~~~~d~----~i~iwd~~~~~~ 292 (430)
++.+.+.|+. ...+..||+.+.+ -..+.. . .......+...++++.+.|+.++ .+.+||+.+.+-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQE--WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCC--eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 5666677664 2358888987643 222221 1 11112222234566777777653 356889887654
Done!